Citrus Sinensis ID: 030700

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170---
Protein Sequence
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Secondary Structure (PSIPRED)
cEEEcccccccccEEEEcccccEEEEccccEEEEEEccccEEEEEEEccccccccEEEccccEEEEEEccccEEEEccccEEEEEEEEcccEEEccccEEEcccccEEEEccccccccccccccccccccccEEEEEEcccccEEEEEcccccccEEEEcccccEEEEEEccc
Secondary Structure Prediction (SSPRO)
cEEEEcccccccccEEEcccccEEEEccccEEEEEcccccEEEEEEEccccccEEEEccccccEEEEEcccccEEEcccccEEEEEccccccEEEccccEEccccEEEEEcccccccHHHHHHHHHccccccEEEEEcccccEEEEEEccccccccEEEcccccEEEEEEccc
Coil and Loop (DISEMBL)
miklgegivnhpedvsvdgngvlytatgdgwikrmhpngtwedwhqvgsqsllgltttkennvIIVCDsqqgllkvsEEGVTVLVSQFngsqlrfandvieasdgslyftvsstkftpaeyyldlvsgephgvllkydpstnqtslvLDGLYFangvalsedERFLVVCESWK
Flexible Loop (DISEMBL)
miklgegivnhpedvsvdgNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Low Complexity Region (SEG)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Disordered region (IsUnstruct)
*************DVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE***
Disordered Region (DISOPRED)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Disordered Region (DISEMBL)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Disordered Region (DISPRO)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	173	2.2.26 [Sep-21-2011]
Q7TP48	376	Adipocyte plasma membrane	yes	no	0.942	0.433	0.326	3e-15
Q9D7N9	415	Adipocyte plasma membrane	yes	no	0.942	0.392	0.315	4e-14
Q3T0E5	412	Adipocyte plasma membrane	yes	no	0.936	0.393	0.322	7e-14
Q9HDC9	416	Adipocyte plasma membrane	yes	no	0.942	0.391	0.315	1e-13
Q5ZIF1	415	Adipocyte plasma membrane	yes	no	0.953	0.397	0.340	2e-12
Q803F5	415	Adipocyte plasma membrane	no	no	0.901	0.375	0.296	1e-09
B5X3B2	416	Adipocyte plasma membrane	N/A	no	0.953	0.396	0.296	2e-09
P94111	335	Strictosidine synthase 1	no	no	0.936	0.483	0.254	4e-09
P68174	342	Strictosidine synthase (F	N/A	no	0.884	0.447	0.266	4e-06
P68175	344	Strictosidine synthase OS	N/A	no	0.884	0.444	0.260	4e-06

>sp|Q7TP48|APMAP_RAT Adipocyte plasma membrane-associated protein OS=Rattus norvegicus GN=Apmap PE=2 SV=2

 Score = 81.3 bits (199), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 62/190 (32%), Positives = 98/190 (51%), Gaps = 27/190 (14%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  +N PE + V+   VL+T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 53  RLFENQLNGPESI-VNIGDVLFTGTADGRVVKLE-NGEIETIARFGS----GPCKTRDDE 106

Query: 61  -------------NNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+  +  V +L+S      G ++ F ND+   
Sbjct: 107 PTCGRPLGIRVGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTIT 166

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 167 RDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSP 226

Query: 162 DERFLVVCES 171
           +E F++V E+
Sbjct: 227 EEDFVLVAET 236

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.
Rattus norvegicus (taxid: 10116)

>sp|Q9D7N9|APMAP_MOUSE Adipocyte plasma membrane-associated protein OS=Mus musculus GN=Apmap PE=1 SV=1

 Score = 77.4 bits (189), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 27/190 (14%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  ++ PE + V+   VL+T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 92  RLFENQLSGPESI-VNIGDVLFTGTADGRVVKLE-NGEIETIARFGS----GPCKTRDDE 145

Query: 61  -------------NNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+  +  V +L+S      G ++ F ND+   
Sbjct: 146 PTCGRPLGIRAGPNGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTVT 205

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L ++     G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 206 RDGRKIYFTDSSSKWQRRDYLLLVMEATDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSP 265

Query: 162 DERFLVVCES 171
           +E F++V E+
Sbjct: 266 EEDFVLVAET 275

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate (By similarity). May play a role in adipocyte differentiation.

Mus musculus (taxid: 10090)

>sp|Q3T0E5|APMAP_BOVIN Adipocyte plasma membrane-associated protein OS=Bos taurus GN=APMAP PE=2 SV=1

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 27/189 (14%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  +  PE ++  G+ V++T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 92  RLFENQLVGPESIANIGD-VMFTGTADGRVVKLE-NGEVETIARFGS----GPCKTRDDE 145

Query: 61  -------------NNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+  +  V +L+S      G ++ F ND+   
Sbjct: 146 PACGRPLGIRAGPNGTLFVVDAYKGLFEVNPWKREVKLLLSSETPIEGRKMSFLNDLTVT 205

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L L+ G   G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 206 RDGRKIYFTDSSSKWQRRDYLLLLMEGTDDGRLLEYDTQTKEVKVLLDHLRFPNGVQLSP 265

Query: 162 DERFLVVCE 170
            E F++V E
Sbjct: 266 AEDFVLVVE 274

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Bos taurus (taxid: 9913)

>sp|Q9HDC9|APMAP_HUMAN Adipocyte plasma membrane-associated protein OS=Homo sapiens GN=APMAP PE=1 SV=2

 Score = 75.5 bits (184), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 27/190 (14%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE-- 60
           +L E  +  PE ++  G+ V++T T DG + ++  NG  E   + GS    G   T++  
Sbjct: 93  RLFENQLVGPESIAHIGD-VMFTGTADGRVVKLE-NGEIETIARFGS----GPCKTRDDE 146

Query: 61  -------------NNVIIVCDSQQGLLKVS--EEGVTVLVSQ---FNGSQLRFANDVIEA 102
                        N  + V D+ +GL +V+  +  V +L+S      G  + F ND+   
Sbjct: 147 PVCGRPLGIRAGPNGTLFVADAYKGLFEVNPWKREVKLLLSSETPIEGKNMSFVNDLTVT 206

Query: 103 SDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE 161
            DG  +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS 
Sbjct: 207 QDGRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTREVKVLLDQLRFPNGVQLSP 266

Query: 162 DERFLVVCES 171
            E F++V E+
Sbjct: 267 AEDFVLVAET 276

Exhibits strong arylesterase activity with beta-naphthyl acetate and phenyl acetate. May play a role in adipocyte differentiation.

Homo sapiens (taxid: 9606)

>sp|Q5ZIF1|APMAP_CHICK Adipocyte plasma membrane-associated protein OS=Gallus gallus GN=APMAP PE=2 SV=1

 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/188 (34%), Positives = 94/188 (50%), Gaps = 23/188 (12%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGS 49
           +L E  +  PE + V+   VL+T T DG I ++              P GT ED    G 
Sbjct: 92  RLWENQLVGPESI-VNIGDVLFTGTADGKILKIEDGEVQTVARIGHGPCGTPEDEPTCGR 150

Query: 50  QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT-VLVSQ---FNGSQLRFANDVIEASD 104
              LG+     NN + V D+  GL +V+   G T +LVS      G +L F ND+    D
Sbjct: 151 P--LGIRVGP-NNTLFVADAYYGLYEVNPGTGETKMLVSTKTLIEGQKLSFLNDLTVTQD 207

Query: 105 G-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
           G  +YFT SS+K+   ++   ++ G   G LL+YD  T +  +++ GL F NGV LS  E
Sbjct: 208 GRKIYFTDSSSKWQRRDFLFLVMEGTDDGRLLEYDTVTKEVKVLMVGLRFPNGVQLSPAE 267

Query: 164 RFLVVCES 171
            F++V E+
Sbjct: 268 DFVLVLET 275

Gallus gallus (taxid: 9031)

>sp|Q803F5|APMAP_DANRE Adipocyte plasma membrane-associated protein OS=Danio rerio GN=apmap PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 23/179 (12%)

Query: 12  PEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGSQSLLGLTTT 58
           PE ++  G+ V YT T DG I ++              P G+ E  H  G    LG+   
Sbjct: 101 PESLANIGD-VFYTGTADGKIVKIEGRNIHVLATIGKPPCGSREHEHTCGRP--LGIRVG 157

Query: 59  KENNVIIVCDSQQGLLKVSEEG--VTVLVS---QFNGSQLRFANDVIEASDGS-LYFTVS 112
             N  + V D+  GL +V+     V  LVS   +  G +L F ND+    DG  +YFT S
Sbjct: 158 P-NGTLFVADAYLGLFEVNPVTGEVKSLVSTEKRIAGRRLGFVNDLDVTQDGKKVYFTDS 216

Query: 113 STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
           S+++   ++   ++     G +L+YD  T + +++++ L F NG+ L  DE  ++V E+
Sbjct: 217 SSRWQRRDFMHLIMEATADGRVLEYDTETKEVNVMMENLRFPNGIQLFPDEESVLVAET 275

Danio rerio (taxid: 7955)

>sp|B5X3B2|APMAP_SALSA Adipocyte plasma membrane-associated protein OS=Salmo salar GN=apmap PE=2 SV=1

 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 24/189 (12%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH--------------PNGTWEDWHQVG 48
           +L E  +  PE ++  G+ ++YT T DG I ++                +G+ E     G
Sbjct: 92  RLFEDQLVGPESIANFGD-LIYTGTADGKIVKIEGKSITVIARLGKPPCDGSREQEPSCG 150

Query: 49  SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS---QFNGSQLRFANDVIEAS 103
               LG+     N  + V D+  GL KV+     VT LVS      G +L F ND+    
Sbjct: 151 RP--LGIRVGP-NGTLFVADAYLGLFKVNPVTGEVTNLVSAGQMVGGRRLSFVNDLDVTQ 207

Query: 104 DG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED 162
           DG  +YFT SS+++   +Y   ++     G +L+YD  T + +++++ L FANG+ L  D
Sbjct: 208 DGRKVYFTDSSSRWQRRDYLHLIMEATADGRVLEYDTETKEVTVLMENLRFANGIQLFPD 267

Query: 163 ERFLVVCES 171
           E  ++V E+
Sbjct: 268 EESVLVAET 276

Salmo salar (taxid: 8030)

>sp|P94111|STS1_ARATH Strictosidine synthase 1 OS=Arabidopsis thaliana GN=SS1 PE=2 SV=2

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 83/185 (44%), Gaps = 23/185 (12%)

Query: 12  PEDVSVDGNGV-LYTATGDGWIKRMHPNGTWEDWHQVGSQS------------------- 51
           PE  + D  G   YT    G I +  P   + D+ Q+   S                   
Sbjct: 39  PEAFAFDSTGKGFYTGVSGGKILKYLPETGYVDFAQITESSNSSWCDGTIGTALAGRCGR 98

Query: 52  LLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLY 108
             G+   ++   + V D+  GL  +S  G   T +    +G   +F + + ++ + G +Y
Sbjct: 99  PAGIAFNEKTGDLYVADAPLGLHVISPAGGLATKITDSVDGKPFKFLDGLDVDPTTGVVY 158

Query: 109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168
           FT  S++F+P +  + L   +  G L KYDPST   +++++GL  + G A+S D  F++V
Sbjct: 159 FTSFSSRFSPIQVLIALGLKDATGKLYKYDPSTKVVTVLMEGLSGSAGCAVSSDGSFVLV 218

Query: 169 CESWK 173
            +  K
Sbjct: 219 SQFTK 223

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68174|STSY_RAUMA Strictosidine synthase (Fragment) OS=Rauvolfia mannii GN=STR1 PE=3 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 44/165 (26%), Positives = 73/165 (44%), Gaps = 12/165 (7%)

Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLGLTT----TKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G T       +NN + + D
Sbjct: 59  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 118

Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 119 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 178

Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E
Sbjct: 179 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 223

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia mannii (taxid: 4062)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P68175|STSY_RAUSE Strictosidine synthase OS=Rauvolfia serpentina GN=STR1 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 12/165 (7%)

Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 61  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 120

Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 121 CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 180

Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E
Sbjct: 181 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 225

Catalyzes the stereospecific condensation of tryptamine with secologanin to form strictosidine, the key intermediate of indole alkaloid biosynthesis.

Rauvolfia serpentina (taxid: 4060)

EC: 4

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
297738547	461	unnamed protein product [Vitis vinifera]	0.982	0.368	0.637	1e-60
225444698	650	PREDICTED: adipocyte plasma membrane-ass	0.982	0.261	0.637	1e-60
225444700	368	PREDICTED: adipocyte plasma membrane-ass	0.982	0.461	0.625	1e-58
225444696	365	PREDICTED: adipocyte plasma membrane-ass	0.971	0.460	0.619	6e-58
297738546	382	unnamed protein product [Vitis vinifera]	0.971	0.439	0.619	6e-58
388499476	372	unknown [Medicago truncatula]	0.994	0.462	0.618	3e-57
357450079	372	Adipocyte plasma membrane-associated pro	0.994	0.462	0.618	3e-57
255550417	356	Adipocyte plasma membrane-associated pro	0.994	0.483	0.601	2e-56
388492006	352	unknown [Medicago truncatula]	0.994	0.488	0.618	3e-56
357450077	352	Adipocyte plasma membrane-associated pro	0.994	0.488	0.612	5e-56

>gi|297738547|emb|CBI27792.3| unnamed protein product [Vitis vinifera]

 Score =  237 bits (605), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 142/171 (83%), Gaps = 1/171 (0%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  +LLG+TTT+   
Sbjct: 158 KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGG 217

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            I+VCD+Q+GLLKV E+GV++L S  NGS++RFA+DVIEASDGSLYF+V+S+KF   ++Y
Sbjct: 218 -IVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWY 276

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WK
Sbjct: 277 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 327

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444698|ref|XP_002277787.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  237 bits (604), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 109/171 (63%), Positives = 142/171 (83%), Gaps = 1/171 (0%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  +LLG+TTT+   
Sbjct: 347 KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGDTLLGVTTTRTGG 406

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            I+VCD+Q+GLLKV E+GV++L S  NGS++RFA+DVIEASDGSLYF+V+S+KF   ++Y
Sbjct: 407 -IVVCDTQKGLLKVGEDGVSLLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHDWY 465

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WK
Sbjct: 466 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 516

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444700|ref|XP_002277807.1| PREDICTED: adipocyte plasma membrane-associated protein [Vitis vinifera] gi|297738548|emb|CBI27793.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/171 (62%), Positives = 135/171 (78%), Gaps = 1/171 (0%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG +N PED+  D  G+LYTAT DGWIKR+H NG+WEDW  +G  +LLG+TT +   
Sbjct: 65  KIGEGFLNKPEDLCFDEEGILYTATRDGWIKRLHRNGSWEDWKLIGGYALLGITTARAGG 124

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            I VCD+Q+GLLKV E+GV+ L S  NGS++RFA+DVIEASDGSLYF+V+S+KF    +Y
Sbjct: 125 -IFVCDAQKGLLKVGEDGVSFLTSHVNGSEIRFADDVIEASDGSLYFSVASSKFGLHHWY 183

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           LDL+  +PHG LLKYDP  N+TS++LD L F NGVALS+DE FLVVCE+WK
Sbjct: 184 LDLLEAKPHGQLLKYDPLLNETSIILDNLAFPNGVALSQDEDFLVVCETWK 234

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444696|ref|XP_002277770.1| PREDICTED: adipocyte plasma membrane-associated protein-like [Vitis vinifera]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 139/171 (81%), Gaps = 3/171 (1%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  SL+G+T T+   
Sbjct: 64  KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGG 123

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            IIVCD ++GLLKV E+GV++L S  NGS+++FANDVIEA+DGS+YF+V+ST+F    +Y
Sbjct: 124 -IIVCDIEKGLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWY 180

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WK
Sbjct: 181 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 231

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738546|emb|CBI27791.3| unnamed protein product [Vitis vinifera]

 Score =  228 bits (581), Expect = 6e-58,   Method: Compositional matrix adjust.
 Identities = 106/171 (61%), Positives = 139/171 (81%), Gaps = 3/171 (1%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
           K+GEG+++ PEDV  DG G+LYTAT DGWIKR+H NG+WEDW  +G  SL+G+T T+   
Sbjct: 81  KIGEGLLDKPEDVCFDGEGILYTATRDGWIKRLHRNGSWEDWRLIGGGSLIGVTPTRTGG 140

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY 122
            IIVCD ++GLLKV E+GV++L S  NGS+++FANDVIEA+DGS+YF+V+ST+F    +Y
Sbjct: 141 -IIVCDIEKGLLKVGEDGVSILTSHVNGSKIKFANDVIEAADGSVYFSVASTEFV--NWY 197

Query: 123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           LD++  +PHG LLKYDP  N+TS++LD L FANGVALS+DE FLVVCE+WK
Sbjct: 198 LDVLEAKPHGQLLKYDPLLNETSILLDNLAFANGVALSQDEDFLVVCETWK 248

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388499476|gb|AFK37804.1| unknown [Medicago truncatula]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 138/173 (79%), Gaps = 1/173 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD NGVLYTAT DGWIKRM  N  WE+W  + S SLLG+TT+K+
Sbjct: 66  VIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKD 125

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+ +GLLKV+E+G +V++SQ NGSQL FA+DVIEASDG++YF+V S KF   +
Sbjct: 126 GG-LIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHD 184

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           +YLDL+   PHG LLKY+P+ N+T +V+D L FANGVALS+DE ++VVCE+WK
Sbjct: 185 WYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWK 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450079|ref|XP_003595316.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484364|gb|AES65567.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  226 bits (575), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 138/173 (79%), Gaps = 1/173 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD NGVLYTAT DGWIKRM  N  WE+W  + S SLLG+TT+K+
Sbjct: 66  VIKLGEGFLKQPEDVCVDKNGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKD 125

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+ +GLLKV+E+G +V++SQ NGSQL FA+DVIEASDG++YF+V S KF   +
Sbjct: 126 GG-LIVCDASEGLLKVTEDGFSVILSQVNGSQLMFADDVIEASDGNIYFSVGSNKFGLHD 184

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           +YLDL+   PHG LLKY+P+ N+T +V+D L FANGVALS+DE ++VVCE+WK
Sbjct: 185 WYLDLLEARPHGQLLKYNPTLNETVIVIDNLTFANGVALSKDEDYVVVCETWK 237

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255550417|ref|XP_002516259.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis] gi|223544745|gb|EEF46261.1| Adipocyte plasma membrane-associated protein, putative [Ricinus communis]

 Score =  223 bits (569), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 137/173 (79%), Gaps = 1/173 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV +D +GVLYTA  D WIKRMH NG+WE+W ++ S +LLG+  +KE
Sbjct: 51  VIKLGEGFIQGPEDVCMDKDGVLYTAVRDKWIKRMHKNGSWENWKRIDSDALLGIAPSKE 110

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+  GLLKV+E+GVTVL S+ NGS+++FA+D IE+SDG++YF+V STKF    
Sbjct: 111 GG-LIVCDADTGLLKVTEDGVTVLASEVNGSKIKFADDAIESSDGNIYFSVPSTKFGLHN 169

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           +YLD++   PHG LLKYDP++NQTS++LDGL F NGVALS +E +LV CESWK
Sbjct: 170 WYLDVLEARPHGQLLKYDPTSNQTSVLLDGLCFPNGVALSWEEDYLVFCESWK 222

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492006|gb|AFK34069.1| unknown [Medicago truncatula]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 107/173 (61%), Positives = 137/173 (79%), Gaps = 1/173 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD +GVLYTAT DGWIKRM  N  WE+W  V S SLLG+TT+K+
Sbjct: 47  VIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNENWENWKHVDSSSLLGITTSKD 106

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+  GLLKV+E+G +V++SQ NGSQL FA+D+IEASDG++YF+V STKF    
Sbjct: 107 GG-LIVCDTTLGLLKVTEDGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHN 165

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           +YLD++   PHG LL+Y+P +N+T +VLD L FANGVALS+DE +LVVCE+WK
Sbjct: 166 WYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFANGVALSKDEDYLVVCETWK 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357450077|ref|XP_003595315.1| Adipocyte plasma membrane-associated protein [Medicago truncatula] gi|355484363|gb|AES65566.1| Adipocyte plasma membrane-associated protein [Medicago truncatula]

 Score =  222 bits (565), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/173 (61%), Positives = 137/173 (79%), Gaps = 1/173 (0%)

Query: 1   MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE 60
           +IKLGEG +  PEDV VD +GVLYTAT DGWIKRM  N  WE+W  + S SLLG+TT+K+
Sbjct: 47  VIKLGEGFLKQPEDVCVDKDGVLYTATRDGWIKRMVRNENWENWKHIDSSSLLGITTSKD 106

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
              +IVCD+  GLLKV+E+G +V++SQ NGSQL FA+D+IEASDG++YF+V STKF    
Sbjct: 107 GG-LIVCDTTLGLLKVTEDGFSVILSQVNGSQLIFADDIIEASDGNIYFSVPSTKFGLHN 165

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK 173
           +YLD++   PHG LL+Y+P +N+T +VLD L FANGVALS+DE +LVVCE+WK
Sbjct: 166 WYLDVLEARPHGQLLRYNPLSNETVIVLDHLAFANGVALSKDEDYLVVCETWK 218

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	173
TAIR|locus:2081830	370	SSL4 "strictosidine synthase-l	0.953	0.445	0.355	5.2e-26
TAIR|locus:2081845	371	YLS2 "YELLOW-LEAF-SPECIFIC GEN	0.953	0.444	0.372	6.6e-26
TAIR|locus:2081860	371	AT3G51440 [Arabidopsis thalian	0.959	0.447	0.369	5.9e-25
TAIR|locus:2081875	371	AT3G51450 [Arabidopsis thalian	0.959	0.447	0.357	7.6e-25
TAIR|locus:2097488	403	LAP3 "LESS ADHERENT POLLEN 3"	0.763	0.327	0.385	2.4e-18
TAIR|locus:2201841	390	SSL3 "strictosidine synthase-l	0.682	0.302	0.383	7.6e-18
TAIR|locus:2080565	370	AT3G57020 [Arabidopsis thalian	0.936	0.437	0.331	1e-16
TAIR|locus:504956439	395	AT5G22020 [Arabidopsis thalian	0.676	0.296	0.413	2.3e-16
RGD|1308874	376	Apmap "adipocyte plasma membra	0.953	0.438	0.324	3.2e-15
UNIPROTKB|F1LLW3	386	RGD1308874 "Protein RGD1308874	0.953	0.427	0.324	3.5e-15

TAIR|locus:2081830 SSL4 "strictosidine synthase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 63/177 (35%), Positives = 105/177 (59%)

Query:     4 LGEGIVNHPEDVSV--DGNGVLYTATGDGWIKRM--HPNGT---WEDWHQVGSQSLLGLT 56
             +G G++N+PED++   D N ++YT   DGW+KR+  H +      EDW   G + L G+ 
Sbjct:    62 IGVGLLNNPEDIAYHKDSN-LIYTGCVDGWVKRVSVHDSANDSIVEDWVNTGGRPL-GIA 119

Query:    57 TTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST 114
                   VI V D+ +GLL +S+ G    +L  + +G + +  + V  A +G LYFT +S+
Sbjct:   120 FGLHGEVI-VADANKGLLSISDGGKKTELLTDEADGVRFKLTDAVTVADNGVLYFTDASS 178

Query:   115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
             K+   ++  D + G+PHG ++ +DP+T  T ++L  LYFANG+++S D+   V CE+
Sbjct:   179 KYDFYQFIFDFLEGKPHGRVMSFDPTTRATRVLLKDLYFANGISMSPDQTHFVFCET 235

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2081845 YLS2 "YELLOW-LEAF-SPECIFIC GENE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 66/177 (37%), Positives = 104/177 (58%)

Query:     4 LGEGIVNHPEDVSV--DGNGVLYTATGDGWIKRM--HPNGT---WEDWHQVGSQSLLGLT 56
             +G G+++ PED++   D N ++YT   DGW+KR+  H +      EDW   G + L G+ 
Sbjct:    62 IGVGLLDKPEDIAYHQDSN-LIYTGCIDGWVKRVSVHDSANDSVVEDWVNTGGRPL-GIA 119

Query:    57 TTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST 114
                   VI V D+ +GLL +S +G    +L  Q  G + +  + V  A +G LYFT +S 
Sbjct:   120 FGVHGEVI-VADAYKGLLNISGDGKKTELLTDQAEGVKFKLTDVVAVADNGVLYFTDASY 178

Query:   115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
             K+T  +   D++ G+PHG L+ +DP+T  T ++L  LYFANGV++S D+  L+ CE+
Sbjct:   179 KYTLHQVKFDILEGKPHGRLMSFDPTTRVTRVLLKDLYFANGVSMSPDQTHLIFCET 235

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081860 AT3G51440 [Arabidopsis thaliana (taxid:3702)]

 Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 65/176 (36%), Positives = 103/176 (58%)

Query:     4 LGEGIVNHPEDVSV-DGNGVLYTATGDGWIKRMHP----NGTW-EDWHQVGSQSLLGLTT 57
             +G G++N PED++  + +G +YT   DGW+KR+      N +  ED    G + L G+  
Sbjct:    62 IGVGLLNSPEDIAYHEDSGFIYTGCVDGWVKRVKVAESVNDSLVEDLVNTGGRPL-GIAF 120

Query:    58 TKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTK 115
                  VI V D+ +GLL +S +G    +L  + +G + +  + V  A +G LYFT  S K
Sbjct:   121 GIHGEVI-VADAYKGLLNISGDGKKTELLTEEADGVRFKLPDAVTVADNGVLYFTDGSYK 179

Query:   116 FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
             +   ++  D++ G+PHG L+ +DP+T  T ++L  LYFANGV+LS D+  LV CE+
Sbjct:   180 YNLHQFSFDILEGKPHGRLMSFDPTTKVTRVLLRDLYFANGVSLSPDQTHLVFCET 235

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

TAIR|locus:2081875 AT3G51450 [Arabidopsis thaliana (taxid:3702)]

 Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
 Identities = 63/176 (35%), Positives = 101/176 (57%)

Query:     4 LGEGIVNHPEDVSVDG-NGVLYTATGDGWIKRMHP-----NGTWEDWHQVGSQSLLGLTT 57
             +G G++N PED++    + ++YT   DGW+KR+       +   EDW   G + L G+  
Sbjct:    62 IGVGLLNIPEDIAYHKESNLIYTGCVDGWVKRVKVADSVNDSVVEDWVNTGGRPL-GIAF 120

Query:    58 TKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTK 115
                  VI V D  +GLL +S +G    +L  + +G + +  + V  A +G LYFT +S K
Sbjct:   121 GIHGEVI-VADVHKGLLNISGDGKKTELLTDEADGVKFKLTDAVTVADNGVLYFTDASYK 179

Query:   116 FTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
             +T  +  LD++ G+P G LL +DP+T  T ++L  LYFANG+ +S D+  L+ CE+
Sbjct:   180 YTLNQLSLDMLEGKPFGRLLSFDPTTRVTKVLLKDLYFANGITISPDQTHLIFCET 235

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

TAIR|locus:2097488 LAP3 "LESS ADHERENT POLLEN 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 226 (84.6 bits), Expect = 2.4e-18, P = 2.4e-18
 Identities = 52/135 (38%), Positives = 77/135 (57%)

Query:    40 TWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFA 96
             T + W H+      LGL   KE   + + D+  GLL V  EG   T L +   G  + FA
Sbjct:   139 TNKQWKHEKLCGRPLGLRFHKETGNLYIADAYYGLLVVGPEGGIATPLATHVEGKPILFA 198

Query:    97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG 156
             ND+    +GS++FT +S ++  A ++  L+ GE  G LL+YDP T  T +VL+GL F NG
Sbjct:   199 NDLDIHRNGSIFFTDTSKRYDRANHFFILLEGESTGRLLRYDPPTKTTHIVLEGLAFPNG 258

Query:   157 VALSEDERFLVVCES 171
             + LS+D+ FL+  E+
Sbjct:   259 IQLSKDQSFLLFTET 273

GO:0005739 "mitochondrion" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2201841 SSL3 "strictosidine synthase-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 7.6e-18, P = 7.6e-18
 Identities = 46/120 (38%), Positives = 74/120 (61%)

Query:    53 LGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFT 110
             LGL   K+N  + + D+  G++KV  EG   T + ++ +G  LRF ND+    +G++YFT
Sbjct:   133 LGLRFDKKNGDLYIADAYLGIMKVGPEGGLATSVTNEADGVPLRFTNDLDIDDEGNVYFT 192

Query:   111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
              SS+ F   ++ L +VSGE  G +LKY+P T +T+ ++  L F NG++L +D  F + CE
Sbjct:   193 DSSSFFQRRKFMLLIVSGEDSGRVLKYNPKTKETTTLVRNLQFPNGLSLGKDGSFFIFCE 252

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2080565 AT3G57020 [Arabidopsis thaliana (taxid:3702)]

 Score = 210 (79.0 bits), Expect = 1.0e-16, P = 1.0e-16
 Identities = 58/175 (33%), Positives = 88/175 (50%)

Query:     5 GEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH--PN-GTWEDWHQVGSQSL-LGLTTTKE 60
             GEG    P    VDG  + +     GW+   +  P+ G       V +    LGLT  K+
Sbjct:    63 GEG----PYAAVVDGRILKWRGDDLGWVDFAYTSPHRGNCSKTEVVPTCGRPLGLTFEKK 118

Query:    61 NNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFAN--DVIEASDGSLYFTVSSTKF 116
                + +CD   GL+KV  EG    ++V +  G ++ FAN  D+ E  D   YF  SS K+
Sbjct:   119 TGDLYICDGYLGLMKVGPEGGLAELIVDEAEGRKVMFANQGDIDEEED-VFYFNDSSDKY 177

Query:   117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
                + +   VSGE  G +++YD  T +  +++D L   NG+AL++D  FL+ CES
Sbjct:   178 HFRDVFFVAVSGERSGRVIRYDKKTKEAKVIMDNLVCNNGLALNKDRSFLITCES 232

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS;TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009813 "flavonoid biosynthetic process" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

TAIR|locus:504956439 AT5G22020 [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 50/121 (41%), Positives = 68/121 (56%)

Query:    53 LGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFT 110
             LGL   K    + + D+  GLLKV  EG   T LV++  G  L F ND+  A DG++YFT
Sbjct:   139 LGLRFDKRTGDLYIADAYMGLLKVGPEGGLATPLVTEAEGVPLGFTNDLDIADDGTVYFT 198

Query:   111 VSSTKFTPAEYYLDLV-SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC 169
              SS  +    + L LV SG+  G +LKYDP   +  +++  L F NGV++S D  F V C
Sbjct:   199 DSSISYQRRNF-LQLVFSGDNTGRVLKYDPVAKKAVVLVSNLQFPNGVSISRDGSFFVFC 257

Query:   170 E 170
             E
Sbjct:   258 E 258

GO:0005576 "extracellular region" evidence=ISM

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009821 "alkaloid biosynthetic process" evidence=ISS

GO:0016844 "strictosidine synthase activity" evidence=IEA;ISS

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1308874 Apmap "adipocyte plasma membrane associated protein" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 3.2e-15, P = 3.2e-15
 Identities = 61/188 (32%), Positives = 96/188 (51%)

Query:     3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGS 49
             +L E  +N PE + V+   VL+T T DG + ++              P  T +D    G 
Sbjct:    53 RLFENQLNGPESI-VNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGR 111

Query:    50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEE--GVTVLVSQ---FNGSQLRFANDVIEASD 104
                LG+     N  + V D+ +GL +V+ +   V +L+S      G ++ F ND+    D
Sbjct:   112 P--LGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRD 168

Query:   105 G-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
             G  +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS +E
Sbjct:   169 GRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEE 228

Query:   164 RFLVVCES 171
              F++V E+
Sbjct:   229 DFVLVAET 236

GO:0004064 "arylesterase activity" evidence=ISO

GO:0009058 "biosynthetic process" evidence=IEA

GO:0009986 "cell surface" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

UNIPROTKB|F1LLW3 RGD1308874 "Protein RGD1308874" [Rattus norvegicus (taxid:10116)]

 Score = 197 (74.4 bits), Expect = 3.5e-15, P = 3.5e-15
 Identities = 61/188 (32%), Positives = 96/188 (51%)

Query:     3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-------------PNGTWEDWHQVGS 49
             +L E  +N PE + V+   VL+T T DG + ++              P  T +D    G 
Sbjct:    63 RLFENQLNGPESI-VNIGDVLFTGTADGRVVKLENGEIETIARFGSGPCKTRDDEPTCGR 121

Query:    50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEE--GVTVLVSQ---FNGSQLRFANDVIEASD 104
                LG+     N  + V D+ +GL +V+ +   V +L+S      G ++ F ND+    D
Sbjct:   122 P--LGIRVGP-NGTLFVVDAYKGLFEVNPQKRSVKLLLSSETPIEGKKMSFVNDLTITRD 178

Query:   105 G-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE 163
             G  +YFT SS+K+   +Y L ++ G   G LL+YD  T +  ++LD L F NGV LS +E
Sbjct:   179 GRKIYFTDSSSKWQRRDYLLLVMEGTDDGRLLEYDTVTKEVKVLLDQLQFPNGVQLSPEE 238

Query:   164 RFLVVCES 171
              F++V E+
Sbjct:   239 DFVLVAET 246

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016844 "strictosidine synthase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00016421001 SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (368 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	173
pfam03088	89	pfam03088, Str_synth, Strictosidine synthase	1e-22
COG3386	307	COG3386, COG3386, Gluconolactonase [Carbohydrate t	8e-19
pfam08450	245	pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like re	2e-09

>gnl|CDD|111929 pfam03088, Str_synth, Strictosidine synthase

 Score = 85.9 bits (213), Expect = 1e-22
 Identities = 32/73 (43%), Positives = 45/73 (61%), Gaps = 1/73 (1%)

Query: 98  DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV 157
           DV     G LYFT SS+++   +    ++ G+  G L+KYDPST  T ++L  LYF NG+
Sbjct: 4   DVDP-ETGVLYFTDSSSRYDRRQVIFAMLEGDKTGRLMKYDPSTKVTKVLLKDLYFPNGI 62

Query: 158 ALSEDERFLVVCE 170
           ALS D  F++ CE
Sbjct: 63  ALSPDGSFVLFCE 75

Strictosidine synthase (E.C. 4.3.3.2) is a key enzyme in alkaloid biosynthesis. It catalyzes the condensation of tryptamine with secologanin to form strictosidine. Length = 89

>gnl|CDD|225921 COG3386, COG3386, Gluconolactonase [Carbohydrate transport and metabolism]

 Score = 80.9 bits (200), Expect = 8e-19
 Identities = 46/171 (26%), Positives = 65/171 (38%), Gaps = 15/171 (8%)

Query: 4   LGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENN 62
           LGEG V  P     D   +L+     G I R+ P  G    +   G  S   L       
Sbjct: 26  LGEGPVWDP-----DRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSSGALIDAGGR- 79

Query: 63  VIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY 121
            +I C+    LL     G +T+L    +G  L   ND +   DG ++F           +
Sbjct: 80  -LIACEHGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFG------DMGYF 132

Query: 122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW 172
            L      P G L + DP      L+ D L   NG+A S D + L V ++ 
Sbjct: 133 DLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183

Length = 307

>gnl|CDD|219847 pfam08450, SGL, SMP-30/Gluconolaconase/LRE-like region

 Score = 54.6 bits (132), Expect = 2e-09
 Identities = 47/172 (27%), Positives = 64/172 (37%), Gaps = 22/172 (12%)

Query: 4   LGEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKEN 61
           LGEG V   E+      G LY      G I R+ P  G    W   G    + L    + 
Sbjct: 1   LGEGPVWDEEE------GALYWVDILGGRIHRLDPATGKETVWDLPGPVGAIALR--DDG 52

Query: 62  NVIIVCDSQQGLLKVSEEGVTVLVSQFNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
            +I+       LL +    +T L          RF ND     DG  +F       T   
Sbjct: 53  RLIVALKRGLALLDLDTGELTTLADLEPDEPLNRF-NDGKVDPDGRFWFG------TMGF 105

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW 172
              D+  G   G L + DP   +   VLDG+  +NG+A S D + L   +S 
Sbjct: 106 ---DIAPGGEPGALYRLDPDG-KVERVLDGITISNGLAWSPDGKTLYFADSP 153

This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30), gluconolactonase and luciferin-regenerating enzyme (LRE). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 and LRE. Length = 245

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	173
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.9
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	99.89
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.89
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	99.81
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	99.77
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	99.74
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	99.71
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.69
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.6
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.56
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	99.51
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	99.46
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.38
PRK11028	330	6-phosphogluconolactonase; Provisional	99.31
PRK11028	330	6-phosphogluconolactonase; Provisional	99.3
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	99.24
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.21
COG3391	381	Uncharacterized conserved protein [Function unknow	99.2
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	99.19
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.16
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	99.11
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.09
COG3391	381	Uncharacterized conserved protein [Function unknow	99.08
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	98.99
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.97
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	98.95
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	98.92
KOG1520	376	consensus Predicted alkaloid synthase/Surface muci	98.89
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.86
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	98.86
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.85
KOG1214	1289	consensus Nidogen and related basement membrane pr	98.84
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	98.83
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	98.79
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.77
COG3211	616	PhoX Predicted phosphatase [General function predi	98.76
PRK05137	435	tolB translocation protein TolB; Provisional	98.73
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	98.73
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.72
PRK04792	448	tolB translocation protein TolB; Provisional	98.7
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	98.69
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	98.68
PRK03629	429	tolB translocation protein TolB; Provisional	98.62
KOG0266	456	consensus WD40 repeat-containing protein [General	98.61
PRK02889	427	tolB translocation protein TolB; Provisional	98.61
PRK04922	433	tolB translocation protein TolB; Provisional	98.58
PRK00178	430	tolB translocation protein TolB; Provisional	98.57
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	98.54
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.54
PRK03629	429	tolB translocation protein TolB; Provisional	98.52
PRK05137	435	tolB translocation protein TolB; Provisional	98.49
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.47
PRK04922	433	tolB translocation protein TolB; Provisional	98.47
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	98.44
PRK04792	448	tolB translocation protein TolB; Provisional	98.41
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.41
PRK04043	419	tolB translocation protein TolB; Provisional	98.41
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	98.4
PRK01742	429	tolB translocation protein TolB; Provisional	98.34
KOG0315	311	consensus G-protein beta subunit-like protein (con	98.33
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	98.33
PRK00178	430	tolB translocation protein TolB; Provisional	98.32
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.31
PRK02889	427	tolB translocation protein TolB; Provisional	98.29
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.29
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	98.27
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	98.26
PRK02888	635	nitrous-oxide reductase; Validated	98.24
PRK01742	429	tolB translocation protein TolB; Provisional	98.23
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	98.22
KOG0318	603	consensus WD40 repeat stress protein/actin interac	98.21
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	98.18
COG4946	668	Uncharacterized protein related to the periplasmic	98.15
KOG0286	343	consensus G-protein beta subunit [General function	98.15
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	98.14
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	98.13
PRK02888	635	nitrous-oxide reductase; Validated	98.12
PRK01029	428	tolB translocation protein TolB; Provisional	98.1
KOG0279	315	consensus G protein beta subunit-like protein [Sig	98.09
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.05
PRK04043	419	tolB translocation protein TolB; Provisional	98.04
KOG1273	405	consensus WD40 repeat protein [General function pr	98.03
KOG0266	456	consensus WD40 repeat-containing protein [General	98.02
KOG0973	942	consensus Histone transcription regulator HIRA, WD	98.01
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.98
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.98
PRK01029	428	tolB translocation protein TolB; Provisional	97.97
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	97.94
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	97.94
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.93
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.93
PTZ00421	493	coronin; Provisional	97.92
KOG0283	712	consensus WD40 repeat-containing protein [Function	97.89
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.87
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.86
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.84
TIGR03032	335	conserved hypothetical protein TIGR03032. This pro	97.82
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.82
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	97.79
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.76
KOG1539	910	consensus WD repeat protein [General function pred	97.76
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	97.75
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.68
KOG0973	942	consensus Histone transcription regulator HIRA, WD	97.68
KOG0286	343	consensus G-protein beta subunit [General function	97.66
PTZ00420	568	coronin; Provisional	97.65
KOG0279	315	consensus G protein beta subunit-like protein [Sig	97.6
KOG0288	459	consensus WD40 repeat protein TipD [General functi	97.59
KOG2096	420	consensus WD40 repeat protein [General function pr	97.59
KOG0263	707	consensus Transcription initiation factor TFIID, s	97.59
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.57
KOG0315	311	consensus G-protein beta subunit-like protein (con	97.55
KOG0303	472	consensus Actin-binding protein Coronin, contains	97.55
PTZ00421	493	coronin; Provisional	97.55
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	97.54
COG2133	399	Glucose/sorbosone dehydrogenases [Carbohydrate tra	97.54
KOG0289	506	consensus mRNA splicing factor [General function p	97.53
KOG0293	519	consensus WD40 repeat-containing protein [Function	97.52
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	97.5
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.49
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.49
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.49
PF13449	326	Phytase-like: Esterase-like activity of phytase	97.47
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	97.47
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.46
KOG0772	641	consensus Uncharacterized conserved protein, conta	97.45
KOG2055	514	consensus WD40 repeat protein [General function pr	97.43
KOG0289	506	consensus mRNA splicing factor [General function p	97.41
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.4
KOG1274	933	consensus WD40 repeat protein [General function pr	97.39
KOG0282	503	consensus mRNA splicing factor [Function unknown]	97.37
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	97.34
KOG1274	933	consensus WD40 repeat protein [General function pr	97.33
COG3292	671	Predicted periplasmic ligand-binding sensor domain	97.32
PF05787	524	DUF839: Bacterial protein of unknown function (DUF	97.28
KOG0640	430	consensus mRNA cleavage stimulating factor complex	97.26
COG4946	668	Uncharacterized protein related to the periplasmic	97.25
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.22
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.21
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	97.21
KOG2055	514	consensus WD40 repeat protein [General function pr	97.21
KOG1407	313	consensus WD40 repeat protein [Function unknown]	97.19
KOG2106	626	consensus Uncharacterized conserved protein, conta	97.18
PTZ00420	568	coronin; Provisional	97.15
KOG0296	399	consensus Angio-associated migratory cell protein	97.15
KOG0646	476	consensus WD40 repeat protein [General function pr	97.13
PLN00181	793	protein SPA1-RELATED; Provisional	97.13
KOG0294	362	consensus WD40 repeat-containing protein [Function	97.12
smart00135	43	LY Low-density lipoprotein-receptor YWTD domain. T	97.12
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	97.1
KOG0643	327	consensus Translation initiation factor 3, subunit	97.08
KOG1539	910	consensus WD repeat protein [General function pred	97.08
KOG0278	334	consensus Serine/threonine kinase receptor-associa	97.05
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	97.01
KOG2139	445	consensus WD40 repeat protein [General function pr	96.93
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	96.91
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.91
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.91
KOG2048	691	consensus WD40 repeat protein [General function pr	96.9
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.88
KOG0645	312	consensus WD40 repeat protein [General function pr	96.83
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.83
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	96.82
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	96.8
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	96.8
KOG0771	398	consensus Prolactin regulatory element-binding pro	96.76
KOG2048	691	consensus WD40 repeat protein [General function pr	96.75
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	96.75
PF14517	229	Tachylectin: Tachylectin; PDB: 1TL2_A.	96.69
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	96.66
PLN00181	793	protein SPA1-RELATED; Provisional	96.61
KOG0310	487	consensus Conserved WD40 repeat-containing protein	96.6
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.59
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.58
PRK13616	591	lipoprotein LpqB; Provisional	96.58
KOG0296	399	consensus Angio-associated migratory cell protein	96.57
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	96.54
KOG2139	445	consensus WD40 repeat protein [General function pr	96.51
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.46
KOG1215	877	consensus Low-density lipoprotein receptors contai	96.43
KOG2096	420	consensus WD40 repeat protein [General function pr	96.43
KOG0301	745	consensus Phospholipase A2-activating protein (con	96.42
KOG0275	508	consensus Conserved WD40 repeat-containing protein	96.42
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	96.36
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.31
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	96.3
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	96.27
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.24
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	96.24
KOG0295	406	consensus WD40 repeat-containing protein [Function	96.23
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.14
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	96.12
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	96.07
COG1520	370	FOG: WD40-like repeat [Function unknown]	96.03
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	96.0
KOG3881	412	consensus Uncharacterized conserved protein [Funct	95.93
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.88
PF00058	42	Ldl_recept_b: Low-density lipoprotein receptor rep	95.83
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	95.79
KOG0639	705	consensus Transducin-like enhancer of split protei	95.78
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	95.74
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	95.7
KOG2110	391	consensus Uncharacterized conserved protein, conta	95.65
KOG1963	792	consensus WD40 repeat protein [General function pr	95.55
KOG1273	405	consensus WD40 repeat protein [General function pr	95.53
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	95.53
KOG0284	464	consensus Polyadenylation factor I complex, subuni	95.49
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	95.49
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	95.47
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	95.46
KOG0283	712	consensus WD40 repeat-containing protein [Function	95.42
KOG0316	307	consensus Conserved WD40 repeat-containing protein	95.42
PLN00033	398	photosystem II stability/assembly factor; Provisio	95.4
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	95.38
PRK13616	591	lipoprotein LpqB; Provisional	95.3
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	95.28
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	95.28
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	95.18
KOG2315	566	consensus Predicted translation initiation factor	95.13
KOG0643	327	consensus Translation initiation factor 3, subunit	95.09
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	95.07
COG3292	671	Predicted periplasmic ligand-binding sensor domain	95.06
KOG0639	705	consensus Transducin-like enhancer of split protei	95.01
KOG1215	877	consensus Low-density lipoprotein receptors contai	94.95
COG1520	370	FOG: WD40-like repeat [Function unknown]	94.93
KOG0310	487	consensus Conserved WD40 repeat-containing protein	94.9
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	94.81
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.8
KOG0646	476	consensus WD40 repeat protein [General function pr	94.77
KOG0316	307	consensus Conserved WD40 repeat-containing protein	94.72
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	94.7
PRK13684	334	Ycf48-like protein; Provisional	94.64
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	94.52
COG3211	616	PhoX Predicted phosphatase [General function predi	94.39
KOG0645	312	consensus WD40 repeat protein [General function pr	94.23
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	94.23
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	94.19
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	94.05
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	94.0
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	93.99
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	93.91
KOG0640	430	consensus mRNA cleavage stimulating factor complex	93.87
KOG0284	464	consensus Polyadenylation factor I complex, subuni	93.74
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	93.69
PRK13684	334	Ycf48-like protein; Provisional	93.69
KOG0641	350	consensus WD40 repeat protein [General function pr	93.51
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	93.47
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	93.39
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	93.31
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	93.23
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	93.16
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	93.06
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.99
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	92.94
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	92.91
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	92.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	92.84
KOG3881	412	consensus Uncharacterized conserved protein [Funct	92.33
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.26
PF06739	38	SBBP: Beta-propeller repeat; InterPro: IPR010620 T	92.2
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	92.16
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	91.99
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	91.99
KOG2321	703	consensus WD40 repeat protein [General function pr	91.97
KOG2321	703	consensus WD40 repeat protein [General function pr	91.9
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	91.82
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	91.72
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	91.61
KOG4328	498	consensus WD40 protein [Function unknown]	91.53
PF07494	24	Reg_prop: Two component regulator propeller; Inter	91.52
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	91.36
KOG0267	825	consensus Microtubule severing protein katanin p80	91.13
KOG0302	440	consensus Ribosome Assembly protein [General funct	90.93
KOG2395	644	consensus Protein involved in vacuole import and d	90.85
KOG0294	362	consensus WD40 repeat-containing protein [Function	90.54
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	90.5
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	90.47
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	90.44
KOG1963	792	consensus WD40 repeat protein [General function pr	90.38
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.25
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	89.94
KOG0649	325	consensus WD40 repeat protein [General function pr	89.55
KOG2315	566	consensus Predicted translation initiation factor	89.48
KOG0308	735	consensus Conserved WD40 repeat-containing protein	89.34
KOG0771	398	consensus Prolactin regulatory element-binding pro	89.23
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	89.23
PRK13614	573	lipoprotein LpqB; Provisional	89.12
KOG2314	698	consensus Translation initiation factor 3, subunit	88.88
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	88.39
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	88.09
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	87.9
KOG4283	397	consensus Transcription-coupled repair protein CSA	87.84
KOG0649	325	consensus WD40 repeat protein [General function pr	87.44
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	87.31
KOG0641	350	consensus WD40 repeat protein [General function pr	87.27
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	87.14
KOG0918	476	consensus Selenium-binding protein [Inorganic ion	86.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.89
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	86.81
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	86.5
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	86.48
KOG0295	406	consensus WD40 repeat-containing protein [Function	86.38
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	85.95
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	85.9
KOG1063	764	consensus RNA polymerase II elongator complex, sub	85.87
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	85.47
KOG2111	346	consensus Uncharacterized conserved protein, conta	84.78
PF13570	40	PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.	84.74
KOG2111	346	consensus Uncharacterized conserved protein, conta	84.59
KOG0288	459	consensus WD40 repeat protein TipD [General functi	84.53
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	83.54
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	83.29
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	82.93
KOG0269	839	consensus WD40 repeat-containing protein [Function	82.9
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	82.85
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	82.47
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	82.44
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	81.86
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	81.07
PF14269	299	Arylsulfotran_2: Arylsulfotransferase (ASST)	80.98
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	80.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	80.57
COG5167	776	VID27 Protein involved in vacuole import and degra	80.43
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	80.38

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.90  E-value=2.9e-22  Score=147.57  Aligned_cols=148  Identities=32%  Similarity=0.451  Sum_probs=115.4

Q ss_pred             cceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEc-cCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030700           12 PEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVSE-EG-VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~-~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~   86 (173)
                      |||++|++ +|.||++| .+++|+++++++.......... |. |++++ +++++ |+|+.. ++..++. ++ .+.+..
T Consensus         2 ~Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~~~~~~-~~-G~~~~~~~g~l-~v~~~~-~~~~~d~~~g~~~~~~~   77 (246)
T PF08450_consen    2 GEGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEVIDLPG-PN-GMAFDRPDGRL-YVADSG-GIAVVDPDTGKVTVLAD   77 (246)
T ss_dssp             EEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEESSS-EE-EEEEECTTSEE-EEEETT-CEEEEETTTTEEEEEEE
T ss_pred             CcceEEECCCCEEEEEEcCCCEEEEEECCCCeEEEEecCC-Cc-eEEEEccCCEE-EEEEcC-ceEEEecCCCcEEEEee
Confidence            79999998 89999999 7889999998776655434343 88 99999 78777 999866 4555574 66 777776


Q ss_pred             ccCCc-cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030700           87 QFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (173)
Q Consensus        87 ~~~~~-~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~  165 (173)
                      ...+. ++..||+++++++|++|+++.......         ....++|++++++ +++..+..++..||||+|+||++.
T Consensus        78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~---------~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~  147 (246)
T PF08450_consen   78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGAS---------GIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKT  147 (246)
T ss_dssp             EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTT---------CGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSE
T ss_pred             ccCCCcccCCCceEEEcCCCCEEEEecCCCccc---------cccccceEEECCC-CeEEEEecCcccccceEECCcchh
Confidence            65444 778999999999999999985421100         0111799999998 888899999999999999999999


Q ss_pred             EEEEecCC
Q 030700          166 LVVCESWK  173 (173)
Q Consensus       166 lyv~~~~~  173 (173)
                      |||+++.+
T Consensus       148 lyv~ds~~  155 (246)
T PF08450_consen  148 LYVADSFN  155 (246)
T ss_dssp             EEEEETTT
T ss_pred             eeeccccc
Confidence            99999863

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=99.89  E-value=4.2e-22  Score=149.98  Aligned_cols=125  Identities=39%  Similarity=0.713  Sum_probs=115.7

Q ss_pred             cccCccccceEEccCC-cEEEEEeCCCeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccce
Q 030700           46 QVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY  122 (173)
Q Consensus        46 ~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~  122 (173)
                      +.+++|. ||+|+..| ++ ||||.+.|++.+++.|  .+.+.+..+|+++...|++.++++|.+||||.+..++.+++.
T Consensus       112 ~~CGRPL-Gl~f~~~ggdL-~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N~ldI~~~g~vyFTDSSsk~~~rd~~  189 (376)
T KOG1520|consen  112 PLCGRPL-GIRFDKKGGDL-YVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLNDLDIDPEGVVYFTDSSSKYDRRDFV  189 (376)
T ss_pred             cccCCcc-eEEeccCCCeE-EEEecceeeEEECCCCCcceeccccccCeeeeecCceeEcCCCeEEEeccccccchhheE
Confidence            3468999 99999887 77 9999999999999866  677788889999999999999999999999999999998888


Q ss_pred             eeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       123 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ..++++.++|++++||+.+..++++.+++.+|||+++|||+.++.++|+.
T Consensus       190 ~a~l~g~~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~  239 (376)
T KOG1520|consen  190 FAALEGDPTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETT  239 (376)
T ss_pred             EeeecCCCccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeec
Confidence            89999999999999999999999999999999999999999999999975

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.89  E-value=2.1e-21  Score=146.11  Aligned_cols=156  Identities=27%  Similarity=0.366  Sum_probs=122.3

Q ss_pred             cCCcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCc-EEE
Q 030700            9 VNHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGV-TVL   84 (173)
Q Consensus         9 ~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~-~~~   84 (173)
                      ..-.||..|++++ .||++| .+++|+++++ +|+...+..+...+. ++.++.+|++ ++|..+-.++..+..+. +.+
T Consensus        24 ~~~gEgP~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~~~~p~~~~~-~~~~d~~g~L-v~~~~g~~~~~~~~~~~~t~~  101 (307)
T COG3386          24 ATLGEGPVWDPDRGALLWVDILGGRIHRLDPETGKKRVFPSPGGFSS-GALIDAGGRL-IACEHGVRLLDPDTGGKITLL  101 (307)
T ss_pred             cccccCccCcCCCCEEEEEeCCCCeEEEecCCcCceEEEECCCCccc-ceeecCCCeE-EEEccccEEEeccCCceeEEe
Confidence            5678999999965 688888 7889999997 477777777777788 9999999888 88866544444423344 788


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER  164 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~  164 (173)
                      ....++.+.++||++.++|+|++||++... ..     ....+..+.|+|||+||.++..+++...+..|||||||||++
T Consensus       102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~-~~-----~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~  175 (307)
T COG3386         102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGY-FD-----LGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGK  175 (307)
T ss_pred             ccccCCCCcCCCCceeEcCCCCEEEeCCCc-cc-----cCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCC
Confidence            888888899999999999999999998762 10     112233456799999997555555555699999999999999


Q ss_pred             EEEEEecC
Q 030700          165 FLVVCESW  172 (173)
Q Consensus       165 ~lyv~~~~  172 (173)
                      +||++||.
T Consensus       176 tly~aDT~  183 (307)
T COG3386         176 TLYVADTP  183 (307)
T ss_pred             EEEEEeCC
Confidence            99999985

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=99.81  E-value=4.3e-18  Score=125.38  Aligned_cols=144  Identities=22%  Similarity=0.332  Sum_probs=107.8

Q ss_pred             ccCCcceEEEcCCCCEEEEcC-C--------CeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEc
Q 030700            8 IVNHPEDVSVDGNGVLYTATG-D--------GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS   77 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~-~--------~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~   77 (173)
                      .+..|.+++++++|+||+++. .        ++|++++++++...+......|+ ||+++++++.||+++.. +.|++++
T Consensus        84 ~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pN-Gi~~s~dg~~lyv~ds~~~~i~~~~  162 (246)
T PF08450_consen   84 PFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPN-GIAFSPDGKTLYVADSFNGRIWRFD  162 (246)
T ss_dssp             CTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEE-EEEEETTSSEEEEEETTTTEEEEEE
T ss_pred             ccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCccccc-ceEECCcchheeecccccceeEEEe
Confidence            478899999999999999982 1        67999998888777777788899 99999999988999876 4677777


Q ss_pred             c--CC--c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030700           78 E--EG--V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG  150 (173)
Q Consensus        78 ~--~g--~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  150 (173)
                      .  ++  .   +.+......  ...|++|++|++|+||++...                 .++|+++++++..+..+..+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~--~g~pDG~~vD~~G~l~va~~~-----------------~~~I~~~~p~G~~~~~i~~p  223 (246)
T PF08450_consen  163 LDADGGELSNRRVFIDFPGG--PGYPDGLAVDSDGNLWVADWG-----------------GGRIVVFDPDGKLLREIELP  223 (246)
T ss_dssp             EETTTCCEEEEEEEEE-SSS--SCEEEEEEEBTTS-EEEEEET-----------------TTEEEEEETTSCEEEEEE-S
T ss_pred             ccccccceeeeeeEEEcCCC--CcCCCcceEcCCCCEEEEEcC-----------------CCEEEEECCCccEEEEEcCC
Confidence            4  23  2   222222111  135999999999999999642                 37999999994445555555


Q ss_pred             ccCcceEEE-ccCCCEEEEEec
Q 030700          151 LYFANGVAL-SEDERFLVVCES  171 (173)
Q Consensus       151 ~~~p~gi~~-~~dg~~lyv~~~  171 (173)
                      ...|..++| .++.+.||||..
T Consensus       224 ~~~~t~~~fgg~~~~~L~vTta  245 (246)
T PF08450_consen  224 VPRPTNCAFGGPDGKTLYVTTA  245 (246)
T ss_dssp             SSSEEEEEEESTTSSEEEEEEB
T ss_pred             CCCEEEEEEECCCCCEEEEEeC
Confidence            679999999 588899999964

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=99.77  E-value=1.1e-18  Score=107.53  Aligned_cols=77  Identities=51%  Similarity=0.905  Sum_probs=63.0

Q ss_pred             ccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030700           97 NDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (173)
Q Consensus        97 ~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~  173 (173)
                      |+++++++ |.+||||.+..+....+..++++..++|+|++|||.++++++++.++..||||++++|+++|+|+|++|
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~   78 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGR   78 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGG
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccC
Confidence            68999998 899999999999998888899999999999999999999999999999999999999999999999975

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=99.74  E-value=3e-16  Score=121.85  Aligned_cols=165  Identities=22%  Similarity=0.320  Sum_probs=116.2

Q ss_pred             ceecCC-ccCCcceEEEcCCCCEEEEcC------------C-CeEEEEc-C--CCc---EEEeccccCccccceEEccCC
Q 030700            2 IKLGEG-IVNHPEDVSVDGNGVLYTATG------------D-GWIKRMH-P--NGT---WEDWHQVGSQSLLGLTTTKEN   61 (173)
Q Consensus         2 ~~~~~~-~~~~p~~l~~~~~g~l~~~~~------------~-~~i~~~~-~--~g~---~~~~~~~~~~p~~gl~~~~~g   61 (173)
                      +.++.. .+..|.++++|++|+|||++.            . .+|++++ .  +|+   ...+.+....|. ||++.++|
T Consensus         5 ~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~-Gi~~~~~G   83 (367)
T TIGR02604         5 TLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVT-GLAVAVGG   83 (367)
T ss_pred             EEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCcc-ceeEecCC
Confidence            445543 589999999999999999862            1 3888886 3  454   345566677899 99999998


Q ss_pred             cEEEEEeCCCeEEEEc-cC------C-cEEEEeccCCc---cccCCccEEEcCCCcEEEEeCcCCcCcc--cceeeeccc
Q 030700           62 NVIIVCDSQQGLLKVS-EE------G-VTVLVSQFNGS---QLRFANDVIEASDGSLYFTVSSTKFTPA--EYYLDLVSG  128 (173)
Q Consensus        62 ~l~~v~~~~~~i~~~~-~~------g-~~~~~~~~~~~---~~~~~~~l~~~~dG~~~v~~~~~~~~~~--~~~~~~~~~  128 (173)
                       + ||++.. .|+++. .+      + .+.+...+...   ..+.+++++++|||.|||+.........  +......+.
T Consensus        84 -l-yV~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~  160 (367)
T TIGR02604        84 -V-YVATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQ  160 (367)
T ss_pred             -E-EEeCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCccc
Confidence             6 998644 577773 22      2 34555544332   2456899999999999999764211100  000001112


Q ss_pred             CCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       129 ~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...+.++|++|++++.+.++.++++|+|++|+++|+ +|++|.
T Consensus       161 ~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~-l~~tdn  202 (367)
T TIGR02604       161 GLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGD-VFFCDN  202 (367)
T ss_pred             ccCceEEEEecCCCeEEEEecCcCCCccceECCCCC-EEEEcc
Confidence            235799999999999999999999999999999987 688875

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=99.71  E-value=2.8e-15  Score=113.11  Aligned_cols=146  Identities=17%  Similarity=0.262  Sum_probs=108.6

Q ss_pred             CccCCcceEEEcCCCCEEEEcCC------------CeEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCC-Ce
Q 030700            7 GIVNHPEDVSVDGNGVLYTATGD------------GWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ-QG   72 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~~~------------~~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~-~~   72 (173)
                      .....|..+.++|+|.+||++..            |.|||++++|+.++.... ...|| ||+|++|++.+|++++. +.
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~N-Gla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPN-GLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecC-ceEECCCCCEEEEEeCCCCe
Confidence            35688999999999999999844            569999998887776555 77899 99999999888999987 56


Q ss_pred             EEEEcc---CC----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           73 LLKVSE---EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        73 i~~~~~---~g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      +++++-   ++    ...... .. ..-..|+++++|.+|++|++...                ..++|.+|+|++....
T Consensus       187 i~r~~~d~~~g~~~~~~~~~~-~~-~~~G~PDG~~vDadG~lw~~a~~----------------~g~~v~~~~pdG~l~~  248 (307)
T COG3386         187 IHRYDLDPATGPIGGRRGFVD-FD-EEPGLPDGMAVDADGNLWVAAVW----------------GGGRVVRFNPDGKLLG  248 (307)
T ss_pred             EEEEecCcccCccCCcceEEE-cc-CCCCCCCceEEeCCCCEEEeccc----------------CCceEEEECCCCcEEE
Confidence            777752   23    111111 11 11258999999999999975321                2249999999944455


Q ss_pred             EeeccccCcceEEE-ccCCCEEEEEec
Q 030700          146 LVLDGLYFANGVAL-SEDERFLVVCES  171 (173)
Q Consensus       146 ~~~~~~~~p~gi~~-~~dg~~lyv~~~  171 (173)
                      .+.-....|..++| .++.++|||+..
T Consensus       249 ~i~lP~~~~t~~~FgG~~~~~L~iTs~  275 (307)
T COG3386         249 EIKLPVKRPTNPAFGGPDLNTLYITSA  275 (307)
T ss_pred             EEECCCCCCccceEeCCCcCEEEEEec
Confidence            55555588889999 678899999864

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.69  E-value=3.2e-15  Score=128.82  Aligned_cols=149  Identities=19%  Similarity=0.285  Sum_probs=110.4

Q ss_pred             CCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccc---------------cCccccceEEccCCcEEEEEe
Q 030700            6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQV---------------GSQSLLGLTTTKENNVIIVCD   68 (173)
Q Consensus         6 ~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~---------------~~~p~~gl~~~~~g~l~~v~~   68 (173)
                      ..++..|.++++++ +|.|||+| .+++|.+++.+|........               ...|. ||+++++++.+||++
T Consensus       564 ~s~l~~P~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~~G~~dG~~~~a~f~~P~-GIavd~~gn~LYVaD  642 (1057)
T PLN02919        564 TSPLKFPGKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGEEGLRDGSFEDATFNRPQ-GLAYNAKKNLLYVAD  642 (1057)
T ss_pred             cccCCCCceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCCcCCCCCchhccccCCCc-EEEEeCCCCEEEEEe
Confidence            44589999999998 68999999 77899999998876543221               23599 999999887669999


Q ss_pred             CCC-eEEEEcc-CC-cEEEEec------cCC------ccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCc
Q 030700           69 SQQ-GLLKVSE-EG-VTVLVSQ------FNG------SQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG  132 (173)
Q Consensus        69 ~~~-~i~~~~~-~g-~~~~~~~------~~~------~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~  132 (173)
                      .++ .|.+++. ++ .+.+...      ..+      ..++.|.+++++| +|.+||++..                 ++
T Consensus       643 t~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~-----------------~~  705 (1057)
T PLN02919        643 TENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAG-----------------QH  705 (1057)
T ss_pred             CCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECC-----------------CC
Confidence            874 5666775 55 6555431      111      2367899999999 6789999754                 25


Q ss_pred             eEEEEcCCCCeeEEee---------------ccccCcceEEEccCCCEEEEEecC
Q 030700          133 VLLKYDPSTNQTSLVL---------------DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       133 ~v~~~d~~~~~~~~~~---------------~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +|+++|+.++.+..+.               ..+..|+||+++||+++|||+++.
T Consensus       706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~  760 (1057)
T PLN02919        706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSE  760 (1057)
T ss_pred             eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECC
Confidence            7888887766554332               125679999999999999999875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.60  E-value=1.5e-13  Score=118.66  Aligned_cols=145  Identities=24%  Similarity=0.330  Sum_probs=106.0

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCC-CcEEEec---------------cccCccccceEEccCCcEEEEEeCC
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-GTWEDWH---------------QVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~-g~~~~~~---------------~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      +..|.+++++| +|.+|+++ .+++|++++.. |.+..+.               .....|. ||+++++|+.+||++.+
T Consensus       682 ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~-GIavspdG~~LYVADs~  760 (1057)
T PLN02919        682 LNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPS-GISLSPDLKELYIADSE  760 (1057)
T ss_pred             cCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCcc-EEEEeCCCCEEEEEECC
Confidence            67899999999 78999998 67889999864 4333221               1134689 99999999855999987


Q ss_pred             -CeEEEEcc-CC-cEEEEecc-------------C----CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCC
Q 030700           71 -QGLLKVSE-EG-VTVLVSQF-------------N----GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (173)
Q Consensus        71 -~~i~~~~~-~g-~~~~~~~~-------------~----~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~  130 (173)
                       +.|.+++. ++ ...+....             +    ...+.+|.+++++++|++||++..                 
T Consensus       761 n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~-----------------  823 (1057)
T PLN02919        761 SSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSY-----------------  823 (1057)
T ss_pred             CCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECC-----------------
Confidence             46777775 34 33322100             0    013568999999999999999854                 


Q ss_pred             CceEEEEcCCCCeeEEeec--------------cccCcceEEEccCCCEEEEEecC
Q 030700          131 HGVLLKYDPSTNQTSLVLD--------------GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       131 ~~~v~~~d~~~~~~~~~~~--------------~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +++|.+||++++.+..++.              .+..|.||+++++|+ +||+|+.
T Consensus       824 N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~-lyVaDt~  878 (1057)
T PLN02919        824 NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGR-LFVADTN  878 (1057)
T ss_pred             CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCC-EEEEECC
Confidence            3689999998777654442              245799999999997 9999874

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.56  E-value=2.7e-13  Score=98.56  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=105.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      ..|..|+.+++|.+|+++ ..+.|-++|+ +|+...+. ..+..|+ +|.+.+||.. |+|+.+..|.++++ +. ++.+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Ph-giv~gpdg~~-Witd~~~aI~R~dpkt~evt~f  139 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPH-GIVVGPDGSA-WITDTGLAIGRLDPKTLEVTRF  139 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCc-eEEECCCCCe-eEecCcceeEEecCcccceEEe
Confidence            468889999999999988 6778899996 67777664 3466899 9999999999 99999989999997 55 6666


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg  163 (173)
                      .-..+. .....+...+|++|++|||...                  |.-=|.||.++.++++... ...|+|||.+|||
T Consensus       140 ~lp~~~-a~~nlet~vfD~~G~lWFt~q~------------------G~yGrLdPa~~~i~vfpaPqG~gpyGi~atpdG  200 (353)
T COG4257         140 PLPLEH-ADANLETAVFDPWGNLWFTGQI------------------GAYGRLDPARNVISVFPAPQGGGPYGICATPDG  200 (353)
T ss_pred             eccccc-CCCcccceeeCCCccEEEeecc------------------ccceecCcccCceeeeccCCCCCCcceEECCCC
Confidence            433221 1235678899999999999532                  2223667776655555432 5678999999999


Q ss_pred             CEEEEEe
Q 030700          164 RFLVVCE  170 (173)
Q Consensus       164 ~~lyv~~  170 (173)
                      . +|+++
T Consensus       201 s-vwyas  206 (353)
T COG4257         201 S-VWYAS  206 (353)
T ss_pred             c-EEEEe
Confidence            7 66663

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=99.51  E-value=6.4e-12  Score=99.02  Aligned_cols=170  Identities=15%  Similarity=0.178  Sum_probs=111.0

Q ss_pred             CceecCCccCCcceEEEcCCCCEEEEcC-CCeEEEEcCCC-cEEEe------c-c-ccCccccceEEccCC------cEE
Q 030700            1 MIKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHPNG-TWEDW------H-Q-VGSQSLLGLTTTKEN------NVI   64 (173)
Q Consensus         1 ~~~~~~~~~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~~g-~~~~~------~-~-~~~~p~~gl~~~~~g------~l~   64 (173)
                      ++.++.+ |..|.++++.|+|++||+.. .|+|++++.++ ....+      . . ..+.+. ||+++|+=      +.+
T Consensus        22 ~~~va~G-L~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLl-glal~PdF~~~~~n~~l   99 (454)
T TIGR03606        22 KKVLLSG-LNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLL-GLALHPDFMQEKGNPYV   99 (454)
T ss_pred             EEEEECC-CCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCcee-eEEECCCccccCCCcEE
Confidence            3567777 99999999999999999996 69999997543 22111      1 1 234577 99998762      345


Q ss_pred             EEEeC----------CCeEEEEcc--C-C----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcC--c---cc-c
Q 030700           65 IVCDS----------QQGLLKVSE--E-G----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFT--P---AE-Y  121 (173)
Q Consensus        65 ~v~~~----------~~~i~~~~~--~-g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~--~---~~-~  121 (173)
                      |++-.          ...|.++..  + .    .+.+.........+.-..|+++|||.|||+.......  .   .+ .
T Consensus       100 Yvsyt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~  179 (454)
T TIGR03606       100 YISYTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQ  179 (454)
T ss_pred             EEEEeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCCCCCCcccccCcch
Confidence            88741          235666542  1 1    2333333332233556789999999999986553210  0   00 0


Q ss_pred             eee------e---cccCCCceEEEEcCCCC-----------eeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030700          122 YLD------L---VSGEPHGVLLKYDPSTN-----------QTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (173)
Q Consensus       122 ~~~------~---~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~  173 (173)
                      ...      .   -.....|+|+|+++++.           ..+.++.++++|.||+|+|+|+ ||++|.++
T Consensus       180 aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~G~RNp~Gla~dp~G~-Lw~~e~Gp  250 (454)
T TIGR03606       180 AQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTYGHRNPQGLAFTPDGT-LYASEQGP  250 (454)
T ss_pred             hccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEEeccccceeEECCCCC-EEEEecCC
Confidence            000      0   11234689999999843           2467888999999999999765 99998753

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=8.7e-12  Score=96.25  Aligned_cols=147  Identities=21%  Similarity=0.316  Sum_probs=95.3

Q ss_pred             cCCcceEEEcCCC-CEEEEc-CCCeEEEEcCC---CcEEE----eccccCccccceEEccCCcEEEEEeCCC-eEEEEc-
Q 030700            9 VNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN---GTWED----WHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-   77 (173)
Q Consensus         9 ~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~---g~~~~----~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~-   77 (173)
                      -..|.++.++|+| .+|+++ ...+|+.++.+   +++..    -.+.+..|. +++|+++|+++|+.+... .|..++ 
T Consensus       143 ~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR-h~~f~pdg~~~Yv~~e~s~~v~v~~~  221 (345)
T PF10282_consen  143 GPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR-HLAFSPDGKYAYVVNELSNTVSVFDY  221 (345)
T ss_dssp             STCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEE-EEEE-TTSSEEEEEETTTTEEEEEEE
T ss_pred             cccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCc-EEEEcCCcCEEEEecCCCCcEEEEee
Confidence            4678899999987 588888 66778777632   23433    134567899 999999999989987664 444444 


Q ss_pred             --cCC-cEEEEec--c-CCc-cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec
Q 030700           78 --EEG-VTVLVSQ--F-NGS-QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD  149 (173)
Q Consensus        78 --~~g-~~~~~~~--~-~~~-~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  149 (173)
                        .+| ++.+...  . .+. ....+.+|+++|||+ +|+++...               ..=.++.+|+.+++++.+..
T Consensus       222 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~---------------~sI~vf~~d~~~g~l~~~~~  286 (345)
T PF10282_consen  222 DPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGS---------------NSISVFDLDPATGTLTLVQT  286 (345)
T ss_dssp             ETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTT---------------TEEEEEEECTTTTTEEEEEE
T ss_pred             cccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccC---------------CEEEEEEEecCCCceEEEEE
Confidence              355 4433221  1 111 123789999999997 78886431               11245666666676655432


Q ss_pred             ---cccCcceEEEccCCCEEEEEec
Q 030700          150 ---GLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       150 ---~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                         +...|.+|+++|+|++|||++-
T Consensus       287 ~~~~G~~Pr~~~~s~~g~~l~Va~~  311 (345)
T PF10282_consen  287 VPTGGKFPRHFAFSPDGRYLYVANQ  311 (345)
T ss_dssp             EEESSSSEEEEEE-TTSSEEEEEET
T ss_pred             EeCCCCCccEEEEeCCCCEEEEEec
Confidence               3567999999999999999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=99.46  E-value=3.5e-12  Score=97.84  Aligned_cols=158  Identities=19%  Similarity=0.255  Sum_probs=101.4

Q ss_pred             cCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcE-EEec-------cccCccccceEEccC----CcEEEEEeCC------
Q 030700            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTW-EDWH-------QVGSQSLLGLTTTKE----NNVIIVCDSQ------   70 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~-~~~~-------~~~~~p~~gl~~~~~----g~l~~v~~~~------   70 (173)
                      |+.|.++++.|+|++||+...|+|++++.+|.. ..+.       ....... |++++++    +.+ |++-..      
T Consensus         1 L~~P~~~a~~pdG~l~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gll-gia~~p~f~~n~~l-Yv~~t~~~~~~~   78 (331)
T PF07995_consen    1 LNNPRSMAFLPDGRLLVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLL-GIAFHPDFASNGYL-YVYYTNADEDGG   78 (331)
T ss_dssp             ESSEEEEEEETTSCEEEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEE-EEEE-TTCCCC-EE-EEEEEEE-TSSS
T ss_pred             CCCceEEEEeCCCcEEEEeCCceEEEEeCCCcCcceecccccccccccCCcc-cceeccccCCCCEE-EEEEEcccCCCC
Confidence            578999999999999999999999999877765 2221       1123467 9999984    555 877542      


Q ss_pred             ---CeEEEEcc--C-C----cEEEEeccCC--ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030700           71 ---QGLLKVSE--E-G----VTVLVSQFNG--SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (173)
Q Consensus        71 ---~~i~~~~~--~-g----~~~~~~~~~~--~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  138 (173)
                         ..|.++..  . .    .+.+......  ...+....|+++|||.|||+-.....  .....  ......|+|+|++
T Consensus        79 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~--~~~~~--~~~~~~G~ilri~  154 (331)
T PF07995_consen   79 DNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGN--DDNAQ--DPNSLRGKILRID  154 (331)
T ss_dssp             SEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTT--GGGGC--STTSSTTEEEEEE
T ss_pred             CcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCC--ccccc--ccccccceEEEec
Confidence               24666552  2 1    2333332222  23356678999999999998654322  11000  1123468999999


Q ss_pred             CCCC-------------eeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          139 PSTN-------------QTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       139 ~~~~-------------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +++.             ..+.++.++++|.+++|+|....||++|.+
T Consensus       155 ~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G  201 (331)
T PF07995_consen  155 PDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNG  201 (331)
T ss_dssp             TTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-
T ss_pred             ccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccC
Confidence            8743             356788899999999999994469999865

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.38  E-value=1e-10  Score=90.31  Aligned_cols=146  Identities=21%  Similarity=0.323  Sum_probs=92.5

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEE--EcCCCcEEEec--------------cccCccccceEEccCCcEEEEEeCC-
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKR--MHPNGTWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDSQ-   70 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~--~~~~g~~~~~~--------------~~~~~p~~gl~~~~~g~l~~v~~~~-   70 (173)
                      ..|-.++++|++ .||++. ..+.+..  ++.+|++....              +....|+ .+.++|+|+.+|+++.+ 
T Consensus        87 ~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H-~v~~~pdg~~v~v~dlG~  165 (345)
T PF10282_consen   87 SSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPH-QVVFSPDGRFVYVPDLGA  165 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEE-EEEE-TTSSEEEEEETTT
T ss_pred             CCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccce-eEEECCCCCEEEEEecCC
Confidence            578899999987 577887 5677654  44567544321              2345789 99999999998999977 


Q ss_pred             CeEEEEc--cC-C-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           71 QGLLKVS--EE-G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        71 ~~i~~~~--~~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      +.|..++  .. + +.... ...-.+...|..|+++|||+ +|+++...               ..=.++.++..++..+
T Consensus       166 D~v~~~~~~~~~~~l~~~~-~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s---------------~~v~v~~~~~~~g~~~  229 (345)
T PF10282_consen  166 DRVYVYDIDDDTGKLTPVD-SIKVPPGSGPRHLAFSPDGKYAYVVNELS---------------NTVSVFDYDPSDGSLT  229 (345)
T ss_dssp             TEEEEEEE-TTS-TEEEEE-EEECSTTSSEEEEEE-TTSSEEEEEETTT---------------TEEEEEEEETTTTEEE
T ss_pred             CEEEEEEEeCCCceEEEee-ccccccCCCCcEEEEcCCcCEEEEecCCC---------------CcEEEEeecccCCcee
Confidence            4555555  32 2 33322 12223346899999999996 78885321               1124455554456544


Q ss_pred             Eeec------c---ccCcceEEEccCCCEEEEEecC
Q 030700          146 LVLD------G---LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       146 ~~~~------~---~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .+..      +   ...|.+|+++|||++|||++.+
T Consensus       230 ~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~  265 (345)
T PF10282_consen  230 EIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG  265 (345)
T ss_dssp             EEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT
T ss_pred             EEEEeeeccccccccCCceeEEEecCCCEEEEEecc
Confidence            4321      1   1367899999999999999864

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.31  E-value=4.4e-10  Score=86.12  Aligned_cols=142  Identities=7%  Similarity=0.083  Sum_probs=93.2

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEc--CCCcEEEe--ccccCccccceEEccCCcEEEEEeCCC-eEEEEc--cCC
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EEG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~--~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~--~~g   80 (173)
                      ..|..++++|+|+ ||++. ..+.|..++  .+|++...  ....+.|. +++++++|+.+|++.... .+..++  .+|
T Consensus        35 ~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~-~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g  113 (330)
T PRK11028         35 GQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPT-HISTDHQGRFLFSASYNANCVSVSPLDKDG  113 (330)
T ss_pred             CCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCCCce-EEEECCCCCEEEEEEcCCCeEEEEEECCCC
Confidence            5689999999884 78876 567775554  35655432  23345789 999999999889887654 344443  355


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEE------eeccc
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSL------VLDGL  151 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~------~~~~~  151 (173)
                       .........+  ...|+.++++|+|+ +|+++..                 ++.|..||.++ +.+..      -....
T Consensus       114 ~~~~~~~~~~~--~~~~~~~~~~p~g~~l~v~~~~-----------------~~~v~v~d~~~~g~l~~~~~~~~~~~~g  174 (330)
T PRK11028        114 IPVAPIQIIEG--LEGCHSANIDPDNRTLWVPCLK-----------------EDRIRLFTLSDDGHLVAQEPAEVTTVEG  174 (330)
T ss_pred             CCCCceeeccC--CCcccEeEeCCCCCEEEEeeCC-----------------CCEEEEEEECCCCcccccCCCceecCCC
Confidence             3222222222  24689999999996 6677532                 35677777654 33221      11224


Q ss_pred             cCcceEEEccCCCEEEEEec
Q 030700          152 YFANGVALSEDERFLVVCES  171 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ..|++++|+|||+++||++.
T Consensus       175 ~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        175 AGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             CCCceEEECCCCCEEEEEec
Confidence            67899999999999999874

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.30  E-value=3.2e-10  Score=86.89  Aligned_cols=144  Identities=12%  Similarity=0.160  Sum_probs=88.5

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC--CCcEEE---eccccCccccceEEccCCcEEEEEeCCC-eEEEEc--cC
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP--NGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--EE   79 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~--~g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~--~~   79 (173)
                      ..|.+++++|+|+ ||++. .++.|..++.  +|....   .......|+ +++++++|+.+|+++... .|..++  .+
T Consensus        80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~-~~~~~p~g~~l~v~~~~~~~v~v~d~~~~  158 (330)
T PRK11028         80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCH-SANIDPDNRTLWVPCLKEDRIRLFTLSDD  158 (330)
T ss_pred             CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCccc-EeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence            3689999999885 77776 5677776653  453321   112335689 999999999989988774 454444  33


Q ss_pred             C-cEEE-EeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEE--EEcCCCCeeEEeec-----
Q 030700           80 G-VTVL-VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLL--KYDPSTNQTSLVLD-----  149 (173)
Q Consensus        80 g-~~~~-~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~--~~d~~~~~~~~~~~-----  149 (173)
                      | .... .....-.....|++++++|||+ +|+++..                 +++|.  .++..+++.+.+..     
T Consensus       159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~-----------------~~~v~v~~~~~~~~~~~~~~~~~~~p  221 (330)
T PRK11028        159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNEL-----------------NSSVDVWQLKDPHGEIECVQTLDMMP  221 (330)
T ss_pred             CcccccCCCceecCCCCCCceEEECCCCCEEEEEecC-----------------CCEEEEEEEeCCCCCEEEEEEEecCC
Confidence            4 3211 0000111125799999999997 6777532                 24554  44433444333221     


Q ss_pred             ----cccCcceEEEccCCCEEEEEec
Q 030700          150 ----GLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       150 ----~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                          +...+.+|+++||+++||+++.
T Consensus       222 ~~~~~~~~~~~i~~~pdg~~lyv~~~  247 (330)
T PRK11028        222 ADFSDTRWAADIHITPDGRHLYACDR  247 (330)
T ss_pred             CcCCCCccceeEEECCCCCEEEEecC
Confidence                1224457999999999999864

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.24  E-value=1e-09  Score=78.55  Aligned_cols=138  Identities=18%  Similarity=0.147  Sum_probs=96.7

Q ss_pred             EEEcCCCCEEEEc----------CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEE--c-cCC
Q 030700           15 VSVDGNGVLYTAT----------GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKV--S-EEG   80 (173)
Q Consensus        15 l~~~~~g~l~~~~----------~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~--~-~~g   80 (173)
                      =-+||+|+.|.+.          ..+.++++-+.+++..+....+.++ ||++|.+.+.+|+.+.-+ .+-..  + +.|
T Consensus       114 gkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsN-gl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG  192 (310)
T KOG4499|consen  114 GKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISN-GLAWDSDAKKFYYIDSLNYEVDAYDYDCPTG  192 (310)
T ss_pred             CccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCc-cccccccCcEEEEEccCceEEeeeecCCCcc
Confidence            3568899988655          1356777877888887778888999 999999998889988764 35333  3 455


Q ss_pred             ----cEEEEeccCCccc--cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccC
Q 030700           81 ----VTVLVSQFNGSQL--RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYF  153 (173)
Q Consensus        81 ----~~~~~~~~~~~~~--~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~  153 (173)
                          ...+.+....+++  .-|++|++|.+|++||+..+                 .++|+++||.||++-+- .-....
T Consensus       193 ~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n-----------------g~~V~~~dp~tGK~L~eiklPt~q  255 (310)
T KOG4499|consen  193 DLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN-----------------GGTVQKVDPTTGKILLEIKLPTPQ  255 (310)
T ss_pred             cccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec-----------------CcEEEEECCCCCcEEEEEEcCCCc
Confidence                2333333332332  36999999999999999753                 37999999999875322 223444


Q ss_pred             cceEEEc-cCCCEEEEEe
Q 030700          154 ANGVALS-EDERFLVVCE  170 (173)
Q Consensus       154 p~gi~~~-~dg~~lyv~~  170 (173)
                      ...+||. ++-..+||+-
T Consensus       256 itsccFgGkn~d~~yvT~  273 (310)
T KOG4499|consen  256 ITSCCFGGKNLDILYVTT  273 (310)
T ss_pred             eEEEEecCCCccEEEEEe
Confidence            5678884 5566888874

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.21  E-value=2.8e-09  Score=80.08  Aligned_cols=146  Identities=17%  Similarity=0.253  Sum_probs=93.8

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEE--EEcCCCcEEEe---ccc----------cCccccceEEccCCcEEEEEeCC-C
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIK--RMHPNGTWEDW---HQV----------GSQSLLGLTTTKENNVIIVCDSQ-Q   71 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~--~~~~~g~~~~~---~~~----------~~~p~~gl~~~~~g~l~~v~~~~-~   71 (173)
                      ..|-.+++|++|+ ||++. ..|.|.  .+..+|.+...   ...          ...++ -..++|++++|++++-+ +
T Consensus        89 ~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H-~a~~tP~~~~l~v~DLG~D  167 (346)
T COG2706          89 SPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVH-SANFTPDGRYLVVPDLGTD  167 (346)
T ss_pred             CCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccc-eeeeCCCCCEEEEeecCCc
Confidence            4568899999985 55555 445544  44557764322   111          12366 77789999998899877 5


Q ss_pred             eEEEEc-cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           72 GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        72 ~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      ++...+ .+| ++... ...-++...|..|+++|+|. .|+.+.-               .+.=.++.|++..++.+.+-
T Consensus       168 ri~~y~~~dg~L~~~~-~~~v~~G~GPRHi~FHpn~k~aY~v~EL---------------~stV~v~~y~~~~g~~~~lQ  231 (346)
T COG2706         168 RIFLYDLDDGKLTPAD-PAEVKPGAGPRHIVFHPNGKYAYLVNEL---------------NSTVDVLEYNPAVGKFEELQ  231 (346)
T ss_pred             eEEEEEcccCcccccc-ccccCCCCCcceEEEcCCCcEEEEEecc---------------CCEEEEEEEcCCCceEEEee
Confidence            666655 477 43322 22224557899999999998 5776421               12235677787667766554


Q ss_pred             cc------c---cCcceEEEccCCCEEEEEecC
Q 030700          149 DG------L---YFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       149 ~~------~---~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .-      +   .....|.+++|||+||+++.+
T Consensus       232 ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg  264 (346)
T COG2706         232 TIDTLPEDFTGTNWAAAIHISPDGRFLYASNRG  264 (346)
T ss_pred             eeccCccccCCCCceeEEEECCCCCEEEEecCC
Confidence            32      2   233458999999999999864

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.20  E-value=4.1e-09  Score=82.48  Aligned_cols=144  Identities=19%  Similarity=0.240  Sum_probs=105.1

Q ss_pred             CcceEEEcCCC-CEEEEcC---CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEccCCcEEE
Q 030700           11 HPEDVSVDGNG-VLYTATG---DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEGVTVL   84 (173)
Q Consensus        11 ~p~~l~~~~~g-~l~~~~~---~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g~~~~   84 (173)
                      .|.++++++++ .+|+++.   ++.+..+|.. ++.......+..|. +++++++|..+|+++.. +.+..++..+....
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P~-~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTPT-GVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCcc-eEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            79999999976 8999995   5788999864 45555544555788 99999999977999955 45666776552111


Q ss_pred             -Eecc-CCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe---eccccCcceEE
Q 030700           85 -VSQF-NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVA  158 (173)
Q Consensus        85 -~~~~-~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~p~gi~  158 (173)
                       .... .-.....|.+++++++|. +|+++...               .++.+.++|..++.....   .... .|.+++
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~---------------~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~  259 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGS---------------GSNNVLKIDTATGNVTATDLPVGSG-APRGVA  259 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccC---------------CCceEEEEeCCCceEEEeccccccC-CCCcee
Confidence             1110 112346899999999996 89987541               236899999988766544   2234 789999


Q ss_pred             EccCCCEEEEEec
Q 030700          159 LSEDERFLVVCES  171 (173)
Q Consensus       159 ~~~dg~~lyv~~~  171 (173)
                      ++|+|+.+|+++.
T Consensus       260 ~~p~g~~~yv~~~  272 (381)
T COG3391         260 VDPAGKAAYVANS  272 (381)
T ss_pred             ECCCCCEEEEEec
Confidence            9999999999865

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=99.19  E-value=1.6e-09  Score=79.15  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=107.2

Q ss_pred             ccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEecccc---CccccceEEccCCcEEEEEeCCC-eEEEEccCC-
Q 030700            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVG---SQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-   80 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~---~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-   80 (173)
                      +=.+|.|++..|+|.+|++. .+..|-++|+ ++..+++....   .... .+-.|+.|++ |+++.+. .++++++.- 
T Consensus       187 qG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~~~gsR-riwsdpig~~-wittwg~g~l~rfdPs~~  264 (353)
T COG4257         187 QGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNALKAGSR-RIWSDPIGRA-WITTWGTGSLHRFDPSVT  264 (353)
T ss_pred             CCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCccccccc-ccccCccCcE-EEeccCCceeeEeCcccc
Confidence            33689999999999999988 6678999995 67655553322   2345 6667899999 9988764 588888643 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                       -...  .+.+. ...|.+|.+|..|++|+++..                 .+.|.||||++.+.+++...-.+++.+++
T Consensus       265 sW~ey--pLPgs-~arpys~rVD~~grVW~sea~-----------------agai~rfdpeta~ftv~p~pr~n~gn~ql  324 (353)
T COG4257         265 SWIEY--PLPGS-KARPYSMRVDRHGRVWLSEAD-----------------AGAIGRFDPETARFTVLPIPRPNSGNIQL  324 (353)
T ss_pred             cceee--eCCCC-CCCcceeeeccCCcEEeeccc-----------------cCceeecCcccceEEEecCCCCCCCceec
Confidence             1111  12222 147899999999999999754                 37899999999888888877788888999


Q ss_pred             ccCCCEEEEEecC
Q 030700          160 SEDERFLVVCESW  172 (173)
Q Consensus       160 ~~dg~~lyv~~~~  172 (173)
                      ++....+|.+|.+
T Consensus       325 ~gr~ge~W~~e~g  337 (353)
T COG4257         325 DGRPGELWFTEAG  337 (353)
T ss_pred             cCCCCceeecccC
Confidence            8877778888754

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.16  E-value=8.1e-09  Score=77.60  Aligned_cols=143  Identities=15%  Similarity=0.162  Sum_probs=99.8

Q ss_pred             cceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEEEe----ccccCccccceEEccCCcEEEEEeCC-CeEEEEc--c-CC
Q 030700           12 PEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDW----HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--E-EG   80 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~~~----~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--~-~g   80 (173)
                      +....++|+| .|++.| ...+|+.++. +|++...    ..++..|. .|+|+|+++++|+...- +.|..+.  . .|
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPR-Hi~FHpn~k~aY~v~EL~stV~v~~y~~~~g  225 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPR-HIVFHPNGKYAYLVNELNSTVDVLEYNPAVG  225 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcc-eEEEcCCCcEEEEEeccCCEEEEEEEcCCCc
Confidence            5677888988 577777 6667766653 7765432    35577899 99999999999976654 4444443  3 35


Q ss_pred             -cEEEEec---cC-CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---cc
Q 030700           81 -VTVLVSQ---FN-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GL  151 (173)
Q Consensus        81 -~~~~~~~---~~-~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~  151 (173)
                       ++.+...   .+ -...++..+|.+++||+ +|+++...               .+=.++++|+.+++++.+..   ..
T Consensus       226 ~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~---------------dsI~~f~V~~~~g~L~~~~~~~teg  290 (346)
T COG2706         226 KFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGH---------------DSIAVFSVDPDGGKLELVGITPTEG  290 (346)
T ss_pred             eEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCC---------------CeEEEEEEcCCCCEEEEEEEeccCC
Confidence             5544322   11 12236788999999998 67776431               12378999999887766643   35


Q ss_pred             cCcceEEEccCCCEEEEEe
Q 030700          152 YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..|.+..|++.|++|+++.
T Consensus       291 ~~PR~F~i~~~g~~Liaa~  309 (346)
T COG2706         291 QFPRDFNINPSGRFLIAAN  309 (346)
T ss_pred             cCCccceeCCCCCEEEEEc
Confidence            7799999999999999974

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=99.11  E-value=6.8e-09  Score=88.62  Aligned_cols=140  Identities=20%  Similarity=0.284  Sum_probs=95.6

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEc-CC-----CcEEEe----------cccc-----------CccccceEEcc
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMH-PN-----GTWEDW----------HQVG-----------SQSLLGLTTTK   59 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~-~~-----g~~~~~----------~~~~-----------~~p~~gl~~~~   59 (173)
                      ...--.+|++| +|.||+++ ...+|+|+. ..     +.+..+          .+.+           ..|. ||++|+
T Consensus       406 ~sh~Yy~AvsPvdgtlyvSdp~s~qv~rv~sl~~~d~~~N~evvaG~Ge~Clp~desCGDGalA~dA~L~~Pk-GIa~dk  484 (1899)
T KOG4659|consen  406 TSHSYYIAVSPVDGTLYVSDPLSKQVWRVSSLEPQDSRNNYEVVAGDGEVCLPADESCGDGALAQDAQLIFPK-GIAFDK  484 (1899)
T ss_pred             ccceeEEEecCcCceEEecCCCcceEEEeccCCccccccCeeEEeccCcCccccccccCcchhcccceeccCC-ceeEcc
Confidence            34455699999 99999999 567899885 11     223322          1111           1399 999999


Q ss_pred             CCcEEEEEeCCCeEEEEccCC-cEEEEecc---------------CCccccCCccEEEcC-CCcEEEEeCcCCcCcccce
Q 030700           60 ENNVIIVCDSQQGLLKVSEEG-VTVLVSQF---------------NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYY  122 (173)
Q Consensus        60 ~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~---------------~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~  122 (173)
                      +|.+ |+++.. .|..+|.+| ++.+...-               ..-.+.+|.+|+++| |+.+||-|..         
T Consensus       485 ~g~l-YfaD~t-~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT~LaV~Pmdnsl~Vld~n---------  553 (1899)
T KOG4659|consen  485 MGNL-YFADGT-RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPTSLAVDPMDNSLLVLDTN---------  553 (1899)
T ss_pred             CCcE-EEeccc-EEEEeccCceEEEeccCCCCccCccccccccchhheeeecccceeecCCCCeEEEeecc---------
Confidence            9998 999854 688889899 66554221               112356999999999 8999998753         


Q ss_pred             eeecccCCCceEEEEcCCCCeeEEeec---------------------cccCcceEEEccCCCEEEEEecC
Q 030700          123 LDLVSGEPHGVLLKYDPSTNQTSLVLD---------------------GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       123 ~~~~~~~~~~~v~~~d~~~~~~~~~~~---------------------~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                                -|+++++. +.++..+.                     .+..+..|+++++| .|||+|+.
T Consensus       554 ----------vvlrit~~-~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G-~lyvaEsD  612 (1899)
T KOG4659|consen  554 ----------VVLRITVV-HRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDG-ALYVAESD  612 (1899)
T ss_pred             ----------eEEEEccC-ccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCc-eEEEEecc
Confidence                      45555554 33332221                     13445789999999 49999874

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.09  E-value=4.2e-08  Score=73.26  Aligned_cols=140  Identities=14%  Similarity=0.117  Sum_probs=89.4

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEccCCcEEEE
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEGVTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g~~~~~   85 (173)
                      ..|.+++++|+|. +|++. .++.|+.++.. ++..........+. .++++++++.+|++... ..+..++....+.+.
T Consensus        31 ~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~  109 (300)
T TIGR03866        31 QRPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDPE-LFALHPNGKILYIANEDDNLVTVIDIETRKVLA  109 (300)
T ss_pred             CCCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCcc-EEEECCCCCEEEEEcCCCCeEEEEECCCCeEEe
Confidence            4578899999885 67665 67889999854 55544333344577 89999999876777654 346666643311111


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~  165 (173)
                      ....+   ..+.+++++|+|.++++...                ....+..+|.++++..........|..++|+|+++.
T Consensus       110 ~~~~~---~~~~~~~~~~dg~~l~~~~~----------------~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~  170 (300)
T TIGR03866       110 EIPVG---VEPEGMAVSPDGKIVVNTSE----------------TTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKE  170 (300)
T ss_pred             EeeCC---CCcceEEECCCCCEEEEEec----------------CCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCE
Confidence            11111   34788999999987665321                112455678776654333222345788999999998


Q ss_pred             EEEE
Q 030700          166 LVVC  169 (173)
Q Consensus       166 lyv~  169 (173)
                      ||++
T Consensus       171 l~~~  174 (300)
T TIGR03866       171 LWVS  174 (300)
T ss_pred             EEEE
Confidence            8876

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=99.08  E-value=2.7e-08  Score=77.89  Aligned_cols=142  Identities=19%  Similarity=0.208  Sum_probs=102.6

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCCcEE
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEGVTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g~~~   83 (173)
                      ..|.++++.+.| ++|+.. ....|..++.. .+.......+..|. +++++++++.+|+++..   +.+..++......
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~-~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~  152 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPV-GLAVDPDGKYVYVANAGNGNNTVSVIDAATNKV  152 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCc-eEEECCCCCEEEEEecccCCceEEEEeCCCCeE
Confidence            678999999977 599888 55789999843 33344445555899 99999999777999984   3566677543111


Q ss_pred             EEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE-----eeccccCcceE
Q 030700           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VLDGLYFANGV  157 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~~~~~p~gi  157 (173)
                      ......+   ..|.+++++|+|. +|+++.                 .+++|..+|+.+..+..     .......|.++
T Consensus       153 ~~~~~vG---~~P~~~a~~p~g~~vyv~~~-----------------~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i  212 (381)
T COG3391         153 TATIPVG---NTPTGVAVDPDGNKVYVTNS-----------------DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGI  212 (381)
T ss_pred             EEEEecC---CCcceEEECCCCCeEEEEec-----------------CCCeEEEEeCCCcceeccccccccccCCCCceE
Confidence            1112222   2579999999997 999973                 34689999987555443     23347889999


Q ss_pred             EEccCCCEEEEEecC
Q 030700          158 ALSEDERFLVVCESW  172 (173)
Q Consensus       158 ~~~~dg~~lyv~~~~  172 (173)
                      +++|+|+.+||++..
T Consensus       213 ~v~~~g~~~yV~~~~  227 (381)
T COG3391         213 AVDPDGNRVYVANDG  227 (381)
T ss_pred             EECCCCCEEEEEecc
Confidence            999999999999865

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=98.99  E-value=3.1e-08  Score=76.90  Aligned_cols=166  Identities=14%  Similarity=0.153  Sum_probs=97.1

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcCC-CeEEEEcCCC--------cEEEeccc----------------cCccccceE
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATGD-GWIKRMHPNG--------TWEDWHQV----------------GSQSLLGLT   56 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~-~~i~~~~~~g--------~~~~~~~~----------------~~~p~~gl~   56 (173)
                      +.+.++ ++.|.++++.|+|.+.++... |.+..+...+        ........                ...+. +++
T Consensus        60 ~~~a~g-Le~p~~~~~lP~G~~~v~er~~G~l~~i~~g~~~~~~~~~~~~~~~~~~~Gll~~al~~~fa~~~~~~~-~~a  137 (399)
T COG2133          60 EVVAQG-LEHPWGLARLPDGVLLVTERPTGRLRLISDGGSASPPVSTVPIVLLRGQGGLLDIALSPDFAQGRLVYF-GIS  137 (399)
T ss_pred             cccccc-ccCchhheecCCceEEEEccCCccEEEecCCCcccccccccceEEeccCCCccceEecccccccceeee-EEE
Confidence            456677 999999999999977777744 6666553211        11111111                11233 444


Q ss_pred             EccCCcEEEEEeCCCeEEEEcc-CC----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCc-----ccceeeec
Q 030700           57 TTKENNVIIVCDSQQGLLKVSE-EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP-----AEYYLDLV  126 (173)
Q Consensus        57 ~~~~g~l~~v~~~~~~i~~~~~-~g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~-----~~~~~~~~  126 (173)
                      + +.+.+ |+++.. .+.+++. +.    ...+...+++...++-..|+++|||+|||+-.+...-.     ......++
T Consensus       138 ~-~~~~~-~~~n~~-~~~~~~~g~~~l~~~~~i~~~lP~~~~H~g~~l~f~pDG~Lyvs~G~~~~~~~aq~~~~~~Gk~~  214 (399)
T COG2133         138 E-PGGGL-YVANRV-AIGRLPGGDTKLSEPKVIFRGIPKGGHHFGGRLVFGPDGKLYVTTGSNGDPALAQDNVSLAGKVL  214 (399)
T ss_pred             e-ecCCc-eEEEEE-EEEEcCCCccccccccEEeecCCCCCCcCcccEEECCCCcEEEEeCCCCCcccccCcccccccee
Confidence            4 22233 444322 3455551 11    23333344433356778999999999999976641100     00000111


Q ss_pred             ccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030700          127 SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~  173 (173)
                      +. ....+...|+.+...+++..+.++|.|++|+|....||++|.++
T Consensus       215 r~-~~a~~~~~d~p~~~~~i~s~G~RN~qGl~w~P~tg~Lw~~e~g~  260 (399)
T COG2133         215 RI-DRAGIIPADNPFPNSEIWSYGHRNPQGLAWHPVTGALWTTEHGP  260 (399)
T ss_pred             ee-ccCcccccCCCCCCcceEEeccCCccceeecCCCCcEEEEecCC
Confidence            11 12355566666667788999999999999999966799998764

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.97  E-value=4.5e-08  Score=76.26  Aligned_cols=142  Identities=13%  Similarity=0.200  Sum_probs=87.0

Q ss_pred             cceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC--cEEEE
Q 030700           12 PEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG--VTVLV   85 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g--~~~~~   85 (173)
                      +.++++.++| .+|+++.++.|..+|. +++...-...+..|. |+++++||+++|+++.. +.+..+|. +.  +..+.
T Consensus        39 h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~-~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~  117 (369)
T PF02239_consen   39 HAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPR-GIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIP  117 (369)
T ss_dssp             EEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEE-EEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE
T ss_pred             eeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcc-eEEEcCCCCEEEEEecCCCceeEeccccccceeecc
Confidence            4557788888 5999888899999995 566666567788899 99999999998888865 45666674 33  33332


Q ss_pred             ec-cCC-ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE--EeeccccCcceEEEcc
Q 030700           86 SQ-FNG-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSE  161 (173)
Q Consensus        86 ~~-~~~-~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~~~~p~gi~~~~  161 (173)
                      .. ... .+..++.++..++....|+.+..                ..+.++.+|....+..  ........|.+..|+|
T Consensus       118 ~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----------------d~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dp  181 (369)
T PF02239_consen  118 TGGMPVDGPESRVAAIVASPGRPEFVVNLK----------------DTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDP  181 (369)
T ss_dssp             --EE-TTTS---EEEEEE-SSSSEEEEEET----------------TTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-T
T ss_pred             cccccccccCCCceeEEecCCCCEEEEEEc----------------cCCeEEEEEeccccccceeeecccccccccccCc
Confidence            11 110 12234566777777765665321                3468898886543221  2233457889999999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ++|+++++.
T Consensus       182 dgry~~va~  190 (369)
T PF02239_consen  182 DGRYFLVAA  190 (369)
T ss_dssp             TSSEEEEEE
T ss_pred             ccceeeecc
Confidence            999999864

...

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=98.95  E-value=2.2e-07  Score=69.36  Aligned_cols=127  Identities=19%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEcc-CC-cEEEEeccCCccccC
Q 030700           21 GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG-VTVLVSQFNGSQLRF   95 (173)
Q Consensus        21 g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g-~~~~~~~~~~~~~~~   95 (173)
                      +.+|++. .++.|+.|+. +++..........+. +++++++|+.+|++.... .+..++. ++ .......  +   ..
T Consensus         1 ~~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~~~~-~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--~---~~   74 (300)
T TIGR03866         1 EKAYVSNEKDNTISVIDTATLEVTRTFPVGQRPR-GITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS--G---PD   74 (300)
T ss_pred             CcEEEEecCCCEEEEEECCCCceEEEEECCCCCC-ceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC--C---CC
Confidence            4677776 6788999986 455544334455688 999999998767776543 4666664 44 2221111  1   24


Q ss_pred             CccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        96 ~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +..++++|+|+ +|++..                 .++.+..+|..+++..........|.+++|+|+++.++++.
T Consensus        75 ~~~~~~~~~g~~l~~~~~-----------------~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~  133 (300)
T TIGR03866        75 PELFALHPNGKILYIANE-----------------DDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTS  133 (300)
T ss_pred             ccEEEECCCCCEEEEEcC-----------------CCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEe
Confidence            57789999987 566532                 23688999988665433333234578999999999887764

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=98.92  E-value=2.6e-08  Score=77.61  Aligned_cols=102  Identities=17%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcCCCeEEEE-cCCC------cEEEeccc--------cCccccceEEccCCcEEEE
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRM-HPNG------TWEDWHQV--------GSQSLLGLTTTKENNVIIV   66 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~-~~~g------~~~~~~~~--------~~~p~~gl~~~~~g~l~~v   66 (173)
                      +.++++ +..|.++++.++| |||++. ..|+++ +.++      +.+.+...        ...++ ++++++||++ |+
T Consensus        65 ~vfa~~-l~~p~Gi~~~~~G-lyV~~~-~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~-~l~~gpDG~L-Yv  139 (367)
T TIGR02604        65 NVFAEE-LSMVTGLAVAVGG-VYVATP-PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLN-SLAWGPDGWL-YF  139 (367)
T ss_pred             EEeecC-CCCccceeEecCC-EEEeCC-CeEEEEeCCCCCCCCCCccEEEEEccCCCCCccccccc-CceECCCCCE-EE
Confidence            345566 8899999999998 999874 468888 4332      33333221        12377 9999999998 99


Q ss_pred             EeCC--------------------CeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           67 CDSQ--------------------QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        67 ~~~~--------------------~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      +...                    .+++++++++  .+.+...     +..|++++++++|.+|++|+.
T Consensus       140 ~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G-----~rnp~Gl~~d~~G~l~~tdn~  203 (367)
T TIGR02604       140 NHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHG-----FQNPYGHSVDSWGDVFFCDND  203 (367)
T ss_pred             ecccCCCceeccCCCccCcccccCceEEEEecCCCeEEEEecC-----cCCCccceECCCCCEEEEccC
Confidence            7651                    2488888876  5555432     468999999999999999874

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]

Probab=98.89  E-value=4.8e-08  Score=74.57  Aligned_cols=137  Identities=18%  Similarity=0.269  Sum_probs=93.4

Q ss_pred             ccCCcceEEEcCCC-CEEEEcCCCeEEEEcCCCcEEE-eccc-cC----ccccceEEccCCcEEEEEeCCC---------
Q 030700            8 IVNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWED-WHQV-GS----QSLLGLTTTKENNVIIVCDSQQ---------   71 (173)
Q Consensus         8 ~~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~~~~-~~~~-~~----~p~~gl~~~~~g~l~~v~~~~~---------   71 (173)
                      .+.+|-||+++..| .||++|+.-.+++++++|.... ..++ .+    ..+ ++.++++|.+ |+++...         
T Consensus       113 ~CGRPLGl~f~~~ggdL~VaDAYlGL~~V~p~g~~a~~l~~~~~G~~~kf~N-~ldI~~~g~v-yFTDSSsk~~~rd~~~  190 (376)
T KOG1520|consen  113 LCGRPLGIRFDKKGGDLYVADAYLGLLKVGPEGGLAELLADEAEGKPFKFLN-DLDIDPEGVV-YFTDSSSKYDRRDFVF  190 (376)
T ss_pred             ccCCcceEEeccCCCeEEEEecceeeEEECCCCCcceeccccccCeeeeecC-ceeEcCCCeE-EEeccccccchhheEE
Confidence            46789999999965 9999998888999998876543 2222 12    357 9999998888 9998542         


Q ss_pred             ---------eEEEEccC-C-cEEEEeccCCccccCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcC
Q 030700           72 ---------GLLKVSEE-G-VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP  139 (173)
Q Consensus        72 ---------~i~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~  139 (173)
                               ++++.|+. . .+.+.+     .+..||+++++||+.+ .+++..                 ..++.||-.
T Consensus       191 a~l~g~~~GRl~~YD~~tK~~~VLld-----~L~F~NGlaLS~d~sfvl~~Et~-----------------~~ri~rywi  248 (376)
T KOG1520|consen  191 AALEGDPTGRLFRYDPSTKVTKVLLD-----GLYFPNGLALSPDGSFVLVAETT-----------------TARIKRYWI  248 (376)
T ss_pred             eeecCCCccceEEecCcccchhhhhh-----cccccccccCCCCCCEEEEEeec-----------------cceeeeeEe
Confidence                     12333321 1 222222     2468999999999975 455432                 246666665


Q ss_pred             CC---CeeEEeecc-ccCcceEEEccCCCEEEEE
Q 030700          140 ST---NQTSLVLDG-LYFANGVALSEDERFLVVC  169 (173)
Q Consensus       140 ~~---~~~~~~~~~-~~~p~gi~~~~dg~~lyv~  169 (173)
                      .+   |+.++++.+ ...|..|..+++|. .||+
T Consensus       249 ~g~k~gt~EvFa~~LPG~PDNIR~~~~G~-fWVa  281 (376)
T KOG1520|consen  249 KGPKAGTSEVFAEGLPGYPDNIRRDSTGH-FWVA  281 (376)
T ss_pred             cCCccCchhhHhhcCCCCCcceeECCCCC-EEEE
Confidence            43   344777875 68899999999997 5554

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.86  E-value=5.6e-08  Score=80.19  Aligned_cols=143  Identities=13%  Similarity=0.134  Sum_probs=100.0

Q ss_pred             CCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEccCC-cE-
Q 030700           10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-VT-   82 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-~~-   82 (173)
                      .-+-||.||= +..+|++| ....|.+-..+|.  ...+......|. ||++|.-+|-+|+++.-. .|-....+| .+ 
T Consensus      1025 ~IiVGidfDC~e~mvyWtDv~g~SI~rasL~G~Ep~ti~n~~L~SPE-GiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rk 1103 (1289)
T KOG1214|consen 1025 SIIVGIDFDCRERMVYWTDVAGRSISRASLEGAEPETIVNSGLISPE-GIAVDHIRRNMYWTDSVLDKIEVALLDGSERK 1103 (1289)
T ss_pred             ceeeeeecccccceEEEeecCCCccccccccCCCCceeecccCCCcc-ceeeeeccceeeeeccccchhheeecCCceee
Confidence            3467888886 66788999 4455666666663  345667778999 999998877779998653 343333466 33 


Q ss_pred             EEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEc
Q 030700           83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALS  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~  160 (173)
                      .+..    ..+..|.+|++|+ .|+||++|...               .+-+|-+.++++..-+.+. +.+..||||+|+
T Consensus      1104 vLf~----tdLVNPR~iv~D~~rgnLYwtDWnR---------------enPkIets~mDG~NrRilin~DigLPNGLtfd 1164 (1289)
T KOG1214|consen 1104 VLFY----TDLVNPRAIVVDPIRGNLYWTDWNR---------------ENPKIETSSMDGENRRILINTDIGLPNGLTFD 1164 (1289)
T ss_pred             EEEe----ecccCcceEEeecccCceeeccccc---------------cCCcceeeccCCccceEEeecccCCCCCceeC
Confidence            2221    1135799999999 67899998752               2236777777754444443 458999999999


Q ss_pred             cCCCEEEEEecC
Q 030700          161 EDERFLVVCESW  172 (173)
Q Consensus       161 ~dg~~lyv~~~~  172 (173)
                      |-.+.|-|.|.+
T Consensus      1165 pfs~~LCWvDAG 1176 (1289)
T KOG1214|consen 1165 PFSKLLCWVDAG 1176 (1289)
T ss_pred             cccceeeEEecC
Confidence            999988888764

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=98.86  E-value=1.4e-07  Score=80.86  Aligned_cols=156  Identities=18%  Similarity=0.257  Sum_probs=97.2

Q ss_pred             ccCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEecc--------------------ccCccccceEEccCCcEEEEE
Q 030700            8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQ--------------------VGSQSLLGLTTTKENNVIIVC   67 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~--------------------~~~~p~~gl~~~~~g~l~~v~   67 (173)
                      .|..|.|+++|..|.|||+|.. .|.++|.+|.+..+..                    ...+|. .|+++|=.+-|||.
T Consensus       473 ~L~~PkGIa~dk~g~lYfaD~t-~IR~iD~~giIstlig~~~~~~~p~~C~~~~kl~~~~leWPT-~LaV~Pmdnsl~Vl  550 (1899)
T KOG4659|consen  473 QLIFPKGIAFDKMGNLYFADGT-RIRVIDTTGIISTLIGTTPDQHPPRTCAQITKLVDLQLEWPT-SLAVDPMDNSLLVL  550 (1899)
T ss_pred             eeccCCceeEccCCcEEEeccc-EEEEeccCceEEEeccCCCCccCccccccccchhheeeeccc-ceeecCCCCeEEEe
Confidence            5789999999999999999853 5888887775544310                    134699 99999943444888


Q ss_pred             eCCCeEEEEccCC-cEEEEec---c--C-----------CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCC
Q 030700           68 DSQQGLLKVSEEG-VTVLVSQ---F--N-----------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEP  130 (173)
Q Consensus        68 ~~~~~i~~~~~~g-~~~~~~~---~--~-----------~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~  130 (173)
                      + .+-|++++.++ +.++...   +  .           ...+..+.+|++.++|.+||++....     +...+-.-..
T Consensus       551 d-~nvvlrit~~~rV~Ii~GrP~hC~~a~~t~~~skla~H~tl~~~r~Iavg~~G~lyvaEsD~r-----riNrvr~~~t  624 (1899)
T KOG4659|consen  551 D-TNVVLRITVVHRVRIILGRPTHCDLANATSSASKLADHRTLLIQRDIAVGTDGALYVAESDGR-----RINRVRKLST  624 (1899)
T ss_pred             e-cceEEEEccCccEEEEcCCccccccCCCchhhhhhhhhhhhhhhhceeecCCceEEEEeccch-----hhhheEEecc
Confidence            6 44688888877 5543211   0  0           11234678999999999999975421     0000111122


Q ss_pred             CceEEEEcCCCCee--------E------Eee--ccccCcceEEEccCCCEEEEEecC
Q 030700          131 HGVLLKYDPSTNQT--------S------LVL--DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       131 ~~~v~~~d~~~~~~--------~------~~~--~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +|++..+.-....+        .      ..+  ..+..|..+|++|||. +||+|.+
T Consensus       625 dg~i~ilaGa~S~C~C~~~~~cdcfs~~~~~At~A~lnsp~alaVsPdg~-v~IAD~g  681 (1899)
T KOG4659|consen  625 DGTISILAGAKSPCSCDVAACCDCFSLRDVAATQAKLNSPYALAVSPDGD-VIIADSG  681 (1899)
T ss_pred             CceEEEecCCCCCCCcccccCCccccccchhhhccccCCcceEEECCCCc-EEEecCC
Confidence            33444333110000        0      011  1267889999999996 9999875

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.85  E-value=4e-07  Score=67.03  Aligned_cols=62  Identities=15%  Similarity=0.218  Sum_probs=36.2

Q ss_pred             cCCccCCcceEEEcCC-CCEE-EEcCCCeEEEEcCCCcEEEeccc--cCccccceEEccCCcEEEEEe
Q 030700            5 GEGIVNHPEDVSVDGN-GVLY-TATGDGWIKRMHPNGTWEDWHQV--GSQSLLGLTTTKENNVIIVCD   68 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~~-g~l~-~~~~~~~i~~~~~~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~   68 (173)
                      .++....+.||+++|+ ++|| |.+..+.|+.++.+|++.+..+.  .+.+. ||++..++++ ++++
T Consensus        17 l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~G~vlr~i~l~g~~D~E-gI~y~g~~~~-vl~~   82 (248)
T PF06977_consen   17 LPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLDGKVLRRIPLDGFGDYE-GITYLGNGRY-VLSE   82 (248)
T ss_dssp             -TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT--EEEEEE-SS-SSEE-EEEE-STTEE-EEEE
T ss_pred             CCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCCCCEEEEEeCCCCCCce-eEEEECCCEE-EEEE
Confidence            4565667999999995 6788 55677889999888876543222  23466 6666655555 4443

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG1214 consensus Nidogen and related basement membrane protein proteins [Cell wall/membrane/envelope biogenesis; Extracellular structures]

Probab=98.84  E-value=7e-08  Score=79.62  Aligned_cols=146  Identities=11%  Similarity=0.062  Sum_probs=104.2

Q ss_pred             ceecCCccCCcceEEEcCC-CCEEEEc-CCCeEEEEcCCCcEEE--eccccCccccceEEccCCcEEEEEeCCC---eEE
Q 030700            2 IKLGEGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWED--WHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLL   74 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~g~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~   74 (173)
                      |++....|-.|||||+|.- .++|++| ...+|-.-..+|+..+  +....-.|. +|++|+=++-||++++..   .|-
T Consensus      1060 ~ti~n~~L~SPEGiAVDh~~Rn~ywtDS~lD~IevA~LdG~~rkvLf~tdLVNPR-~iv~D~~rgnLYwtDWnRenPkIe 1138 (1289)
T KOG1214|consen 1060 ETIVNSGLISPEGIAVDHIRRNMYWTDSVLDKIEVALLDGSERKVLFYTDLVNPR-AIVVDPIRGNLYWTDWNRENPKIE 1138 (1289)
T ss_pred             ceeecccCCCccceeeeeccceeeeeccccchhheeecCCceeeEEEeecccCcc-eEEeecccCceeeccccccCCcce
Confidence            3445555899999999984 5899988 5566766666776444  344456899 999998544449999763   477


Q ss_pred             EEccCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc
Q 030700           75 KVSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL  151 (173)
Q Consensus        75 ~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  151 (173)
                      ..+.||  .+++.+.-    +..||+|.|+|..+ |-|+|..                 ..++..+.+++...+++..++
T Consensus      1139 ts~mDG~NrRilin~D----igLPNGLtfdpfs~~LCWvDAG-----------------t~rleC~~p~g~gRR~i~~~L 1197 (1289)
T KOG1214|consen 1139 TSSMDGENRRILINTD----IGLPNGLTFDPFSKLLCWVDAG-----------------TKRLECTLPDGTGRRVIQNNL 1197 (1289)
T ss_pred             eeccCCccceEEeecc----cCCCCCceeCcccceeeEEecC-----------------CcceeEecCCCCcchhhhhcc
Confidence            777788  55555432    35899999999764 7777654                 257888888755556677789


Q ss_pred             cCcceEEEccCCCEEEEEec
Q 030700          152 YFANGVALSEDERFLVVCES  171 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ..|.+|+-..  +.+|++|-
T Consensus      1198 qYPF~itsy~--~~fY~TDW 1215 (1289)
T KOG1214|consen 1198 QYPFSITSYA--DHFYHTDW 1215 (1289)
T ss_pred             cCceeeeecc--ccceeecc
Confidence            9998887544  44898873

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=98.83  E-value=1.1e-06  Score=64.64  Aligned_cols=138  Identities=22%  Similarity=0.269  Sum_probs=89.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC---cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~~   84 (173)
                      -+.||++.. +.+||.-. ..+..+.+|++. +...-..-.+... ||+.+.+ .+ |+++..+.+..+|+..   ...+
T Consensus        90 ~FgEGit~~-~d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~~EGW-GLt~dg~-~L-i~SDGS~~L~~~dP~~f~~~~~i  165 (264)
T PF05096_consen   90 YFGEGITIL-GDKLYQLTWKEGTGFVYDPNTLKKIGTFPYPGEGW-GLTSDGK-RL-IMSDGSSRLYFLDPETFKEVRTI  165 (264)
T ss_dssp             --EEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEE-SSS---EEEECSS-CE-EEE-SSSEEEEE-TTT-SEEEEE
T ss_pred             ccceeEEEE-CCEEEEEEecCCeEEEEccccceEEEEEecCCcce-EEEcCCC-EE-EEECCccceEEECCcccceEEEE
Confidence            467888887 55788555 667788898753 2222122345677 8885433 55 9999888999999754   4444


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--c------------
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--G------------  150 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~------------  150 (173)
                      .....+.+....|.|.+- +|.+|.--..                 +..|.++||++|++.....  +            
T Consensus       166 ~V~~~g~pv~~LNELE~i-~G~IyANVW~-----------------td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~  227 (264)
T PF05096_consen  166 QVTDNGRPVSNLNELEYI-NGKIYANVWQ-----------------TDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQ  227 (264)
T ss_dssp             E-EETTEE---EEEEEEE-TTEEEEEETT-----------------SSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST-
T ss_pred             EEEECCEECCCcEeEEEE-cCEEEEEeCC-----------------CCeEEEEeCCCCeEEEEEEhhHhhhccccccccc
Confidence            444567888899999997 7888875432                 2589999999999877642  1            


Q ss_pred             --ccCcceEEEccCCCEEEEE
Q 030700          151 --LYFANGVALSEDERFLVVC  169 (173)
Q Consensus       151 --~~~p~gi~~~~dg~~lyv~  169 (173)
                        ...-||||++|+.+.+|||
T Consensus       228 ~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  228 PDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             -TTS-EEEEEEETTTTEEEEE
T ss_pred             ccCCeeEeEeEeCCCCEEEEE
Confidence              1245899999999999997

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=98.79  E-value=1.8e-07  Score=75.84  Aligned_cols=154  Identities=19%  Similarity=0.227  Sum_probs=81.4

Q ss_pred             cCCccCCcceEEEcC-CCCEEEEcCCCe---EEE--------EcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCe
Q 030700            5 GEGIVNHPEDVSVDG-NGVLYTATGDGW---IKR--------MHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG   72 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~-~g~l~~~~~~~~---i~~--------~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~   72 (173)
                      +...|.+||++.++| +|.+|++..++.   ...        -+..|++.++.+....+. +..+.-+  +++++.....
T Consensus       345 GAT~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~-~~~f~~~--~~~~~g~~~~  421 (524)
T PF05787_consen  345 GATPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHA-ATTFTWE--LFLVGGDPTD  421 (524)
T ss_pred             ccccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccc-cceeEEE--EEEEecCccc
Confidence            345689999999999 689998762222   000        112244444433333333 3333221  2122211000


Q ss_pred             EEEEccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcc-----cce--eeecccCCCceEEEEcCCCCeeE
Q 030700           73 LLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPA-----EYY--LDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        73 i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~-----~~~--~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                       .      ............+.+|+.|+++++|+|||++........     ...  ..+....... ++..++.+++++
T Consensus       422 -~------~~~~~~~~~~~~f~sPDNL~~d~~G~LwI~eD~~~~~~~l~g~t~~G~~~~~~~~~G~~-~~~~~~~~g~~~  493 (524)
T PF05787_consen  422 -A------SGNGSNKCDDNGFASPDNLAFDPDGNLWIQEDGGGSNNNLPGVTPDGEVYDFARNDGNN-VWAYDPDTGELK  493 (524)
T ss_pred             -c------cccccCcccCCCcCCCCceEECCCCCEEEEeCCCCCCcccccccccCceeeeeecccce-eeecccccccee
Confidence             0      000011122334679999999999999997644221110     000  0011111111 556677777777


Q ss_pred             Eeeccc--cCcceEEEccCCCEEEEE
Q 030700          146 LVLDGL--YFANGVALSEDERFLVVC  169 (173)
Q Consensus       146 ~~~~~~--~~p~gi~~~~dg~~lyv~  169 (173)
                      .+....  ....|++|+||+++|||+
T Consensus       494 rf~~~P~gaE~tG~~fspDg~tlFvn  519 (524)
T PF05787_consen  494 RFLVGPNGAEITGPCFSPDGRTLFVN  519 (524)
T ss_pred             eeccCCCCcccccceECCCCCEEEEE
Confidence            776553  445799999999999996

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.77  E-value=1.3e-06  Score=67.32  Aligned_cols=108  Identities=8%  Similarity=-0.034  Sum_probs=73.9

Q ss_pred             CCEEEEcCC-----CeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC---------CC-eEEEEcc-CC--c
Q 030700           21 GVLYTATGD-----GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS---------QQ-GLLKVSE-EG--V   81 (173)
Q Consensus        21 g~l~~~~~~-----~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~---------~~-~i~~~~~-~g--~   81 (173)
                      .++|+.+..     ++|+.+|. +++.....+.+..|+ ++ +++||+.+|+|..         .. .|-.+|. +.  .
T Consensus        13 ~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~   90 (352)
T TIGR02658        13 RRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPI   90 (352)
T ss_pred             CEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEE
Confidence            468988843     88999996 455666667788999 97 9999999999987         32 3555554 33  2


Q ss_pred             EEEEecc--CCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           82 TVLVSQF--NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        82 ~~~~~~~--~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      ..+....  ..+-...+..++++|||+ +||++..                +.+.|..+|..++++..
T Consensus        91 ~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~----------------p~~~V~VvD~~~~kvv~  142 (352)
T TIGR02658        91 ADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFS----------------PSPAVGVVDLEGKAFVR  142 (352)
T ss_pred             eEEccCCCchhhccCccceEEECCCCCEEEEecCC----------------CCCEEEEEECCCCcEEE
Confidence            2222110  111135778999999996 7888532                45789999988776543

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=98.76  E-value=1.2e-07  Score=75.50  Aligned_cols=151  Identities=18%  Similarity=0.228  Sum_probs=82.0

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEcCCCe-EEE-------EcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTATGDGW-IKR-------MHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGL   73 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~~~~~-i~~-------~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i   73 (173)
                      +++...|..||++++.| .|.+|++..++. --.       -+.-|++.+|.+...... +-.+-.+  +++.|. ....
T Consensus       410 ~lGAT~mdRpE~i~~~p~~g~Vy~~lTNn~~r~~~~aNpr~~n~~G~I~r~~p~~~d~t-~~~ftWd--lF~~aG-~~~~  485 (616)
T COG3211         410 KLGATPMDRPEWIAVNPGTGEVYFTLTNNGKRSDDAANPRAKNGYGQIVRWIPATGDHT-DTKFTWD--LFVEAG-NPSV  485 (616)
T ss_pred             HhCCccccCccceeecCCcceEEEEeCCCCccccccCCCcccccccceEEEecCCCCcc-Cccceee--eeeecC-Cccc
Confidence            45677899999999999 689998873322 100       011245566544433222 2222122  312221 1111


Q ss_pred             EEEccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--
Q 030700           74 LKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--  151 (173)
Q Consensus        74 ~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--  151 (173)
                      ......      .....--|.+|++|++|+.|+||+...........+..      .-..+..-++.+++++....+.  
T Consensus       486 ~~~~~~------~~~~~~~f~~PDnl~fD~~GrLWi~TDg~~s~~~~~~~------G~~~m~~~~p~~g~~~rf~t~P~g  553 (616)
T COG3211         486 LEGGAS------ANINANWFNSPDNLAFDPWGRLWIQTDGSGSTLRNRFR------GVTQMLTPDPKTGTIKRFLTGPIG  553 (616)
T ss_pred             cccccc------cCcccccccCCCceEECCCCCEEEEecCCCCccCcccc------cccccccCCCccceeeeeccCCCc
Confidence            111110      01111235789999999999999965432211111100      0013444456667776666553  


Q ss_pred             cCcceEEEccCCCEEEEE
Q 030700          152 YFANGVALSEDERFLVVC  169 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~  169 (173)
                      ..-.|.+|+||+++|||+
T Consensus       554 ~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         554 CEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             ceeecceeCCCCceEEEE
Confidence            345799999999999996

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.73  E-value=3.5e-06  Score=67.17  Aligned_cols=139  Identities=12%  Similarity=0.065  Sum_probs=86.7

Q ss_pred             CcceEEEcCCCC-EEE-Ec--CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-
Q 030700           11 HPEDVSVDGNGV-LYT-AT--GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-   80 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~-~~--~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-   80 (173)
                      ....++|.|+|. |++ +.  .+..|+.++.. |+...+....+... ..+++|||+.++++...   ..|+.++.+ + 
T Consensus       203 ~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~  281 (435)
T PRK05137        203 LVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTF-APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGT  281 (435)
T ss_pred             CeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCccc-CcEECCCCCEEEEEEecCCCceEEEEECCCCc
Confidence            345688999885 444 33  34679999964 45444433344445 78899999865544322   358888854 4 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                      ...+... .    .......++|||+ ++++...               .....||++|.++++.+.+......-...+|
T Consensus       282 ~~~Lt~~-~----~~~~~~~~spDG~~i~f~s~~---------------~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~  341 (435)
T PRK05137        282 TTRLTDS-P----AIDTSPSYSPDGSQIVFESDR---------------SGSPQLYVMNADGSNPRRISFGGGRYSTPVW  341 (435)
T ss_pred             eEEccCC-C----CccCceeEcCCCCEEEEEECC---------------CCCCeEEEEECCCCCeEEeecCCCcccCeEE
Confidence            4444321 1    1234578999996 5555321               1224799999987777766544333345789


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +|||+.|+++.
T Consensus       342 SpdG~~ia~~~  352 (435)
T PRK05137        342 SPRGDLIAFTK  352 (435)
T ss_pred             CCCCCEEEEEE
Confidence            99999887754

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=98.73  E-value=6.6e-08  Score=59.35  Aligned_cols=72  Identities=31%  Similarity=0.551  Sum_probs=49.5

Q ss_pred             cEEEcCCCcEEEEeCcCCcCcccce--eeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecCC
Q 030700           98 DVIEASDGSLYFTVSSTKFTPAEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESWK  173 (173)
Q Consensus        98 ~l~~~~dG~~~v~~~~~~~~~~~~~--~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~~  173 (173)
                      +|+.-....+|+|+.+.  -...++  .+.....+-+.|..+|+  ++.+.++.++..||||+++|++++|||+++.+
T Consensus         2 DIvavG~~sFy~TNDhy--f~~~~l~~lE~~l~~~~~~Vvyyd~--~~~~~va~g~~~aNGI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen    2 DIVAVGPDSFYVTNDHY--FTDPFLRLLETYLGLPWGNVVYYDG--KEVKVVASGFSFANGIAISPDKKYLYVASSLA   75 (86)
T ss_pred             CEEEECcCcEEEECchh--hCcHHHHHHHHHhcCCCceEEEEeC--CEeEEeeccCCCCceEEEcCCCCEEEEEeccC
Confidence            34333334789987542  112221  12222345578888998  46888999999999999999999999999764

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.72  E-value=4.9e-06  Score=64.25  Aligned_cols=103  Identities=8%  Similarity=0.062  Sum_probs=63.3

Q ss_pred             CCcEEEEEeCCCeEEEEccCC--cE---EEEeccCC--ccccCCcc---EEEcCCC-cEEEEeCcCCcCcccceeeeccc
Q 030700           60 ENNVIIVCDSQQGLLKVSEEG--VT---VLVSQFNG--SQLRFAND---VIEASDG-SLYFTVSSTKFTPAEYYLDLVSG  128 (173)
Q Consensus        60 ~g~l~~v~~~~~~i~~~~~~g--~~---~~~~~~~~--~~~~~~~~---l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~  128 (173)
                      +|+.+|++.. ..+..++..+  ..   .+.....+  +..-.|-+   ++++++| ++||.......+-        ..
T Consensus       205 dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~t--------hk  275 (352)
T TIGR02658       205 SGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWT--------HK  275 (352)
T ss_pred             CCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCcccc--------cc
Confidence            6777677655 4577777322  11   11111011  00113444   9999987 5888532111000        12


Q ss_pred             CCCceEEEEcCCCCeeEEeeccccCcceEEEccCCC-EEEEEec
Q 030700          129 EPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER-FLVVCES  171 (173)
Q Consensus       129 ~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~-~lyv~~~  171 (173)
                      .+.+.|+.+|+.++++.........|.+|+++||++ .||+++.
T Consensus       276 ~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~  319 (352)
T TIGR02658       276 TASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALST  319 (352)
T ss_pred             CCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCC
Confidence            345699999999988766666667899999999999 9999873

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.70  E-value=2.8e-06  Score=68.00  Aligned_cols=137  Identities=12%  Similarity=0.035  Sum_probs=84.5

Q ss_pred             ceEEEcCCCC-EEEE-cC--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-cE
Q 030700           13 EDVSVDGNGV-LYTA-TG--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~-~~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-~~   82 (173)
                      ..+.|+|+|. |+++ ..  ...|+.++.+ |+...+....+... ..++++||+.++++...   ..|+.++.+ + .+
T Consensus       221 ~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~  299 (448)
T PRK04792        221 MSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGING-APRFSPDGKKLALVLSKDGQPEIYVVDIATKALT  299 (448)
T ss_pred             cCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcC-CeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE
Confidence            4689999884 5544 32  3468999864 44444433333345 67899999865554322   248888854 4 44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+....     ......+++|||+ ++++...               .....||++|.++++.+.+........+.+|+|
T Consensus       300 ~lt~~~-----~~~~~p~wSpDG~~I~f~s~~---------------~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~Sp  359 (448)
T PRK04792        300 RITRHR-----AIDTEPSWHPDGKSLIFTSER---------------GGKPQIYRVNLASGKVSRLTFEGEQNLGGSITP  359 (448)
T ss_pred             ECccCC-----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEEecCCCCCcCeeECC
Confidence            433211     1345678999996 5555321               122479999998887766543323334578999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||++||++.
T Consensus       360 DG~~l~~~~  368 (448)
T PRK04792        360 DGRSMIMVN  368 (448)
T ss_pred             CCCEEEEEE
Confidence            999998864

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=98.69  E-value=1.9e-07  Score=57.70  Aligned_cols=67  Identities=18%  Similarity=0.304  Sum_probs=48.9

Q ss_pred             ceEEEcCC-CCEEEEcC------------------CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCC-C
Q 030700           13 EDVSVDGN-GVLYTATG------------------DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-Q   71 (173)
Q Consensus        13 ~~l~~~~~-g~l~~~~~------------------~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~   71 (173)
                      .+|+++++ |.+||++.                  .|+++++|+.. +...+.+....|+ |+++++|+..++||+.. .
T Consensus         1 ndldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t~~~~vl~~~L~fpN-GVals~d~~~vlv~Et~~~   79 (89)
T PF03088_consen    1 NDLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPSTKETTVLLDGLYFPN-GVALSPDESFVLVAETGRY   79 (89)
T ss_dssp             -EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTTTEEEEEEEEESSEE-EEEE-TTSSEEEEEEGGGT
T ss_pred             CceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCCCeEEEehhCCCccC-eEEEcCCCCEEEEEeccCc
Confidence            36889997 99999983                  38899999865 4556667778999 99999999988999876 5


Q ss_pred             eEEEEccCC
Q 030700           72 GLLKVSEEG   80 (173)
Q Consensus        72 ~i~~~~~~g   80 (173)
                      +|.+++-+|
T Consensus        80 Ri~rywl~G   88 (89)
T PF03088_consen   80 RILRYWLKG   88 (89)
T ss_dssp             EEEEEESSS
T ss_pred             eEEEEEEeC
Confidence            687776443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.68  E-value=3.3e-07  Score=65.89  Aligned_cols=149  Identities=19%  Similarity=0.174  Sum_probs=88.0

Q ss_pred             ceEEEcC-CCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCC--cEEEEEeCCCeEEEEccCC----c--
Q 030700           13 EDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKEN--NVIIVCDSQQGLLKVSEEG----V--   81 (173)
Q Consensus        13 ~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g--~l~~v~~~~~~i~~~~~~g----~--   81 (173)
                      ||+.|+. .+.||+.| ..+.|+|+|. +....+..-+..... |..+--.|  .. |+..-+.....++-+|    .  
T Consensus        18 Egp~w~~~~~sLl~VDi~ag~v~r~D~~qn~v~ra~ie~p~~a-g~ilpv~~~~q~-~~v~~G~kf~i~nwd~~~~~a~v   95 (310)
T KOG4499|consen   18 EGPHWDVERQSLLYVDIEAGEVHRYDIEQNKVYRAKIEGPPSA-GFILPVEGGPQE-FAVGCGSKFVIVNWDGVSESAKV   95 (310)
T ss_pred             CCCceEEecceEEEEEeccCceehhhhhhhheEEEEEecCcce-eEEEEecCCCce-EEEeecceEEEEEcccccceeee
Confidence            6777776 56666555 7889999984 343333211221122 44442111  22 3322233222233333    1  


Q ss_pred             -EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           82 -TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        82 -~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                       +++...-.....++.|+-.+||+|+.|....+. ++      ..++ .-.+.++++-+. +++..+...+..+|||+|+
T Consensus        96 ~~t~~ev~~d~kknR~NDgkvdP~Gryy~GtMad-~~------~~le-~~~g~Ly~~~~~-h~v~~i~~~v~IsNgl~Wd  166 (310)
T KOG4499|consen   96 YRTLFEVQPDRKKNRLNDGKVDPDGRYYGGTMAD-FG------DDLE-PIGGELYSWLAG-HQVELIWNCVGISNGLAWD  166 (310)
T ss_pred             eeeccccCchHHhcccccCccCCCCceeeeeecc-cc------cccc-ccccEEEEeccC-CCceeeehhccCCcccccc
Confidence             121122233345788999999999999876441 11      1111 123567766664 8899999999999999999


Q ss_pred             cCCCEEEEEecC
Q 030700          161 EDERFLVVCESW  172 (173)
Q Consensus       161 ~dg~~lyv~~~~  172 (173)
                      .|.+.+|++|+.
T Consensus       167 ~d~K~fY~iDsl  178 (310)
T KOG4499|consen  167 SDAKKFYYIDSL  178 (310)
T ss_pred             ccCcEEEEEccC
Confidence            999999999874

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.62  E-value=8.2e-06  Score=65.02  Aligned_cols=138  Identities=11%  Similarity=0.049  Sum_probs=85.7

Q ss_pred             cceEEEcCCCC-EEE-Ec--CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-c
Q 030700           12 PEDVSVDGNGV-LYT-AT--GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-V   81 (173)
Q Consensus        12 p~~l~~~~~g~-l~~-~~--~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~   81 (173)
                      ...++|+|+|. |.+ +.  ....|+.++.+ |+...+....+... .++++|||+.|+++...   ..|+.++. .+ .
T Consensus       201 ~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~-~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~  279 (429)
T PRK03629        201 LMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI  279 (429)
T ss_pred             eeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcC-CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCE
Confidence            45789999884 443 33  33468888754 55444433334445 78899999875655322   25777775 44 4


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      +.+....     .......++|||+ |+++...               ...-.||++++++++.+.+..........+|+
T Consensus       280 ~~lt~~~-----~~~~~~~wSPDG~~I~f~s~~---------------~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~S  339 (429)
T PRK03629        280 RQVTDGR-----SNNTEPTWFPDSQNLAYTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDADVS  339 (429)
T ss_pred             EEccCCC-----CCcCceEECCCCCEEEEEeCC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEEC
Confidence            4443221     2346789999997 5454321               01237999999887776665433344568899


Q ss_pred             cCCCEEEEEe
Q 030700          161 EDERFLVVCE  170 (173)
Q Consensus       161 ~dg~~lyv~~  170 (173)
                      |||+.++++.
T Consensus       340 pDG~~Ia~~~  349 (429)
T PRK03629        340 SDGKFMVMVS  349 (429)
T ss_pred             CCCCEEEEEE
Confidence            9999887653

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.61  E-value=6.6e-06  Score=66.06  Aligned_cols=140  Identities=16%  Similarity=0.246  Sum_probs=96.4

Q ss_pred             CccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CC-cE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC
Q 030700            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NG-TW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG   80 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g-~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g   80 (173)
                      +......+++|.|+|...++. .+..|..|+. +. .. ..+........ +++|+++|++ +++...++.++++.  .|
T Consensus       201 ~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~-~~~f~p~g~~-i~Sgs~D~tvriWd~~~~  278 (456)
T KOG0266|consen  201 GHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVT-SVAFSPDGNL-LVSGSDDGTVRIWDVRTG  278 (456)
T ss_pred             ccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceE-EEEecCCCCE-EEEecCCCcEEEEeccCC
Confidence            344567789999999866666 7777888885 44 43 34445556677 9999999988 66666666666553  45


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeeccccCc--
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFA--  154 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~p--  154 (173)
                        .+.+...-     .....+++.++|+++++.                 ..++.+..||..++..  .........+  
T Consensus       279 ~~~~~l~~hs-----~~is~~~f~~d~~~l~s~-----------------s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~  336 (456)
T KOG0266|consen  279 ECVRKLKGHS-----DGISGLAFSPDGNLLVSA-----------------SYDGTIRVWDLETGSKLCLKLLSGAENSAP  336 (456)
T ss_pred             eEEEeeeccC-----CceEEEEECCCCCEEEEc-----------------CCCccEEEEECCCCceeeeecccCCCCCCc
Confidence              44443221     256789999999987773                 2357899999998873  2333333344  


Q ss_pred             -ceEEEccCCCEEEEEe
Q 030700          155 -NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 -~gi~~~~dg~~lyv~~  170 (173)
                       .-++|+|+++++++.-
T Consensus       337 ~~~~~fsp~~~~ll~~~  353 (456)
T KOG0266|consen  337 VTSVQFSPNGKYLLSAS  353 (456)
T ss_pred             eeEEEECCCCcEEEEec
Confidence             7899999999888764

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.61  E-value=8.1e-06  Score=64.98  Aligned_cols=136  Identities=13%  Similarity=0.139  Sum_probs=82.0

Q ss_pred             ceEEEcCCCC-EEEEc-C--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCC--cE
Q 030700           13 EDVSVDGNGV-LYTAT-G--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG--VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~-~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g--~~   82 (173)
                      ..++|+|+|+ |+++. .  ...|+.++.+ |+...+....+... ..+++|||+.++++...   ..++.++.++  .+
T Consensus       199 ~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~  277 (427)
T PRK02889        199 ISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNS-APAWSPDGRTLAVALSRDGNSQIYTVNADGSGLR  277 (427)
T ss_pred             ccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEEccCCCceEEEEECCCCCcE
Confidence            4678999884 55444 2  3469999864 55544433334445 78899999765554322   3577777644  44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+... .    .......++|||+ ++++...               ...-.||.++.++++.+.+..........+|||
T Consensus       278 ~lt~~-~----~~~~~~~wSpDG~~l~f~s~~---------------~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~Sp  337 (427)
T PRK02889        278 RLTQS-S----GIDTEPFFSPDGRSIYFTSDR---------------GGAPQIYRMPASGGAAQRVTFTGSYNTSPRISP  337 (427)
T ss_pred             ECCCC-C----CCCcCeEEcCCCCEEEEEecC---------------CCCcEEEEEECCCCceEEEecCCCCcCceEECC
Confidence            43221 1    1234578999997 5555321               012378888887676655543222233578999


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      ||++|+.+
T Consensus       338 DG~~Ia~~  345 (427)
T PRK02889        338 DGKLLAYI  345 (427)
T ss_pred             CCCEEEEE
Confidence            99988764

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.58  E-value=7.3e-06  Score=65.33  Aligned_cols=138  Identities=12%  Similarity=0.083  Sum_probs=84.1

Q ss_pred             cceEEEcCCCC-EEEEc---CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEe-CC--CeEEEEcc-CC-c
Q 030700           12 PEDVSVDGNGV-LYTAT---GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVSE-EG-V   81 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~~---~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~--~~i~~~~~-~g-~   81 (173)
                      -.+++|+|+|. |+++.   ....|+.++.+ |+...+....+... .++|++||+.++++. ..  ..|+.++. .+ .
T Consensus       206 v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~-~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~  284 (433)
T PRK04922        206 ILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRGING-APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL  284 (433)
T ss_pred             cccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCCCcc-CceECCCCCEEEEEEeCCCCceEEEEECCCCCe
Confidence            34678889884 55544   23468899864 45444433333445 778999998645443 22  25888885 44 4


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      ..+... .    ......+++|||+ ++++...               .....||.++.++++.+.+..........+|+
T Consensus       285 ~~lt~~-~----~~~~~~~~spDG~~l~f~sd~---------------~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~S  344 (433)
T PRK04922        285 TRLTNH-F----GIDTEPTWAPDGKSIYFTSDR---------------GGRPQIYRVAASGGSAERLTFQGNYNARASVS  344 (433)
T ss_pred             EECccC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCeEEeecCCCCccCEEEC
Confidence            443221 1    1234678999997 5555321               01236999998877766554333334468999


Q ss_pred             cCCCEEEEEe
Q 030700          161 EDERFLVVCE  170 (173)
Q Consensus       161 ~dg~~lyv~~  170 (173)
                      |||+.++++.
T Consensus       345 pDG~~Ia~~~  354 (433)
T PRK04922        345 PDGKKIAMVH  354 (433)
T ss_pred             CCCCEEEEEE
Confidence            9999988763

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.57  E-value=1.4e-05  Score=63.63  Aligned_cols=137  Identities=13%  Similarity=0.094  Sum_probs=84.6

Q ss_pred             ceEEEcCCCC-EEE-EcC--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-cE
Q 030700           13 EDVSVDGNGV-LYT-ATG--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~-~~~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-~~   82 (173)
                      ..+.|+|+|. |++ +..  ...|+.++.+ |+...+....+... ..+|++||+.++++...   ..++.++.+ + .+
T Consensus       202 ~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~-~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~  280 (430)
T PRK00178        202 LSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNG-APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS  280 (430)
T ss_pred             eeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcC-CeEECCCCCEEEEEEccCCCceEEEEECCCCCeE
Confidence            5678999884 544 433  3468998864 55555443334445 68899999865544322   258888854 4 44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+... .    .......++|||+ ++++...               .....||+++.++++.+.+..........+|+|
T Consensus       281 ~lt~~-~----~~~~~~~~spDg~~i~f~s~~---------------~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Sp  340 (430)
T PRK00178        281 RVTNH-P----AIDTEPFWGKDGRTLYFTSDR---------------GGKPQIYKVNVNGGRAERVTFVGNYNARPRLSA  340 (430)
T ss_pred             EcccC-C----CCcCCeEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccceEECC
Confidence            44321 1    1234568899996 6665321               122479999988787766653333333578999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||+.|+++.
T Consensus       341 dg~~i~~~~  349 (430)
T PRK00178        341 DGKTLVMVH  349 (430)
T ss_pred             CCCEEEEEE
Confidence            999988764

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=98.54  E-value=5.8e-06  Score=67.91  Aligned_cols=138  Identities=17%  Similarity=0.192  Sum_probs=100.8

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-C-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-C-C--c
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-E-G--V   81 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~-g--~   81 (173)
                      .....+++..|||.+.++. .+++|..|+.. | -...+.++..... ++.|...|+. +++..-+|.++.++ . .  .
T Consensus       350 ~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt-~v~f~~~g~~-llssSLDGtVRAwDlkRYrNf  427 (893)
T KOG0291|consen  350 SDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVT-AVQFTARGNV-LLSSSLDGTVRAWDLKRYRNF  427 (893)
T ss_pred             ccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceE-EEEEEecCCE-EEEeecCCeEEeeeeccccee
Confidence            5667889999999888777 88999999854 4 4567777777778 9999999999 66665566666553 3 2  5


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALS  160 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~  160 (173)
                      +++....+    .....++.||.|.+.++-....                =.|+.++.+||+..-+..+...| .+++|+
T Consensus       428 RTft~P~p----~QfscvavD~sGelV~AG~~d~----------------F~IfvWS~qTGqllDiLsGHEgPVs~l~f~  487 (893)
T KOG0291|consen  428 RTFTSPEP----IQFSCVAVDPSGELVCAGAQDS----------------FEIFVWSVQTGQLLDILSGHEGPVSGLSFS  487 (893)
T ss_pred             eeecCCCc----eeeeEEEEcCCCCEEEeeccce----------------EEEEEEEeecCeeeehhcCCCCcceeeEEc
Confidence            55543221    3567899999998766532211                27889999999887777776555 689999


Q ss_pred             cCCCEEEE
Q 030700          161 EDERFLVV  168 (173)
Q Consensus       161 ~dg~~lyv  168 (173)
                      |++..|+-
T Consensus       488 ~~~~~LaS  495 (893)
T KOG0291|consen  488 PDGSLLAS  495 (893)
T ss_pred             cccCeEEe
Confidence            99986653

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=2.4e-05  Score=58.21  Aligned_cols=146  Identities=10%  Similarity=0.106  Sum_probs=90.6

Q ss_pred             ecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc----
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS----   77 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~----   77 (173)
                      +..|--+....|...|.+..|++. .+..|.-||.- -+.+-.....+.|  -.|+||+|-++.++.....|...|    
T Consensus        95 YF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~Rs~  172 (311)
T KOG1446|consen   95 YFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLRSF  172 (311)
T ss_pred             EcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEeccc
Confidence            344544566788888977888766 66677777742 2222222333344  588999998833333333444444    


Q ss_pred             cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC--
Q 030700           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF--  153 (173)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~--  153 (173)
                      ..| ++.+.-..  ......++|.+++||+ |.++...                  +.++.+|+=+|.+..-....++  
T Consensus       173 dkgPF~tf~i~~--~~~~ew~~l~FS~dGK~iLlsT~~------------------s~~~~lDAf~G~~~~tfs~~~~~~  232 (311)
T KOG1446|consen  173 DKGPFTTFSITD--NDEAEWTDLEFSPDGKSILLSTNA------------------SFIYLLDAFDGTVKSTFSGYPNAG  232 (311)
T ss_pred             CCCCceeEccCC--CCccceeeeEEcCCCCEEEEEeCC------------------CcEEEEEccCCcEeeeEeeccCCC
Confidence            245 66654321  1224569999999997 6776533                  5778888776765444443333  


Q ss_pred             --cceEEEccCCCEEEEEec
Q 030700          154 --ANGVALSEDERFLVVCES  171 (173)
Q Consensus       154 --p~gi~~~~dg~~lyv~~~  171 (173)
                        |-+.+|+||++++..+..
T Consensus       233 ~~~~~a~ftPds~Fvl~gs~  252 (311)
T KOG1446|consen  233 NLPLSATFTPDSKFVLSGSD  252 (311)
T ss_pred             CcceeEEECCCCcEEEEecC
Confidence              347899999998887654

>PRK03629 tolB translocation protein TolB; Provisional

Probab=98.52  E-value=2.4e-05  Score=62.32  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=84.5

Q ss_pred             ceEEEcCCCC-EEEEc-CC--CeEEEEcCC-CcEEEeccccCccccceEEccCCcEEE-EEeCC--CeEEEEccCC--cE
Q 030700           13 EDVSVDGNGV-LYTAT-GD--GWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVII-VCDSQ--QGLLKVSEEG--VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~-~~--~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~-v~~~~--~~i~~~~~~g--~~   82 (173)
                      ..++|+|+|. |+++. ..  ..|+.++.+ ++...+........ ...+++||+.++ +++..  ..++.++.++  .+
T Consensus       246 ~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~-~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~  324 (429)
T PRK03629        246 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQ  324 (429)
T ss_pred             CCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcC-ceEECCCCCEEEEEeCCCCCceEEEEECCCCCeE
Confidence            4579999984 66553 33  369999864 45555544334456 788999998644 44332  2588888644  44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+..  .+   .......++|||+ ++++...               .....|+.+|.++++.+.+.... .-....|+|
T Consensus       325 ~lt~--~~---~~~~~~~~SpDG~~Ia~~~~~---------------~g~~~I~~~dl~~g~~~~Lt~~~-~~~~p~~Sp  383 (429)
T PRK03629        325 RITW--EG---SQNQDADVSSDGKFMVMVSSN---------------GGQQHIAKQDLATGGVQVLTDTF-LDETPSIAP  383 (429)
T ss_pred             Eeec--CC---CCccCEEECCCCCEEEEEEcc---------------CCCceEEEEECCCCCeEEeCCCC-CCCCceECC
Confidence            4422  11   2345688999997 4444321               11246888999888776665432 223578999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||+.|+.+.
T Consensus       384 DG~~i~~~s  392 (429)
T PRK03629        384 NGTMVIYSS  392 (429)
T ss_pred             CCCEEEEEE
Confidence            999887754

>PRK05137 tolB translocation protein TolB; Provisional

Probab=98.49  E-value=1.9e-05  Score=63.03  Aligned_cols=136  Identities=10%  Similarity=0.107  Sum_probs=83.9

Q ss_pred             ceEEEcCCCC-EEEEc-C--CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEe-CC--CeEEEEccCC--cE
Q 030700           13 EDVSVDGNGV-LYTAT-G--DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVSEEG--VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~-~--~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~--~~i~~~~~~g--~~   82 (173)
                      ..++|+|+|. |+++. .  ...||.++.++ ....+....+... ...+++||+.++++. ..  ..++.++.++  .+
T Consensus       249 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~-~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~  327 (435)
T PRK05137        249 FAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDT-SPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPR  327 (435)
T ss_pred             cCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccCCCCccC-ceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeE
Confidence            4678999885 55443 2  34699998654 4555443334445 688999998645443 22  2588888654  44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+... .    .......++|||+ ++++...               .....|+.+|++++..+.+..+. ......|+|
T Consensus       328 ~lt~~-~----~~~~~~~~SpdG~~ia~~~~~---------------~~~~~i~~~d~~~~~~~~lt~~~-~~~~p~~sp  386 (435)
T PRK05137        328 RISFG-G----GRYSTPVWSPRGDLIAFTKQG---------------GGQFSIGVMKPDGSGERILTSGF-LVEGPTWAP  386 (435)
T ss_pred             EeecC-C----CcccCeEECCCCCEEEEEEcC---------------CCceEEEEEECCCCceEeccCCC-CCCCCeECC
Confidence            44321 1    2335578999996 5554321               11247888998766655544432 456789999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||+.|+++-
T Consensus       387 DG~~i~~~~  395 (435)
T PRK05137        387 NGRVIMFFR  395 (435)
T ss_pred             CCCEEEEEE
Confidence            999887753

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.47  E-value=7.2e-06  Score=60.44  Aligned_cols=100  Identities=18%  Similarity=0.241  Sum_probs=54.7

Q ss_pred             CCcceEEEcCC-CCEEEEc-CC-CeEEEEcC--CC-cEEEe-----c---cccCccccceEEccC-CcEEEEE-eCCCeE
Q 030700           10 NHPEDVSVDGN-GVLYTAT-GD-GWIKRMHP--NG-TWEDW-----H---QVGSQSLLGLTTTKE-NNVIIVC-DSQQGL   73 (173)
Q Consensus        10 ~~p~~l~~~~~-g~l~~~~-~~-~~i~~~~~--~g-~~~~~-----~---~~~~~p~~gl~~~~~-g~l~~v~-~~~~~i   73 (173)
                      .+-|||++|+. ++||++- .+ ..|+.++.  .+ .....     .   .....+. ++++++. |++ |+. +....+
T Consensus       118 ~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S-~l~~~p~t~~l-liLS~es~~l  195 (248)
T PF06977_consen  118 KGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS-GLSYDPRTGHL-LILSDESRLL  195 (248)
T ss_dssp             S--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS----EEEEETTTTEE-EEEETTTTEE
T ss_pred             cceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc-ceEEcCCCCeE-EEEECCCCeE
Confidence            56899999994 6788765 32 35787764  22 22111     1   1234588 9999986 455 654 444678


Q ss_pred             EEEccCC-cEEEEeccCC-----ccccCCccEEEcCCCcEEEEe
Q 030700           74 LKVSEEG-VTVLVSQFNG-----SQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        74 ~~~~~~g-~~~~~~~~~~-----~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      +.++.+| .........+     +.+..|.+|++|++|+||+++
T Consensus       196 ~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs  239 (248)
T PF06977_consen  196 LELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS  239 (248)
T ss_dssp             EEE-TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE
T ss_pred             EEECCCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc
Confidence            8889888 4444433222     345689999999999999985

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK04922 tolB translocation protein TolB; Provisional

Probab=98.47  E-value=3e-05  Score=61.85  Aligned_cols=136  Identities=13%  Similarity=0.115  Sum_probs=83.7

Q ss_pred             ceEEEcCCCC-EEEE-cC--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEe-CC--CeEEEEcc-CC-cE
Q 030700           13 EDVSVDGNGV-LYTA-TG--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQ--QGLLKVSE-EG-VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~-~~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~--~~i~~~~~-~g-~~   82 (173)
                      ..++|+|+|. |+++ +.  +..|+.++.+ |+...+........ .++|++||+.++++. ..  ..++.++. .+ .+
T Consensus       251 ~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~-~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~  329 (433)
T PRK04922        251 GAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDT-EPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAE  329 (433)
T ss_pred             cCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCeE
Confidence            3678999884 6554 33  3469999864 45555433333445 678999998655543 22  24787775 34 44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+..  .+   ......+++|||+ ++++...               .....|+.+|.++++.+.+..+. ......|+|
T Consensus       330 ~lt~--~g---~~~~~~~~SpDG~~Ia~~~~~---------------~~~~~I~v~d~~~g~~~~Lt~~~-~~~~p~~sp  388 (433)
T PRK04922        330 RLTF--QG---NYNARASVSPDGKKIAMVHGS---------------GGQYRIAVMDLSTGSVRTLTPGS-LDESPSFAP  388 (433)
T ss_pred             Eeec--CC---CCccCEEECCCCCEEEEEECC---------------CCceeEEEEECCCCCeEECCCCC-CCCCceECC
Confidence            4321  11   2334689999996 5555321               01237899998878776555432 334578999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||++++++.
T Consensus       389 dG~~i~~~s  397 (433)
T PRK04922        389 NGSMVLYAT  397 (433)
T ss_pred             CCCEEEEEE
Confidence            999877654

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=4.8e-05  Score=56.64  Aligned_cols=135  Identities=11%  Similarity=0.181  Sum_probs=86.3

Q ss_pred             cCCcceEEEcCCCCEEEEcC-CCeEEEEcC----CCcEEEec-c-c-cCccccceEEccCCcEEEEEeCCCeEEEEcc-C
Q 030700            9 VNHPEDVSVDGNGVLYTATG-DGWIKRMHP----NGTWEDWH-Q-V-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-E   79 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~----~g~~~~~~-~-~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~   79 (173)
                      +.++--.|+||+|-+++... ...|.-+|.    .|-.+.+. . . ...-. .|.|++||+.+.++...+.++.+|. +
T Consensus       140 ~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~-~l~FS~dGK~iLlsT~~s~~~~lDAf~  218 (311)
T KOG1446|consen  140 LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWT-DLEFSPDGKSILLSTNASFIYLLDAFD  218 (311)
T ss_pred             cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCcccee-eeEEcCCCCEEEEEeCCCcEEEEEccC
Confidence            45566789999999997763 335655652    23233321 1 1 22345 8999999999888887777888896 8


Q ss_pred             C--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc-cCc-c
Q 030700           80 G--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-YFA-N  155 (173)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-~~p-~  155 (173)
                      |  ...+.. .. ...+.|-+-.+.|||.++++.                 ..+|+|..|+.+++.......+. ..| .
T Consensus       219 G~~~~tfs~-~~-~~~~~~~~a~ftPds~Fvl~g-----------------s~dg~i~vw~~~tg~~v~~~~~~~~~~~~  279 (311)
T KOG1446|consen  219 GTVKSTFSG-YP-NAGNLPLSATFTPDSKFVLSG-----------------SDDGTIHVWNLETGKKVAVLRGPNGGPVS  279 (311)
T ss_pred             CcEeeeEee-cc-CCCCcceeEEECCCCcEEEEe-----------------cCCCcEEEEEcCCCcEeeEecCCCCCCcc
Confidence            8  344332 22 122456678899999977763                 24589999999888655555442 222 2


Q ss_pred             eEEEccCC
Q 030700          156 GVALSEDE  163 (173)
Q Consensus       156 gi~~~~dg  163 (173)
                      -+.|+|..
T Consensus       280 ~~~fnP~~  287 (311)
T KOG1446|consen  280 CVRFNPRY  287 (311)
T ss_pred             ccccCCce
Confidence            34455543

>PRK04792 tolB translocation protein TolB; Provisional

Probab=98.41  E-value=4.6e-05  Score=61.08  Aligned_cols=136  Identities=11%  Similarity=0.114  Sum_probs=83.3

Q ss_pred             ceEEEcCCCC-EEEE-cCCC--eEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-cE
Q 030700           13 EDVSVDGNGV-LYTA-TGDG--WIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~-~~~~--~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~~   82 (173)
                      ..++|+|+|. |+++ +.++  .|+.++.+ ++...+........ ..+|++||+.++++...   ..++.++. +| .+
T Consensus       265 ~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~~~~~~-~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~  343 (448)
T PRK04792        265 GAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRHRAIDT-EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVS  343 (448)
T ss_pred             CCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccCCCCcc-ceEECCCCCEEEEEECCCCCceEEEEECCCCCEE
Confidence            3678999885 6654 3333  59999864 45555444334455 78899999875554322   35888885 45 44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+..  .+   ......+++|||+ ++++...               .....|+++|+++++.+.+... .......|+|
T Consensus       344 ~Lt~--~g---~~~~~~~~SpDG~~l~~~~~~---------------~g~~~I~~~dl~~g~~~~lt~~-~~d~~ps~sp  402 (448)
T PRK04792        344 RLTF--EG---EQNLGGSITPDGRSMIMVNRT---------------NGKFNIARQDLETGAMQVLTST-RLDESPSVAP  402 (448)
T ss_pred             EEec--CC---CCCcCeeECCCCCEEEEEEec---------------CCceEEEEEECCCCCeEEccCC-CCCCCceECC
Confidence            4421  11   1223468899996 5555321               1224789999988877665443 1222347999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||+.|+++.
T Consensus       403 dG~~I~~~~  411 (448)
T PRK04792        403 NGTMVIYST  411 (448)
T ss_pred             CCCEEEEEE
Confidence            999887754

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.41  E-value=4.4e-05  Score=60.28  Aligned_cols=138  Identities=12%  Similarity=0.057  Sum_probs=84.8

Q ss_pred             ceEEEcCCCC-EEEEc-C--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-cE
Q 030700           13 EDVSVDGNGV-LYTAT-G--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~-~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-~~   82 (173)
                      ..++|+|+|+ |+++. .  ...|+.++.. |+...+....+... .+++++||+.++++...   ..++.++.. + .+
T Consensus       193 ~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~  271 (417)
T TIGR02800       193 LSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNG-APAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT  271 (417)
T ss_pred             ecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCcc-ceEECCCCCEEEEEECCCCCccEEEEECCCCCEE
Confidence            3467888884 54444 2  2468888854 54554443344556 78899999865655332   247777754 4 44


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+... .    .......++|||+ ++++...               .....||.++.++++...+..........+|+|
T Consensus       272 ~l~~~-~----~~~~~~~~s~dg~~l~~~s~~---------------~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~sp  331 (417)
T TIGR02800       272 RLTNG-P----GIDTEPSWSPDGKSIAFTSDR---------------GGSPQIYMMDADGGEVRRLTFRGGYNASPSWSP  331 (417)
T ss_pred             ECCCC-C----CCCCCEEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCCccCeEECC
Confidence            33221 1    1123467889996 5554321               112379999988777666655555556789999


Q ss_pred             CCCEEEEEec
Q 030700          162 DERFLVVCES  171 (173)
Q Consensus       162 dg~~lyv~~~  171 (173)
                      ||+.++++..
T Consensus       332 dg~~i~~~~~  341 (417)
T TIGR02800       332 DGDLIAFVHR  341 (417)
T ss_pred             CCCEEEEEEc
Confidence            9998887653

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.41  E-value=5.7e-05  Score=60.02  Aligned_cols=135  Identities=10%  Similarity=0.070  Sum_probs=83.2

Q ss_pred             ceEEEcCCCC--EEEEc-C--CCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC-C--CeEEEEccC-C-c
Q 030700           13 EDVSVDGNGV--LYTAT-G--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVSEE-G-V   81 (173)
Q Consensus        13 ~~l~~~~~g~--l~~~~-~--~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~--~~i~~~~~~-g-~   81 (173)
                      ....|.|+|+  +|++. .  ...||.++. +|+...+....+... ...++|||+.++++.. .  ..++.++.+ + .
T Consensus       191 ~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~-~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~  269 (419)
T PRK04043        191 IFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLV-VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL  269 (419)
T ss_pred             EeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEE-eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE
Confidence            3678899884  66555 2  456999986 455555544334334 5679999965454432 2  358888854 4 4


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      +.+... .+    .-....++|||+ ++++....               ....||++|.++++.+.+..... .+ ..||
T Consensus       270 ~~LT~~-~~----~d~~p~~SPDG~~I~F~Sdr~---------------g~~~Iy~~dl~~g~~~rlt~~g~-~~-~~~S  327 (419)
T PRK04043        270 TQITNY-PG----IDVNGNFVEDDKRIVFVSDRL---------------GYPNIFMKKLNSGSVEQVVFHGK-NN-SSVS  327 (419)
T ss_pred             EEcccC-CC----ccCccEECCCCCEEEEEECCC---------------CCceEEEEECCCCCeEeCccCCC-cC-ceEC
Confidence            444321 11    122347999995 77775321               22489999999888766654211 12 4899


Q ss_pred             cCCCEEEEEe
Q 030700          161 EDERFLVVCE  170 (173)
Q Consensus       161 ~dg~~lyv~~  170 (173)
                      |||+.|.++.
T Consensus       328 PDG~~Ia~~~  337 (419)
T PRK04043        328 TYKNYIVYSS  337 (419)
T ss_pred             CCCCEEEEEE
Confidence            9999776653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=98.40  E-value=1.7e-05  Score=61.97  Aligned_cols=123  Identities=15%  Similarity=0.200  Sum_probs=71.7

Q ss_pred             EEEEc-CCCeEEEEcCC-CcEEEeccccCc-cccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCC
Q 030700           23 LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQ-SLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFA   96 (173)
Q Consensus        23 l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~-p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~   96 (173)
                      +||+. ..+.|..+|.+ .+.....+.+.. +. ++++++||+.+|+++....+-.+|. ++  ...+.   .+   ..|
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~-~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~---~G---~~~   80 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHA-GLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIK---VG---GNP   80 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEE-EEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE----S---SEE
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCcee-EEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEe---cC---CCc
Confidence            34666 67889999854 444443344444 45 7889999999899987667777885 44  33432   22   468


Q ss_pred             ccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--------cCcceEEEccCCCEEE
Q 030700           97 NDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------YFANGVALSEDERFLV  167 (173)
Q Consensus        97 ~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~~p~gi~~~~dg~~ly  167 (173)
                      .++++++||+ +|+++..                 .+.+..+|.++.++.......        +.+.+|..+|.....+
T Consensus        81 ~~i~~s~DG~~~~v~n~~-----------------~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fV  143 (369)
T PF02239_consen   81 RGIAVSPDGKYVYVANYE-----------------PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFV  143 (369)
T ss_dssp             EEEEE--TTTEEEEEEEE-----------------TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEE
T ss_pred             ceEEEcCCCCEEEEEecC-----------------CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEE
Confidence            9999999997 6666532                 258888998877654433221        1234666677766544


Q ss_pred             EE
Q 030700          168 VC  169 (173)
Q Consensus       168 v~  169 (173)
                      ++
T Consensus       144 v~  145 (369)
T PF02239_consen  144 VN  145 (369)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

...

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.34  E-value=6.2e-05  Score=60.02  Aligned_cols=93  Identities=12%  Similarity=0.109  Sum_probs=54.8

Q ss_pred             cceEEEcCCCC-EEEEc---CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC---eEEEEccC-C-c
Q 030700           12 PEDVSVDGNGV-LYTAT---GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVSEE-G-V   81 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~~---~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~~~~~-g-~   81 (173)
                      ...++|+|+|. |.++.   .+..|+.++.. |+...+....+... .++|+|||+.|+++....   .|+.++.+ + .
T Consensus       206 v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~-~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~  284 (429)
T PRK01742        206 LMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGHNG-APAFSPDGSRLAFASSKDGVLNIYVMGANGGTP  284 (429)
T ss_pred             cccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCccC-ceeECCCCCEEEEEEecCCcEEEEEEECCCCCe
Confidence            46689999884 44433   23468999864 44444433333445 788999998656553222   46777754 4 4


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      ..+... .    .......++|||+ ++++
T Consensus       285 ~~lt~~-~----~~~~~~~wSpDG~~i~f~  309 (429)
T PRK01742        285 SQLTSG-A----GNNTEPSWSPDGQSILFT  309 (429)
T ss_pred             EeeccC-C----CCcCCEEECCCCCEEEEE
Confidence            443221 1    1345678888886 5554

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=98.33  E-value=7.3e-05  Score=54.36  Aligned_cols=142  Identities=15%  Similarity=0.128  Sum_probs=88.2

Q ss_pred             cceEEEcCC-CCEEEEcCCCeEEEEcCCCc--EEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEE
Q 030700           12 PEDVSVDGN-GVLYTATGDGWIKRMHPNGT--WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVL   84 (173)
Q Consensus        12 p~~l~~~~~-g~l~~~~~~~~i~~~~~~g~--~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~   84 (173)
                      ...++.+|+ +.|++++..|.|+.||.-..  .....++ ..... .+++.+||..+..++.....+..+. .+  .+.+
T Consensus       127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~-sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l  205 (311)
T KOG0315|consen  127 VNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQ-SLTVMPDGSMLAAANNKGNCYVWRLLNHQTASEL  205 (311)
T ss_pred             cceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCccee-eEEEcCCCcEEEEecCCccEEEEEccCCCccccc
Confidence            356888895 68999999999999995332  2223333 33445 8999999999554544444555552 22  3333


Q ss_pred             EeccCCc-cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeecc-ccCcceEEEcc
Q 030700           85 VSQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG-LYFANGVALSE  161 (173)
Q Consensus        85 ~~~~~~~-~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~p~gi~~~~  161 (173)
                      .....-+ .-.+.-...++||++.++|.++                 +..+..++.++- +.+...++ -+.-=+.+||.
T Consensus       206 ~P~~k~~ah~~~il~C~lSPd~k~lat~ss-----------------dktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~  268 (311)
T KOG0315|consen  206 EPVHKFQAHNGHILRCLLSPDVKYLATCSS-----------------DKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA  268 (311)
T ss_pred             eEhhheecccceEEEEEECCCCcEEEeecC-----------------CceEEEEecCCceeeEEEeecCCceEEeeeecc
Confidence            2211100 0124455688999998888654                 356777776654 45555544 34555899999


Q ss_pred             CCCEEEEEec
Q 030700          162 DERFLVVCES  171 (173)
Q Consensus       162 dg~~lyv~~~  171 (173)
                      |+++|+-+.+
T Consensus       269 dg~YlvTass  278 (311)
T KOG0315|consen  269 DGEYLVTASS  278 (311)
T ss_pred             CccEEEecCC
Confidence            9998876543

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=98.33  E-value=5.4e-05  Score=57.00  Aligned_cols=136  Identities=20%  Similarity=0.247  Sum_probs=84.4

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEE-ec--------ccc-CccccceEEccCCcEEEEEeCCC----eEEEE
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WH--------QVG-SQSLLGLTTTKENNVIIVCDSQQ----GLLKV   76 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~-~~--------~~~-~~p~~gl~~~~~g~l~~v~~~~~----~i~~~   76 (173)
                      ...+++ .++.+||.. .-.++..++++-+... |.        ++- =+.+ |||+ .+|+-.||+.-+.    .-++-
T Consensus       105 iHdia~-~~~~l~fVNT~fSCLatl~~~~SF~P~WkPpFIs~la~eDRCHLN-GlA~-~~g~p~yVTa~~~sD~~~gWR~  181 (335)
T TIGR03032       105 AHDLAL-GAGRLLFVNTLFSCLATVSPDYSFVPLWKPPFISKLAPEDRCHLN-GMAL-DDGEPRYVTALSQSDVADGWRE  181 (335)
T ss_pred             hhheee-cCCcEEEEECcceeEEEECCCCccccccCCccccccCccCceeec-ceee-eCCeEEEEEEeeccCCcccccc
Confidence            556777 456677655 4566777776554332 21        111 1356 9999 5666668765221    12222


Q ss_pred             cc-CCcEEEEeccCC----ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc
Q 030700           77 SE-EGVTVLVSQFNG----SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL  151 (173)
Q Consensus        77 ~~-~g~~~~~~~~~~----~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  151 (173)
                      .. +| ..+.+...+    ..+..|++-... +|++|+.|..                 .+.+.++|+++|+.+.++.-.
T Consensus       182 ~~~~g-G~vidv~s~evl~~GLsmPhSPRWh-dgrLwvldsg-----------------tGev~~vD~~~G~~e~Va~vp  242 (335)
T TIGR03032       182 GRRDG-GCVIDIPSGEVVASGLSMPHSPRWY-QGKLWLLNSG-----------------RGELGYVDPQAGKFQPVAFLP  242 (335)
T ss_pred             cccCC-eEEEEeCCCCEEEcCccCCcCCcEe-CCeEEEEECC-----------------CCEEEEEcCCCCcEEEEEECC
Confidence            21 22 001111111    113467777777 6899999854                 379999999989999998888


Q ss_pred             cCcceEEEccCCCEEEEEec
Q 030700          152 YFANGVALSEDERFLVVCES  171 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ..|.||+|.  |++++|+-+
T Consensus       243 G~~rGL~f~--G~llvVgmS  260 (335)
T TIGR03032       243 GFTRGLAFA--GDFAFVGLS  260 (335)
T ss_pred             CCCccccee--CCEEEEEec
Confidence            899999997  888888643

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PRK00178 tolB translocation protein TolB; Provisional

Probab=98.32  E-value=0.00012  Score=58.23  Aligned_cols=135  Identities=11%  Similarity=0.079  Sum_probs=82.8

Q ss_pred             eEEEcCCCC-EEEEc-C--CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeC-C--CeEEEEcc-CC-cEE
Q 030700           14 DVSVDGNGV-LYTAT-G--DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVSE-EG-VTV   83 (173)
Q Consensus        14 ~l~~~~~g~-l~~~~-~--~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~--~~i~~~~~-~g-~~~   83 (173)
                      .++|+|+|. |+++. .  ...|+.++.+ +....+........ ...|++||+.++++.. .  ..++.++. +| .+.
T Consensus       247 ~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~-~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~  325 (430)
T PRK00178        247 APAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNHPAIDT-EPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAER  325 (430)
T ss_pred             CeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccCCCCcC-CeEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence            588999884 65443 3  3369999865 44554433333445 6789999986555432 2  25777775 45 444


Q ss_pred             EEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      +..  .+   .......++|||+ ++++...               .....|+.+|+++++.+.+... .......|+||
T Consensus       326 lt~--~~---~~~~~~~~Spdg~~i~~~~~~---------------~~~~~l~~~dl~tg~~~~lt~~-~~~~~p~~spd  384 (430)
T PRK00178        326 VTF--VG---NYNARPRLSADGKTLVMVHRQ---------------DGNFHVAAQDLQRGSVRILTDT-SLDESPSVAPN  384 (430)
T ss_pred             eec--CC---CCccceEECCCCCEEEEEEcc---------------CCceEEEEEECCCCCEEEccCC-CCCCCceECCC
Confidence            431  11   1223568899996 5555321               0123689999988877666543 22335689999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      |+.++++.
T Consensus       385 g~~i~~~~  392 (430)
T PRK00178        385 GTMLIYAT  392 (430)
T ss_pred             CCEEEEEE
Confidence            99888764

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.31  E-value=9.9e-05  Score=58.62  Aligned_cols=141  Identities=18%  Similarity=0.221  Sum_probs=94.8

Q ss_pred             ccCCcceEEEcCCCCEEEEcCCCeEEEEcCCC-cE--EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEE
Q 030700            8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TW--EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTV   83 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~--~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~   83 (173)
                      --+...+++....+.+|....+..+.+.+..+ ..  ....+.+..|. |++..+++.+++++... .++.+.. .+...
T Consensus       362 h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~-~lav~~d~~~avv~~~~-~iv~l~~~~~~~~  439 (603)
T KOG0318|consen  362 HTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPK-GLAVLSDGGTAVVACIS-DIVLLQDQTKVSS  439 (603)
T ss_pred             ccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCce-eEEEcCCCCEEEEEecC-cEEEEecCCccee
Confidence            34556778887778999888888888887432 22  12235577899 99999998775665544 4666664 44333


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--E-EeeccccCcceEEEc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--S-LVLDGLYFANGVALS  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~-~~~~~~~~p~gi~~~  160 (173)
                      ....      ..+..++++|++...+.-                 ..++.|+.|...+++.  + +.......+..+++|
T Consensus       440 ~~~~------y~~s~vAv~~~~~~vaVG-----------------G~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vayS  496 (603)
T KOG0318|consen  440 IPIG------YESSAVAVSPDGSEVAVG-----------------GQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYS  496 (603)
T ss_pred             eccc------cccceEEEcCCCCEEEEe-----------------cccceEEEEEecCCcccceeeeecccCCceEEEEC
Confidence            2211      357889999999754441                 2346777777765442  2 233445667899999


Q ss_pred             cCCCEEEEEecCC
Q 030700          161 EDERFLVVCESWK  173 (173)
Q Consensus       161 ~dg~~lyv~~~~~  173 (173)
                      ||+.+|.++|..|
T Consensus       497 pd~~yla~~Da~r  509 (603)
T KOG0318|consen  497 PDGAYLAAGDASR  509 (603)
T ss_pred             CCCcEEEEeccCC
Confidence            9999999998775

>PRK02889 tolB translocation protein TolB; Provisional

Probab=98.29  E-value=8.5e-05  Score=59.21  Aligned_cols=126  Identities=10%  Similarity=0.077  Sum_probs=76.0

Q ss_pred             EEEEcC--CCeEEEEcCCCcE-EEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-cEEEEeccCCcccc
Q 030700           23 LYTATG--DGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-VTVLVSQFNGSQLR   94 (173)
Q Consensus        23 l~~~~~--~~~i~~~~~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~~~~~~~~~~~~~~   94 (173)
                      .|++..  ...|+.+|.+|.. ..+........ ..+++|||+.++++...   ..++.++. .| ...+. ...+    
T Consensus       167 ayv~~~~~~~~L~~~D~dG~~~~~l~~~~~~v~-~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~-~~~g----  240 (427)
T PRK02889        167 AYVIKTGNRYQLQISDADGQNAQSALSSPEPII-SPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVA-NFKG----  240 (427)
T ss_pred             EEEEccCCccEEEEECCCCCCceEeccCCCCcc-cceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEee-cCCC----
Confidence            445542  3468888877753 33323333345 78899999765554432   24777775 45 44443 2222    


Q ss_pred             CCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700           95 FANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus        95 ~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .....+++|||+ ++++...               .....||.+|.+++..+.+..........+|+|||+.|+++
T Consensus       241 ~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~  301 (427)
T PRK02889        241 SNSAPAWSPDGRTLAVALSR---------------DGNSQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFT  301 (427)
T ss_pred             CccceEECCCCCEEEEEEcc---------------CCCceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEE
Confidence            334689999996 5554221               12247999998877766665443344567899999987754

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.29  E-value=0.00018  Score=52.19  Aligned_cols=134  Identities=21%  Similarity=0.238  Sum_probs=85.2

Q ss_pred             ceEEEcCCC-CEEEEcCCCeEEEEcCCC--cEEEeccccCccccceEEccCCcEEEEEeC-CCeEEEEccC-C--cEEEE
Q 030700           13 EDVSVDGNG-VLYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVSEE-G--VTVLV   85 (173)
Q Consensus        13 ~~l~~~~~g-~l~~~~~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~~~i~~~~~~-g--~~~~~   85 (173)
                      ..+.+.+++ .++++..++.|..|+...  ....+........ .+.+++++++ +++.. ...+..++.. +  ...+.
T Consensus        55 ~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~  132 (289)
T cd00200          55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVS-SVAFSPDGRI-LSSSSRDKTIKVWDVETGKCLTTLR  132 (289)
T ss_pred             eEEEECCCCCEEEEEcCCCeEEEEEcCcccceEEEeccCCcEE-EEEEcCCCCE-EEEecCCCeEEEEECCCcEEEEEec
Confidence            478888887 555666788999998654  2333433344567 8999999888 44444 4455555643 4  22222


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDER  164 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~  164 (173)
                       ..    ...+..+.++|++.++++..                 .++.+..+|..+++....... ......++|+|+++
T Consensus       133 -~~----~~~i~~~~~~~~~~~l~~~~-----------------~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~  190 (289)
T cd00200         133 -GH----TDWVNSVAFSPDGTFVASSS-----------------QDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGE  190 (289)
T ss_pred             -cC----CCcEEEEEEcCcCCEEEEEc-----------------CCCcEEEEEccccccceeEecCccccceEEECCCcC
Confidence             11    13567899999887766632                 236788888875554333332 33567899999998


Q ss_pred             EEEEEe
Q 030700          165 FLVVCE  170 (173)
Q Consensus       165 ~lyv~~  170 (173)
                      .++++.
T Consensus       191 ~l~~~~  196 (289)
T cd00200         191 KLLSSS  196 (289)
T ss_pred             EEEEec
Confidence            777764

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=98.27  E-value=0.00014  Score=58.02  Aligned_cols=57  Identities=14%  Similarity=0.224  Sum_probs=42.3

Q ss_pred             cceEEEcCCCCEEEEc--C-------------------------------CCeEEEEcCCCcE------------EEecc
Q 030700           12 PEDVSVDGNGVLYTAT--G-------------------------------DGWIKRMHPNGTW------------EDWHQ   46 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~--~-------------------------------~~~i~~~~~~g~~------------~~~~~   46 (173)
                      -..|+|+|+|.||++.  .                               .|+|+|+++||+.            +.+.-
T Consensus       148 GgrI~FgPDG~LYVs~GD~g~~~~~n~~~~~~aQ~~~~~~~~~~~d~~~~~GkILRin~DGsiP~dNPf~~g~~~eIyA~  227 (454)
T TIGR03606       148 GGRLVFGPDGKIYYTIGEQGRNQGANFFLPNQAQHTPTQQELNGKDYHAYMGKVLRLNLDGSIPKDNPSINGVVSHIFTY  227 (454)
T ss_pred             CceEEECCCCcEEEEECCCCCCCcccccCcchhccccccccccccCcccCceEEEEEcCCCCCCCCCCccCCCcceEEEE
Confidence            4568999999999855  2                               1368899888753            23333


Q ss_pred             ccCccccceEEccCCcEEEEEeCC
Q 030700           47 VGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        47 ~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ....|. |++|+++|++ |+++.+
T Consensus       228 G~RNp~-Gla~dp~G~L-w~~e~G  249 (454)
T TIGR03606       228 GHRNPQ-GLAFTPDGTL-YASEQG  249 (454)
T ss_pred             eccccc-eeEECCCCCE-EEEecC
Confidence            445799 9999999998 998855

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=98.26  E-value=0.00018  Score=52.30  Aligned_cols=138  Identities=18%  Similarity=0.184  Sum_probs=88.4

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      ....+++++|++.++++. .++.|..++.. ++. ..+........ .+.++++++.++++.....+..++. .+  ...
T Consensus       136 ~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~  214 (289)
T cd00200         136 DWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVN-SVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGT  214 (289)
T ss_pred             CcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccc-eEEECCCcCEEEEecCCCcEEEEECCCCceecc
Confidence            346789999987766655 48889999854 443 23333334567 8999999977566655444555554 33  222


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d  162 (173)
                      +. ..    ...+..+.+++++.++++..                 .++.+..++..+++....... ...+..++|+++
T Consensus       215 ~~-~~----~~~i~~~~~~~~~~~~~~~~-----------------~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~  272 (289)
T cd00200         215 LR-GH----ENGVNSVAFSPDGYLLASGS-----------------EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPD  272 (289)
T ss_pred             hh-hc----CCceEEEEEcCCCcEEEEEc-----------------CCCcEEEEEcCCceeEEEccccCCcEEEEEECCC
Confidence            21 11    12567799999987777642                 236888888876554443332 345678999999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      ++.|+++.
T Consensus       273 ~~~l~~~~  280 (289)
T cd00200         273 GKRLASGS  280 (289)
T ss_pred             CCEEEEec
Confidence            88887754

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.24  E-value=0.00013  Score=59.94  Aligned_cols=158  Identities=15%  Similarity=0.155  Sum_probs=84.0

Q ss_pred             cCCcceEEEcC--CC-CEEEEc-CCCeEEEEcCCC----cEEEeccccCccccceEEc-------------------cCC
Q 030700            9 VNHPEDVSVDG--NG-VLYTAT-GDGWIKRMHPNG----TWEDWHQVGSQSLLGLTTT-------------------KEN   61 (173)
Q Consensus         9 ~~~p~~l~~~~--~g-~l~~~~-~~~~i~~~~~~g----~~~~~~~~~~~p~~gl~~~-------------------~~g   61 (173)
                      +..|.-=..+.  +| .||+-| .+.+|-|++.+-    ++..+ +.....+ |+.+.                   +||
T Consensus       127 ~HHp~~s~t~g~ydGr~~findk~n~Rvari~l~~~~~~~i~~i-Pn~~~~H-g~~~~~~p~t~yv~~~~e~~~PlpnDG  204 (635)
T PRK02888        127 THHPHMSFTDGTYDGRYLFINDKANTRVARIRLDVMKCDKITEL-PNVQGIH-GLRPQKIPRTGYVFCNGEFRIPLPNDG  204 (635)
T ss_pred             cCCCcccccCCccceeEEEEecCCCcceEEEECccEeeceeEeC-CCccCcc-ccCccccCCccEEEeCcccccccCCCC
Confidence            34444444444  67 477777 788999888653    23332 2222334 44443                   344


Q ss_pred             cEEEEEeCCCeEEE-EccCCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcc---------cce--------
Q 030700           62 NVIIVCDSQQGLLK-VSEEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------EYY--------  122 (173)
Q Consensus        62 ~l~~v~~~~~~i~~-~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~---------~~~--------  122 (173)
                      +.++....+.+++. +|.+-.+...+..-+   ..|+.+.++++|. +|+++.....+..         ++.        
T Consensus       205 k~l~~~~ey~~~vSvID~etmeV~~qV~Vd---gnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~i  281 (635)
T PRK02888        205 KDLDDPKKYRSLFTAVDAETMEVAWQVMVD---GNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARI  281 (635)
T ss_pred             CEeecccceeEEEEEEECccceEEEEEEeC---CCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHH
Confidence            44333332323222 332221111111111   3789999999986 6777532211100         000        


Q ss_pred             eeeccc-----CCCceEEEEcCCC-----CeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          123 LDLVSG-----EPHGVLLKYDPST-----NQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       123 ~~~~~~-----~~~~~v~~~d~~~-----~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ......     -..++|..+|..+     .++.........|.|+++||||+++|++.-
T Consensus       282 ea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVank  340 (635)
T PRK02888        282 EEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGK  340 (635)
T ss_pred             HHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCC
Confidence            000111     0235788889876     345555566789999999999999999864

>PRK01742 tolB translocation protein TolB; Provisional

Probab=98.23  E-value=0.00014  Score=58.05  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=72.9

Q ss_pred             CeEEEEcCCCcEE-EeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcC
Q 030700           30 GWIKRMHPNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEAS  103 (173)
Q Consensus        30 ~~i~~~~~~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~  103 (173)
                      ..|+.+|.+|.-. .+........ .++++|||+.++++...   ..++.++. .| .+.+. ...+    ....++++|
T Consensus       184 ~~i~i~d~dg~~~~~lt~~~~~v~-~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~-~~~g----~~~~~~wSP  257 (429)
T PRK01742        184 YEVRVADYDGFNQFIVNRSSQPLM-SPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVA-SFRG----HNGAPAFSP  257 (429)
T ss_pred             EEEEEECCCCCCceEeccCCCccc-cceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEe-cCCC----ccCceeECC
Confidence            4677788777533 2222233345 88999999765544322   24777775 45 44443 2222    234689999


Q ss_pred             CCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       104 dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      ||+ ++++...               ...-.||.+|.+++..+.+..........+|+|||+.|+++
T Consensus       258 DG~~La~~~~~---------------~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~  309 (429)
T PRK01742        258 DGSRLAFASSK---------------DGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFT  309 (429)
T ss_pred             CCCEEEEEEec---------------CCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEE
Confidence            997 5554211               01136899998877776666554455679999999987764

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=98.22  E-value=0.00028  Score=55.70  Aligned_cols=138  Identities=12%  Similarity=0.124  Sum_probs=83.5

Q ss_pred             cceEEEcCCCC-EEEEc-C--CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeC-C--CeEEEEccCC--c
Q 030700           12 PEDVSVDGNGV-LYTAT-G--DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q--QGLLKVSEEG--V   81 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~~-~--~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~--~~i~~~~~~g--~   81 (173)
                      ...++|.|+|. |+++. .  ...|+.++.++ ....+........ ...++++|+.++++.. .  ..++.++.++  .
T Consensus       236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~  314 (417)
T TIGR02800       236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNGPGIDT-EPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV  314 (417)
T ss_pred             ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCCCCCCC-CEEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            34578999884 66543 2  34699998654 4444433333334 6678999876555432 2  2578777544  4


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      ..+...  +   .....+.++|||+ ++++...               ....+|+.+|.+++..+.+... ......+|+
T Consensus       315 ~~l~~~--~---~~~~~~~~spdg~~i~~~~~~---------------~~~~~i~~~d~~~~~~~~l~~~-~~~~~p~~s  373 (417)
T TIGR02800       315 RRLTFR--G---GYNASPSWSPDGDLIAFVHRE---------------GGGFNIAVMDLDGGGERVLTDT-GLDESPSFA  373 (417)
T ss_pred             EEeecC--C---CCccCeEECCCCCEEEEEEcc---------------CCceEEEEEeCCCCCeEEccCC-CCCCCceEC
Confidence            443321  1   2345678999997 5555322               1224899999987766555443 233456899


Q ss_pred             cCCCEEEEEec
Q 030700          161 EDERFLVVCES  171 (173)
Q Consensus       161 ~dg~~lyv~~~  171 (173)
                      |||+.|+++..
T Consensus       374 pdg~~l~~~~~  384 (417)
T TIGR02800       374 PNGRMILYATT  384 (417)
T ss_pred             CCCCEEEEEEe
Confidence            99998877643

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=98.21  E-value=0.00011  Score=58.30  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=81.1

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC--cEEEEe
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVS   86 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g--~~~~~~   86 (173)
                      .+|-++++.++|.+-+......|..+...+..... +....+. ++++++++..+.|. ...+-+.+. ..|  ......
T Consensus       406 ~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~-~~~y~~s-~vAv~~~~~~vaVG-G~Dgkvhvysl~g~~l~ee~~  482 (603)
T KOG0318|consen  406 SQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI-PIGYESS-AVAVSPDGSEVAVG-GQDGKVHVYSLSGDELKEEAK  482 (603)
T ss_pred             CCceeEEEcCCCCEEEEEecCcEEEEecCCcceee-ccccccc-eEEEcCCCCEEEEe-cccceEEEEEecCCcccceee
Confidence            46889999998744433333446666433344433 3555677 99999999883333 333333333 233  222222


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe--eccccCcceEEEccCCC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LDGLYFANGVALSEDER  164 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~~~~~p~gi~~~~dg~  164 (173)
                      ..+..  .-+..++++|||.++++..                 .++.+..||..+++....  +-.-...+.|+|+|+.+
T Consensus       483 ~~~h~--a~iT~vaySpd~~yla~~D-----------------a~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~  543 (603)
T KOG0318|consen  483 LLEHR--AAITDVAYSPDGAYLAAGD-----------------ASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNK  543 (603)
T ss_pred             eeccc--CCceEEEECCCCcEEEEec-----------------cCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCce
Confidence            11111  3578899999998777532                 336888899887765322  22346678999999986


Q ss_pred             EE
Q 030700          165 FL  166 (173)
Q Consensus       165 ~l  166 (173)
                      .+
T Consensus       544 ~v  545 (603)
T KOG0318|consen  544 LV  545 (603)
T ss_pred             EE
Confidence            43

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=98.18  E-value=0.00031  Score=53.08  Aligned_cols=141  Identities=18%  Similarity=0.259  Sum_probs=84.8

Q ss_pred             CCcceEEEcC-C-----CCEEEEc-CCCeEEEEcC-CCcEEEecc--------------------ccCccccceEEcc--
Q 030700           10 NHPEDVSVDG-N-----GVLYTAT-GDGWIKRMHP-NGTWEDWHQ--------------------VGSQSLLGLTTTK--   59 (173)
Q Consensus        10 ~~p~~l~~~~-~-----g~l~~~~-~~~~i~~~~~-~g~~~~~~~--------------------~~~~p~~gl~~~~--   59 (173)
                      .....+++|. +     +.+|++| ..+.|..+|. +|+..++..                    ...... |++.++  
T Consensus        61 s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~-gial~~~~  139 (287)
T PF03022_consen   61 SFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIF-GIALSPIS  139 (287)
T ss_dssp             GGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEE-EEEE-TTS
T ss_pred             cccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCcc-ccccCCCC
Confidence            3456688886 2     5799999 5567888884 454332211                    011245 777765  


Q ss_pred             -CCcEEEEEeCC-CeEEEEc----cCC---cEE-EEecc--CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecc
Q 030700           60 -ENNVIIVCDSQ-QGLLKVS----EEG---VTV-LVSQF--NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS  127 (173)
Q Consensus        60 -~g~l~~v~~~~-~~i~~~~----~~g---~~~-~~~~~--~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~  127 (173)
                       +|+.||+.... ..++++.    .+.   ... +...+  -|.+.....++++|++|.+|+++..              
T Consensus       140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~g~~~D~~G~ly~~~~~--------------  205 (287)
T PF03022_consen  140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSDGMAIDPNGNLYFTDVE--------------  205 (287)
T ss_dssp             TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SECEEEEETTTEEEEEECC--------------
T ss_pred             CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCceEEECCCCcEEEecCC--------------
Confidence             77888988754 4678875    122   111 00000  0111135689999999999999743              


Q ss_pred             cCCCceEEEEcCCC----CeeEEeec--c-ccCcceEEEcc--CCCEEEEE
Q 030700          128 GEPHGVLLKYDPST----NQTSLVLD--G-LYFANGVALSE--DERFLVVC  169 (173)
Q Consensus       128 ~~~~~~v~~~d~~~----~~~~~~~~--~-~~~p~gi~~~~--dg~~lyv~  169 (173)
                         .++|.++++++    ...+.++.  . +.+|.++.+++  +|. ||+.
T Consensus       206 ---~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~-L~v~  252 (287)
T PF03022_consen  206 ---QNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGY-LWVL  252 (287)
T ss_dssp             ---CTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEE
T ss_pred             ---CCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCce-EEEE
Confidence               36999999985    24444543  2 78999999999  774 7775

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.15  E-value=0.00021  Score=56.45  Aligned_cols=128  Identities=13%  Similarity=0.121  Sum_probs=81.4

Q ss_pred             EEEcCCC-eEEEEcCCCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEEEeccCCccccCCccE
Q 030700           24 YTATGDG-WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDV   99 (173)
Q Consensus        24 ~~~~~~~-~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l   99 (173)
                      .+++.+| .+-.++.+|. ..++....+... .+.++++|+.+++++....++.++ ++| .+.+-....    .-..++
T Consensus       375 vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~-av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~----~lItdf  449 (668)
T COG4946         375 VIGTNDGDKLGIYDKDGGEVKRIEKDLGNIE-AVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEY----GLITDF  449 (668)
T ss_pred             EEeccCCceEEEEecCCceEEEeeCCccceE-EEEEcCCCcEEEEEcCceEEEEEEecCCCeeEeccccc----ceeEEE
Confidence            3344333 6666776554 345555667777 899999999767887767899999 466 554432222    356788


Q ss_pred             EEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          100 IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       100 ~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      +++|+++++.=..-     +        +--...|-.+|.+++++-.+.+.-..-..=+|+||+++||.-
T Consensus       450 ~~~~nsr~iAYafP-----~--------gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfL  506 (668)
T COG4946         450 DWHPNSRWIAYAFP-----E--------GYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFL  506 (668)
T ss_pred             EEcCCceeEEEecC-----c--------ceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEE
Confidence            99999875442110     0        011246677788777766565544444456899999999973

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=98.15  E-value=0.00039  Score=51.68  Aligned_cols=135  Identities=16%  Similarity=0.144  Sum_probs=89.4

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCc-EEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEE-c-cCC--cEE
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKV-S-EEG--VTV   83 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~-~-~~g--~~~   83 (173)
                      ...+-.+.++++|..+..+.....||. .|+ ...+..+.+... +|.+.| ++++ ||+..-+...++ | ..+  .+.
T Consensus       147 ylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~-slsl~p~~~nt-FvSg~cD~~aklWD~R~~~c~qt  224 (343)
T KOG0286|consen  147 YLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVM-SLSLSPSDGNT-FVSGGCDKSAKLWDVRSGQCVQT  224 (343)
T ss_pred             eeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEE-EEecCCCCCCe-EEecccccceeeeeccCcceeEe
Confidence            344555666888888777888888884 564 445666677778 899999 8999 887654443333 4 355  666


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeecc--ccCcceEEEc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG--LYFANGVALS  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~--~~~p~gi~~~  160 (173)
                      +....     .-.|.+.+.|+|.-|++-                 +.++..-.||.... ++......  ....++++||
T Consensus       225 F~ghe-----sDINsv~ffP~G~afatG-----------------SDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS  282 (343)
T KOG0286|consen  225 FEGHE-----SDINSVRFFPSGDAFATG-----------------SDDATCRLYDLRADQELAVYSHDSIICGITSVAFS  282 (343)
T ss_pred             ecccc-----cccceEEEccCCCeeeec-----------------CCCceeEEEeecCCcEEeeeccCcccCCceeEEEc
Confidence            64332     246889999999888872                 23455555665533 34333322  3445789999


Q ss_pred             cCCCEEEEE
Q 030700          161 EDERFLVVC  169 (173)
Q Consensus       161 ~dg~~lyv~  169 (173)
                      ..||.||..
T Consensus       283 ~SGRlLfag  291 (343)
T KOG0286|consen  283 KSGRLLFAG  291 (343)
T ss_pred             ccccEEEee
Confidence            999988873

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=98.14  E-value=0.00041  Score=49.43  Aligned_cols=118  Identities=14%  Similarity=0.105  Sum_probs=69.9

Q ss_pred             eEEEEcCCC-cEEEecc-ccCccccceEEccCCcEEEEEeCC--CeEEEEccCC--cEEEEeccCCccccCCccEEEcCC
Q 030700           31 WIKRMHPNG-TWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASD  104 (173)
Q Consensus        31 ~i~~~~~~g-~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d  104 (173)
                      .|++++..+ ....+.. ..+... .++++|+|+.+.++...  ..+...+..+  ...+.    .   ...|.+.++|+
T Consensus        40 ~l~~~~~~~~~~~~i~l~~~~~I~-~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~----~---~~~n~i~wsP~  111 (194)
T PF08662_consen   40 ELFYLNEKNIPVESIELKKEGPIH-DVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG----T---QPRNTISWSPD  111 (194)
T ss_pred             EEEEEecCCCccceeeccCCCceE-EEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec----C---CCceEEEECCC
Confidence            466775433 3333222 223366 99999999875555332  2344445455  22221    1   35688999999


Q ss_pred             CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       105 G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      |++++....              +...|.|..+|..+.+...-. .......++|||||+++..+.+
T Consensus       112 G~~l~~~g~--------------~n~~G~l~~wd~~~~~~i~~~-~~~~~t~~~WsPdGr~~~ta~t  163 (194)
T PF08662_consen  112 GRFLVLAGF--------------GNLNGDLEFWDVRKKKKISTF-EHSDATDVEWSPDGRYLATATT  163 (194)
T ss_pred             CCEEEEEEc--------------cCCCcEEEEEECCCCEEeecc-ccCcEEEEEEcCCCCEEEEEEe
Confidence            987665321              112367888998754432222 2344678999999999887765

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=0.00014  Score=51.80  Aligned_cols=100  Identities=20%  Similarity=0.292  Sum_probs=69.8

Q ss_pred             CccccceEEccCCcEEEEEeCCCeEEEEccCC---cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeee
Q 030700           49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL  125 (173)
Q Consensus        49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~  125 (173)
                      +... ||+.|.+ ++ +.++....+.+.|+.-   ...+....++.|....|.+..- ||.+|.--.             
T Consensus       131 GeGW-gLt~d~~-~L-imsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw-------------  193 (262)
T COG3823         131 GEGW-GLTSDDK-NL-IMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVW-------------  193 (262)
T ss_pred             Ccce-eeecCCc-ce-EeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeee-------------
Confidence            3455 6665444 44 7777666677777633   4455555678888888999876 787776422             


Q ss_pred             cccCCCceEEEEcCCCCeeEEeec-------------cccCcceEEEccCCCEEEEE
Q 030700          126 VSGEPHGVLLKYDPSTNQTSLVLD-------------GLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       126 ~~~~~~~~v~~~d~~~~~~~~~~~-------------~~~~p~gi~~~~dg~~lyv~  169 (173)
                          .+.+|.|++|++|++..+.+             ....+||||+.|++..+|++
T Consensus       194 ----~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         194 ----QTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             ----eecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEe
Confidence                12489999999998876643             13467999999999889986

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.12  E-value=0.00016  Score=59.42  Aligned_cols=66  Identities=14%  Similarity=0.112  Sum_probs=44.4

Q ss_pred             EEeccccCccccceEEccCCcEEEEEeCCCe-EEEEccCC-cE-----------EEEeccCCccccCCccEEEcCCCcEE
Q 030700           42 EDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEG-VT-----------VLVSQFNGSQLRFANDVIEASDGSLY  108 (173)
Q Consensus        42 ~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~~g-~~-----------~~~~~~~~~~~~~~~~l~~~~dG~~~  108 (173)
                      ....+.+..|+ |+.++|||+.+|+++..+. +-.+|... ..           .+....-|   ..|-..++|++|+.|
T Consensus       314 ~~yIPVGKsPH-GV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG---lGPLHTaFDg~G~ay  389 (635)
T PRK02888        314 TRYVPVPKNPH-GVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG---LGPLHTAFDGRGNAY  389 (635)
T ss_pred             EEEEECCCCcc-ceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC---CCcceEEECCCCCEE
Confidence            34456677899 9999999999888876543 44444222 11           12222223   478899999999999


Q ss_pred             EEe
Q 030700          109 FTV  111 (173)
Q Consensus       109 v~~  111 (173)
                      ++-
T Consensus       390 tsl  392 (635)
T PRK02888        390 TTL  392 (635)
T ss_pred             EeE
Confidence            984

>PRK01029 tolB translocation protein TolB; Provisional

Probab=98.10  E-value=0.00078  Score=53.80  Aligned_cols=137  Identities=12%  Similarity=0.036  Sum_probs=79.3

Q ss_pred             ceEEEcCCC-CEEEEc-CCC--eEEE--EcCC----CcEEEeccc-cCccccceEEccCCcEEE-EEeCC--CeEEEEcc
Q 030700           13 EDVSVDGNG-VLYTAT-GDG--WIKR--MHPN----GTWEDWHQV-GSQSLLGLTTTKENNVII-VCDSQ--QGLLKVSE   78 (173)
Q Consensus        13 ~~l~~~~~g-~l~~~~-~~~--~i~~--~~~~----g~~~~~~~~-~~~p~~gl~~~~~g~l~~-v~~~~--~~i~~~~~   78 (173)
                      ..++|+||| .|.++. ..+  .++.  ++.+    |....+... .+... ..+++|||+.++ +++..  ..++.++.
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~-~p~wSPDG~~Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQG-NPSFSPDGTRLVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcC-CeEECCCCCEEEEEECCCCCceEEEEEC
Confidence            357899988 455443 222  4544  3422    233333222 23344 678999998534 44332  24666653


Q ss_pred             C--C--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC
Q 030700           79 E--G--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (173)
Q Consensus        79 ~--g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  153 (173)
                      +  +  .+.+.. ..    .......++|||+ ++++...               .....|+.+|+++++.+.+......
T Consensus       313 ~~~g~~~~~lt~-~~----~~~~~p~wSPDG~~Laf~~~~---------------~g~~~I~v~dl~~g~~~~Lt~~~~~  372 (428)
T PRK01029        313 DPEGQSPRLLTK-KY----RNSSCPAWSPDGKKIAFCSVI---------------KGVRQICVYDLATGRDYQLTTSPEN  372 (428)
T ss_pred             cccccceEEecc-CC----CCccceeECCCCCEEEEEEcC---------------CCCcEEEEEECCCCCeEEccCCCCC
Confidence            2  2  232221 11    2335678999997 5554321               1124799999998888777655444


Q ss_pred             cceEEEccCCCEEEEEe
Q 030700          154 ANGVALSEDERFLVVCE  170 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~  170 (173)
                      .....|+|||+.|+++.
T Consensus       373 ~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        373 KESPSWAIDSLHLVYSA  389 (428)
T ss_pred             ccceEECCCCCEEEEEE
Confidence            56789999999888753

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=98.09  E-value=0.00039  Score=51.30  Aligned_cols=135  Identities=19%  Similarity=0.202  Sum_probs=89.0

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-EEEeccc--cCccccceEEccCC-cEEEEEeCCCeEEEEcc-CCcE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WEDWHQV--GSQSLLGLTTTKEN-NVIIVCDSQQGLLKVSE-EGVT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-~~~~~~~--~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~~-~g~~   82 (173)
                      -..--+++++++.+-.++. .+..|.-|+.-|. ..++.+.  ..+.. ++.|+|+. +..++....++.+++.. .+.+
T Consensus       105 ~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs-cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~  183 (315)
T KOG0279|consen  105 TKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS-CVRFSPNESNPIIVSASWDKTVKVWNLRNCQ  183 (315)
T ss_pred             CCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEE-EEEEcCCCCCcEEEEccCCceEEEEccCCcc
Confidence            3445678888877555554 6677777775443 3334333  45788 99999985 44245555566777664 5422


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      . ...+.|.. ...+.++++|||.+.++-                 ..+|.++.+|.+.++...........+.++|+|.
T Consensus       184 l-~~~~~gh~-~~v~t~~vSpDGslcasG-----------------gkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspn  244 (315)
T KOG0279|consen  184 L-RTTFIGHS-GYVNTVTVSPDGSLCASG-----------------GKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPN  244 (315)
T ss_pred             h-hhcccccc-ccEEEEEECCCCCEEecC-----------------CCCceEEEEEccCCceeEeccCCCeEeeEEecCC
Confidence            1 11122221 467999999999988762                 2457899999887776556666788899999997


Q ss_pred             C
Q 030700          163 E  163 (173)
Q Consensus       163 g  163 (173)
                      .
T Consensus       245 r  245 (315)
T KOG0279|consen  245 R  245 (315)
T ss_pred             c
Confidence            4

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.05  E-value=0.0014  Score=49.61  Aligned_cols=97  Identities=15%  Similarity=0.258  Sum_probs=63.7

Q ss_pred             EEEcCCC-CEEEEc-----CCCeEEEEcCCCcEE---EeccccCccccceEEccCCcEEEEEeCC---C-----------
Q 030700           15 VSVDGNG-VLYTAT-----GDGWIKRMHPNGTWE---DWHQVGSQSLLGLTTTKENNVIIVCDSQ---Q-----------   71 (173)
Q Consensus        15 l~~~~~g-~l~~~~-----~~~~i~~~~~~g~~~---~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~-----------   71 (173)
                      -+|+++| .||++.     ..|.|-.||......   .|...+-.|+ -|.+.+||+.|+|++.+   +           
T Consensus        56 g~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPH-el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~  134 (305)
T PF07433_consen   56 GVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPH-ELLLMPDGETLVVANGGIETHPDSGRAKLNLD  134 (305)
T ss_pred             EEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChh-hEEEcCCCCEEEEEcCCCccCcccCceecChh
Confidence            4677888 466665     346788888764433   4444455799 99999999777999743   1           


Q ss_pred             ----eEEEEc-cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           72 ----GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        72 ----~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                          .+.++| .+|  +++.. ..+.....+...|+++++|.++++...
T Consensus       135 tM~psL~~ld~~sG~ll~q~~-Lp~~~~~lSiRHLa~~~~G~V~~a~Q~  182 (305)
T PF07433_consen  135 TMQPSLVYLDARSGALLEQVE-LPPDLHQLSIRHLAVDGDGTVAFAMQY  182 (305)
T ss_pred             hcCCceEEEecCCCceeeeee-cCccccccceeeEEecCCCcEEEEEec
Confidence                256665 356  33322 111222357888999999999998643

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.04  E-value=0.00073  Score=53.79  Aligned_cols=128  Identities=15%  Similarity=0.097  Sum_probs=77.2

Q ss_pred             CEEEEc-C---CCeEEEEcCCCcEEEeccccCccccceEEccCCc-EEEEEeCC---CeEEEEcc-CC-cEEEEeccCCc
Q 030700           22 VLYTAT-G---DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQ---QGLLKVSE-EG-VTVLVSQFNGS   91 (173)
Q Consensus        22 ~l~~~~-~---~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~---~~i~~~~~-~g-~~~~~~~~~~~   91 (173)
                      .+||+. .   ...|+..|.||.-.+.....+... ...++|||+ ++|++...   ..|+.++. .| .+.+.. ..+ 
T Consensus       157 ~~~v~~~~~~~~~~l~~~d~dg~~~~~~~~~~~~~-~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-  233 (419)
T PRK04043        157 KVVFSKYTGPKKSNIVLADYTLTYQKVIVKGGLNI-FPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-  233 (419)
T ss_pred             EEEEEEccCCCcceEEEECCCCCceeEEccCCCeE-eEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-
Confidence            456554 2   346788888886433222233333 788999997 34654322   35888885 55 555543 222 


Q ss_pred             cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           92 QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        92 ~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                         ......++|||+ +.++...               ..+..||.++.++++.+.+......-..-.|+|||+.||++.
T Consensus       234 ---~~~~~~~SPDG~~la~~~~~---------------~g~~~Iy~~dl~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~S  295 (419)
T PRK04043        234 ---MLVVSDVSKDGSKLLLTMAP---------------KGQPDIYLYDTNTKTLTQITNYPGIDVNGNFVEDDKRIVFVS  295 (419)
T ss_pred             ---cEEeeEECCCCCEEEEEEcc---------------CCCcEEEEEECCCCcEEEcccCCCccCccEECCCCCEEEEEE
Confidence               122356899995 6665322               123589999988887776654432233457999999888763

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=98.03  E-value=0.00063  Score=51.20  Aligned_cols=145  Identities=18%  Similarity=0.158  Sum_probs=86.5

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEEc-cCC-cEEEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS-EEG-VTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~-~~g-~~~~~   85 (173)
                      -..+|+|+++|+..++. .+..|.-|| .+|....-.-...... +..++| +.+..+++.....-+.++ .++ ...+.
T Consensus        67 pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~-~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp  145 (405)
T KOG1273|consen   67 PITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVW-GAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLP  145 (405)
T ss_pred             ceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccc-eeeeccccCCeEEEEEecCCcEEEEecCCceeecc
Confidence            35679999999776655 777888888 4676432111122233 666665 445535554443333333 335 33333


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--ccCcceEEEccCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDE  163 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p~gi~~~~dg  163 (173)
                      ..-++..-..+....+++.|+..++                 ++..|.+..++.++-++.....-  ......|.++..|
T Consensus       146 ~d~d~dln~sas~~~fdr~g~yIit-----------------GtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g  208 (405)
T KOG1273|consen  146 KDDDGDLNSSASHGVFDRRGKYIIT-----------------GTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKG  208 (405)
T ss_pred             CCCccccccccccccccCCCCEEEE-----------------ecCcceEEEEecchheeeeeeeechheeeeEEEEeccC
Confidence            3333333345566678899975444                 22448999999987655433322  3566789999999


Q ss_pred             CEEEEEecCC
Q 030700          164 RFLVVCESWK  173 (173)
Q Consensus       164 ~~lyv~~~~~  173 (173)
                      +++.+..+.|
T Consensus       209 ~~liiNtsDR  218 (405)
T KOG1273|consen  209 RFLIINTSDR  218 (405)
T ss_pred             cEEEEecCCc
Confidence            9888776654

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.02  E-value=0.0005  Score=55.33  Aligned_cols=137  Identities=19%  Similarity=0.252  Sum_probs=89.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-c--EEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc-c--CC-
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-T--WED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E--EG-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~--~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~--~g-   80 (173)
                      ..-.++.+.++|...++. .++.+..+...+ +  ... ......... .++|++++++ .++...+..+++. .  ++ 
T Consensus       160 ~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~-~~~fs~d~~~-l~s~s~D~tiriwd~~~~~~  237 (456)
T KOG0266|consen  160 PSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVS-DVAFSPDGSY-LLSGSDDKTLRIWDLKDDGR  237 (456)
T ss_pred             CceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhcccccccccee-eeEECCCCcE-EEEecCCceEEEeeccCCCe
Confidence            344557888888776555 566666665432 2  111 112233456 9999999998 6665555555554 2  23 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVA  158 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~  158 (173)
                       ...+... .    ...+.++++|+|+++++-                 ..++.|..+|..++++.....+ -...++++
T Consensus       238 ~~~~l~gH-~----~~v~~~~f~p~g~~i~Sg-----------------s~D~tvriWd~~~~~~~~~l~~hs~~is~~~  295 (456)
T KOG0266|consen  238 NLKTLKGH-S----TYVTSVAFSPDGNLLVSG-----------------SDDGTVRIWDVRTGECVRKLKGHSDGISGLA  295 (456)
T ss_pred             EEEEecCC-C----CceEEEEecCCCCEEEEe-----------------cCCCcEEEEeccCCeEEEeeeccCCceEEEE
Confidence             3333221 1    356899999999877763                 3457899999998877666655 45668899


Q ss_pred             EccCCCEEEEEe
Q 030700          159 LSEDERFLVVCE  170 (173)
Q Consensus       159 ~~~dg~~lyv~~  170 (173)
                      |++|++.|+.+.
T Consensus       296 f~~d~~~l~s~s  307 (456)
T KOG0266|consen  296 FSPDGNLLVSAS  307 (456)
T ss_pred             ECCCCCEEEEcC
Confidence            999999887763

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=98.01  E-value=0.00017  Score=61.25  Aligned_cols=101  Identities=16%  Similarity=0.073  Sum_probs=67.3

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC-cEEE
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG-VTVL   84 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g-~~~~   84 (173)
                      -..++|+|++.++++- .++.|..|+. +.+ +.++..+.+.+. |+.|||-|++ +.+...++.++++.   .| ...+
T Consensus       132 V~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VK-Gvs~DP~Gky-~ASqsdDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  132 VLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVK-GVSWDPIGKY-FASQSDDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             cceeccCCCccEEEEecccceEEEEccccceeeeeeeccccccc-ceEECCccCe-eeeecCCceEEEEEcccceeeEee
Confidence            4568999999888776 7889999983 333 344556677889 9999999998 77777777666653   34 3333


Q ss_pred             EeccCCcc-ccCCccEEEcCCCcEEEEeCcC
Q 030700           85 VSQFNGSQ-LRFANDVIEASDGSLYFTVSST  114 (173)
Q Consensus        85 ~~~~~~~~-~~~~~~l~~~~dG~~~v~~~~~  114 (173)
                      ...++.-+ -.....+..+|||.++++-.+.
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA~  240 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPNAV  240 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchhhc
Confidence            22222111 1244567788999877765443

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.98  E-value=7.5e-05  Score=57.72  Aligned_cols=141  Identities=17%  Similarity=0.117  Sum_probs=90.1

Q ss_pred             ecCCccCCcceEEEcCC--C-CEEEEcCCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030700            4 LGEGIVNHPEDVSVDGN--G-VLYTATGDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~--g-~l~~~~~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      ...|-.....++.|+|.  + .|-.+..+|.+.-|+.++.  +..+........ -++|+|+|++ ..+...+..+++++
T Consensus       212 ~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs-~VafHPsG~~-L~TasfD~tWRlWD  289 (459)
T KOG0272|consen  212 TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQETPLQDLEGHLARVS-RVAFHPSGKF-LGTASFDSTWRLWD  289 (459)
T ss_pred             EEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCcchhhhhcchhhhe-eeeecCCCce-eeecccccchhhcc
Confidence            33444566778899984  4 4444557777666665442  333434455667 8899999999 66655666777664


Q ss_pred             --CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcc
Q 030700           79 --EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFAN  155 (173)
Q Consensus        79 --~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~  155 (173)
                        .+.+.+......   ....++++.+||.+..+-+-.               ..++|  +|..+|....+..+ .....
T Consensus       290 ~~tk~ElL~QEGHs---~~v~~iaf~~DGSL~~tGGlD---------------~~~Rv--WDlRtgr~im~L~gH~k~I~  349 (459)
T KOG0272|consen  290 LETKSELLLQEGHS---KGVFSIAFQPDGSLAATGGLD---------------SLGRV--WDLRTGRCIMFLAGHIKEIL  349 (459)
T ss_pred             cccchhhHhhcccc---cccceeEecCCCceeeccCcc---------------chhhe--eecccCcEEEEeccccccee
Confidence              333333222222   367889999999988874321               22566  47778876666654 66678


Q ss_pred             eEEEccCCCEE
Q 030700          156 GVALSEDERFL  166 (173)
Q Consensus       156 gi~~~~dg~~l  166 (173)
                      +++|||+|-.|
T Consensus       350 ~V~fsPNGy~l  360 (459)
T KOG0272|consen  350 SVAFSPNGYHL  360 (459)
T ss_pred             eEeECCCceEE
Confidence            99999998544

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.98  E-value=0.00094  Score=48.82  Aligned_cols=133  Identities=12%  Similarity=0.086  Sum_probs=81.9

Q ss_pred             eEEEcC-CCCEEEEcCCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEeccCCc
Q 030700           14 DVSVDG-NGVLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNGS   91 (173)
Q Consensus        14 ~l~~~~-~g~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~~~   91 (173)
                      .+.|.. +..+.-+..++.|.-|| .+|..+........+. .+.++++|+++-+ ..+.+|.+++++.+..+.. ++- 
T Consensus       148 ~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~Vt-SlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs-~k~-  223 (334)
T KOG0278|consen  148 TVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVT-SLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKS-YKM-  223 (334)
T ss_pred             eEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCc-ceeeccCCCEEEE-ecCceeEEeccccccceee-ccC-
Confidence            344554 33444334556677777 4666554444445566 8999999999444 4566788888765322211 110 


Q ss_pred             cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-ecc-ccCcceEEEccCCCEEEEE
Q 030700           92 QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDG-LYFANGVALSEDERFLVVC  169 (173)
Q Consensus        92 ~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~-~~~p~gi~~~~dg~~lyv~  169 (173)
                      | ...+.-.++|+-.+||+-                 ..+..+++||-.|++-... ..+ +.....+.|+|||. +|.+
T Consensus       224 P-~nV~SASL~P~k~~fVaG-----------------ged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE-~yAs  284 (334)
T KOG0278|consen  224 P-CNVESASLHPKKEFFVAG-----------------GEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGE-LYAS  284 (334)
T ss_pred             c-cccccccccCCCceEEec-----------------CcceEEEEEeccCCceeeecccCCCCceEEEEECCCCc-eeec
Confidence            1 234556788988888872                 2457899999888754333 233 44456799999996 7764

>PRK01029 tolB translocation protein TolB; Provisional

Probab=97.97  E-value=0.0015  Score=52.21  Aligned_cols=129  Identities=16%  Similarity=0.055  Sum_probs=76.4

Q ss_pred             ceEEEcCCCC-EEEE-cCCC--eEEEEcCC--Cc-EEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccC-C-
Q 030700           13 EDVSVDGNGV-LYTA-TGDG--WIKRMHPN--GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEE-G-   80 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~-~~~~--~i~~~~~~--g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~-g-   80 (173)
                      ..++|+|+|. |++. +.++  .|+.++.+  +. ...+........ ...++|||+.++++...   ..++.++.+ | 
T Consensus       284 ~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~-~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~  362 (428)
T PRK01029        284 GNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSS-CPAWSPDGKKIAFCSVIKGVRQICVYDLATGR  362 (428)
T ss_pred             CCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCcc-ceeECCCCCEEEEEEcCCCCcEEEEEECCCCC
Confidence            4579999985 5544 4333  68887653  22 333322233345 67899999875655432   357777754 4 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                      .+.+... .    .......++|||+ ++++...               .....|+.++.++++.+.+..........+|
T Consensus       363 ~~~Lt~~-~----~~~~~p~wSpDG~~L~f~~~~---------------~g~~~L~~vdl~~g~~~~Lt~~~g~~~~p~W  422 (428)
T PRK01029        363 DYQLTTS-P----ENKESPSWAIDSLHLVYSAGN---------------SNESELYLISLITKKTRKIVIGSGEKRFPSW  422 (428)
T ss_pred             eEEccCC-C----CCccceEECCCCCEEEEEECC---------------CCCceEEEEECCCCCEEEeecCCCcccCcee
Confidence            4444322 1    2345688999996 5555321               1235899999988877766654333345567


Q ss_pred             ccC
Q 030700          160 SED  162 (173)
Q Consensus       160 ~~d  162 (173)
                      +|-
T Consensus       423 s~~  425 (428)
T PRK01029        423 GAF  425 (428)
T ss_pred             cCC
Confidence            663

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=97.94  E-value=0.00079  Score=55.83  Aligned_cols=94  Identities=20%  Similarity=0.134  Sum_probs=62.5

Q ss_pred             CCcceEEEcCCCCEEEEc--CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc----cCC-c
Q 030700           10 NHPEDVSVDGNGVLYTAT--GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS----EEG-V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~--~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~----~~g-~   81 (173)
                      -+-.+|++||.|.|.++.  ..-.|+.|+ .+|++..+......|-.+|.|++.|.+ .++...+..++++    ..+ +
T Consensus       436 ~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~-LaS~SWDkTVRiW~if~s~~~v  514 (893)
T KOG0291|consen  436 IQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSL-LASGSWDKTVRIWDIFSSSGTV  514 (893)
T ss_pred             eeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCe-EEeccccceEEEEEeeccCcee
Confidence            345789999999888665  334688888 578877665544444439999999999 5454454444443    245 6


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      +++.-.      .-.-++++.|||. +-|+
T Consensus       515 Etl~i~------sdvl~vsfrPdG~elaVa  538 (893)
T KOG0291|consen  515 ETLEIR------SDVLAVSFRPDGKELAVA  538 (893)
T ss_pred             eeEeec------cceeEEEEcCCCCeEEEE
Confidence            665422      2356788999996 5554

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=97.94  E-value=0.00021  Score=55.08  Aligned_cols=109  Identities=17%  Similarity=0.249  Sum_probs=64.2

Q ss_pred             ccccceEEccCCcEEEEEeCCCeEEEEccCC-c-EEEEec--cCCccccCCccEEEcCC----CcEEEEeCcCCcCcccc
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-TVLVSQ--FNGSQLRFANDVIEASD----GSLYFTVSSTKFTPAEY  121 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~-~~~~~~--~~~~~~~~~~~l~~~~d----G~~~v~~~~~~~~~~~~  121 (173)
                      .|. +|++.|||++ ||++....|+++..+| . ..+...  ..........+++++|+    +.+|+.-.....     
T Consensus         3 ~P~-~~a~~pdG~l-~v~e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~-----   75 (331)
T PF07995_consen    3 NPR-SMAFLPDGRL-LVAERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADE-----   75 (331)
T ss_dssp             SEE-EEEEETTSCE-EEEETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-T-----
T ss_pred             Cce-EEEEeCCCcE-EEEeCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccC-----
Confidence            578 9999999999 9999876788888777 4 444432  22223357899999994    789987432100     


Q ss_pred             eeeecccCCCceEEEEcCCCC-----eeEEeeccc-------cCcceEEEccCCCEEEEEe
Q 030700          122 YLDLVSGEPHGVLLKYDPSTN-----QTSLVLDGL-------YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       122 ~~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~-------~~p~gi~~~~dg~~lyv~~  170 (173)
                          .......+|.|+....+     ..+.+....       ....+|+|+||| .|||+-
T Consensus        76 ----~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~  131 (331)
T PF07995_consen   76 ----DGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSV  131 (331)
T ss_dssp             ----SSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEE
T ss_pred             ----CCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEe
Confidence                00112246666654333     223333221       223469999999 799974

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.93  E-value=2.4e-05  Score=37.58  Aligned_cols=27  Identities=33%  Similarity=0.647  Sum_probs=22.8

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRM   35 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~   35 (173)
                      +..|.|++++++|.||++| .+.+|.++
T Consensus         1 f~~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CcCCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            4679999999999999999 66777664

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.93  E-value=0.00053  Score=51.18  Aligned_cols=101  Identities=23%  Similarity=0.255  Sum_probs=62.1

Q ss_pred             CCcceEEEcC-CCCEEEEcC--CCeEEEEcCCC-cEEE-e-ccc-------cCccccceEEcc-CCcEEEEEeCCCeEEE
Q 030700           10 NHPEDVSVDG-NGVLYTATG--DGWIKRMHPNG-TWED-W-HQV-------GSQSLLGLTTTK-ENNVIIVCDSQQGLLK   75 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~~--~~~i~~~~~~g-~~~~-~-~~~-------~~~p~~gl~~~~-~g~l~~v~~~~~~i~~   75 (173)
                      .+-||+|+|| ++.|||+-.  --+|+.++..- .+.. . ...       ..... |+.+++ .+.+++.++....++.
T Consensus       181 ~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS-gl~~~~~~~~LLVLS~ESr~l~E  259 (316)
T COG3204         181 KGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS-GLEFNAITNSLLVLSDESRRLLE  259 (316)
T ss_pred             cCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc-cceecCCCCcEEEEecCCceEEE
Confidence            5789999999 568888762  23577775221 1110 0 000       12345 888886 4566455555566888


Q ss_pred             EccCC-cEEEEeccCC-----ccccCCccEEEcCCCcEEEEe
Q 030700           76 VSEEG-VTVLVSQFNG-----SQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        76 ~~~~g-~~~~~~~~~~-----~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      ++.+| .........|     .....+.++++|.+|++|++.
T Consensus       260 vd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvS  301 (316)
T COG3204         260 VDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVS  301 (316)
T ss_pred             EecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEEe
Confidence            88877 3322222221     123578999999999999985

>PTZ00421 coronin; Provisional

Probab=97.92  E-value=0.0041  Score=50.56  Aligned_cols=133  Identities=16%  Similarity=0.093  Sum_probs=77.8

Q ss_pred             CcceEEEcC-CCCEEE-EcCCCeEEEEcC-CCc--------EEEeccccCccccceEEccCC-cEEEEEeCCCeEEEEc-
Q 030700           11 HPEDVSVDG-NGVLYT-ATGDGWIKRMHP-NGT--------WEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS-   77 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~-~~~~~~i~~~~~-~g~--------~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~-   77 (173)
                      ...+++|+| ++.+++ +..++.|..|+. ++.        +..+........ .++|++++ ++ +++...++.++++ 
T Consensus        77 ~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~-~l~f~P~~~~i-LaSgs~DgtVrIWD  154 (493)
T PTZ00421         77 PIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVG-IVSFHPSAMNV-LASAGADMVVNVWD  154 (493)
T ss_pred             CEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEE-EEEeCcCCCCE-EEEEeCCCEEEEEE
Confidence            356899999 776554 448888988884 322        122323334566 89999975 56 4444444544444 


Q ss_pred             c-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc--
Q 030700           78 E-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY--  152 (173)
Q Consensus        78 ~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  152 (173)
                      . .+  ...+ ....    .....++++++|.++++..                 .++.|..||+.+++.........  
T Consensus       155 l~tg~~~~~l-~~h~----~~V~sla~spdG~lLatgs-----------------~Dg~IrIwD~rsg~~v~tl~~H~~~  212 (493)
T PTZ00421        155 VERGKAVEVI-KCHS----DQITSLEWNLDGSLLCTTS-----------------KDKKLNIIDPRDGTIVSSVEAHASA  212 (493)
T ss_pred             CCCCeEEEEE-cCCC----CceEEEEEECCCCEEEEec-----------------CCCEEEEEECCCCcEEEEEecCCCC
Confidence            3 44  2222 1111    2467899999998777632                 34788889988765433222221  


Q ss_pred             CcceEEEccCCCEEE
Q 030700          153 FANGVALSEDERFLV  167 (173)
Q Consensus       153 ~p~gi~~~~dg~~ly  167 (173)
                      ....+.|.+++..++
T Consensus       213 ~~~~~~w~~~~~~iv  227 (493)
T PTZ00421        213 KSQRCLWAKRKDLII  227 (493)
T ss_pred             cceEEEEcCCCCeEE
Confidence            223466666665444

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.89  E-value=0.00062  Score=56.51  Aligned_cols=141  Identities=11%  Similarity=0.123  Sum_probs=89.3

Q ss_pred             CCcceEEEcC-CCCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cE-E
Q 030700           10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VT-V   83 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~-~   83 (173)
                      +...+++|.| |.+.|++. -++++..|+ ++-++..|.+...... .+++.|||+.++|......+..++..+  .. .
T Consensus       410 dfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lIT-Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~  488 (712)
T KOG0283|consen  410 DFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLIT-AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSD  488 (712)
T ss_pred             CeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhhhhe-eEEeccCCceEEEEEeccEEEEEEccCCeEEEe
Confidence            4567899999 66777766 789998888 5777888888888888 999999999955544333344444444  21 1


Q ss_pred             E-EeccCCcc--ccCCccEEEcCCC--cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC---cc
Q 030700           84 L-VSQFNGSQ--LRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF---AN  155 (173)
Q Consensus        84 ~-~~~~~~~~--~~~~~~l~~~~dG--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~---p~  155 (173)
                      . ...-.+++  -....++.+.|--  ++.||.                  .+.+|-.||.....+.....++..   ..
T Consensus       489 ~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTS------------------nDSrIRI~d~~~~~lv~KfKG~~n~~SQ~  550 (712)
T KOG0283|consen  489 FHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTS------------------NDSRIRIYDGRDKDLVHKFKGFRNTSSQI  550 (712)
T ss_pred             eeEeeccCccccCceeeeeEecCCCCCeEEEec------------------CCCceEEEeccchhhhhhhcccccCCcce
Confidence            1 11111111  1246677777522  477774                  346888888754444333444433   34


Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      -..|+.||++|+.+
T Consensus       551 ~Asfs~Dgk~IVs~  564 (712)
T KOG0283|consen  551 SASFSSDGKHIVSA  564 (712)
T ss_pred             eeeEccCCCEEEEe
Confidence            57788898877664

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.87  E-value=0.00069  Score=52.62  Aligned_cols=140  Identities=12%  Similarity=0.127  Sum_probs=85.6

Q ss_pred             CCcceEEEcCCCCEEEEc-CC--CeEEEEcCCCcEEEeccc---cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-c
Q 030700           10 NHPEDVSVDGNGVLYTAT-GD--GWIKRMHPNGTWEDWHQV---GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~--~~i~~~~~~g~~~~~~~~---~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~   81 (173)
                      +...-+.|+++|+..++. .+  .-|+....+++.......   ..... -|.++||.+.|+.|.....+...|. .| .
T Consensus       225 dEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~-yi~wSPDdryLlaCg~~e~~~lwDv~tgd~  303 (519)
T KOG0293|consen  225 DEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVS-YIMWSPDDRYLLACGFDEVLSLWDVDTGDL  303 (519)
T ss_pred             CcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceE-EEEECCCCCeEEecCchHheeeccCCcchh
Confidence            445567888888777655 22  235556667774333222   22334 7889999999566654444555553 56 3


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc--ceEEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA--NGVAL  159 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p--~gi~~  159 (173)
                      ........   ..++...+.-|||.-+|+                 +++++.+..+|.+ |....-+.+.+.|  ..|++
T Consensus       304 ~~~y~~~~---~~S~~sc~W~pDg~~~V~-----------------Gs~dr~i~~wdlD-gn~~~~W~gvr~~~v~dlai  362 (519)
T KOG0293|consen  304 RHLYPSGL---GFSVSSCAWCPDGFRFVT-----------------GSPDRTIIMWDLD-GNILGNWEGVRDPKVHDLAI  362 (519)
T ss_pred             hhhcccCc---CCCcceeEEccCCceeEe-----------------cCCCCcEEEecCC-cchhhcccccccceeEEEEE
Confidence            32222111   146677888888865565                 3466889999998 4443334444434  58999


Q ss_pred             ccCCCEEEEEec
Q 030700          160 SEDERFLVVCES  171 (173)
Q Consensus       160 ~~dg~~lyv~~~  171 (173)
                      ++||++++....
T Consensus       363 t~Dgk~vl~v~~  374 (519)
T KOG0293|consen  363 TYDGKYVLLVTV  374 (519)
T ss_pred             cCCCcEEEEEec
Confidence            999999887643

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.86  E-value=0.00046  Score=54.92  Aligned_cols=72  Identities=14%  Similarity=0.153  Sum_probs=47.2

Q ss_pred             cCCcceEEEcCCC-CEEEEcCCCeEEEEcCCCcE------EEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030700            9 VNHPEDVSVDGNG-VLYTATGDGWIKRMHPNGTW------EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG   80 (173)
Q Consensus         9 ~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~~------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g   80 (173)
                      ..-...+++||.| +++.+..+..|..||..|.-      ..+.++..++.+.+.+++.|..+++.........+|.+|
T Consensus       167 tk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG  245 (641)
T KOG0772|consen  167 TKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDG  245 (641)
T ss_pred             ceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCC
Confidence            4556789999988 56666677889999976632      122233344444899999888844443334566667788

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.84  E-value=0.00035  Score=57.62  Aligned_cols=134  Identities=12%  Similarity=0.128  Sum_probs=84.3

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEE-EcCCC--cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC--cEEE
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKR-MHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVL   84 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~-~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g--~~~~   84 (173)
                      ...+.|.|-|..|++....+.-| |..+-  -...+..+..... ++.|+|+..+ ..+...++.++++  ..|  ++.+
T Consensus       496 VwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~-cv~FHPNs~Y-~aTGSsD~tVRlWDv~~G~~VRiF  573 (707)
T KOG0263|consen  496 VWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVD-CVSFHPNSNY-VATGSSDRTVRLWDVSTGNSVRIF  573 (707)
T ss_pred             eeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccc-eEEECCcccc-cccCCCCceEEEEEcCCCcEEEEe
Confidence            34577888888777763333333 33222  2233444455566 8999999876 5454445566655  367  4554


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~~~~dg  163 (173)
                       ....    .....++++|+|+..++                 +..++.|..||..+++. ..+...-...+.|.||.||
T Consensus       574 -~GH~----~~V~al~~Sp~Gr~LaS-----------------g~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg  631 (707)
T KOG0263|consen  574 -TGHK----GPVTALAFSPCGRYLAS-----------------GDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDG  631 (707)
T ss_pred             -cCCC----CceEEEEEcCCCceEee-----------------cccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCC
Confidence             3322    35678999999986665                 23457899999887654 2333345566789999999


Q ss_pred             CEEEEE
Q 030700          164 RFLVVC  169 (173)
Q Consensus       164 ~~lyv~  169 (173)
                      ..|.+.
T Consensus       632 ~vLasg  637 (707)
T KOG0263|consen  632 NVLASG  637 (707)
T ss_pred             CEEEec
Confidence            866653

>TIGR03032 conserved hypothetical protein TIGR03032

Probab=97.82  E-value=7.6e-05  Score=56.21  Aligned_cols=64  Identities=19%  Similarity=0.282  Sum_probs=54.2

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      +.+.+| +..|+++.|. +|+||+.+ ..|.++++|++ |+.+.+....+.|. ||+|.  |++++|+.+.
T Consensus       196 evl~~G-LsmPhSPRWh-dgrLwvldsgtGev~~vD~~~G~~e~Va~vpG~~r-GL~f~--G~llvVgmSk  261 (335)
T TIGR03032       196 EVVASG-LSMPHSPRWY-QGKLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTR-GLAFA--GDFAFVGLSK  261 (335)
T ss_pred             CEEEcC-ccCCcCCcEe-CCeEEEEECCCCEEEEEcCCCCcEEEEEECCCCCc-cccee--CCEEEEEecc
Confidence            456677 8899999996 89999999 78999999986 99988888889999 99998  8886776533

This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.82  E-value=0.0038  Score=48.08  Aligned_cols=102  Identities=17%  Similarity=0.293  Sum_probs=66.5

Q ss_pred             CcceEEEcCCCCEEEEc-CC------CeEEEEcCCCcEEE-e--ccc-------------cCccccceEEccCCcEEEEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GD------GWIKRMHPNGTWED-W--HQV-------------GSQSLLGLTTTKENNVIIVC   67 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~------~~i~~~~~~g~~~~-~--~~~-------------~~~p~~gl~~~~~g~l~~v~   67 (173)
                      -+|+|++.++|.+|+++ ..      ..|++++.+|+... +  ...             -.... +|+++++|+.||++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E-~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFE-GLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeE-EEEECCCCCEEEEE
Confidence            69999997799999998 66      78999998887532 2  111             12367 99999999954766


Q ss_pred             eCCC----------------eEEEEcc-C-C--cEEEEeccCC----ccccCCccEEEcCCCcEEEEeCc
Q 030700           68 DSQQ----------------GLLKVSE-E-G--VTVLVSQFNG----SQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        68 ~~~~----------------~i~~~~~-~-g--~~~~~~~~~~----~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      ....                +++.++. + +  ...+.=..+.    .....+.+++.-++|+++|-+-.
T Consensus       165 ~E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~  234 (326)
T PF13449_consen  165 MESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERD  234 (326)
T ss_pred             ECccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEcc
Confidence            4221                2444553 2 3  2322211111    02357788999999999998754

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.79  E-value=0.0054  Score=45.94  Aligned_cols=146  Identities=16%  Similarity=0.147  Sum_probs=83.1

Q ss_pred             ccCCcceEEEcCCCCEEEEc-CCCeEEE--EcCCCcEEEecc---------c-cCccccceEEccCCcEEEEEeCCC--e
Q 030700            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKR--MHPNGTWEDWHQ---------V-GSQSLLGLTTTKENNVIIVCDSQQ--G   72 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~--~~~~g~~~~~~~---------~-~~~p~~gl~~~~~g~l~~v~~~~~--~   72 (173)
                      .+..||++++-.+|...+++ .+..++.  +++++.......         . -..-. |+++++..+.||++-..+  +
T Consensus       127 g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfE-GlA~d~~~~~l~~aKEr~P~~  205 (316)
T COG3204         127 GFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFE-GLAWDPVDHRLFVAKERNPIG  205 (316)
T ss_pred             ccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCce-eeecCCCCceEEEEEccCCcE
Confidence            37889999998777666777 6666665  456654332211         1 11346 999999776658876553  6


Q ss_pred             EEEEcc--CC-cEEEEecc-CCc--cccCCccEEEcC-CCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           73 LLKVSE--EG-VTVLVSQF-NGS--QLRFANDVIEAS-DGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        73 i~~~~~--~g-~~~~~~~~-~~~--~~~~~~~l~~~~-dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      |+.++.  +. ........ ...  -..-..++.+++ .++++| ++                  .++.|..+|.++.-+
T Consensus       206 I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~------------------ESr~l~Evd~~G~~~  267 (316)
T COG3204         206 IFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSD------------------ESRRLLEVDLSGEVI  267 (316)
T ss_pred             EEEEecCCcccccccccCcccccceEeeccccceecCCCCcEEEEec------------------CCceEEEEecCCCee
Confidence            777662  23 11111111 110  123456677776 455555 33                  235667777663222


Q ss_pred             EEe---------eccccCcceEEEccCCCEEEEEecC
Q 030700          145 SLV---------LDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       145 ~~~---------~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ..+         ....+.+.||+.+++|....|+|.+
T Consensus       268 ~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIvSEPn  304 (316)
T COG3204         268 ELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIVSEPN  304 (316)
T ss_pred             eeEEeccCCCCCcccCCCcceeEECCCCCEEEEecCC
Confidence            222         1235778999999999744445543

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.76  E-value=0.00019  Score=56.33  Aligned_cols=139  Identities=14%  Similarity=0.200  Sum_probs=86.3

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC----c
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG----V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g----~   81 (173)
                      .-|.++-+.|++ ++|++. .+++|..||. .|+++ .+....+..+ .|.|-++|+. +++.....-++++..+    .
T Consensus       300 ~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~-~i~F~~~g~r-FissSDdks~riWe~~~~v~i  377 (503)
T KOG0282|consen  300 KVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAIL-DITFVDEGRR-FISSSDDKSVRIWENRIPVPI  377 (503)
T ss_pred             CCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhhee-eeEEccCCce-EeeeccCccEEEEEcCCCccc
Confidence            347889999976 888666 8899999984 55543 2334455566 8999999999 7776666667776544    2


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC---eeEEeecc---ccCcc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN---QTSLVLDG---LYFAN  155 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~~---~~~p~  155 (173)
                      ..+...    ....--.++.+|+|..+++-.                 .++.++.|...-.   .......+   ...+.
T Consensus       378 k~i~~~----~~hsmP~~~~~P~~~~~~aQs-----------------~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~  436 (503)
T KOG0282|consen  378 KNIADP----EMHTMPCLTLHPNGKWFAAQS-----------------MDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSC  436 (503)
T ss_pred             hhhcch----hhccCcceecCCCCCeehhhc-----------------cCceEEEEecccccccCHhhhhcceeccCcee
Confidence            222211    123345588899988777632                 2345555543211   01111112   34566


Q ss_pred             eEEEccCCCEEEEEec
Q 030700          156 GVALSEDERFLVVCES  171 (173)
Q Consensus       156 gi~~~~dg~~lyv~~~  171 (173)
                      .+.|||||++|.-.++
T Consensus       437 ~v~fSpDG~~l~SGds  452 (503)
T KOG0282|consen  437 QVDFSPDGRTLCSGDS  452 (503)
T ss_pred             eEEEcCCCCeEEeecC
Confidence            8999999998876554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.76  E-value=0.00061  Score=56.92  Aligned_cols=136  Identities=15%  Similarity=0.143  Sum_probs=86.7

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEe
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~   86 (173)
                      ..||+.|.-+++.++. .+|-+..|+..++... -......+. ++..+....++.++.....|..+|. .-  ++.+..
T Consensus       496 V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~-~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~g  574 (910)
T KOG1539|consen  496 VTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLGSSIT-GIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWG  574 (910)
T ss_pred             eeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccCCCcc-eeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhc
Confidence            5689999866666655 7777777876555422 122333455 7777766555344444446777774 22  333322


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEE
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~l  166 (173)
                      ..     +..++++++|||+..++.                 ..+++|..||..++...-...--..+..+.|||.|++|
T Consensus       575 h~-----nritd~~FS~DgrWlisa-----------------smD~tIr~wDlpt~~lID~~~vd~~~~sls~SPngD~L  632 (910)
T KOG1539|consen  575 HG-----NRITDMTFSPDGRWLISA-----------------SMDSTIRTWDLPTGTLIDGLLVDSPCTSLSFSPNGDFL  632 (910)
T ss_pred             cc-----cceeeeEeCCCCcEEEEe-----------------ecCCcEEEEeccCcceeeeEecCCcceeeEECCCCCEE
Confidence            11     578999999999977763                 23478999998877654333333445689999999988


Q ss_pred             EEEe
Q 030700          167 VVCE  170 (173)
Q Consensus       167 yv~~  170 (173)
                      ..+.
T Consensus       633 AT~H  636 (910)
T KOG1539|consen  633 ATVH  636 (910)
T ss_pred             EEEE
Confidence            7654

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=97.75  E-value=0.0015  Score=50.78  Aligned_cols=139  Identities=14%  Similarity=0.085  Sum_probs=86.6

Q ss_pred             cCCcceEEEcCCCCEEEEcC-C--CeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEE
Q 030700            9 VNHPEDVSVDGNGVLYTATG-D--GWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTV   83 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~-~--~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~   83 (173)
                      -.+..+++|.++|.|..+.. +  ++|+=+ -+|+..- +........ ++.|+|+|.. +.+...++..++++ -....
T Consensus       303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDl-Rtgr~im~L~gH~k~I~-~V~fsPNGy~-lATgs~Dnt~kVWDLR~r~~  379 (459)
T KOG0272|consen  303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDL-RTGRCIMFLAGHIKEIL-SVAFSPNGYH-LATGSSDNTCKVWDLRMRSE  379 (459)
T ss_pred             ccccceeEecCCCceeeccCccchhheeec-ccCcEEEEeccccccee-eEeECCCceE-EeecCCCCcEEEeeeccccc
Confidence            35567899999999998773 2  343333 3565443 333445566 9999999988 66666666666654 33222


Q ss_pred             EEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~  161 (173)
                      +......  -+-...+.++| -|.+.+|...                 ++.+-.+...+..+.... ..-.-.-++.+++
T Consensus       380 ly~ipAH--~nlVS~Vk~~p~~g~fL~Tasy-----------------D~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~  440 (459)
T KOG0272|consen  380 LYTIPAH--SNLVSQVKYSPQEGYFLVTASY-----------------DNTVKIWSTRTWSPLKSLAGHEGKVISLDISP  440 (459)
T ss_pred             ceecccc--cchhhheEecccCCeEEEEccc-----------------CcceeeecCCCcccchhhcCCccceEEEEecc
Confidence            2222111  14567899998 5667777532                 356777777766654443 3345556788899


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      |++.+..+
T Consensus       441 d~~~i~t~  448 (459)
T KOG0272|consen  441 DSQAIATS  448 (459)
T ss_pred             CCceEEEe
Confidence            98865443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.68  E-value=0.0026  Score=48.12  Aligned_cols=108  Identities=18%  Similarity=0.170  Sum_probs=69.5

Q ss_pred             cCccccceEEccC-CcEEEEEeCC-CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccce
Q 030700           48 GSQSLLGLTTTKE-NNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYY  122 (173)
Q Consensus        48 ~~~p~~gl~~~~~-g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~  122 (173)
                      +...+ +++.+|. +..++++-.- .-.+++|. +| ........++.-  ..=.-++++||+ +|.|++..        
T Consensus         4 P~RgH-~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRH--FyGHg~fs~dG~~LytTEnd~--------   72 (305)
T PF07433_consen    4 PARGH-GVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRH--FYGHGVFSPDGRLLYTTENDY--------   72 (305)
T ss_pred             Ccccc-ceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCE--EecCEEEcCCCCEEEEecccc--------
Confidence            45678 8999984 4553444332 34677775 56 333333333332  233578899997 67776542        


Q ss_pred             eeecccCCCceEEEEcCCCC--eeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          123 LDLVSGEPHGVLLKYDPSTN--QTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       123 ~~~~~~~~~~~v~~~d~~~~--~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                           ....|.|-.||...+  ++..+....-.|..|.+.|||++|.|++-
T Consensus        73 -----~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANG  118 (305)
T PF07433_consen   73 -----ETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANG  118 (305)
T ss_pred             -----CCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcC
Confidence                 234588999998732  34445556678999999999999999874

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=97.68  E-value=0.0018  Score=55.40  Aligned_cols=142  Identities=13%  Similarity=0.179  Sum_probs=77.9

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-----------C---cEEEe------ccccCccccceEEccCCcEEEEEe
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-----------G---TWEDW------HQVGSQSLLGLTTTKENNVIIVCD   68 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-----------g---~~~~~------~~~~~~p~~gl~~~~~g~l~~v~~   68 (173)
                      ..-.++.|.+||..+++. .+.-|+.|...           |   ..+.|      ....+... .++++|++.+|.-+.
T Consensus        70 ~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~-Dv~Wsp~~~~lvS~s  148 (942)
T KOG0973|consen   70 GSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVL-DVNWSPDDSLLVSVS  148 (942)
T ss_pred             CceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccc-eeccCCCccEEEEec
Confidence            445678899999655444 55545555422           1   01111      12233456 788999999844343


Q ss_pred             CCCeEEEEccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           69 SQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        69 ~~~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      ..+.|+..+..-++.+ ....+. ...+-++.+||-|+.+.+-.                 .+.+|..+....-.++...
T Consensus       149 ~DnsViiwn~~tF~~~-~vl~~H-~s~VKGvs~DP~Gky~ASqs-----------------dDrtikvwrt~dw~i~k~I  209 (942)
T KOG0973|consen  149 LDNSVIIWNAKTFELL-KVLRGH-QSLVKGVSWDPIGKYFASQS-----------------DDRTLKVWRTSDWGIEKSI  209 (942)
T ss_pred             ccceEEEEccccceee-eeeecc-cccccceEECCccCeeeeec-----------------CCceEEEEEcccceeeEee
Confidence            3455666664322211 111221 14678999999998777732                 2344444443222333333


Q ss_pred             c-ccc------CcceEEEccCCCEEEEEec
Q 030700          149 D-GLY------FANGVALSEDERFLVVCES  171 (173)
Q Consensus       149 ~-~~~------~p~gi~~~~dg~~lyv~~~  171 (173)
                      . .+.      .-.-+.|||||++|.+.+.
T Consensus       210 t~pf~~~~~~T~f~RlSWSPDG~~las~nA  239 (942)
T KOG0973|consen  210 TKPFEESPLTTFFLRLSWSPDGHHLASPNA  239 (942)
T ss_pred             ccchhhCCCcceeeecccCCCcCeecchhh
Confidence            2 222      1235889999999877654

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=97.66  E-value=0.0076  Score=45.05  Aligned_cols=132  Identities=12%  Similarity=0.086  Sum_probs=86.7

Q ss_pred             CcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc---cCC-cE
Q 030700           11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS---EEG-VT   82 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~---~~g-~~   82 (173)
                      -.-+|.+.| +++.|++. .+...+.||. ++. .+.+.......+ .+.|.|+|.- +++...++.-++.   .+- +.
T Consensus       188 DV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDIN-sv~ffP~G~a-fatGSDD~tcRlyDlRaD~~~a  265 (343)
T KOG0286|consen  188 DVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDIN-SVRFFPSGDA-FATGSDDATCRLYDLRADQELA  265 (343)
T ss_pred             cEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccccc-eEEEccCCCe-eeecCCCceeEEEeecCCcEEe
Confidence            345677778 88999877 5666666763 444 556655666778 9999999988 8777666544443   343 44


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~p~gi~~~~  161 (173)
                      .+...   ......+.++++..|++.++-+                 .+..+..+|.-.++ +..+.........+.++|
T Consensus       266 ~ys~~---~~~~gitSv~FS~SGRlLfagy-----------------~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~  325 (343)
T KOG0286|consen  266 VYSHD---SIICGITSVAFSKSGRLLFAGY-----------------DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSP  325 (343)
T ss_pred             eeccC---cccCCceeEEEcccccEEEeee-----------------cCCceeEeeccccceEEEeeccCCeeEEEEECC
Confidence            44321   1123568899999999887732                 23467777754344 333444467778899999


Q ss_pred             CCC
Q 030700          162 DER  164 (173)
Q Consensus       162 dg~  164 (173)
                      ||.
T Consensus       326 DG~  328 (343)
T KOG0286|consen  326 DGM  328 (343)
T ss_pred             CCc
Confidence            995

>PTZ00420 coronin; Provisional

Probab=97.65  E-value=0.015  Score=48.17  Aligned_cols=114  Identities=8%  Similarity=-0.005  Sum_probs=68.9

Q ss_pred             CCcceEEEcCC-CCEEEEc-CCCeEEEEcC-CCc--E-------EEeccccCccccceEEccCCcEEEEEeCCCeEEEE-
Q 030700           10 NHPEDVSVDGN-GVLYTAT-GDGWIKRMHP-NGT--W-------EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-   76 (173)
Q Consensus        10 ~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~-~g~--~-------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-   76 (173)
                      ....+++|+|+ +.++++. .++.|..|+. ++.  .       ..+........ .++|+|++..++++...++.+++ 
T Consensus        75 ~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~-sVaf~P~g~~iLaSgS~DgtIrIW  153 (568)
T PTZ00420         75 SSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS-IIDWNPMNYYIMCSSGFDSFVNIW  153 (568)
T ss_pred             CCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE-EEEECCCCCeEEEEEeCCCeEEEE
Confidence            44678999995 6666554 7888888884 221  1       11222334566 89999988763444444444444 


Q ss_pred             cc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           77 SE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        77 ~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      |. .+.....-.. .   .....++++++|.++++..                 .++.|..||+.+++..
T Consensus       154 Dl~tg~~~~~i~~-~---~~V~SlswspdG~lLat~s-----------------~D~~IrIwD~Rsg~~i  202 (568)
T PTZ00420        154 DIENEKRAFQINM-P---KKLSSLKWNIKGNLLSGTC-----------------VGKHMHIIDPRKQEIA  202 (568)
T ss_pred             ECCCCcEEEEEec-C---CcEEEEEECCCCCEEEEEe-----------------cCCEEEEEECCCCcEE
Confidence            43 4421111111 1   2467899999999877632                 3468888999877653

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=97.60  E-value=0.0057  Score=45.36  Aligned_cols=135  Identities=14%  Similarity=0.135  Sum_probs=87.5

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-Cc-EEEeccccCccccceEEccCCcEEEEEeCCCe-EEEEccCC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~~g--~~~   83 (173)
                      ...++++..++|...++. .++.+..||.. |+ ...+..+..... +++|++|.+. .++..-+. +...+.-|  .-+
T Consensus        64 H~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVl-sva~s~dn~q-ivSGSrDkTiklwnt~g~ck~t  141 (315)
T KOG0279|consen   64 HFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVL-SVAFSTDNRQ-IVSGSRDKTIKLWNTLGVCKYT  141 (315)
T ss_pred             eEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceE-EEEecCCCce-eecCCCcceeeeeeecccEEEE
Confidence            446678888999888776 78888888864 43 334545555677 9999999888 66655544 44444444  333


Q ss_pred             EEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~  161 (173)
                      ......   -.+.+.+.++|+- +.++...                ..++.|-.+|.++-+++....+ -...|-+++||
T Consensus       142 ~~~~~~---~~WVscvrfsP~~~~p~Ivs~----------------s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSp  202 (315)
T KOG0279|consen  142 IHEDSH---REWVSCVRFSPNESNPIIVSA----------------SWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSP  202 (315)
T ss_pred             EecCCC---cCcEEEEEEcCCCCCcEEEEc----------------cCCceEEEEccCCcchhhccccccccEEEEEECC
Confidence            333221   2578889999975 4444432                2457888888876554433332 45567899999


Q ss_pred             CCCE
Q 030700          162 DERF  165 (173)
Q Consensus       162 dg~~  165 (173)
                      ||..
T Consensus       203 DGsl  206 (315)
T KOG0279|consen  203 DGSL  206 (315)
T ss_pred             CCCE
Confidence            9863

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=97.59  E-value=0.0061  Score=47.42  Aligned_cols=132  Identities=11%  Similarity=0.011  Sum_probs=83.9

Q ss_pred             CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEeccCCccccCC
Q 030700           21 GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFA   96 (173)
Q Consensus        21 g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~   96 (173)
                      ...++++ .+.+|..||. .+......+.++... .+.++.+|.-+..|...+.+-.+|--+  +.....-..-+...-.
T Consensus       312 ~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vt-Sl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDw  390 (459)
T KOG0288|consen  312 ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVT-SLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDW  390 (459)
T ss_pred             ceeeeecccccceEEEeccCCceeeEeecCccee-eEeeccCCeEEeeecCCCceeeeecccccEEEEeecccccccccc
Confidence            4555666 6677888883 445554445566677 888888887756664444444455322  3222221111112336


Q ss_pred             ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc---CcceEEEccCCCEEEEEe
Q 030700           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY---FANGVALSEDERFLVVCE  170 (173)
Q Consensus        97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~p~gi~~~~dg~~lyv~~  170 (173)
                      +.+.|+|+|.+..+                 ++.+|+|+.++..+++++.+.....   ..+.++|+|-|..|.-++
T Consensus       391 trvvfSpd~~YvaA-----------------GS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsad  450 (459)
T KOG0288|consen  391 TRVVFSPDGSYVAA-----------------GSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSAD  450 (459)
T ss_pred             ceeEECCCCceeee-----------------ccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhccc
Confidence            77899999875554                 3466899999999999888876532   357899999888776554

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=97.59  E-value=0.0042  Score=46.97  Aligned_cols=143  Identities=13%  Similarity=0.102  Sum_probs=77.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC------cEEEeccccCccccceEEccCCcEEEEEe-CCCe--EEEEc--
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG------TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQG--LLKVS--   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g------~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~~--i~~~~--   77 (173)
                      ....+++|.++|.-+++. .++.|..|+.+.      +..+..-+.+.|. -++|.||-+-++|+. .++.  ++.++  
T Consensus        87 ~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT-~V~FapDc~s~vv~~~~g~~l~vyk~~K~  165 (420)
T KOG2096|consen   87 KEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPT-RVVFAPDCKSVVVSVKRGNKLCVYKLVKK  165 (420)
T ss_pred             CceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCce-EEEECCCcceEEEEEccCCEEEEEEeeec
Confidence            456789999999877666 667677776432      1222233456888 999999876644443 3443  34343  


Q ss_pred             cCC-cEEEEeccC---CccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc
Q 030700           78 EEG-VTVLVSQFN---GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY  152 (173)
Q Consensus        78 ~~g-~~~~~~~~~---~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  152 (173)
                      .+| ........+   -...+...-+.+.- ++..|+.                ..+.+..|..|+..+..+..+..+-.
T Consensus       166 ~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~im----------------sas~dt~i~lw~lkGq~L~~idtnq~  229 (420)
T KOG2096|consen  166 TDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIM----------------SASLDTKICLWDLKGQLLQSIDTNQS  229 (420)
T ss_pred             ccCCCCcccccccccccchhcccceEEEeecCCceEEE----------------EecCCCcEEEEecCCceeeeeccccc
Confidence            255 111111111   11112222222221 2233333                23344688888887333444444444


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      .-.-.++||+||++.++
T Consensus       230 ~n~~aavSP~GRFia~~  246 (420)
T KOG2096|consen  230 SNYDAAVSPDGRFIAVS  246 (420)
T ss_pred             cccceeeCCCCcEEEEe
Confidence            44567899999988775

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=97.59  E-value=0.00093  Score=55.25  Aligned_cols=105  Identities=14%  Similarity=0.193  Sum_probs=71.2

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      +++..|-+.--.++.|+|+....++. .+..+.-|| ..|..++ +..+-+... .++++|+|++ .++....+++.+++
T Consensus       528 lRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~-al~~Sp~Gr~-LaSg~ed~~I~iWD  605 (707)
T KOG0263|consen  528 LRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVT-ALAFSPCGRY-LASGDEDGLIKIWD  605 (707)
T ss_pred             hhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceE-EEEEcCCCce-EeecccCCcEEEEE
Confidence            34566667788899999998766665 667777888 4666554 433334455 9999999998 55555555555553


Q ss_pred             --CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           79 --EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        79 --~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                        .|  +..+... .    ...+.|.++.||.++++.+.
T Consensus       606 l~~~~~v~~l~~H-t----~ti~SlsFS~dg~vLasgg~  639 (707)
T KOG0263|consen  606 LANGSLVKQLKGH-T----GTIYSLSFSRDGNVLASGGA  639 (707)
T ss_pred             cCCCcchhhhhcc-c----CceeEEEEecCCCEEEecCC
Confidence              44  3333222 1    45688999999999998654

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.57  E-value=0.0069  Score=45.32  Aligned_cols=95  Identities=14%  Similarity=0.249  Sum_probs=56.1

Q ss_pred             EcCCC-CEEEEcC-----CCeEEEEcCCCcEEE---eccccCccccceEEccCCcEEEEEeCC---C-------------
Q 030700           17 VDGNG-VLYTATG-----DGWIKRMHPNGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQ---Q-------------   71 (173)
Q Consensus        17 ~~~~g-~l~~~~~-----~~~i~~~~~~g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~---~-------------   71 (173)
                      ++++| .||.+.+     .|-|-.||...+..+   |...+-.|+ -+.+.+||+++++++.+   +             
T Consensus       121 fs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpH-ev~lm~DGrtlvvanGGIethpdfgR~~lNldsM  199 (366)
T COG3490         121 FSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPH-EVTLMADGRTLVVANGGIETHPDFGRTELNLDSM  199 (366)
T ss_pred             cCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcc-eeEEecCCcEEEEeCCceecccccCccccchhhc
Confidence            45666 3555542     244555654433333   333445789 99999999998888752   1             


Q ss_pred             --eEEEEc-cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           72 --GLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        72 --~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                        .++.++ .+|  +++.. ........+...+++++||++|+.+..
T Consensus       200 ePSlvlld~atG~liekh~-Lp~~l~~lSiRHld~g~dgtvwfgcQy  245 (366)
T COG3490         200 EPSLVLLDAATGNLIEKHT-LPASLRQLSIRHLDIGRDGTVWFGCQY  245 (366)
T ss_pred             CccEEEEeccccchhhhcc-CchhhhhcceeeeeeCCCCcEEEEEEe
Confidence              244445 355  22211 111223457788999999999998743

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=97.55  E-value=0.01  Score=43.51  Aligned_cols=105  Identities=16%  Similarity=0.167  Sum_probs=63.5

Q ss_pred             CCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-----EEE---eccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030700            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-----WED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV   76 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-----~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~   76 (173)
                      +........++++|+|...++. ..|..|.|+.-++     ++.   +....+... -+.++||+++|..|.....+...
T Consensus       164 Pe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il-~C~lSPd~k~lat~ssdktv~iw  242 (311)
T KOG0315|consen  164 PEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHIL-RCLLSPDVKYLATCSSDKTVKIW  242 (311)
T ss_pred             CCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEE-EEEECCCCcEEEeecCCceEEEE
Confidence            3334567789999999877666 7889999984331     221   222333455 67789999995555444444444


Q ss_pred             ccCCcEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030700           77 SEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        77 ~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ..++.-.+.....+.. .+.=+.+|+.||+.+||-.
T Consensus       243 n~~~~~kle~~l~gh~-rWvWdc~FS~dg~YlvTas  277 (311)
T KOG0315|consen  243 NTDDFFKLELVLTGHQ-RWVWDCAFSADGEYLVTAS  277 (311)
T ss_pred             ecCCceeeEEEeecCC-ceEEeeeeccCccEEEecC
Confidence            4555211111122211 4677889999999888743

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=97.55  E-value=0.003  Score=48.92  Aligned_cols=93  Identities=10%  Similarity=0.059  Sum_probs=56.6

Q ss_pred             eEEEcCC-CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEecc
Q 030700           14 DVSVDGN-GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQF   88 (173)
Q Consensus        14 ~l~~~~~-g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~   88 (173)
                      -++|+|. .++.++. .+..|..|+. +|....-........ .+.|+.||.++..+.....|..+|+ .| +..-....
T Consensus       136 ~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~-S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~h  214 (472)
T KOG0303|consen  136 LVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVY-SMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAH  214 (472)
T ss_pred             EEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEE-EEEeccCCceeeeecccceeEEEcCCCCcEeeecccc
Confidence            3677773 3444433 6778888884 565443334666778 8999999998444444555666675 55 33222233


Q ss_pred             CCccccCCccEEEcCCCcEEEE
Q 030700           89 NGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        89 ~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      .|   ..|-...+-.+|.++.|
T Consensus       215 eG---~k~~Raifl~~g~i~tT  233 (472)
T KOG0303|consen  215 EG---AKPARAIFLASGKIFTT  233 (472)
T ss_pred             cC---CCcceeEEeccCceeee
Confidence            33   45666777778885555

>PTZ00421 coronin; Provisional

Probab=97.55  E-value=0.016  Score=47.25  Aligned_cols=141  Identities=12%  Similarity=0.079  Sum_probs=75.9

Q ss_pred             CcceEEEcCCC-CEEEE-cCCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           11 HPEDVSVDGNG-VLYTA-TGDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        11 ~p~~l~~~~~g-~l~~~-~~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      ...+++|+|++ .++++ ..++.|..||.. ++.. .+........ .++|+++|++++.+.....+..+|. ++  ...
T Consensus       127 ~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~-sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~t  205 (493)
T PTZ00421        127 KVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQIT-SLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSS  205 (493)
T ss_pred             cEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceE-EEEEECCCCEEEEecCCCEEEEEECCCCcEEEE
Confidence            45678999964 55554 478889999854 4433 2323344566 9999999998444433334444553 45  222


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeec--cccCcceEEEc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLD--GLYFANGVALS  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~--~~~~p~gi~~~  160 (173)
                      +.. ..+   .....+.+.+++..+++....             ...++.|..||..+.. +.....  ......-..|+
T Consensus       206 l~~-H~~---~~~~~~~w~~~~~~ivt~G~s-------------~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d  268 (493)
T PTZ00421        206 VEA-HAS---AKSQRCLWAKRKDLIITLGCS-------------KSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFD  268 (493)
T ss_pred             Eec-CCC---CcceEEEEcCCCCeEEEEecC-------------CCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEc
Confidence            211 111   122345667776655553210             1234678888876432 111111  11112224578


Q ss_pred             cCCCEEEEE
Q 030700          161 EDERFLVVC  169 (173)
Q Consensus       161 ~dg~~lyv~  169 (173)
                      +|++.||++
T Consensus       269 ~d~~~L~lg  277 (493)
T PTZ00421        269 EDTNLLYIG  277 (493)
T ss_pred             CCCCEEEEE
Confidence            888888775

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=97.54  E-value=0.0018  Score=48.93  Aligned_cols=99  Identities=18%  Similarity=0.282  Sum_probs=62.1

Q ss_pred             CcceEEEcC---CC-CEEEEc-CCCeEEEEcC----CCc----------EEEeccccCccccceEEccCCcEEEEEeCC-
Q 030700           11 HPEDVSVDG---NG-VLYTAT-GDGWIKRMHP----NGT----------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-   70 (173)
Q Consensus        11 ~p~~l~~~~---~g-~l~~~~-~~~~i~~~~~----~g~----------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-   70 (173)
                      +..|++..|   +| .||+.. ...++|++..    +..          .+.+...+.... |+++|++|.+ |+++.. 
T Consensus       129 g~~gial~~~~~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k~~~s~-g~~~D~~G~l-y~~~~~~  206 (287)
T PF03022_consen  129 GIFGIALSPISPDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDLGDKGSQSD-GMAIDPNGNL-YFTDVEQ  206 (287)
T ss_dssp             SEEEEEE-TTSTTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE---SEC-EEEEETTTEE-EEEECCC
T ss_pred             CccccccCCCCCCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceeccccCCCCc-eEEECCCCcE-EEecCCC
Confidence            356777766   44 699888 5567898851    221          122222234567 9999999999 988876 


Q ss_pred             CeEEEEccCC------cEEEEeccCCccccCCccEEEcC--CCcEEEEeCc
Q 030700           71 QGLLKVSEEG------VTVLVSQFNGSQLRFANDVIEAS--DGSLYFTVSS  113 (173)
Q Consensus        71 ~~i~~~~~~g------~~~~~~~~~~~~~~~~~~l~~~~--dG~~~v~~~~  113 (173)
                      +.|.++++++      .+.++.  +...+.+|+++.+++  +|.+|+..+.
T Consensus       207 ~aI~~w~~~~~~~~~~~~~l~~--d~~~l~~pd~~~i~~~~~g~L~v~snr  255 (287)
T PF03022_consen  207 NAIGCWDPDGPYTPENFEILAQ--DPRTLQWPDGLKIDPEGDGYLWVLSNR  255 (287)
T ss_dssp             TEEEEEETTTSB-GCCEEEEEE---CC-GSSEEEEEE-T--TS-EEEEE-S
T ss_pred             CeEEEEeCCCCcCccchheeEE--cCceeeccceeeeccccCceEEEEECc
Confidence            5788888755      233332  223368999999999  9999998644

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>COG2133 Glucose/sorbosone dehydrogenases [Carbohydrate transport and metabolism]

Probab=97.54  E-value=0.0024  Score=50.17  Aligned_cols=119  Identities=17%  Similarity=0.217  Sum_probs=71.4

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEcCCC-eE--------------E----EE---cCCCc------EEE-e------cc
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTATGDG-WI--------------K----RM---HPNGT------WED-W------HQ   46 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~~~~-~i--------------~----~~---~~~g~------~~~-~------~~   46 (173)
                      .+.-| +-+|.|++|+| +|.||++++.. .+              |    ++   +.+++      ... .      ..
T Consensus       233 i~s~G-~RN~qGl~w~P~tg~Lw~~e~g~d~~~~~Deln~i~~G~nYGWP~~~~G~~~~g~~~~~~~~~~~~~~p~~~~~  311 (399)
T COG2133         233 IWSYG-HRNPQGLAWHPVTGALWTTEHGPDALRGPDELNSIRPGKNYGWPYAYFGQNYDGRAIPDGTVVAGAIQPVYTWA  311 (399)
T ss_pred             eEEec-cCCccceeecCCCCcEEEEecCCCcccCcccccccccCCccCCceeccCcccCccccCCCcccccccCCceeec
Confidence            44555 67899999999 59999998322 11              0    11   01111      000 0      01


Q ss_pred             ccCccccceEEccC-------CcEEEEEeCCCe-EEEEccCC-cEEEEe-ccCCccccCCccEEEcCCCcEEEEeCcCCc
Q 030700           47 VGSQSLLGLTTTKE-------NNVIIVCDSQQG-LLKVSEEG-VTVLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKF  116 (173)
Q Consensus        47 ~~~~p~~gl~~~~~-------g~l~~v~~~~~~-i~~~~~~g-~~~~~~-~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~  116 (173)
                      ..-.|. ||+|-..       +.+ +|+..++. +++.+.+| .+.+.. .+.+....+|.++++.+||.+|+++..   
T Consensus       312 ~h~Aps-GmaFy~G~~fP~~r~~l-fV~~hgsw~~~~~~~~g~~~~~~~~fl~~d~~gR~~dV~v~~DGallv~~D~---  386 (399)
T COG2133         312 PHIAPS-GMAFYTGDLFPAYRGDL-FVGAHGSWPVLRLRPDGNYKVVLTGFLSGDLGGRPRDVAVAPDGALLVLTDQ---  386 (399)
T ss_pred             cccccc-eeEEecCCcCccccCcE-EEEeecceeEEEeccCCCcceEEEEEEecCCCCcccceEECCCCeEEEeecC---
Confidence            112367 9999632       567 88776654 66666666 232222 122111268999999999999998743   


Q ss_pred             CcccceeeecccCCCceEEEEcCC
Q 030700          117 TPAEYYLDLVSGEPHGVLLKYDPS  140 (173)
Q Consensus       117 ~~~~~~~~~~~~~~~~~v~~~d~~  140 (173)
                                   .+++|+|+..+
T Consensus       387 -------------~~g~i~Rv~~~  397 (399)
T COG2133         387 -------------GDGRILRVSYA  397 (399)
T ss_pred             -------------CCCeEEEecCC
Confidence                         35799999765

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.53  E-value=0.0051  Score=48.19  Aligned_cols=136  Identities=9%  Similarity=0.085  Sum_probs=84.8

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCC-C-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC-cEEEE
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG-VTVLV   85 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g-~~~~~   85 (173)
                      -.+.+++|||.||.+. .++.+-.||.. + ....|..+.+... .|.|+.+|.+|.++.....+..+|-  .- +..+.
T Consensus       350 ~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk-~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~  428 (506)
T KOG0289|consen  350 YTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVK-AISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ  428 (506)
T ss_pred             eEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCcee-EEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence            4578899999999777 77777777743 2 4556655555566 9999999987444443334665552  22 44432


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe---eccccCcceEEEccC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVALSED  162 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~p~gi~~~~d  162 (173)
                      .. +.   ...+.+.+|..|...+.-.                 .+-.||.++..+.+-..+   .......+++.|...
T Consensus       429 l~-~~---~~v~s~~fD~SGt~L~~~g-----------------~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~  487 (506)
T KOG0289|consen  429 LD-EK---KEVNSLSFDQSGTYLGIAG-----------------SDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEH  487 (506)
T ss_pred             cc-cc---ccceeEEEcCCCCeEEeec-----------------ceeEEEEEecccccceeeehhhhcccccceeeeccc
Confidence            21 11   2478899999997655421                 224788887655432222   222346789999877


Q ss_pred             CCEEEEE
Q 030700          163 ERFLVVC  169 (173)
Q Consensus       163 g~~lyv~  169 (173)
                      .+++..+
T Consensus       488 aq~l~s~  494 (506)
T KOG0289|consen  488 AQYLAST  494 (506)
T ss_pred             ceEEeec
Confidence            6655444

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.52  E-value=0.0024  Score=49.78  Aligned_cols=136  Identities=11%  Similarity=0.077  Sum_probs=82.0

Q ss_pred             CCcceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccc--cCccccceEEccCCcEEEEEeCCC-eEEEEccCC--cE
Q 030700           10 NHPEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--VT   82 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g--~~   82 (173)
                      +....+.|+||. .|..+..+..+..||. +|......+.  +..+. ..++.|||.- +|+.... .++..+.||  ..
T Consensus       270 ~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~-sc~W~pDg~~-~V~Gs~dr~i~~wdlDgn~~~  347 (519)
T KOG0293|consen  270 QPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVS-SCAWCPDGFR-FVTGSPDRTIIMWDLDGNILG  347 (519)
T ss_pred             CceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcc-eeEEccCCce-eEecCCCCcEEEecCCcchhh
Confidence            345568899965 5555556666788885 4544332222  34566 8899999988 7776554 466667787  33


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .+.    +.......+|++.+||. ++..+.                  +..+..|+.++..-+.+...-.....+++|.
T Consensus       348 ~W~----gvr~~~v~dlait~Dgk~vl~v~~------------------d~~i~l~~~e~~~dr~lise~~~its~~iS~  405 (519)
T KOG0293|consen  348 NWE----GVRDPKVHDLAITYDGKYVLLVTV------------------DKKIRLYNREARVDRGLISEEQPITSFSISK  405 (519)
T ss_pred             ccc----ccccceeEEEEEcCCCcEEEEEec------------------ccceeeechhhhhhhccccccCceeEEEEcC
Confidence            322    22224678999999997 444432                  2355556655332222333334456788888


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      |++++.|+
T Consensus       406 d~k~~Lvn  413 (519)
T KOG0293|consen  406 DGKLALVN  413 (519)
T ss_pred             CCcEEEEE
Confidence            88866654

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=97.50  E-value=0.019  Score=41.63  Aligned_cols=108  Identities=22%  Similarity=0.273  Sum_probs=63.2

Q ss_pred             EEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEE-Ee-ccCC
Q 030700           16 SVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVL-VS-QFNG   90 (173)
Q Consensus        16 ~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~-~~-~~~~   90 (173)
                      ++..++.+|+++.++.|+++|. +|+..--........ ......++++ |++.....++.++ .+| ...- .. ..+.
T Consensus        32 ~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~-~~~~~~~~~v-~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~  109 (238)
T PF13360_consen   32 AVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPIS-GAPVVDGGRV-YVGTSDGSLYALDAKTGKVLWSIYLTSSPP  109 (238)
T ss_dssp             EEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGG-SGEEEETTEE-EEEETTSEEEEEETTTSCEEEEEEE-SSCT
T ss_pred             EEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccc-ceeeeccccc-ccccceeeeEecccCCcceeeeeccccccc
Confidence            4545889999988899999996 776432222222222 2223355566 7776556799999 588 3322 11 1111


Q ss_pred             ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        91 ~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      .....+....++ ++.+|+...                  ++.|+.+|+++|+.
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~------------------~g~l~~~d~~tG~~  144 (238)
T PF13360_consen  110 AGVRSSSSPAVD-GDRLYVGTS------------------SGKLVALDPKTGKL  144 (238)
T ss_dssp             CSTB--SEEEEE-TTEEEEEET------------------CSEEEEEETTTTEE
T ss_pred             cccccccCceEe-cCEEEEEec------------------cCcEEEEecCCCcE
Confidence            112234445555 445777642                  36899999888876

...

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.49  E-value=0.0053  Score=45.93  Aligned_cols=122  Identities=17%  Similarity=0.169  Sum_probs=71.8

Q ss_pred             EEcCCCcEEEeccccCccccceEEccCC-cEEEEEeCC-CeEEEEccCC-cEEE-EeccCCccccCCccEEEcCCCc-EE
Q 030700           34 RMHPNGTWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQ-QGLLKVSEEG-VTVL-VSQFNGSQLRFANDVIEASDGS-LY  108 (173)
Q Consensus        34 ~~~~~g~~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~-~~i~~~~~~g-~~~~-~~~~~~~~~~~~~~l~~~~dG~-~~  108 (173)
                      -++..|+++.....+...+ ||+++|.- +.+.++-.- .-.+.+|.++ .+.+ .....+.  +..-.-.+++||+ +|
T Consensus        53 ~~~eaGk~v~~~~lpaR~H-gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~R--HfyGHGvfs~dG~~LY  129 (366)
T COG3490          53 TLSEAGKIVFATALPARGH-GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGR--HFYGHGVFSPDGRLLY  129 (366)
T ss_pred             EEccCCceeeeeecccccC-CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCc--eeecccccCCCCcEEE
Confidence            3445666665555566788 99999864 333444322 2355566665 2222 1111222  2334467899997 78


Q ss_pred             EEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--eEEeeccccCcceEEEccCCCEEEEEec
Q 030700          109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .|++...             ...|-|=.||...+.  +-.+-.-.-.|..+.+.+||++|.|++-
T Consensus       130 ATEndfd-------------~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanG  181 (366)
T COG3490         130 ATENDFD-------------PNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANG  181 (366)
T ss_pred             eecCCCC-------------CCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCC
Confidence            8886632             234566667765332  2222233567889999999999999864

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.49  E-value=0.011  Score=43.59  Aligned_cols=136  Identities=12%  Similarity=0.155  Sum_probs=77.3

Q ss_pred             CCcceEEEcCC-CCEEEEc-CCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEe
Q 030700           10 NHPEDVSVDGN-GVLYTAT-GDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVS   86 (173)
Q Consensus        10 ~~p~~l~~~~~-g~l~~~~-~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~   86 (173)
                      ...+.++++|. -.++++. .+..|.+|| ..++........+.-. -++++|+|..+.+.+..+.+..++........ 
T Consensus        65 ~svdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~-  142 (313)
T KOG1407|consen   65 DSVDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVN-  142 (313)
T ss_pred             cchhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceee-
Confidence            35677999994 4677655 667788888 3555433223333333 58899999885666666677777743211111 


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc---ceEEEccCC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA---NGVALSEDE  163 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p---~gi~~~~dg  163 (173)
                      ..+  .....|.++..-++.+||-.++                 .|.|....=.  +++++..--..|   --|.|+|+|
T Consensus       143 ~~~--~~~e~ne~~w~~~nd~Fflt~G-----------------lG~v~ILsyp--sLkpv~si~AH~snCicI~f~p~G  201 (313)
T KOG1407|consen  143 EEQ--FKFEVNEISWNNSNDLFFLTNG-----------------LGCVEILSYP--SLKPVQSIKAHPSNCICIEFDPDG  201 (313)
T ss_pred             hhc--ccceeeeeeecCCCCEEEEecC-----------------CceEEEEecc--ccccccccccCCcceEEEEECCCC
Confidence            111  1134688888877777775432                 2444443321  233333322233   247789999


Q ss_pred             CEEEE
Q 030700          164 RFLVV  168 (173)
Q Consensus       164 ~~lyv  168 (173)
                      |++.+
T Consensus       202 ryfA~  206 (313)
T KOG1407|consen  202 RYFAT  206 (313)
T ss_pred             ceEee
Confidence            98765

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.49  E-value=0.0035  Score=48.92  Aligned_cols=143  Identities=12%  Similarity=0.166  Sum_probs=71.8

Q ss_pred             EEcCCC-CEEE-Ec--CCCeEEEEcC-CCcEEEecccc-CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEec
Q 030700           16 SVDGNG-VLYT-AT--GDGWIKRMHP-NGTWEDWHQVG-SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQ   87 (173)
Q Consensus        16 ~~~~~g-~l~~-~~--~~~~i~~~~~-~g~~~~~~~~~-~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~   87 (173)
                      +|.++| +|+| ++  ....++.+|. +++...+.+.. .... |..++++.+.+|.......+++++. +. .+.+...
T Consensus        42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~-g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTF-GGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TT-T-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCcc-ceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            456677 4554 44  3456889995 56666665543 3344 6677787777555545567999995 44 4455544


Q ss_pred             cCCccccCCccEEEcCCCcEEEEeCcCC--cC-cc--cceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           88 FNGSQLRFANDVIEASDGSLYFTVSSTK--FT-PA--EYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~--~~-~~--~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      .++..  ..-....+.|++.++......  .. ..  .+..+.++..+..+|+++|..+|+.+++...-...+-+.+||
T Consensus       121 p~~~~--g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP  197 (386)
T PF14583_consen  121 PDDWK--GYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSP  197 (386)
T ss_dssp             -TTEE--EEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEET
T ss_pred             Ccccc--cccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCC
Confidence            33221  112233456787766532111  00 01  122456667778899999999999988877655555666665

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=97.47  E-value=0.029  Score=43.21  Aligned_cols=158  Identities=17%  Similarity=0.218  Sum_probs=87.0

Q ss_pred             CccCCcceEEEcC-CCCEE-EEcCCCe------EEEEcCC---C---cEE-----Eeccc--------cCccccceEEcc
Q 030700            7 GIVNHPEDVSVDG-NGVLY-TATGDGW------IKRMHPN---G---TWE-----DWHQV--------GSQSLLGLTTTK   59 (173)
Q Consensus         7 ~~~~~p~~l~~~~-~g~l~-~~~~~~~------i~~~~~~---g---~~~-----~~~~~--------~~~p~~gl~~~~   59 (173)
                      ..+.+-.||++++ +|.+| ++| ++.      ++.+..+   +   .+.     .+...        ...+. ||++.+
T Consensus        17 ~~~GGlSgl~~~~~~~~~~avSD-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~E-gi~~~~   94 (326)
T PF13449_consen   17 IPFGGLSGLDYDPDDGRFYAVSD-RGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPE-GIAVPP   94 (326)
T ss_pred             CccCcEeeEEEeCCCCEEEEEEC-CCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChh-HeEEec
Confidence            3467789999996 66777 455 333      6655421   1   111     11111        11578 999988


Q ss_pred             CCcEEEEEeCC-------CeEEEEccCC--cEEEE--ecc-------CC-ccccCCccEEEcCCCc-EEEEeCcCCcCcc
Q 030700           60 ENNVIIVCDSQ-------QGLLKVSEEG--VTVLV--SQF-------NG-SQLRFANDVIEASDGS-LYFTVSSTKFTPA  119 (173)
Q Consensus        60 ~g~l~~v~~~~-------~~i~~~~~~g--~~~~~--~~~-------~~-~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~  119 (173)
                      +|.+ ||+..+       ..|++++.+|  .+.+.  ...       .+ +.-....+|++.|||+ +|+...+...+..
T Consensus        95 ~g~~-~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~  173 (326)
T PF13449_consen   95 DGSF-WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDG  173 (326)
T ss_pred             CCCE-EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCC
Confidence            9998 776644       4688888888  34331  111       11 1234678899999998 8887544211111


Q ss_pred             cceeeecccCCCceEEEEcCCC-Ce-eEEeec---------cccCcceEEEccCCCEEEEEe
Q 030700          120 EYYLDLVSGEPHGVLLKYDPST-NQ-TSLVLD---------GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       120 ~~~~~~~~~~~~~~v~~~d~~~-~~-~~~~~~---------~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..  ........-+++++|+.+ ++ ...+..         ....+..|++-++++ ++|-|
T Consensus       174 ~~--~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~-lLvLE  232 (326)
T PF13449_consen  174 PR--ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGR-LLVLE  232 (326)
T ss_pred             cc--cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCc-EEEEE
Confidence            00  000111225889999875 21 222222         123345677778887 55544

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=97.47  E-value=0.00027  Score=33.87  Aligned_cols=21  Identities=29%  Similarity=0.553  Sum_probs=18.3

Q ss_pred             ccCCccEEEcCCCcEEEEeCc
Q 030700           93 LRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        93 ~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      +..|.+++++++|++||+|..
T Consensus         1 f~~P~gvav~~~g~i~VaD~~   21 (28)
T PF01436_consen    1 FNYPHGVAVDSDGNIYVADSG   21 (28)
T ss_dssp             BSSEEEEEEETTSEEEEEECC
T ss_pred             CcCCcEEEEeCCCCEEEEECC
Confidence            357999999999999999854

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.46  E-value=0.0057  Score=48.84  Aligned_cols=120  Identities=15%  Similarity=0.095  Sum_probs=72.5

Q ss_pred             CeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC---eEEEEccCC--cEEEEeccCCccccCCccEEEcC
Q 030700           30 GWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVSEEG--VTVLVSQFNGSQLRFANDVIEAS  103 (173)
Q Consensus        30 ~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~  103 (173)
                      .+++.++.+ |+..++....+.-. ..+|+|||+.+.++...+   .++.+|.++  ...+ ...++    .-..=.+.|
T Consensus       218 ~~i~~~~l~~g~~~~i~~~~g~~~-~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~L-t~~~g----i~~~Ps~sp  291 (425)
T COG0823         218 PRIYYLDLNTGKRPVILNFNGNNG-APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRL-TNGFG----INTSPSWSP  291 (425)
T ss_pred             ceEEEEeccCCccceeeccCCccC-CccCCCCCCEEEEEECCCCCccEEEEcCCCCcceec-ccCCc----cccCccCCC
Confidence            347777743 44444434444444 667999998866665443   477778655  3332 22222    112456779


Q ss_pred             CCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700          104 DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       104 dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ||+ ++++....               ..-.||+++++++.++.+........--.+||||+++.+..
T Consensus       292 dG~~ivf~Sdr~---------------G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~  344 (425)
T COG0823         292 DGSKIVFTSDRG---------------GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFES  344 (425)
T ss_pred             CCCEEEEEeCCC---------------CCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEe
Confidence            996 55553221               11289999999887777766554444557899999877654

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=97.45  E-value=0.0013  Score=52.53  Aligned_cols=139  Identities=14%  Similarity=0.162  Sum_probs=79.5

Q ss_pred             cCCcceEEEcCC-CCEE-EEcCCCeEEEEcCCC---cEEEeccc---cC--ccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030700            9 VNHPEDVSVDGN-GVLY-TATGDGWIKRMHPNG---TWEDWHQV---GS--QSLLGLTTTKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus         9 ~~~p~~l~~~~~-g~l~-~~~~~~~i~~~~~~g---~~~~~~~~---~~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      .....+.+|+|. ...| .+..++.+..|+.+.   ++..+...   +.  .+. ..+|++||++ +.+.-.+|-+.++.
T Consensus       268 ia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~t-sC~~nrdg~~-iAagc~DGSIQ~W~  345 (641)
T KOG0772|consen  268 IAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVT-SCAWNRDGKL-IAAGCLDGSIQIWD  345 (641)
T ss_pred             eeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCce-eeecCCCcch-hhhcccCCceeeee
Confidence            344567789983 3444 455778887787543   23333222   11  356 8899999998 65544445444443


Q ss_pred             CC---cEEE--EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeecccc
Q 030700           79 EG---VTVL--VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLY  152 (173)
Q Consensus        79 ~g---~~~~--~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~  152 (173)
                      .+   +...  .... ..+......|.|++||+++.+-.                 .++++-.||... .++-.+..++.
T Consensus       346 ~~~~~v~p~~~vk~A-H~~g~~Itsi~FS~dg~~LlSRg-----------------~D~tLKvWDLrq~kkpL~~~tgL~  407 (641)
T KOG0772|consen  346 KGSRTVRPVMKVKDA-HLPGQDITSISFSYDGNYLLSRG-----------------FDDTLKVWDLRQFKKPLNVRTGLP  407 (641)
T ss_pred             cCCcccccceEeeec-cCCCCceeEEEeccccchhhhcc-----------------CCCceeeeeccccccchhhhcCCC
Confidence            23   2221  2111 11223567799999999877732                 235666677653 23333444544


Q ss_pred             Cc---ceEEEccCCCEEE
Q 030700          153 FA---NGVALSEDERFLV  167 (173)
Q Consensus       153 ~p---~gi~~~~dg~~ly  167 (173)
                      .+   ..++||||.+.++
T Consensus       408 t~~~~tdc~FSPd~kli~  425 (641)
T KOG0772|consen  408 TPFPGTDCCFSPDDKLIL  425 (641)
T ss_pred             ccCCCCccccCCCceEEE
Confidence            43   3589999987443

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.43  E-value=0.0025  Score=50.12  Aligned_cols=138  Identities=12%  Similarity=0.194  Sum_probs=84.3

Q ss_pred             CcceEEEcCCCCEE-EEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEE
Q 030700           11 HPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~   85 (173)
                      ..+-..+.+++.+. +....|.|+.+.. ++.+..-....+... +++|+.+++.||++.....|+.++- ..  ..++.
T Consensus       305 ~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~-~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~  383 (514)
T KOG2055|consen  305 SMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVS-DFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFV  383 (514)
T ss_pred             hhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEe-eEEEecCCcEEEEEcCCceEEEEecCCcceEEEEe
Confidence            44566777877644 3447788888873 454433223355667 8999999999788876667887774 22  44444


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC----CeeEEeec--c-ccCcceEE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST----NQTSLVLD--G-LYFANGVA  158 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~--~-~~~p~gi~  158 (173)
                      +.  |  -.+-..++++.+|.++.+ +                +..|-|-.||.++    +.++++..  + ....+.|+
T Consensus       384 D~--G--~v~gts~~~S~ng~ylA~-G----------------S~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~  442 (514)
T KOG2055|consen  384 DD--G--SVHGTSLCISLNGSYLAT-G----------------SDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQ  442 (514)
T ss_pred             ec--C--ccceeeeeecCCCceEEe-c----------------cCcceEEEeccchhhccCCCCchhhhhhhheeeeeee
Confidence            32  1  124466788889884444 2                2446777777432    22222221  1 24457899


Q ss_pred             EccCCCEEEEEe
Q 030700          159 LSEDERFLVVCE  170 (173)
Q Consensus       159 ~~~dg~~lyv~~  170 (173)
                      |++|.+.|-++.
T Consensus       443 Fn~d~qiLAiaS  454 (514)
T KOG2055|consen  443 FNHDAQILAIAS  454 (514)
T ss_pred             eCcchhhhhhhh
Confidence            999998776653

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.41  E-value=0.01  Score=46.61  Aligned_cols=137  Identities=14%  Similarity=0.118  Sum_probs=72.1

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC--cEEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVL   84 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g--~~~~   84 (173)
                      .-..+.++++....+++ .+-.|+.|+. ... ...........+ ++..++.|.+++.+.......+-+ .+|  ...+
T Consensus       263 ki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~-~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~v  341 (506)
T KOG0289|consen  263 KITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVT-GLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVV  341 (506)
T ss_pred             EEEEEEeccchhheeecCCcceEEeeccccccCccccccccccce-eeeeccCCcEEEEecCCceEEEEEccCCcEEEEE
Confidence            34455555655444333 4444555552 222 112222233446 999999999944444333222223 566  3332


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeeccccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~p~gi~~~~dg  163 (173)
                      ...  . ........+++|||.|+.+                 +.+++.|-.||...+. +..+...-.-...|+|+.+|
T Consensus       342 s~~--~-s~v~~ts~~fHpDgLifgt-----------------gt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENG  401 (506)
T KOG0289|consen  342 SDE--T-SDVEYTSAAFHPDGLIFGT-----------------GTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENG  401 (506)
T ss_pred             eec--c-ccceeEEeeEcCCceEEec-----------------cCCCceEEEEEcCCccccccCCCCCCceeEEEeccCc
Confidence            221  1 1123577999999988776                 2355777778876443 11111222334679999888


Q ss_pred             CEEEE
Q 030700          164 RFLVV  168 (173)
Q Consensus       164 ~~lyv  168 (173)
                      =+|.+
T Consensus       402 Y~Lat  406 (506)
T KOG0289|consen  402 YWLAT  406 (506)
T ss_pred             eEEEE
Confidence            55544

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.40  E-value=0.0097  Score=46.94  Aligned_cols=99  Identities=14%  Similarity=0.211  Sum_probs=61.0

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEec-cCCccccCC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQ-FNGSQLRFA   96 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~-~~~~~~~~~   96 (173)
                      ++.+|+...++.++.+|. +|+ ..|....+.+. .++. .++++ |++.....++.++. +|....... ..+..   .
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~-~~W~~~~~~~~-~~~~-~~~~v-y~~~~~g~l~ald~~tG~~~W~~~~~~~~~---~  328 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQ-IVWKREYGSVN-DFAV-DGGRI-YLVDQNDRVYALDTRGGVELWSQSDLLHRL---L  328 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCC-EEEeecCCCcc-CcEE-ECCEE-EEEcCCCeEEEEECCCCcEEEcccccCCCc---c
Confidence            678998888889999996 454 33433333344 4444 34566 88877778888985 663333221 11111   1


Q ss_pred             ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      ...++ .+|.+|+.+.                  +|.|+.+|+++|++
T Consensus       329 ~sp~v-~~g~l~v~~~------------------~G~l~~ld~~tG~~  357 (394)
T PRK11138        329 TAPVL-YNGYLVVGDS------------------EGYLHWINREDGRF  357 (394)
T ss_pred             cCCEE-ECCEEEEEeC------------------CCEEEEEECCCCCE
Confidence            22233 2678998853                  37899999988865

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.39  E-value=0.013  Score=49.81  Aligned_cols=141  Identities=14%  Similarity=0.208  Sum_probs=79.8

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEEEe
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVS   86 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~~~   86 (173)
                      ....++++.+|...+.. .+-.|..++. |+..++.......|.+++.++|++++|.++.....+..++ .++ ......
T Consensus        98 p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~  177 (933)
T KOG1274|consen   98 PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLT  177 (933)
T ss_pred             cceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcc
Confidence            35678888888777555 4555666653 4443333333445555999999999966554333344444 356 322222


Q ss_pred             ccC-Ccc---ccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-c--cCcceEE
Q 030700           87 QFN-GSQ---LRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-L--YFANGVA  158 (173)
Q Consensus        87 ~~~-~~~---~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~--~~p~gi~  158 (173)
                      ... .-.   -....-++++|+|. +.+..                  .++.|..|+..+.+..-.... .  ..-+-++
T Consensus       178 ~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~------------------~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~  239 (933)
T KOG1274|consen  178 GVDKDNEFILSRICTRLAWHPKGGTLAVPP------------------VDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQ  239 (933)
T ss_pred             cCCccccccccceeeeeeecCCCCeEEeec------------------cCCeEEEEccCCceeheeecccccccceEEEE
Confidence            211 100   12345678999854 44432                  236778888876654333322 2  2245788


Q ss_pred             EccCCCEEEEE
Q 030700          159 LSEDERFLVVC  169 (173)
Q Consensus       159 ~~~dg~~lyv~  169 (173)
                      |+|.|++|..+
T Consensus       240 wsPnG~YiAAs  250 (933)
T KOG1274|consen  240 WSPNGKYIAAS  250 (933)
T ss_pred             EcCCCcEEeee
Confidence            99998766443

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=97.37  E-value=0.0015  Score=51.51  Aligned_cols=135  Identities=13%  Similarity=0.127  Sum_probs=93.1

Q ss_pred             CccCCcceEEEcC-CCCEEEEc-CCCeEEEEcC--CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc--cC
Q 030700            7 GIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHP--NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EE   79 (173)
Q Consensus         7 ~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~--~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~   79 (173)
                      |-.++...+.|-| .++|+.+. .++.|+.|+.  +++..+ +........ .++|+.+|.- +.+...++-++++  ..
T Consensus       212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vr-d~~~s~~g~~-fLS~sfD~~lKlwDtET  289 (503)
T KOG0282|consen  212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVR-DASFNNCGTS-FLSASFDRFLKLWDTET  289 (503)
T ss_pred             CCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhh-hhhccccCCe-eeeeecceeeeeecccc
Confidence            3345667777888 78999877 7888888874  455543 433344455 8899999988 6666666666655  36


Q ss_pred             C--cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcc
Q 030700           80 G--VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFAN  155 (173)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~  155 (173)
                      |  ...+...      ..|..+.+.||+ +++++                 +..+++|..+|..++++ ......+...+
T Consensus       290 G~~~~~f~~~------~~~~cvkf~pd~~n~fl~-----------------G~sd~ki~~wDiRs~kvvqeYd~hLg~i~  346 (503)
T KOG0282|consen  290 GQVLSRFHLD------KVPTCVKFHPDNQNIFLV-----------------GGSDKKIRQWDIRSGKVVQEYDRHLGAIL  346 (503)
T ss_pred             ceEEEEEecC------CCceeeecCCCCCcEEEE-----------------ecCCCcEEEEeccchHHHHHHHhhhhhee
Confidence            7  3444322      357889999988 67776                 34568999999987763 22334577788


Q ss_pred             eEEEccCCCEE
Q 030700          156 GVALSEDERFL  166 (173)
Q Consensus       156 gi~~~~dg~~l  166 (173)
                      .|.|=++|+..
T Consensus       347 ~i~F~~~g~rF  357 (503)
T KOG0282|consen  347 DITFVDEGRRF  357 (503)
T ss_pred             eeEEccCCceE
Confidence            89998888754

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=97.34  E-value=0.0099  Score=44.54  Aligned_cols=105  Identities=15%  Similarity=0.232  Sum_probs=67.5

Q ss_pred             eEEEcCCCCEEEEc-CCCeEEEEcCCCcEE---EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEe
Q 030700           14 DVSVDGNGVLYTAT-GDGWIKRMHPNGTWE---DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVS   86 (173)
Q Consensus        14 ~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~---~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~   86 (173)
                      ...|+|+|..+++. .+..|+-|+..|...   +.....+... ++.+.+|++.++-|.....++.+|. .|  ...+..
T Consensus        52 ~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM-~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~  130 (338)
T KOG0265|consen   52 TIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVM-ELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKG  130 (338)
T ss_pred             EEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeE-eeeeccCCCEEEEecCCceEEEEecccceeeehhcc
Confidence            46789999999877 778898888666432   2234456778 9999999999566655566777774 66  222221


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS  140 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  140 (173)
                        ..   ...|.+.....|-..++..+                .++++-.+|..
T Consensus       131 --h~---~~vNs~~p~rrg~~lv~Sgs----------------dD~t~kl~D~R  163 (338)
T KOG0265|consen  131 --HT---SFVNSLDPSRRGPQLVCSGS----------------DDGTLKLWDIR  163 (338)
T ss_pred             --cc---ceeeecCccccCCeEEEecC----------------CCceEEEEeec
Confidence              11   24555664555666665432                45677777765

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=97.33  E-value=0.0077  Score=51.08  Aligned_cols=125  Identities=14%  Similarity=0.128  Sum_probs=75.2

Q ss_pred             CEEEEcCCCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-cEEEEeccCCccccCCc
Q 030700           22 VLYTATGDGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQFNGSQLRFAN   97 (173)
Q Consensus        22 ~l~~~~~~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~~~~~~~~~~~   97 (173)
                      ++..+..++.|.++. +.+....+......|...++++.+|++ .++... ..|..++. |+ .+......++    ..-
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~-iaagsdD~~vK~~~~~D~s~~~~lrgh~a----pVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKM-IAAGSDDTAVKLLNLDDSSQEKVLRGHDA----PVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcE-EEeecCceeEEEEeccccchheeecccCC----cee
Confidence            444555677777776 344333232333334448999999998 544444 34555563 44 3333344433    356


Q ss_pred             cEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--------cCc-ceEEEccCCCEEEE
Q 030700           98 DVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--------YFA-NGVALSEDERFLVV  168 (173)
Q Consensus        98 ~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--------~~p-~gi~~~~dg~~lyv  168 (173)
                      .+.++|+|++.++..                 -+|.|+.|+.+++.+...+.++        ..+ +-++|+|++..+.+
T Consensus       143 ~l~~~p~~~fLAvss-----------------~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~  205 (933)
T KOG1274|consen  143 QLSYDPKGNFLAVSS-----------------CDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAV  205 (933)
T ss_pred             eeeEcCCCCEEEEEe-----------------cCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEe
Confidence            799999999877642                 3488999998877655554432        111 34889999665554

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=97.32  E-value=0.0031  Score=51.15  Aligned_cols=94  Identities=17%  Similarity=0.184  Sum_probs=63.9

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEecccc--CccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEe
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~   86 (173)
                      -..+.+|.+|.+|++..+| +++++. .|+........  ...+ .+..|..|++ ||.. ..|+++..+.|  ......
T Consensus       167 V~aLv~D~~g~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~-al~~d~qg~L-WVGT-dqGv~~~e~~G~~~sn~~~  242 (671)
T COG3292         167 VVALVFDANGRLWVGTPDG-LSYFDAGRGKALQLASPPLDKAIN-ALIADVQGRL-WVGT-DQGVYLQEAEGWRASNWGP  242 (671)
T ss_pred             ceeeeeeccCcEEEecCCc-ceEEccccceEEEcCCCcchhhHH-HHHHHhcCcE-EEEe-ccceEEEchhhccccccCC
Confidence            3457888899999988765 888874 56665543332  2345 7888899999 8874 55788888776  222222


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                         ..|.....-+..|.+|++|++..
T Consensus       243 ---~lp~~~I~ll~qD~qG~lWiGTe  265 (671)
T COG3292         243 ---MLPSGNILLLVQDAQGELWIGTE  265 (671)
T ss_pred             ---CCcchheeeeecccCCCEEEeec
Confidence               22334566678888999999753

>PF05787 DUF839: Bacterial protein of unknown function (DUF839); InterPro: IPR008557 This family consists of bacterial proteins of unknown function

Probab=97.28  E-value=0.013  Score=48.01  Aligned_cols=79  Identities=22%  Similarity=0.399  Sum_probs=48.6

Q ss_pred             ccccCCccEEEcC-CCcEEEEeCcCCcC-cccce-eeecccCCCceEEEEcCCCC-------eeEEee------------
Q 030700           91 SQLRFANDVIEAS-DGSLYFTVSSTKFT-PAEYY-LDLVSGEPHGVLLKYDPSTN-------QTSLVL------------  148 (173)
Q Consensus        91 ~~~~~~~~l~~~~-dG~~~v~~~~~~~~-~~~~~-~~~~~~~~~~~v~~~d~~~~-------~~~~~~------------  148 (173)
                      .++.+|.++.++| +|.+|++.....-. ..... .........|.|++++++..       ..+.+.            
T Consensus       347 T~f~RpEgi~~~p~~g~vY~a~T~~~~r~~~~~~~~n~~~~n~~G~I~r~~~~~~d~~~~~f~~~~~~~~g~~~~~~~~~  426 (524)
T PF05787_consen  347 TPFDRPEGITVNPDDGEVYFALTNNSGRGESDVDAANPRAGNGYGQIYRYDPDGNDHAATTFTWELFLVGGDPTDASGNG  426 (524)
T ss_pred             ccccCccCeeEeCCCCEEEEEEecCCCCcccccccCCcccCCcccEEEEecccCCccccceeEEEEEEEecCcccccccc
Confidence            3578999999999 57899986442200 00000 00012345689999998754       222221            


Q ss_pred             ------ccccCcceEEEccCCCEEEEEe
Q 030700          149 ------DGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       149 ------~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                            ..+..|.+|+|+++|+ |||++
T Consensus       427 ~~~~~~~~f~sPDNL~~d~~G~-LwI~e  453 (524)
T PF05787_consen  427 SNKCDDNGFASPDNLAFDPDGN-LWIQE  453 (524)
T ss_pred             cCcccCCCcCCCCceEECCCCC-EEEEe
Confidence                  1267899999999998 55543

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=97.26  E-value=0.0055  Score=46.24  Aligned_cols=141  Identities=15%  Similarity=0.185  Sum_probs=83.8

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC----cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG----TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g----~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~   82 (173)
                      ++....|.|+|...+.++. .++.|--+|-.-    +..++........ .|.|+|.|.++.+. ..+-+.++.. +-.+
T Consensus       172 ~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vr-siSfHPsGefllvg-TdHp~~rlYdv~T~Q  249 (430)
T KOG0640|consen  172 VDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVR-SISFHPSGEFLLVG-TDHPTLRLYDVNTYQ  249 (430)
T ss_pred             cCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceee-eEeecCCCceEEEe-cCCCceeEEecccee
Confidence            4556789999988888766 667676666322    1222234444556 89999999995554 4444555443 2222


Q ss_pred             EEEe-ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe---eccccCcceEE
Q 030700           83 VLVS-QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV---LDGLYFANGVA  158 (173)
Q Consensus        83 ~~~~-~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~---~~~~~~p~gi~  158 (173)
                      -+.. ..+.+--...+.+..++.|++|+|-.                 .+|.|-.||--++++..-   +.+........
T Consensus       250 cfvsanPd~qht~ai~~V~Ys~t~~lYvTaS-----------------kDG~IklwDGVS~rCv~t~~~AH~gsevcSa~  312 (430)
T KOG0640|consen  250 CFVSANPDDQHTGAITQVRYSSTGSLYVTAS-----------------KDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAV  312 (430)
T ss_pred             EeeecCcccccccceeEEEecCCccEEEEec-----------------cCCcEEeeccccHHHHHHHHhhcCCceeeeEE
Confidence            2222 12222234678889999999999943                 357777777543332111   22334445677


Q ss_pred             EccCCCEEEE
Q 030700          159 LSEDERFLVV  168 (173)
Q Consensus       159 ~~~dg~~lyv  168 (173)
                      |+.+|+++.-
T Consensus       313 Ftkn~kyiLs  322 (430)
T KOG0640|consen  313 FTKNGKYILS  322 (430)
T ss_pred             EccCCeEEee
Confidence            8888876653

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=97.25  E-value=0.025  Score=45.19  Aligned_cols=124  Identities=15%  Similarity=0.134  Sum_probs=73.0

Q ss_pred             CCCEEEEcCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEe-CCCeEEEEccCC--cEEEEeccCCccccC
Q 030700           20 NGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVSEEG--VTVLVSQFNGSQLRF   95 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~~i~~~~~~g--~~~~~~~~~~~~~~~   95 (173)
                      +|.+++.-..|+.+.+++. |-...+...++.-...+..++++ . ++.. .+..+...+.+|  .+.+...     +..
T Consensus       331 ~Gd~ia~VSRGkaFi~~~~~~~~iqv~~~~~VrY~r~~~~~e~-~-vigt~dgD~l~iyd~~~~e~kr~e~~-----lg~  403 (668)
T COG4946         331 NGDYIALVSRGKAFIMRPWDGYSIQVGKKGGVRYRRIQVDPEG-D-VIGTNDGDKLGIYDKDGGEVKRIEKD-----LGN  403 (668)
T ss_pred             CCcEEEEEecCcEEEECCCCCeeEEcCCCCceEEEEEccCCcc-e-EEeccCCceEEEEecCCceEEEeeCC-----ccc
Confidence            6777765556777766653 33333322222111023333442 2 3333 334566666554  3444322     346


Q ss_pred             CccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEE
Q 030700           96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVV  168 (173)
Q Consensus        96 ~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv  168 (173)
                      ...+.+++||. +.+++..                  ..||.+|.++|.++..... .....+++|+|+++++..
T Consensus       404 I~av~vs~dGK~~vvaNdr------------------~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAY  460 (668)
T COG4946         404 IEAVKVSPDGKKVVVANDR------------------FELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAY  460 (668)
T ss_pred             eEEEEEcCCCcEEEEEcCc------------------eEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEE
Confidence            67899999998 5555422                  5899999999988777653 566788999999987643

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.22  E-value=0.029  Score=44.98  Aligned_cols=133  Identities=13%  Similarity=0.140  Sum_probs=76.9

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL   84 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~   84 (173)
                      -.+..+++.+|+..+|++. .++.+.-|+ +-+ ..|... ..... .+.|+|.| .+.+......-+.++...  .-.+
T Consensus       368 ~delwgla~hps~~q~~T~gqdk~v~lW~-~~k-~~wt~~~~d~~~-~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~  443 (626)
T KOG2106|consen  368 GDELWGLATHPSKNQLLTCGQDKHVRLWN-DHK-LEWTKIIEDPAE-CADFHPSG-VVAVGTATGRWFVLDTETQDLVTI  443 (626)
T ss_pred             ccceeeEEcCCChhheeeccCcceEEEcc-CCc-eeEEEEecCcee-EeeccCcc-eEEEeeccceEEEEecccceeEEE
Confidence            3578899999988877766 666666676 332 222222 22234 77888988 424433333445555332  2222


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEccC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSED  162 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~d  162 (173)
                      ..  ++.   ..+-++++|+|.++..-..               .+.=.|||++..+.+...+.  .+ +....+.||+|
T Consensus       444 ~~--d~~---~ls~v~ysp~G~~lAvgs~---------------d~~iyiy~Vs~~g~~y~r~~k~~g-s~ithLDwS~D  502 (626)
T KOG2106|consen  444 HT--DNE---QLSVVRYSPDGAFLAVGSH---------------DNHIYIYRVSANGRKYSRVGKCSG-SPITHLDWSSD  502 (626)
T ss_pred             Ee--cCC---ceEEEEEcCCCCEEEEecC---------------CCeEEEEEECCCCcEEEEeeeecC-ceeEEeeecCC
Confidence            22  232   3466999999986665322               12236788888754443332  23 55578999999


Q ss_pred             CCEE
Q 030700          163 ERFL  166 (173)
Q Consensus       163 g~~l  166 (173)
                      +++|
T Consensus       503 s~~~  506 (626)
T KOG2106|consen  503 SQFL  506 (626)
T ss_pred             CceE
Confidence            8854

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.21  E-value=0.00098  Score=34.84  Aligned_cols=37  Identities=32%  Similarity=0.411  Sum_probs=29.0

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT   40 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~   40 (173)
                      +....+..|.++++|+ ++.||++| ....|++.+.+|.
T Consensus         3 ~~~~~~~~~~~la~d~~~~~lYw~D~~~~~I~~~~~~g~   41 (43)
T smart00135        3 LLSEGLGHPNGLAVDWIEGRLYWTDWGLDVIEVANLDGT   41 (43)
T ss_pred             EEECCCCCcCEEEEeecCCEEEEEeCCCCEEEEEeCCCC
Confidence            3344589999999999 56899999 5678888887664

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=97.21  E-value=0.037  Score=43.94  Aligned_cols=70  Identities=13%  Similarity=0.164  Sum_probs=48.9

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g   80 (173)
                      +...+|+|..+|.+.++. .+|.+..|+.+|.+.........|...|.++.+|.+ +++... ..++.+|. .|
T Consensus       236 kdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk~G~y-ilS~~vD~ttilwd~~~g  308 (524)
T KOG0273|consen  236 KDVTSLDWNNDGTLLATGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNKKGTY-ILSGGVDGTTILWDAHTG  308 (524)
T ss_pred             CCcceEEecCCCCeEEEeecCcEEEEEecCchhhhhhhccCCceEEEEEcCCCCE-EEeccCCccEEEEeccCc
Confidence            567889999999988776 788888899888765433333334338999999998 444433 44555553 66

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=97.21  E-value=0.019  Score=45.43  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=82.8

Q ss_pred             CcceEEEcCCCCE-EEEcCCCeEEEEcCCCcE----EEeccccCccccceEEccCCc-EEEEEeCCCeEEEEcc-CC-cE
Q 030700           11 HPEDVSVDGNGVL-YTATGDGWIKRMHPNGTW----EDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l-~~~~~~~~i~~~~~~g~~----~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      +..++.|+|.-.| .+++.++.+..+..||+.    +.+.- ...|.-..+|.++|. .++++....-.+.+|. .+ +.
T Consensus       215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l-~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~  293 (514)
T KOG2055|consen  215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL-EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVT  293 (514)
T ss_pred             CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee-ccCccceeeecCCCceEEEecccceEEEEeeccccccc
Confidence            4567999997654 466666655544445543    22211 223322678889998 4233322233555553 44 55


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      .+... .+.+..+...+.+++++.+++..+                 ..|.|+.....|++...-..-.....+++|+.|
T Consensus       294 k~~~~-~g~e~~~~e~FeVShd~~fia~~G-----------------~~G~I~lLhakT~eli~s~KieG~v~~~~fsSd  355 (514)
T KOG2055|consen  294 KLKPP-YGVEEKSMERFEVSHDSNFIAIAG-----------------NNGHIHLLHAKTKELITSFKIEGVVSDFTFSSD  355 (514)
T ss_pred             cccCC-CCcccchhheeEecCCCCeEEEcc-----------------cCceEEeehhhhhhhhheeeeccEEeeEEEecC
Confidence            54332 233334667789999998666543                 236788877766654333333445578999999


Q ss_pred             CCEEEEE
Q 030700          163 ERFLVVC  169 (173)
Q Consensus       163 g~~lyv~  169 (173)
                      ++.||++
T Consensus       356 sk~l~~~  362 (514)
T KOG2055|consen  356 SKELLAS  362 (514)
T ss_pred             CcEEEEE
Confidence            9988886

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=97.19  E-value=0.016  Score=42.71  Aligned_cols=96  Identities=14%  Similarity=0.182  Sum_probs=53.6

Q ss_pred             cccceEEccCCcEEEEEeCCCeEEEEccC-CcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccC
Q 030700           51 SLLGLTTTKENNVIIVCDSQQGLLKVSEE-GVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (173)
Q Consensus        51 p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~  129 (173)
                      .+ -++++-++++ ++...+.|.+.+-.- .++.+... ...+ ..---|.++|+|+.+.+                 +.
T Consensus       150 ~n-e~~w~~~nd~-Fflt~GlG~v~ILsypsLkpv~si-~AH~-snCicI~f~p~GryfA~-----------------Gs  208 (313)
T KOG1407|consen  150 VN-EISWNNSNDL-FFLTNGLGCVEILSYPSLKPVQSI-KAHP-SNCICIEFDPDGRYFAT-----------------GS  208 (313)
T ss_pred             ee-eeeecCCCCE-EEEecCCceEEEEecccccccccc-ccCC-cceEEEEECCCCceEee-----------------cc
Confidence            45 7778777777 555555444433221 12222211 1111 12345688999987766                 22


Q ss_pred             CCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEE
Q 030700          130 PHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLV  167 (173)
Q Consensus       130 ~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~ly  167 (173)
                      .+.-+..+|++..-+......+..| ..|.||.||++|.
T Consensus       209 ADAlvSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lA  247 (313)
T KOG1407|consen  209 ADALVSLWDVDELICERCISRLDWPVRTLSFSHDGRMLA  247 (313)
T ss_pred             ccceeeccChhHhhhheeeccccCceEEEEeccCcceee
Confidence            4456667787644444555555555 5688888887653

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=97.18  E-value=0.042  Score=44.14  Aligned_cols=134  Identities=16%  Similarity=0.101  Sum_probs=79.9

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEe-ccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEeccC
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN   89 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~   89 (173)
                      .++-++-. .+.||++...+.|++=+.++..... ..+..... |++.++...+ |++....+.++++.+..-.+...+.
T Consensus       331 ~iRtv~e~-~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delw-gla~hps~~q-~~T~gqdk~v~lW~~~k~~wt~~~~  407 (626)
T KOG2106|consen  331 PIRTVAEG-KGDILVGTTRNFILQGTLENGFTLTVQGHGDELW-GLATHPSKNQ-LLTCGQDKHVRLWNDHKLEWTKIIE  407 (626)
T ss_pred             CeeEEecC-CCcEEEeeccceEEEeeecCCceEEEEeccccee-eEEcCCChhh-eeeccCcceEEEccCCceeEEEEec
Confidence            34444422 4469998877788877665543332 23344667 9999998888 7766666666666544111222221


Q ss_pred             CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus        90 ~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                          .....+.++|.|.+-+..                  ..|+.+.+|.++.....+...-...+-+.++|||.+|.|.
T Consensus       408 ----d~~~~~~fhpsg~va~Gt------------------~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvg  465 (626)
T KOG2106|consen  408 ----DPAECADFHPSGVVAVGT------------------ATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVG  465 (626)
T ss_pred             ----CceeEeeccCcceEEEee------------------ccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEe
Confidence                134568888988544442                  3378888888764433333333334668888888877664

>PTZ00420 coronin; Provisional

Probab=97.15  E-value=0.093  Score=43.53  Aligned_cols=70  Identities=4%  Similarity=-0.064  Sum_probs=43.9

Q ss_pred             CCcceEEEcCCCC-EEEE-cCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           10 NHPEDVSVDGNGV-LYTA-TGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~-~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ....+++|+|++. ++++ ..++.|..||.. ++............ .++|+++|++|..+.....+..+|. .+
T Consensus       126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~-SlswspdG~lLat~s~D~~IrIwD~Rsg  199 (568)
T PTZ00420        126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLS-SLKWNIKGNLLSGTCVGKHMHIIDPRKQ  199 (568)
T ss_pred             CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEE-EEEECCCCCEEEEEecCCEEEEEECCCC
Confidence            3467899999775 4444 478889999864 44322122334567 8999999999444433344555564 45

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=97.15  E-value=0.074  Score=41.00  Aligned_cols=136  Identities=11%  Similarity=0.080  Sum_probs=75.7

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEE
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLV   85 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~   85 (173)
                      -..++.+|+-++.++. .+..-+.|+. +|.+. .......... .+.|+.+|.+ +++..-.+.+++.  ..| .+...
T Consensus        67 vFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt-~~~Fshdgtl-LATGdmsG~v~v~~~stg~~~~~~  144 (399)
T KOG0296|consen   67 VFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVT-CCSFSHDGTL-LATGDMSGKVLVFKVSTGGEQWKL  144 (399)
T ss_pred             eEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceE-EEEEccCceE-EEecCCCccEEEEEcccCceEEEe
Confidence            3457777866777666 5555566653 45432 2333344566 8899999987 5443334544444  355 33222


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDER  164 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~  164 (173)
                      . ...   .-..=|..+|.+.++++                 +..+|.+|.|...++....+..+...| +-=.|.|||+
T Consensus       145 ~-~e~---~dieWl~WHp~a~illA-----------------G~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGK  203 (399)
T KOG0296|consen  145 D-QEV---EDIEWLKWHPRAHILLA-----------------GSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGK  203 (399)
T ss_pred             e-ccc---CceEEEEecccccEEEe-----------------ecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCc
Confidence            1 111   11222677888776665                 345688888887654444444443333 2336778888


Q ss_pred             EEEEEe
Q 030700          165 FLVVCE  170 (173)
Q Consensus       165 ~lyv~~  170 (173)
                      .+....
T Consensus       204 r~~tgy  209 (399)
T KOG0296|consen  204 RILTGY  209 (399)
T ss_pred             eEEEEe
Confidence            776643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=97.13  E-value=0.026  Score=44.54  Aligned_cols=136  Identities=18%  Similarity=0.145  Sum_probs=79.9

Q ss_pred             ceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEe-ccccCccccceEEccCCcEEEEEeCCCeEEEEcc---------CC
Q 030700           13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---------EG   80 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---------~g   80 (173)
                      .+|+-+|.|.+.++. ..+.||.|. .+|.+..+ ..+.-... .|.|..||.+ +++...++.+.++.         ++
T Consensus        85 ~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~IT-cL~fs~dgs~-iiTgskDg~V~vW~l~~lv~a~~~~  162 (476)
T KOG0646|consen   85 HALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSIT-CLKFSDDGSH-IITGSKDGAVLVWLLTDLVSADNDH  162 (476)
T ss_pred             eeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhcccee-EEEEeCCCcE-EEecCCCccEEEEEEEeecccccCC
Confidence            467777899877766 778999998 46775543 33333455 9999999999 77766655443331         11


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCC---cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcce
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG  156 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG---~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~g  156 (173)
                       ...+.. ..+.. ....+|.+.+-|   ++|-+                  +.+.++-.||...+.+-.-..-...++.
T Consensus       163 ~~~p~~~-f~~Ht-lsITDl~ig~Gg~~~rl~Ta------------------S~D~t~k~wdlS~g~LLlti~fp~si~a  222 (476)
T KOG0646|consen  163 SVKPLHI-FSDHT-LSITDLQIGSGGTNARLYTA------------------SEDRTIKLWDLSLGVLLLTITFPSSIKA  222 (476)
T ss_pred             Cccceee-eccCc-ceeEEEEecCCCccceEEEe------------------cCCceEEEEEeccceeeEEEecCCccee
Confidence             111111 00000 133455555432   23333                  2345666666665654333333566689


Q ss_pred             EEEccCCCEEEEEe
Q 030700          157 VALSEDERFLVVCE  170 (173)
Q Consensus       157 i~~~~dg~~lyv~~  170 (173)
                      ++++|.++.+||..
T Consensus       223 v~lDpae~~~yiGt  236 (476)
T KOG0646|consen  223 VALDPAERVVYIGT  236 (476)
T ss_pred             EEEcccccEEEecC
Confidence            99999999999853

>PLN00181 protein SPA1-RELATED; Provisional

Probab=97.13  E-value=0.094  Score=45.30  Aligned_cols=133  Identities=14%  Similarity=0.081  Sum_probs=72.5

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCCC-----cEE----EeccccCccccceEEccC-CcEEEEEeCCCeEEEEc-c-
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNG-----TWE----DWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVS-E-   78 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-----~~~----~~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~-~-   78 (173)
                      ..+++|+++|.++++. .++.|..|+...     ...    .......... ++++++. +++ +++...++.++++ . 
T Consensus       486 V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~-~l~~~~~~~~~-las~~~Dg~v~lWd~~  563 (793)
T PLN00181        486 VCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLS-GICWNSYIKSQ-VASSNFEGVVQVWDVA  563 (793)
T ss_pred             EEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecccCcee-eEEeccCCCCE-EEEEeCCCeEEEEECC
Confidence            5678999999877555 788888887432     110    0011122345 7888764 566 4444444555554 3 


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcc
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN  155 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~  155 (173)
                      .+  ...+. ...    .....++++| +|.++++-.                 .++.|..||..++.............
T Consensus       564 ~~~~~~~~~-~H~----~~V~~l~~~p~~~~~L~Sgs-----------------~Dg~v~iWd~~~~~~~~~~~~~~~v~  621 (793)
T PLN00181        564 RSQLVTEMK-EHE----KRVWSIDYSSADPTLLASGS-----------------DDGSVKLWSINQGVSIGTIKTKANIC  621 (793)
T ss_pred             CCeEEEEec-CCC----CCEEEEEEcCCCCCEEEEEc-----------------CCCEEEEEECCCCcEEEEEecCCCeE
Confidence            34  22221 111    3467899986 777777632                 34678888877654433222223344


Q ss_pred             eEEEc-cCCCEEEE
Q 030700          156 GVALS-EDERFLVV  168 (173)
Q Consensus       156 gi~~~-~dg~~lyv  168 (173)
                      .+.|+ ++++.+.+
T Consensus       622 ~v~~~~~~g~~lat  635 (793)
T PLN00181        622 CVQFPSESGRSLAF  635 (793)
T ss_pred             EEEEeCCCCCEEEE
Confidence            56663 34554444

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=97.12  E-value=0.043  Score=41.57  Aligned_cols=121  Identities=17%  Similarity=0.138  Sum_probs=69.6

Q ss_pred             CCCeEEEEcCCCc--EEEeccccCccccceEEccCCc--EEEEEeCCCeEEEEccCC-cEEEEeccCCccccCCccEEEc
Q 030700           28 GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENN--VIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEA  102 (173)
Q Consensus        28 ~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~--l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~  102 (173)
                      .+..|+.||...+  ...+..+.+..+ .+.|.+.-.  . .++...++.+.++..| .+.+.. ..+.. ...++++++
T Consensus        61 sDetI~IYDm~k~~qlg~ll~Hagsit-aL~F~~~~S~sh-LlS~sdDG~i~iw~~~~W~~~~s-lK~H~-~~Vt~lsiH  136 (362)
T KOG0294|consen   61 SDETIHIYDMRKRKQLGILLSHAGSIT-ALKFYPPLSKSH-LLSGSDDGHIIIWRVGSWELLKS-LKAHK-GQVTDLSIH  136 (362)
T ss_pred             CCCcEEEEeccchhhhcceeccccceE-EEEecCCcchhh-eeeecCCCcEEEEEcCCeEEeee-ecccc-cccceeEec
Confidence            6677888885432  223334456666 888876541  3 2333445555555544 333222 11111 348999999


Q ss_pred             CCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       103 ~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      |.|++-++-+.                 ++.+-.+|.-+|+...+..--..+.-+.|+|.|.+.|+.
T Consensus       137 PS~KLALsVg~-----------------D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~  186 (362)
T KOG0294|consen  137 PSGKLALSVGG-----------------DQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVS  186 (362)
T ss_pred             CCCceEEEEcC-----------------CceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEE
Confidence            99998777432                 345555665555554444434455567888888766664

>smart00135 LY Low-density lipoprotein-receptor YWTD domain

Probab=97.12  E-value=0.0012  Score=34.49  Aligned_cols=27  Identities=26%  Similarity=0.132  Sum_probs=22.9

Q ss_pred             eeccccCcceEEEccCCCEEEEEecCC
Q 030700          147 VLDGLYFANGVALSEDERFLVVCESWK  173 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~dg~~lyv~~~~~  173 (173)
                      +..+...|+|++|++.++.||++|..+
T Consensus         4 ~~~~~~~~~~la~d~~~~~lYw~D~~~   30 (43)
T smart00135        4 LSEGLGHPNGLAVDWIEGRLYWTDWGL   30 (43)
T ss_pred             EECCCCCcCEEEEeecCCEEEEEeCCC
Confidence            445688899999999999999999753

Type "B" repeats in low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. Also present in a variety of molecules similar to gp300/megalin.

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=97.10  E-value=0.023  Score=40.43  Aligned_cols=95  Identities=14%  Similarity=0.034  Sum_probs=58.4

Q ss_pred             cceEEEcCCCCEE-EEc--CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC--Ce-EEEEccCCcEEEE
Q 030700           12 PEDVSVDGNGVLY-TAT--GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--QG-LLKVSEEGVTVLV   85 (173)
Q Consensus        12 p~~l~~~~~g~l~-~~~--~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~--~~-i~~~~~~g~~~~~   85 (173)
                      ...++|.|+|.-+ +..  ....|..++..++...-.. ....+ .+.++|+|+++.++..+  .+ +...|....+.+.
T Consensus        62 I~~~~WsP~g~~favi~g~~~~~v~lyd~~~~~i~~~~-~~~~n-~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~  139 (194)
T PF08662_consen   62 IHDVAWSPNGNEFAVIYGSMPAKVTLYDVKGKKIFSFG-TQPRN-TISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKIS  139 (194)
T ss_pred             eEEEEECcCCCEEEEEEccCCcccEEEcCcccEeEeec-CCCce-EEEECCCCCEEEEEEccCCCcEEEEEECCCCEEee
Confidence            6789999988543 332  4457778887655433211 23445 89999999996666544  23 4444433333332


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ....    .....++.+|||+.+++..
T Consensus       140 ~~~~----~~~t~~~WsPdGr~~~ta~  162 (194)
T PF08662_consen  140 TFEH----SDATDVEWSPDGRYLATAT  162 (194)
T ss_pred             cccc----CcEEEEEEcCCCCEEEEEE
Confidence            2211    2468899999999877753

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=97.08  E-value=0.071  Score=39.62  Aligned_cols=120  Identities=12%  Similarity=0.073  Sum_probs=65.9

Q ss_pred             CCeEEEEc-CCCcEEEeccccCccccceEEccCCcEEEEEeCC----Ce---EEEEccC-----CcEEEEeccCCccccC
Q 030700           29 DGWIKRMH-PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QG---LLKVSEE-----GVTVLVSQFNGSQLRF   95 (173)
Q Consensus        29 ~~~i~~~~-~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----~~---i~~~~~~-----g~~~~~~~~~~~~~~~   95 (173)
                      +..+.-|| ++|+............ .+.|+.+|+++.++...    .+   ++.+..+     +.+.+.....  +-..
T Consensus        73 D~t~kLWDv~tGk~la~~k~~~~Vk-~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t--~~sk  149 (327)
T KOG0643|consen   73 DQTAKLWDVETGKQLATWKTNSPVK-RVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPT--PDSK  149 (327)
T ss_pred             cceeEEEEcCCCcEEEEeecCCeeE-EEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecC--Cccc
Confidence            33344444 3444333233344456 88899999885555422    22   2222211     1222222211  1145


Q ss_pred             CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeec-cccCcceEEEccCCCEEEEE
Q 030700           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLD-GLYFANGVALSEDERFLVVC  169 (173)
Q Consensus        96 ~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~-~~~~p~gi~~~~dg~~lyv~  169 (173)
                      ++....+|-|...|+-                 ..+|.|.+||..+|+. ..... .....|.|++++|.. .+++
T Consensus       150 it~a~Wg~l~~~ii~G-----------------he~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T-~FiT  207 (327)
T KOG0643|consen  150 ITSALWGPLGETIIAG-----------------HEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRT-YFIT  207 (327)
T ss_pred             eeeeeecccCCEEEEe-----------------cCCCcEEEEEcccCceeeechhhhccccccccccCCcc-eEEe
Confidence            6777788877766652                 3568999999988743 22222 245779999999975 5554

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=97.08  E-value=0.011  Score=49.81  Aligned_cols=140  Identities=16%  Similarity=0.141  Sum_probs=84.8

Q ss_pred             CCcceEEEcCCCC-EEEEcCCCeEEEEcCCCcEE--Eec---cccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030700           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWE--DWH---QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT   82 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g~~~--~~~---~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~   82 (173)
                      ....++++++=|+ .+++...|.|-+++....+.  .+.   ...+... |++.|.-+++ .|+...+|++.++. .+..
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~-gla~D~~n~~-~vsa~~~Gilkfw~f~~k~  526 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVT-GLAVDGTNRL-LVSAGADGILKFWDFKKKV  526 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCcee-EEEecCCCce-EEEccCcceEEEEecCCcc
Confidence            3456788888665 44555888999998543322  231   2233456 9999988888 77766778887775 3322


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~~~~  161 (173)
                      .....--+   ..+..+..+..-.+++..                 ..+=.|..+|..|.++ +.........+.++|||
T Consensus       527 l~~~l~l~---~~~~~iv~hr~s~l~a~~-----------------~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~  586 (910)
T KOG1539|consen  527 LKKSLRLG---SSITGIVYHRVSDLLAIA-----------------LDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSP  586 (910)
T ss_pred             eeeeeccC---CCcceeeeeehhhhhhhh-----------------cCceeEEEEEchhhhhhHHhhccccceeeeEeCC
Confidence            11111111   245556666543333321                 0123788888876543 33344456789999999


Q ss_pred             CCCEEEEEec
Q 030700          162 DERFLVVCES  171 (173)
Q Consensus       162 dg~~lyv~~~  171 (173)
                      |||+|..+..
T Consensus       587 DgrWlisasm  596 (910)
T KOG1539|consen  587 DGRWLISASM  596 (910)
T ss_pred             CCcEEEEeec
Confidence            9999988764

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=97.05  E-value=0.02  Score=42.12  Aligned_cols=94  Identities=13%  Similarity=0.130  Sum_probs=59.1

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEc-cCC--cEEEE
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-EEG--VTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~-~~g--~~~~~   85 (173)
                      .+..+.+.++|++......+.|..||+.. .+.+-...+-... ...++|+-.+ |||.... .++++| .+|  ...+.
T Consensus       186 ~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~nV~-SASL~P~k~~-fVaGged~~~~kfDy~TgeEi~~~n  263 (334)
T KOG0278|consen  186 PVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCNVE-SASLHPKKEF-FVAGGEDFKVYKFDYNTGEEIGSYN  263 (334)
T ss_pred             CCcceeeccCCCEEEEecCceeEEeccccccceeeccCccccc-cccccCCCce-EEecCcceEEEEEeccCCceeeecc
Confidence            35667788899888777777788888643 2222222222233 4456788777 9987664 477777 466  23221


Q ss_pred             eccCCccccCCccEEEcCCCcEEEE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      ...    +.-.+.+.++|||.+|.+
T Consensus       264 kgh----~gpVhcVrFSPdGE~yAs  284 (334)
T KOG0278|consen  264 KGH----FGPVHCVRFSPDGELYAS  284 (334)
T ss_pred             cCC----CCceEEEEECCCCceeec
Confidence            222    234578999999999997

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=97.01  E-value=0.041  Score=43.04  Aligned_cols=100  Identities=17%  Similarity=0.239  Sum_probs=58.6

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEe-ccCCccccCC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS-QFNGSQLRFA   96 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~-~~~~~~~~~~   96 (173)
                      ++.+|++..++.++.++. +|+. .|........ .+++ .++++ |++.....++.++. +|...... ...+.....|
T Consensus       241 ~~~vy~~~~~g~l~a~d~~tG~~-~W~~~~~~~~-~p~~-~~~~v-yv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp  316 (377)
T TIGR03300       241 GGQVYAVSYQGRVAALDLRSGRV-LWKRDASSYQ-GPAV-DDNRL-YVTDADGVVVALDRRSGSELWKNDELKYRQLTAP  316 (377)
T ss_pred             CCEEEEEEcCCEEEEEECCCCcE-EEeeccCCcc-CceE-eCCEE-EEECCCCeEEEEECCCCcEEEccccccCCccccC
Confidence            568888888889999996 5543 3322222333 4444 34455 88876667888885 66322221 2222211222


Q ss_pred             ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                         .+. ++.+|+.+.                  +|.|+.+|+++|+..
T Consensus       317 ---~i~-g~~l~~~~~------------------~G~l~~~d~~tG~~~  343 (377)
T TIGR03300       317 ---AVV-GGYLVVGDF------------------EGYLHWLSREDGSFV  343 (377)
T ss_pred             ---EEE-CCEEEEEeC------------------CCEEEEEECCCCCEE
Confidence               332 457888753                  378999998877653

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.93  E-value=0.09  Score=40.67  Aligned_cols=94  Identities=14%  Similarity=0.119  Sum_probs=60.1

Q ss_pred             cceEEEcCCCCEEEEc--CCCeEEEEcCC-CcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC---cEE
Q 030700           12 PEDVSVDGNGVLYTAT--GDGWIKRMHPN-GTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTV   83 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~--~~~~i~~~~~~-g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g---~~~   83 (173)
                      ...+.+.++|..+++.  .+..|+.|+++ |....+. ...+... -|.++|||+. ++|..-++++++. .+.   .+.
T Consensus       198 Vtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~s-lLkwSPdgd~-lfaAt~davfrlw~e~q~wt~er  275 (445)
T KOG2139|consen  198 VTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFS-LLKWSPDGDV-LFAATCDAVFRLWQENQSWTKER  275 (445)
T ss_pred             eeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCcee-eEEEcCCCCE-EEEecccceeeeehhcccceecc
Confidence            4568888899888766  55678899875 4444443 2233343 5789999999 6666677888887 333   222


Q ss_pred             EEeccCCccccCCccEEEcCCCc-EEEEeC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVS  112 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~  112 (173)
                      ..- ..    .+.-.-..+|.|+ +.++..
T Consensus       276 w~l-gs----grvqtacWspcGsfLLf~~s  300 (445)
T KOG2139|consen  276 WIL-GS----GRVQTACWSPCGSFLLFACS  300 (445)
T ss_pred             eec-cC----CceeeeeecCCCCEEEEEEc
Confidence            211 11    2566778999996 555543

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=96.91  E-value=0.087  Score=41.92  Aligned_cols=138  Identities=14%  Similarity=0.162  Sum_probs=75.7

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEc-CC-CcEEEec-------cccCccccceEEccCCcEEEEEeCCCeEEEEc-c-
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMH-PN-GTWEDWH-------QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E-   78 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~-g~~~~~~-------~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~-   78 (173)
                      ...++-|+|.|.|..+. .++.+..|+ .+ +....+.       .....|...+..++.-.+..++...+..+++. . 
T Consensus       361 ~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~  440 (524)
T KOG0273|consen  361 EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVE  440 (524)
T ss_pred             ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEcc
Confidence            34567788877777555 555555554 12 2111111       11122321222233322213333344455544 2 


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcce
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG  156 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~g  156 (173)
                      .|  ...+.+.-     .-..+++++|+|+...+                 +..++.|..++..++++-.--.+-...+.
T Consensus       441 ~gv~i~~f~kH~-----~pVysvafS~~g~ylAs-----------------Gs~dg~V~iws~~~~~l~~s~~~~~~Ife  498 (524)
T KOG0273|consen  441 SGVPIHTLMKHQ-----EPVYSVAFSPNGRYLAS-----------------GSLDGCVHIWSTKTGKLVKSYQGTGGIFE  498 (524)
T ss_pred             CCceeEeeccCC-----CceEEEEecCCCcEEEe-----------------cCCCCeeEeccccchheeEeecCCCeEEE
Confidence            55  33343321     24578999999986665                 23457888888877776555555556778


Q ss_pred             EEEccCCCEEEEEe
Q 030700          157 VALSEDERFLVVCE  170 (173)
Q Consensus       157 i~~~~dg~~lyv~~  170 (173)
                      ++|+.+|..|-++.
T Consensus       499 l~Wn~~G~kl~~~~  512 (524)
T KOG0273|consen  499 LCWNAAGDKLGACA  512 (524)
T ss_pred             EEEcCCCCEEEEEe
Confidence            99999998776654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.91  E-value=0.0068  Score=46.56  Aligned_cols=153  Identities=13%  Similarity=0.105  Sum_probs=79.5

Q ss_pred             CccCCcceEEEcCCC-CEEEEc-CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--
Q 030700            7 GIVNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--   80 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--   80 (173)
                      |--++..++|-+|+. ..+++. .+|.|..||...+  ...+....+... ||+++. +.++++.+ +..+-++..+|  
T Consensus        64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~-Gi~v~~-~~~~tvgd-DKtvK~wk~~~~p  140 (433)
T KOG0268|consen   64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVR-GICVTQ-TSFFTVGD-DKTVKQWKIDGPP  140 (433)
T ss_pred             ccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCcee-eEEecc-cceEEecC-CcceeeeeccCCc
Confidence            334667788888866 444444 8899999996553  233444556677 999987 45534443 33333333333  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCC---------------cCcc--------cc-eeeecccCCCceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTK---------------FTPA--------EY-YLDLVSGEPHGVLLK  136 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~---------------~~~~--------~~-~~~~~~~~~~~~v~~  136 (173)
                      ...+...      ....+|.-...+.+++|++..-               ++.+        +. ...+.....+++|+.
T Consensus       141 ~~tilg~------s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvL  214 (433)
T KOG0268|consen  141 LHTILGK------SVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVL  214 (433)
T ss_pred             ceeeecc------ccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEE
Confidence            2211110      1122232222333444332110               0000        00 011222346789999


Q ss_pred             EcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          137 YDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       137 ~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      ||+.++.+..-..--..+|+|+|+| +.+.+++
T Consensus       215 yD~R~~~Pl~KVi~~mRTN~IswnP-eafnF~~  246 (433)
T KOG0268|consen  215 YDLRQASPLKKVILTMRTNTICWNP-EAFNFVA  246 (433)
T ss_pred             EecccCCccceeeeeccccceecCc-cccceee
Confidence            9998776433333346689999999 4455554

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.91  E-value=0.055  Score=39.38  Aligned_cols=145  Identities=20%  Similarity=0.230  Sum_probs=71.9

Q ss_pred             eecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcC--CCc------EEEeccc-cCccccceEEccCCcEEEEEeCCCeE
Q 030700            3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP--NGT------WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGL   73 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~--~g~------~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i   73 (173)
                      +++.+ ..+-.-|+..|+|.||....+ .+++..+  ++.      -.++... -..=. .|.+++.|-+ |.......+
T Consensus        28 ~iG~g-w~~~~~i~~~P~g~lY~I~~~-~lY~~~~~~~~~~~~~~~~~~Ig~g~W~~F~-~i~~d~~G~L-YaV~~~G~l  103 (229)
T PF14517_consen   28 TIGSG-WNNFRDIAAGPNGRLYAIRND-GLYRGSPSSSGGNTWDSGSKQIGDGGWNSFK-FIFFDPTGVL-YAVTPDGKL  103 (229)
T ss_dssp             EEESS--TT-SEEEE-TTS-EEEEETT-EEEEES---STT--HHHH-EEEE-S-GGG-S-EEEE-TTS-E-EEEETT-EE
T ss_pred             hcCcc-ccccceEEEcCCceEEEEECC-ceEEecCCccCcccccccCcccccCccccee-EEEecCCccE-EEeccccce
Confidence            45555 566778899999999987744 7888841  221      1122122 11234 7889999988 876655467


Q ss_pred             EEEcc--CC-cEE---EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEE-cCCCC----
Q 030700           74 LKVSE--EG-VTV---LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-DPSTN----  142 (173)
Q Consensus        74 ~~~~~--~g-~~~---~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d~~~~----  142 (173)
                      ++...  ++ ...   ....+-...-+....+-.+++|.||+.+                  +++++++. .|..+    
T Consensus       104 yR~~~~~~~~~~W~~~~~~~iG~~GW~~f~~vfa~~~GvLY~i~------------------~dg~~~~~~~p~~~~~~W  165 (229)
T PF14517_consen  104 YRHPRPTNGSDNWIGGSGKKIGGTGWNDFDAVFAGPNGVLYAIT------------------PDGRLYRRYRPDGGSDRW  165 (229)
T ss_dssp             EEES---STT--HHH-HSEEEE-SSGGGEEEEEE-TTS-EEEEE------------------TTE-EEEE---SSTT--H
T ss_pred             eeccCCCccCcchhhccceecccCCCccceEEEeCCCccEEEEc------------------CCCceEEeCCCCCCCCcc
Confidence            77762  22 111   1111111112346778999999999985                  33677776 34322    


Q ss_pred             --eeEEe-eccccCcceEEEccCCCEEEEEe
Q 030700          143 --QTSLV-LDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       143 --~~~~~-~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                        ...++ ..+.....-|.++|++. ||..+
T Consensus       166 ~~~s~~v~~~gw~~~~~i~~~~~g~-L~~V~  195 (229)
T PF14517_consen  166 LSGSGLVGGGGWDSFHFIFFSPDGN-LWAVK  195 (229)
T ss_dssp             HHH-EEEESSSGGGEEEEEE-TTS--EEEE-
T ss_pred             ccccceeccCCcccceEEeeCCCCc-EEEEe
Confidence              11122 23445567788899885 66554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.90  E-value=0.083  Score=43.71  Aligned_cols=146  Identities=18%  Similarity=0.196  Sum_probs=85.0

Q ss_pred             CCcceEEEcCCCCEEE-Ec-CCCeEEEEcCCCcEEEe--c--cccCccccceEEccCCcEEEEEeCC-CeEEEEccC-C-
Q 030700           10 NHPEDVSVDGNGVLYT-AT-GDGWIKRMHPNGTWEDW--H--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEE-G-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~-~~~~i~~~~~~g~~~~~--~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~-g-   80 (173)
                      +.-.+-+..|+|.+.. +. .+-+||++.+++.+...  .  .....+...+.|.-|+++++++... ..+..+..+ . 
T Consensus       383 ~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps  462 (691)
T KOG2048|consen  383 ENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPS  462 (691)
T ss_pred             cceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcc
Confidence            4456677888998774 33 67789999887743321  1  1112222256666666555555422 234444432 2 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC-cceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVAL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-p~gi~~  159 (173)
                      ...+............+.|+.+++|+.+++-.                 ..+.|+.|+.++++.+.+...+.. ...+++
T Consensus       463 ~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~-----------------t~g~I~v~nl~~~~~~~l~~rln~~vTa~~~  525 (691)
T KOG2048|consen  463 FKELKSIQSQAKCPSISRLVVSSDGNYIAAIS-----------------TRGQIFVYNLETLESHLLKVRLNIDVTAAAF  525 (691)
T ss_pred             hhhhhccccccCCCcceeEEEcCCCCEEEEEe-----------------ccceEEEEEcccceeecchhccCcceeeeec
Confidence            33332222222235678899999998555432                 237899999998877666644433 245677


Q ss_pred             cc-CCCEEEEEecC
Q 030700          160 SE-DERFLVVCESW  172 (173)
Q Consensus       160 ~~-dg~~lyv~~~~  172 (173)
                      +| +...|.|+.++
T Consensus       526 ~~~~~~~lvvats~  539 (691)
T KOG2048|consen  526 SPFVRNRLVVATSN  539 (691)
T ss_pred             cccccCcEEEEecC
Confidence            74 55567777653

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.88  E-value=0.058  Score=46.22  Aligned_cols=140  Identities=14%  Similarity=0.234  Sum_probs=80.1

Q ss_pred             CcceEEEcC-CCCEEEEc--CCCeEEEEcC-CCcEE-EeccccCccccceEEc------cCCcEEEEEeCCCeEEEEcc-
Q 030700           11 HPEDVSVDG-NGVLYTAT--GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTT------KENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~~~--~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~------~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      .|.-+..+. +..+.+-+  ....||++|. .|+++ .|...-..|...++-+      -.... |++-..++++++|+ 
T Consensus       482 ~P~k~mL~~~d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~t-flGls~n~lfriDpR  560 (794)
T PF08553_consen  482 TPKKAMLHDQDRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQT-FLGLSDNSLFRIDPR  560 (794)
T ss_pred             CcchhhhhccccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCce-EEEECCCceEEeccC
Confidence            344444444 44666655  4568999996 56654 3432221211122221      12356 77777888999995 


Q ss_pred             -CCcEEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-c
Q 030700           79 -EGVTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-N  155 (173)
Q Consensus        79 -~g~~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~  155 (173)
                       .|...+... ..-...+....++.+.+|.|-|++.                  .|.|-.||.-+.+......++..| .
T Consensus       561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G~iavgs~------------------~G~IRLyd~~g~~AKT~lp~lG~pI~  622 (794)
T PF08553_consen  561 LSGNKLVDSQSKQYSSKNNFSCFATTEDGYIAVGSN------------------KGDIRLYDRLGKRAKTALPGLGDPII  622 (794)
T ss_pred             CCCCceeeccccccccCCCceEEEecCCceEEEEeC------------------CCcEEeecccchhhhhcCCCCCCCee
Confidence             452111111 1111223456688889999988853                  377777885433333334455455 6


Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      ||.++.||++|..|
T Consensus       623 ~iDvt~DGkwilaT  636 (794)
T PF08553_consen  623 GIDVTADGKWILAT  636 (794)
T ss_pred             EEEecCCCcEEEEe
Confidence            99999999988764

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=96.83  E-value=0.12  Score=38.40  Aligned_cols=106  Identities=13%  Similarity=0.173  Sum_probs=67.7

Q ss_pred             eecCCccCCcceEEEcCC-CCEEEEc-CCCeEEEEcCC-Cc-E--EEeccc--cCccccceEEccCCcEEEEEeCCCeEE
Q 030700            3 KLGEGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPN-GT-W--EDWHQV--GSQSLLGLTTTKENNVIIVCDSQQGLL   74 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~-g~-~--~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~~i~   74 (173)
                      +..++-...-..+|++|. |.++.+. .+..|..++.. +. +  ..+.+.  -.... .++++|.|++ +.+.......
T Consensus         8 ~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVR-svAwsp~g~~-La~aSFD~t~   85 (312)
T KOG0645|consen    8 QKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVR-SVAWSPHGRY-LASASFDATV   85 (312)
T ss_pred             EeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheee-eeeecCCCcE-EEEeeccceE
Confidence            444555566788999996 8877665 56666667654 32 2  122221  22456 8999999998 6666666666


Q ss_pred             EEcc--CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030700           75 KVSE--EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        75 ~~~~--~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      .+..  ++ ++-+. .++|.. +-.-.++++++|+++.|+.
T Consensus        86 ~Iw~k~~~efecv~-~lEGHE-nEVK~Vaws~sG~~LATCS  124 (312)
T KOG0645|consen   86 VIWKKEDGEFECVA-TLEGHE-NEVKCVAWSASGNYLATCS  124 (312)
T ss_pred             EEeecCCCceeEEe-eeeccc-cceeEEEEcCCCCEEEEee
Confidence            6653  45 55543 334432 4456789999999999864

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.83  E-value=0.034  Score=42.33  Aligned_cols=135  Identities=16%  Similarity=0.137  Sum_probs=73.0

Q ss_pred             cCCcceEEEcCCCC-EEEEcCCCeEEEEc--CCCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC--
Q 030700            9 VNHPEDVSVDGNGV-LYTATGDGWIKRMH--PNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG--   80 (173)
Q Consensus         9 ~~~p~~l~~~~~g~-l~~~~~~~~i~~~~--~~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g--   80 (173)
                      .++..++.|+.++. +.-+..+ ...|+.  +.|+.. .+.......+ ...|.+||.. +++...++.++++.  .+  
T Consensus       306 tkGvt~l~FSrD~SqiLS~sfD-~tvRiHGlKSGK~LKEfrGHsSyvn-~a~ft~dG~~-iisaSsDgtvkvW~~KtteC  382 (508)
T KOG0275|consen  306 TKGVTCLSFSRDNSQILSASFD-QTVRIHGLKSGKCLKEFRGHSSYVN-EATFTDDGHH-IISASSDGTVKVWHGKTTEC  382 (508)
T ss_pred             ccCeeEEEEccCcchhhccccc-ceEEEeccccchhHHHhcCcccccc-ceEEcCCCCe-EEEecCCccEEEecCcchhh
Confidence            34556666766553 3332222 233333  345432 2333444566 7889999998 66656666666663  33  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCC--cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeecc----ccC
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDG----LYF  153 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~----~~~  153 (173)
                      ..++......   ...|.+.+-|..  .+.|++.                  +++++..+.. |++ +-+..+    ..+
T Consensus       383 ~~Tfk~~~~d---~~vnsv~~~PKnpeh~iVCNr------------------sntv~imn~q-GQvVrsfsSGkREgGdF  440 (508)
T KOG0275|consen  383 LSTFKPLGTD---YPVNSVILLPKNPEHFIVCNR------------------SNTVYIMNMQ-GQVVRSFSSGKREGGDF  440 (508)
T ss_pred             hhhccCCCCc---ccceeEEEcCCCCceEEEEcC------------------CCeEEEEecc-ceEEeeeccCCccCCce
Confidence            4444332222   245667777754  3555532                  2578888776 443 322222    111


Q ss_pred             cceEEEccCCCEEEEE
Q 030700          154 ANGVALSEDERFLVVC  169 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~  169 (173)
                       -..++||.|.++|+.
T Consensus       441 -i~~~lSpkGewiYci  455 (508)
T KOG0275|consen  441 -INAILSPKGEWIYCI  455 (508)
T ss_pred             -EEEEecCCCcEEEEE
Confidence             135779999999975

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=96.82  E-value=0.052  Score=43.42  Aligned_cols=93  Identities=15%  Similarity=0.053  Sum_probs=54.2

Q ss_pred             ceEEEcCCCC-EEEEc-CC--CeEEEEcCCCcEE-EeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCC--cE
Q 030700           13 EDVSVDGNGV-LYTAT-GD--GWIKRMHPNGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG--VT   82 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~-~~--~~i~~~~~~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g--~~   82 (173)
                      ...+|.|+|+ |.++. .+  -.||.+|.+++.. ++....+.-. .-.++|||+.++++...   ..|++++.+|  .+
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            4467888884 44544 33  3588888776543 3323233333 45588999876554333   2588889877  44


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      .+.....     ....-.++|||..++-+
T Consensus       320 riT~~~~-----~~~~p~~SpdG~~i~~~  343 (425)
T COG0823         320 RLTFSGG-----GNSNPVWSPDGDKIVFE  343 (425)
T ss_pred             EeeccCC-----CCcCccCCCCCCEEEEE
Confidence            4432221     22256778999755543

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=96.80  E-value=0.046  Score=45.60  Aligned_cols=127  Identities=14%  Similarity=0.156  Sum_probs=82.1

Q ss_pred             EEEcCCCCEEEEcCCCeEEEEc-CCCcE-EEec--cccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC--cEEEEe
Q 030700           15 VSVDGNGVLYTATGDGWIKRMH-PNGTW-EDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG--VTVLVS   86 (173)
Q Consensus        15 l~~~~~g~l~~~~~~~~i~~~~-~~g~~-~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g--~~~~~~   86 (173)
                      ++|+++|...++..+..|..+| .+|+. ....  +...... .+++.+|+..||.+- ..++.++.  +.|  .+.+..
T Consensus        25 ~~~s~nG~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~it-a~~l~~d~~~L~~a~-rs~llrv~~L~tgk~irswKa  102 (775)
T KOG0319|consen   25 VAWSSNGQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEIT-ALALTPDEEVLVTAS-RSQLLRVWSLPTGKLIRSWKA  102 (775)
T ss_pred             eeECCCCCEEEEecCceEEEEEccCCceecccCCccchhhhh-eeeecCCccEEEEee-ccceEEEEEcccchHhHhHhh
Confidence            8999999877777667788887 46665 3322  2234556 888999998856554 44566665  355  332222


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDER  164 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~  164 (173)
                      ... .|   .-.|+++|.|.+..+                 +..++++-.+|-..+.......+++.+ ..+.|.|+-.
T Consensus       103 ~He-~P---vi~ma~~~~g~LlAt-----------------ggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~~  160 (775)
T KOG0319|consen  103 IHE-AP---VITMAFDPTGTLLAT-----------------GGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHWN  160 (775)
T ss_pred             ccC-CC---eEEEEEcCCCceEEe-----------------ccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCccc
Confidence            111 12   245899999876665                 224578888888878887777775444 5678877643

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=96.80  E-value=0.16  Score=39.24  Aligned_cols=106  Identities=11%  Similarity=0.189  Sum_probs=60.3

Q ss_pred             CCEEEEc-----CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC-C--------eEEEEc-cCCcEEE
Q 030700           21 GVLYTAT-----GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-Q--------GLLKVS-EEGVTVL   84 (173)
Q Consensus        21 g~l~~~~-----~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~--------~i~~~~-~~g~~~~   84 (173)
                      .++||.|     ..++++.+|.+ ++..-..+.+-.+  .++++++|+.+|+++.. .        -++.+. ...+...
T Consensus         3 ~rvyV~D~~~~~~~~rv~viD~d~~k~lGmi~~g~~~--~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~   80 (342)
T PF06433_consen    3 HRVYVQDPVFFHMTSRVYVIDADSGKLLGMIDTGFLG--NVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPT   80 (342)
T ss_dssp             TEEEEEE-GGGGSSEEEEEEETTTTEEEEEEEEESSE--EEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEE
T ss_pred             cEEEEECCccccccceEEEEECCCCcEEEEeecccCC--ceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCccc
Confidence            3678777     34688999864 4544444444445  46789999998988743 1        134433 3332222


Q ss_pred             Ee-ccCCc----cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           85 VS-QFNGS----QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        85 ~~-~~~~~----~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      .+ .++.+    ....++.++++.||+ +||.+..                +..+|-.+|.+.+++
T Consensus        81 ~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~T----------------Pa~SVtVVDl~~~kv  130 (342)
T PF06433_consen   81 GEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFT----------------PATSVTVVDLAAKKV  130 (342)
T ss_dssp             EEEEETTS-B--BS--GGGEEE-TTSSEEEEEEES----------------SSEEEEEEETTTTEE
T ss_pred             ceEecCCcchheecccccceEEccCCcEEEEEccC----------------CCCeEEEEECCCCce
Confidence            21 12222    245789999999997 7777532                445777777776554

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.76  E-value=0.097  Score=40.85  Aligned_cols=56  Identities=13%  Similarity=0.139  Sum_probs=35.0

Q ss_pred             ceEEEcCCCCEEEEc-CCCeEEEEc-CCCcE-EEeccccCccccceEEccCCcEEEEEeCC
Q 030700           13 EDVSVDGNGVLYTAT-GDGWIKRMH-PNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ..+++..+|.+..+. .+|.+..|+ |+-.. .......+... .|.|++||++ +++-..
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~-DL~FS~dgk~-lasig~  206 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVK-DLDFSPDGKF-LASIGA  206 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccc-cceeCCCCcE-EEEecC
Confidence            567787787776554 677776666 54332 22233455677 8999999987 544433

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=96.75  E-value=0.12  Score=42.78  Aligned_cols=98  Identities=12%  Similarity=0.054  Sum_probs=61.6

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccC--CcEEEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE--GVTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~--g~~~~~   85 (173)
                      ...|+|+|.++|+||-.+.+|.|..||+ +++... ....++... .++.++.+..+.|.... |++....-  +.-++.
T Consensus        70 rsIE~L~W~e~~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg~IW-siai~p~~~~l~Igcdd-Gvl~~~s~~p~~I~~~  147 (691)
T KOG2048|consen   70 RSIESLAWAEGGRLFSSGLSGSITEWDLHTLKQKYNIDSNGGAIW-SIAINPENTILAIGCDD-GVLYDFSIGPDKITYK  147 (691)
T ss_pred             CceeeEEEccCCeEEeecCCceEEEEecccCceeEEecCCCccee-EEEeCCccceEEeecCC-ceEEEEecCCceEEEE
Confidence            4578999999999998888899999996 555443 333455667 88898877665554323 33333332  222222


Q ss_pred             eccCCccccCCccEEEcCCCc-EEEE
Q 030700           86 SQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      ..+ .++-.+.-.+.++++|. +..+
T Consensus       148 r~l-~rq~sRvLslsw~~~~~~i~~G  172 (691)
T KOG2048|consen  148 RSL-MRQKSRVLSLSWNPTGTKIAGG  172 (691)
T ss_pred             eec-ccccceEEEEEecCCccEEEec
Confidence            222 22224667788889887 4443

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=96.75  E-value=0.0081  Score=31.61  Aligned_cols=41  Identities=22%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccCcceEEEcc
Q 030700          105 GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE  161 (173)
Q Consensus       105 G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~p~gi~~~~  161 (173)
                      ++||++|...                ..+|.+.+.++...+.+ ...+..|+|||+++
T Consensus         1 ~~iYWtD~~~----------------~~~I~~a~~dGs~~~~vi~~~l~~P~giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQ----------------DPSIERANLDGSNRRTVISDDLQHPEGIAVDW   42 (42)
T ss_dssp             TEEEEEETTT----------------TEEEEEEETTSTSEEEEEESSTSSEEEEEEET
T ss_pred             CEEEEEECCC----------------CcEEEEEECCCCCeEEEEECCCCCcCEEEECC
Confidence            4799998652                12889999886654444 45699999999864

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF14517 Tachylectin: Tachylectin; PDB: 1TL2_A

Probab=96.69  E-value=0.015  Score=42.24  Aligned_cols=116  Identities=24%  Similarity=0.335  Sum_probs=58.6

Q ss_pred             eecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcC--CC--cE-----EEecccc-CccccceEEccCCcEEEEEeCCCe
Q 030700            3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP--NG--TW-----EDWHQVG-SQSLLGLTTTKENNVIIVCDSQQG   72 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~--~g--~~-----~~~~~~~-~~p~~gl~~~~~g~l~~v~~~~~~   72 (173)
                      ++..+.-..=..|.+++.|.||....++.++|...  ++  .+     .++.... .... .+-++++|.| |+-.....
T Consensus        74 ~Ig~g~W~~F~~i~~d~~G~LYaV~~~G~lyR~~~~~~~~~~W~~~~~~~iG~~GW~~f~-~vfa~~~GvL-Y~i~~dg~  151 (229)
T PF14517_consen   74 QIGDGGWNSFKFIFFDPTGVLYAVTPDGKLYRHPRPTNGSDNWIGGSGKKIGGTGWNDFD-AVFAGPNGVL-YAITPDGR  151 (229)
T ss_dssp             EEE-S-GGG-SEEEE-TTS-EEEEETT-EEEEES---STT--HHH-HSEEEE-SSGGGEE-EEEE-TTS-E-EEEETTE-
T ss_pred             ccccCcccceeEEEecCCccEEEeccccceeeccCCCccCcchhhccceecccCCCccce-EEEeCCCccE-EEEcCCCc
Confidence            45555222333799999999997777899998863  22  11     1221111 2245 6777889988 87664444


Q ss_pred             EEEEc-cCC-------cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           73 LLKVS-EEG-------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        73 i~~~~-~~g-------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                      +++.. +++       ...+..   +.....+..|...|+|.||.++.                  +|.|||..+.+
T Consensus       152 ~~~~~~p~~~~~~W~~~s~~v~---~~gw~~~~~i~~~~~g~L~~V~~------------------~G~lyr~~~p~  207 (229)
T PF14517_consen  152 LYRRYRPDGGSDRWLSGSGLVG---GGGWDSFHFIFFSPDGNLWAVKS------------------NGKLYRGRPPQ  207 (229)
T ss_dssp             EEEE---SSTT--HHHH-EEEE---SSSGGGEEEEEE-TTS-EEEE-E------------------TTEEEEES---
T ss_pred             eEEeCCCCCCCCccccccceec---cCCcccceEEeeCCCCcEEEEec------------------CCEEeccCCcc
Confidence            55552 322       112211   11123477899999999999842                  37999988764

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=96.66  E-value=0.039  Score=43.00  Aligned_cols=55  Identities=9%  Similarity=-0.002  Sum_probs=37.8

Q ss_pred             ccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEe-ccccCccccceEEccCCcE
Q 030700            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDW-HQVGSQSLLGLTTTKENNV   63 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~-~~~~~~p~~gl~~~~~g~l   63 (173)
                      -.+.+-.++|.+++...++. .+..++.||. .|.+... .+....+. |.++|+-.++
T Consensus       122 h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvq-gvawDpl~qy  179 (434)
T KOG1009|consen  122 HRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQ-GVAWDPLNQY  179 (434)
T ss_pred             cccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccccccccc-eeecchhhhh
Confidence            34567789999988655444 7777888884 5766543 44556788 8888876554

>PLN00181 protein SPA1-RELATED; Provisional

Probab=96.61  E-value=0.41  Score=41.46  Aligned_cols=138  Identities=13%  Similarity=0.079  Sum_probs=71.1

Q ss_pred             CcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEc-cCCcEEEEEeCCCeEEEEcc-CCcEEEE
Q 030700           11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTT-KENNVIIVCDSQQGLLKVSE-EGVTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~-~~g~l~~v~~~~~~i~~~~~-~g~~~~~   85 (173)
                      ...+++++| ++.++++. .++.|..||. ++............. .+.+. ++|+++.++.....|..++. ++...+.
T Consensus       577 ~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~-~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~  655 (793)
T PLN00181        577 RVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANIC-CVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLC  655 (793)
T ss_pred             CEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeE-EEEEeCCCCCEEEEEeCCCeEEEEECCCCCccce
Confidence            356788987 67766544 7788888885 344332222223445 67774 56787444443334554553 3321111


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC------e-eEEeeccccCcceEE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN------Q-TSLVLDGLYFANGVA  158 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~------~-~~~~~~~~~~p~gi~  158 (173)
                      .. .+.. .....+.+. ++..+++..                 .++.|..||...+      . +..+.......+.++
T Consensus       656 ~~-~~h~-~~V~~v~f~-~~~~lvs~s-----------------~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~  715 (793)
T PLN00181        656 TM-IGHS-KTVSYVRFV-DSSTLVSSS-----------------TDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVG  715 (793)
T ss_pred             Ee-cCCC-CCEEEEEEe-CCCEEEEEE-----------------CCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEE
Confidence            11 1110 234556665 555555421                 3356777776422      1 122222233446788


Q ss_pred             EccCCCEEEEE
Q 030700          159 LSEDERFLVVC  169 (173)
Q Consensus       159 ~~~dg~~lyv~  169 (173)
                      |++++++|...
T Consensus       716 ~s~~~~~lasg  726 (793)
T PLN00181        716 LSVSDGYIATG  726 (793)
T ss_pred             EcCCCCEEEEE
Confidence            89888766554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=96.60  E-value=0.22  Score=39.70  Aligned_cols=138  Identities=14%  Similarity=0.109  Sum_probs=80.0

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcC--CCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHP--NGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT   82 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~--~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~   82 (173)
                      .+...+.++.| +++++++. .+|.|.-||.  .+. ...+ .++-... .+.+-+.|.+ +++..++.+-.+|. .|-.
T Consensus       153 tDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~el-nhg~pVe-~vl~lpsgs~-iasAgGn~vkVWDl~~G~q  229 (487)
T KOG0310|consen  153 TDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVEL-NHGCPVE-SVLALPSGSL-IASAGGNSVKVWDLTTGGQ  229 (487)
T ss_pred             cceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEe-cCCCcee-eEEEcCCCCE-EEEcCCCeEEEEEecCCce
Confidence            35567788888 67888877 8888888873  222 2232 2232334 6777788888 77777776666664 3522


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~  161 (173)
                      .+......  ......|++..+++=.++                 ..-++.|-.||..+-++..-+. ++.| -.|+++|
T Consensus       230 ll~~~~~H--~KtVTcL~l~s~~~rLlS-----------------~sLD~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~  289 (487)
T KOG0310|consen  230 LLTSMFNH--NKTVTCLRLASDSTRLLS-----------------GSLDRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSP  289 (487)
T ss_pred             ehhhhhcc--cceEEEEEeecCCceEee-----------------cccccceEEEEccceEEEEeee-cccceeeEEecC
Confidence            22221110  124566888888753333                 1245677777743222211111 3333 3689999


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      |.+++++.
T Consensus       290 dd~t~viG  297 (487)
T KOG0310|consen  290 DDQTVVIG  297 (487)
T ss_pred             CCceEEEe
Confidence            99988874

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.59  E-value=0.18  Score=41.59  Aligned_cols=58  Identities=16%  Similarity=0.227  Sum_probs=36.7

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE--Eecccc--C--------ccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE--DWHQVG--S--------QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~--~~~~~~--~--------~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      +|.||+++..+.|+.+|. +|+..  .-....  .        ... ++++. ++++ |++.....++.+|. +|
T Consensus        69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~r-g~av~-~~~v-~v~t~dg~l~ALDa~TG  140 (527)
T TIGR03075        69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNR-GVALY-DGKV-FFGTLDARLVALDAKTG  140 (527)
T ss_pred             CCEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccc-cceEE-CCEE-EEEcCCCEEEEEECCCC
Confidence            789999988889999995 56432  111100  0        113 44553 4566 88776667999995 77

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.58  E-value=0.012  Score=45.57  Aligned_cols=91  Identities=18%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             ccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeeccc
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG  128 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~  128 (173)
                      ... .+.|+|+|+. .++..++..+++++ +-.+.+.. ..+. .++.-.++.+|||..+++                 +
T Consensus       117 ~Vl-~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~t-~KgH-~~WVlcvawsPDgk~iAS-----------------G  175 (480)
T KOG0271|consen  117 AVL-SVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLFT-CKGH-KNWVLCVAWSPDGKKIAS-----------------G  175 (480)
T ss_pred             cEE-EEEecCCCce-EEecCCCceEEeeccCCCCccee-ecCC-ccEEEEEEECCCcchhhc-----------------c
Confidence            344 8999999998 77777776777664 32222221 1121 267888999999987665                 2


Q ss_pred             CCCceEEEEcCCCCeeE--EeeccccCcceEEEcc
Q 030700          129 EPHGVLLKYDPSTNQTS--LVLDGLYFANGVALSE  161 (173)
Q Consensus       129 ~~~~~v~~~d~~~~~~~--~~~~~~~~p~gi~~~~  161 (173)
                      ..+|.|..+||++|+..  .+...-...++++|-|
T Consensus       176 ~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep  210 (480)
T KOG0271|consen  176 SKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEP  210 (480)
T ss_pred             ccCCeEEEecCCCCCcccccccCcccceeEEeecc
Confidence            35689999999987532  2233346667788754

>PRK13616 lipoprotein LpqB; Provisional

Probab=96.58  E-value=0.33  Score=40.66  Aligned_cols=100  Identities=8%  Similarity=0.023  Sum_probs=52.3

Q ss_pred             cCCcceEEEcCCCC--EEEE-------cCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-c
Q 030700            9 VNHPEDVSVDGNGV--LYTA-------TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E   78 (173)
Q Consensus         9 ~~~p~~l~~~~~g~--l~~~-------~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~   78 (173)
                      ...+..+++.|+|.  .|+.       +....|+..+..+....+.. +..-. ...|+++|+.+|+...+..+.++. .
T Consensus       349 ~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~-g~~~t-~PsWspDG~~lw~v~dg~~~~~v~~~  426 (591)
T PRK13616        349 MGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLE-GHSLT-RPSWSLDADAVWVVVDGNTVVRVIRD  426 (591)
T ss_pred             ccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeec-CCCCC-CceECCCCCceEEEecCcceEEEecc
Confidence            34567888999884  3443       12346777765554443322 22233 566999976556654343344443 2


Q ss_pred             CC-cEEEEeccCCc-c----ccCCccEEEcCCCc-EEEE
Q 030700           79 EG-VTVLVSQFNGS-Q----LRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        79 ~g-~~~~~~~~~~~-~----~~~~~~l~~~~dG~-~~v~  110 (173)
                      ++ -+......++. .    ...+..+.++|||. +.+.
T Consensus       427 ~~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i  465 (591)
T PRK13616        427 PATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMI  465 (591)
T ss_pred             CCCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEE
Confidence            22 11111111110 0    13588899999995 5443

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=96.57  E-value=0.21  Score=38.59  Aligned_cols=116  Identities=15%  Similarity=0.129  Sum_probs=69.5

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cC-CcEEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EE-GVTVL   84 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~-g~~~~   84 (173)
                      ...++.|..+|.+.++. ..|.|+.+.. +|... ++..+..... =+.++|.+++ +.+...++.+.++  +. +...+
T Consensus       108 SVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~die-Wl~WHp~a~i-llAG~~DGsvWmw~ip~~~~~kv  185 (399)
T KOG0296|consen  108 SVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIE-WLKWHPRAHI-LLAGSTDGSVWMWQIPSQALCKV  185 (399)
T ss_pred             ceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceE-EEEecccccE-EEeecCCCcEEEEECCCcceeeE
Confidence            34567788888888665 7888887764 34332 2222343333 4677898888 5555555554444  34 33333


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD  149 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  149 (173)
                      .   .|.. ...+.-.+.|||+-.++-                 ..+|+|..+++.++++.....
T Consensus       186 ~---~Gh~-~~ct~G~f~pdGKr~~tg-----------------y~dgti~~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  186 M---SGHN-SPCTCGEFIPDGKRILTG-----------------YDDGTIIVWNPKTGQPLHKIT  229 (399)
T ss_pred             e---cCCC-CCcccccccCCCceEEEE-----------------ecCceEEEEecCCCceeEEec
Confidence            3   2221 234556778899755542                 135899999999987655544

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=96.54  E-value=0.04  Score=44.21  Aligned_cols=105  Identities=14%  Similarity=0.170  Sum_probs=62.9

Q ss_pred             eEEEcCC-CCEEEEc-CCCeEEEEcCCCcEEEe--ccccCccccceEEccCCcEEEEEeCCC-eEEEEccCC---cEEEE
Q 030700           14 DVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG---VTVLV   85 (173)
Q Consensus        14 ~l~~~~~-g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g---~~~~~   85 (173)
                      -|.+++. ..|..+. .+|.+..||..|+.-.+  ......|..||+|+|-...|+++-..+ .|+.+|...   ...+.
T Consensus       169 ll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~  248 (673)
T KOG4378|consen  169 LLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLT  248 (673)
T ss_pred             EeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceee
Confidence            3455563 3444333 67888888888864433  233344544999998766657776554 455555322   22222


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                         ...|   ...+++.++|.++++                 +...|+|+-||...
T Consensus       249 ---y~~P---lstvaf~~~G~~L~a-----------------G~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  249 ---YSHP---LSTVAFSECGTYLCA-----------------GNSKGELIAYDMRS  281 (673)
T ss_pred             ---ecCC---cceeeecCCceEEEe-----------------ecCCceEEEEeccc
Confidence               1122   356999999976655                 22458999999874

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=96.51  E-value=0.066  Score=41.37  Aligned_cols=62  Identities=21%  Similarity=0.226  Sum_probs=46.1

Q ss_pred             cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEccCCCEEEEEec
Q 030700           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus        94 ~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      +-...|...+||..+++..-                .+..+..+|++++....+. .++....-+.|||||..++.+..
T Consensus       196 ~pVtsmqwn~dgt~l~tAS~----------------gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~  258 (445)
T KOG2139|consen  196 NPVTSMQWNEDGTILVTASF----------------GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATC  258 (445)
T ss_pred             ceeeEEEEcCCCCEEeeccc----------------CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecc
Confidence            34577888999998887532                3458888999988755554 45556667899999999988754

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.46  E-value=0.1  Score=43.55  Aligned_cols=67  Identities=9%  Similarity=0.103  Sum_probs=44.8

Q ss_pred             cCCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      ......+++.|||.=.+-..+.+++.+|+ +|.. ......-.-.+ .++++.||+. +.+...+..+.++
T Consensus        12 ~hci~d~afkPDGsqL~lAAg~rlliyD~ndG~llqtLKgHKDtVy-cVAys~dGkr-FASG~aDK~VI~W   80 (1081)
T KOG1538|consen   12 EHCINDIAFKPDGTQLILAAGSRLLVYDTSDGTLLQPLKGHKDTVY-CVAYAKDGKR-FASGSADKSVIIW   80 (1081)
T ss_pred             ccchheeEECCCCceEEEecCCEEEEEeCCCcccccccccccceEE-EEEEccCCce-eccCCCceeEEEe
Confidence            45677899999995443345578999996 5654 33333444567 9999999998 7766554433333

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=96.43  E-value=0.15  Score=44.57  Aligned_cols=143  Identities=17%  Similarity=0.221  Sum_probs=91.5

Q ss_pred             cCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcE--EEeccccCccccceEEccCCcEEEEEeCCC--eEEEEcc
Q 030700            5 GEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW--EDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSE   78 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~--~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~~   78 (173)
                      ..| +-.|+++++|- .+.+|++| ....+...+.+|..  ..+......|. .+++++-..++|+++.+.  .+.+...
T Consensus       476 ~~g-~~~~~~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~vl~~~~l~~~r-~~~v~p~~g~~~wtd~~~~~~i~ra~~  553 (877)
T KOG1215|consen  476 GDG-LCIPEGLAVDWIGDNIYWTDEGNCLIEVADLDGSSRKVLVSKDLDLPR-SIAVDPEKGLMFWTDWGQPPRIERASL  553 (877)
T ss_pred             ccC-ccccCcEEEEeccCCceecccCCceeEEEEccCCceeEEEecCCCCcc-ceeeccccCeeEEecCCCCchhhhhcC
Confidence            344 78899999998 67999999 55566666666643  22223336788 999999766769998774  3555556


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE-EeeccccCc
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFA  154 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~p  154 (173)
                      +|  .+.+...-    ...|+++++|- +..+|++|....                ..+..++.++..-+ ........|
T Consensus       554 dg~~~~~l~~~~----~~~p~glt~d~~~~~~yw~d~~~~----------------~~i~~~~~~g~~r~~~~~~~~~~p  613 (877)
T KOG1215|consen  554 DGSERAVLVTNG----ILWPNGLTIDYETDRLYWADAKLD----------------YTIESANMDGQNRRVVDSEDLPHP  613 (877)
T ss_pred             CCCCceEEEeCC----ccCCCcceEEeecceeEEEcccCC----------------cceeeeecCCCceEEeccccCCCc
Confidence            77  44443221    36899999997 567999986522                24555555432222 222346677


Q ss_pred             ceEEEccCCCEEEEEec
Q 030700          155 NGVALSEDERFLVVCES  171 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~  171 (173)
                      .+++.-.+  ++|+++-
T Consensus       614 ~~~~~~~~--~iyw~d~  628 (877)
T KOG1215|consen  614 FGLSVFED--YIYWTDW  628 (877)
T ss_pred             eEEEEecc--eeEEeec
Confidence            77776544  4776653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=96.43  E-value=0.13  Score=39.28  Aligned_cols=82  Identities=11%  Similarity=0.025  Sum_probs=43.8

Q ss_pred             CCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCe--EEEE--ccCC-cEEEEeccCCcc-ccCCccEE
Q 030700           28 GDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQG--LLKV--SEEG-VTVLVSQFNGSQ-LRFANDVI  100 (173)
Q Consensus        28 ~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~--i~~~--~~~g-~~~~~~~~~~~~-~~~~~~l~  100 (173)
                      .+..|.-|+..|+... +......-+ ..+++|+||++.+|.....  ++.+  ..+| ++.+...+.-+. ......++
T Consensus       207 ~dt~i~lw~lkGq~L~~idtnq~~n~-~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~a  285 (420)
T KOG2096|consen  207 LDTKICLWDLKGQLLQSIDTNQSSNY-DAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAA  285 (420)
T ss_pred             CCCcEEEEecCCceeeeecccccccc-ceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeee
Confidence            5567788887787554 333333445 6788999999656554332  3322  2577 554443322110 12345556


Q ss_pred             EcCCCcEEEE
Q 030700          101 EASDGSLYFT  110 (173)
Q Consensus       101 ~~~dG~~~v~  110 (173)
                      ++++.+-.+|
T Consensus       286 Fsn~S~r~vt  295 (420)
T KOG2096|consen  286 FSNSSTRAVT  295 (420)
T ss_pred             eCCCcceeEE
Confidence            6665543333

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=96.42  E-value=0.12  Score=43.05  Aligned_cols=73  Identities=14%  Similarity=0.236  Sum_probs=54.4

Q ss_pred             CCccCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030700            6 EGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG   80 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g   80 (173)
                      .|-....+||++-+++.+.-++.+|.|.+|+.+|.. .+...+..... .+....++.+ +++..+++.++++..+
T Consensus       176 ~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vY-sis~~~~~~~-Ivs~gEDrtlriW~~~  249 (745)
T KOG0301|consen  176 SGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVY-SISMALSDGL-IVSTGEDRTLRIWKKD  249 (745)
T ss_pred             ccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccceEEE-EEEecCCCCe-EEEecCCceEEEeecC
Confidence            344566789999999888888899999999987764 45555556667 7775556667 7777777888888655

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=96.42  E-value=0.011  Score=44.86  Aligned_cols=139  Identities=14%  Similarity=0.187  Sum_probs=80.8

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEEec-----cc---cCccccceEEccCCcEEEEEeCCCeEEEEc--
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWEDWH-----QV---GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~~~-----~~---~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--   77 (173)
                      ..+|+-.|+|+|...++. -+|.|..|+ .+|++.+-.     +.   +..+.++|.|++|..+ +.+...+|-+.++  
T Consensus       214 Sh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEM-lAsGsqDGkIKvWri  292 (508)
T KOG0275|consen  214 SHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEM-LASGSQDGKIKVWRI  292 (508)
T ss_pred             cchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHH-hhccCcCCcEEEEEE
Confidence            679999999999777666 789999998 567654311     11   1223338888888877 5554444544444  


Q ss_pred             cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCc
Q 030700           78 EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFA  154 (173)
Q Consensus        78 ~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p  154 (173)
                      .+|  .+.+..-. .   .....+.++.|+.-..+..                 -+..+-..-.++|+. ..+.......
T Consensus       293 ~tG~ClRrFdrAH-t---kGvt~l~FSrD~SqiLS~s-----------------fD~tvRiHGlKSGK~LKEfrGHsSyv  351 (508)
T KOG0275|consen  293 ETGQCLRRFDRAH-T---KGVTCLSFSRDNSQILSAS-----------------FDQTVRIHGLKSGKCLKEFRGHSSYV  351 (508)
T ss_pred             ecchHHHHhhhhh-c---cCeeEEEEccCcchhhccc-----------------ccceEEEeccccchhHHHhcCccccc
Confidence            345  44443211 1   2456788888876444321                 112233333334432 2333345677


Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      |...|++||..+.-+.
T Consensus       352 n~a~ft~dG~~iisaS  367 (508)
T KOG0275|consen  352 NEATFTDDGHHIISAS  367 (508)
T ss_pred             cceEEcCCCCeEEEec
Confidence            8888888888765543

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=96.36  E-value=0.28  Score=38.35  Aligned_cols=135  Identities=11%  Similarity=0.109  Sum_probs=75.3

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCCCcEE--EeccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CCcEEEEe
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EGVTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g~~~~~~   86 (173)
                      .-++.|.|+|.-.++. .+..+..||++.+..  .....-.+.. .++++|||+. +++...++ |...++ .|.. +.+
T Consensus       118 Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVl-cvawsPDgk~-iASG~~dg~I~lwdpktg~~-~g~  194 (480)
T KOG0271|consen  118 VLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVL-CVAWSPDGKK-IASGSKDGSIRLWDPKTGQQ-IGR  194 (480)
T ss_pred             EEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEE-EEEECCCcch-hhccccCCeEEEecCCCCCc-ccc
Confidence            3467888988766665 666777788765432  2223345677 9999999998 65544444 555554 4421 112


Q ss_pred             ccCCccccCCccEEEcC-----CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC-cceEEEc
Q 030700           87 QFNGSQLRFANDVIEAS-----DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALS  160 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~-----dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-p~gi~~~  160 (173)
                      .+.+.. .+..+|++.|     ..+.+++                 .+.+|.+..+|...+.......+... ..-+.|.
T Consensus       195 ~l~gH~-K~It~Lawep~hl~p~~r~las-----------------~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwG  256 (480)
T KOG0271|consen  195 ALRGHK-KWITALAWEPLHLVPPCRRLAS-----------------SSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWG  256 (480)
T ss_pred             cccCcc-cceeEEeecccccCCCccceec-----------------ccCCCCEEEEEccCceEEEEeccCccceEEEEEc
Confidence            222211 2445555554     3343333                 23457788888775655544544333 3456665


Q ss_pred             cCCCEEEE
Q 030700          161 EDERFLVV  168 (173)
Q Consensus       161 ~dg~~lyv  168 (173)
                      .+| .+|-
T Consensus       257 G~g-liyS  263 (480)
T KOG0271|consen  257 GEG-LIYS  263 (480)
T ss_pred             CCc-eEEe
Confidence            554 4443

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.31  E-value=0.3  Score=39.01  Aligned_cols=125  Identities=20%  Similarity=0.179  Sum_probs=56.4

Q ss_pred             CeEEEEcCC-CcEEEeccc---cCccccceEEc--cCCcEEEEE-eCCCeEEEEcc--CC---cEEEEeccC----Cc--
Q 030700           30 GWIKRMHPN-GTWEDWHQV---GSQSLLGLTTT--KENNVIIVC-DSQQGLLKVSE--EG---VTVLVSQFN----GS--   91 (173)
Q Consensus        30 ~~i~~~~~~-g~~~~~~~~---~~~p~~gl~~~--~~g~l~~v~-~~~~~i~~~~~--~g---~~~~~~~~~----~~--   91 (173)
                      .+++.||.. .+.....+.   +..|. -+.|.  |+...-|+. .-.+.|+++..  +|   .+.+.+...    +.  
T Consensus       222 ~~l~vWD~~~r~~~Q~idLg~~g~~pL-EvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l  300 (461)
T PF05694_consen  222 HSLHVWDWSTRKLLQTIDLGEEGQMPL-EVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL  300 (461)
T ss_dssp             -EEEEEETTTTEEEEEEES-TTEEEEE-EEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred             CeEEEEECCCCcEeeEEecCCCCCceE-EEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence            457788843 444433332   24566 66665  333443443 33456777663  45   444444321    11  


Q ss_pred             -cc--------cCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeec----c------
Q 030700           92 -QL--------RFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLD----G------  150 (173)
Q Consensus        92 -~~--------~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~----~------  150 (173)
                       .+        .-+.+|.++-|.+ |||++..                 .|.|..||-.. ..++++.+    +      
T Consensus       301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~-----------------~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~  363 (461)
T PF05694_consen  301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWL-----------------HGDVRQYDISDPFNPKLVGQVFLGGSIRKGD  363 (461)
T ss_dssp             -GGGGGG-EE------EEE-TTS-EEEEEETT-----------------TTEEEEEE-SSTTS-EEEEEEE-BTTTT-B-
T ss_pred             cccccccccCCCceEeEEEccCCCEEEEEccc-----------------CCcEEEEecCCCCCCcEEeEEEECcEeccCC
Confidence             11        3578999999876 8998643                 35666666431 22322221    1      


Q ss_pred             ---------ccCcceEEEccCCCEEEEEecC
Q 030700          151 ---------LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       151 ---------~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                               ...|+=|.+|-||++||||+|.
T Consensus       364 ~~~v~g~~l~GgPqMvqlS~DGkRlYvTnSL  394 (461)
T PF05694_consen  364 HPVVKGKRLRGGPQMVQLSLDGKRLYVTNSL  394 (461)
T ss_dssp             -TTS------S----EEE-TTSSEEEEE---
T ss_pred             CccccccccCCCCCeEEEccCCeEEEEEeec
Confidence                     1346679999999999999873

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=96.30  E-value=0.031  Score=43.10  Aligned_cols=139  Identities=9%  Similarity=0.066  Sum_probs=79.8

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEE
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVL   84 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~   84 (173)
                      .+...++-+.| ...+..+. .++.|..+|. .+...........++ +|+|+|++-.+.+++....++..|.-. .+.+
T Consensus       187 ~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN-~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~  265 (433)
T KOG0268|consen  187 ADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTN-TICWNPEAFNFVAANEDHNLYTYDMRNLSRPL  265 (433)
T ss_pred             CCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecccc-ceecCccccceeeccccccceehhhhhhcccc
Confidence            34456677777 44566555 7888988884 444333223345788 999999776634555556787777433 2222


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEccC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSED  162 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~d  162 (173)
                       ....+. .+..-++.++|.|.-+++-+                 -+.+|-.|....+..+.+-  ...+...++.||.|
T Consensus       266 -~v~~dh-vsAV~dVdfsptG~Efvsgs-----------------yDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~D  326 (433)
T KOG0268|consen  266 -NVHKDH-VSAVMDVDFSPTGQEFVSGS-----------------YDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMD  326 (433)
T ss_pred             -hhhccc-ceeEEEeccCCCcchhcccc-----------------ccceEEEeecCCCcchhhhhHhhhheeeEEEEecc
Confidence             111111 13457788999998777632                 2244444444333332221  12455667888888


Q ss_pred             CCEEE
Q 030700          163 ERFLV  167 (173)
Q Consensus       163 g~~ly  167 (173)
                      .++++
T Consensus       327 skyi~  331 (433)
T KOG0268|consen  327 SKYII  331 (433)
T ss_pred             ccEEE
Confidence            87654

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=96.27  E-value=0.029  Score=28.97  Aligned_cols=30  Identities=23%  Similarity=0.194  Sum_probs=22.6

Q ss_pred             CceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700          131 HGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus       131 ~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      +++|..+|+.+++..........|.+|+|+
T Consensus        13 ~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276        13 SNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            368999999877665555556889999875

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.24  E-value=0.11  Score=39.58  Aligned_cols=131  Identities=11%  Similarity=0.031  Sum_probs=70.1

Q ss_pred             CCCCEEEEc-CCCeEEEEcC-CCcEEEe------ccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEec
Q 030700           19 GNGVLYTAT-GDGWIKRMHP-NGTWEDW------HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQ   87 (173)
Q Consensus        19 ~~g~l~~~~-~~~~i~~~~~-~g~~~~~------~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~   87 (173)
                      |+..||.+. .+.-|+-||. +|++...      .++..... .++|++||.. ++|.....|..++  ..| ...+...
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAh-sL~Fs~DGeq-lfaGykrcirvFdt~RpGr~c~vy~t  198 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAH-SLQFSPDGEQ-LFAGYKRCIRVFDTSRPGRDCPVYTT  198 (406)
T ss_pred             CccceeeeccccCceeeeeccccccccchhhhhhHHhhhhhe-eEEecCCCCe-EeecccceEEEeeccCCCCCCcchhh
Confidence            455666444 5667888884 6764321      23344677 9999999998 6665555555555  245 2222221


Q ss_pred             -cCCc--cccCCccEEEcC-CCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEcc
Q 030700           88 -FNGS--QLRFANDVIEAS-DGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSE  161 (173)
Q Consensus        88 -~~~~--~~~~~~~l~~~~-dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~  161 (173)
                       ..++  +..-..-++++| +-.++. ....+.                -.||+.+  .+.+-.+.. .-....-++|.+
T Consensus       199 ~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~----------------~giy~~~--~~~pl~llggh~gGvThL~~~e  260 (406)
T KOG2919|consen  199 VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQR----------------VGIYNDD--GRRPLQLLGGHGGGVTHLQWCE  260 (406)
T ss_pred             hhcccccccceeeeeeccCCCCcceeeecccce----------------eeeEecC--CCCceeeecccCCCeeeEEecc
Confidence             1111  112345567777 333333 322211                1344433  344433333 245566788899


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      ||..||+.
T Consensus       261 dGn~lfsG  268 (406)
T KOG2919|consen  261 DGNKLFSG  268 (406)
T ss_pred             CcCeeccc
Confidence            99888763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=96.24  E-value=0.28  Score=35.42  Aligned_cols=130  Identities=15%  Similarity=0.139  Sum_probs=66.2

Q ss_pred             CCCCEEEEcCCCeEEEEc-CCCcEEEe-cccc----CccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCc
Q 030700           19 GNGVLYTATGDGWIKRMH-PNGTWEDW-HQVG----SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGS   91 (173)
Q Consensus        19 ~~g~l~~~~~~~~i~~~~-~~g~~~~~-~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~   91 (173)
                      .++.+|+...++.|+.+| .+|+..-- ....    .... .+....+++.+|++.....++.++. +|...........
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRS-SSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB---SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             cccccccccceeeeEecccCCcceeeeecccccccccccc-ccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            367888887777999999 67764321 1111    1111 1222223455488776778999994 7822222212211


Q ss_pred             cccC--------CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCC
Q 030700           92 QLRF--------ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (173)
Q Consensus        92 ~~~~--------~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg  163 (173)
                      +...        ...+.++ +|.+|++...                  +.++.+|..+++.. +......+.++ ...++
T Consensus       154 ~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~------------------g~~~~~d~~tg~~~-w~~~~~~~~~~-~~~~~  212 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVIS-DGRVYVSSGD------------------GRVVAVDLATGEKL-WSKPISGIYSL-PSVDG  212 (238)
T ss_dssp             -SS--EEEETTEEEEEECC-TTEEEEECCT------------------SSEEEEETTTTEEE-EEECSS-ECEC-EECCC
T ss_pred             CCCcceeeecccccceEEE-CCEEEEEcCC------------------CeEEEEECCCCCEE-EEecCCCccCC-ceeeC
Confidence            1111        1222333 5588888543                  45677788877743 32222222221 23456


Q ss_pred             CEEEEEe
Q 030700          164 RFLVVCE  170 (173)
Q Consensus       164 ~~lyv~~  170 (173)
                      ..||+.+
T Consensus       213 ~~l~~~~  219 (238)
T PF13360_consen  213 GTLYVTS  219 (238)
T ss_dssp             TEEEEEE
T ss_pred             CEEEEEe
Confidence            6777765

...

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=96.23  E-value=0.14  Score=39.51  Aligned_cols=41  Identities=22%  Similarity=0.346  Sum_probs=29.0

Q ss_pred             cCCCceEEEEcCCCCeeEEee-ccccCcceEEEccCCCEEEE
Q 030700          128 GEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFLVV  168 (173)
Q Consensus       128 ~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~dg~~lyv  168 (173)
                      .+.++.|-.+|..++.+-.-. .......+++|+|.|++|+-
T Consensus       310 ~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~S  351 (406)
T KOG0295|consen  310 GSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILS  351 (406)
T ss_pred             ecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEE
Confidence            345677777887777643333 33678889999999998764

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.14  E-value=0.37  Score=35.96  Aligned_cols=108  Identities=14%  Similarity=0.138  Sum_probs=61.4

Q ss_pred             cCCcceEEEcCCCCEEEEc-C--CCeEEEEcC-CCcEEEec--cccCccccceEEccCCcEEEEEeCCCe-EEEEccCCc
Q 030700            9 VNHPEDVSVDGNGVLYTAT-G--DGWIKRMHP-NGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSEEGV   81 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~--~~~i~~~~~-~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~~g~   81 (173)
                      -....||.+..+|.||-+. .  ...|.++++ +|+.....  +..-... ||++-.| ++ |...+..+ .+..|.+-+
T Consensus        44 ~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgE-Git~~~d-~l-~qLTWk~~~~f~yd~~tl  120 (264)
T PF05096_consen   44 TAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGE-GITILGD-KL-YQLTWKEGTGFVYDPNTL  120 (264)
T ss_dssp             T-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EE-EEEEETT-EE-EEEESSSSEEEEEETTTT
T ss_pred             cccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccce-eEEEECC-EE-EEEEecCCeEEEEccccc
Confidence            3566889998899999777 3  346888885 56654332  2234577 8988654 66 77666655 444555543


Q ss_pred             EEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           82 TVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        82 ~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      +.+... +++    --=+|+.+ +..+|.+|++                  .+|+.+||++-
T Consensus       121 ~~~~~~~y~~----EGWGLt~d-g~~Li~SDGS------------------~~L~~~dP~~f  159 (264)
T PF05096_consen  121 KKIGTFPYPG----EGWGLTSD-GKRLIMSDGS------------------SRLYFLDPETF  159 (264)
T ss_dssp             EEEEEEE-SS----S--EEEEC-SSCEEEE-SS------------------SEEEEE-TTT-
T ss_pred             eEEEEEecCC----cceEEEcC-CCEEEEECCc------------------cceEEECCccc
Confidence            333221 111    12346633 2268888765                  58888888754

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=96.12  E-value=0.14  Score=39.98  Aligned_cols=58  Identities=19%  Similarity=0.275  Sum_probs=36.9

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ++.+|+.+.++.++++|. +|+.. .......... +++++ ++++ |+......++.++. +|
T Consensus        65 ~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~-~p~v~-~~~v-~v~~~~g~l~ald~~tG  125 (377)
T TIGR03300        65 GGKVYAADADGTVVALDAETGKRLWRVDLDERLSG-GVGAD-GGLV-FVGTEKGEVIALDAEDG  125 (377)
T ss_pred             CCEEEEECCCCeEEEEEccCCcEeeeecCCCCccc-ceEEc-CCEE-EEEcCCCEEEEEECCCC
Confidence            678999988899999994 67643 1111112223 44443 4455 88766667888885 67

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=96.07  E-value=0.13  Score=40.60  Aligned_cols=57  Identities=19%  Similarity=0.310  Sum_probs=35.6

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEecccc-C-----------c-cccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVG-S-----------Q-SLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~-~-----------~-p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ++.+|+.+.++.++.+|. +|+. .|.... .           . .. ++++ .++++ |+......++.+|. +|
T Consensus        69 ~~~vy~~~~~g~l~ald~~tG~~-~W~~~~~~~~~~~~~~~~~~~~~-~~~v-~~~~v-~v~~~~g~l~ald~~tG  140 (394)
T PRK11138         69 YNKVYAADRAGLVKALDADTGKE-IWSVDLSEKDGWFSKNKSALLSG-GVTV-AGGKV-YIGSEKGQVYALNAEDG  140 (394)
T ss_pred             CCEEEEECCCCeEEEEECCCCcE-eeEEcCCCccccccccccccccc-ccEE-ECCEE-EEEcCCCEEEEEECCCC
Confidence            779999988889999995 5653 221111 0           0 12 3444 34566 88765556888885 67

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=96.03  E-value=0.16  Score=39.77  Aligned_cols=62  Identities=24%  Similarity=0.390  Sum_probs=42.8

Q ss_pred             EcCCCCEEEEcCCCeEEEEcCCCcEEEecccc----CccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           17 VDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        17 ~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      +..+|++|+...+|.|+.+++++....|....    .... +-.+..+|++ |+......++.++. +|
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~-~~~~~~~G~i-~~g~~~g~~y~ld~~~G  131 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLS-GPILGSDGKI-YVGSWDGKLYALDASTG  131 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceecc-CceEEeCCeE-EEecccceEEEEECCCC
Confidence            55689999988888999999866554443221    2334 4444558998 88876655888887 78

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=96.00  E-value=0.39  Score=36.78  Aligned_cols=96  Identities=13%  Similarity=0.060  Sum_probs=52.7

Q ss_pred             ccCCcceEEEcCCCCEEEEcCCCeEEEEcC--CCcEEEe-----ccc---cCccccceEEccCC-cEEEEEeCC-CeEEE
Q 030700            8 IVNHPEDVSVDGNGVLYTATGDGWIKRMHP--NGTWEDW-----HQV---GSQSLLGLTTTKEN-NVIIVCDSQ-QGLLK   75 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~--~g~~~~~-----~~~---~~~p~~gl~~~~~g-~l~~v~~~~-~~i~~   75 (173)
                      .+....+|+|.|+|.-.++..+..|..++.  .|+.-..     ...   .+... .++++|-. ++ +.+..+ +.+-.
T Consensus       157 e~taAhsL~Fs~DGeqlfaGykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giis-c~a~sP~~~~~-~a~gsY~q~~gi  234 (406)
T KOG2919|consen  157 EYTAAHSLQFSPDGEQLFAGYKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIIS-CFAFSPMDSKT-LAVGSYGQRVGI  234 (406)
T ss_pred             hhhhheeEEecCCCCeEeecccceEEEeeccCCCCCCcchhhhhcccccccceee-eeeccCCCCcc-eeeecccceeee
Confidence            356788999999996555555667888874  3432111     111   22345 77888754 35 544444 32222


Q ss_pred             EccCC---cEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           76 VSEEG---VTVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        76 ~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      ...++   ...+.    +. ......|.+.++|+ +|..
T Consensus       235 y~~~~~~pl~llg----gh-~gGvThL~~~edGn~lfsG  268 (406)
T KOG2919|consen  235 YNDDGRRPLQLLG----GH-GGGVTHLQWCEDGNKLFSG  268 (406)
T ss_pred             EecCCCCceeeec----cc-CCCeeeEEeccCcCeeccc
Confidence            23333   22222    11 14567788888886 4444

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.93  E-value=0.29  Score=38.16  Aligned_cols=130  Identities=10%  Similarity=0.017  Sum_probs=72.2

Q ss_pred             eEEEcCC--CCEEEEc-CCCeEEEEcCC-Cc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEec
Q 030700           14 DVSVDGN--GVLYTAT-GDGWIKRMHPN-GT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQ   87 (173)
Q Consensus        14 ~l~~~~~--g~l~~~~-~~~~i~~~~~~-g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~   87 (173)
                      ++.|-+.  ..-|++. ..+.+..||+. ++  +..+ +....|...++..++|+++|+++....+..+|..+-..+...
T Consensus       207 di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~f-d~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  207 DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQF-DFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             cceecCCCCCceEEEEecceeEEEecCcccCcceeEe-ccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            3444443  3444444 55677778753 32  1222 223344337888899999898887766777775431111111


Q ss_pred             cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      +.+. -.++.+|..+|.+.+..+.+-                 +.-|-.+|.++.++..-..--..+|.|.+.++
T Consensus       286 ~kg~-tGsirsih~hp~~~~las~GL-----------------DRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  286 LKGI-TGSIRSIHCHPTHPVLASCGL-----------------DRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             cCCc-cCCcceEEEcCCCceEEeecc-----------------ceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence            2221 247899999998887776421                 23455567665332222222356677777554

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.88  E-value=0.61  Score=36.22  Aligned_cols=58  Identities=21%  Similarity=0.284  Sum_probs=39.0

Q ss_pred             CCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEE-c-CCCCeeEEeecc--ccCcceEEEccCCCEEEEE
Q 030700           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY-D-PSTNQTSLVLDG--LYFANGVALSEDERFLVVC  169 (173)
Q Consensus        95 ~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~-d-~~~~~~~~~~~~--~~~p~gi~~~~dg~~lyv~  169 (173)
                      ..-.|+++++|++..|..                 ..|+|.|+ . +++.++.....|  ......|+|+||+++|-++
T Consensus       175 ~lAalafs~~G~llATAS-----------------eKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~s  236 (391)
T KOG2110|consen  175 PLAALAFSPDGTLLATAS-----------------EKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAAS  236 (391)
T ss_pred             ceeEEEECCCCCEEEEec-----------------cCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEe
Confidence            456799999999988843                 33666553 3 333345555555  3445689999999977664

>PF00058 Ldl_recept_b: Low-density lipoprotein receptor repeat class B; InterPro: IPR000033 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=95.83  E-value=0.033  Score=29.23  Aligned_cols=38  Identities=16%  Similarity=0.174  Sum_probs=27.7

Q ss_pred             CCEEEEc-CCC-eEEEEcCCCcE--EEeccccCccccceEEcc
Q 030700           21 GVLYTAT-GDG-WIKRMHPNGTW--EDWHQVGSQSLLGLTTTK   59 (173)
Q Consensus        21 g~l~~~~-~~~-~i~~~~~~g~~--~~~~~~~~~p~~gl~~~~   59 (173)
                      ++||++| ... .|.+.+.+|.-  ..+......|. ||++|+
T Consensus         1 ~~iYWtD~~~~~~I~~a~~dGs~~~~vi~~~l~~P~-giaVD~   42 (42)
T PF00058_consen    1 GKIYWTDWSQDPSIERANLDGSNRRTVISDDLQHPE-GIAVDW   42 (42)
T ss_dssp             TEEEEEETTTTEEEEEEETTSTSEEEEEESSTSSEE-EEEEET
T ss_pred             CEEEEEECCCCcEEEEEECCCCCeEEEEECCCCCcC-EEEECC
Confidence            5789999 556 78888888753  33445577899 999874

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR classB (YWTD) repeat, the structure of which has been solved []. The six YWTD repeats together fold into a six-bladed beta-propeller. Each blade of the propeller consists of four antiparallel beta-strands; the innermost strand of each blade is labeled 1 and the outermost strand, 4. The sequence repeats are offset with respect to the blades of the propeller, such that any given 40-residue YWTD repeat spans strands 24 of one propeller blade and strand 1 of the subsequent blade. This offset ensures circularization of the propeller because the last strand of the final sequence repeat acts as an innermost strand 1 of the blade that harbors strands 24 from the first sequence repeat. The repeat is found in a variety of proteins that include, vitellogenin receptor from Drosophila melanogaster, low-density lipoprotein (LDL) receptor [], preproepidermal growth factor, and nidogen (entactin).; PDB: 3S2K_A 3S8Z_A 3S8V_B 4A0P_A 3SOB_B 3S94_B 4DG6_A 3SOV_A 3SOQ_A 1NPE_A ....

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=95.79  E-value=0.71  Score=36.39  Aligned_cols=103  Identities=24%  Similarity=0.357  Sum_probs=58.4

Q ss_pred             cCCcceEEEc--C-CCCEE--EEcCCCeEEEEc----CCCcE----EEeccccCccccceEEccCCcEEEEEeCCCeEEE
Q 030700            9 VNHPEDVSVD--G-NGVLY--TATGDGWIKRMH----PNGTW----EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK   75 (173)
Q Consensus         9 ~~~p~~l~~~--~-~g~l~--~~~~~~~i~~~~----~~g~~----~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~   75 (173)
                      +..|.|+|.-  + +|.+|  +...+|.+..|.    .+|.+    ++-......+. |+++|.....||+++...+|++
T Consensus       155 ~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~E-GCVVDDe~g~LYvgEE~~GIW~  233 (381)
T PF02333_consen  155 LSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPE-GCVVDDETGRLYVGEEDVGIWR  233 (381)
T ss_dssp             SSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EE-EEEEETTTTEEEEEETTTEEEE
T ss_pred             cccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcce-EEEEecccCCEEEecCccEEEE
Confidence            4567888874  3 57777  444667765543    24432    22224456899 9999976555599999999999


Q ss_pred             Ecc--CC--cEEEEeccCCccc-cCCccEEEc--CCC--cEEEEeC
Q 030700           76 VSE--EG--VTVLVSQFNGSQL-RFANDVIEA--SDG--SLYFTVS  112 (173)
Q Consensus        76 ~~~--~g--~~~~~~~~~~~~~-~~~~~l~~~--~dG--~~~v~~~  112 (173)
                      ++.  ++  ...+.....+..+ .-..+|++-  ++|  .|++++.
T Consensus       234 y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQ  279 (381)
T PF02333_consen  234 YDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQ  279 (381)
T ss_dssp             EESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEG
T ss_pred             EecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcC
Confidence            983  33  3344433333222 245677774  344  4666653

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.78  E-value=0.056  Score=43.50  Aligned_cols=109  Identities=15%  Similarity=0.149  Sum_probs=59.8

Q ss_pred             ceEEEcCCCC-EEEEcCCCeEEEEcCCCcEEEecc--cc--CccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEec
Q 030700           13 EDVSVDGNGV-LYTATGDGWIKRMHPNGTWEDWHQ--VG--SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQ   87 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~~~~~i~~~~~~g~~~~~~~--~~--~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~   87 (173)
                      +..-..|+|+ |.++.....+-.||...-..++..  ..  ..-. .|++++|.++.|.|.....|..+|... +.+++.
T Consensus       469 RSckL~pdgrtLivGGeastlsiWDLAapTprikaeltssapaCy-ALa~spDakvcFsccsdGnI~vwDLhn-q~~Vrq  546 (705)
T KOG0639|consen  469 RSCKLLPDGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDAKVCFSCCSDGNIAVWDLHN-QTLVRQ  546 (705)
T ss_pred             eeeEecCCCceEEeccccceeeeeeccCCCcchhhhcCCcchhhh-hhhcCCccceeeeeccCCcEEEEEccc-ceeeec
Confidence            3344556774 555555456667774322111111  12  2346 788889999977776665555555332 112222


Q ss_pred             cCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           88 FNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      +.|.+ -....|.+.+||. ||..                  ..+++|-.+|..++
T Consensus       547 fqGht-DGascIdis~dGtklWTG------------------GlDntvRcWDlreg  583 (705)
T KOG0639|consen  547 FQGHT-DGASCIDISKDGTKLWTG------------------GLDNTVRCWDLREG  583 (705)
T ss_pred             ccCCC-CCceeEEecCCCceeecC------------------CCccceeehhhhhh
Confidence            23322 2456789999996 5554                  23467777777543

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=95.74  E-value=0.42  Score=37.65  Aligned_cols=122  Identities=16%  Similarity=0.228  Sum_probs=59.2

Q ss_pred             CeEEEEcC-CCcEEEeccccCccccceEEcc-CCcEEEEEeCC------CeEEEEccCC--cEEEEeccCCccccCCccE
Q 030700           30 GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQ------QGLLKVSEEG--VTVLVSQFNGSQLRFANDV   99 (173)
Q Consensus        30 ~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~------~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l   99 (173)
                      .+|++++. +|+...+.....+.. .+.++| |..++.+|-.+      .+|+.++.+|  ...+.....   ..+.-.=
T Consensus       168 ~~i~~idl~tG~~~~v~~~~~wlg-H~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~---~e~~gHE  243 (386)
T PF14583_consen  168 CRIFTIDLKTGERKVVFEDTDWLG-HVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRME---GESVGHE  243 (386)
T ss_dssp             EEEEEEETTT--EEEEEEESS-EE-EEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---T---TEEEEEE
T ss_pred             ceEEEEECCCCceeEEEecCcccc-CcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCC---Ccccccc
Confidence            35677773 566666666666666 777886 34565778654      2688888877  444322211   1222223


Q ss_pred             EEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700          100 IEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       100 ~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      -+.+||. ||.-..             ..+...--|..+|+++++.+.+... +.-..+..++||+ |+|.|
T Consensus       244 fw~~DG~~i~y~~~-------------~~~~~~~~i~~~d~~t~~~~~~~~~-p~~~H~~ss~Dg~-L~vGD  300 (386)
T PF14583_consen  244 FWVPDGSTIWYDSY-------------TPGGQDFWIAGYDPDTGERRRLMEM-PWCSHFMSSPDGK-LFVGD  300 (386)
T ss_dssp             EE-TTSS-EEEEEE-------------ETTT--EEEEEE-TTT--EEEEEEE--SEEEEEE-TTSS-EEEEE
T ss_pred             cccCCCCEEEEEee-------------cCCCCceEEEeeCCCCCCceEEEeC-CceeeeEEcCCCC-EEEec
Confidence            4567775 444211             1122234688889988766554332 2223455567776 55554

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=95.70  E-value=0.67  Score=35.38  Aligned_cols=62  Identities=13%  Similarity=0.069  Sum_probs=41.4

Q ss_pred             cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-----Cc---EEE-ecc-----ccCccccceEEccCCcEEEEEe
Q 030700            5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-----GT---WED-WHQ-----VGSQSLLGLTTTKENNVIIVCD   68 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-----g~---~~~-~~~-----~~~~p~~gl~~~~~g~l~~v~~   68 (173)
                      .+..|..|.||++.|.+.+||++ ..+....|+.+     |.   ++. +..     ..+.|. |+.|+....+ .|+.
T Consensus        18 tDp~L~N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PT-GiVfN~~~~F-~vt~   94 (336)
T TIGR03118        18 VDPGLRNAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPT-GQVFNGSDTF-VVSG   94 (336)
T ss_pred             cCccccccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCcc-EEEEeCCCce-EEcC
Confidence            34458999999999999999999 55666666644     31   222 221     234689 9999866554 4444

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=95.65  E-value=0.6  Score=36.23  Aligned_cols=81  Identities=10%  Similarity=0.043  Sum_probs=52.8

Q ss_pred             CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEc--cCC--cEEEEeccCCccccCCccEE
Q 030700           28 GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--EEG--VTVLVSQFNGSQLRFANDVI  100 (173)
Q Consensus        28 ~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~  100 (173)
                      ..|.|+.+|...-  ...+..+.+... .|+|+++|.+ ..+... ..|+|+.  ++|  +..+.+..   .......|+
T Consensus       151 t~GdV~l~d~~nl~~v~~I~aH~~~lA-alafs~~G~l-lATASeKGTVIRVf~v~~G~kl~eFRRG~---~~~~IySL~  225 (391)
T KOG2110|consen  151 TSGDVVLFDTINLQPVNTINAHKGPLA-ALAFSPDGTL-LATASEKGTVIRVFSVPEGQKLYEFRRGT---YPVSIYSLS  225 (391)
T ss_pred             CCceEEEEEcccceeeeEEEecCCcee-EEEECCCCCE-EEEeccCceEEEEEEcCCccEeeeeeCCc---eeeEEEEEE
Confidence            5678888885442  223444455667 9999999999 544444 4577777  577  55554432   224567799


Q ss_pred             EcCCCcEEEEeCc
Q 030700          101 EASDGSLYFTVSS  113 (173)
Q Consensus       101 ~~~dG~~~v~~~~  113 (173)
                      +++++.+..+...
T Consensus       226 Fs~ds~~L~~sS~  238 (391)
T KOG2110|consen  226 FSPDSQFLAASSN  238 (391)
T ss_pred             ECCCCCeEEEecC
Confidence            9999986665443

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=95.55  E-value=0.47  Score=40.46  Aligned_cols=92  Identities=17%  Similarity=0.277  Sum_probs=57.5

Q ss_pred             cceEEEcCCCCEEE-EcCCCeEEEEcCCC--------cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC
Q 030700           12 PEDVSVDGNGVLYT-ATGDGWIKRMHPNG--------TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG   80 (173)
Q Consensus        12 p~~l~~~~~g~l~~-~~~~~~i~~~~~~g--------~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g   80 (173)
                      ..+.+++|+++..+ ++.+|+|+.|.--|        ++..|  .....+ +++|+.+|-.|| +....+++..+.  .+
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHW--H~~~V~-~L~fS~~G~~Ll-SGG~E~VLv~Wq~~T~  283 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHW--HHDEVN-SLSFSSDGAYLL-SGGREGVLVLWQLETG  283 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEe--cccccc-eeEEecCCceEe-ecccceEEEEEeecCC
Confidence            35678899887664 45889999886322        12223  233456 999999998845 433446777664  33


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      .+++...+.    .-.-++.++||+.+|...
T Consensus       284 ~kqfLPRLg----s~I~~i~vS~ds~~~sl~  310 (792)
T KOG1963|consen  284 KKQFLPRLG----SPILHIVVSPDSDLYSLV  310 (792)
T ss_pred             CcccccccC----CeeEEEEEcCCCCeEEEE
Confidence            344433221    234668999999877653

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=95.53  E-value=0.66  Score=35.48  Aligned_cols=69  Identities=7%  Similarity=0.065  Sum_probs=44.7

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG   80 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g   80 (173)
                      .+++.|.+-|.+.... .+|+|..||.+. +..++....-.|...++++++|+.|+.+.....+...| .+|
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~g   97 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKG   97 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCC
Confidence            7788999989777544 899999998643 22222222223333899999999955554444455555 366

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=95.53  E-value=1.1  Score=36.56  Aligned_cols=140  Identities=13%  Similarity=0.045  Sum_probs=81.1

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCCC--cEEEeccccCccccceEEccC-CcEEEEEeCC--CeEEEEc-c-CCcE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQ--QGLLKVS-E-EGVT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~-g~l~~v~~~~--~~i~~~~-~-~g~~   82 (173)
                      .--|+.|.+++..+++. .++.++.||...  -...+.+..+... .++|+|- ..+ +++..+  .+.+++. . .| .
T Consensus       303 eVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVK-A~awcP~q~~l-LAsGGGs~D~~i~fwn~~~g-~  379 (484)
T KOG0305|consen  303 EVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVK-ALAWCPWQSGL-LATGGGSADRCIKFWNTNTG-A  379 (484)
T ss_pred             eeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeee-EeeeCCCccCc-eEEcCCCcccEEEEEEcCCC-c
Confidence            44578999999988777 778888998532  2344556667777 8999984 344 444433  3455554 3 34 1


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      .+.....+   .....|+..+..+=+++..+  +.           ...=+||+|..- ..+..+.......--++++||
T Consensus       380 ~i~~vdtg---sQVcsL~Wsk~~kEi~sthG--~s-----------~n~i~lw~~ps~-~~~~~l~gH~~RVl~la~SPd  442 (484)
T KOG0305|consen  380 RIDSVDTG---SQVCSLIWSKKYKELLSTHG--YS-----------ENQITLWKYPSM-KLVAELLGHTSRVLYLALSPD  442 (484)
T ss_pred             EecccccC---CceeeEEEcCCCCEEEEecC--CC-----------CCcEEEEecccc-ceeeeecCCcceeEEEEECCC
Confidence            12222222   35677999998754444322  10           011266666532 122222233333456899999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      |.++.++.
T Consensus       443 g~~i~t~a  450 (484)
T KOG0305|consen  443 GETIVTGA  450 (484)
T ss_pred             CCEEEEec
Confidence            99887764

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=95.49  E-value=0.13  Score=40.36  Aligned_cols=130  Identities=15%  Similarity=0.201  Sum_probs=73.1

Q ss_pred             eEEEcCCC-CEEEEcCCCeEEEEcCCCc-EEEeccccC-ccccceEEccCCcEEEEEeCCCeEEEEccCC---cEEEEec
Q 030700           14 DVSVDGNG-VLYTATGDGWIKRMHPNGT-WEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTVLVSQ   87 (173)
Q Consensus        14 ~l~~~~~g-~l~~~~~~~~i~~~~~~g~-~~~~~~~~~-~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~~~~~   87 (173)
                      .|.|.|+| +|.++...|..--|+...= .+.+...-. ... ++.++.+|.. .++....+.+++..-.   +..+.. 
T Consensus       101 ~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr-~m~ws~~g~w-miSgD~gG~iKyWqpnmnnVk~~~a-  177 (464)
T KOG0284|consen  101 VVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVR-TMKWSHNGTW-MISGDKGGMIKYWQPNMNNVKIIQA-  177 (464)
T ss_pred             eEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccce-eEEEccCCCE-EEEcCCCceEEecccchhhhHHhhH-
Confidence            36677776 4666555565555543211 111112222 345 8899999988 6665555666666322   332211 


Q ss_pred             cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEE
Q 030700           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFL  166 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~l  166 (173)
                         .......+++++|+...|+++.                 .+|+|..+|-.-.+.+.++.+ ..-+..+.|.|....+
T Consensus       178 ---hh~eaIRdlafSpnDskF~t~S-----------------dDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLi  237 (464)
T KOG0284|consen  178 ---HHAEAIRDLAFSPNDSKFLTCS-----------------DDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLI  237 (464)
T ss_pred             ---hhhhhhheeccCCCCceeEEec-----------------CCCeEEEEeccCCchhheeccCCCCcceeccCCcccee
Confidence               1113678899999777888753                 346777777543333333333 4556678888765433

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=95.49  E-value=0.57  Score=38.19  Aligned_cols=112  Identities=14%  Similarity=0.151  Sum_probs=57.6

Q ss_pred             EEEcCCCCEEEEcCCCeEEEEcCCCcEEEecccc----CccccceEEccCCcEEEEEeC-------------CCeEEEEc
Q 030700           15 VSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDS-------------QQGLLKVS   77 (173)
Q Consensus        15 l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~-------------~~~i~~~~   77 (173)
                      +...++|.+++... ..+..+|..|+........    ...+ .+...++|++|+.+..             ...|+.++
T Consensus       153 ~~~l~nG~ll~~~~-~~~~e~D~~G~v~~~~~l~~~~~~~HH-D~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd  230 (477)
T PF05935_consen  153 FKQLPNGNLLIGSG-NRLYEIDLLGKVIWEYDLPGGYYDFHH-DIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD  230 (477)
T ss_dssp             EEE-TTS-EEEEEB-TEEEEE-TT--EEEEEE--TTEE-B-S--EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE-
T ss_pred             eeEcCCCCEEEecC-CceEEEcCCCCEEEeeecCCccccccc-ccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC
Confidence            44567888776554 6788888888854432222    2367 8888899999776651             23688888


Q ss_pred             cCC-cEEEEe---ccCCcc--------------------ccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCc
Q 030700           78 EEG-VTVLVS---QFNGSQ--------------------LRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHG  132 (173)
Q Consensus        78 ~~g-~~~~~~---~~~~~~--------------------~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~  132 (173)
                      .+| +....+   .++...                    -.+.|++..++ ++.|+++...                 ..
T Consensus       231 ~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Nsi~yd~~dd~iivSsR~-----------------~s  293 (477)
T PF05935_consen  231 PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINSIDYDPSDDSIIVSSRH-----------------QS  293 (477)
T ss_dssp             TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEEEEEETTTTEEEEEETT-----------------T-
T ss_pred             CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCccEEeCCCCeEEEEcCc-----------------ce
Confidence            888 332221   111000                    12678999998 6778887532                 13


Q ss_pred             eEEEEcCCCCeeE
Q 030700          133 VLLKYDPSTNQTS  145 (173)
Q Consensus       133 ~v~~~d~~~~~~~  145 (173)
                      .|+.+|..++++.
T Consensus       294 ~V~~Id~~t~~i~  306 (477)
T PF05935_consen  294 AVIKIDYRTGKIK  306 (477)
T ss_dssp             EEEEEE-TTS-EE
T ss_pred             EEEEEECCCCcEE
Confidence            6777776556554

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=95.47  E-value=0.9  Score=35.35  Aligned_cols=102  Identities=12%  Similarity=0.007  Sum_probs=61.1

Q ss_pred             cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700            5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ..|-+.=..+++++|...-|.+. .++.|-.||. +|.+..... .-.... |+++++-.-++|-|.....+-..|. ..
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr-~vavS~rHpYlFs~gedk~VKCwDLe~n  225 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVR-GVAVSKRHPYLFSAGEDKQVKCWDLEYN  225 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheee-eeeecccCceEEEecCCCeeEEEechhh
Confidence            34445556789999975555555 7777778884 666543222 334567 9999887777444443334444442 33


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                        .+.....     +.....+.++|.-.++++..
T Consensus       226 kvIR~YhGH-----lS~V~~L~lhPTldvl~t~g  254 (460)
T KOG0285|consen  226 KVIRHYHGH-----LSGVYCLDLHPTLDVLVTGG  254 (460)
T ss_pred             hhHHHhccc-----cceeEEEeccccceeEEecC
Confidence              3333222     24567788888766777743

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.46  E-value=0.82  Score=39.69  Aligned_cols=68  Identities=15%  Similarity=0.148  Sum_probs=49.6

Q ss_pred             CccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030700            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV   76 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~   76 (173)
                      |-.+...++.++|...+.++. .++.|..||.+.+  +..+......-. -++.+|..++ |.+...+|++.+
T Consensus       248 gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfrrendRFW-~laahP~lNL-fAAgHDsGm~VF  318 (1202)
T KOG0292|consen  248 GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFRRENDRFW-ILAAHPELNL-FAAGHDSGMIVF  318 (1202)
T ss_pred             cccCCcceEEecCccceeEecCCCccEEEEecccccceeeeeccCCeEE-EEEecCCcce-eeeecCCceEEE
Confidence            445678899999998888877 6778888987654  444544455566 7788899888 888776665543

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=95.42  E-value=0.92  Score=38.44  Aligned_cols=93  Identities=14%  Similarity=0.139  Sum_probs=58.5

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEEcc--CC-cEEEEe
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSE--EG-VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~--~g-~~~~~~   86 (173)
                      .-+|.|..++.|.-+..+..+.-|++.. .....-.+..... +++|+| |.++ +++..-++-++++.  +. +..+.+
T Consensus       372 ILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVT-cVaFnPvDDry-FiSGSLD~KvRiWsI~d~~Vv~W~D  449 (712)
T KOG0283|consen  372 ILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVT-CVAFNPVDDRY-FISGSLDGKVRLWSISDKKVVDWND  449 (712)
T ss_pred             heecccccCCeeEeccccccEEeecCCCcceeeEEecCCeeE-EEEecccCCCc-EeecccccceEEeecCcCeeEeehh
Confidence            3457887788888777777666666543 2333334555677 999998 4566 77665566666663  33 333222


Q ss_pred             ccCCccccCCccEEEcCCCc-EEEEe
Q 030700           87 QFNGSQLRFANDVIEASDGS-LYFTV  111 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~-~~v~~  111 (173)
                      . .    .....+++.|||. .+|+.
T Consensus       450 l-~----~lITAvcy~PdGk~avIGt  470 (712)
T KOG0283|consen  450 L-R----DLITAVCYSPDGKGAVIGT  470 (712)
T ss_pred             h-h----hhheeEEeccCCceEEEEE
Confidence            2 1    3567899999997 55554

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=95.42  E-value=0.67  Score=34.10  Aligned_cols=118  Identities=13%  Similarity=0.142  Sum_probs=68.3

Q ss_pred             CCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEeccCCccccCCccEEEc
Q 030700           28 GDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEA  102 (173)
Q Consensus        28 ~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~  102 (173)
                      .+..++.||. +|+. .+|....+..+ .++|+.+..+ +++..-..-++++  ... ++++. .++... -....+  +
T Consensus        79 gDk~v~vwDV~TGkv~Rr~rgH~aqVN-tV~fNeesSV-v~SgsfD~s~r~wDCRS~s~ePiQ-ildea~-D~V~Si--~  152 (307)
T KOG0316|consen   79 GDKAVQVWDVNTGKVDRRFRGHLAQVN-TVRFNEESSV-VASGSFDSSVRLWDCRSRSFEPIQ-ILDEAK-DGVSSI--D  152 (307)
T ss_pred             CCceEEEEEcccCeeeeecccccceee-EEEecCcceE-EEeccccceeEEEEcccCCCCccc-hhhhhc-CceeEE--E
Confidence            4556888884 6664 45666677888 9999988777 6655545445544  233 33332 111100 112222  2


Q ss_pred             CCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEEEEe
Q 030700          103 SDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLVVCE  170 (173)
Q Consensus       103 ~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~lyv~~  170 (173)
                      -.+..+++                 ++.+|++-+||..-|+.  ...-+..| +.+.|++|++.+.++-
T Consensus       153 v~~heIva-----------------GS~DGtvRtydiR~G~l--~sDy~g~pit~vs~s~d~nc~La~~  202 (307)
T KOG0316|consen  153 VAEHEIVA-----------------GSVDGTVRTYDIRKGTL--SSDYFGHPITSVSFSKDGNCSLASS  202 (307)
T ss_pred             ecccEEEe-----------------eccCCcEEEEEeeccee--ehhhcCCcceeEEecCCCCEEEEee
Confidence            23343333                 34568899999764432  33334444 7899999999887754

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=95.40  E-value=1.1  Score=35.76  Aligned_cols=94  Identities=13%  Similarity=0.073  Sum_probs=57.7

Q ss_pred             EEEcCCCCEEEEcCCCeEEEEcCCCc--EEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEccCC-cE---EEEec
Q 030700           15 VSVDGNGVLYTATGDGWIKRMHPNGT--WEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VT---VLVSQ   87 (173)
Q Consensus        15 l~~~~~g~l~~~~~~~~i~~~~~~g~--~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~---~~~~~   87 (173)
                      +...++|.+++....|.+++-..+|.  |+..... ..... ++.+.++|.+ |++....++++-..+| ..   .+...
T Consensus       244 v~~~~dG~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~-~v~~~~dg~l-~l~g~~G~l~~S~d~G~~~~~~~f~~~  321 (398)
T PLN00033        244 VNRSPDGDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQ-NMGWRADGGL-WLLTRGGGLYVSKGTGLTEEDFDFEEA  321 (398)
T ss_pred             EEEcCCCCEEEEECCccEEEecCCCCcceEEecCCCcccee-eeeEcCCCCE-EEEeCCceEEEecCCCCcccccceeec
Confidence            45567888887776677887655554  4544332 33456 8888999999 6665555666655566 22   33322


Q ss_pred             cCCccccCCccEEEcCCCcEEEE
Q 030700           88 FNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      ........+.++.+.+++.+|++
T Consensus       322 ~~~~~~~~l~~v~~~~d~~~~a~  344 (398)
T PLN00033        322 DIKSRGFGILDVGYRSKKEAWAA  344 (398)
T ss_pred             ccCCCCcceEEEEEcCCCcEEEE
Confidence            11111124677888888888887

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=95.38  E-value=0.42  Score=38.96  Aligned_cols=88  Identities=14%  Similarity=0.186  Sum_probs=51.6

Q ss_pred             CccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeee
Q 030700           49 SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL  125 (173)
Q Consensus        49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~  125 (173)
                      +.++ .++|++||++ ..|-..++.+++.. +-  +.-++..+.    ...--++.+|||+++++-....+         
T Consensus       291 g~in-~f~FS~DG~~-LA~VSqDGfLRvF~fdt~eLlg~mkSYF----GGLLCvcWSPDGKyIvtGGEDDL---------  355 (636)
T KOG2394|consen  291 GSIN-EFAFSPDGKY-LATVSQDGFLRIFDFDTQELLGVMKSYF----GGLLCVCWSPDGKYIVTGGEDDL---------  355 (636)
T ss_pred             cccc-ceeEcCCCce-EEEEecCceEEEeeccHHHHHHHHHhhc----cceEEEEEcCCccEEEecCCcce---------
Confidence            3567 9999999998 66655666665553 32  222222222    34566899999998777322110         


Q ss_pred             cccCCCceEEEEcCCCCeeEEeecc---ccCcceEEEcc
Q 030700          126 VSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSE  161 (173)
Q Consensus       126 ~~~~~~~~v~~~d~~~~~~~~~~~~---~~~p~gi~~~~  161 (173)
                            -+||.+-    +.++++.+   -.+.+.++|+|
T Consensus       356 ------VtVwSf~----erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  356 ------VTVWSFE----ERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             ------EEEEEec----cceEEEeccccccceeeEeecc
Confidence                  2455542    23344443   46677888875

>PRK13616 lipoprotein LpqB; Provisional

Probab=95.30  E-value=1.5  Score=36.83  Aligned_cols=142  Identities=13%  Similarity=0.072  Sum_probs=70.3

Q ss_pred             cceEEEcCCC-CEEEEcCCCeEEEEc---CCCcEEEec--------cccCccccceEEccCCcEEEEEeCCCeEEE---E
Q 030700           12 PEDVSVDGNG-VLYTATGDGWIKRMH---PNGTWEDWH--------QVGSQSLLGLTTTKENNVIIVCDSQQGLLK---V   76 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~~~~~i~~~~---~~g~~~~~~--------~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~---~   76 (173)
                      -....|+|+| .||+......+.++.   .++++....        ...+... .+.+++||+.+.+...+ .++.   +
T Consensus       399 ~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~~~~g~Is-sl~wSpDG~RiA~i~~g-~v~Va~Vv  476 (591)
T PRK13616        399 LTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAVASRVPGPIS-ELQLSRDGVRAAMIIGG-KVYLAVVE  476 (591)
T ss_pred             CCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchhhhccCCCcC-eEEECCCCCEEEEEECC-EEEEEEEE
Confidence            4567899985 688664322333322   223332111        1123466 89999999764443333 4444   2


Q ss_pred             c-cCCcEEEEeccC-Cccc-cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC
Q 030700           77 S-EEGVTVLVSQFN-GSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (173)
Q Consensus        77 ~-~~g~~~~~~~~~-~~~~-~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  153 (173)
                      . .+|...+..... ...+ ..+.++....++.|++....                .+..+++++.++.....+..+-..
T Consensus       477 r~~~G~~~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~----------------~~~~v~~v~vDG~~~~~~~~~n~~  540 (591)
T PRK13616        477 QTEDGQYALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSD----------------PEHPVWYVNLDGSNSDALPSRNLS  540 (591)
T ss_pred             eCCCCceeecccEEeecccCCccccceEecCCEEEEEecC----------------CCCceEEEecCCccccccCCCCcc
Confidence            2 345322211100 0001 13577888888888776321                234688888884443332221111


Q ss_pred             cceEEEccCCCEEEEEec
Q 030700          154 ANGVALSEDERFLVVCES  171 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~~  171 (173)
                      +.-.++......+|+++.
T Consensus       541 ~~v~~vaa~~~~iyv~~~  558 (591)
T PRK13616        541 APVVAVAASPSTVYVTDA  558 (591)
T ss_pred             CceEEEecCCceEEEEcC
Confidence            222333333346888765

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=95.28  E-value=0.11  Score=42.04  Aligned_cols=89  Identities=12%  Similarity=0.134  Sum_probs=55.9

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-EEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEe
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVS   86 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~   86 (173)
                      .+...++.|+|...++- .+|.+..++-+.+ +.- +..-.+... +++++|||++ +++..++.++.++.-- .+.++.
T Consensus       292 ~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLL-CvcWSPDGKy-IvtGGEDDLVtVwSf~erRVVAR  369 (636)
T KOG2394|consen  292 SINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLL-CVCWSPDGKY-IVTGGEDDLVTVWSFEERRVVAR  369 (636)
T ss_pred             cccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceE-EEEEcCCccE-EEecCCcceEEEEEeccceEEEe
Confidence            57778888888766544 6777666664443 111 112244566 9999999999 7766666677777422 333333


Q ss_pred             ccCCccccCCccEEEcC
Q 030700           87 QFNGSQLRFANDVIEAS  103 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~  103 (173)
                      . .|. ..+.+.+++||
T Consensus       370 G-qGH-kSWVs~VaFDp  384 (636)
T KOG2394|consen  370 G-QGH-KSWVSVVAFDP  384 (636)
T ss_pred             c-ccc-ccceeeEeecc
Confidence            2 222 25788899986

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=95.28  E-value=0.1  Score=32.07  Aligned_cols=40  Identities=13%  Similarity=0.020  Sum_probs=28.1

Q ss_pred             CeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC
Q 030700           30 GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ   71 (173)
Q Consensus        30 ~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~   71 (173)
                      +.+..+++ +++.........|+ ||+++++++++||++...
T Consensus        36 ~~Vvyyd~-~~~~~va~g~~~aN-GI~~s~~~k~lyVa~~~~   75 (86)
T PF01731_consen   36 GNVVYYDG-KEVKVVASGFSFAN-GIAISPDKKYLYVASSLA   75 (86)
T ss_pred             ceEEEEeC-CEeEEeeccCCCCc-eEEEcCCCCEEEEEeccC
Confidence            34555553 23444445567899 999999999999998664

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=95.18  E-value=1.4  Score=35.95  Aligned_cols=113  Identities=15%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcE--EEecccc---C----ccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEecc
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTW--EDWHQVG---S----QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQF   88 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~--~~~~~~~---~----~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~   88 (173)
                      ++.+|+.+.++.++.+|. +|+.  ..-....   .    ... ++++..++++ |+......++.+|. +|........
T Consensus        61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~-g~~~~~~~~V-~v~~~~g~v~AlD~~TG~~~W~~~~  138 (488)
T cd00216          61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNR-GVAYWDPRKV-FFGTFDGRLVALDAETGKQVWKFGN  138 (488)
T ss_pred             CCEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccC-CcEEccCCeE-EEecCCCeEEEEECCCCCEeeeecC
Confidence            789999988899999995 5642  2211111   0    122 3344332566 88776667888885 6732222221


Q ss_pred             CCc---cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           89 NGS---QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        89 ~~~---~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      ...   ....-....+. ++.+|++.....+         .....++.++.+|+++|+.
T Consensus       139 ~~~~~~~~~i~ssP~v~-~~~v~vg~~~~~~---------~~~~~~g~v~alD~~TG~~  187 (488)
T cd00216         139 NDQVPPGYTMTGAPTIV-KKLVIIGSSGAEF---------FACGVRGALRAYDVETGKL  187 (488)
T ss_pred             CCCcCcceEecCCCEEE-CCEEEEecccccc---------ccCCCCcEEEEEECCCCce
Confidence            111   00011223333 3667776422111         0011246888888887764

The alignment model contains an 8-bladed beta-propeller.

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=95.13  E-value=1.5  Score=35.89  Aligned_cols=120  Identities=12%  Similarity=0.086  Sum_probs=69.9

Q ss_pred             eEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCC--CeEEEEccCCcEEEEeccCCccccCCccEEEcCCCcE
Q 030700           31 WIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSL  107 (173)
Q Consensus        31 ~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~~  107 (173)
                      .+|-++.+|....+... .+-.+ ..+|+++++=+-|+-..  ..+-.++.+|.-. .+..+|    -=|.+.+.|.|++
T Consensus       252 ~Lyll~t~g~s~~V~L~k~GPVh-dv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v-~df~eg----pRN~~~fnp~g~i  325 (566)
T KOG2315|consen  252 TLYLLATQGESVSVPLLKEGPVH-DVTWSPSGREFAVVYGFMPAKVTIFNLRGKPV-FDFPEG----PRNTAFFNPHGNI  325 (566)
T ss_pred             eEEEEEecCceEEEecCCCCCce-EEEECCCCCEEEEEEecccceEEEEcCCCCEe-EeCCCC----CccceEECCCCCE
Confidence            46667666654444333 34456 89999999773444332  2455555666111 122222    1288999999986


Q ss_pred             EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCCEEEEEecC
Q 030700          108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .+-.+   ||           ...|.|-.+|..+.+  .+.. ......-..|+|||++++.+.+.
T Consensus       326 i~lAG---FG-----------NL~G~mEvwDv~n~K--~i~~~~a~~tt~~eW~PdGe~flTATTa  375 (566)
T KOG2315|consen  326 ILLAG---FG-----------NLPGDMEVWDVPNRK--LIAKFKAANTTVFEWSPDGEYFLTATTA  375 (566)
T ss_pred             EEEee---cC-----------CCCCceEEEeccchh--hccccccCCceEEEEcCCCcEEEEEecc
Confidence            55432   22           133778888876422  2222 12333458899999999988764

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=95.09  E-value=0.81  Score=34.23  Aligned_cols=97  Identities=12%  Similarity=0.184  Sum_probs=57.3

Q ss_pred             ccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeec
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~  126 (173)
                      +|...+.++.+|+||+-|...+..-.+.. +|  +..+    .|            ..|.+|-.|-..      ....++
T Consensus        11 RplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty----~G------------HtGavW~~Did~------~s~~li   68 (327)
T KOG0643|consen   11 RPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTY----DG------------HTGAVWCCDIDW------DSKHLI   68 (327)
T ss_pred             cccceEEecCCCcEEEEecCCCCceEEEecCCceeeee----cC------------CCceEEEEEecC------Ccceee
Confidence            44448899999999777765543332333 56  2332    22            134444443210      011233


Q ss_pred             ccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEE
Q 030700          127 SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv  168 (173)
                      .++.+.++-.+|-++|+....+........+.|+++|..+.+
T Consensus        69 TGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~  110 (327)
T KOG0643|consen   69 TGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILA  110 (327)
T ss_pred             eccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEE
Confidence            455667788889888887666655555678999998875444

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=95.07  E-value=0.93  Score=38.51  Aligned_cols=134  Identities=17%  Similarity=0.173  Sum_probs=76.7

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccC--ccccceEEccCCcEEEEEeCCCeEEEEc-cC-C---cE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-G---VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~-g---~~   82 (173)
                      ..-++.++|||.+.+.. -+..+..+..|.- .-+....+  -|-..+-+++|+++ .++...+.-+.++ -+ |   ..
T Consensus       510 dvL~v~~Spdgk~LaVsLLdnTVkVyflDtl-KFflsLYGHkLPV~smDIS~DSkl-ivTgSADKnVKiWGLdFGDCHKS  587 (888)
T KOG0306|consen  510 DVLCVSVSPDGKLLAVSLLDNTVKVYFLDTL-KFFLSLYGHKLPVLSMDISPDSKL-IVTGSADKNVKIWGLDFGDCHKS  587 (888)
T ss_pred             cEEEEEEcCCCcEEEEEeccCeEEEEEecce-eeeeeecccccceeEEeccCCcCe-EEeccCCCceEEeccccchhhhh
Confidence            45578888999877544 5555444433321 11111111  23337888899999 6665565555555 22 3   33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeeccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~~~~p~gi~~~~  161 (173)
                      .++.  +    -+.-.+.+-|+-.++|+++.                 ++.+-+||.+.= .+..+.....-...++.+|
T Consensus       588 ~fAH--d----DSvm~V~F~P~~~~FFt~gK-----------------D~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~  644 (888)
T KOG0306|consen  588 FFAH--D----DSVMSVQFLPKTHLFFTCGK-----------------DGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSP  644 (888)
T ss_pred             hhcc--c----CceeEEEEcccceeEEEecC-----------------cceEEeechhhhhhheeeccchheeeeeEEcC
Confidence            3321  1    24566888898888998654                 467888886532 2333333345556788888


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      +|++++-+
T Consensus       645 ~G~~vvs~  652 (888)
T KOG0306|consen  645 NGSFVVSS  652 (888)
T ss_pred             CCCeEEec
Confidence            88765443

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=95.06  E-value=0.28  Score=40.29  Aligned_cols=96  Identities=18%  Similarity=0.279  Sum_probs=60.7

Q ss_pred             eEEEcCCCCEEEEcCCCeEEEEcCCCcEEEecccc----CccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEe-
Q 030700           14 DVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG----SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVS-   86 (173)
Q Consensus        14 ~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~-   86 (173)
                      -++++.+|.+|+...+..+.+++....+....+..    .... .|.-++++++ |+.. ..++.+.++.+  +..... 
T Consensus       380 ~~~~d~~g~lWlgs~q~GLsrl~n~n~~avlde~agl~ss~V~-aived~dnsL-WIGT-s~Glvk~~pe~~~v~n~ln~  456 (671)
T COG3292         380 TTLEDSRGRLWLGSMQNGLSRLDNKNEWAVLDEDAGLPSSEVS-AIVEDPDNSL-WIGT-SGGLVKRDPESGRVLNLLNP  456 (671)
T ss_pred             hhhhccCCcEEEEecccchhhhccCCcccccccccCCccccee-eeeecCCCCE-EEec-cCCeEecCccccchhccccc
Confidence            34556688999988776788887544233222222    2334 6677899897 8764 45788888644  433332 


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ...+.+.....-+.++++|.+|++..
T Consensus       457 ~~~~l~~s~~~~lg~~~~g~Lw~a~g  482 (671)
T COG3292         457 GSHGLDGSRVEQLGLGPDGRLWLAAG  482 (671)
T ss_pred             ccCcCCcchhhhhccCCCCceEEEec
Confidence            22233334567789999999999854

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=95.01  E-value=0.27  Score=39.81  Aligned_cols=104  Identities=13%  Similarity=0.121  Sum_probs=66.2

Q ss_pred             CCccCCcceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEE
Q 030700            6 EGIVNHPEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTV   83 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~   83 (173)
                      +|-.++..+|.+.++| +||.+.-+..+.+||. +|+...-.+...... .|..+|++..+.|....+.+..+...+.+.
T Consensus       548 qGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIf-SLg~cP~~dWlavGMens~vevlh~skp~k  626 (705)
T KOG0639|consen  548 QGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIF-SLGYCPTGDWLAVGMENSNVEVLHTSKPEK  626 (705)
T ss_pred             cCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhhe-ecccCCCccceeeecccCcEEEEecCCccc
Confidence            4556788999999988 7888888889999994 565333233344555 667788888755554444455555455211


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      ..-....   ...-.+.|.+-|..|++...
T Consensus       627 yqlhlhe---ScVLSlKFa~cGkwfvStGk  653 (705)
T KOG0639|consen  627 YQLHLHE---SCVLSLKFAYCGKWFVSTGK  653 (705)
T ss_pred             eeecccc---cEEEEEEecccCceeeecCc
Confidence            1111111   24556888999999998654

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=94.95  E-value=0.95  Score=39.75  Aligned_cols=141  Identities=21%  Similarity=0.269  Sum_probs=89.2

Q ss_pred             CCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEe--ccccCccccceEEccCCcEEEEEeCCCeEEE-EccCC-cE-
Q 030700           10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLK-VSEEG-VT-   82 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~-~~~~g-~~-   82 (173)
                      ..+..+.++. ++.+|.++ ....|.+...++.....  ....-.+. +++.|.-++-+|.++....... .+.+| .+ 
T Consensus       437 ~~~~~~d~d~~~~~i~~~d~~~~~i~~~~~~~~~~~~~~~~g~~~~~-~lavD~~~~~~y~tDe~~~~i~v~~~~g~~~~  515 (877)
T KOG1215|consen  437 KNAVALDFDVLNNRIYWADLSDEKICRASQDGSSECELCGDGLCIPE-GLAVDWIGDNIYWTDEGNCLIEVADLDGSSRK  515 (877)
T ss_pred             ccceEEEEEecCCEEEEEeccCCeEeeeccCCCccceEeccCccccC-cEEEEeccCCceecccCCceeEEEEccCCcee
Confidence            4455566665 56888888 66778777766643332  33344688 9999976555599988754433 34466 32 


Q ss_pred             EEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEEeeccccCcceEEEc
Q 030700           83 VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSLVLDGLYFANGVALS  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~~~~~~~~p~gi~~~  160 (173)
                      .+...    ....|..++++| .|.+|+++...               . .++.|-.++... ...+..+...|+|++++
T Consensus       516 vl~~~----~l~~~r~~~v~p~~g~~~wtd~~~---------------~-~~i~ra~~dg~~~~~l~~~~~~~p~glt~d  575 (877)
T KOG1215|consen  516 VLVSK----DLDLPRSIAVDPEKGLMFWTDWGQ---------------P-PRIERASLDGSERAVLVTNGILWPNGLTID  575 (877)
T ss_pred             EEEec----CCCCccceeeccccCeeEEecCCC---------------C-chhhhhcCCCCCceEEEeCCccCCCcceEE
Confidence            22221    114688899999 67899998652               1 145555555332 22333447889999998


Q ss_pred             cCCCEEEEEec
Q 030700          161 EDERFLVVCES  171 (173)
Q Consensus       161 ~dg~~lyv~~~  171 (173)
                      -..+.+|++|.
T Consensus       576 ~~~~~~yw~d~  586 (877)
T KOG1215|consen  576 YETDRLYWADA  586 (877)
T ss_pred             eecceeEEEcc
Confidence            77777888874

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=94.93  E-value=0.7  Score=36.16  Aligned_cols=96  Identities=16%  Similarity=0.194  Sum_probs=51.6

Q ss_pred             eEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccC--ccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEecc
Q 030700           14 DVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQF   88 (173)
Q Consensus        14 ~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~   88 (173)
                      +..+..+|++|+++.++.++++|. +|...-......  .-. +-.+-.++.+ |+......++.++. +| ........
T Consensus       105 ~~~~~~~G~i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~-~~~v~~~~~v-~~~s~~g~~~al~~~tG~~~W~~~~~  182 (370)
T COG1520         105 GPILGSDGKIYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA-SPPVVGDGTV-YVGTDDGHLYALNADTGTLKWTYETP  182 (370)
T ss_pred             CceEEeCCeEEEecccceEEEEECCCCcEEEEEecCCCeEEe-cCcEEcCcEE-EEecCCCeEEEEEccCCcEEEEEecC
Confidence            333444899999998889999997 675432112222  112 2233456666 77644456888886 47 33222221


Q ss_pred             CCccccCCccEEEcCCCcEEEEeC
Q 030700           89 NGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        89 ~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ............ ..+|.+|++..
T Consensus       183 ~~~~~~~~~~~~-~~~~~vy~~~~  205 (370)
T COG1520         183 APLSLSIYGSPA-IASGTVYVGSD  205 (370)
T ss_pred             CccccccccCce-eecceEEEecC
Confidence            101111222222 45677888754

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.90  E-value=1.6  Score=35.07  Aligned_cols=132  Identities=14%  Similarity=0.164  Sum_probs=73.9

Q ss_pred             EEEcC-CCCEEEEcCCCeEEEE-cCCCcEEE--eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-c-EEEEecc
Q 030700           15 VSVDG-NGVLYTATGDGWIKRM-HPNGTWED--WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-TVLVSQF   88 (173)
Q Consensus        15 l~~~~-~g~l~~~~~~~~i~~~-~~~g~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~-~~~~~~~   88 (173)
                      +-|.| ++.++++..++++.+| |.++..+.  +........ +.++.|..+.++++..+++.++++..- . ..+...-
T Consensus       116 ~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR-~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~eln  194 (487)
T KOG0310|consen  116 TKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVR-CGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELN  194 (487)
T ss_pred             EEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeE-eeccccCCCeEEEecCCCceEEEEEeccCCceeEEec
Confidence            44566 5567776666666655 45555432  222334456 666776544448888888888777533 2 3333332


Q ss_pred             CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeE-EeeccccCcceEEEccCCCEE
Q 030700           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTS-LVLDGLYFANGVALSEDERFL  166 (173)
Q Consensus        89 ~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~-~~~~~~~~p~gi~~~~dg~~l  166 (173)
                      .+.|   ...+.+-|.|.++++..+                  +.+-.||.-+| +.. .+...-...+.+++..+++.|
T Consensus       195 hg~p---Ve~vl~lpsgs~iasAgG------------------n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rL  253 (487)
T KOG0310|consen  195 HGCP---VESVLALPSGSLIASAGG------------------NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRL  253 (487)
T ss_pred             CCCc---eeeEEEcCCCCEEEEcCC------------------CeEEEEEecCCceehhhhhcccceEEEEEeecCCceE
Confidence            3433   455788888888888644                  35556666533 221 111123344566776666666


Q ss_pred             EE
Q 030700          167 VV  168 (173)
Q Consensus       167 yv  168 (173)
                      +-
T Consensus       254 lS  255 (487)
T KOG0310|consen  254 LS  255 (487)
T ss_pred             ee
Confidence            54

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=94.81  E-value=1.5  Score=34.19  Aligned_cols=141  Identities=13%  Similarity=0.074  Sum_probs=75.4

Q ss_pred             eEEEcCCCC-EEEEc--CCC---eEEEEcC-CCcEEEeccc--cC---ccccceEEc--cCCcEEEEEeCC--CeEEEEc
Q 030700           14 DVSVDGNGV-LYTAT--GDG---WIKRMHP-NGTWEDWHQV--GS---QSLLGLTTT--KENNVIIVCDSQ--QGLLKVS   77 (173)
Q Consensus        14 ~l~~~~~g~-l~~~~--~~~---~i~~~~~-~g~~~~~~~~--~~---~p~~gl~~~--~~g~l~~v~~~~--~~i~~~~   77 (173)
                      .+.|.+++. +++.-  ...   .+..++. .|.......+  .+   ... .+.+.  .+..+++++...  ..++.++
T Consensus       188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~-~~~~~~~~~~~~l~~s~~~G~~hly~~~  266 (353)
T PF00930_consen  188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYD-PPHFLGPDGNEFLWISERDGYRHLYLYD  266 (353)
T ss_dssp             EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSS-EEEE-TTTSSEEEEEEETTSSEEEEEEE
T ss_pred             cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeec-ccccccCCCCEEEEEEEcCCCcEEEEEc
Confidence            466777776 77544  222   2445554 4443322111  11   123 44443  344565666632  3588888


Q ss_pred             cCC-cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCC-CCeeEEeeccccCc
Q 030700           78 EEG-VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TNQTSLVLDGLYFA  154 (173)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~~~~~~p  154 (173)
                      .++ ......  .|. ...-.-+.+|+++ .+|++....             ......||+++.+ +++++.+......-
T Consensus       267 ~~~~~~~~lT--~G~-~~V~~i~~~d~~~~~iyf~a~~~-------------~p~~r~lY~v~~~~~~~~~~LT~~~~~~  330 (353)
T PF00930_consen  267 LDGGKPRQLT--SGD-WEVTSILGWDEDNNRIYFTANGD-------------NPGERHLYRVSLDSGGEPKCLTCEDGDH  330 (353)
T ss_dssp             TTSSEEEESS---SS-S-EEEEEEEECTSSEEEEEESSG-------------GTTSBEEEEEETTETTEEEESSTTSSTT
T ss_pred             ccccceeccc--cCc-eeecccceEcCCCCEEEEEecCC-------------CCCceEEEEEEeCCCCCeEeccCCCCCc
Confidence            766 322211  111 1122346778875 588875431             1233589999998 78877666543332


Q ss_pred             ceEEEccCCCEEEEEec
Q 030700          155 NGVALSEDERFLVVCES  171 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~  171 (173)
                      ..+.|||+++++..+-+
T Consensus       331 ~~~~~Spdg~y~v~~~s  347 (353)
T PF00930_consen  331 YSASFSPDGKYYVDTYS  347 (353)
T ss_dssp             EEEEE-TTSSEEEEEEE
T ss_pred             eEEEECCCCCEEEEEEc
Confidence            58999999997766543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.80  E-value=0.13  Score=26.41  Aligned_cols=37  Identities=16%  Similarity=0.267  Sum_probs=26.8

Q ss_pred             CCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEc
Q 030700           21 GVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTT   58 (173)
Q Consensus        21 g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~   58 (173)
                      ++||+++ ..+.|..+|. +++.......+..|. +++++
T Consensus         4 ~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~-~i~~~   42 (42)
T TIGR02276         4 TKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPF-GVAVS   42 (42)
T ss_pred             CEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCc-eEEeC
Confidence            4699988 6778999985 455555455577888 88874

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=94.77  E-value=0.72  Score=36.81  Aligned_cols=107  Identities=19%  Similarity=0.195  Sum_probs=62.2

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC-cE----EE------
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG-VT----VL------   84 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g-~~----~~------   84 (173)
                      +.+||.+..+..+..||. .|.+..-......++ .+++||.++.+|+......|+..+-   .| ..    ..      
T Consensus       188 ~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~-av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t  266 (476)
T KOG0646|consen  188 NARLYTASEDRTIKLWDLSLGVLLLTITFPSSIK-AVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENT  266 (476)
T ss_pred             cceEEEecCCceEEEEEeccceeeEEEecCCcce-eEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccc
Confidence            456777667777777775 455444334455677 9999998888677655554554432   22 11    00      


Q ss_pred             -EeccCCccc-cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           85 -VSQFNGSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        85 -~~~~~~~~~-~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                       .....|... ....-+++.-||++.++                 +..+|.+..+|..+.++
T Consensus       267 ~~~~~~Gh~~~~~ITcLais~DgtlLlS-----------------Gd~dg~VcvWdi~S~Q~  311 (476)
T KOG0646|consen  267 QINVLVGHENESAITCLAISTDGTLLLS-----------------GDEDGKVCVWDIYSKQC  311 (476)
T ss_pred             eeeeeccccCCcceeEEEEecCccEEEe-----------------eCCCCCEEEEecchHHH
Confidence             000111110 13456888899998776                 23457777888765543

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=94.72  E-value=1.2  Score=32.79  Aligned_cols=56  Identities=14%  Similarity=0.254  Sum_probs=35.3

Q ss_pred             EEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           23 LYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        23 l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      +..+..+|.+..+|. .|+...  +-.+.|.+.+.|+++++-..+......+..+|. +|
T Consensus       158 IvaGS~DGtvRtydiR~G~l~s--Dy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tG  215 (307)
T KOG0316|consen  158 IVAGSVDGTVRTYDIRKGTLSS--DYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETG  215 (307)
T ss_pred             EEeeccCCcEEEEEeecceeeh--hhcCCcceeEEecCCCCEEEEeeccceeeecccchh
Confidence            334446677777763 454332  456667669999999998565555555555664 56

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=94.70  E-value=0.8  Score=36.01  Aligned_cols=98  Identities=13%  Similarity=0.165  Sum_probs=58.8

Q ss_pred             CccccceEEccCCcEEEEEeCCCeEEEEc-cCCcE--------------EEEe-ccCCccccCCccEEEcCCCcEEEEeC
Q 030700           49 SQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVT--------------VLVS-QFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        49 ~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g~~--------------~~~~-~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ...+ ++.|+++|++ ..+....+.+.++ .....              .+.. ...+ -..-+.+++..+|+++.++- 
T Consensus        66 ~aVN-~vRf~p~gel-LASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h~~diydL~Ws~d~~~l~s~-  141 (434)
T KOG1009|consen   66 RAVN-VVRFSPDGEL-LASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRG-HRDDIYDLAWSPDSNFLVSG-  141 (434)
T ss_pred             ceeE-EEEEcCCcCe-eeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecc-cccchhhhhccCCCceeeee-
Confidence            3566 9999999999 5544444433333 22000              1111 1111 11246778888888766652 


Q ss_pred             cCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCCEE
Q 030700          113 STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFL  166 (173)
Q Consensus       113 ~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~~l  166 (173)
                                      +-++.++.+|...|++..... .-..++|++|+|-++++
T Consensus       142 ----------------s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv  180 (434)
T KOG1009|consen  142 ----------------SVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYV  180 (434)
T ss_pred             ----------------eccceEEEEEeccceeEeeccccccccceeecchhhhhh
Confidence                            234677888887787655544 46788999999977643

>PRK13684 Ycf48-like protein; Provisional

Probab=94.64  E-value=1.6  Score=33.84  Aligned_cols=95  Identities=8%  Similarity=0.120  Sum_probs=54.4

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEE-cCCC-cEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEE-cc-CCc--EEE
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRM-HPNG-TWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EGV--TVL   84 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~-~~~g-~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g~--~~~   84 (173)
                      ..++++++++.+++....|.+++- +..| .+...... ..... ++++.+++++ |+.... +.+++ .. +|.  +.+
T Consensus       175 ~~~i~~~~~g~~v~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~-~i~~~~~g~~-~~vg~~-G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        175 VRNLRRSPDGKYVAVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQ-SMGFQPDGNL-WMLARG-GQIRFNDPDDLESWSKP  251 (334)
T ss_pred             EEEEEECCCCeEEEEeCCceEEEEcCCCCCeEEEeeCCCcccce-eeeEcCCCCE-EEEecC-CEEEEccCCCCCccccc
Confidence            456777777766666666777765 3333 35554322 23456 8889899998 665433 45555 33 442  222


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEE
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      ... .........++++.+++.+|++
T Consensus       252 ~~~-~~~~~~~l~~v~~~~~~~~~~~  276 (334)
T PRK13684        252 IIP-EITNGYGYLDLAYRTPGEIWAG  276 (334)
T ss_pred             cCC-ccccccceeeEEEcCCCCEEEE
Confidence            111 0101123567788888888887

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.52  E-value=0.59  Score=39.38  Aligned_cols=139  Identities=12%  Similarity=0.211  Sum_probs=78.5

Q ss_pred             cCCcceEEEcCCCCEEEEcCCCeE-EEEc-CCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc-cC-C-cE
Q 030700            9 VNHPEDVSVDGNGVLYTATGDGWI-KRMH-PNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EE-G-VT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~~~~i-~~~~-~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~-g-~~   82 (173)
                      .....+++++|++...++...+++ ..|+ +.|++.+ |......|...++|++.+.+ ..+....+.++++ -. + -.
T Consensus        62 ~d~ita~~l~~d~~~L~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~~~~g~L-lAtggaD~~v~VWdi~~~~~t  140 (775)
T KOG0319|consen   62 EDEITALALTPDEEVLVTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAFDPTGTL-LATGGADGRVKVWDIKNGYCT  140 (775)
T ss_pred             hhhhheeeecCCccEEEEeeccceEEEEEcccchHhHhHhhccCCCeEEEEEcCCCce-EEeccccceEEEEEeeCCEEE
Confidence            355677899998765555533444 4455 4666543 33323344338999999955 5554445555554 33 3 22


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeeccccCcceEEEc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLYFANGVALS  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~~p~gi~~~  160 (173)
                      .-.....    .-...+.++|+-+.|+-               ..+..++.+..||..+..+  ..+....+...+++|+
T Consensus       141 h~fkG~g----GvVssl~F~~~~~~~lL---------------~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~  201 (775)
T KOG0319|consen  141 HSFKGHG----GVVSSLLFHPHWNRWLL---------------ASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFS  201 (775)
T ss_pred             EEecCCC----ceEEEEEeCCccchhhe---------------eecCCCceEEEEEcccCchHHHHHHhhhhheeeeeec
Confidence            2222222    23466778876542221               1123567888888764433  2233446777899999


Q ss_pred             cCCCEEE
Q 030700          161 EDERFLV  167 (173)
Q Consensus       161 ~dg~~ly  167 (173)
                      +|+..++
T Consensus       202 ~d~~~~l  208 (775)
T KOG0319|consen  202 EDSLELL  208 (775)
T ss_pred             cCCceEE
Confidence            9877554

>COG3211 PhoX Predicted phosphatase [General function prediction only]

Probab=94.39  E-value=0.3  Score=40.14  Aligned_cols=59  Identities=10%  Similarity=0.074  Sum_probs=34.3

Q ss_pred             ccccceEEccCCcEEEEEeCCC---------eEEEEc-cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQ---------GLLKVS-EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~---------~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      .|. +|+||+.|+| |++..+.         ++..+. +++ ...+...+.+..-.-..+.+++|||+ +||.
T Consensus       501 ~PD-nl~fD~~GrL-Wi~TDg~~s~~~~~~~G~~~m~~~~p~~g~~~rf~t~P~g~E~tG~~FspD~~TlFV~  571 (616)
T COG3211         501 SPD-NLAFDPWGRL-WIQTDGSGSTLRNRFRGVTQMLTPDPKTGTIKRFLTGPIGCEFTGPCFSPDGKTLFVN  571 (616)
T ss_pred             CCC-ceEECCCCCE-EEEecCCCCccCcccccccccccCCCccceeeeeccCCCcceeecceeCCCCceEEEE
Confidence            489 9999999999 7775432         233333 233 22222222221112346789999996 6665

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=94.23  E-value=1.7  Score=32.55  Aligned_cols=101  Identities=13%  Similarity=0.156  Sum_probs=60.5

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEec---cccCccccceEEccCCcEEEEEeCCCeEEE--EccCC-c
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQQGLLK--VSEEG-V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~---~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~--~~~~g-~   81 (173)
                      ...+.+|+.|.|++.++. -+..+..+.. ++...-+.   .+..... +++++++|++|..|.....++.  ++.++ +
T Consensus        62 rsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK-~Vaws~sG~~LATCSRDKSVWiWe~deddEf  140 (312)
T KOG0645|consen   62 RSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVK-CVAWSASGNYLATCSRDKSVWIWEIDEDDEF  140 (312)
T ss_pred             heeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeecccccee-EEEEcCCCCEEEEeeCCCeEEEEEecCCCcE
Confidence            456789999999866555 4555555542 45443322   2234577 9999999999777766665444  44444 4


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      +..... ... -.-.-.+..+|.-.++++...
T Consensus       141 ec~aVL-~~H-tqDVK~V~WHPt~dlL~S~SY  170 (312)
T KOG0645|consen  141 ECIAVL-QEH-TQDVKHVIWHPTEDLLFSCSY  170 (312)
T ss_pred             EEEeee-ccc-cccccEEEEcCCcceeEEecc
Confidence            433221 111 023456889997668887543

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=94.23  E-value=2.8  Score=35.78  Aligned_cols=101  Identities=19%  Similarity=0.175  Sum_probs=56.3

Q ss_pred             cCccccceEEccCCcEEEEEeCCCeEEEEcc-------CC-cEEEEeccCCccccC---CccEEEcCCCcEEEEeCcCCc
Q 030700           48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-------EG-VTVLVSQFNGSQLRF---ANDVIEASDGSLYFTVSSTKF  116 (173)
Q Consensus        48 ~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-------~g-~~~~~~~~~~~~~~~---~~~l~~~~dG~~~v~~~~~~~  116 (173)
                      .+... .|+..||++- +++...+..++++.       .| ...+........+.-   .-.+.++|||++.+..-    
T Consensus       454 dgaIW-si~~~pD~~g-~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsL----  527 (888)
T KOG0306|consen  454 DGAIW-SISLSPDNKG-FVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSL----  527 (888)
T ss_pred             cccee-eeeecCCCCc-eEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEe----
Confidence            34455 6777888888 66666654444431       23 222222222222222   34468899998766521    


Q ss_pred             CcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc-ceEEEccCCCEEE
Q 030700          117 TPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA-NGVALSEDERFLV  167 (173)
Q Consensus       117 ~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p-~gi~~~~dg~~ly  167 (173)
                                   -++++-.|-.++-+.-+-..|..-| ..|.+|||.+.+.
T Consensus       528 -------------LdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSkliv  566 (888)
T KOG0306|consen  528 -------------LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIV  566 (888)
T ss_pred             -------------ccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEE
Confidence                         2244544444456665556665555 4788999988544

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=94.19  E-value=0.5  Score=39.48  Aligned_cols=136  Identities=21%  Similarity=0.193  Sum_probs=74.1

Q ss_pred             cceEEEcC--CCCEEEEcCCCeE--EEEcCCCcE------EE-eccccCccccceEEccC-CcEEEEEeCCCeEEEEcc-
Q 030700           12 PEDVSVDG--NGVLYTATGDGWI--KRMHPNGTW------ED-WHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        12 p~~l~~~~--~g~l~~~~~~~~i--~~~~~~g~~------~~-~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~~-   78 (173)
                      ...+.|||  +.+|-|+..+|.|  ||+...|--      .. +........ .|.|+|- -++|.++.+...|-.+|. 
T Consensus       630 vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~-slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  630 VTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKIT-SLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEE-EEEecchhhhHhhhhhccceeeeeehh
Confidence            35678888  3467776656654  444333311      11 112223345 6667652 234344433333443442 


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCc-
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFA-  154 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p-  154 (173)
                      ++  ...+...-     ...-+++.+|+|+...+-                 ..+|+|..|.|..++..+.... .... 
T Consensus       709 ~~~~~~~l~gHt-----dqIf~~AWSpdGr~~AtV-----------------cKDg~~rVy~Prs~e~pv~Eg~gpvgtR  766 (1012)
T KOG1445|consen  709 NAKLYSRLVGHT-----DQIFGIAWSPDGRRIATV-----------------CKDGTLRVYEPRSREQPVYEGKGPVGTR  766 (1012)
T ss_pred             hhhhhheeccCc-----CceeEEEECCCCcceeee-----------------ecCceEEEeCCCCCCCccccCCCCccCc
Confidence            44  23333221     245789999999877763                 2458999999986654333321 2122 


Q ss_pred             -ceEEEccCCCEEEEEe
Q 030700          155 -NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 -~gi~~~~dg~~lyv~~  170 (173)
                       .-|.|--||+++.|+-
T Consensus       767 gARi~wacdgr~viv~G  783 (1012)
T KOG1445|consen  767 GARILWACDGRIVIVVG  783 (1012)
T ss_pred             ceeEEEEecCcEEEEec
Confidence             2488888999888764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=94.05  E-value=1.8  Score=32.12  Aligned_cols=97  Identities=15%  Similarity=0.137  Sum_probs=52.4

Q ss_pred             ccccceEEccCCcEE-EEE--eCCCeEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeee
Q 030700           50 QSLLGLTTTKENNVI-IVC--DSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDL  125 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~-~v~--~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~  125 (173)
                      .+. ..+++++|+.+ ++.  +....++....++ ...+.   .+.   ......++++|.+|+.+...           
T Consensus        25 ~~~-s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~---~g~---~l~~PS~d~~g~~W~v~~~~-----------   86 (253)
T PF10647_consen   25 DVT-SPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL---TGG---SLTRPSWDPDGWVWTVDDGS-----------   86 (253)
T ss_pred             ccc-ceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec---cCC---ccccccccCCCCEEEEEcCC-----------
Confidence            456 78889998763 333  2234566555555 44433   222   33445789999999986431           


Q ss_pred             cccCCCceEEEEcCCCCeeE--Eee-cccc-CcceEEEccCCCEEEEE
Q 030700          126 VSGEPHGVLLKYDPSTNQTS--LVL-DGLY-FANGVALSEDERFLVVC  169 (173)
Q Consensus       126 ~~~~~~~~v~~~d~~~~~~~--~~~-~~~~-~p~gi~~~~dg~~lyv~  169 (173)
                          ...++.+.+.. ++..  .+. .... ....+.+||||..+.+.
T Consensus        87 ----~~~~~~~~~~~-g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v  129 (253)
T PF10647_consen   87 ----GGVRVVRDSAS-GTGEPVEVDWPGLRGRITALRVSPDGTRVAVV  129 (253)
T ss_pred             ----CceEEEEecCC-CcceeEEecccccCCceEEEEECCCCcEEEEE
Confidence                11233332222 2221  121 1122 45788999998876553

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.00  E-value=1.9  Score=32.29  Aligned_cols=56  Identities=18%  Similarity=0.270  Sum_probs=29.4

Q ss_pred             eEEccCCcEEEEEeCCCeEEEEccCC-cEEEEeccCCccccCCccEEEcC-CCcEEEEeCc
Q 030700           55 LTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSS  113 (173)
Q Consensus        55 l~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~  113 (173)
                      ...|.++.++|.....+..+.+|..- --.......|..+.   +-++++ +|.+|++..+
T Consensus        99 a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~---sP~i~~g~~sly~a~t~  156 (354)
T KOG4649|consen   99 AQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFV---SPVIAPGDGSLYAAITA  156 (354)
T ss_pred             eEEcCCCceEEEecCCCcEEEecccccceEEecccCCceec---cceecCCCceEEEEecc
Confidence            34567777745444444566677432 11222233333233   346677 7888888543

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=93.99  E-value=0.49  Score=36.92  Aligned_cols=103  Identities=14%  Similarity=0.188  Sum_probs=64.5

Q ss_pred             cCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCccccee
Q 030700           48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYL  123 (173)
Q Consensus        48 ~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~  123 (173)
                      ...+. -....+.++++++++...+...++  .+. ...+.......  ..|+.+.+..+- .+.+++..          
T Consensus        62 ~~a~~-~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dka----------  128 (390)
T KOG3914|consen   62 SLAPA-LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVP--KRPTAISFIREDTSVLVADKA----------  128 (390)
T ss_pred             hcccc-ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecc--cCcceeeeeeccceEEEEeec----------
Confidence            33566 677788999988888776644333  222 12222221111  467888877754 47777644          


Q ss_pred             eecccCCCceEEEEc---CCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          124 DLVSGEPHGVLLKYD---PSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       124 ~~~~~~~~~~v~~~d---~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                              |-++.+|   ...+..+..+..+..-..++++||.+++.-+|-
T Consensus       129 --------gD~~~~di~s~~~~~~~~~lGhvSml~dVavS~D~~~IitaDR  171 (390)
T KOG3914|consen  129 --------GDVYSFDILSADSGRCEPILGHVSMLLDVAVSPDDQFIITADR  171 (390)
T ss_pred             --------CCceeeeeecccccCcchhhhhhhhhheeeecCCCCEEEEecC
Confidence                    3444444   332666677777888889999999998877764

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=93.91  E-value=1.4  Score=34.86  Aligned_cols=136  Identities=11%  Similarity=-0.030  Sum_probs=74.2

Q ss_pred             cceEEEcC--CCCEEEEcCCCeEEEEcCCC--c-------EEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEc-c
Q 030700           12 PEDVSVDG--NGVLYTATGDGWIKRMHPNG--T-------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS-E   78 (173)
Q Consensus        12 p~~l~~~~--~g~l~~~~~~~~i~~~~~~g--~-------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~-~   78 (173)
                      -.||+|.+  .|+|..++.++.|..||...  .       ...+.......+ .++|++...-+|.+...+ .++..| .
T Consensus       180 g~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~Ve-DV~~h~~h~~lF~sv~dd~~L~iwD~R  258 (422)
T KOG0264|consen  180 GYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVE-DVAWHPLHEDLFGSVGDDGKLMIWDTR  258 (422)
T ss_pred             ccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCccee-hhhccccchhhheeecCCCeEEEEEcC
Confidence            45688887  56777776777888777322  1       112223344455 777776443335444443 444444 2


Q ss_pred             CC---cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEeecccc
Q 030700           79 EG---VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVLDGLY  152 (173)
Q Consensus        79 ~g---~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~~~~~  152 (173)
                      .+   .........    .-.|.+++.|-+ .++.|                 ++.+++|..+|+.+...  ..+...-.
T Consensus       259 ~~~~~~~~~~~ah~----~~vn~~~fnp~~~~ilAT-----------------~S~D~tV~LwDlRnL~~~lh~~e~H~d  317 (422)
T KOG0264|consen  259 SNTSKPSHSVKAHS----AEVNCVAFNPFNEFILAT-----------------GSADKTVALWDLRNLNKPLHTFEGHED  317 (422)
T ss_pred             CCCCCCcccccccC----CceeEEEeCCCCCceEEe-----------------ccCCCcEEEeechhcccCceeccCCCc
Confidence            22   111111111    235778999944 45555                 23568999999875332  12222234


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      ....+.|||....+..+
T Consensus       318 ev~~V~WSPh~etvLAS  334 (422)
T KOG0264|consen  318 EVFQVEWSPHNETVLAS  334 (422)
T ss_pred             ceEEEEeCCCCCceeEe
Confidence            44568888877766554

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=93.87  E-value=1.6  Score=33.50  Aligned_cols=65  Identities=23%  Similarity=0.258  Sum_probs=43.1

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEc-CCCcEEE-ecc-c-cCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMH-PNGTWED-WHQ-V-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~~~~-~~~-~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      ..++-..+.|.||++. .+|.|..|| ..++... +.. . +.... ...|..+|++ +.+...+.+++++.
T Consensus       264 i~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevc-Sa~Ftkn~ky-iLsSG~DS~vkLWE  333 (430)
T KOG0640|consen  264 ITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVC-SAVFTKNGKY-ILSSGKDSTVKLWE  333 (430)
T ss_pred             eeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceee-eEEEccCCeE-EeecCCcceeeeee
Confidence            4457777899999888 788898887 3555332 211 1 23344 6778899998 55555556777774

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=93.74  E-value=0.51  Score=37.15  Aligned_cols=95  Identities=17%  Similarity=0.126  Sum_probs=59.2

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-c-CC--cE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E-EG--VT   82 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~-~g--~~   82 (173)
                      +...++++.|+..-|++. .++.|..||. -.+- ..+...+..+. .+.++|.--+ +++.....++++. + .|  +.
T Consensus       181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk-svdWHP~kgL-iasgskDnlVKlWDprSg~cl~  258 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK-SVDWHPTKGL-IASGSKDNLVKLWDPRSGSCLA  258 (464)
T ss_pred             hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcc-eeccCCccce-eEEccCCceeEeecCCCcchhh
Confidence            346789999966666544 7788888873 2222 22234455678 8999998666 5544444466655 3 45  33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      .+...     .+..-.+.+.++|+++.|-
T Consensus       259 tlh~H-----KntVl~~~f~~n~N~Llt~  282 (464)
T KOG0284|consen  259 TLHGH-----KNTVLAVKFNPNGNWLLTG  282 (464)
T ss_pred             hhhhc-----cceEEEEEEcCCCCeeEEc
Confidence            33221     1456778899999877773

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=93.69  E-value=2  Score=33.21  Aligned_cols=134  Identities=12%  Similarity=0.073  Sum_probs=66.4

Q ss_pred             EEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CCcEEEEeccCCcc
Q 030700           16 SVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EGVTVLVSQFNGSQ   92 (173)
Q Consensus        16 ~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g~~~~~~~~~~~~   92 (173)
                      .++|+|+-..+..+-++...|... ++..+-....... -|.+..|.-. .+|..+ ...+.+.+ .-.+....+-.|+ 
T Consensus        15 ~fSp~g~yiAs~~~yrlviRd~~tlq~~qlf~cldki~-yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ckIdeg~-   91 (447)
T KOG4497|consen   15 SFSPCGNYIASLSRYRLVIRDSETLQLHQLFLCLDKIV-YIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCKIDEGQ-   91 (447)
T ss_pred             eECCCCCeeeeeeeeEEEEeccchhhHHHHHHHHHHhh-heeeecccee-eeeeeeccceEEEEEeecceeEEEeccCC-
Confidence            567888766655445666555322 2211111222233 4555555444 444433 22332222 1122223332232 


Q ss_pred             ccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           93 LRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        93 ~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                       .....+..+|||+ +..+. .  |.              -+|-.++..|.+.-.+-..-....|++|+|||++.-+.+
T Consensus        92 -agls~~~WSPdgrhiL~ts-e--F~--------------lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~s  152 (447)
T KOG4497|consen   92 -AGLSSISWSPDGRHILLTS-E--FD--------------LRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILS  152 (447)
T ss_pred             -CcceeeeECCCcceEeeee-c--ce--------------eEEEEEEeccceeEEecccccCceeEEECCCCceeeeee
Confidence             2456688999996 44442 1  11              255555554444433333334457999999999876654

>PRK13684 Ycf48-like protein; Provisional

Probab=93.69  E-value=2.6  Score=32.68  Aligned_cols=90  Identities=11%  Similarity=0.194  Sum_probs=44.2

Q ss_pred             eEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEecc---ccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEEec
Q 030700           14 DVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQ   87 (173)
Q Consensus        14 ~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~---~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~~~   87 (173)
                      .+++.+ +..|+....+.|++-.-.| .++.+..   ..+.+. .+....++.. +++.....+++-.+.|  -+.+...
T Consensus        94 ~v~~~~-~~~~~~G~~g~i~~S~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~-~~~g~~G~i~~S~DgG~tW~~~~~~  170 (334)
T PRK13684         94 SISFKG-DEGWIVGQPSLLLHTTDGGKNWTRIPLSEKLPGSPY-LITALGPGTA-EMATNVGAIYRTTDGGKNWEALVED  170 (334)
T ss_pred             eeEEcC-CcEEEeCCCceEEEECCCCCCCeEccCCcCCCCCce-EEEEECCCcc-eeeeccceEEEECCCCCCceeCcCC
Confidence            455543 3456555556677653222 4555421   123444 4444334444 5554443455544445  2332222


Q ss_pred             cCCccccCCccEEEcCCCcEEEE
Q 030700           88 FNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      .    ....+++.+.++|.++++
T Consensus       171 ~----~g~~~~i~~~~~g~~v~~  189 (334)
T PRK13684        171 A----AGVVRNLRRSPDGKYVAV  189 (334)
T ss_pred             C----cceEEEEEECCCCeEEEE
Confidence            2    235677888888765554

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=93.51  E-value=1.9  Score=31.57  Aligned_cols=68  Identities=15%  Similarity=0.209  Sum_probs=46.7

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCCC--cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG   80 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g   80 (173)
                      ...+++||.|+|.++. .+...+-+|.-|  .++.+.+...... .+.|+|.-.++..|.....|..-|..|
T Consensus       234 vaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir-~vrfsp~a~yllt~syd~~ikltdlqg  304 (350)
T KOG0641|consen  234 VAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIR-CVRFSPGAHYLLTCSYDMKIKLTDLQG  304 (350)
T ss_pred             eEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCcccee-EEEeCCCceEEEEecccceEEEeeccc
Confidence            3568999999999888 566666666433  4677777777788 999999877745554444444334455

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=93.47  E-value=3  Score=34.35  Aligned_cols=95  Identities=14%  Similarity=0.171  Sum_probs=54.4

Q ss_pred             CCcceEEEcCCC-CEEEEcCCCeEEE-EcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEe
Q 030700           10 NHPEDVSVDGNG-VLYTATGDGWIKR-MHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS   86 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~~~~i~~-~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~   86 (173)
                      ....+++|+|+. .+.++..+..+.+ +.++-+..+|...-+-.. .+.+++..++ .++..++.-+.+++ -|.-.+-.
T Consensus       146 ~~v~c~~W~p~S~~vl~c~g~h~~IKpL~~n~k~i~WkAHDGiiL-~~~W~~~s~l-I~sgGED~kfKvWD~~G~~Lf~S  223 (737)
T KOG1524|consen  146 ESIRCARWAPNSNSIVFCQGGHISIKPLAANSKIIRWRAHDGLVL-SLSWSTQSNI-IASGGEDFRFKIWDAQGANLFTS  223 (737)
T ss_pred             ceeEEEEECCCCCceEEecCCeEEEeecccccceeEEeccCcEEE-EeecCccccc-eeecCCceeEEeecccCcccccC
Confidence            446788899854 5666654332222 334556667766555555 7777788788 77666665666553 45222211


Q ss_pred             ccCCccccCCccEEEcCCCcEEEE
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      .....   -...+++.|+ .+|..
T Consensus       224 ~~~ey---~ITSva~npd-~~~~v  243 (737)
T KOG1524|consen  224 AAEEY---AITSVAFNPE-KDYLL  243 (737)
T ss_pred             Chhcc---ceeeeeeccc-cceee
Confidence            11121   2356899998 65554

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=93.39  E-value=2.4  Score=33.08  Aligned_cols=133  Identities=18%  Similarity=0.189  Sum_probs=74.4

Q ss_pred             CCccCCcceEEEcCCC-CEEEEcCCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC
Q 030700            6 EGIVNHPEDVSVDGNG-VLYTATGDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG   80 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g   80 (173)
                      .|-...-++|++++.. .||-+..++.|-+||.. .++. .......... ++.+.|.-++ +++...+.+.++++  ..
T Consensus       190 tGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~-~L~lhPTldv-l~t~grDst~RvWDiRtr  267 (460)
T KOG0285|consen  190 TGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVY-CLDLHPTLDV-LVTGGRDSTIRVWDIRTR  267 (460)
T ss_pred             cchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeE-EEecccccee-EEecCCcceEEEeeeccc
Confidence            3445667899998755 45545577889999964 4432 2344555677 8888888777 44444445555553  22


Q ss_pred             --cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcce
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANG  156 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~g  156 (173)
                        +..+.    |.. +-...+.+.| |+.+|-+..                  +++|-.+|...|+....... -.....
T Consensus       268 ~~V~~l~----GH~-~~V~~V~~~~~dpqvit~S~------------------D~tvrlWDl~agkt~~tlt~hkksvra  324 (460)
T KOG0285|consen  268 ASVHVLS----GHT-NPVASVMCQPTDPQVITGSH------------------DSTVRLWDLRAGKTMITLTHHKKSVRA  324 (460)
T ss_pred             ceEEEec----CCC-CcceeEEeecCCCceEEecC------------------CceEEEeeeccCceeEeeecccceeeE
Confidence              22221    111 2234455555 666666532                  35677777766655443332 223345


Q ss_pred             EEEccCC
Q 030700          157 VALSEDE  163 (173)
Q Consensus       157 i~~~~dg  163 (173)
                      +++.|+.
T Consensus       325 l~lhP~e  331 (460)
T KOG0285|consen  325 LCLHPKE  331 (460)
T ss_pred             EecCCch
Confidence            5555553

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=93.31  E-value=3.8  Score=33.49  Aligned_cols=18  Identities=17%  Similarity=0.401  Sum_probs=13.0

Q ss_pred             EEEEcCCCeEEEEcC-CCc
Q 030700           23 LYTATGDGWIKRMHP-NGT   40 (173)
Q Consensus        23 l~~~~~~~~i~~~~~-~g~   40 (173)
                      +|+...+|.++.+|. +|+
T Consensus       304 V~~g~~~G~l~ald~~tG~  322 (488)
T cd00216         304 IVHAPKNGFFYVLDRTTGK  322 (488)
T ss_pred             EEEECCCceEEEEECCCCc
Confidence            666667788888885 554

The alignment model contains an 8-bladed beta-propeller.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=93.23  E-value=2.6  Score=31.29  Aligned_cols=91  Identities=14%  Similarity=0.077  Sum_probs=52.7

Q ss_pred             CcceEEEcCCCCEE--EE--cCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEE-E-c-cCC-cE
Q 030700           11 HPEDVSVDGNGVLY--TA--TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK-V-S-EEG-VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~--~~--~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~-~-~-~~g-~~   82 (173)
                      .+..+++.++|..+  +.  +....++....++....+. ...... ...|+++|.+ |+........+ + + .++ ..
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~-~PS~d~~g~~-W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLT-RPSWDPDGWV-WTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccc-cccccCCCCE-EEEEcCCCceEEEEecCCCcce
Confidence            57888999988644  44  2455677776666555443 222344 5669999988 66665543322 2 2 344 22


Q ss_pred             EE-EeccCCccccCCccEEEcCCCc
Q 030700           83 VL-VSQFNGSQLRFANDVIEASDGS  106 (173)
Q Consensus        83 ~~-~~~~~~~~~~~~~~l~~~~dG~  106 (173)
                      .. .......  .....+.++|||.
T Consensus       102 ~~~v~~~~~~--~~I~~l~vSpDG~  124 (253)
T PF10647_consen  102 PVEVDWPGLR--GRITALRVSPDGT  124 (253)
T ss_pred             eEEecccccC--CceEEEEECCCCc
Confidence            22 2211110  1567899999994

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=2.7  Score=34.30  Aligned_cols=101  Identities=10%  Similarity=0.051  Sum_probs=62.3

Q ss_pred             ccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC---cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccc
Q 030700           47 VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG---VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEY  121 (173)
Q Consensus        47 ~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g---~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~  121 (173)
                      +..... |+.+++|++. ..+...+..+.++ ...   ...+...-     ...-.|+++| ...++++-.         
T Consensus       300 H~qeVC-gLkws~d~~~-lASGgnDN~~~Iwd~~~~~p~~~~~~H~-----aAVKA~awcP~q~~lLAsGG---------  363 (484)
T KOG0305|consen  300 HRQEVC-GLKWSPDGNQ-LASGGNDNVVFIWDGLSPEPKFTFTEHT-----AAVKALAWCPWQSGLLATGG---------  363 (484)
T ss_pred             ccceee-eeEECCCCCe-eccCCCccceEeccCCCccccEEEeccc-----eeeeEeeeCCCccCceEEcC---------
Confidence            344567 9999999987 5544334444444 322   22222211     2456788888 445666532         


Q ss_pred             eeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       122 ~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                            ++.++.|.-+|..++....-.........|.|++..+.+..+
T Consensus       364 ------Gs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~st  405 (484)
T KOG0305|consen  364 ------GSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLST  405 (484)
T ss_pred             ------CCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEEe
Confidence                  245678888888777655545556667789999988777655

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=93.06  E-value=0.91  Score=38.54  Aligned_cols=98  Identities=14%  Similarity=0.080  Sum_probs=59.9

Q ss_pred             CcceEEEcCCCCEEEEcC---CCeEEEEc--CCCcEEEeccccCccccceEEccCCcEEEEEeCCC--eEEEEccCC-cE
Q 030700           11 HPEDVSVDGNGVLYTATG---DGWIKRMH--PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSEEG-VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~---~~~i~~~~--~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~~~g-~~   82 (173)
                      -..++||.++|+..++..   ...+..|+  ..|.+..+.+.-.... .++|+|.+++ +++-..+  .|+.+++.. ..
T Consensus        80 ~~t~vAfS~~GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY~vt-cvaFsp~~ky-vvSVGsQHDMIVnv~dWr~N~  157 (1080)
T KOG1408|consen   80 PLTCVAFSQNGRYVATGECGRTPASKVWSLAFHGVVAEFVDHKYNVT-CVAFSPGNKY-VVSVGSQHDMIVNVNDWRVNS  157 (1080)
T ss_pred             ceeEEEEcCCCcEEEecccCCCccceeeeeccccchhhhhhccccce-eeeecCCCcE-EEeeccccceEEEhhhhhhcc
Confidence            457899999998887762   23344444  4565556656655677 8999999998 6655443  344444221 11


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      ..+   ..+.-.....++++.||..++|...
T Consensus       158 ~~a---snkiss~Vsav~fsEdgSYfvT~gn  185 (1080)
T KOG1408|consen  158 SGA---SNKISSVVSAVAFSEDGSYFVTSGN  185 (1080)
T ss_pred             ccc---ccccceeEEEEEEccCCceeeeeee
Confidence            111   1111135677899999998888644

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.99  E-value=1.9  Score=31.29  Aligned_cols=86  Identities=14%  Similarity=0.124  Sum_probs=47.7

Q ss_pred             CEEEEcCCCeEEEEcCC-----CcEEEeccc--cCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-cEEEEec----
Q 030700           22 VLYTATGDGWIKRMHPN-----GTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQ----   87 (173)
Q Consensus        22 ~l~~~~~~~~i~~~~~~-----g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~----   87 (173)
                      +|+.++....+...||.     +++....+.  -...+ -+.+ -||.+ |.--+. ..|+++++ +| +..+.+.    
T Consensus       142 ~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LN-ELE~-VdG~l-yANVw~t~~I~rI~p~sGrV~~widlS~L~  218 (262)
T COG3823         142 NLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLN-ELEW-VDGEL-YANVWQTTRIARIDPDSGRVVAWIDLSGLL  218 (262)
T ss_pred             ceEeeCCceEEEecCHHHhhhcceEEEEECCeeccccc-ceee-eccEE-EEeeeeecceEEEcCCCCcEEEEEEccCCc
Confidence            56666665666666643     222221111  11223 3333 46666 654443 47999997 56 4433322    


Q ss_pred             ----cCCccccCCccEEEcCCC-cEEEE
Q 030700           88 ----FNGSQLRFANDVIEASDG-SLYFT  110 (173)
Q Consensus        88 ----~~~~~~~~~~~l~~~~dG-~~~v~  110 (173)
                          .+....+.+|+|+.+|++ ++|+|
T Consensus       219 ~~~~~~~~~~nvlNGIA~~~~~~r~~iT  246 (262)
T COG3823         219 KELNLDKSNDNVLNGIAHDPQQDRFLIT  246 (262)
T ss_pred             hhcCccccccccccceeecCcCCeEEEe
Confidence                122234578999999976 79998

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.94  E-value=2.5  Score=36.93  Aligned_cols=67  Identities=15%  Similarity=0.165  Sum_probs=48.1

Q ss_pred             cCCcceEEEcCCCC-EEEEcCCCeEEEEc-CCCc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700            9 VNHPEDVSVDGNGV-LYTATGDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus         9 ~~~p~~l~~~~~g~-l~~~~~~~~i~~~~-~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      -...-||+|+|..- +.++-..|.|.-|| .=|. +.++.+.-+... |++|++++-+ +|+...+..++++
T Consensus         9 SsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVR-gv~FH~~qpl-FVSGGDDykIkVW   78 (1202)
T KOG0292|consen    9 SSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVR-GVDFHPTQPL-FVSGGDDYKIKVW   78 (1202)
T ss_pred             cccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccc-eeeecCCCCe-EEecCCccEEEEE
Confidence            46678999999875 44555888888887 2233 445666666677 9999999999 8887666555554

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=92.91  E-value=0.9  Score=37.24  Aligned_cols=83  Identities=13%  Similarity=0.130  Sum_probs=52.8

Q ss_pred             CEEEEcCCCeEEEEcCCCcEEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCCccccCCc
Q 030700           22 VLYTATGDGWIKRMHPNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFAN   97 (173)
Q Consensus        22 ~l~~~~~~~~i~~~~~~g~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~   97 (173)
                      .+.++..+|++..++..|+++...+ ..+... .-.+++||.- .++..++|++.++. .|  ...++...     ....
T Consensus        77 ~~~i~s~DGkf~il~k~~rVE~sv~AH~~A~~-~gRW~~dGtg-Llt~GEDG~iKiWSrsGMLRStl~Q~~-----~~v~  149 (737)
T KOG1524|consen   77 TLLICSNDGRFVILNKSARVERSISAHAAAIS-SGRWSPDGAG-LLTAGEDGVIKIWSRSGMLRSTVVQNE-----ESIR  149 (737)
T ss_pred             eEEEEcCCceEEEecccchhhhhhhhhhhhhh-hcccCCCCce-eeeecCCceEEEEeccchHHHHHhhcC-----ceeE
Confidence            3557778899999998888876543 344444 6678899987 66666778888884 77  33333221     2344


Q ss_pred             cEEEcCCC-cEEEEe
Q 030700           98 DVIEASDG-SLYFTV  111 (173)
Q Consensus        98 ~l~~~~dG-~~~v~~  111 (173)
                      .++.+|+. ++.++.
T Consensus       150 c~~W~p~S~~vl~c~  164 (737)
T KOG1524|consen  150 CARWAPNSNSIVFCQ  164 (737)
T ss_pred             EEEECCCCCceEEec
Confidence            55666654 355543

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=92.90  E-value=3.4  Score=31.70  Aligned_cols=147  Identities=17%  Similarity=0.168  Sum_probs=76.3

Q ss_pred             CCcceEEEcCCCCE-------------EEEcCCCeEEEEcC----CC---cEEEeccc-cCccccceEEcc--CCcEEEE
Q 030700           10 NHPEDVSVDGNGVL-------------YTATGDGWIKRMHP----NG---TWEDWHQV-GSQSLLGLTTTK--ENNVIIV   66 (173)
Q Consensus        10 ~~p~~l~~~~~g~l-------------~~~~~~~~i~~~~~----~g---~~~~~~~~-~~~p~~gl~~~~--~g~l~~v   66 (173)
                      ..|.|+++......             .++..+|.|.-|.+    ++   ....+... .+...-|+++..  .++.||.
T Consensus        77 ~~PTGiVfN~~~~F~vt~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYa  156 (336)
T TIGR03118        77 GTPTGQVFNGSDTFVVSGEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYA  156 (336)
T ss_pred             CCccEEEEeCCCceEEcCCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEE
Confidence            46888888753222             23334566666653    11   11222211 233333777763  3567799


Q ss_pred             EeCCCeEEEEccCCcEEEE--eccCCc--c-ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           67 CDSQQGLLKVSEEGVTVLV--SQFNGS--Q-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        67 ~~~~~~i~~~~~~g~~~~~--~~~~~~--~-~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                      ++-.++.+.+.+.....+.  ..+.+.  | -..|-+|.-- .|++||+=..+.-.    ..+.+.....|.|-.||+++
T Consensus       157 adF~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqni-g~~lyVtYA~qd~~----~~d~v~G~G~G~VdvFd~~G  231 (336)
T TIGR03118       157 ANFRQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNL-GGTLYVTYAQQDAD----RNDEVAGAGLGYVNVFTLNG  231 (336)
T ss_pred             eccCCCceEEecCccccccCCCCccCCCCCCCCCCcceEEE-CCeEEEEEEecCCc----ccccccCCCcceEEEEcCCC
Confidence            9877654433322222111  111111  1 1245555433 47899983221110    01233445668999999986


Q ss_pred             CeeEEeecc--ccCcceEEEcc
Q 030700          142 NQTSLVLDG--LYFANGVALSE  161 (173)
Q Consensus       142 ~~~~~~~~~--~~~p~gi~~~~  161 (173)
                      .-++.++.+  +..|=||+..|
T Consensus       232 ~l~~r~as~g~LNaPWG~a~AP  253 (336)
T TIGR03118       232 QLLRRVASSGRLNAPWGLAIAP  253 (336)
T ss_pred             cEEEEeccCCcccCCceeeeCh
Confidence            666667654  78898999865

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=92.84  E-value=3.3  Score=31.50  Aligned_cols=77  Identities=10%  Similarity=0.070  Sum_probs=49.8

Q ss_pred             cCCcceEEEcC-CCCEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEEE
Q 030700            9 VNHPEDVSVDG-NGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVLV   85 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~~   85 (173)
                      -.+...+.++| .+.|.++.++|.+..++......+..-....|.+..+|.++-.. |+....+.+.++|.+ + ...+.
T Consensus        13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~~~~plL~c~F~d~~~~-~~G~~dg~vr~~Dln~~~~~~ig   91 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFKHGAPLLDCAFADESTI-VTGGLDGQVRRYDLNTGNEDQIG   91 (323)
T ss_pred             hhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhheecCCceeeeeccCCceE-EEeccCceEEEEEecCCcceeec
Confidence            45567788988 56899999999998888544322211223445558888776555 777666678888853 4 44443


Q ss_pred             e
Q 030700           86 S   86 (173)
Q Consensus        86 ~   86 (173)
                      .
T Consensus        92 t   92 (323)
T KOG1036|consen   92 T   92 (323)
T ss_pred             c
Confidence            3

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.33  E-value=2.8  Score=32.93  Aligned_cols=98  Identities=10%  Similarity=-0.027  Sum_probs=59.3

Q ss_pred             ccccceEEccC--CcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeee
Q 030700           50 QSLLGLTTTKE--NNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDL  125 (173)
Q Consensus        50 ~p~~gl~~~~~--g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~  125 (173)
                      ++. ++.|-+.  .+.+..|..++.+..+|. .+.+.+...-..  -+....+...|+|+ +|+++..            
T Consensus       204 W~t-di~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~--E~~is~~~l~p~gn~Iy~gn~~------------  268 (412)
T KOG3881|consen  204 WIT-DIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFL--ENPISSTGLTPSGNFIYTGNTK------------  268 (412)
T ss_pred             eec-cceecCCCCCceEEEEecceeEEEecCcccCcceeEeccc--cCcceeeeecCCCcEEEEeccc------------
Confidence            466 7777665  555244444455665664 344444332111  13456789999997 7887654            


Q ss_pred             cccCCCceEEEEcCCCCeeEEe-ecc-ccCcceEEEccCCCEEEE
Q 030700          126 VSGEPHGVLLKYDPSTNQTSLV-LDG-LYFANGVALSEDERFLVV  168 (173)
Q Consensus       126 ~~~~~~~~v~~~d~~~~~~~~~-~~~-~~~p~gi~~~~dg~~lyv  168 (173)
                            +.|..||..++.+... ..+ -..+.+|..+|.++.|..
T Consensus       269 ------g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las  307 (412)
T KOG3881|consen  269 ------GQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLAS  307 (412)
T ss_pred             ------chhheecccCceeeccccCCccCCcceEEEcCCCceEEe
Confidence                  6888899876665433 333 356678888888765543

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.26  E-value=4.9  Score=32.06  Aligned_cols=95  Identities=15%  Similarity=0.097  Sum_probs=54.1

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCCCc------EEEecc--ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcE
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGT------WEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVT   82 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~------~~~~~~--~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~   82 (173)
                      ..++.+.++|.+|+....|.+++-+.+|.      +.....  ...... ++.+.+++.+ |++... +++.... .|..
T Consensus       283 l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~~~~~~~~l~-~v~~~~d~~~-~a~G~~-G~v~~s~D~G~t  359 (398)
T PLN00033        283 IQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEADIKSRGFGIL-DVGYRSKKEA-WAAGGS-GILLRSTDGGKS  359 (398)
T ss_pred             eeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecccCCCCcceE-EEEEcCCCcE-EEEECC-CcEEEeCCCCcc
Confidence            34677888899998887788877765553      222211  112345 7888888887 766544 5555554 4422


Q ss_pred             -EEEeccCCccccCCccEEEcCCCcEEEE
Q 030700           83 -VLVSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        83 -~~~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                       ......... ......+.+.++++.|++
T Consensus       360 W~~~~~~~~~-~~~ly~v~f~~~~~g~~~  387 (398)
T PLN00033        360 WKRDKGADNI-AANLYSVKFFDDKKGFVL  387 (398)
T ss_pred             eeEccccCCC-CcceeEEEEcCCCceEEE
Confidence             111111111 123357787777788876

>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller

Probab=92.20  E-value=0.22  Score=25.46  Aligned_cols=18  Identities=28%  Similarity=0.564  Sum_probs=15.8

Q ss_pred             CCcceEEEcCCCCEEEEc
Q 030700           10 NHPEDVSVDGNGVLYTAT   27 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~   27 (173)
                      ..+.+|++|++|++|++.
T Consensus        13 ~~~~~IavD~~GNiYv~G   30 (38)
T PF06739_consen   13 DYGNGIAVDSNGNIYVTG   30 (38)
T ss_pred             eeEEEEEECCCCCEEEEE
Confidence            568999999999999876

SBBP stands for Seven Bladed Beta Propeller.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=92.16  E-value=3.6  Score=32.63  Aligned_cols=106  Identities=16%  Similarity=0.186  Sum_probs=54.5

Q ss_pred             ceEEccCCcEEEEEe--CCC---eEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeec
Q 030700           54 GLTTTKENNVIIVCD--SQQ---GLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        54 gl~~~~~g~l~~v~~--~~~---~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~  126 (173)
                      +..++++|+++.++.  .++   .+..+|. +| +.+.+.+..   .....+.+.+||+ +|.+.........       
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg-~~l~d~i~~---~~~~~~~W~~d~~~~~y~~~~~~~~~~-------  196 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG-KFLPDGIEN---PKFSSVSWSDDGKGFFYTRFDEDQRTS-------  196 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTT-EEEEEEEEE---EESEEEEECTTSSEEEEEECSTTTSS--------
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCC-cCcCCcccc---cccceEEEeCCCCEEEEEEeCcccccc-------
Confidence            567889998755543  222   2555564 55 111112111   1223399999986 4455432110000       


Q ss_pred             ccCCCceEEEEcCCCCee--EEeeccccCcc---eEEEccCCCEEEEEe
Q 030700          127 SGEPHGVLLKYDPSTNQT--SLVLDGLYFAN---GVALSEDERFLVVCE  170 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~--~~~~~~~~~p~---gi~~~~dg~~lyv~~  170 (173)
                      .......|+++...+...  .++......+.   ++..++|+++|+++-
T Consensus       197 ~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~  245 (414)
T PF02897_consen  197 DSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISS  245 (414)
T ss_dssp             CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEE
T ss_pred             cCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEE
Confidence            000134788888876543  24444433333   788899999988854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=91.99  E-value=4.4  Score=30.89  Aligned_cols=47  Identities=15%  Similarity=0.228  Sum_probs=32.0

Q ss_pred             ecccCCCceEEEEcCCCCee-EEeeccccCcceEEEccCCCEEEEEec
Q 030700          125 LVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       125 ~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ++.+..+|-|.+||+.+.+. ..+..-......++|+.||..|.++.+
T Consensus       247 faTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia~s  294 (323)
T KOG1036|consen  247 FATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIASS  294 (323)
T ss_pred             EEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEEec
Confidence            33455778999999876543 233322234567999999999988765

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=91.99  E-value=1.7  Score=33.60  Aligned_cols=101  Identities=12%  Similarity=-0.005  Sum_probs=56.7

Q ss_pred             eecCCccCCcceEEEcCCC-CEEEEc-CCCeEEEEcCCCcEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEc--
Q 030700            3 KLGEGIVNHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNGTWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS--   77 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~g~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--   77 (173)
                      ++.+|+ .+...+.|+|+| ++..+. -+-+|-.|+...+.....+. -.... |++|++||++.-++...+..-.+.  
T Consensus        86 kIdeg~-agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~k-g~~f~~dg~f~ai~sRrDCkdyv~i~  163 (447)
T KOG4497|consen   86 KIDEGQ-AGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVK-GYAFHPDGQFCAILSRRDCKDYVQIS  163 (447)
T ss_pred             EeccCC-CcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCce-eEEECCCCceeeeeecccHHHHHHHH
Confidence            345563 667788999988 566544 56677777754432222122 22347 999999999865665443211111  


Q ss_pred             ---cCC-cEEEEeccCCccccCCccEEEcCCCcEEEE
Q 030700           78 ---EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        78 ---~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                         ..- ...+..  +.   .-..+|..+|||+..+.
T Consensus       164 ~c~~W~ll~~f~~--dT---~DltgieWsPdg~~laV  195 (447)
T KOG4497|consen  164 SCKAWILLKEFKL--DT---IDLTGIEWSPDGNWLAV  195 (447)
T ss_pred             hhHHHHHHHhcCC--Cc---ccccCceECCCCcEEEE
Confidence               000 112211  11   13467999999986555

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=91.97  E-value=4.9  Score=33.40  Aligned_cols=38  Identities=11%  Similarity=0.148  Sum_probs=27.7

Q ss_pred             eEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .+-.||..+|+...........|.+|+=|++..+++++
T Consensus       295 ~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sGm~f~An  332 (703)
T KOG2321|consen  295 ILKIWDECTGKPMASIEPTSDLNDFCFVPGSGMFFTAN  332 (703)
T ss_pred             HhhhcccccCCceeeccccCCcCceeeecCCceEEEec
Confidence            34457888888777777666678888888877776654

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=91.90  E-value=6.1  Score=32.87  Aligned_cols=128  Identities=19%  Similarity=0.314  Sum_probs=75.4

Q ss_pred             ceEEEcC-CCCEEEEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC--cEEEE
Q 030700           13 EDVSVDG-NGVLYTATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG--VTVLV   85 (173)
Q Consensus        13 ~~l~~~~-~g~l~~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g--~~~~~   85 (173)
                      ..++.+. +-.||+......|||++. .|++.. +....+..+ .+.+++-..| +.|....+.+.+ |+ +.  ...+-
T Consensus       137 RDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN-~v~in~~hgL-la~Gt~~g~VEfwDpR~ksrv~~l~  214 (703)
T KOG2321|consen  137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELN-VVSINEEHGL-LACGTEDGVVEFWDPRDKSRVGTLD  214 (703)
T ss_pred             ccccccCCCccEEEeecCcceEEEEccccccccccccccccce-eeeecCccce-EEecccCceEEEecchhhhhheeee
Confidence            3455554 557888777778999996 577543 333345556 8888887667 777665665554 43 32  33321


Q ss_pred             --ecc----CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCc-ceE
Q 030700           86 --SQF----NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFA-NGV  157 (173)
Q Consensus        86 --~~~----~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p-~gi  157 (173)
                        ..+    ....+..+..+.+..|| |-++.                ++..|.++.||..+.++-.+... ...| .-+
T Consensus       215 ~~~~v~s~pg~~~~~svTal~F~d~g-L~~aV----------------Gts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l  277 (703)
T KOG2321|consen  215 AASSVNSHPGGDAAPSVTALKFRDDG-LHVAV----------------GTSTGSVLIYDLRASKPLLVKDHGYELPIKKL  277 (703)
T ss_pred             cccccCCCccccccCcceEEEecCCc-eeEEe----------------eccCCcEEEEEcccCCceeecccCCccceeee
Confidence              111    12224467888888777 33332                23568999999987666555433 2233 345


Q ss_pred             EE
Q 030700          158 AL  159 (173)
Q Consensus       158 ~~  159 (173)
                      .|
T Consensus       278 ~~  279 (703)
T KOG2321|consen  278 DW  279 (703)
T ss_pred             cc
Confidence            55

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=91.82  E-value=3.3  Score=31.56  Aligned_cols=76  Identities=9%  Similarity=0.126  Sum_probs=49.1

Q ss_pred             CccccceEEccCCcEEEEEeCCC-eEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeec
Q 030700           49 SQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        49 ~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~  126 (173)
                      +..+ -+.|+|+|.. +++...+ .|+..+..| .+.+... .+. ....-++...+||+..++..              
T Consensus        48 geI~-~~~F~P~gs~-~aSgG~Dr~I~LWnv~gdceN~~~l-kgH-sgAVM~l~~~~d~s~i~S~g--------------  109 (338)
T KOG0265|consen   48 GEIY-TIKFHPDGSC-FASGGSDRAIVLWNVYGDCENFWVL-KGH-SGAVMELHGMRDGSHILSCG--------------  109 (338)
T ss_pred             ceEE-EEEECCCCCe-EeecCCcceEEEEeccccccceeee-ccc-cceeEeeeeccCCCEEEEec--------------
Confidence            4567 8899999998 6665554 455555455 3333221 111 13457788889999888753              


Q ss_pred             ccCCCceEEEEcCCCCeeE
Q 030700          127 SGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~  145 (173)
                         .+.++..+|.++|+..
T Consensus       110 ---tDk~v~~wD~~tG~~~  125 (338)
T KOG0265|consen  110 ---TDKTVRGWDAETGKRI  125 (338)
T ss_pred             ---CCceEEEEecccceee
Confidence               3468999999988653

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=91.72  E-value=4.9  Score=30.84  Aligned_cols=98  Identities=8%  Similarity=0.077  Sum_probs=46.4

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEE-cCCC-cEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEc-cCCcEEEEec
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRM-HPNG-TWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQ   87 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~-~~~g-~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g~~~~~~~   87 (173)
                      ..++...++|++++....|.++.- ++.. .+...... ..... .|.|++++.+ |+...+..+.+-+ .+..+.+...
T Consensus       147 ~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq-~~gf~~~~~l-w~~~~Gg~~~~s~~~~~~~~w~~~  224 (302)
T PF14870_consen  147 INDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQ-SMGFSPDGNL-WMLARGGQIQFSDDPDDGETWSEP  224 (302)
T ss_dssp             EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EE-EEEE-TTS-E-EEEETTTEEEEEE-TTEEEEE---
T ss_pred             eEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceeh-hceecCCCCE-EEEeCCcEEEEccCCCCccccccc
Confidence            344555567776655555666543 3322 25544332 34566 8999999999 6666665455444 2323333322


Q ss_pred             cCCcc--ccCCccEEEcCCCcEEEEe
Q 030700           88 FNGSQ--LRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        88 ~~~~~--~~~~~~l~~~~dG~~~v~~  111 (173)
                      .....  -...-+++..+++.+|++-
T Consensus       225 ~~~~~~~~~~~ld~a~~~~~~~wa~g  250 (302)
T PF14870_consen  225 IIPIKTNGYGILDLAYRPPNEIWAVG  250 (302)
T ss_dssp             B-TTSS--S-EEEEEESSSS-EEEEE
T ss_pred             cCCcccCceeeEEEEecCCCCEEEEe
Confidence            11111  1224667888888899974

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=91.61  E-value=2.3  Score=34.27  Aligned_cols=33  Identities=15%  Similarity=0.184  Sum_probs=23.2

Q ss_pred             CCcceEEEcCCC-CEEEEcCCCeEEEEc-CCCcEE
Q 030700           10 NHPEDVSVDGNG-VLYTATGDGWIKRMH-PNGTWE   42 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~-~~g~~~   42 (173)
                      .+|-.+-...+| +|.++...|.|-.+| .++++.
T Consensus       130 FGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~  164 (545)
T KOG1272|consen  130 FGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLH  164 (545)
T ss_pred             cCCeeeeecCCccEEEecCCccceeeeecccceee
Confidence            467777777787 566777778888777 455543

>KOG4328 consensus WD40 protein [Function unknown]

Probab=91.53  E-value=3.5  Score=33.11  Aligned_cols=98  Identities=13%  Similarity=0.097  Sum_probs=53.2

Q ss_pred             CcceEEEcC-CC-CEE-EEcCCCeEEEEcCCC------cEEEeccccCccccceEEccCC-cEEEEEeCCCeEEEE-ccC
Q 030700           11 HPEDVSVDG-NG-VLY-TATGDGWIKRMHPNG------TWEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKV-SEE   79 (173)
Q Consensus        11 ~p~~l~~~~-~g-~l~-~~~~~~~i~~~~~~g------~~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~-~~~   79 (173)
                      ...+++|+| .. .+. +++..|.|..|+.++      ....+........ +|.|+|.. ..+|.+ .+.|.+++ |-.
T Consensus       188 Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs-~l~F~P~n~s~i~ss-SyDGtiR~~D~~  265 (498)
T KOG4328|consen  188 RITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVS-GLKFSPANTSQIYSS-SYDGTIRLQDFE  265 (498)
T ss_pred             ceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCcccc-ceEecCCChhheeee-ccCceeeeeeec
Confidence            356899999 33 555 555778899998642      2334444455556 99999743 332555 44455554 434


Q ss_pred             C--cEEEEeccCCccccCCccEEEcC-CCcEEEEeC
Q 030700           80 G--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVS  112 (173)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~  112 (173)
                      +  .+.+...-...  ....++.+.. ++.+++.+.
T Consensus       266 ~~i~e~v~s~~~d~--~~fs~~d~~~e~~~vl~~~~  299 (498)
T KOG4328|consen  266 GNISEEVLSLDTDN--IWFSSLDFSAESRSVLFGDN  299 (498)
T ss_pred             chhhHHHhhcCccc--eeeeeccccCCCccEEEeec
Confidence            3  44443321110  1334444444 345666653

>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats

Probab=91.52  E-value=0.34  Score=21.95  Aligned_cols=18  Identities=28%  Similarity=0.438  Sum_probs=14.3

Q ss_pred             cCCccEEEcCCCcEEEEe
Q 030700           94 RFANDVIEASDGSLYFTV  111 (173)
Q Consensus        94 ~~~~~l~~~~dG~~~v~~  111 (173)
                      +....|..|++|++|++.
T Consensus         5 n~I~~i~~D~~G~lWigT   22 (24)
T PF07494_consen    5 NNIYSIYEDSDGNLWIGT   22 (24)
T ss_dssp             SCEEEEEE-TTSCEEEEE
T ss_pred             CeEEEEEEcCCcCEEEEe
Confidence            466789999999999974

These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=91.36  E-value=5.7  Score=30.94  Aligned_cols=151  Identities=13%  Similarity=0.115  Sum_probs=76.0

Q ss_pred             cCCcceEEEcC--CCCEEEEcCCCeEEEE--cCCCcEEEecccc----Ccc--ccceEEcc-CCcEEEEEeCCCeEEEEc
Q 030700            9 VNHPEDVSVDG--NGVLYTATGDGWIKRM--HPNGTWEDWHQVG----SQS--LLGLTTTK-ENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus         9 ~~~p~~l~~~~--~g~l~~~~~~~~i~~~--~~~g~~~~~~~~~----~~p--~~gl~~~~-~g~l~~v~~~~~~i~~~~   77 (173)
                      ++-|-|..+-|  +..++.-..+|++..+  |.+|+........    ..|  . .-+++. ++++ |+......++.++
T Consensus       134 i~~PGC~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~-~~~~~~~~~~~-~F~Sy~G~v~~~d  211 (342)
T PF06433_consen  134 IDTPGCWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFE-HPAYSRDGGRL-YFVSYEGNVYSAD  211 (342)
T ss_dssp             EEGTSEEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S---EEETTTTEE-EEEBTTSEEEEEE
T ss_pred             ecCCCEEEEEecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCccccc-ccceECCCCeE-EEEecCCEEEEEe
Confidence            56677777777  3344433377887654  5677644221111    111  1 223333 4456 6655555677777


Q ss_pred             cCC-cEEEEec---c------CCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           78 EEG-VTVLVSQ---F------NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        78 ~~g-~~~~~~~---~------~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      -.| ...+...   .      ++.....-.-+++++ .+++|+-=.....+        .-+.+.-.||.+|+++++...
T Consensus       212 lsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g--------sHKdpgteVWv~D~~t~krv~  283 (342)
T PF06433_consen  212 LSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG--------SHKDPGTEVWVYDLKTHKRVA  283 (342)
T ss_dssp             ETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT---------TTS-EEEEEEEETTTTEEEE
T ss_pred             ccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC--------CccCCceEEEEEECCCCeEEE
Confidence            544 2222211   1      122223445688886 56788852110111        112345689999999886543


Q ss_pred             eeccccCcceEEEccCCC-EEEEE
Q 030700          147 VLDGLYFANGVALSEDER-FLVVC  169 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~dg~-~lyv~  169 (173)
                      .........+|+++.|.+ .||..
T Consensus       284 Ri~l~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  284 RIPLEHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             EEEEEEEESEEEEESSSS-EEEEE
T ss_pred             EEeCCCccceEEEccCCCcEEEEE
Confidence            333223345888887766 55544

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=91.13  E-value=2.8  Score=35.64  Aligned_cols=137  Identities=12%  Similarity=0.137  Sum_probs=68.5

Q ss_pred             ccCCcceEEEcCCCCEEEEc-CCCeEEEEc--CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CC-c
Q 030700            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EG-V   81 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~--~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g-~   81 (173)
                      .+..+-.|.|+|-|..+.+. .+..+-.||  ..|-...+........ -+.|.|+|++ .+.......+.++.  .| +
T Consensus       111 h~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~-~l~lsP~Gr~-v~~g~ed~tvki~d~~agk~  188 (825)
T KOG0267|consen  111 HLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVD-VLRLSPDGRW-VASGGEDNTVKIWDLTAGKL  188 (825)
T ss_pred             cccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeE-EEeecCCCce-eeccCCcceeeeeccccccc
Confidence            34556677788866555222 222233343  3454444444344456 8899999986 44333345666553  34 2


Q ss_pred             -EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---ccCcceE
Q 030700           82 -TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGV  157 (173)
Q Consensus        82 -~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~p~gi  157 (173)
                       ..+- ...+    ..+.+.++|..-+..+                 +..+..+--+|.++  .+++..+   ...+.+.
T Consensus       189 ~~ef~-~~e~----~v~sle~hp~e~Lla~-----------------Gs~d~tv~f~dlet--fe~I~s~~~~~~~v~~~  244 (825)
T KOG0267|consen  189 SKEFK-SHEG----KVQSLEFHPLEVLLAP-----------------GSSDRTVRFWDLET--FEVISSGKPETDGVRSL  244 (825)
T ss_pred             ccccc-cccc----cccccccCchhhhhcc-----------------CCCCceeeeeccce--eEEeeccCCccCCceee
Confidence             2221 1111    1223334443222211                 12345666666653  2233322   3445678


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|+++.++..+
T Consensus       245 ~fn~~~~~~~~G~  257 (825)
T KOG0267|consen  245 AFNPDGKIVLSGE  257 (825)
T ss_pred             eecCCceeeecCc
Confidence            9999998776543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=90.93  E-value=6.6  Score=30.93  Aligned_cols=65  Identities=14%  Similarity=0.134  Sum_probs=41.7

Q ss_pred             cceEEEcC--CCCEEEEcCCCeEEEEcC-CCcEEEe----ccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700           12 PEDVSVDG--NGVLYTATGDGWIKRMHP-NGTWEDW----HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        12 p~~l~~~~--~g~l~~~~~~~~i~~~~~-~g~~~~~----~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      --+|.|+|  .|.|..+|....|+.+.+ +|.|..-    ........ +|+++|..+-++.+..-.+-++++
T Consensus       214 Gy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVE-DLqWSptE~~vfaScS~DgsIrIW  285 (440)
T KOG0302|consen  214 GYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVE-DLQWSPTEDGVFASCSCDGSIRIW  285 (440)
T ss_pred             ceeeecccccccccccCccccceEeeeeccCceeecCccccccccchh-hhccCCccCceEEeeecCceEEEE
Confidence            34688888  677887776677877763 5776542    22334567 899998766646555555555554

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.85  E-value=8.3  Score=31.90  Aligned_cols=130  Identities=15%  Similarity=0.196  Sum_probs=68.2

Q ss_pred             CCCEEEEc--CCCeEEEEcC-CCcEE-EeccccCcccc-------ceEEccCCcEEEEEeCCCeEEEEcc--CCcEEE--
Q 030700           20 NGVLYTAT--GDGWIKRMHP-NGTWE-DWHQVGSQSLL-------GLTTTKENNVIIVCDSQQGLLKVSE--EGVTVL--   84 (173)
Q Consensus        20 ~g~l~~~~--~~~~i~~~~~-~g~~~-~~~~~~~~p~~-------gl~~~~~g~l~~v~~~~~~i~~~~~--~g~~~~--   84 (173)
                      +.+|.+.+  ...+||++|. .|+++ .|.-.-..+..       +-.+++.+ . ++.-..++++++|+  .|...+  
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~-T-lvGLs~n~vfriDpRv~~~~kl~~  421 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQ-T-LVGLSDNSVFRIDPRVQGKNKLAV  421 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccc-c-EEeecCCceEEecccccCcceeee
Confidence            44555444  4467889884 56644 34221111110       11222333 3 34445568999995  442122  


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC-cceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF-ANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-p~gi~~~~dg  163 (173)
                      ...-+-...+..+.++...+|.|.|+.                  ..|.|-.||--..+......++.. ..+|..+.||
T Consensus       422 ~q~kqy~~k~nFsc~aTT~sG~IvvgS------------------~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadG  483 (644)
T KOG2395|consen  422 VQSKQYSTKNNFSCFATTESGYIVVGS------------------LKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADG  483 (644)
T ss_pred             eeccccccccccceeeecCCceEEEee------------------cCCcEEeehhhhhhhhhcccccCCceeeEEeeccC
Confidence            111111112445667888889888874                  336677777532222223344433 4689999999


Q ss_pred             CEEEEE
Q 030700          164 RFLVVC  169 (173)
Q Consensus       164 ~~lyv~  169 (173)
                      +++..|
T Consensus       484 Kwil~T  489 (644)
T KOG2395|consen  484 KWILAT  489 (644)
T ss_pred             cEEEEe
Confidence            987654

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=90.54  E-value=6.6  Score=30.22  Aligned_cols=91  Identities=16%  Similarity=0.202  Sum_probs=56.3

Q ss_pred             cceEEEcCCC---CEEEEcCCCeEEEEcCCCcEEEe---ccccCccccceEEccCCcEEEEEeCCCeEEEEc--cCC-cE
Q 030700           12 PEDVSVDGNG---VLYTATGDGWIKRMHPNGTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS--EEG-VT   82 (173)
Q Consensus        12 p~~l~~~~~g---~l~~~~~~~~i~~~~~~g~~~~~---~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~--~~g-~~   82 (173)
                      ..++.|++.-   +|..+..+|.|..|+. |.|..+   ....+..+ +|+++|.|++ -++-.+++.++.+  ..| ..
T Consensus        86 itaL~F~~~~S~shLlS~sdDG~i~iw~~-~~W~~~~slK~H~~~Vt-~lsiHPS~KL-ALsVg~D~~lr~WNLV~Gr~a  162 (362)
T KOG0294|consen   86 ITALKFYPPLSKSHLLSGSDDGHIIIWRV-GSWELLKSLKAHKGQVT-DLSIHPSGKL-ALSVGGDQVLRTWNLVRGRVA  162 (362)
T ss_pred             eEEEEecCCcchhheeeecCCCcEEEEEc-CCeEEeeeecccccccc-eeEecCCCce-EEEEcCCceeeeehhhcCccc
Confidence            3455666532   6666667788888863 444322   23445677 9999999999 6666666666655  366 33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEE
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      .+.+ +.    +.+.-+.++|.|..|+.
T Consensus       163 ~v~~-L~----~~at~v~w~~~Gd~F~v  185 (362)
T KOG0294|consen  163 FVLN-LK----NKATLVSWSPQGDHFVV  185 (362)
T ss_pred             eeec-cC----CcceeeEEcCCCCEEEE
Confidence            2222 11    34566999999974443

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=90.50  E-value=3.2  Score=33.24  Aligned_cols=99  Identities=12%  Similarity=0.086  Sum_probs=62.5

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCCc-E-E--Ee----ccc---c---CccccceEEccCCcEEEEEeCCCeEEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGT-W-E--DW----HQV---G---SQSLLGLTTTKENNVIIVCDSQQGLLK   75 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~-~-~--~~----~~~---~---~~p~~gl~~~~~g~l~~v~~~~~~i~~   75 (173)
                      ..++++++-.+.++..+..+|.|.-|+.--+ . .  ..    .+.   .   .+.+ ++++.+..++ +.+...++.++
T Consensus       328 ~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Wit-sla~i~~sdL-~asGS~~G~vr  405 (479)
T KOG0299|consen  328 GSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWIT-SLAVIPGSDL-LASGSWSGCVR  405 (479)
T ss_pred             CCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCcccccccccee-eeEecccCce-EEecCCCCceE
Confidence            4688899887777777778898888873221 1 1  11    011   1   1566 8888888888 77777777777


Q ss_pred             Ec--cCCcEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           76 VS--EEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        76 ~~--~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      ++  .+|++.+.-...-.-....|.|++.++|. ++++
T Consensus       406 LW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  406 LWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             EEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            77  35632221111111224789999999998 6665

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=90.47  E-value=2  Score=35.41  Aligned_cols=66  Identities=11%  Similarity=-0.038  Sum_probs=49.8

Q ss_pred             CcceEEEcCCC-CEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700           11 HPEDVSVDGNG-VLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        11 ~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      .+.+.+++|+. .+.++-.+|.|.-+|.+.+........-.|. -++++|+|.++.|++....+..+|
T Consensus       261 ~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~~~P~-~iaWHp~gai~~V~s~qGelQ~FD  327 (545)
T PF11768_consen  261 QVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAEFIPT-LIAWHPDGAIFVVGSEQGELQCFD  327 (545)
T ss_pred             cceEEecCcccceEEEEecCCeEEEEEcCCCeeeeeeecccce-EEEEcCCCcEEEEEcCCceEEEEE
Confidence            56677888855 5666668999999997766666555566799 999999999977776555566666

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=90.44  E-value=1.6  Score=37.77  Aligned_cols=65  Identities=14%  Similarity=0.170  Sum_probs=46.7

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      =.++|.+.+|+|-|++.+|.|.-+|..|...+ ..+..+.|..||.+..||+. +++.-...++.++
T Consensus       580 Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkw-ilaTc~tyLlLi~  645 (794)
T PF08553_consen  580 FSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKW-ILATCKTYLLLID  645 (794)
T ss_pred             ceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcE-EEEeecceEEEEE
Confidence            45788888999999999999988887664332 23344666659999999998 5444444566665

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=90.38  E-value=6.5  Score=33.91  Aligned_cols=92  Identities=9%  Similarity=0.161  Sum_probs=53.0

Q ss_pred             cceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEec
Q 030700           12 PEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQ   87 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~   87 (173)
                      ..+++|.++| .||-+...+-+.+|.. +++ .++.+..+.|.+++.+++|+.+.-++...+.+..+.. +- .......
T Consensus       254 V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsg  332 (792)
T KOG1963|consen  254 VNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISG  332 (792)
T ss_pred             cceeEEecCCceEeecccceEEEEEeecCCC-cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccC
Confidence            4567788877 4555545555556653 344 5555666666669999999998334444566666663 32 1111111


Q ss_pred             c-------CCccccCCccEEEcCC
Q 030700           88 F-------NGSQLRFANDVIEASD  104 (173)
Q Consensus        88 ~-------~~~~~~~~~~l~~~~d  104 (173)
                      +       ...+...+.++.+||.
T Consensus       333 i~~~~~~~k~~~~~l~t~~~idpr  356 (792)
T KOG1963|consen  333 IKPPTPSTKTRPQSLTTGVSIDPR  356 (792)
T ss_pred             ccCCCccccccccccceeEEEcCC
Confidence            1       1112345678888884

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.25  E-value=5.7  Score=33.39  Aligned_cols=32  Identities=19%  Similarity=0.094  Sum_probs=23.2

Q ss_pred             cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEc
Q 030700            5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMH   36 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~   36 (173)
                      .+|-.+....+.++|.=-++++. .+|.+..|+
T Consensus       223 LeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWh  255 (794)
T KOG0276|consen  223 LEGHTNNVSFVFFHPELPIIISGSEDGTVRIWN  255 (794)
T ss_pred             hhcccccceEEEecCCCcEEEEecCCccEEEec
Confidence            44556777888888887777766 677777775

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=89.94  E-value=2.1  Score=34.82  Aligned_cols=69  Identities=12%  Similarity=0.021  Sum_probs=44.0

Q ss_pred             cceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030700           12 PEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG   80 (173)
Q Consensus        12 p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g   80 (173)
                      ..|+++.| +..|+++. .+.+|+.||...+...--.....|...++|.++|.+|.+......++.+|.-+
T Consensus       211 ~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~  281 (673)
T KOG4378|consen  211 CRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGELIAYDMRS  281 (673)
T ss_pred             cCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceEEEEeccc
Confidence            46899999 45677776 78899999854332221122334544889999998744443445677777444

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=89.55  E-value=7  Score=29.10  Aligned_cols=68  Identities=15%  Similarity=0.217  Sum_probs=46.2

Q ss_pred             ccCCcceEEEcC-CCCEEEEcCCCeEEEEcC-CCcEEEe-ccccCccccceEE-ccCCcEEEEEeCCCeEEEEcc
Q 030700            8 IVNHPEDVSVDG-NGVLYTATGDGWIKRMHP-NGTWEDW-HQVGSQSLLGLTT-TKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~~~~~i~~~~~-~g~~~~~-~~~~~~p~~gl~~-~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      .++....+-.|| ++.++++..++.+|.+|. +|++... .......+ .++- +..+.+ + +..+++.+++++
T Consensus       113 evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH-~vv~R~~~~qi-l-sG~EDGtvRvWd  184 (325)
T KOG0649|consen  113 EVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVH-SVVGRNANGQI-L-SGAEDGTVRVWD  184 (325)
T ss_pred             cCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceee-eeeecccCcce-e-ecCCCccEEEEe
Confidence            456677888998 678888889999999995 7877653 33344555 5554 456665 3 445567777764

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=89.48  E-value=8.6  Score=31.71  Aligned_cols=94  Identities=12%  Similarity=0.078  Sum_probs=50.9

Q ss_pred             ceEEEcCCCCEEEEc---CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC--eEEEE-ccCCcEEEEe
Q 030700           13 EDVSVDGNGVLYTAT---GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKV-SEEGVTVLVS   86 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~---~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~-~~~g~~~~~~   86 (173)
                      .++.|.++|+=|..-   +-.++-.++..+..+.  +.+..|.|.+-|++.|+++.+|..++  |-+.+ |......+..
T Consensus       274 hdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~v~--df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~  351 (566)
T KOG2315|consen  274 HDVTWSPSGREFAVVYGFMPAKVTIFNLRGKPVF--DFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAK  351 (566)
T ss_pred             eEEEECCCCCEEEEEEecccceEEEEcCCCCEeE--eCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccc
Confidence            346666655433211   3344555555555432  33445666899999999988887663  33333 3222222211


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ..    .....-...+|||..++|..
T Consensus       352 ~~----a~~tt~~eW~PdGe~flTAT  373 (566)
T KOG2315|consen  352 FK----AANTTVFEWSPDGEYFLTAT  373 (566)
T ss_pred             cc----cCCceEEEEcCCCcEEEEEe
Confidence            10    12334578889998766643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=89.34  E-value=12  Score=31.58  Aligned_cols=69  Identities=9%  Similarity=0.158  Sum_probs=45.8

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g   80 (173)
                      ..--.+|..+.|.++++. ..+-|..||+ .+ ++.++..+..... .|.+++||+. .++...++.++++.-|
T Consensus       172 ~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr-~ll~~dDGt~-~ls~sSDgtIrlWdLg  243 (735)
T KOG0308|consen  172 DSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVR-VLLVNDDGTR-LLSASSDGTIRLWDLG  243 (735)
T ss_pred             cceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceE-EEEEcCCCCe-EeecCCCceEEeeecc
Confidence            344567777788888877 4455666775 33 3344445556677 8889999988 6666666777777544

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.23  E-value=5  Score=31.69  Aligned_cols=54  Identities=17%  Similarity=0.199  Sum_probs=29.9

Q ss_pred             ceEEccCCcEEEEEeCCCeEEEEcc--CCcEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           54 GLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        54 gl~~~~~g~l~~v~~~~~~i~~~~~--~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      .++++.+|.. +.+...++.+|+..  +-...+....   .-...++|.++|||.+.++-
T Consensus       149 ~vaf~~~gs~-latgg~dg~lRv~~~Ps~~t~l~e~~---~~~eV~DL~FS~dgk~lasi  204 (398)
T KOG0771|consen  149 VVAFNGDGSK-LATGGTDGTLRVWEWPSMLTILEEIA---HHAEVKDLDFSPDGKFLASI  204 (398)
T ss_pred             EEEEcCCCCE-eeeccccceEEEEecCcchhhhhhHh---hcCccccceeCCCCcEEEEe
Confidence            5677777666 44444456666553  2111111111   11367899999999766653

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=89.23  E-value=10  Score=30.54  Aligned_cols=115  Identities=13%  Similarity=0.108  Sum_probs=58.6

Q ss_pred             CCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC---cEEEEecc-CC-cccc---CCccEEEcCCC
Q 030700           37 PNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG---VTVLVSQF-NG-SQLR---FANDVIEASDG  105 (173)
Q Consensus        37 ~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g---~~~~~~~~-~~-~~~~---~~~~l~~~~dG  105 (173)
                      ++-....+....+.+. +++|-.+. . |++...+|.+.++.   ..   ...++... .. .+.+   +.++++.-|.-
T Consensus       316 ~eesqlifrg~~~sid-cv~~In~~-H-fvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s  392 (479)
T KOG0299|consen  316 PEESQLIFRGGEGSID-CVAFINDE-H-FVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS  392 (479)
T ss_pred             cccceeeeeCCCCCee-eEEEeccc-c-eeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC
Confidence            4444444445566777 88886553 4 55555555444442   11   11111111 00 1122   55666666655


Q ss_pred             cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccCcceEEEccCCCEEEEE
Q 030700          106 SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       106 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .++.+-..               ...-+||.+...-..+..+..  -..+.|+|+|+++|+++++.
T Consensus       393 dL~asGS~---------------~G~vrLW~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivag  443 (479)
T KOG0299|consen  393 DLLASGSW---------------SGCVRLWKIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAG  443 (479)
T ss_pred             ceEEecCC---------------CCceEEEEecCCccccceeeecccccEEEEEEEccCCCEEEEe
Confidence            55554211               112366666553223333322  24667999999999988775

>PRK13614 lipoprotein LpqB; Provisional

Probab=89.12  E-value=12  Score=31.36  Aligned_cols=99  Identities=15%  Similarity=0.161  Sum_probs=52.9

Q ss_pred             cceEEEcCCCCEEEEcCC--CeEEEEcCCCc--E-------EEeccccC-ccccceEEccCC-cEEEEEeCC-C-eEEE-
Q 030700           12 PEDVSVDGNGVLYTATGD--GWIKRMHPNGT--W-------EDWHQVGS-QSLLGLTTTKEN-NVIIVCDSQ-Q-GLLK-   75 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~--~~i~~~~~~g~--~-------~~~~~~~~-~p~~gl~~~~~g-~l~~v~~~~-~-~i~~-   75 (173)
                      ..-..||++|.+|..+.+  +.|.+...+|.  .       ....-..+ ... .+.+++|| |.+++.... + .++. 
T Consensus       385 Lt~PS~d~~g~vWtv~~g~~~~vv~~~~~g~~~~~~~~~~~v~~~~l~g~~I~-~lrvSrDG~R~Avi~~~~g~~~V~va  463 (573)
T PRK13614        385 LTRPSFSPQDWVWTAGPGGNGRIVAYRPTGVAEGAQAPTVTLTADWLAGRTVK-ELRVSREGVRALVISEQNGKSRVQVA  463 (573)
T ss_pred             ccCCcccCCCCEEEeeCCCCceEEEEecCCCcccccccceeecccccCCCeeE-EEEECCCccEEEEEEEeCCccEEEEE
Confidence            344577888899976643  47888765442  1       11111112 255 78889998 554555222 1 1222 


Q ss_pred             -E--ccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           76 -V--SEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        76 -~--~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                       +  +.+| ...+.....-.....+.++..-.++.|.+..
T Consensus       464 ~V~R~~~G~P~~L~~~~~~~~~~~~~sl~W~~~~sl~V~~  503 (573)
T PRK13614        464 GIVRNEDGTPRELTAPITLAADSDADTGAWVGDSTVVVTK  503 (573)
T ss_pred             EEEeCCCCCeEEccCceecccCCCcceeEEcCCCEEEEEe
Confidence             1  3455 2444322110112467788888888877764

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=88.88  E-value=6.3  Score=32.69  Aligned_cols=62  Identities=21%  Similarity=0.254  Sum_probs=40.3

Q ss_pred             cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEEE
Q 030700           94 RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVC  169 (173)
Q Consensus        94 ~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv~  169 (173)
                      ...|.+-++|.|++.+.-.-              .+..|.++-||.+-.....+... ....+.+.|+|-||++..+
T Consensus       493 ~~~N~vfwsPkG~fvvva~l--------------~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDPtGRYvvT~  555 (698)
T KOG2314|consen  493 KFANTVFWSPKGRFVVVAAL--------------VSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDPTGRYVVTS  555 (698)
T ss_pred             cccceEEEcCCCcEEEEEEe--------------cccccceEEEecchhhhhhccCccccccccceECCCCCEEEEe
Confidence            47899999999997665321              11346788888764333333322 3445779999999966544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=88.39  E-value=11  Score=29.76  Aligned_cols=136  Identities=17%  Similarity=0.164  Sum_probs=81.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC--C--CcEEE--------------------ec---cccCccccceEEccCC
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP--N--GTWED--------------------WH---QVGSQSLLGLTTTKEN   61 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~--~--g~~~~--------------------~~---~~~~~p~~gl~~~~~g   61 (173)
                      ...+++.++++|..+.+. .+..|-.|+.  +  ...+.                    +.   ....... .+.|++.+
T Consensus       194 ~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs-~V~w~d~~  272 (423)
T KOG0313|consen  194 RSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVS-SVVWSDAT  272 (423)
T ss_pred             cceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEeccccccee-eEEEcCCC
Confidence            345778888999888666 6666666651  1  10100                    00   1111234 67777755


Q ss_pred             cEEEEEeCCCeEEEEc-cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030700           62 NVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (173)
Q Consensus        62 ~l~~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  138 (173)
                      -+ |-+...+.|...| ..|  ...+...      ...+.+...|.-++.++-.                 .+..+..+|
T Consensus       273 v~-yS~SwDHTIk~WDletg~~~~~~~~~------ksl~~i~~~~~~~Ll~~gs-----------------sdr~irl~D  328 (423)
T KOG0313|consen  273 VI-YSVSWDHTIKVWDLETGGLKSTLTTN------KSLNCISYSPLSKLLASGS-----------------SDRHIRLWD  328 (423)
T ss_pred             ce-EeecccceEEEEEeecccceeeeecC------cceeEeecccccceeeecC-----------------CCCceeecC
Confidence            55 8777777787777 344  4433321      2557788888777777632                 334566788


Q ss_pred             CCCCeeEEee----ccccCcceEEEccCCCEEEEEe
Q 030700          139 PSTNQTSLVL----DGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       139 ~~~~~~~~~~----~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      |.++.-.++.    ..-....++.|+|...+++++-
T Consensus       329 PR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~  364 (423)
T KOG0313|consen  329 PRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSG  364 (423)
T ss_pred             CCCCCCceeEEeeecchhhhhheecCCCCceEEEEE
Confidence            8876433332    2235567888888877777763

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=88.09  E-value=6.4  Score=32.91  Aligned_cols=95  Identities=8%  Similarity=0.094  Sum_probs=54.1

Q ss_pred             CCcceEEEcCCCCEEEEc----CCCeEEEEcCCCc--EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--
Q 030700           10 NHPEDVSVDGNGVLYTAT----GDGWIKRMHPNGT--WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~----~~~~i~~~~~~g~--~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--   80 (173)
                      +....+.|+..|..+++.    .+.+|+.....-+  ...+....+.+. ...|+|.--.|+||... .+...+- ..  
T Consensus       522 k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq-~v~FHPs~p~lfVaTq~-~vRiYdL~kqel  599 (733)
T KOG0650|consen  522 KSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQ-RVKFHPSKPYLFVATQR-SVRIYDLSKQEL  599 (733)
T ss_pred             CccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCcee-EEEecCCCceEEEEecc-ceEEEehhHHHH
Confidence            345567888888766444    2234544443322  233334456788 88999876665777533 3444442 23  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCC-cEEEEe
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDG-SLYFTV  111 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~  111 (173)
                      +..+....     .+...|+++|.| ++++..
T Consensus       600 vKkL~tg~-----kwiS~msihp~GDnli~gs  626 (733)
T KOG0650|consen  600 VKKLLTGS-----KWISSMSIHPNGDNLILGS  626 (733)
T ss_pred             HHHHhcCC-----eeeeeeeecCCCCeEEEec
Confidence            33333222     366789999988 577764

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=87.90  E-value=1.1  Score=35.44  Aligned_cols=66  Identities=24%  Similarity=0.268  Sum_probs=39.3

Q ss_pred             CCcceEEEcC-CCCEEEEcCCCeEEEEcCC--C-cE-EEe--ccc---cCccccceEEc--cCC-cEEEEEeCCCeEEEE
Q 030700           10 NHPEDVSVDG-NGVLYTATGDGWIKRMHPN--G-TW-EDW--HQV---GSQSLLGLTTT--KEN-NVIIVCDSQQGLLKV   76 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~~~~~i~~~~~~--g-~~-~~~--~~~---~~~p~~gl~~~--~~g-~l~~v~~~~~~i~~~   76 (173)
                      .++||.++|. .|.||++..+..||+++.+  + .. ..+  ...   ..... ||++=  .+| .+|++++-++..+.+
T Consensus       208 sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvE-Glaly~~~~g~gYLivSsQG~~sf~V  286 (381)
T PF02333_consen  208 SQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVE-GLALYYGSDGKGYLIVSSQGDNSFAV  286 (381)
T ss_dssp             S-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EE-EEEEEE-CCC-EEEEEEEGGGTEEEE
T ss_pred             CcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCcc-ceEEEecCCCCeEEEEEcCCCCeEEE
Confidence            4799999998 6899999988899999843  2 21 112  111   12456 77773  333 344666655443333

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=87.84  E-value=11  Score=28.99  Aligned_cols=71  Identities=14%  Similarity=0.179  Sum_probs=42.9

Q ss_pred             cCCcceEEEcCCC-CEEE-EcCCCeEEEEc---CCCcEEEec--------------cccCccccceEEccCCcEEEEEeC
Q 030700            9 VNHPEDVSVDGNG-VLYT-ATGDGWIKRMH---PNGTWEDWH--------------QVGSQSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus         9 ~~~p~~l~~~~~g-~l~~-~~~~~~i~~~~---~~g~~~~~~--------------~~~~~p~~gl~~~~~g~l~~v~~~   69 (173)
                      -++.-.+.|.|.- .+.. +..+|.|.-||   ..|....+.              ...+..+ |+++..+|+.++.|..
T Consensus       188 r~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvn-gla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  188 RDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVN-GLAWTSDARYLASCGT  266 (397)
T ss_pred             cCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceee-eeeecccchhhhhccC
Confidence            4556678888844 3333 34788877776   234332221              1223467 9999999988677766


Q ss_pred             CCeEEEEcc-CC
Q 030700           70 QQGLLKVSE-EG   80 (173)
Q Consensus        70 ~~~i~~~~~-~g   80 (173)
                      .+++...+. .|
T Consensus       267 d~r~r~wn~~~G  278 (397)
T KOG4283|consen  267 DDRIRVWNMESG  278 (397)
T ss_pred             ccceEEeecccC
Confidence            665555553 55

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=87.44  E-value=10  Score=28.31  Aligned_cols=82  Identities=13%  Similarity=0.266  Sum_probs=48.4

Q ss_pred             ccccceEEccCCcEEEEEeCCCeEEEEc-cCC-cEEEEeccCCccccCCccEEE-cCCCcEEEEeCcCCcCcccceeeec
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG-VTVLVSQFNGSQLRFANDVIE-ASDGSLYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g-~~~~~~~~~~~~~~~~~~l~~-~~dG~~~v~~~~~~~~~~~~~~~~~  126 (173)
                      ..+ .+-++|..+-++.+.....++.++ .+| ++...+...+    ..+.++. ..++.++-                 
T Consensus       116 eIN-am~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtD----YvH~vv~R~~~~qils-----------------  173 (325)
T KOG0649|consen  116 EIN-AMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTD----YVHSVVGRNANGQILS-----------------  173 (325)
T ss_pred             ccc-eeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcc----eeeeeeecccCcceee-----------------
Confidence            346 888897655546666555678888 588 5554443221    3344444 33444433                 


Q ss_pred             ccCCCceEEEEcCCCCeeEEeeccccCc
Q 030700          127 SGEPHGVLLKYDPSTNQTSLVLDGLYFA  154 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p  154 (173)
                       +..+|++-.+|.+|++...+......|
T Consensus       174 -G~EDGtvRvWd~kt~k~v~~ie~yk~~  200 (325)
T KOG0649|consen  174 -GAEDGTVRVWDTKTQKHVSMIEPYKNP  200 (325)
T ss_pred             -cCCCccEEEEeccccceeEEeccccCh
Confidence             335678888888887766666554444

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=87.31  E-value=7.2  Score=32.28  Aligned_cols=59  Identities=15%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             cCccccceEEccCCcEEEEEeCCCeEEEEccC-CcEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030700           48 GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-GVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        48 ~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      ...+. ..+++++.+.++++.....++.+|.+ +.+......     -.|+.++.+|+|.++++.+
T Consensus       259 ~s~v~-~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~ka~-----~~P~~iaWHp~gai~~V~s  318 (545)
T PF11768_consen  259 PSQVI-CCARSPSEDKLVLGCEDGSIILYDTTRGVTLLAKAE-----FIPTLIAWHPDGAIFVVGS  318 (545)
T ss_pred             CCcce-EEecCcccceEEEEecCCeEEEEEcCCCeeeeeeec-----ccceEEEEcCCCcEEEEEc
Confidence            44566 78888887665666555567777754 344444321     3689999999999777643

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=87.27  E-value=9.8  Score=27.99  Aligned_cols=52  Identities=15%  Similarity=0.206  Sum_probs=28.6

Q ss_pred             ccCCcEEEEEeCCCeEEEEcc---CC-cEEEEeccCCcc--ccCCccEEEcCCCcEEEE
Q 030700           58 TKENNVIIVCDSQQGLLKVSE---EG-VTVLVSQFNGSQ--LRFANDVIEASDGSLYFT  110 (173)
Q Consensus        58 ~~~g~l~~v~~~~~~i~~~~~---~g-~~~~~~~~~~~~--~~~~~~l~~~~dG~~~v~  110 (173)
                      +.+|-+ +++......+++++   .. +..+.+...+..  ......+++||.|+++++
T Consensus       191 swn~~m-~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~s  248 (350)
T KOG0641|consen  191 SWNGAM-FASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLAS  248 (350)
T ss_pred             EecCcE-EEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeee
Confidence            345545 55544444444432   22 444443333222  234577899999999987

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=87.14  E-value=1.4  Score=22.15  Aligned_cols=15  Identities=20%  Similarity=0.344  Sum_probs=10.9

Q ss_pred             ceEEEccCCCEEEEE
Q 030700          155 NGVALSEDERFLVVC  169 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~  169 (173)
                      ...+|||||++|+.+
T Consensus        12 ~~p~~SpDGk~i~f~   26 (39)
T PF07676_consen   12 GSPAWSPDGKYIYFT   26 (39)
T ss_dssp             EEEEE-TTSSEEEEE
T ss_pred             cCEEEecCCCEEEEE
Confidence            457899999988775

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]

Probab=86.94  E-value=3.8  Score=32.56  Aligned_cols=21  Identities=29%  Similarity=0.080  Sum_probs=17.9

Q ss_pred             cCcceEEEccCCCEEEEEecC
Q 030700          152 YFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ..|.=|.+|-||++||||++.
T Consensus       389 GGPQMlQLSLDGKRLYVt~SL  409 (476)
T KOG0918|consen  389 GGPQMLQLSLDGKRLYVTNSL  409 (476)
T ss_pred             CCceeEEeccCCcEEEEEchh
Confidence            457779999999999999873

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.89  E-value=18  Score=30.76  Aligned_cols=25  Identities=24%  Similarity=0.324  Sum_probs=16.7

Q ss_pred             ceEEccCCcEEEEEeCCCeEEEEccCC
Q 030700           54 GLTTTKENNVIIVCDSQQGLLKVSEEG   80 (173)
Q Consensus        54 gl~~~~~g~l~~v~~~~~~i~~~~~~g   80 (173)
                      .++.-+++ . |++...+..++++..|
T Consensus       145 Av~~l~e~-~-~vTgsaDKtIklWk~~  169 (745)
T KOG0301|consen  145 AVASLPEN-T-YVTGSADKTIKLWKGG  169 (745)
T ss_pred             eeeecCCC-c-EEeccCcceeeeccCC
Confidence            44555665 5 7777777778777655

>smart00564 PQQ beta-propeller repeat

Probab=86.81  E-value=1.6  Score=20.89  Aligned_cols=14  Identities=29%  Similarity=0.470  Sum_probs=10.9

Q ss_pred             CceEEEEcCCCCee
Q 030700          131 HGVLLKYDPSTNQT  144 (173)
Q Consensus       131 ~~~v~~~d~~~~~~  144 (173)
                      ++.++.+|+++|+.
T Consensus        15 ~g~l~a~d~~~G~~   28 (33)
T smart00564       15 DGTLYALDAKTGEI   28 (33)
T ss_pred             CCEEEEEEcccCcE
Confidence            37899999887764

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=86.50  E-value=4.4  Score=32.66  Aligned_cols=62  Identities=16%  Similarity=0.178  Sum_probs=29.6

Q ss_pred             ccccceEEccCCcEEEEEeCCCe-EEEEc-cCC--cEEEEec-------------cCCcc-ccCCccEEEcCCC-cEEEE
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQG-LLKVS-EEG--VTVLVSQ-------------FNGSQ-LRFANDVIEASDG-SLYFT  110 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~-i~~~~-~~g--~~~~~~~-------------~~~~~-~~~~~~l~~~~dG-~~~v~  110 (173)
                      -+. .|.++.|.|+||+++..++ +...| .|-  .+.....             ..+++ ...|.-|.++-|| ++|||
T Consensus       313 Lit-DI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  313 LIT-DILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             -----EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE
T ss_pred             ceE-eEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEE
Confidence            356 7888899999999998876 55555 232  2222211             11122 2368899999999 59999


Q ss_pred             eC
Q 030700          111 VS  112 (173)
Q Consensus       111 ~~  112 (173)
                      ++
T Consensus       392 nS  393 (461)
T PF05694_consen  392 NS  393 (461)
T ss_dssp             --
T ss_pred             ee
Confidence            64

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=86.48  E-value=15  Score=29.18  Aligned_cols=93  Identities=10%  Similarity=0.129  Sum_probs=43.6

Q ss_pred             eEEEcCCCCEE-EE-cCCC----eEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-----------CeEEE
Q 030700           14 DVSVDGNGVLY-TA-TGDG----WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----------QGLLK   75 (173)
Q Consensus        14 ~l~~~~~g~l~-~~-~~~~----~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----------~~i~~   75 (173)
                      +..++|+|+.+ ++ +.+|    .|+.+|. +|+...-.-...... +++|.++++.+|.....           ..+++
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~-~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~  206 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFS-SVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYR  206 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESE-EEEECTTSSEEEEEECSTTTSS-CCGCCEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccc-eEEEeCCCCEEEEEEeCcccccccCCCCcEEEE
Confidence            45677777543 22 2222    3566665 454332111111233 48999998776655422           23555


Q ss_pred             Ecc-CC-c--EEEEeccCCccccCCccEEEcCCCcEEE
Q 030700           76 VSE-EG-V--TVLVSQFNGSQLRFANDVIEASDGSLYF  109 (173)
Q Consensus        76 ~~~-~g-~--~~~~~~~~~~~~~~~~~l~~~~dG~~~v  109 (173)
                      +.. ++ .  ..+....+. ++ ..-++..++||+..+
T Consensus       207 ~~~gt~~~~d~lvfe~~~~-~~-~~~~~~~s~d~~~l~  242 (414)
T PF02897_consen  207 HKLGTPQSEDELVFEEPDE-PF-WFVSVSRSKDGRYLF  242 (414)
T ss_dssp             EETTS-GGG-EEEEC-TTC-TT-SEEEEEE-TTSSEEE
T ss_pred             EECCCChHhCeeEEeecCC-Cc-EEEEEEecCcccEEE
Confidence            553 33 2  233322211 11 234678889997444

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=86.38  E-value=14  Score=28.98  Aligned_cols=127  Identities=16%  Similarity=0.214  Sum_probs=68.4

Q ss_pred             EEEcCCCCEEEEc-CCCeEEEEcC-CC-------------cEEEeccccCccccceEEcc-----CCcEEEEEeCCCeEE
Q 030700           15 VSVDGNGVLYTAT-GDGWIKRMHP-NG-------------TWEDWHQVGSQSLLGLTTTK-----ENNVIIVCDSQQGLL   74 (173)
Q Consensus        15 l~~~~~g~l~~~~-~~~~i~~~~~-~g-------------~~~~~~~~~~~p~~gl~~~~-----~g~l~~v~~~~~~i~   74 (173)
                      +.+..||.|+.+. .+..+..|-. ++             +...|.+....|.  +. ..     .+.+ .+....++++
T Consensus       241 v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~--i~-~at~~~~~~~~-l~s~SrDktI  316 (406)
T KOG0295|consen  241 VRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPS--IS-EATGSTNGGQV-LGSGSRDKTI  316 (406)
T ss_pred             EEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcc--hh-hccCCCCCccE-EEeecccceE
Confidence            4555588888766 5566666642 22             1122323222222  11 11     2234 3333445666


Q ss_pred             EEc--cCC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030700           75 KVS--EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG  150 (173)
Q Consensus        75 ~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  150 (173)
                      ++.  ..|  +-++...     .++..+++++|-|+.+++..                 .+++|-.+|..+++.......
T Consensus       317 k~wdv~tg~cL~tL~gh-----dnwVr~~af~p~Gkyi~Sca-----------------DDktlrvwdl~~~~cmk~~~a  374 (406)
T KOG0295|consen  317 KIWDVSTGMCLFTLVGH-----DNWVRGVAFSPGGKYILSCA-----------------DDKTLRVWDLKNLQCMKTLEA  374 (406)
T ss_pred             EEEeccCCeEEEEEecc-----cceeeeeEEcCCCeEEEEEe-----------------cCCcEEEEEeccceeeeccCC
Confidence            665  366  3333322     16889999999999888753                 346788888877776555442


Q ss_pred             -ccCcceEEEccCCCEEEEE
Q 030700          151 -LYFANGVALSEDERFLVVC  169 (173)
Q Consensus       151 -~~~p~gi~~~~dg~~lyv~  169 (173)
                       ..+-+.+.|.-+  ..||.
T Consensus       375 h~hfvt~lDfh~~--~p~Vv  392 (406)
T KOG0295|consen  375 HEHFVTSLDFHKT--APYVV  392 (406)
T ss_pred             CcceeEEEecCCC--CceEE
Confidence             223344555433  34554

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=85.95  E-value=2.3  Score=31.88  Aligned_cols=59  Identities=8%  Similarity=0.063  Sum_probs=39.6

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEc-CCCc-EEEeccccCccccceEEccCCcEEEEEeCC
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMH-PNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~-~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      .+..++.+-||++++.+. .+++|..++ .+.+ +....-..+..+ .++|+++-.+ ..+...
T Consensus       252 pGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn-~vAfspd~~l-mAaask  313 (323)
T KOG0322|consen  252 PGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVN-AVAFSPDCEL-MAAASK  313 (323)
T ss_pred             CCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhccee-EEEeCCCCch-hhhccC
Confidence            456789999999999877 777776664 3443 222233446677 9999999666 444333

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=85.90  E-value=13  Score=29.38  Aligned_cols=63  Identities=17%  Similarity=0.220  Sum_probs=31.5

Q ss_pred             cceEEEcC-CCCEEEEcCCCeEEEEc---CC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEE
Q 030700           12 PEDVSVDG-NGVLYTATGDGWIKRMH---PN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK   75 (173)
Q Consensus        12 p~~l~~~~-~g~l~~~~~~~~i~~~~---~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~   75 (173)
                      |+.+.+.. +....+++..|.++.++   .+ +..........+.. .+++++|++++..||....|..
T Consensus       110 ~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~lGhvSml~-dVavS~D~~~IitaDRDEkIRv  177 (390)
T KOG3914|consen  110 PTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPILGHVSMLL-DVAVSPDDQFIITADRDEKIRV  177 (390)
T ss_pred             cceeeeeeccceEEEEeecCCceeeeeecccccCcchhhhhhhhhh-eeeecCCCCEEEEecCCceEEE
Confidence            44444444 23444444444444443   11 33333323334566 8888888888566665543333

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=85.87  E-value=14  Score=31.46  Aligned_cols=100  Identities=19%  Similarity=0.224  Sum_probs=62.4

Q ss_pred             CCcceEEEcCCC-CEEEEcCCCeEEEEcCCCc---EEE---eccccC---ccccceEEccCCcEEEEEeCCCeEEEEcc-
Q 030700           10 NHPEDVSVDGNG-VLYTATGDGWIKRMHPNGT---WED---WHQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~~~g~---~~~---~~~~~~---~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      +=..++-|.|.+ .|..+.++..++.|.++..   ++.   +-+.++   .-. |..++++++. +++....|-+++.. 
T Consensus       268 DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~-g~lw~~n~~~-ii~~g~~Gg~hlWkt  345 (764)
T KOG1063|consen  268 DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFW-GGLWSPNSNV-IIAHGRTGGFHLWKT  345 (764)
T ss_pred             cceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccccccccee-eEEEcCCCCE-EEEecccCcEEEEec
Confidence            334568889988 5666668888888876543   432   222222   235 6778899988 88877766666554 


Q ss_pred             -CCcEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           79 -EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        79 -~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                       +............-+....+++.+|.|.++.+.
T Consensus       346 ~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsv  379 (764)
T KOG1063|consen  346 KDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSV  379 (764)
T ss_pred             cCccceeeccccccccccceeeeecCCCCEEEEe
Confidence             322222222222223467899999999988874

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=85.47  E-value=2.3  Score=20.96  Aligned_cols=28  Identities=14%  Similarity=0.246  Sum_probs=21.0

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEc
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMH   36 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~   36 (173)
                      -....++++.|++..+++. .++.|..||
T Consensus        11 ~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen   11 SSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             SSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            4667889999988766555 778887764

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=84.78  E-value=16  Score=28.17  Aligned_cols=61  Identities=11%  Similarity=0.109  Sum_probs=38.7

Q ss_pred             ccccCccccceEEccCCcEEEEEeCC-CeEEEEc--cCC--cEEEEeccCCccccCCccEEEcCCCcEEEE
Q 030700           45 HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--EEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        45 ~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      ..+-.... .++++.+|.+ +.+... ..++|+.  .+|  ...+.+..+.   .....|+++|+..+..+
T Consensus       178 ~AH~s~Ia-cv~Ln~~Gt~-vATaStkGTLIRIFdt~~g~~l~E~RRG~d~---A~iy~iaFSp~~s~Lav  243 (346)
T KOG2111|consen  178 NAHDSDIA-CVALNLQGTL-VATASTKGTLIRIFDTEDGTLLQELRRGVDR---ADIYCIAFSPNSSWLAV  243 (346)
T ss_pred             EcccCcee-EEEEcCCccE-EEEeccCcEEEEEEEcCCCcEeeeeecCCch---heEEEEEeCCCccEEEE
Confidence            34444556 8899999998 555444 4577776  366  5555544432   35567899998865444

>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A

Probab=84.74  E-value=1.4  Score=22.43  Aligned_cols=24  Identities=29%  Similarity=0.530  Sum_probs=17.2

Q ss_pred             eEEEcCCCCEEEEcCCCeEEEEcCC
Q 030700           14 DVSVDGNGVLYTATGDGWIKRMHPN   38 (173)
Q Consensus        14 ~l~~~~~g~l~~~~~~~~i~~~~~~   38 (173)
                      ++++. +|.+|+.+.++.++.+|++
T Consensus        16 ~~~v~-~g~vyv~~~dg~l~ald~~   39 (40)
T PF13570_consen   16 SPAVA-GGRVYVGTGDGNLYALDAA   39 (40)
T ss_dssp             --EEC-TSEEEEE-TTSEEEEEETT
T ss_pred             CCEEE-CCEEEEEcCCCEEEEEeCC
Confidence            44554 7899999999999999853

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=84.59  E-value=16  Score=28.12  Aligned_cols=57  Identities=23%  Similarity=0.296  Sum_probs=39.1

Q ss_pred             CccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEE-EcCCCCe-eEEeeccc--cCcceEEEccCCCEEEEE
Q 030700           96 ANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLK-YDPSTNQ-TSLVLDGL--YFANGVALSEDERFLVVC  169 (173)
Q Consensus        96 ~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~-~d~~~~~-~~~~~~~~--~~p~gi~~~~dg~~lyv~  169 (173)
                      ..-+++.-+|.+..|.+                 ..|++.| ||..+|+ +..+..|.  ....-|+|||+..+|.|+
T Consensus       184 Iacv~Ln~~Gt~vATaS-----------------tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~Lavs  244 (346)
T KOG2111|consen  184 IACVALNLQGTLVATAS-----------------TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVS  244 (346)
T ss_pred             eeEEEEcCCccEEEEec-----------------cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEE
Confidence            45578888998888743                 3467765 6777665 34444443  444689999999888775

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=84.53  E-value=3.9  Score=32.43  Aligned_cols=55  Identities=16%  Similarity=0.189  Sum_probs=37.8

Q ss_pred             eEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccC---ccccceEEccCCcEEEEEeC
Q 030700           14 DVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus        14 ~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~---~p~~gl~~~~~g~l~~v~~~   69 (173)
                      -++|+|++.+..+. .+|.|+.|+. .|+++.......   ... .++|++.|+.|..++.
T Consensus       392 rvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~-s~~W~~sG~~Llsadk  451 (459)
T KOG0288|consen  392 RVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAIT-SLSWNPSGSGLLSADK  451 (459)
T ss_pred             eeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceE-EEEEcCCCchhhcccC
Confidence            37888988766555 8999999985 567766544332   345 7888888877454443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=83.54  E-value=8.3  Score=31.25  Aligned_cols=40  Identities=13%  Similarity=0.086  Sum_probs=23.2

Q ss_pred             CeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeC
Q 030700           71 QGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVS  112 (173)
Q Consensus        71 ~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~  112 (173)
                      +|++.++. +..+.++...-.  ..-.++|+++++|+..+|.+
T Consensus       272 nGtVSlWSP~skePLvKiLcH--~g~V~siAv~~~G~YMaTtG  312 (545)
T KOG1272|consen  272 NGTVSLWSPNSKEPLVKILCH--RGPVSSIAVDRGGRYMATTG  312 (545)
T ss_pred             CceEEecCCCCcchHHHHHhc--CCCcceEEECCCCcEEeecc
Confidence            45666653 223333332111  12468899999999888853

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=83.29  E-value=26  Score=29.46  Aligned_cols=129  Identities=19%  Similarity=0.203  Sum_probs=66.2

Q ss_pred             CCCEEEEc-CCC-----eEEEEcCC-CcEEEecccc--CccccceEEccCCcEEEEEeCCC-------eEEEEcc-CC-c
Q 030700           20 NGVLYTAT-GDG-----WIKRMHPN-GTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQQ-------GLLKVSE-EG-V   81 (173)
Q Consensus        20 ~g~l~~~~-~~~-----~i~~~~~~-g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~~~~~-------~i~~~~~-~g-~   81 (173)
                      +|.||+.. .+|     .+.++|+. .+|....+-.  .... |.+. -+|++ |++....       .+.+.|+ .+ .
T Consensus       380 ~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~-gv~~-~~g~i-Yi~GG~~~~~~~l~sve~YDP~t~~W  456 (571)
T KOG4441|consen  380 DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGH-GVAV-LGGKL-YIIGGGDGSSNCLNSVECYDPETNTW  456 (571)
T ss_pred             CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeee-EEEE-ECCEE-EEEcCcCCCccccceEEEEcCCCCce
Confidence            78899655 332     47788864 4566543222  1223 3333 56677 9886532       3555665 33 2


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--ccCcceEEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVAL  159 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p~gi~~  159 (173)
                      +......   ....-.+++.- +|.||+.=+...            .....++.+|||.+.+-..+..-  ....-|++.
T Consensus       457 ~~~~~M~---~~R~~~g~a~~-~~~iYvvGG~~~------------~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~  520 (571)
T KOG4441|consen  457 TLIAPMN---TRRSGFGVAVL-NGKIYVVGGFDG------------TSALSSVERYDPETNQWTMVAPMTSPRSAVGVVV  520 (571)
T ss_pred             eecCCcc---cccccceEEEE-CCEEEEECCccC------------CCccceEEEEcCCCCceeEcccCccccccccEEE
Confidence            3222211   11233445544 678999733211            01223699999998776666421  122223333


Q ss_pred             ccCCCEEEEE
Q 030700          160 SEDERFLVVC  169 (173)
Q Consensus       160 ~~dg~~lyv~  169 (173)
                        .+..+|+.
T Consensus       521 --~~~~ly~v  528 (571)
T KOG4441|consen  521 --LGGKLYAV  528 (571)
T ss_pred             --ECCEEEEE
Confidence              33457765

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=82.93  E-value=3.7  Score=22.88  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=22.1

Q ss_pred             cceEEEcCCCCEEEEcC--------CCeEEEEcCCCcEE
Q 030700           12 PEDVSVDGNGVLYTATG--------DGWIKRMHPNGTWE   42 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~--------~~~i~~~~~~g~~~   42 (173)
                      ...+++.|+|+|+++..        +..|.|++++|.+-
T Consensus         3 ~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DGsLD   41 (55)
T TIGR02608         3 AYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADGSLD   41 (55)
T ss_pred             eEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCCCcc
Confidence            46789999999886551        23477888888753

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=82.90  E-value=9.1  Score=32.91  Aligned_cols=122  Identities=16%  Similarity=0.128  Sum_probs=68.2

Q ss_pred             EEcCCCeEEEEcCCC--c---EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc---CC-cEEEEeccCCccccC
Q 030700           25 TATGDGWIKRMHPNG--T---WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE---EG-VTVLVSQFNGSQLRF   95 (173)
Q Consensus        25 ~~~~~~~i~~~~~~g--~---~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~---~g-~~~~~~~~~~~~~~~   95 (173)
                      ++..+|.|-.||..-  +   +..+.+.....+ .+.|++-.-.++++...++.+++.+   +. ...+...     -.+
T Consensus       105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~-~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~n-----SES  178 (839)
T KOG0269|consen  105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSAN-KLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSN-----SES  178 (839)
T ss_pred             eecCCCcEEEEecCccccchhhhHhhhhcccee-eeeeccCCccEEEecCCCceEEEEeeeccccccccccc-----chh
Confidence            444678888888533  1   223445555667 8888875433367766667666552   22 3333221     247


Q ss_pred             CccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc----ceEEEccCCCEEEEEe
Q 030700           96 ANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA----NGVALSEDERFLVVCE  170 (173)
Q Consensus        96 ~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p----~gi~~~~dg~~lyv~~  170 (173)
                      ..++.+.| .+..|++-.                 .+|.|..+|..  ++......+..=    --+-|+|++  -|++.
T Consensus       179 iRDV~fsp~~~~~F~s~~-----------------dsG~lqlWDlR--qp~r~~~k~~AH~GpV~c~nwhPnr--~~lAT  237 (839)
T KOG0269|consen  179 IRDVKFSPGYGNKFASIH-----------------DSGYLQLWDLR--QPDRCEKKLTAHNGPVLCLNWHPNR--EWLAT  237 (839)
T ss_pred             hhceeeccCCCceEEEec-----------------CCceEEEeecc--CchhHHHHhhcccCceEEEeecCCC--ceeee
Confidence            78899998 466666532                 34788888874  333332222222    236667854  34554


Q ss_pred             cCC
Q 030700          171 SWK  173 (173)
Q Consensus       171 ~~~  173 (173)
                      .+|
T Consensus       238 GGR  240 (839)
T KOG0269|consen  238 GGR  240 (839)
T ss_pred             cCC
Confidence            444

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=82.85  E-value=26  Score=29.12  Aligned_cols=15  Identities=20%  Similarity=0.151  Sum_probs=12.4

Q ss_pred             eEEEccCCCEEEEEe
Q 030700          156 GVALSEDERFLVVCE  170 (173)
Q Consensus       156 gi~~~~dg~~lyv~~  170 (173)
                      +++++|+.+.+|+.-
T Consensus       391 ~~A~Dp~~g~~yvp~  405 (527)
T TIGR03075       391 PMAYSPKTGLFYVPA  405 (527)
T ss_pred             CceECCCCCEEEEec
Confidence            488999999999854

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=82.47  E-value=36  Score=30.51  Aligned_cols=41  Identities=20%  Similarity=0.211  Sum_probs=32.9

Q ss_pred             CCceEEEE----cCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700          130 PHGVLLKY----DPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       130 ~~~~v~~~----d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .+|.|..+    ++++..++.+..--.....++||||+..|.++.
T Consensus        95 ~~Gdi~~~~~~~~~~~~~~E~VG~vd~GI~a~~WSPD~Ella~vT  139 (928)
T PF04762_consen   95 ASGDIILVREDPDPDEDEIEIVGSVDSGILAASWSPDEELLALVT  139 (928)
T ss_pred             CCceEEEEEccCCCCCceeEEEEEEcCcEEEEEECCCcCEEEEEe
Confidence            34788888    887778888776667788999999999888764

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=82.44  E-value=20  Score=27.52  Aligned_cols=136  Identities=17%  Similarity=0.185  Sum_probs=61.0

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccccC-----ccccceEEccCCcEEEEEeCCCeEEEEccCC---
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVGS-----QSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~-----~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---   80 (173)
                      ....+|+|..+.+-|+....+.|++-.-.| .+........     .-+ .+.++.+ +. |++... +++....||   
T Consensus        17 ~~l~dV~F~d~~~G~~VG~~g~il~T~DGG~tW~~~~~~~~~~~~~~l~-~I~f~~~-~g-~ivG~~-g~ll~T~DgG~t   92 (302)
T PF14870_consen   17 KPLLDVAFVDPNHGWAVGAYGTILKTTDGGKTWQPVSLDLDNPFDYHLN-SISFDGN-EG-WIVGEP-GLLLHTTDGGKT   92 (302)
T ss_dssp             S-EEEEEESSSS-EEEEETTTEEEEESSTTSS-EE-----S-----EEE-EEEEETT-EE-EEEEET-TEEEEESSTTSS
T ss_pred             CceEEEEEecCCEEEEEecCCEEEEECCCCccccccccCCCccceeeEE-EEEecCC-ce-EEEcCC-ceEEEecCCCCC
Confidence            356778888767777766677788774233 3555432211     234 6666543 45 665433 455555544   


Q ss_pred             cEEEE--eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceE
Q 030700           81 VTVLV--SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV  157 (173)
Q Consensus        81 ~~~~~--~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi  157 (173)
                      .+.+.  ..+++    .+..+....++.++++.                  ..|.||+-.-.+..=+.+. ......+.+
T Consensus        93 W~~v~l~~~lpg----s~~~i~~l~~~~~~l~~------------------~~G~iy~T~DgG~tW~~~~~~~~gs~~~~  150 (302)
T PF14870_consen   93 WERVPLSSKLPG----SPFGITALGDGSAELAG------------------DRGAIYRTTDGGKTWQAVVSETSGSINDI  150 (302)
T ss_dssp             -EE----TT-SS-----EEEEEEEETTEEEEEE------------------TT--EEEESSTTSSEEEEE-S----EEEE
T ss_pred             cEEeecCCCCCC----CeeEEEEcCCCcEEEEc------------------CCCcEEEeCCCCCCeeEcccCCcceeEeE
Confidence            33332  12232    33444444455544432                  1256666544322222322 223445566


Q ss_pred             EEccCCCEEEEEec
Q 030700          158 ALSEDERFLVVCES  171 (173)
Q Consensus       158 ~~~~dg~~lyv~~~  171 (173)
                      ..++||+++.|+..
T Consensus       151 ~r~~dG~~vavs~~  164 (302)
T PF14870_consen  151 TRSSDGRYVAVSSR  164 (302)
T ss_dssp             EE-TTS-EEEEETT
T ss_pred             EECCCCcEEEEECc
Confidence            77788887766644

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=81.86  E-value=32  Score=29.41  Aligned_cols=80  Identities=14%  Similarity=0.117  Sum_probs=40.7

Q ss_pred             CCCeEEEEcCC-Cc-EEEeccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CCcEEEEeccCCccccCCccEEEcC
Q 030700           28 GDGWIKRMHPN-GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EGVTVLVSQFNGSQLRFANDVIEAS  103 (173)
Q Consensus        28 ~~~~i~~~~~~-g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~  103 (173)
                      .+-.|..||.. ++ ..++....+... +++++++|+. ..+--.++ +....+ .+.+.+... .+..-.+-..|.+.=
T Consensus       698 yd~Ti~lWDl~~~~~~~~l~gHtdqIf-~~AWSpdGr~-~AtVcKDg~~rVy~Prs~e~pv~Eg-~gpvgtRgARi~wac  774 (1012)
T KOG1445|consen  698 YDSTIELWDLANAKLYSRLVGHTDQIF-GIAWSPDGRR-IATVCKDGTLRVYEPRSREQPVYEG-KGPVGTRGARILWAC  774 (1012)
T ss_pred             ccceeeeeehhhhhhhheeccCcCcee-EEEECCCCcc-eeeeecCceEEEeCCCCCCCccccC-CCCccCcceeEEEEe
Confidence            45566666642 22 223334455677 9999999988 43332333 444444 333333221 111112334455666


Q ss_pred             CCcEEEE
Q 030700          104 DGSLYFT  110 (173)
Q Consensus       104 dG~~~v~  110 (173)
                      ||++.++
T Consensus       775 dgr~viv  781 (1012)
T KOG1445|consen  775 DGRIVIV  781 (1012)
T ss_pred             cCcEEEE
Confidence            7775554

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=81.07  E-value=17  Score=34.32  Aligned_cols=52  Identities=15%  Similarity=0.300  Sum_probs=29.7

Q ss_pred             ceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEE
Q 030700           13 EDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIV   66 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v   66 (173)
                      .||..+++|..|-- .+++||++++. ++|.........+.+.|....||++ |.
T Consensus       366 Tgv~~~~~ge~lRl-Hd~~LY~~d~~~~~Wk~~~~~~d~~~S~Ls~qgdG~l-YA  418 (1774)
T PF11725_consen  366 TGVHTDPDGEQLRL-HDDRLYQFDPNTARWKPPPDKSDTPFSSLSRQGDGKL-YA  418 (1774)
T ss_pred             hccccCCCCCeEEe-ecCceeeeccccceecCCCCcccchhhhhcccCCCce-Ee
Confidence            34555555554421 34678888764 4555432333344446777788888 86

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)

Probab=80.98  E-value=23  Score=27.14  Aligned_cols=32  Identities=22%  Similarity=0.360  Sum_probs=23.9

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTW   41 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~   41 (173)
                      ....+|..+++|.++++. ....|+++++ +|++
T Consensus       144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I  177 (299)
T PF14269_consen  144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKI  177 (299)
T ss_pred             cEeeeeeecCCccEEEEecccCEEEEEECCCCcE
Confidence            455678888899988888 5677999984 5554

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=80.78  E-value=33  Score=28.89  Aligned_cols=111  Identities=19%  Similarity=0.270  Sum_probs=58.3

Q ss_pred             CCCEEEEc-CC------CeEEEEcC-CCcEEEeccc--cCccccceEEccCCcEEEEEeCCC------eEEEEccCC--c
Q 030700           20 NGVLYTAT-GD------GWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCDSQQ------GLLKVSEEG--V   81 (173)
Q Consensus        20 ~g~l~~~~-~~------~~i~~~~~-~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~~------~i~~~~~~g--~   81 (173)
                      +|.||+.. .+      ..++++|+ .++|..+.+-  ...-. |++. -+|.+ |+....+      .+-+.|+..  .
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~-l~g~i-YavGG~dg~~~l~svE~YDp~~~~W  408 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDF-GVAV-LDGKL-YAVGGFDGEKSLNSVECYDPVTNKW  408 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccc-eeEE-ECCEE-EEEeccccccccccEEEecCCCCcc
Confidence            67899766 33      24778886 4566664321  11223 4444 45566 8876443      355666533  3


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      +.++.....   ..-.+++. -+|.+|+.-+....           ...-.++.+|||.+.+-+...
T Consensus       409 ~~va~m~~~---r~~~gv~~-~~g~iYi~GG~~~~-----------~~~l~sve~YDP~t~~W~~~~  460 (571)
T KOG4441|consen  409 TPVAPMLTR---RSGHGVAV-LGGKLYIIGGGDGS-----------SNCLNSVECYDPETNTWTLIA  460 (571)
T ss_pred             cccCCCCcc---eeeeEEEE-ECCEEEEEcCcCCC-----------ccccceEEEEcCCCCceeecC
Confidence            333322111   12233332 37899998433111           002258999999987654443

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=80.57  E-value=28  Score=27.85  Aligned_cols=129  Identities=11%  Similarity=0.048  Sum_probs=64.2

Q ss_pred             ceEEEcC-CCCEEEEc-CCCeEEEEc-CCCcEE--------EeccccCccccceEEccCC-cEEEEEeCCCeEEEEc--c
Q 030700           13 EDVSVDG-NGVLYTAT-GDGWIKRMH-PNGTWE--------DWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS--E   78 (173)
Q Consensus        13 ~~l~~~~-~g~l~~~~-~~~~i~~~~-~~g~~~--------~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~--~   78 (173)
                      -.++|.| +.....+. .+-.|..|. +++.+.        .+..+..... -++++|.- ++ ..+......+.++  .
T Consensus        85 LDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg-~V~wHPtA~NV-Llsag~Dn~v~iWnv~  162 (472)
T KOG0303|consen   85 LDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVG-LVQWHPTAPNV-LLSAGSDNTVSIWNVG  162 (472)
T ss_pred             cccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEE-EEeecccchhh-HhhccCCceEEEEecc
Confidence            3467777 45566554 555677776 444221        1111222334 45566542 34 3333333344444  2


Q ss_pred             CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcce
Q 030700           79 EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANG  156 (173)
Q Consensus        79 ~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~g  156 (173)
                      +|...+.-..+    .....+.+..||.+++|.-                 .+.+|-.+||.++++..-.  .....|.-
T Consensus       163 tgeali~l~hp----d~i~S~sfn~dGs~l~Ttc-----------------kDKkvRv~dpr~~~~v~e~~~heG~k~~R  221 (472)
T KOG0303|consen  163 TGEALITLDHP----DMVYSMSFNRDGSLLCTTC-----------------KDKKVRVIDPRRGTVVSEGVAHEGAKPAR  221 (472)
T ss_pred             CCceeeecCCC----CeEEEEEeccCCceeeeec-----------------ccceeEEEcCCCCcEeeecccccCCCcce
Confidence            55322221111    1345688889999888732                 3468888898877643222  11233334


Q ss_pred             EEEccCCC
Q 030700          157 VALSEDER  164 (173)
Q Consensus       157 i~~~~dg~  164 (173)
                      ..|-.+|+
T Consensus       222 aifl~~g~  229 (472)
T KOG0303|consen  222 AIFLASGK  229 (472)
T ss_pred             eEEeccCc
Confidence            44555555

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=80.43  E-value=33  Score=28.63  Aligned_cols=139  Identities=13%  Similarity=0.209  Sum_probs=67.8

Q ss_pred             CcceEEEcC-CCCEEEEc--CCCeEEEEcC-CCcEE-EeccccC-----ccccce-EEccCCcEEEEEeCCCeEEEEcc-
Q 030700           11 HPEDVSVDG-NGVLYTAT--GDGWIKRMHP-NGTWE-DWHQVGS-----QSLLGL-TTTKENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~~~--~~~~i~~~~~-~g~~~-~~~~~~~-----~p~~gl-~~~~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      .|+-+..+. +..|.+.+  ...++|++|. -|+++ .|...-.     .|.+-. ..-+. .. .|.-...+++++|+ 
T Consensus       468 dp~K~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvvVqy~p~~kf~qmt~e-qt-lvGlS~~svFrIDPR  545 (776)
T COG5167         468 DPEKIMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVVVQYNPYFKFQQMTDE-QT-LVGLSDYSVFRIDPR  545 (776)
T ss_pred             ChhhceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcceeecCCchhHHhcCcc-ce-EEeecccceEEeccc
Confidence            355555554 45555555  4567899985 45543 3321111     111000 01133 33 44445567999996 


Q ss_pred             -CCcEEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcc
Q 030700           79 -EGVTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFAN  155 (173)
Q Consensus        79 -~g~~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~  155 (173)
                       .|....+.. -+-...+..+......+|.+-++...                  |-|-.||--+-+......+ .....
T Consensus       546 ~~gNKi~v~esKdY~tKn~Fss~~tTesGyIa~as~k------------------GDirLyDRig~rAKtalP~lG~aIk  607 (776)
T COG5167         546 ARGNKIKVVESKDYKTKNKFSSGMTTESGYIAAASRK------------------GDIRLYDRIGKRAKTALPGLGDAIK  607 (776)
T ss_pred             ccCCceeeeeehhccccccccccccccCceEEEecCC------------------CceeeehhhcchhhhcCccccccee
Confidence             452211111 11111234455666677877666432                  4555555322122222222 24456


Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      +|..+.+|+++..+
T Consensus       608 ~idvta~Gk~ilaT  621 (776)
T COG5167         608 HIDVTANGKHILAT  621 (776)
T ss_pred             eeEeecCCcEEEEe
Confidence            88889999977654

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=80.38  E-value=27  Score=27.66  Aligned_cols=102  Identities=14%  Similarity=0.171  Sum_probs=63.3

Q ss_pred             CCccCCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC-c
Q 030700            6 EGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG-V   81 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g-~   81 (173)
                      .|-....+.+.|.+.+.+|-+..+..|.+||. .|+...-......-+ .+...+.-++ ++|......+++ |+ .+ -
T Consensus       257 ~GHt~~Vs~V~w~d~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~-~i~~~~~~~L-l~~gssdr~irl~DPR~~~g  334 (423)
T KOG0313|consen  257 EGHTEPVSSVVWSDATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLN-CISYSPLSKL-LASGSSDRHIRLWDPRTGDG  334 (423)
T ss_pred             cccccceeeEEEcCCCceEeecccceEEEEEeecccceeeeecCccee-Eeecccccce-eeecCCCCceeecCCCCCCC
Confidence            44456677899999889998889999999995 444333223333445 8888888788 777666555554 44 33 2


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                      ..+...+-+.. +....+..+|... ++++
T Consensus       335 s~v~~s~~gH~-nwVssvkwsp~~~~~~~S  363 (423)
T KOG0313|consen  335 SVVSQSLIGHK-NWVSSVKWSPTNEFQLVS  363 (423)
T ss_pred             ceeEEeeecch-hhhhheecCCCCceEEEE
Confidence            22222222222 4677788888654 4443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	173
2v91_A	302	Structure Of Strictosidine Synthase In Complex With		4e-07
2fp8_A	322	Structure Of Strictosidine Synthase, The Biosynthet		4e-07
2fpb_A	322	Structure Of Strictosidine Synthase, The Biosynthet		6e-05

>pdb|2V91|A Chain A, Structure Of Strictosidine Synthase In Complex With Strictosidine Length = 302

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 30  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 89
Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 90  CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 149
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E
Sbjct: 150 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 194

>pdb|2FP8|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 74/165 (44%), Gaps = 12/165 (7%)
Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLG----LTTTKENNVIIVCD 68
           DG  + Y     G++   + +  W     E+      + L G    ++   +NN + + D
Sbjct: 39  DGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQLYIVD 98
Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +        +
Sbjct: 99  CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIM 158
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
            + +  G L+KYDPST +T+L+L  L+   G  +S D  F++V E
Sbjct: 159 DTSDKTGRLIKYDPSTKETTLLLKELHVPGGAEVSADSSFVLVAE 203

>pdb|2FPB|A Chain A, Structure Of Strictosidine Synthase, The Biosynthetic Entry To The Monoterpenoid Indole Alkaloid Family Length = 322

Iteration: 1
 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 43/165 (26%), Positives = 68/165 (41%), Gaps = 12/165 (7%)
Query: 18  DGNGVLYTATGDGWIKRMHPNGTW-----EDWHQVGSQSLLGLTT----TKENNVIIVCD 68
           DG    Y     G++   + +  W     E+      + L G T       +NN   + D
Sbjct: 39  DGRVXKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQXYIVD 98
Query: 69  SQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV-IEASDGSLYFTVSSTKFTPAEYYLDL 125
               L  V  EG   T L +  +G   ++   V ++   G +YFT  ST +         
Sbjct: 99  CYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIX 158
Query: 126 VSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE 170
            + +  G L KYDPST +T+L+   L+   G  +S D  F++V E
Sbjct: 159 DTSDKTGRLXKYDPSTKETTLLXKELHVPGGAEVSADSSFVLVAE 203

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	173
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	1e-45
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	2e-18
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	4e-18
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	4e-18
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	9e-17
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	3e-13
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	1e-08
2p4o_A	306	Hypothetical protein; putative lactonase, structur	2e-07
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	2e-06
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-05
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	2e-05
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-04
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	1e-04

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* Length = 322

 Score =  151 bits (382), Expect = 1e-45
 Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 24/195 (12%)

Query: 3   KLGEGIVNHPEDVSVDGNG-VLYTATGDGWIKRMH-PNGTWEDWHQVGSQSL-------- 52
            L E     P   + D      YT+  DG + +   PN  + D+                
Sbjct: 12  ILIEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENST 71

Query: 53  -----------LGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDV 99
                        ++   +NN + + D    L  V  EG   T L +  +G   ++   V
Sbjct: 72  DAEKRPLCGRTYDISYNLQNNQLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAV 131

Query: 100 -IEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA 158
            ++   G +YFT  ST +        + + +  G L+KYDPST +T+L+L  L+   G  
Sbjct: 132 TVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPGGAE 191

Query: 159 LSEDERFLVVCESWK 173
           +S D  F++V E   
Sbjct: 192 VSADSSFVLVAEFLS 206

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... Length = 314

 Score = 79.8 bits (197), Expect = 2e-18
 Identities = 36/183 (19%), Positives = 58/183 (31%), Gaps = 15/183 (8%)

Query: 3   KLGEGIVNHPE-DVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSL----LGLT 56
              EG V     D  +    V       G I R+    G      +           G  
Sbjct: 18  PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQ 77

Query: 57  TTKENNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST 114
             ++ N + V D + GLL V  +G    +      G +++  ND     +G+L+ T  + 
Sbjct: 78  CDRDANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWIT--AP 135

Query: 115 KFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE----RFLVVCE 170
               A         E  G +  +     Q   V     F NG+A+          L+V E
Sbjct: 136 AGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQVDTAFQFPNGIAVRHMNDGRPYQLIVAE 194

Query: 171 SWK 173
           +  
Sbjct: 195 TPT 197

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} Length = 305

 Score = 78.6 bits (194), Expect = 4e-18
 Identities = 29/170 (17%), Positives = 62/170 (36%), Gaps = 8/170 (4%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
              EG              ++++      +     +GT +      + +  G     +  
Sbjct: 45  TWSEGPAWWE-----AQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQR 98

Query: 63  VIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY 121
           ++     ++ + +   +G   +LV ++ G +L   ND+I A DG+++FT           
Sbjct: 99  LVHCEHGRRAITRSDADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQ 158

Query: 122 YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
                    H  + +  P  +     +  L   NG+A S DE+ L V ++
Sbjct: 159 GCPADPELAHHSVYRLPPDGSPL-QRMADLDHPNGLAFSPDEQTLYVSQT 207

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* Length = 355

 Score = 79.1 bits (194), Expect = 4e-18
 Identities = 36/199 (18%), Positives = 66/199 (33%), Gaps = 33/199 (16%)

Query: 6   EGIVNHPEDVSVDGNGVLYTATGDGWIKRMH----------------PNGTWEDWHQVGS 49
           +GI N  ED+ +  NG+ + ++G  +   M                       +   +G+
Sbjct: 46  KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN 105

Query: 50  QSLLGLTTTKENNVIIVCDSQQGLLKVS---------------EEGVTVLVSQFNGSQLR 94
              +        +  I  D+   LL V+               EE   + +       L 
Sbjct: 106 TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP 165

Query: 95  FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA 154
             ND++       Y T       P     ++  G     +  Y P  N   +V +G  FA
Sbjct: 166 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP--NDVRVVAEGFDFA 223

Query: 155 NGVALSEDERFLVVCESWK 173
           NG+ +S D +++ + E   
Sbjct: 224 NGINISPDGKYVYIAELLA 242

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} Length = 296

 Score = 74.7 bits (184), Expect = 9e-17
 Identities = 32/168 (19%), Positives = 52/168 (30%), Gaps = 9/168 (5%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN 62
              EG V  P       + V+++            +G              G    K+ +
Sbjct: 28  TWTEGPVYVP-----ARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGH 81

Query: 63  VIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE 120
           +I      + L +  E G     +   F G +L   NDV  A DGSL+F+  +      E
Sbjct: 82  LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPE 141

Query: 121 YYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV 168
                    P   + +  P    +   +      NG+A       LV 
Sbjct: 142 EGYGGEMELPGRWVFRLAPDGTLS-APIRDRVKPNGLAFLPSGNLLVS 188

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A Length = 333

 Score = 65.1 bits (159), Expect = 3e-13
 Identities = 36/181 (19%), Positives = 61/181 (33%), Gaps = 36/181 (19%)

Query: 4   LGEGIVNHPEDVSVDGNGVLYTATGDGW-------IKRMHPNGTWEDWHQVG-SQSLLGL 55
             EG+         D  G L+              I +++P         V    +   +
Sbjct: 46  QLEGLN-------FDRQGQLF------LLDVFEGNIFKINPETKEIKRPFVSHKANPAAI 92

Query: 56  TTTKENNVIIVC----DSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV 111
              K+  + +       S  G+   +E G  +     + S     +D++  S G  YFT 
Sbjct: 93  KIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFT- 151

Query: 112 SSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
                    Y     S  P G +    P     + ++  +  ANG+ALS DE+ L V E+
Sbjct: 152 -----DFRGY-----STNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTET 201

Query: 172 W 172
            
Sbjct: 202 T 202

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* Length = 299

 Score = 51.6 bits (124), Expect = 1e-08
 Identities = 20/187 (10%), Positives = 59/187 (31%), Gaps = 30/187 (16%)

Query: 10  NHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSL-LGLTTTKENNVIIVC 67
                +++  +G ++ T      I R+   G  +++      S   G+T     ++    
Sbjct: 57  AKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPYGITEGPNGDIWFTE 116

Query: 68  DSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST----KFTPA---- 119
            +   + +++++G          ++  + + +   SD +L+FT +      + T +    
Sbjct: 117 MNGNRIGRITDDGKIREYE--LPNKGSYPSFITLGSDNALWFTENQNNAIGRITESGDIT 174

Query: 120 EYYLDLVSGEPHGV-----------------LLKYDPSTNQTSLVL-DGLYFANGVALSE 161
           E+ +   +  P G+                 + +   S   T   +       + +    
Sbjct: 175 EFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITTSGEITEFKIPTPNARPHAITAGA 234

Query: 162 DERFLVV 168
                  
Sbjct: 235 GIDLWFT 241

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 Length = 306

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 11/162 (6%)

Query: 12  PEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ 70
            E+++   +G ++ T    G I  + P+G  +    V  +   GL  T   +++    + 
Sbjct: 34  LENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDLVATGWNA 92

Query: 71  QGLLKVSEEGVTVLVSQF-NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE 129
             +  VS       V          F N +   SD       S        + +D+V   
Sbjct: 93  DSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAI---WLIDVVQPS 149

Query: 130 PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES 171
               L    P   +++       F     L     FL V  +
Sbjct: 150 GSIWLE--HPMLARSNSESV---FPAANGLKRFGNFLYVSNT 186

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} Length = 300

 Score = 45.8 bits (109), Expect = 2e-06
 Identities = 21/139 (15%), Positives = 52/139 (37%), Gaps = 12/139 (8%)

Query: 5   GEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDW-HQVGSQSLLGLTTTKENN 62
                ++P  +++  +  L+ T   +  I R+   G  E++     + + +G+T+  +  
Sbjct: 141 LPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYPLPTNAAAPVGITSGNDGA 200

Query: 63  VIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST----KFTP 118
           +  V      + +++  G          +     + +    +  ++FT        + T 
Sbjct: 201 LWFVEIMGNKIGRITTTGEISEYDI--PTPNARPHAITAGKNSEIWFTEWGANQIGRITN 258

Query: 119 A----EYYLDLVSGEPHGV 133
                EY L   + EPHG+
Sbjct: 259 DNTIQEYQLQTENAEPHGI 277

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 42.6 bits (101), Expect = 2e-05
 Identities = 21/130 (16%), Positives = 46/130 (35%), Gaps = 14/130 (10%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLYTA-TGDGWIKRMHPNGTWEDWHQVGSQSL---LGLTTT 58
            L    +N P+ V+VD +G +Y   T +  + ++      +    +    +    G+   
Sbjct: 143 VLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQ--VVLPFTDITAPWGIAVD 200

Query: 59  KENNVIIVCDSQQG-LLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS---- 113
           +    + V +     ++K+     T   +    + L     V   SD ++Y         
Sbjct: 201 EAGT-VYVTEHNTNQVVKLLAGSTT--STVLPFTGLNTPLAVAVDSDRTVYVADRGNDRV 257

Query: 114 TKFTPAEYYL 123
            K T  E++ 
Sbjct: 258 VKLTSLEHHH 267

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A Length = 270

 Score = 42.2 bits (100), Expect = 2e-05
 Identities = 28/195 (14%), Positives = 58/195 (29%), Gaps = 30/195 (15%)

Query: 5   GEGIVNHPEDVSVDGNGVLYTA-TGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNV 63
               +  P+ ++VDG G +Y     +  +     +         G     GL    +  V
Sbjct: 62  PFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAV 121

Query: 64  IIVCDSQQGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSST----KFTPA 119
            +       ++K++        +    + L   + V   + G++Y T +      K    
Sbjct: 122 YVADRGNNRVVKLAAGS--KTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAE 179

Query: 120 EYYLDLVSG----EPHGV-----------------LLKYDPSTN-QTSLVLDGLYFANGV 157
                ++       P G+                 ++K    +   T L   GL     V
Sbjct: 180 SNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAV 239

Query: 158 ALSEDERFLVVCESW 172
           A+  D   + V +  
Sbjct: 240 AVDSDRT-VYVADRG 253

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 26/113 (23%), Positives = 42/113 (37%), Gaps = 12/113 (10%)

Query: 3   KLGEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWEDWHQVGSQSLL----GLTT 57
           K G  I+ HP  V+VD  G +         +     NG     H+ G    L    G+  
Sbjct: 114 KFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV--LHKFGCSKHLEFPNGVVV 171

Query: 58  TKENNVIIVCDSQQGLLKV-SEEGVTVLVSQFNGS-QLRFANDVIEASDGSLY 108
             +   I + D++   +KV + EG    + Q  G     +   V   S+G + 
Sbjct: 172 NDKQE-IFISDNRAHCVKVFNYEG--QYLRQIGGEGITNYPIGVGINSNGEIL 221

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 Length = 286

 Score = 40.2 bits (95), Expect = 1e-04
 Identities = 26/143 (18%), Positives = 50/143 (34%), Gaps = 16/143 (11%)

Query: 5   GEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH---PNGTW-EDWHQVGSQSLLGLTTTKE 60
            +  + +P  V+V  N      T      ++      G +   +     Q   G+T   +
Sbjct: 72  RDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNK 131

Query: 61  NNVIIVCDSQQGLLKVSEEGVTVLVSQFNGS-QLRFANDVIEASDGSLYFTVSST----K 115
             +I+V      ++   + G   ++ +F  S  L F N V+      ++ + +       
Sbjct: 132 GRIIVVECKVMRVIIFDQNG--NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV 189

Query: 116 FTPAEYYLDLVSGE-----PHGV 133
           F     YL  + GE     P GV
Sbjct: 190 FNYEGQYLRQIGGEGITNYPIGV 212

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	173
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.91
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.91
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.86
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.85
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.85
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.82
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.81
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.8
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.8
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.79
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.79
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.78
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.78
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.78
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.78
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.77
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.77
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.76
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.76
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.76
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.76
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.75
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.75
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.75
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.75
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.74
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	99.74
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.73
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	99.72
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	99.72
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.72
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	99.72
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	99.72
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	99.71
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.71
3v65_B	386	Low-density lipoprotein receptor-related protein;	99.71
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	99.71
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	99.7
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.7
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.7
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.7
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.69
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.69
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	99.68
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.68
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.67
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.67
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.66
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.66
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.63
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.63
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	99.63
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.62
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.62
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.58
3kya_A	496	Putative phosphatase; structural genomics, joint c	99.57
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.55
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.55
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	99.54
2p4o_A	306	Hypothetical protein; putative lactonase, structur	99.53
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.52
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	99.52
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	99.52
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.5
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	99.48
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.48
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.47
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.45
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	99.43
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.41
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.4
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	99.39
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.3
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.3
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.3
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	99.29
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.29
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	99.29
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.28
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.26
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.25
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.24
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.23
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.23
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.22
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.2
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.2
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	99.18
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.17
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.17
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.14
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.13
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.12
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.11
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.1
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.07
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.06
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.05
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	99.03
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.03
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.01
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.0
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	99.0
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	98.99
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.99
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.99
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.99
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.98
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.98
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.97
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	98.96
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	98.93
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.89
3ow8_A	321	WD repeat-containing protein 61; structural genomi	98.89
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	98.86
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	98.85
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.84
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	98.84
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.84
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.82
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.82
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	98.82
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.81
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.79
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	98.78
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	98.77
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.75
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.74
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.74
3v9f_A	781	Two-component system sensor histidine kinase/RESP	98.74
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.73
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.73
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	98.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.73
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.72
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	98.71
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.71
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.71
4a2l_A	795	BT_4663, two-component system sensor histidine kin	98.7
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	98.7
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	98.7
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.7
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.68
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	98.67
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.66
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	98.66
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.65
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	98.64
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.63
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	98.63
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	98.63
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.62
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.62
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.62
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	98.62
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	98.61
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.61
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	98.61
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	98.61
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.6
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.6
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.59
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	98.59
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.58
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.56
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	98.55
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.54
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.54
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.54
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.53
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.53
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.53
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.53
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	98.52
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	98.52
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.52
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	98.51
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.51
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	98.5
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	98.49
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.48
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.46
1k32_A	1045	Tricorn protease; protein degradation, substrate g	98.46
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.44
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.44
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	98.44
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	98.44
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	98.44
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	98.43
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.43
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	98.43
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	98.42
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	98.41
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	98.39
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.38
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.38
3ott_A	758	Two-component system sensor histidine kinase; beta	98.38
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	98.37
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	98.37
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	98.37
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.36
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	98.35
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.35
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	98.35
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	98.34
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.34
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.33
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.33
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.32
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	98.32
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	98.3
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	98.29
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	98.28
3jrp_A	379	Fusion protein of protein transport protein SEC13	98.28
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	98.28
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	98.28
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	98.27
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.27
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	98.26
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	98.26
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	98.25
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.23
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	98.23
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.23
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	98.22
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	98.22
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.2
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	98.19
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	98.19
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.19
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.18
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	98.17
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	98.16
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	98.16
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	98.15
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	98.14
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	98.13
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	98.13
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.1
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	98.1
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	98.07
2pm7_B	297	Protein transport protein SEC13, protein transport	98.07
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	98.04
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	98.04
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	98.03
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	98.03
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	98.01
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	98.0
3jro_A	753	Fusion protein of protein transport protein SEC13	97.99
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.98
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	97.98
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	97.95
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	97.95
3ott_A	758	Two-component system sensor histidine kinase; beta	97.95
2pm7_B	297	Protein transport protein SEC13, protein transport	97.94
3jro_A	753	Fusion protein of protein transport protein SEC13	97.94
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	97.93
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.91
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	97.91
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.91
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	97.88
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	97.87
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	97.82
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.76
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.68
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.67
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	97.65
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.64
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.63
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.59
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	97.59
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.57
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	97.57
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	97.52
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	97.49
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	97.47
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	97.45
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	97.4
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	97.35
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.31
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.28
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	97.18
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	97.16
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.15
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	97.14
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	97.11
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	97.08
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	97.07
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	97.05
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	96.92
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.86
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	96.73
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	96.65
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.64
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	96.62
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.6
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	96.5
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	96.39
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	96.31
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	96.29
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	96.11
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.97
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	95.88
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.47
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	95.3
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	95.13
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	95.04
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	94.88
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	94.52
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	94.5
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	94.35
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	94.09
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	93.97
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	93.03
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	92.91
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	92.52
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	91.93
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	90.85
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	90.33
1sqj_A	789	OXG-RCBH, oligoxyloglucan reducing-END-specific ce	89.39
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	88.82
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	87.36
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	84.96
2cn3_A	737	Xyloglucanase, beta-1,4-xyloglucan hydrolase; glyc	84.88

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.91  E-value=1.1e-22  Score=152.60  Aligned_cols=166  Identities=19%  Similarity=0.271  Sum_probs=130.6

Q ss_pred             CceecCCccCCcceEEEcCCCC-EEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEc
Q 030700            1 MIKLGEGIVNHPEDVSVDGNGV-LYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS   77 (173)
Q Consensus         1 ~~~~~~~~~~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~   77 (173)
                      +|++..+ +..+|+++|+++|. ||+++ .+++|++++++|+...+......++ +++++++|++ |+|+.. .+|.+++
T Consensus        37 ~~~l~~~-~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g~~~~~~~~~~~~~-gl~~d~dG~l-~v~~~~~~~v~~~~  113 (305)
T 3dr2_A           37 LLTLYDQ-ATWSEGPAWWEAQRTLVWSDLVGRRVLGWREDGTVDVLLDATAFTN-GNAVDAQQRL-VHCEHGRRAITRSD  113 (305)
T ss_dssp             CEEEECC-CSSEEEEEEEGGGTEEEEEETTTTEEEEEETTSCEEEEEESCSCEE-EEEECTTSCE-EEEETTTTEEEEEC
T ss_pred             eEEEecC-CcCccCCeEeCCCCEEEEEECCCCEEEEEeCCCCEEEEeCCCCccc-eeeECCCCCE-EEEECCCCEEEEEC
Confidence            4678888 68899999999886 88777 7789999999888777766677899 9999999998 999866 5788888


Q ss_pred             cCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccce--eeecccCCCceEEEEcCCCCeeEEeeccccCc
Q 030700           78 EEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA  154 (173)
Q Consensus        78 ~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~--~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p  154 (173)
                      .+| .+.+.....+.+++.|++++++++|++|++|..  ++.....  .........+.|+++|++++++..+. .+..|
T Consensus       114 ~~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~--~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p  190 (305)
T 3dr2_A          114 ADGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPP--FGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHP  190 (305)
T ss_dssp             TTSCEEEEECEETTEECSCCCCEEECTTSCEEEECCS--GGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSE
T ss_pred             CCCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcC--CCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCC
Confidence            878 777766666677789999999999999999753  1111000  00011123478999999888877777 88899


Q ss_pred             ceEEEccCCCEEEEEecC
Q 030700          155 NGVALSEDERFLVVCESW  172 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~~  172 (173)
                      +|++|+||++.|||+++.
T Consensus       191 ~gl~~spdg~~lyv~~~~  208 (305)
T 3dr2_A          191 NGLAFSPDEQTLYVSQTP  208 (305)
T ss_dssp             EEEEECTTSSEEEEEECC
T ss_pred             cceEEcCCCCEEEEEecC
Confidence            999999999999999874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.91  E-value=6.1e-23  Score=154.96  Aligned_cols=166  Identities=25%  Similarity=0.397  Sum_probs=127.8

Q ss_pred             cCCccCCcceEEEcCCCC-EEEEcCCCeEEEEcCCC-cEEEecc--------------------ccCccccceEEcc-CC
Q 030700            5 GEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHPNG-TWEDWHQ--------------------VGSQSLLGLTTTK-EN   61 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g-~~~~~~~--------------------~~~~p~~gl~~~~-~g   61 (173)
                      .++.+..|++++++++|+ +|++..+++|+++++++ ++..+..                    ....|. ||++++ +|
T Consensus        14 ~~g~~~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~-gi~~~~~~g   92 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTY-DISYNLQNN   92 (322)
T ss_dssp             EECSSSCCCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEE-EEEEETTTT
T ss_pred             cCCccCCceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCc-eEEEcCCCC
Confidence            345688999999999998 77766889999999765 4554421                    124689 999997 78


Q ss_pred             cEEEEEeCCCeEEEEccC-C-cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030700           62 NVIIVCDSQQGLLKVSEE-G-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (173)
Q Consensus        62 ~l~~v~~~~~~i~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  138 (173)
                      ++ ||++..+++++++.+ + .+.+.....+.++..|+++++++ +|++||++....+....+...+++....++|+++|
T Consensus        93 ~l-~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           93 QL-YIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             EE-EEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             cE-EEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            88 999988889999975 4 66666555556678899999999 99999998654333322222223334568999999


Q ss_pred             CCCCeeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          139 PSTNQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       139 ~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +++++++.+...+..|+||++++||++|||+++.
T Consensus       172 ~~~~~~~~~~~~~~~p~gia~~~dg~~lyv~d~~  205 (322)
T 2fp8_A          172 PSTKETTLLLKELHVPGGAEVSADSSFVLVAEFL  205 (322)
T ss_dssp             TTTTEEEEEEEEESCCCEEEECTTSSEEEEEEGG
T ss_pred             CCCCEEEEeccCCccCcceEECCCCCEEEEEeCC
Confidence            9888888777788999999999999999999874

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.86  E-value=1.2e-20  Score=144.31  Aligned_cols=163  Identities=22%  Similarity=0.363  Sum_probs=120.5

Q ss_pred             CCccCCcceEEEcCCCCEEEEc-------------CCCeEEEEcCC---CcEEEeccc-------cCccccceEEcc--C
Q 030700            6 EGIVNHPEDVSVDGNGVLYTAT-------------GDGWIKRMHPN---GTWEDWHQV-------GSQSLLGLTTTK--E   60 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~-------------~~~~i~~~~~~---g~~~~~~~~-------~~~p~~gl~~~~--~   60 (173)
                      ++...+||+++++++|.+|++.             ..|+|+++|++   ++..++...       ...|+ ||.+.+  +
T Consensus        46 ~~~~~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~Ph-Gi~~~~d~d  124 (355)
T 3sre_A           46 KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFIDDD  124 (355)
T ss_dssp             TTCCSCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEE-EEEEEECTT
T ss_pred             CCCCCCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeee-eeEEEECCC
Confidence            4545789999999999999885             57899999965   344443222       24899 999966  4


Q ss_pred             Cc-EEEEEeCCC-----eEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccc-eeeecccCCCc
Q 030700           61 NN-VIIVCDSQQ-----GLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY-YLDLVSGEPHG  132 (173)
Q Consensus        61 g~-l~~v~~~~~-----~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~-~~~~~~~~~~~  132 (173)
                      |+ .|||++...     .+++++.++ ...+...+.++++++||+++++++|++|+++... +....+ ..+..+..+.+
T Consensus       125 g~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~-ftd~~~~~~e~~~~~~~g  203 (355)
T 3sre_A          125 NTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHY-FIDPYLKSWEMHLGLAWS  203 (355)
T ss_dssp             CCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCS-CSSHHHHHHHHHTTCCCE
T ss_pred             CcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcE-eCCcccccchhhccCCcc
Confidence            53 339998663     377777766 6666777788899999999999999999997531 111000 01111234668


Q ss_pred             eEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +||++++.  ++++++.++..||||+||||+++|||+|+.
T Consensus       204 ~vyr~d~~--~~~~~~~~l~~pNGia~spDg~~lYvadt~  241 (355)
T 3sre_A          204 FVTYYSPN--DVRVVAEGFDFANGINISPDGKYVYIAELL  241 (355)
T ss_dssp             EEEEECTT--CCEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             EEEEEECC--eEEEeecCCcccCcceECCCCCEEEEEeCC
Confidence            99999994  677888899999999999999999999975

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.85  E-value=9.8e-20  Score=135.43  Aligned_cols=164  Identities=19%  Similarity=0.223  Sum_probs=122.7

Q ss_pred             ceecCCccCCcceEEEcCCCC-EEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc
Q 030700            2 IKLGEGIVNHPEDVSVDGNGV-LYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE   78 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~   78 (173)
                      +++..+ +..|++++|+|+|. ||+++ .+++|+++++++....+......|. +++++++|++ |++... .++.+++.
T Consensus        21 ~~l~~~-~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-~l~~~~dg~l-~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           21 RRLADG-FTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQLSPEMHPSHHQN-GHCLNKQGHL-IACSHGLRRLERQRE   97 (296)
T ss_dssp             EEEECC-CSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSCEEEEESSCSSEE-EEEECTTCCE-EEEETTTTEEEEECS
T ss_pred             EEEecC-CccccCCeEeCCCCEEEEEeCCCCEEEEEECCCCeEEEECCCCCcc-eeeECCCCcE-EEEecCCCeEEEEcC
Confidence            556666 78899999999987 77766 7789999998766555555567789 9999999998 888865 67888986


Q ss_pred             -CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccce--eeecccCCCceEEEEcCCCCeeEEeeccccCc
Q 030700           79 -EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYY--LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA  154 (173)
Q Consensus        79 -~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~--~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p  154 (173)
                       +| .+.+.....+.+...|++++++++|++|+++...  +.....  .........+.|++++++ ++...+...+..|
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~--g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~  174 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTY--GIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKP  174 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSH--HHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCcc--ccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCC
Confidence             77 6666554455556789999999999999987521  000000  000011234699999998 7777777888999


Q ss_pred             ceEEEccCCCEEEEEecC
Q 030700          155 NGVALSEDERFLVVCESW  172 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~~  172 (173)
                      ++++|+||++.| ++++.
T Consensus       175 ~gi~~s~dg~~l-v~~~~  191 (296)
T 3e5z_A          175 NGLAFLPSGNLL-VSDTG  191 (296)
T ss_dssp             EEEEECTTSCEE-EEETT
T ss_pred             ccEEECCCCCEE-EEeCC
Confidence            999999999988 87763

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.85  E-value=6.4e-20  Score=137.00  Aligned_cols=161  Identities=12%  Similarity=0.055  Sum_probs=120.8

Q ss_pred             ceecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-
Q 030700            2 IKLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      +.+.+..+..+||++|++ ++.||+++ .+++|+++++++...........+. +++++++|++ |++. ..++++++. 
T Consensus         5 ~~~~~~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~-~i~~~~dG~l-~v~~-~~~l~~~d~~   81 (297)
T 3g4e_A            5 ECVLPENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRVTMDAPVS-SVALRQSGGY-VATI-GTKFCALNWK   81 (297)
T ss_dssp             EEEECCCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECSSCEE-EEEEBTTSSE-EEEE-TTEEEEEETT
T ss_pred             EEEeccCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEEeCCCceE-EEEECCCCCE-EEEE-CCeEEEEECC
Confidence            344445578899999999 67899888 6789999997654333334456788 9999999997 8886 568999996 


Q ss_pred             CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceE
Q 030700           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (173)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi  157 (173)
                      ++ .+.+.....+.+...+++++++++|++|+++......      ........++|++++++ ++...+...+..||||
T Consensus        82 ~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~------~~~~~~~~~~l~~~d~~-g~~~~~~~~~~~pngi  154 (297)
T 3g4e_A           82 EQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETA------PAVLERHQGALYSLFPD-HHVKKYFDQVDISNGL  154 (297)
T ss_dssp             TTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSB------TTBCCTTCEEEEEECTT-SCEEEEEEEESBEEEE
T ss_pred             CCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccc------cccccCCCcEEEEEECC-CCEEEEeeccccccce
Confidence            56 6666655445556789999999999999986431100      00011245799999997 6666677778899999


Q ss_pred             EEccCCCEEEEEecC
Q 030700          158 ALSEDERFLVVCESW  172 (173)
Q Consensus       158 ~~~~dg~~lyv~~~~  172 (173)
                      +|+||++.||++++.
T Consensus       155 ~~spdg~~lyv~~~~  169 (297)
T 3g4e_A          155 DWSLDHKIFYYIDSL  169 (297)
T ss_dssp             EECTTSCEEEEEEGG
T ss_pred             EEcCCCCEEEEecCC
Confidence            999999999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.82  E-value=4.5e-19  Score=135.95  Aligned_cols=164  Identities=18%  Similarity=0.237  Sum_probs=117.4

Q ss_pred             CceecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEec------cccCccccceEEccC----CcEEEEEeCC
Q 030700            1 MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWH------QVGSQSLLGLTTTKE----NNVIIVCDSQ   70 (173)
Q Consensus         1 ~~~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~------~~~~~p~~gl~~~~~----g~l~~v~~~~   70 (173)
                      ++.++.+ +..|++++++|+|+|||++..++|++++.+|+ ..+.      .....|. ||+++++    +++ |++...
T Consensus        21 ~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~~d~~G~-~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~l-yv~~~~   96 (354)
T 3a9g_A           21 ISEVASD-LEVPWSIAPLGGGRYLVTERPGRLVLISPSGK-KLVASFDVANVGEAGLL-GLALHPEFPKKSWV-YLYASY   96 (354)
T ss_dssp             EEEEECS-CSCEEEEEEEETTEEEEEETTTEEEEECSSCE-EEEEECCCCCSTTCSEE-EEEECTTTTTSCEE-EEEEEE
T ss_pred             EEEEeCC-CCCCeEEEEcCCCeEEEEeCCCEEEEEeCCCc-eEeeccceeecCCCcee-eEEeCCCCCcCCEE-EEEEec
Confidence            3567777 89999999999999999998899999988887 4332      1235688 9999997    566 998763


Q ss_pred             --------CeEEEEccCC-------cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEE
Q 030700           71 --------QGLLKVSEEG-------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (173)
Q Consensus        71 --------~~i~~~~~~g-------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~  135 (173)
                              ..|++++.++       .+.+.........+.+++|+++|||.||++...... . ....  -.....++|+
T Consensus        97 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~-~-~~~~--d~~~~~G~I~  172 (354)
T 3a9g_A           97 FAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAAD-P-RLAQ--DLSSLAGKIL  172 (354)
T ss_dssp             ECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTC-G-GGGT--CTTCCSSEEE
T ss_pred             cCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCC-C-cccc--CCCCCCeEEE
Confidence                    5688887432       222333233333467899999999999999754211 0 0000  0123457999


Q ss_pred             EEcCCCC--------eeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          136 KYDPSTN--------QTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       136 ~~d~~~~--------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      |+++++.        ..+.++.++++|+||+|+|+...||++|.+
T Consensus       173 ri~~dG~~p~~npf~~~~i~a~G~rnp~Gla~d~~~g~l~v~d~g  217 (354)
T 3a9g_A          173 RVDEEGRPPADNPFPNSPIWSYGHRNPQGIDWHRASGVMVATEHG  217 (354)
T ss_dssp             EECTTSCCCTTSSSTTCCEEEECCSCCCEEEECTTTCCEEEEECC
T ss_pred             EEcCCCCCCCCCCCCCCcEEEEccCCcceEEEeCCCCCEEEEecC
Confidence            9999854        356788889999999999954459999875

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.81  E-value=9.5e-19  Score=134.04  Aligned_cols=165  Identities=18%  Similarity=0.210  Sum_probs=117.2

Q ss_pred             CceecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEec------cccCccccceEEccC---CcEEEEEeCC-
Q 030700            1 MIKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWH------QVGSQSLLGLTTTKE---NNVIIVCDSQ-   70 (173)
Q Consensus         1 ~~~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~------~~~~~p~~gl~~~~~---g~l~~v~~~~-   70 (173)
                      ++.++.+ +..|++++++|+|+|||++..++|++++ +|+...+.      .....|. ||+++++   ++.||+++.. 
T Consensus        23 ~~~va~~-l~~P~~ia~~pdG~l~V~e~~g~I~~i~-~g~~~~~~~~~v~~~g~~~p~-gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           23 VEEVVGG-LEVPWALAFLPDGGMLIAERPGRIRLFR-EGRLSTYAELSVYHRGESGLL-GLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             EEEEECC-CSCEEEEEECTTSCEEEEETTTEEEEEE-TTEEEEEEECCCCCSTTCSEE-EEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEECC-CCCceEEEEcCCCeEEEEeCCCeEEEEE-CCCccEeecceEeecCCCCce-eEEECCCCCCCCEEEEEEecC
Confidence            3567777 8999999999999999999879999998 77644332      1235799 9999998   4444999863 


Q ss_pred             -----CeEEEEccCC--c---EEEEeccC--CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030700           71 -----QGLLKVSEEG--V---TVLVSQFN--GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (173)
Q Consensus        71 -----~~i~~~~~~g--~---~~~~~~~~--~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  138 (173)
                           ..|.+++.++  .   +.+.....  ....+.+++|+++|||.||+++..... . .....  .....++|+|++
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~-~-~~~~d--~~~~~g~I~ri~  175 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYE-R-ELAQD--LASLGGKILRLT  175 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTC-G-GGGGC--TTCSSSEEEEEC
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCC-C-ccccC--CCCCceEEEEEc
Confidence                 5688887543  2   23333233  233467899999999999999754211 0 00000  123457999999


Q ss_pred             CCC-------------CeeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          139 PST-------------NQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       139 ~~~-------------~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +++             ...+.++.++.+|+||+|+|+...||++|.+
T Consensus       176 ~dG~~p~~npf~~~~~~~~~i~a~G~rnp~g~a~d~~~g~l~v~d~g  222 (352)
T 2ism_A          176 PEGEPAPGNPFLGRRGARPEVYSLGHRNPQGLAWHPKTGELFSSEHG  222 (352)
T ss_dssp             TTSSBCTTCTTTTCTTSCTTEEEECCSEECCCEECTTTCCEEEEEEC
T ss_pred             CCCCCCCCCcccCCCCCCccEEEEcCCCcccEEEECCCCCEEEEEcC
Confidence            985             2456777889999999999955569999875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.80  E-value=5.4e-18  Score=131.34  Aligned_cols=148  Identities=14%  Similarity=0.156  Sum_probs=111.5

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-EEEec-cccCccccceEEccCCcEEEEEeCC-CeEEEEc
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS   77 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~   77 (173)
                      .+..+ +..|.++++++ ++.||++| ..++|++++++|. ...+. .....|. ||++++.++.||+++.. +.|.+++
T Consensus       110 ~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~lY~~d~~~~~I~~~~  187 (386)
T 3v65_B          110 LLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVAN  187 (386)
T ss_dssp             EEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCC-CEEEETTTTEEEEEETTTTEEEECB
T ss_pred             EEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCcc-EEEEEeCCCeEEEEcCCCCeEEEEe
Confidence            34455 78899999997 77999999 7789999998875 33332 3345799 99999754444999976 4677777


Q ss_pred             cCC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccC
Q 030700           78 EEG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYF  153 (173)
Q Consensus        78 ~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~  153 (173)
                      .+|  .+.+..    ..+..|++|++|| +|.|||+|..                ..++|+++++++...+.+. .++..
T Consensus       188 ~dg~~~~~l~~----~~l~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~  247 (386)
T 3v65_B          188 LDGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFW  247 (386)
T ss_dssp             TTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSC
T ss_pred             CCCCceEEeec----CCCCCCcEEEEEcCCCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCC
Confidence            777  344432    2246899999998 5679999854                1268999999865544444 56889


Q ss_pred             cceEEEccCCCEEEEEecC
Q 030700          154 ANGVALSEDERFLVVCESW  172 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~~~  172 (173)
                      |+||+|+|+++.|||+|+.
T Consensus       248 PnGlavd~~~~~lY~aD~~  266 (386)
T 3v65_B          248 PNGLTIDYAGRRMYWVDAK  266 (386)
T ss_dssp             EEEEEEEGGGTEEEEEETT
T ss_pred             eeeEEEeCCCCEEEEEECC
Confidence            9999999999999999974

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.80  E-value=7.7e-18  Score=128.85  Aligned_cols=147  Identities=14%  Similarity=0.164  Sum_probs=110.9

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcE-EEe-ccccCccccceEEccCCcEEEEEeCC-CeEEEEcc
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW-EDW-HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE   78 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~-~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~   78 (173)
                      +..+ +..|.++++++ ++.||++| ..++|++++++|.. ..+ ......|. ||++|+.++.||+++.. +.|.+++.
T Consensus        68 ~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~-glavd~~~g~ly~~d~~~~~I~~~~~  145 (349)
T 3v64_C           68 LLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPG-GLAVDWVHDKLYWTDSGTSRIEVANL  145 (349)
T ss_dssp             EECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             eecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCcc-EEEEecCCCeEEEEcCCCCeEEEEcC
Confidence            3444 68899999997 78999999 67899999987753 333 23346799 99999754444999976 46888888


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCc
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFA  154 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p  154 (173)
                      +|  .+.+..    ..+..|++|++|| +|.|||+|..                ..++|+++++++...+.+. .++..|
T Consensus       146 dG~~~~~l~~----~~l~~P~~iavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~~~~P  205 (349)
T 3v64_C          146 DGAHRKVLLW----QSLEKPRAIALHPMEGTIYWTDWG----------------NTPRIEASSMDGSGRRIIADTHLFWP  205 (349)
T ss_dssp             TSCSCEEEEC----TTCSCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEESCCSSCSCE
T ss_pred             CCCceEEEEe----CCCCCcceEEEecCcCeEEEeccC----------------CCCEEEEEeCCCCCcEEEEECCCCCc
Confidence            87  344432    2246899999998 5789999854                1268999999865554444 468899


Q ss_pred             ceEEEccCCCEEEEEecC
Q 030700          155 NGVALSEDERFLVVCESW  172 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~~  172 (173)
                      +||+++|+++.|||+|+.
T Consensus       206 nGla~d~~~~~lY~aD~~  223 (349)
T 3v64_C          206 NGLTIDYAGRRMYWVDAK  223 (349)
T ss_dssp             EEEEEETTTTEEEEEETT
T ss_pred             ceEEEeCCCCEEEEEECC
Confidence            999999999999999974

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.79  E-value=7.9e-18  Score=125.42  Aligned_cols=164  Identities=25%  Similarity=0.374  Sum_probs=119.7

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEE-------c-CCCeEEEEcC-CCcEEEecc-----ccCccccceEEccC-CcEEEE
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTA-------T-GDGWIKRMHP-NGTWEDWHQ-----VGSQSLLGLTTTKE-NNVIIV   66 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~-------~-~~~~i~~~~~-~g~~~~~~~-----~~~~p~~gl~~~~~-g~l~~v   66 (173)
                      +++..+ +..|++++++++|.||++       + .++.|+++++ +|+...+..     ....|. +++++++ |++ |+
T Consensus        11 ~~~~~~-~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~-~i~~~~~~g~l-~v   87 (314)
T 1pjx_A           11 TKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQL-FV   87 (314)
T ss_dssp             EEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEE-EE
T ss_pred             hhhhcc-CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCc-eEEEecCCCcE-EE
Confidence            455555 889999999999999998       5 6788999994 677665533     335788 9999999 888 99


Q ss_pred             EeCCCeEEEEccCC-cEEE-EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           67 CDSQQGLLKVSEEG-VTVL-VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        67 ~~~~~~i~~~~~~g-~~~~-~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      +....++++++.+| ...+ .....+.+...|++++++++|++|+++.........+  ........+.|++++++ ++.
T Consensus        88 ~~~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~-g~~  164 (314)
T 1pjx_A           88 ADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADY--TRSMQEKFGSIYCFTTD-GQM  164 (314)
T ss_dssp             EETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCC--CBTTSSSCEEEEEECTT-SCE
T ss_pred             EECCCCEEEEeCCCCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccc--cccccCCCCeEEEECCC-CCE
Confidence            88777899998668 5544 3333334456799999999999999975421000000  00011234789999998 777


Q ss_pred             EEeeccccCcceEEEc----cCCCEEEEEec
Q 030700          145 SLVLDGLYFANGVALS----EDERFLVVCES  171 (173)
Q Consensus       145 ~~~~~~~~~p~gi~~~----~dg~~lyv~~~  171 (173)
                      ..+......|++++++    +|++.||++++
T Consensus       165 ~~~~~~~~~~~~i~~~~~~d~dg~~l~v~~~  195 (314)
T 1pjx_A          165 IQVDTAFQFPNGIAVRHMNDGRPYQLIVAET  195 (314)
T ss_dssp             EEEEEEESSEEEEEEEECTTSCEEEEEEEET
T ss_pred             EEeccCCCCcceEEEecccCCCCCEEEEEEC
Confidence            6666667889999999    99989999975

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.79  E-value=2.9e-17  Score=123.95  Aligned_cols=146  Identities=13%  Similarity=0.117  Sum_probs=107.5

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCC----c-EEEec-cccCccccceEEcc-CCcEEEEEeCC-CeE
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG----T-WEDWH-QVGSQSLLGLTTTK-ENNVIIVCDSQ-QGL   73 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g----~-~~~~~-~~~~~p~~gl~~~~-~g~l~~v~~~~-~~i   73 (173)
                      +... +..|+++++++ ++.||+++ .+++|++++.+|    . ...+. .....|. ||++|+ ++++ |+++.. +.|
T Consensus        25 ~~~~-~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavd~~~~~l-y~~d~~~~~I  101 (316)
T 1ijq_A           25 LIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNI-YWTDSVLGTV  101 (316)
T ss_dssp             EECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEE-EEEETTTTEE
T ss_pred             hhcC-CCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcC-EEEEeecCCeE-EEEECCCCEE
Confidence            3344 68899999998 67999999 678999999876    2 23332 2346899 999996 4555 999876 468


Q ss_pred             EEEccCC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-c
Q 030700           74 LKVSEEG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-D  149 (173)
Q Consensus        74 ~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~  149 (173)
                      .+++.+|  .+.+...    .+..|+++++|| +|.+||++..                ..++|+++++++...+.+. .
T Consensus       102 ~~~~~~g~~~~~~~~~----~~~~P~~iavdp~~g~ly~~d~~----------------~~~~I~~~~~dG~~~~~~~~~  161 (316)
T 1ijq_A          102 SVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTE  161 (316)
T ss_dssp             EEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeCCCCceEEEEEC----CCCCcceEEeCCCCCEEEEEccC----------------CCCeEEEEcCCCCCeEEEEEC
Confidence            8888777  4444431    236899999998 6789999753                1268999999855444443 4


Q ss_pred             cccCcceEEEccCCCEEEEEecC
Q 030700          150 GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .+..|+||+++++++.|||+|+.
T Consensus       162 ~~~~P~gla~d~~~~~lY~~D~~  184 (316)
T 1ijq_A          162 NIQWPNGITLDLLSGRLYWVDSK  184 (316)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCceEEEEeccCCEEEEEECC
Confidence            68899999999999999999974

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.78  E-value=2.8e-17  Score=127.85  Aligned_cols=147  Identities=13%  Similarity=0.119  Sum_probs=109.4

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-----EEEe-ccccCccccceEEcc-CCcEEEEEeCC-Ce
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-----WEDW-HQVGSQSLLGLTTTK-ENNVIIVCDSQ-QG   72 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-----~~~~-~~~~~~p~~gl~~~~-~g~l~~v~~~~-~~   72 (173)
                      ++..+ +..|.+|++++ ++.||++| ..++|++++.+|.     ...+ ......|. ||++|+ .+++ |+++.. +.
T Consensus       106 ~~~~~-~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~-glavD~~~~~l-Y~~d~~~~~  182 (400)
T 3p5b_L          106 SLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNI-YWTDSVLGT  182 (400)
T ss_dssp             EEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE-EEEEETTTTEE-EEEETTTTE
T ss_pred             Eeccc-cCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc-cEEEEecCCce-EEEECCCCe
Confidence            34444 78999999998 67999999 6789999998762     2333 33456899 999998 5555 999976 46


Q ss_pred             EEEEccCC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-
Q 030700           73 LLKVSEEG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-  148 (173)
Q Consensus        73 i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-  148 (173)
                      |.+++.+|  ...+...    .+..|++|++|| +|.|||+|..                ..++|+++++++...+.+. 
T Consensus       183 I~~~~~~g~~~~~l~~~----~~~~P~~iavdp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~~~~  242 (400)
T 3p5b_L          183 VSVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVT  242 (400)
T ss_dssp             EEEECTTTCSEEEEEEC----SSCCEEEEEEETTTTEEEEEECS----------------SSCCEEEEETTSCSCEEEEC
T ss_pred             EEEEeCCCCceEEEEeC----CCCCcceEEEecccCeEEEEeCC----------------CCCEEEEEeCCCCccEEEEE
Confidence            77778787  4444331    246799999998 5789999853                1258999999865544443 


Q ss_pred             ccccCcceEEEccCCCEEEEEecC
Q 030700          149 DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       149 ~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .++..|+||+++++++.|||+|+.
T Consensus       243 ~~l~~P~glavd~~~~~lY~aD~~  266 (400)
T 3p5b_L          243 ENIQWPNGITLDLLSGRLYWVDSK  266 (400)
T ss_dssp             SSCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCceEEEEEEeCCCEEEEEECC
Confidence            468999999999999999999974

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.78  E-value=1.4e-17  Score=126.03  Aligned_cols=142  Identities=18%  Similarity=0.183  Sum_probs=108.3

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcE---EEeccccCccccceEEcc-CCcEEEEEeCC-CeEEEEccCC-
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW---EDWHQVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSEEG-   80 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~---~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~-~~i~~~~~~g-   80 (173)
                      +..|.+|+|++ ++.||++| ..++|++++++|..   ..+......|. |+++++ ++++ |+++.. ..|.+++.+| 
T Consensus        34 ~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~-glavd~~~g~l-y~~d~~~~~I~~~~~dG~  111 (318)
T 3sov_A           34 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKL-YWTDSETNRIEVSNLDGS  111 (318)
T ss_dssp             EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCC-EEEEETTTTEE-EEEETTTTEEEEEETTSC
T ss_pred             CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCcc-EEEEEcCCCeE-EEEECCCCEEEEEECCCC
Confidence            56788999998 68999999 67899999987752   22333456899 999997 4555 999976 4687888887 


Q ss_pred             -cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV  157 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi  157 (173)
                       .+.+..    ..+..|++|+++| .|.||+++..                ..++|+++++++...+.+. .++..|+||
T Consensus       112 ~~~~l~~----~~~~~P~giavdp~~g~ly~td~~----------------~~~~I~r~~~dG~~~~~~~~~~l~~Pngl  171 (318)
T 3sov_A          112 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL  171 (318)
T ss_dssp             SCEEEEC----SSCSSEEEEEEEGGGTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEE
T ss_pred             cEEEEEe----CCCCCccEEEEeCCCCEEEEEecC----------------CCCEEEEEEcCCCCeEEEEECCCCCccEE
Confidence             444432    2246899999998 5789999843                2368999999855444443 568999999


Q ss_pred             EEccCCCEEEEEecC
Q 030700          158 ALSEDERFLVVCESW  172 (173)
Q Consensus       158 ~~~~dg~~lyv~~~~  172 (173)
                      +++++++.|||+|+.
T Consensus       172 avd~~~~~lY~aD~~  186 (318)
T 3sov_A          172 TLDYEEQKLYWADAK  186 (318)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEeccCCEEEEEECC
Confidence            999999999999974

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.78  E-value=4.6e-17  Score=123.09  Aligned_cols=166  Identities=14%  Similarity=0.185  Sum_probs=115.5

Q ss_pred             ecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc---EEEec---------cccCccccceEEcc-CCcEEEEEeC
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT---WEDWH---------QVGSQSLLGLTTTK-ENNVIIVCDS   69 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~---~~~~~---------~~~~~p~~gl~~~~-~g~l~~v~~~   69 (173)
                      +..+.+..|.+++++++|+||+++ .+++|++++++|+   +..+.         .....|. +|++++ +|++ |+++.
T Consensus        85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~-~ia~~~~~g~l-yv~d~  162 (329)
T 3fvz_A           85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPT-DVAVEPSTGAV-FVSDG  162 (329)
T ss_dssp             ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEE-EEEECTTTCCE-EEEEC
T ss_pred             cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCc-EEEEeCCCCeE-EEEeC
Confidence            344557899999999999999999 6789999998886   22331         1233699 999999 8888 99995


Q ss_pred             --CCeEEEEccCC--cEEEEeccCC-----ccccCCccEEEcCC-CcEEEEeCcCC----cCcc-cce------------
Q 030700           70 --QQGLLKVSEEG--VTVLVSQFNG-----SQLRFANDVIEASD-GSLYFTVSSTK----FTPA-EYY------------  122 (173)
Q Consensus        70 --~~~i~~~~~~g--~~~~~~~~~~-----~~~~~~~~l~~~~d-G~~~v~~~~~~----~~~~-~~~------------  122 (173)
                        .+.|.+++.+|  ...+.....+     ..+..|++|+++++ |++||++...+    +... ...            
T Consensus       163 ~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~  242 (329)
T 3fvz_A          163 YCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRN  242 (329)
T ss_dssp             SSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred             CCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence              35688888888  3444322221     24567999999998 89999986532    1111 000            


Q ss_pred             ----------------eeecccCCCceEEEEcCCCCeeEEee----ccccCcceEEEccCCCEEEEEecC
Q 030700          123 ----------------LDLVSGEPHGVLLKYDPSTNQTSLVL----DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       123 ----------------~~~~~~~~~~~v~~~d~~~~~~~~~~----~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                                      ...+......+++.++..++++....    ..+..|.+|+++||| .|||++..
T Consensus       243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG-~lyvad~~  311 (329)
T 3fvz_A          243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDG-TVYIGDAH  311 (329)
T ss_dssp             EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTS-EEEEEESS
T ss_pred             cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCC-CEEEEECC
Confidence                            00111223347888887777655553    347889999999999 79999864

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.78  E-value=1.5e-17  Score=130.67  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=109.8

Q ss_pred             ccCCcceEEEcCC---CCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-----CeEEEEcc
Q 030700            8 IVNHPEDVSVDGN---GVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVSE   78 (173)
Q Consensus         8 ~~~~p~~l~~~~~---g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----~~i~~~~~   78 (173)
                      .+..|.+|+++|+   |.||+++..++|+++++ +|.+..+......|. +|+++++|++ |+++..     .+++.++.
T Consensus       137 ~~~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~~~~P~-giavd~dG~l-yVad~~~~~~~~gv~~~~~  214 (433)
T 4hw6_A          137 AFDNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTNIGQCA-DVNFTLNGDM-VVVDDQSSDTNTGIYLFTR  214 (433)
T ss_dssp             CCSCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCCCSCEE-EEEECTTCCE-EEEECCSCTTSEEEEEECG
T ss_pred             ccCCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecCCCCcc-EEEECCCCCE-EEEcCCCCcccceEEEEEC
Confidence            6889999999984   89999995589999997 677777766677899 9999999996 999863     25777775


Q ss_pred             CC-cE---EEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeec--c
Q 030700           79 EG-VT---VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLD--G  150 (173)
Q Consensus        79 ~g-~~---~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~--~  150 (173)
                      ++ ..   .+.      .+..|+++++++ +|+|||++..                 +++|++++++++.. ..+..  .
T Consensus       215 ~~~~~~~~~~~------~~~~P~giavd~~~G~lyv~d~~-----------------~~~V~~~d~~~g~~~~~~~~~~~  271 (433)
T 4hw6_A          215 ASGFTERLSLC------NARGAKTCAVHPQNGKIYYTRYH-----------------HAMISSYDPATGTLTEEEVMMDT  271 (433)
T ss_dssp             GGTTCCEEEEE------ECSSBCCCEECTTTCCEEECBTT-----------------CSEEEEECTTTCCEEEEEEECSC
T ss_pred             CCCeecccccc------ccCCCCEEEEeCCCCeEEEEECC-----------------CCEEEEEECCCCeEEEEEeccCC
Confidence            44 22   222      247899999999 8999999743                 36999999987765 33332  2


Q ss_pred             ccCcceEEEccCCCEEEEEecC
Q 030700          151 LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ...+.+|+|+|++++|||+++.
T Consensus       272 ~~~~~~ia~dpdG~~LYvad~~  293 (433)
T 4hw6_A          272 KGSNFHIVWHPTGDWAYIIYNG  293 (433)
T ss_dssp             CSSCEEEEECTTSSEEEEEETT
T ss_pred             CCCcccEEEeCCCCEEEEEeCC
Confidence            3456789999999999999974

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.77  E-value=4.2e-17  Score=133.36  Aligned_cols=144  Identities=16%  Similarity=0.123  Sum_probs=114.0

Q ss_pred             ccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-EEEecc-ccCccccceEEccCCcEEEEEeCC-CeEEEEccCC--
Q 030700            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--   80 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g--   80 (173)
                      .+..|.+|++|+ ++.||++| .+++|++++.+|. ...+.. ....|. ||++|+.++.||+++.. +.|.+++.+|  
T Consensus        35 ~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~-GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~  113 (628)
T 4a0p_A           35 GVKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPE-GMAVDWLGKNLYWADTGTNRIEVSKLDGQH  113 (628)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSTT
T ss_pred             CCCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc-eEEEEeCCCEEEEEECCCCEEEEEecCCCc
Confidence            367899999998 67999999 7789999998874 333333 346799 99999765444999987 4677788888  


Q ss_pred             cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                      .+.+..    ..+..|++|++|| +|.|||+|..                ..++|+++++++...+.+..++..|+||++
T Consensus       114 ~~~l~~----~~l~~P~~iavdp~~G~lY~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~P~Glal  173 (628)
T 4a0p_A          114 RQVLVW----KDLDSPRALALDPAEGFMYWTEWG----------------GKPKIDRAAMDGSERTTLVPNVGRANGLTI  173 (628)
T ss_dssp             CEEEEC----SSCCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSCSSEEEEEE
T ss_pred             EEEEEe----CCCCCcccEEEccCCCeEEEeCCC----------------CCCEEEEEeCCCCceEEEECCCCCcceEEE
Confidence            444432    2346899999998 6899999853                136999999997777777788999999999


Q ss_pred             ccCCCEEEEEecC
Q 030700          160 SEDERFLVVCESW  172 (173)
Q Consensus       160 ~~dg~~lyv~~~~  172 (173)
                      +++++.|||+|+.
T Consensus       174 D~~~~~LY~aD~~  186 (628)
T 4a0p_A          174 DYAKRRLYWTDLD  186 (628)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             ccccCEEEEEECC
Confidence            9999999999974

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.77  E-value=6.2e-17  Score=118.90  Aligned_cols=144  Identities=17%  Similarity=0.174  Sum_probs=107.5

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcE-EEec-cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC--c
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW-EDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--V   81 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~-~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g--~   81 (173)
                      ...|+++++++ ++.||+++ ..++|++++.+|.. ..+. .....|. +++++++++.+|+++.. +.|.+++.+|  .
T Consensus        35 ~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~-~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~  113 (267)
T 1npe_A           35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQR  113 (267)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSC
T ss_pred             CCcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCcc-EEEEEecCCeEEEEECCCCEEEEEEcCCCCE
Confidence            45689999998 57999999 67899999987753 3332 2346899 99999865445999976 4688888777  3


Q ss_pred             EEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVAL  159 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~  159 (173)
                      +.+...    .+..|++++++| +|++||++..               ...++|+++++++...+.+. ..+..|+||++
T Consensus       114 ~~~~~~----~~~~P~~i~vd~~~g~lyv~~~~---------------~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~  174 (267)
T 1npe_A          114 RVLFDT----GLVNPRGIVTDPVRGNLYWTDWN---------------RDNPKIETSHMDGTNRRILAQDNLGLPNGLTF  174 (267)
T ss_dssp             EEEECS----SCSSEEEEEEETTTTEEEEEECC---------------SSSCEEEEEETTSCCCEEEECTTCSCEEEEEE
T ss_pred             EEEEEC----CCCCccEEEEeeCCCEEEEEECC---------------CCCcEEEEEecCCCCcEEEEECCCCCCcEEEE
Confidence            444321    236899999999 5789999743               12368999998854444443 45788999999


Q ss_pred             ccCCCEEEEEecC
Q 030700          160 SEDERFLVVCESW  172 (173)
Q Consensus       160 ~~dg~~lyv~~~~  172 (173)
                      +++++.|||+++.
T Consensus       175 d~~~~~lyv~d~~  187 (267)
T 1npe_A          175 DAFSSQLCWVDAG  187 (267)
T ss_dssp             ETTTTEEEEEETT
T ss_pred             cCCCCEEEEEECC
Confidence            9999999999874

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.76  E-value=7.2e-17  Score=122.05  Aligned_cols=147  Identities=15%  Similarity=0.171  Sum_probs=107.6

Q ss_pred             ccCCcceEEEcCCCCEEEEcCCC-------------------------eEEEEcCC-CcEEEecc--ccCccccceEEcc
Q 030700            8 IVNHPEDVSVDGNGVLYTATGDG-------------------------WIKRMHPN-GTWEDWHQ--VGSQSLLGLTTTK   59 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~~~-------------------------~i~~~~~~-g~~~~~~~--~~~~p~~gl~~~~   59 (173)
                      .+..|.+|+++++|++|+++...                         .|+++|++ |++.....  ....|. ++++++
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~-gia~d~  100 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPH-GLSIDT  100 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEE-EEEECT
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCce-EEEECC
Confidence            57889999999999999998433                         69999974 77654322  235799 999999


Q ss_pred             CCcEEEEEeCC-CeEEEEccCC-c---EEEEecc----CCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccC
Q 030700           60 ENNVIIVCDSQ-QGLLKVSEEG-V---TVLVSQF----NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGE  129 (173)
Q Consensus        60 ~g~l~~v~~~~-~~i~~~~~~g-~---~~~~~~~----~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~  129 (173)
                      +|++ |+++.. +.|.+++.+| .   ..+....    ....+..|++|+++| +|++||++..                
T Consensus       101 ~g~l-~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~----------------  163 (329)
T 3fvz_A          101 DGNY-WVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGY----------------  163 (329)
T ss_dssp             TSCE-EEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECS----------------
T ss_pred             CCCE-EEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCC----------------
Confidence            9997 999876 4677888776 3   2222110    023356899999999 8999999841                


Q ss_pred             CCceEEEEcCCCCeeEEee----------ccccCcceEEEccCCCEEEEEecC
Q 030700          130 PHGVLLKYDPSTNQTSLVL----------DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       130 ~~~~v~~~d~~~~~~~~~~----------~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .+++|.++++++..+..+.          ..+..|++|+++|++..|||++..
T Consensus       164 ~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~  216 (329)
T 3fvz_A          164 CNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE  216 (329)
T ss_dssp             SCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT
T ss_pred             CCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC
Confidence            2368999998744444332          135669999999997789999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.76  E-value=4.3e-17  Score=127.95  Aligned_cols=141  Identities=15%  Similarity=0.135  Sum_probs=109.6

Q ss_pred             ccCCcceEEEcC--CCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCC-----eEEEEccC
Q 030700            8 IVNHPEDVSVDG--NGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-----GLLKVSEE   79 (173)
Q Consensus         8 ~~~~p~~l~~~~--~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-----~i~~~~~~   79 (173)
                      .+..|.+|+++|  +|+||+++..++|+++++++ .+..+......|. +|+++++|+.||+++...     .++.++.+
T Consensus       135 ~~~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~~~~P~-~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~  213 (430)
T 3tc9_A          135 GFGGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSGLSKVR-TICWTHEADSMIITNDQNNNDRPNNYILTRE  213 (430)
T ss_dssp             CCSCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECCCSCEE-EEEECTTSSEEEEEECCSCTTSEEEEEEEGG
T ss_pred             CCCCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecCCCCcc-eEEEeCCCCEEEEEeCCCCcccceEEEEeCC
Confidence            478999999997  48999999558899999876 4556656667899 999999999669999742     46666666


Q ss_pred             C-cE---EEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--ccc
Q 030700           80 G-VT---VLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLY  152 (173)
Q Consensus        80 g-~~---~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~  152 (173)
                      | ..   .+.      .+.+|++++++| +|.+||++..                 .++|++++++++....+..  ...
T Consensus       214 g~~~~~~~l~------~~~~p~giavdp~~g~lyv~d~~-----------------~~~V~~~~~~~~~~~~~~~~~~~~  270 (430)
T 3tc9_A          214 SGFKVITELT------KGQNCNGAETHPINGELYFNSWN-----------------AGQVFRYDFTTQETTPLFTIQDSG  270 (430)
T ss_dssp             GTSCSEEEEE------ECSSCCCEEECTTTCCEEEEETT-----------------TTEEEEEETTTTEEEEEEECSSSS
T ss_pred             Cceeeeeeec------cCCCceEEEEeCCCCEEEEEECC-----------------CCEEEEEECCCCcEEEEEEcCCCC
Confidence            6 32   222      246899999999 8999999753                 3699999998776533322  346


Q ss_pred             CcceEEEccCCCEEEEEecC
Q 030700          153 FANGVALSEDERFLVVCESW  172 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .|++|+|+|+|++|||++..
T Consensus       271 ~P~gia~~pdG~~lyv~d~~  290 (430)
T 3tc9_A          271 WEFHIQFHPSGNYAYIVVVN  290 (430)
T ss_dssp             CCEEEEECTTSSEEEEEETT
T ss_pred             cceeEEEcCCCCEEEEEECC
Confidence            79999999999999999864

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.76  E-value=8.9e-17  Score=120.52  Aligned_cols=139  Identities=19%  Similarity=0.253  Sum_probs=108.1

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-C--eEEEEc-cCC-cEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-Q--GLLKVS-EEG-VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~--~i~~~~-~~g-~~~   83 (173)
                      ..|++++++++|+||+++ .+++|++++++|+...+......|+ ||+++++|++ |+++.. +  .+++++ .+| .+.
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~~~~~~~~~~p~-gia~~~dG~l-~vad~~~~~~~v~~~d~~~g~~~~  109 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVET  109 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCE-EEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCceEEEEeCCCCce-eEEEcCCCcE-EEEeccCCcceEEEEcCCCCeEEE
Confidence            679999999999999999 7789999999888766656667899 9999999997 999854 2  478877 577 665


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-----------ecccc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-----------LDGLY  152 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-----------~~~~~  152 (173)
                      +.....   ...+++++..+++++|+++..                 .++||++|+.+++..+.           ...+.
T Consensus       110 ~~~~~~---~~~~~g~~~~~~~~~~v~d~~-----------------~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~  169 (306)
T 2p4o_A          110 LLTLPD---AIFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  169 (306)
T ss_dssp             EEECTT---CSCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             EEeCCC---ccccCcccccCCCcEEEEECC-----------------CCeEEEEeCCCCcEeEEEECCccccccccCCCC
Confidence            554322   246788888888889998742                 36999999976533222           13467


Q ss_pred             CcceEEEccCCCEEEEEecC
Q 030700          153 FANGVALSEDERFLVVCESW  172 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .||||  ++|+++|||+++.
T Consensus       170 ~pngi--s~dg~~lyv~d~~  187 (306)
T 2p4o_A          170 AANGL--KRFGNFLYVSNTE  187 (306)
T ss_dssp             SEEEE--EEETTEEEEEETT
T ss_pred             cCCCc--CcCCCEEEEEeCC
Confidence            89998  8999999999975

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.76  E-value=1.2e-16  Score=121.67  Aligned_cols=163  Identities=16%  Similarity=0.194  Sum_probs=114.7

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcC-CCeEEEEcCC-CcEEEec-------cccCccccceEEccC----CcEEEEEe
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHPN-GTWEDWH-------QVGSQSLLGLTTTKE----NNVIIVCD   68 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~~-g~~~~~~-------~~~~~p~~gl~~~~~----g~l~~v~~   68 (173)
                      +.++++ +..|.++++.|+|.|||+.. .|+|++++.+ |+...+.       .....+. ||+++|+    +.+ |++.
T Consensus        25 ~~va~g-L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~Gll-Gia~~Pdf~~~g~l-Yv~y  101 (347)
T 3das_A           25 RTVATG-LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLL-GIALSPDYASDHMV-YAYF  101 (347)
T ss_dssp             EEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEE-EEEECTTHHHHCEE-EEEE
T ss_pred             EEeecC-CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCce-eeEeccccccCCEE-EEEE
Confidence            567777 89999999999999999996 8999999864 5543321       2234678 9999984    666 9874


Q ss_pred             C---CCeEEEEcc-C-----C----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEE
Q 030700           69 S---QQGLLKVSE-E-----G----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (173)
Q Consensus        69 ~---~~~i~~~~~-~-----g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~  135 (173)
                      .   .++|+++.. .     .    .+.+.........+....|+++|||.|||+.......  .....  .....|+|+
T Consensus       102 t~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~--~~~qd--~~~~~G~Il  177 (347)
T 3das_A          102 TSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDT--GLSQD--RKSLGGKIL  177 (347)
T ss_dssp             ECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCG--GGTTC--TTCSTTCEE
T ss_pred             ecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCC--ccccC--CCCCCCEEE
Confidence            2   346888763 2     1    3444443333334677889999999999996432110  00000  113458999


Q ss_pred             EEcCCCC--------eeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          136 KYDPSTN--------QTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       136 ~~d~~~~--------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      |+++++.        ..+.++.++++|.||+|+|+|+ ||++|.+
T Consensus       178 Ri~~dG~ip~~nPf~~~~i~a~G~RNp~Gla~dp~G~-L~~~d~g  221 (347)
T 3das_A          178 RMTPDGEPAPGNPFPGSPVYSYGHRNVQGLAWDDKQR-LFASEFG  221 (347)
T ss_dssp             EECTTSSBCTTCSSTTCCEEEBCCSBCCEEEECTTCC-EEEEECC
T ss_pred             EEeCCCCccCCCCCCCCeEEeeCCCCcceEEECCCCC-EEEEecC
Confidence            9999854        3467888999999999999875 9999875

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.75  E-value=6.6e-17  Score=120.61  Aligned_cols=143  Identities=15%  Similarity=0.224  Sum_probs=107.9

Q ss_pred             cCCcceEEEcCCCCEEEEc------------CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT------------GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLK   75 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~------------~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~   75 (173)
                      ...|.+++++++|++|+++            ..+.|++++++|+...+......|+ |++++++++.+|+++.. +.|++
T Consensus        97 ~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pn-gi~~spdg~~lyv~~~~~~~i~~  175 (297)
T 3g4e_A           97 NNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISN-GLDWSLDHKIFYYIDSLSYSVDA  175 (297)
T ss_dssp             SEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEE-EEEECTTSCEEEEEEGGGTEEEE
T ss_pred             CCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecccccc-ceEEcCCCCEEEEecCCCCcEEE
Confidence            3568899999999999986            2357999998888776666667899 99999999877999875 45776


Q ss_pred             Ec---cCC-cE---EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           76 VS---EEG-VT---VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        76 ~~---~~g-~~---~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      ++   .+| ..   .+... . .....|++|++|++|++|+++..                 .++|++||++++++....
T Consensus       176 ~~~d~~~G~~~~~~~~~~~-~-~~~~~p~g~~~d~~G~lwva~~~-----------------~~~v~~~d~~tG~~~~~i  236 (297)
T 3g4e_A          176 FDYDLQTGQISNRRSVYKL-E-KEEQIPDGMCIDAEGKLWVACYN-----------------GGRVIRLDPVTGKRLQTV  236 (297)
T ss_dssp             EEECTTTCCEEEEEEEEEC-C-GGGCEEEEEEEBTTSCEEEEEET-----------------TTEEEEECTTTCCEEEEE
T ss_pred             EeccCCCCcccCcEEEEEC-C-CCCCCCCeeEECCCCCEEEEEcC-----------------CCEEEEEcCCCceEEEEE
Confidence            65   355 32   22221 1 11247899999999999999632                 368999999877654443


Q ss_pred             -ccccCcceEEEc-cCCCEEEEEec
Q 030700          149 -DGLYFANGVALS-EDERFLVVCES  171 (173)
Q Consensus       149 -~~~~~p~gi~~~-~dg~~lyv~~~  171 (173)
                       .....|..++|+ ||+++|||+..
T Consensus       237 ~~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          237 KLPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             ECSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             ECCCCCceEEEEeCCCCCEEEEEcC
Confidence             334678999998 89999999875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.75  E-value=1.3e-16  Score=130.30  Aligned_cols=144  Identities=17%  Similarity=0.175  Sum_probs=108.6

Q ss_pred             ccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcE--EE-eccccCccccceEEccCCcEEEEEeCCC-eEEEEccCC-
Q 030700            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTW--ED-WHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-   80 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~--~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-   80 (173)
                      .+..|.+|++++ ++.||++| .+++|++++.+|..  .. +......|. ||++|+.++.||+++... .|.+++.+| 
T Consensus        38 ~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~-GlAvD~~~~~ly~~d~~~~~I~v~~~dG~  116 (619)
T 3s94_A           38 GLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPD-GLACDWLGEKLYWTDSETNRIEVSNLDGS  116 (619)
T ss_dssp             CCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEE-EEEEETTTTEEEEEETTTTEEEEEETTSC
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcC-eEEEEecCCEEEEEeCCCCEEEEEECCCC
Confidence            378899999998 77999999 67899999988752  23 333346899 999998555459999774 577777888 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGV  157 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi  157 (173)
                       .+.+..    ..+..|++|++||. |.|||||..                ..++|++.++++...+.+. ..+..|+||
T Consensus       117 ~~~~l~~----~~l~~P~~Iavdp~~g~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~~~~P~Gl  176 (619)
T 3s94_A          117 LRKVLFW----QELDQPRAIALDPSSGFMYWTDWG----------------EVPKIERAGMDGSSRFIIINSEIYWPNGL  176 (619)
T ss_dssp             SCEEEEC----SSCSCCCCEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSSEEEE
T ss_pred             CEEEEEe----CCCCCCceEEEecCCCeEEEeccC----------------CCCEEEEEECCCCceEEEEeCCCCCCcEE
Confidence             444442    23478999999995 789999854                1258999999865554444 468999999


Q ss_pred             EEccCCCEEEEEecC
Q 030700          158 ALSEDERFLVVCESW  172 (173)
Q Consensus       158 ~~~~dg~~lyv~~~~  172 (173)
                      +++++++.|||+|+.
T Consensus       177 ald~~~~~LY~aD~~  191 (619)
T 3s94_A          177 TLDYEEQKLYWADAK  191 (619)
T ss_dssp             EEETTTTEEEEEETT
T ss_pred             EEEccCCEEEEEeCC
Confidence            999998999999964

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.75  E-value=2.6e-16  Score=118.38  Aligned_cols=148  Identities=24%  Similarity=0.382  Sum_probs=111.2

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEec-cccCccccceEEccCCcEEEEEeCCC-----eEEEEccCC
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-----GLLKVSEEG   80 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~-----~i~~~~~~g   80 (173)
                      ...|++++++++|.||+++ .++.|++++++ ++...+. .....+. +++++++|++ |++....     ++++++.++
T Consensus        44 ~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~i~~~~dg~l-~v~~~~~~~~~~~i~~~d~~~  121 (333)
T 2dg1_A           44 GLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRL-FVCYLGDFKSTGGIFAATENG  121 (333)
T ss_dssp             CCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCE-EEEECTTSSSCCEEEEECTTS
T ss_pred             CccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcc-eEEECCCCcE-EEEeCCCCCCCceEEEEeCCC
Confidence            5779999999999999876 67889999975 5555443 3456788 9999999998 8877554     788888755


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEE
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~  158 (173)
                        ...+....  .....+++++++|+|++|+++....           .....+.|+++++++++...+......|++++
T Consensus       122 ~~~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~-----------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~  188 (333)
T 2dg1_A          122 DNLQDIIEDL--STAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIA  188 (333)
T ss_dssp             CSCEEEECSS--SSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEE
T ss_pred             CEEEEEEccC--ccCCcccceEECCCCCEEEEecccc-----------ccCCCceEEEEeCCCCEEEEeecCCCcccceE
Confidence              44333211  1235789999999999999874310           01134689999998777776666677899999


Q ss_pred             EccCCCEEEEEec
Q 030700          159 LSEDERFLVVCES  171 (173)
Q Consensus       159 ~~~dg~~lyv~~~  171 (173)
                      |+|||+.||++++
T Consensus       189 ~~~dg~~l~v~~~  201 (333)
T 2dg1_A          189 LSTDEKVLWVTET  201 (333)
T ss_dssp             ECTTSSEEEEEEG
T ss_pred             ECCCCCEEEEEeC
Confidence            9999999999875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.75  E-value=1.9e-16  Score=132.14  Aligned_cols=148  Identities=13%  Similarity=0.087  Sum_probs=110.6

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-----EEEec-cccCccccceEEccCCcEEEEEeCC-CeE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-----WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-QGL   73 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-----~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~-~~i   73 (173)
                      ++..+ +..|.+|++++ ++.||+++ ..++|++++.+|.     ...+. .....|. ||++|+.++.|||++.. +.|
T Consensus       418 ~l~~~-~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~-GLAvD~~~~~LY~tD~~~~~I  495 (791)
T 3m0c_C          418 SLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTV  495 (791)
T ss_dssp             EEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEE
T ss_pred             eeecC-CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcc-eeeeeecCCcEEEEecCCCeE
Confidence            34455 78899999998 78999999 6788999987763     22332 3457899 99999877555999987 467


Q ss_pred             EEEccCC--cEEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-c
Q 030700           74 LKVSEEG--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-D  149 (173)
Q Consensus        74 ~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~  149 (173)
                      .+++.+|  .+.+..    ..+..|++|++||. |.|||+|..                ..++|+++++++...+.+. .
T Consensus       496 ~v~~ldG~~~~~l~~----~~l~~P~gIaVDp~~g~LYwtD~g----------------~~~~I~~~~~dG~~~~~lv~~  555 (791)
T 3m0c_C          496 SVADTKGVKRKTLFR----ENGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTE  555 (791)
T ss_dssp             EEEETTSSSEEEEEE----CTTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECS
T ss_pred             EEEeCCCCeEEEEEe----CCCCCcceEEEecCCCCEEEecCC----------------CCCeEEEEecCCCceEEEEeC
Confidence            7778888  444433    22467999999995 789999854                1258999999865554444 4


Q ss_pred             cccCcceEEEccCCCEEEEEecC
Q 030700          150 GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++..|+||++++.++.|||+|..
T Consensus       556 ~l~~P~GLavD~~~~~LYwaD~~  578 (791)
T 3m0c_C          556 NIQWPNGITLDLLSGRLYWVDSK  578 (791)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT
T ss_pred             CCCCceEEEEecCCCeEEEEeCC
Confidence            58999999999988899999864

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.74  E-value=2.1e-16  Score=119.51  Aligned_cols=155  Identities=14%  Similarity=0.148  Sum_probs=113.6

Q ss_pred             ceecCCccCCcceEEEcCC-CCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-
Q 030700            2 IKLGEGIVNHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      |++.+.....+|+++|+++ +.+|+++ .++.|+++++++...........+. +++++++|++ |++. ..++++++. 
T Consensus        41 ~~~~~~~~~~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~~~~~~v~-~i~~~~dg~l-~v~~-~~gl~~~d~~  117 (326)
T 2ghs_A           41 RVLDETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGS-ALAKISDSKQ-LIAS-DDGLFLRDTA  117 (326)
T ss_dssp             EEEECSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEE-EEEEEETTEE-EEEE-TTEEEEEETT
T ss_pred             EEeeccCCCCCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEEEECCCcce-EEEEeCCCeE-EEEE-CCCEEEEECC
Confidence            5666665677999999995 6888887 6788999997654333223345788 9999999998 7765 457999986 


Q ss_pred             CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceE
Q 030700           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (173)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi  157 (173)
                      +| .+.+.....+.+...+++++++++|++|+++....           .....+.|++++ + ++...+......|+++
T Consensus       118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~-----------~~~~~~~l~~~~-~-g~~~~~~~~~~~~~~i  184 (326)
T 2ghs_A          118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVA-K-GKVTKLFADISIPNSI  184 (326)
T ss_dssp             TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEE-T-TEEEEEEEEESSEEEE
T ss_pred             CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCc-----------CCCCceEEEEEe-C-CcEEEeeCCCcccCCe
Confidence            56 55554432233345789999999999999863210           012347899999 4 7777666667789999


Q ss_pred             EEccCCCEEEEEecC
Q 030700          158 ALSEDERFLVVCESW  172 (173)
Q Consensus       158 ~~~~dg~~lyv~~~~  172 (173)
                      +|+||++.||++++.
T Consensus       185 ~~s~dg~~lyv~~~~  199 (326)
T 2ghs_A          185 CFSPDGTTGYFVDTK  199 (326)
T ss_dssp             EECTTSCEEEEEETT
T ss_pred             EEcCCCCEEEEEECC
Confidence            999999999999753

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=99.74  E-value=1.4e-16  Score=120.44  Aligned_cols=141  Identities=14%  Similarity=0.181  Sum_probs=108.3

Q ss_pred             ccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEE--eccccCccccceEEccCCcEEEEEeCC--CeEEEEccCC-
Q 030700            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWED--WHQVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG-   80 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g-   80 (173)
                      .+..|+++++|+ +|.||+++ ..++|.+++.+|....  .......|. ||++++.+..+|+++.+  ..|.+++.+| 
T Consensus        77 ~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~-giavdp~~g~ly~td~~~~~~I~r~~~dG~  155 (318)
T 3sov_A           77 GLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPR-AIALDPSSGFMYWTDWGEVPKIERAGMDGS  155 (318)
T ss_dssp             CCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEEGGGTEEEEEECSSSCEEEEEETTSC
T ss_pred             CCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCcc-EEEEeCCCCEEEEEecCCCCEEEEEEcCCC
Confidence            478899999997 78999999 6789999998885432  224567899 99999864444999964  5799999888 


Q ss_pred             -cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGV  157 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi  157 (173)
                       .+.+..    ..+..|++|++|+ +++|||+|..                 .++|++++.++...+.+.. .+..|.||
T Consensus       156 ~~~~~~~----~~l~~Pnglavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~P~gl  214 (318)
T 3sov_A          156 SRFIIIN----SEIYWPNGLTLDYEEQKLYWADAK-----------------LNFIHKSNLDGTNRQAVVKGSLPHPFAL  214 (318)
T ss_dssp             SCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSCCSCEEEE
T ss_pred             CeEEEEE----CCCCCccEEEEeccCCEEEEEECC-----------------CCEEEEEcCCCCceEEEecCCCCCceEE
Confidence             444432    1247899999998 5679999854                 3699999998666665655 58999999


Q ss_pred             EEccCCCEEEEEecC
Q 030700          158 ALSEDERFLVVCESW  172 (173)
Q Consensus       158 ~~~~dg~~lyv~~~~  172 (173)
                      ++.  +..+||++..
T Consensus       215 av~--~~~lywtd~~  227 (318)
T 3sov_A          215 TLF--EDILYWTDWS  227 (318)
T ss_dssp             EEE--TTEEEEEETT
T ss_pred             EEe--CCEEEEEecC
Confidence            995  4479999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.73  E-value=5.3e-16  Score=120.98  Aligned_cols=146  Identities=15%  Similarity=0.167  Sum_probs=107.7

Q ss_pred             ccCCcceEEEcC-CCCEEEEcCCCeEEEEcCCCc-EEEe----ccc--cCccccceEEccC-CcEEEEEeCC-CeEEEEc
Q 030700            8 IVNHPEDVSVDG-NGVLYTATGDGWIKRMHPNGT-WEDW----HQV--GSQSLLGLTTTKE-NNVIIVCDSQ-QGLLKVS   77 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~~~~~i~~~~~~g~-~~~~----~~~--~~~p~~gl~~~~~-g~l~~v~~~~-~~i~~~~   77 (173)
                      ....|.+++++| +|.||+++.+++|+++++++. ...+    ...  ...|.++|+++++ +++ |+++.. +.|++++
T Consensus       217 ~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~l-yv~d~~~~~I~~~~  295 (409)
T 3hrp_A          217 FSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNF-YMSDQNLSSVYKIT  295 (409)
T ss_dssp             SCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEE-EEEETTTTEEEEEC
T ss_pred             hcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEE-EEEeCCCCEEEEEe
Confidence            357899999999 899999888889999997653 3333    111  1123229999995 666 999976 4688888


Q ss_pred             cCC-cEEEEecc--CC--------ccccCCccEEEcCCCcEEEEeC-cCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           78 EEG-VTVLVSQF--NG--------SQLRFANDVIEASDGSLYFTVS-STKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        78 ~~g-~~~~~~~~--~~--------~~~~~~~~l~~~~dG~~~v~~~-~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      .+| ...+....  .+        ..+..|++|+++++|++||+|. .                 +++|.++++.++++.
T Consensus       296 ~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~-----------------~~~I~~~~~~~G~v~  358 (409)
T 3hrp_A          296 PDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK-----------------GYCLRKLDILDGYVS  358 (409)
T ss_dssp             TTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT-----------------TCEEEEEETTTTEEE
T ss_pred             cCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC-----------------CCEEEEEECCCCEEE
Confidence            888 55554321  01        2267899999999999999985 3                 368999996567776


Q ss_pred             Eeecc---------------ccCcceEEEccCCCEEEEEecC
Q 030700          146 LVLDG---------------LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       146 ~~~~~---------------~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .++..               +..|.||+++++| .|||+|..
T Consensus       359 ~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g-~lyVad~~  399 (409)
T 3hrp_A          359 TVAGQVDVASQIDGTPLEATFNYPYDICYDGEG-GYWIAEAW  399 (409)
T ss_dssp             EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSS-EEEEEEST
T ss_pred             EEeCCCCCCCcCCCChhceEeCCceEEEEcCCC-CEEEEECC
Confidence            66543               6789999999995 69999875

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=99.72  E-value=9.4e-16  Score=115.68  Aligned_cols=145  Identities=16%  Similarity=0.169  Sum_probs=108.4

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE-Eec-cccCccccceEEccCCcEEEEEeCC--CeEEEEc
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE-DWH-QVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVS   77 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~-~~~-~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~   77 (173)
                      +....+..|+++++|+ +++||+++ ..++|.+++.+|+.. .+. .....|. ++++|+.+..+|+++.+  ..|.+++
T Consensus        71 ~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~iavdp~~g~ly~~d~~~~~~I~~~~  149 (316)
T 1ijq_A           71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGG  149 (316)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcc-eEEeCCCCCEEEEEccCCCCeEEEEc
Confidence            3334478999999997 77999998 678999999888633 332 3456899 99999855445999976  4688888


Q ss_pred             cCC-c-EEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---cc
Q 030700           78 EEG-V-TVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GL  151 (173)
Q Consensus        78 ~~g-~-~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~  151 (173)
                      .+| . +.+..    ..+..|++|++|++ ++|||+|..                 .++|+++|.++...+.+..   .+
T Consensus       150 ~dG~~~~~~~~----~~~~~P~gla~d~~~~~lY~~D~~-----------------~~~I~~~d~dg~~~~~~~~~~~~~  208 (316)
T 1ijq_A          150 LNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRL  208 (316)
T ss_dssp             TTSCCEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTT
T ss_pred             CCCCCeEEEEE----CCCCCceEEEEeccCCEEEEEECC-----------------CCeEEEEecCCCceEEEeecCCcc
Confidence            888 3 33332    13478999999985 579999854                 3699999998655555543   36


Q ss_pred             cCcceEEEccCCCEEEEEecC
Q 030700          152 YFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ..|.||+++  +..|||++..
T Consensus       209 ~~P~giav~--~~~ly~~d~~  227 (316)
T 1ijq_A          209 AHPFSLAVF--EDKVFWTDII  227 (316)
T ss_dssp             SSEEEEEEE--TTEEEEEETT
T ss_pred             CCcEEEEEE--CCEEEEEECC
Confidence            889999995  4579999853

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.72  E-value=8.7e-16  Score=113.31  Aligned_cols=145  Identities=17%  Similarity=0.225  Sum_probs=107.6

Q ss_pred             ecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEec---cccCccccceEEccCCcEEEEEeCC-CeEEEEcc
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWH---QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE   78 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~---~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~   78 (173)
                      +.......|.+++++++|++|+++ .+++|++++++|+.....   .....|. +|+++++|++ |+++.. +.|.+++.
T Consensus       115 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p~-~i~~~~~g~l-~v~~~~~~~i~~~~~  192 (286)
T 1q7f_A          115 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN-GVVVNDKQEI-FISDNRAHCVKVFNY  192 (286)
T ss_dssp             ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE-EEEECSSSEE-EEEEGGGTEEEEEET
T ss_pred             ecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEEEeCCCCccCCcE-EEEECCCCCE-EEEECCCCEEEEEcC
Confidence            333445789999999999999998 568899999888755432   2335689 9999999997 998865 56888887


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCc-eEEEEcCCCCeeEEeecc--ccC
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHG-VLLKYDPSTNQTSLVLDG--LYF  153 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~-~v~~~d~~~~~~~~~~~~--~~~  153 (173)
                      +|  ...+..  .+ .+..|.+|+++++|++|+++..                 ++ +|.+|++++..+..+...  ...
T Consensus       193 ~g~~~~~~~~--~g-~~~~p~~i~~d~~G~l~v~~~~-----------------~~~~i~~~~~~g~~~~~~~~~~~~~~  252 (286)
T 1q7f_A          193 EGQYLRQIGG--EG-ITNYPIGVGINSNGEILIADNH-----------------NNFNLTIFTQDGQLISALESKVKHAQ  252 (286)
T ss_dssp             TCCEEEEESC--TT-TSCSEEEEEECTTCCEEEEECS-----------------SSCEEEEECTTSCEEEEEEESSCCSC
T ss_pred             CCCEEEEEcc--CC-ccCCCcEEEECCCCCEEEEeCC-----------------CCEEEEEECCCCCEEEEEcccCCCCc
Confidence            77  333321  11 2357999999999999999743                 23 899999875555555443  345


Q ss_pred             cceEEEccCCCEEEEEec
Q 030700          154 ANGVALSEDERFLVVCES  171 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~~  171 (173)
                      |.+|+++|+|+ |||++.
T Consensus       253 ~~~i~~~~~g~-l~vs~~  269 (286)
T 1q7f_A          253 CFDVALMDDGS-VVLASK  269 (286)
T ss_dssp             EEEEEEETTTE-EEEEET
T ss_pred             ceeEEECCCCc-EEEECC
Confidence            88999999995 888863

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=99.72  E-value=2.7e-16  Score=124.12  Aligned_cols=167  Identities=12%  Similarity=0.145  Sum_probs=114.3

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcCCC-eEEEEcC-CCcEEEec---c------ccCccccceEEcc----CCcEEEE
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDG-WIKRMHP-NGTWEDWH---Q------VGSQSLLGLTTTK----ENNVIIV   66 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~~-~i~~~~~-~g~~~~~~---~------~~~~p~~gl~~~~----~g~l~~v   66 (173)
                      +.++.+ +..|.+++++|+|+|||++..+ +|++++. +|....+.   .      ....+. ||+++|    ++.+ |+
T Consensus        20 ~~~a~~-l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gll-gia~~Pdf~~~g~l-Yv   96 (454)
T 1cru_A           20 KVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYI-YI   96 (454)
T ss_dssp             EEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEE-EE
T ss_pred             EEEECC-CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCcee-EEEECCCcCcCCEE-EE
Confidence            567777 8999999999999999999664 7999985 46554332   1      124567 999998    4555 99


Q ss_pred             EeCC-------------CeEEEEcc---CC----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCc-----ccc
Q 030700           67 CDSQ-------------QGLLKVSE---EG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTP-----AEY  121 (173)
Q Consensus        67 ~~~~-------------~~i~~~~~---~g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~-----~~~  121 (173)
                      +...             ..|+++..   ++    .+.+.........+.+++|+++|||+|||+........     .+.
T Consensus        97 ~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~  176 (454)
T 1cru_A           97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPN  176 (454)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCC
T ss_pred             EEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECCCCCCCcccccccc
Confidence            8742             35777763   22    23344333333346789999999999999965422110     000


Q ss_pred             --e--------eeecccCCCceEEEEcCCCC-----------eeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          122 --Y--------LDLVSGEPHGVLLKYDPSTN-----------QTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       122 --~--------~~~~~~~~~~~v~~~d~~~~-----------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                        .        ...-.....|+|+|+++++.           ..+.++.++++|.||+|+|+|+ ||++|.+
T Consensus       177 ~~~~~p~~~~~~aq~~~~~~G~IlRi~~dG~ip~~Npf~~~~~~ei~a~G~RNp~gla~dp~G~-L~~~d~g  247 (454)
T 1cru_A          177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (454)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             ccccccccccccccCCCCCCeeEEEEeCCCCCCCCCCCCCCCcceEEEECCCCcceEEECCCCC-EEEEecC
Confidence              0        00001123589999999865           4677888999999999999865 9999875

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.72  E-value=7.7e-16  Score=125.73  Aligned_cols=144  Identities=16%  Similarity=0.164  Sum_probs=109.9

Q ss_pred             ccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-EEEec-cccCccccceEEccCCcEEEEEeCCC-eEEEEccCC--
Q 030700            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG--   80 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g--   80 (173)
                      .+..|.+|++|+ ++.||++| ..++|++++++|. .+.+. .....|. ||++|..++.||+++... .|.+++.+|  
T Consensus       347 ~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~-GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~  425 (619)
T 3s94_A          347 DIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPD-GIAVDWVARNLYWTDTGTDRIEVTRLNGTM  425 (619)
T ss_dssp             CCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEEEEEETTSCS
T ss_pred             ccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcC-ceEEecccCcEEEEeCCCCcEEEEeCCCCe
Confidence            377899999998 78999999 6789999998874 33333 3356899 999997444349999874 566666777  


Q ss_pred             cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVA  158 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~  158 (173)
                      .+.+..    ..+..|++|+++| +|.|||+|..                ...+|+++++++.....+. ..+..|+||+
T Consensus       426 ~~~l~~----~~l~~P~~iavdp~~G~ly~tD~g----------------~~~~I~r~~~dG~~~~~l~~~~l~~P~Gla  485 (619)
T 3s94_A          426 RKILIS----EDLEEPRAIVLDPMVGYMYWTDWG----------------EIPKIERAALDGSDRVVLVNTSLGWPNGLA  485 (619)
T ss_dssp             CEEEEC----TTCCSEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCSCEEEECSSCSCEEEEE
T ss_pred             EEEEEE----CCCCCeeeEEEEcCCCcEEEecCC----------------CCCEEEEEccCCCccEEEEeCCCCCCeeeE
Confidence            444442    2357899999999 4899999854                1258999999865444444 4589999999


Q ss_pred             EccCCCEEEEEecC
Q 030700          159 LSEDERFLVVCESW  172 (173)
Q Consensus       159 ~~~dg~~lyv~~~~  172 (173)
                      ++++++.|||+|+.
T Consensus       486 lD~~~~~LY~aD~~  499 (619)
T 3s94_A          486 LDYDEGKIYWGDAK  499 (619)
T ss_dssp             EETTTTEEEEEETT
T ss_pred             EcccCCEEEEEECC
Confidence            99988899999975

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=99.72  E-value=8.1e-16  Score=117.62  Aligned_cols=146  Identities=16%  Similarity=0.194  Sum_probs=108.3

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEE--eccccCccccceEEccCCcEEEEEeCC--CeEEEE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWED--WHQVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKV   76 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~   76 (173)
                      ++....+..|+++++|+ +|+||+++ ..++|.+++.+|+...  +......|. +|++|+.+..+|+++..  ..|.++
T Consensus       109 ~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~-~iavdp~~g~ly~td~~~~~~I~r~  187 (349)
T 3v64_C          109 EVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR-AIALHPMEGTIYWTDWGNTPRIEAS  187 (349)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEE-EEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcc-eEEEecCcCeEEEeccCCCCEEEEE
Confidence            33334478899999997 78999999 6678999998886432  223456899 99999855555999976  468888


Q ss_pred             ccCC-c-EEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-cccc
Q 030700           77 SEEG-V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLY  152 (173)
Q Consensus        77 ~~~g-~-~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~  152 (173)
                      +.+| . +.+..    ..+..|++|++|+ +++|||+|..                 .++|++++.++...+.+. .++.
T Consensus       188 ~~dG~~~~~~~~----~~~~~PnGla~d~~~~~lY~aD~~-----------------~~~I~~~~~dG~~~~~~~~~~~~  246 (349)
T 3v64_C          188 SMDGSGRRIIAD----THLFWPNGLTIDYAGRRMYWVDAK-----------------HHVIERANLDGSHRKAVISQGLP  246 (349)
T ss_dssp             ETTSCSCEESCC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEECSSCS
T ss_pred             eCCCCCcEEEEE----CCCCCcceEEEeCCCCEEEEEECC-----------------CCEEEEEeCCCCceEEEEeCCCC
Confidence            8888 3 33322    2346899999997 5689999854                 368999999865544443 4588


Q ss_pred             CcceEEEccCCCEEEEEecC
Q 030700          153 FANGVALSEDERFLVVCESW  172 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .|.||++.  +..|||++..
T Consensus       247 ~P~giav~--~~~ly~td~~  264 (349)
T 3v64_C          247 HPFAITVF--EDSLYWTDWH  264 (349)
T ss_dssp             SEEEEEEE--TTEEEEEETT
T ss_pred             CceEEEEE--CCEEEEecCC
Confidence            99999993  4579999864

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=99.72  E-value=3.7e-16  Score=122.63  Aligned_cols=145  Identities=10%  Similarity=0.153  Sum_probs=106.0

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE-Eec--cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC--
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE-DWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--   80 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~-~~~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g--   80 (173)
                      +..|.+++++| +|.||+++ .+++|+++++++... .+.  .....|. +|+++++|+.||+++.. +.|.+++.++  
T Consensus       225 ~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~-gia~~pdG~~lyv~d~~~~~I~~~~~d~~~  303 (430)
T 3tc9_A          225 GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEF-HIQFHPSGNYAYIVVVNQHYILRSDYDWKT  303 (430)
T ss_dssp             CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCE-EEEECTTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcce-eEEEcCCCCEEEEEECCCCEEEEEeCCccc
Confidence            57899999999 89999999 778999999876543 332  2235799 99999999955999876 5677777543  


Q ss_pred             --c---EEEEecc------C----CccccCCc-cEEE--------cCCCcEEEEeCcCCcCcccceeeecccCCCceEEE
Q 030700           81 --V---TVLVSQF------N----GSQLRFAN-DVIE--------ASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLK  136 (173)
Q Consensus        81 --~---~~~~~~~------~----~~~~~~~~-~l~~--------~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~  136 (173)
                        +   ..+....      +    ...+..|. ++++        |++|.|||+|..                 +++|.+
T Consensus       304 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~-----------------n~~I~~  366 (430)
T 3tc9_A          304 KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRE-----------------NHCIRI  366 (430)
T ss_dssp             TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGG-----------------GTEEEE
T ss_pred             ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECC-----------------CcEEEE
Confidence              1   2233210      1    12367888 7888        466899999853                 358999


Q ss_pred             EcCCCCeeEEeecc------------------ccCcceEEEccCCCEEEEEecC
Q 030700          137 YDPSTNQTSLVLDG------------------LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       137 ~d~~~~~~~~~~~~------------------~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++++ |.+..++..                  +..|.||++++++..|||+|+.
T Consensus       367 i~~~-G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  419 (430)
T 3tc9_A          367 LTPQ-GRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRE  419 (430)
T ss_dssp             ECTT-SEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             ECCC-CcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECC
Confidence            9976 666555421                  5679999999976789999974

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=99.71  E-value=1.8e-16  Score=121.42  Aligned_cols=164  Identities=12%  Similarity=0.138  Sum_probs=113.6

Q ss_pred             ceecCCccCCcceEEEcCCCC-EEEEcCCCeEEEEcCCCcEEE-ec-------cccCccccceEEccC----CcEEEEEe
Q 030700            2 IKLGEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHPNGTWED-WH-------QVGSQSLLGLTTTKE----NNVIIVCD   68 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g~~~~-~~-------~~~~~p~~gl~~~~~----g~l~~v~~   68 (173)
                      +.++.+ +..|.+++++|+|+ |||++..++|++++.+|+... +.       .....+. ||+++++    +.+ |++.
T Consensus        11 ~~va~~-l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~-gia~~pdf~~~g~l-Yv~~   87 (353)
T 2g8s_A           11 EVLQDK-LDHPWALAFLPDNHGMLITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLL-DVVLAPDFAQSRRI-WLSY   87 (353)
T ss_dssp             EEEEEE-ESSEEEEEECSTTCCEEEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEE-EEEECTTHHHHCEE-EEEE
T ss_pred             EEEECC-CCCcEEEEEcCCCCEEEEEeCCceEEEEeCCCceeeEecCCcccccCCCCCce-eEEECCCCCCCCEE-EEEE
Confidence            566665 89999999999999 999998899999988776432 11       1123578 9999984    565 9986


Q ss_pred             CC--------CeEEEEcc--C-C-c---EEEEeccCC--ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCC
Q 030700           69 SQ--------QGLLKVSE--E-G-V---TVLVSQFNG--SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (173)
Q Consensus        69 ~~--------~~i~~~~~--~-g-~---~~~~~~~~~--~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~  131 (173)
                      ..        ..|.+++.  + + .   +.+......  ...+.+++|+++|||.||++......  .+....  .....
T Consensus        88 ~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~--~~~~q~--~~~~~  163 (353)
T 2g8s_A           88 SEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQ--RPTAQD--LDKLQ  163 (353)
T ss_dssp             EEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTC--GGGGGC--TTSCT
T ss_pred             eCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCC--CCccCC--CCCCC
Confidence            43        35777653  2 2 2   223333221  12356899999999999999754221  110000  12345


Q ss_pred             ceEEEEcCCCC-------------eeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          132 GVLLKYDPSTN-------------QTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       132 ~~v~~~d~~~~-------------~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++|+|+++++.             ..+.++.++++|.||+|+|+...||++|.+
T Consensus       164 g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~d~g  217 (353)
T 2g8s_A          164 GKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLNEHG  217 (353)
T ss_dssp             TEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEEEEC
T ss_pred             eEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEEecC
Confidence            79999999854             456778889999999999955579999875

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.71  E-value=1.6e-15  Score=111.94  Aligned_cols=142  Identities=15%  Similarity=0.232  Sum_probs=106.8

Q ss_pred             CCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEecc-------ccCccccceEE-ccCCcEEEEEeC--CCeEE
Q 030700            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQ-------VGSQSLLGLTT-TKENNVIIVCDS--QQGLL   74 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~-------~~~~p~~gl~~-~~~g~l~~v~~~--~~~i~   74 (173)
                      ++.+..|.+++++++|.+|+++ .+++|.+++++|+......       ....|. ++++ ++++++ |+++.  ...+.
T Consensus        26 ~g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~~~p~-~i~~~~~~g~l-~v~~~~~~~~i~  103 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPN-RVAVVRNSGDI-IVTERSPTHQIQ  103 (286)
T ss_dssp             TTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEE-EEEEETTTTEE-EEEECGGGCEEE
T ss_pred             CCccCCCceEEECCCCCEEEEECCCCEEEEECCCCcEEEEecccCCCcccccCce-EEEEEcCCCeE-EEEcCCCCCEEE
Confidence            4567899999999999999987 6788999998887543221       124688 9999 578888 99885  45688


Q ss_pred             EEccCC-c-EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--cc
Q 030700           75 KVSEEG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DG  150 (173)
Q Consensus        75 ~~~~~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~  150 (173)
                      +++.+| . ..+.    ......|++++++++|++|+++..                 +++|+++++++.....+.  ..
T Consensus       104 ~~d~~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~g~~~~~~~~~~~  162 (286)
T 1q7f_A          104 IYNQYGQFVRKFG----ATILQHPRGVTVDNKGRIIVVECK-----------------VMRVIIFDQNGNVLHKFGCSKH  162 (286)
T ss_dssp             EECTTSCEEEEEC----TTTCSCEEEEEECTTSCEEEEETT-----------------TTEEEEECTTSCEEEEEECTTT
T ss_pred             EECCCCcEEEEec----CccCCCceEEEEeCCCCEEEEECC-----------------CCEEEEEcCCCCEEEEeCCCCc
Confidence            888777 3 3331    122357899999999999999643                 368999998754444443  34


Q ss_pred             ccCcceEEEccCCCEEEEEec
Q 030700          151 LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      +..|++|+++++|+ +||+++
T Consensus       163 ~~~p~~i~~~~~g~-l~v~~~  182 (286)
T 1q7f_A          163 LEFPNGVVVNDKQE-IFISDN  182 (286)
T ss_dssp             CSSEEEEEECSSSE-EEEEEG
T ss_pred             cCCcEEEEECCCCC-EEEEEC
Confidence            67899999999986 999875

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=99.71  E-value=1e-15  Score=118.48  Aligned_cols=145  Identities=16%  Similarity=0.183  Sum_probs=108.1

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE--EeccccCccccceEEccCCcEEEEEeCCC--eEEEEc
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVS   77 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~   77 (173)
                      +....+..|+++++|+ ++.||+++ ..++|.+++.+|+..  .+......|. +|++++.+..||+++...  .|.+++
T Consensus       153 ~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~-giavdp~~g~ly~td~~~~~~I~r~~  231 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPR-AIALHPMEGTIYWTDWGNTPRIEASS  231 (386)
T ss_dssp             EECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEE-EEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCc-EEEEEcCCCeEEEeccCCCCEEEEEe
Confidence            3344478999999997 78999999 667899999888643  2233456899 999998655559999764  688888


Q ss_pred             cCC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccC
Q 030700           78 EEG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYF  153 (173)
Q Consensus        78 ~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~  153 (173)
                      .+|  ...+..    ..+..|++|++|+ +++|||+|..                 .++|++++.++...+.+. .++..
T Consensus       232 ~dG~~~~~~~~----~~~~~PnGlavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~  290 (386)
T 3v65_B          232 MDGSGRRIIAD----THLFWPNGLTIDYAGRRMYWVDAK-----------------HHVIERANLDGSHRKAVISQGLPH  290 (386)
T ss_dssp             TTSCSCEEEEC----SSCSCEEEEEEEGGGTEEEEEETT-----------------TTEEEEECTTSCSCEEEECSSCSS
T ss_pred             CCCCCcEEEEE----CCCCCeeeEEEeCCCCEEEEEECC-----------------CCEEEEEeCCCCeeEEEEECCCCC
Confidence            888  444432    2246899999997 5689999854                 368999999865444444 46889


Q ss_pred             cceEEEccCCCEEEEEecC
Q 030700          154 ANGVALSEDERFLVVCESW  172 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~~~  172 (173)
                      |.||++  ++..|||++..
T Consensus       291 P~giav--~~~~ly~td~~  307 (386)
T 3v65_B          291 PFAITV--FEDSLYWTDWH  307 (386)
T ss_dssp             EEEEEE--ETTEEEEEETT
T ss_pred             ceEEEE--ECCEEEEeeCC
Confidence            999999  34479999864

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=99.71  E-value=2.5e-15  Score=110.25  Aligned_cols=143  Identities=15%  Similarity=0.134  Sum_probs=106.4

Q ss_pred             CCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE-Eecc-ccCccccceEEccCCcEEEEEeCC---CeEEEEcc
Q 030700            6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE-DWHQ-VGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE   78 (173)
Q Consensus         6 ~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~-~~~~-~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~   78 (173)
                      ...+..|.++++++ ++.||+++ ..++|.+++.+|+.. .+.. ....|. ++++++++..+|+++..   ..|.+++.
T Consensus        75 ~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~-~i~vd~~~g~lyv~~~~~~~~~I~~~~~  153 (267)
T 1npe_A           75 RQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIETSHM  153 (267)
T ss_dssp             CTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEEEEET
T ss_pred             ECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCcc-EEEEeeCCCEEEEEECCCCCcEEEEEec
Confidence            33468999999998 57999999 668999999887532 2222 346899 99999954444999865   36777887


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcc
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN  155 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~  155 (173)
                      +|  .+.+..    ..+..|++|++++++ ++||++..                 .++|++++++++....+...+..|.
T Consensus       154 dg~~~~~~~~----~~~~~P~gia~d~~~~~lyv~d~~-----------------~~~I~~~~~~g~~~~~~~~~~~~P~  212 (267)
T 1npe_A          154 DGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGLQYPF  212 (267)
T ss_dssp             TSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECCCSEE
T ss_pred             CCCCcEEEEE----CCCCCCcEEEEcCCCCEEEEEECC-----------------CCEEEEEecCCCceEEEecCCCCce
Confidence            77  344432    124689999999975 79999753                 3689999998666666666788899


Q ss_pred             eEEEccCCCEEEEEecC
Q 030700          156 GVALSEDERFLVVCESW  172 (173)
Q Consensus       156 gi~~~~dg~~lyv~~~~  172 (173)
                      ||+++  ++.|||++..
T Consensus       213 gi~~d--~~~lyva~~~  227 (267)
T 1npe_A          213 AVTSY--GKNLYYTDWK  227 (267)
T ss_dssp             EEEEE--TTEEEEEETT
T ss_pred             EEEEe--CCEEEEEECC
Confidence            99875  5689999864

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=99.70  E-value=1.7e-15  Score=117.77  Aligned_cols=146  Identities=16%  Similarity=0.191  Sum_probs=109.5

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEE-e-ccccCccccceEEccCCcEEEEEeCC--CeEEEE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWED-W-HQVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKV   76 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~-~-~~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~   76 (173)
                      ++....+..|++|++|+ +++||+++ ..++|.+.+++|+... + ......|. +|++|+.+..||+++.+  ..|.++
T Consensus       152 ~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~-~iavdp~~g~ly~td~~~~~~I~~~  230 (400)
T 3p5b_L          152 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKG  230 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEE-EEEEETTTTEEEEEECSSSCCEEEE
T ss_pred             EEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcc-eEEEecccCeEEEEeCCCCCEEEEE
Confidence            34444578999999998 78999999 6789999999886432 2 23456799 99999865555999965  468888


Q ss_pred             ccCC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---c
Q 030700           77 SEEG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---G  150 (173)
Q Consensus        77 ~~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~  150 (173)
                      +.+|  ...+..    ..+..|++|++|+ +++|||+|..                 ..+|+++|.++...+.+..   .
T Consensus       231 ~~dG~~~~~~~~----~~l~~P~glavd~~~~~lY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~  289 (400)
T 3p5b_L          231 GLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKR  289 (400)
T ss_dssp             ETTSCSCEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCCCEEEEECSST
T ss_pred             eCCCCccEEEEE----CCCCceEEEEEEeCCCEEEEEECC-----------------CCEEEEEeCCCCccEEEEeCCCC
Confidence            8888  444432    2246899999997 4679999854                 2689999998766655554   3


Q ss_pred             ccCcceEEEccCCCEEEEEecC
Q 030700          151 LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +..|.||++  +++.|||+|..
T Consensus       290 l~~P~gl~v--~~~~lywtd~~  309 (400)
T 3p5b_L          290 LAHPFSLAV--FEDKVFWTDII  309 (400)
T ss_dssp             TSSEEEEEE--ETTEEEEEESS
T ss_pred             CCCCEEEEE--eCCEEEEecCC
Confidence            788999998  45579999853

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.70  E-value=2.1e-15  Score=117.62  Aligned_cols=145  Identities=11%  Similarity=0.064  Sum_probs=106.2

Q ss_pred             CccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC--eEEEEccCC--
Q 030700            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVSEEG--   80 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~~~g--   80 (173)
                      ..+..|.+|+++++|+||+++ .+++|++++++ +.+..+......|  .++++++++.||+++...  .+++++.++  
T Consensus       128 a~~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~~--~ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~  205 (409)
T 3hrp_A          128 AKFKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKGG--KPAVTKDKQRVYSIGWEGTHTVYVYMKASGW  205 (409)
T ss_dssp             CCCCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCBC--BCEECTTSSEEEEEBSSTTCEEEEEEGGGTT
T ss_pred             cccCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCCC--ceeEecCCCcEEEEecCCCceEEEEEcCCCc
Confidence            357899999999999999998 56899999986 4555554444444  389999998879988753  788888654  


Q ss_pred             c-EEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe----eccc--c
Q 030700           81 V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV----LDGL--Y  152 (173)
Q Consensus        81 ~-~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~----~~~~--~  152 (173)
                      . ..+.. ........|++++++| +|.||+++.                  +++|+++|++++....+    ..+.  .
T Consensus       206 ~~~~~g~-~~~~~~~~p~~iav~p~~g~lyv~d~------------------~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          206 APTRIGQ-LGSTFSGKIGAVALDETEEWLYFVDS------------------NKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             CEEEEEE-CCTTSCSCCCBCEECTTSSEEEEECT------------------TCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             eeEEeee-ccchhcCCcEEEEEeCCCCeEEEEEC------------------CCcEEEEECCCCCEEEEecccccCCCCC
Confidence            3 23321 1111346899999999 789999753                  26899999987766555    2221  2


Q ss_pred             Ccc-eEEEccCCCEEEEEecC
Q 030700          153 FAN-GVALSEDERFLVVCESW  172 (173)
Q Consensus       153 ~p~-gi~~~~dg~~lyv~~~~  172 (173)
                      .|. +|+|+|++..|||+++.
T Consensus       267 ~P~~~ia~~p~~g~lyv~d~~  287 (409)
T 3hrp_A          267 NPGPYLIYYFVDSNFYMSDQN  287 (409)
T ss_dssp             SSCCEEEEETTTTEEEEEETT
T ss_pred             CccccEEEeCCCCEEEEEeCC
Confidence            345 99999987789999864

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.70  E-value=2.4e-15  Score=112.47  Aligned_cols=137  Identities=12%  Similarity=0.169  Sum_probs=102.6

Q ss_pred             cCCcceEEEcCCCCEEEEcC------------------CCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC
Q 030700            9 VNHPEDVSVDGNGVLYTATG------------------DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~------------------~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~   69 (173)
                      +..|.+++++++|++|++|.                  .+.|+++++ +|++..+. ....|+ |++++++|+.||+++.
T Consensus       130 ~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~-gl~~spdg~~lyv~~~  207 (305)
T 3dr2_A          130 LNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPN-GLAFSPDEQTLYVSQT  207 (305)
T ss_dssp             CSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEE-EEEECTTSSEEEEEEC
T ss_pred             cCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCc-ceEEcCCCCEEEEEec
Confidence            46788999999999999751                  367999997 57766655 566899 9999999997799987


Q ss_pred             C------CeEEEEccCC--c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030700           70 Q------QGLLKVSEEG--V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (173)
Q Consensus        70 ~------~~i~~~~~~g--~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  138 (173)
                      .      +.|++++.++  .   +.+...    ....|++|++|++|++|+++.                   +.|++|+
T Consensus       208 ~~~~~~~~~i~~~~~~~~~l~~~~~~~~~----~~~~pdgi~~d~~G~lwv~~~-------------------~gv~~~~  264 (305)
T 3dr2_A          208 PEQGHGSVEITAFAWRDGALHDRRHFASV----PDGLPDGFCVDRGGWLWSSSG-------------------TGVCVFD  264 (305)
T ss_dssp             CC---CCCEEEEEEEETTEEEEEEEEECC----SSSCCCSEEECTTSCEEECCS-------------------SEEEEEC
T ss_pred             CCcCCCCCEEEEEEecCCCccCCeEEEEC----CCCCCCeEEECCCCCEEEecC-------------------CcEEEEC
Confidence            5      4677777432  2   222221    225789999999999999852                   3699999


Q ss_pred             CCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          139 PSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       139 ~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      +++.....+.. ...+..++|+++++.||++..
T Consensus       265 ~~g~~~~~~~~-~~~~~~~~f~~d~~~L~it~~  296 (305)
T 3dr2_A          265 SDGQLLGHIPT-PGTASNCTFDQAQQRLFITGG  296 (305)
T ss_dssp             TTSCEEEEEEC-SSCCCEEEECTTSCEEEEEET
T ss_pred             CCCCEEEEEEC-CCceeEEEEeCCCCEEEEEcC
Confidence            97554444443 336889999999999999864

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.70  E-value=7.1e-16  Score=116.03  Aligned_cols=146  Identities=14%  Similarity=0.121  Sum_probs=102.6

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCC-CcEEEe-ccc-------cCccccceEE---ccCCcEEEEEeC-----
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-GTWEDW-HQV-------GSQSLLGLTT---TKENNVIIVCDS-----   69 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~-g~~~~~-~~~-------~~~p~~gl~~---~~~g~l~~v~~~-----   69 (173)
                      -..||+++||+ +|.+|+++ .++.|.+++++ +....+ .+.       ...+. ||.+   |++++++++++.     
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~s-Gl~~~~~D~~grL~vv~~~~~af~   90 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMS-GLSLLTHDNSKRLFAVMKNAKSFN   90 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEE-EEEESSSSSCCEEEEEEEETTTTC
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceee-EEEEeccCCCCcEEEEEccccccc
Confidence            36799999998 78999999 78999999987 444433 111       11467 9999   789888443552     


Q ss_pred             --------CCeEEEEccC----C-cEEEEec---cC------CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecc
Q 030700           70 --------QQGLLKVSEE----G-VTVLVSQ---FN------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS  127 (173)
Q Consensus        70 --------~~~i~~~~~~----g-~~~~~~~---~~------~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~  127 (173)
                              ...+++++.+    + ....++.   ..      ++....+++|++|++|++||++..              
T Consensus        91 ~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~--------------  156 (334)
T 2p9w_A           91 FADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFAL--------------  156 (334)
T ss_dssp             TTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEE--------------
T ss_pred             ccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCC--------------
Confidence                    2458888855    6 4433332   11      113346999999999999999743              


Q ss_pred             cCCCceEEEEcCCCCeeEEeecc------ccCcceEEEccCCCEEEEEec
Q 030700          128 GEPHGVLLKYDPSTNQTSLVLDG------LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       128 ~~~~~~v~~~d~~~~~~~~~~~~------~~~p~gi~~~~dg~~lyv~~~  171 (173)
                        +.+.|++++|++..+..+...      ...+|||+++|||+.|+++++
T Consensus       157 --~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~  204 (334)
T 2p9w_A          157 --GMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGG  204 (334)
T ss_dssp             --SSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESS
T ss_pred             --CCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcC
Confidence              115899999995544444321      344789999999999999876

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.69  E-value=6.4e-15  Score=109.32  Aligned_cols=139  Identities=18%  Similarity=0.277  Sum_probs=104.4

Q ss_pred             cCCcceEEEcCCCCEEEEcC------------------CCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC
Q 030700            9 VNHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~------------------~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ...|.+++++++|++|+++.                  .+.|++++++|+...+......|+ +++++++|+++ +++..
T Consensus       114 ~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-gi~~s~dg~~l-v~~~~  191 (296)
T 3e5z_A          114 LNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKPN-GLAFLPSGNLL-VSDTG  191 (296)
T ss_dssp             CCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSEE-EEEECTTSCEE-EEETT
T ss_pred             CCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCCc-cEEECCCCCEE-EEeCC
Confidence            45688999999999999752                  458999998888776666667899 99999999995 77765


Q ss_pred             -CeEEEEcc--CC-c-EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           71 -QGLLKVSE--EG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        71 -~~i~~~~~--~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                       ..+++++.  +| . ... ... ......|++|+++++|++|+++ .                  ++|++|++++....
T Consensus       192 ~~~i~~~~~~~~g~~~~~~-~~~-~~~~~~p~~i~~d~~G~l~v~~-~------------------~~v~~~~~~g~~~~  250 (296)
T 3e5z_A          192 DNATHRYCLNARGETEYQG-VHF-TVEPGKTDGLRVDAGGLIWASA-G------------------DGVHVLTPDGDELG  250 (296)
T ss_dssp             TTEEEEEEECSSSCEEEEE-EEE-CCSSSCCCSEEEBTTSCEEEEE-T------------------TEEEEECTTSCEEE
T ss_pred             CCeEEEEEECCCCcCcCCC-eEe-eCCCCCCCeEEECCCCCEEEEc-C------------------CeEEEECCCCCEEE
Confidence             46777764  45 5 211 111 1123578999999999999995 2                  58999999854444


Q ss_pred             EeeccccCcceEEE-ccCCCEEEEEec
Q 030700          146 LVLDGLYFANGVAL-SEDERFLVVCES  171 (173)
Q Consensus       146 ~~~~~~~~p~gi~~-~~dg~~lyv~~~  171 (173)
                      .+..... |..++| +||++.||++..
T Consensus       251 ~~~~~~~-~~~~~f~~~d~~~L~v~t~  276 (296)
T 3e5z_A          251 RVLTPQT-TSNLCFGGPEGRTLYMTVS  276 (296)
T ss_dssp             EEECSSC-CCEEEEESTTSCEEEEEET
T ss_pred             EEECCCC-ceeEEEECCCCCEEEEEcC
Confidence            4444444 899999 689999999864

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.69  E-value=3.5e-15  Score=108.85  Aligned_cols=142  Identities=20%  Similarity=0.321  Sum_probs=104.6

Q ss_pred             ccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcE-EEec-cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-cE
Q 030700            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTW-EDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VT   82 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~-~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-~~   82 (173)
                      .+..|.+++++++|++|+++ .++.|++++..... .... .....|. +|+++++|++ |+++.. .++.+++.++ ..
T Consensus       106 ~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l-~v~~~~~~~i~~~~~~~~~~  183 (270)
T 1rwi_B          106 GLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD-GVAVDNSGNV-YVTDTDNNRVVKLEAESNNQ  183 (270)
T ss_dssp             SCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCC-CEEECTTCCE-EEEEGGGTEEEEECTTTCCE
T ss_pred             CcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCce-eEEEeCCCCE-EEEECCCCEEEEEecCCCce
Confidence            35789999999999999988 56789999754322 2221 2234789 9999999997 998865 5788888766 33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~  161 (173)
                      .... .  ..+..|.+|+++++|++|+++..                 +++|+++++++....... .++..|.+|++++
T Consensus       184 ~~~~-~--~~~~~p~~i~~d~~g~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~  243 (270)
T 1rwi_B          184 VVLP-F--TDITAPWGIAVDEAGTVYVTEHN-----------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDS  243 (270)
T ss_dssp             EECC-C--SSCCSEEEEEECTTCCEEEEETT-----------------TSCEEEECTTCSCCEECCCCSCSCEEEEEECT
T ss_pred             Eeec-c--cCCCCceEEEECCCCCEEEEECC-----------------CCcEEEEcCCCCcceeeccCCCCCceeEEECC
Confidence            2211 1  12367899999999999999743                 368999999865544333 3467899999999


Q ss_pred             CCCEEEEEecC
Q 030700          162 DERFLVVCESW  172 (173)
Q Consensus       162 dg~~lyv~~~~  172 (173)
                      +|+ |||++..
T Consensus       244 ~g~-l~v~~~~  253 (270)
T 1rwi_B          244 DRT-VYVADRG  253 (270)
T ss_dssp             TCC-EEEEEGG
T ss_pred             CCC-EEEEECC
Confidence            997 9999863

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=99.68  E-value=1.8e-15  Score=118.86  Aligned_cols=145  Identities=14%  Similarity=0.202  Sum_probs=105.6

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCC-CcE-EEeccc--cCccccceEEccCCcEEEEEeCC-CeEEEEccC--
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-GTW-EDWHQV--GSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEE--   79 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~-g~~-~~~~~~--~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~--   79 (173)
                      +..|.++++++ +|.||+++ .+++|++++++ |.. ..+...  ...+. +|+++++|+.||+++.. +.|++++.+  
T Consensus       227 ~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~-~ia~dpdG~~LYvad~~~~~I~~~~~d~~  305 (433)
T 4hw6_A          227 ARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNF-HIVWHPTGDWAYIIYNGKHCIYRVDYNRE  305 (433)
T ss_dssp             CSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCE-EEEECTTSSEEEEEETTTTEEEEEEBCTT
T ss_pred             cCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcc-cEEEeCCCCEEEEEeCCCCEEEEEeCCCC
Confidence            67899999999 89999999 67899999986 665 333222  33566 89999999855999976 568887743  


Q ss_pred             -C-c---EEEEecc--C--------CccccCCccEEE---------cCCCcEEEEeCcCCcCcccceeeecccCCCceEE
Q 030700           80 -G-V---TVLVSQF--N--------GSQLRFANDVIE---------ASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (173)
Q Consensus        80 -g-~---~~~~~~~--~--------~~~~~~~~~l~~---------~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~  135 (173)
                       + +   ..++...  .        ...+..|.+|++         +++|+|||+|..                 +++|.
T Consensus       306 ~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~-----------------n~~I~  368 (433)
T 4hw6_A          306 TGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRD-----------------SHTVR  368 (433)
T ss_dssp             TCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETT-----------------TTEEE
T ss_pred             CcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECC-----------------CCEEE
Confidence             3 2   2333220  1        124678999999         889999999854                 35888


Q ss_pred             EEcCCCCeeEEeec------------------cccCcceEEEccCCCEEEEEecC
Q 030700          136 KYDPSTNQTSLVLD------------------GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       136 ~~d~~~~~~~~~~~------------------~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +++++ |.+..++.                  .+..|.||+++|....|||+|+.
T Consensus       369 ~~~~~-G~v~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~  422 (433)
T 4hw6_A          369 VLTPE-GRVTTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCD  422 (433)
T ss_dssp             EECTT-SEEEEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGG
T ss_pred             EECCC-CCEEEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCC
Confidence            88885 56555542                  15679999999555579999974

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.68  E-value=3.9e-15  Score=108.64  Aligned_cols=138  Identities=17%  Similarity=0.298  Sum_probs=100.4

Q ss_pred             CcceEEEcCCCCEEE-Ec-CCCeEEEEcCCCcEEEec--cccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEE
Q 030700           11 HPEDVSVDGNGVLYT-AT-GDGWIKRMHPNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~-~~-~~~~i~~~~~~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~   85 (173)
                      .|.+++++++|+||+ ++ .++.|++++.++......  .....|. +++++++|++ |+++...++.+++.++ .....
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~l-~v~~~~~~i~~~d~~~~~~~~~  102 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTV-YVTDFNNRVVTLAAGSNNQTVL  102 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCC-CEEECTTCCE-EEEETTTEEEEECTTCSCCEEC
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcc-eeEECCCCCE-EEEcCCCEEEEEeCCCceEeee
Confidence            999999999999999 86 678899998765433322  2235799 9999999997 9998756788888776 32221


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccCcceEEEccCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSEDER  164 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~p~gi~~~~dg~  164 (173)
                      .   ...+..|.+|+++++|++|+++..                 .++|++++..+...... ...+..|++|+++++|+
T Consensus       103 ~---~~~~~~p~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~  162 (270)
T 1rwi_B          103 P---FDGLNYPEGLAVDTQGAVYVADRG-----------------NNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGN  162 (270)
T ss_dssp             C---CCSCSSEEEEEECTTCCEEEEEGG-----------------GTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCC
T ss_pred             e---cCCcCCCcceEECCCCCEEEEECC-----------------CCEEEEEECCCceeEeeccccCCCceeEEEeCCCC
Confidence            1   112357899999999999999642                 36899998765443322 23457899999999997


Q ss_pred             EEEEEec
Q 030700          165 FLVVCES  171 (173)
Q Consensus       165 ~lyv~~~  171 (173)
                       +||++.
T Consensus       163 -l~v~~~  168 (270)
T 1rwi_B          163 -VYVTDT  168 (270)
T ss_dssp             -EEEEEG
T ss_pred             -EEEEEC
Confidence             999875

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.67  E-value=4.3e-15  Score=124.05  Aligned_cols=146  Identities=16%  Similarity=0.189  Sum_probs=108.0

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEE-ec-cccCccccceEEccCCcEEEEEeCC--CeEEEE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWED-WH-QVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKV   76 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~-~~-~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~   76 (173)
                      ++....+..|++||+|. .++||+++ ..++|.+++.+|+..+ +. .....|. ||++++.+..|||++.+  ..|.++
T Consensus       464 ~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~-gIaVDp~~g~LYwtD~g~~~~I~~~  542 (791)
T 3m0c_C          464 TVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKG  542 (791)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEE
T ss_pred             EEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcc-eEEEecCCCCEEEecCCCCCeEEEE
Confidence            34444588999999998 55999999 6789999999886433 22 3456799 99999874444999976  468888


Q ss_pred             ccCC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---c
Q 030700           77 SEEG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---G  150 (173)
Q Consensus        77 ~~~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~  150 (173)
                      +.+|  ...+..    ..+.+|++|++|+ +|+|||+|..                 ..+|+++++++...+.+..   .
T Consensus       543 ~~dG~~~~~lv~----~~l~~P~GLavD~~~~~LYwaD~~-----------------~~~I~~~d~dG~~~~~v~~~~~~  601 (791)
T 3m0c_C          543 GLNGVDIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKR  601 (791)
T ss_dssp             ETTSCCEEEEEC----SSCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTT
T ss_pred             ecCCCceEEEEe----CCCCCceEEEEecCCCeEEEEeCC-----------------CCcEEEEecCCCceEEEecCCCc
Confidence            8888  334432    2246899999996 5789999854                 2589999998666555554   2


Q ss_pred             ccCcceEEEccCCCEEEEEecC
Q 030700          151 LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +..|.+|++  +++.|||+|..
T Consensus       602 l~~P~glav--~~~~lYwtD~~  621 (791)
T 3m0c_C          602 LAHPFSLAV--FEDKVFWTDII  621 (791)
T ss_dssp             TSSEEEEEE--ETTEEEEEETT
T ss_pred             cCCCCEEEE--eCCEEEEEECC
Confidence            667778877  44589999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.67  E-value=7.8e-15  Score=110.97  Aligned_cols=148  Identities=14%  Similarity=0.091  Sum_probs=105.4

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccC------ccccceEEccCCcEEEEEeC--CCeEEEEcc
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGS------QSLLGLTTTKENNVIIVCDS--QQGLLKVSE   78 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~------~p~~gl~~~~~g~l~~v~~~--~~~i~~~~~   78 (173)
                      ...|++++++++|++|+++ .++.|.++|+. +++....+.+.      .|. +|++ .++++ |+++.  .+.+..+|.
T Consensus        83 ~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~-~i~~-~~~~l-yv~~~~~~~~v~viD~  159 (328)
T 3dsm_A           83 FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTE-QMVQ-YGKYV-YVNCWSYQNRILKIDT  159 (328)
T ss_dssp             CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCC-CEEE-ETTEE-EEEECTTCCEEEEEET
T ss_pred             CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcc-eEEE-ECCEE-EEEcCCCCCEEEEEEC
Confidence            4789999998888999999 78899999964 55554444445      899 9999 56666 99985  456888885


Q ss_pred             -CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--ccCc
Q 030700           79 -EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFA  154 (173)
Q Consensus        79 -~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p  154 (173)
                       ++ .......  +   ..|++++++++|++|+++....... ++      ....++|+++|++++++......  ...|
T Consensus       160 ~t~~~~~~i~~--g---~~p~~i~~~~dG~l~v~~~~~~~~~-~~------~~~~~~v~~id~~t~~v~~~~~~~~g~~p  227 (328)
T 3dsm_A          160 ETDKVVDELTI--G---IQPTSLVMDKYNKMWTITDGGYEGS-PY------GYEAPSLYRIDAETFTVEKQFKFKLGDWP  227 (328)
T ss_dssp             TTTEEEEEEEC--S---SCBCCCEECTTSEEEEEBCCBCTTC-SS------CBCCCEEEEEETTTTEEEEEEECCTTCCC
T ss_pred             CCCeEEEEEEc--C---CCccceEEcCCCCEEEEECCCccCC-cc------ccCCceEEEEECCCCeEEEEEecCCCCCc
Confidence             45 3222221  2   4689999999999999875310000 00      01136899999998876543321  3479


Q ss_pred             ceEEEccCCCEEEEEec
Q 030700          155 NGVALSEDERFLVVCES  171 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~  171 (173)
                      ++|+++||+++||+++.
T Consensus       228 ~~la~~~d~~~lyv~~~  244 (328)
T 3dsm_A          228 SEVQLNGTRDTLYWINN  244 (328)
T ss_dssp             EEEEECTTSCEEEEESS
T ss_pred             eeEEEecCCCEEEEEcc
Confidence            99999999999999864

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.66  E-value=1e-14  Score=110.94  Aligned_cols=153  Identities=15%  Similarity=0.198  Sum_probs=103.9

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcC---CC--eEEEEcCCCcEEEecc-------ccCccccceEEccCCcEEEEEeC
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATG---DG--WIKRMHPNGTWEDWHQ-------VGSQSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~---~~--~i~~~~~~g~~~~~~~-------~~~~p~~gl~~~~~g~l~~v~~~   69 (173)
                      +++.+.. ..|++++++++|++|++..   ++  +|+.++ +|++..+..       ....|. +++++++|++ |+++.
T Consensus        10 ~~v~~~~-~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~-~g~~~~~p~~~~~~~~~~~~p~-gv~~d~~g~L-~v~D~   85 (343)
T 2qe8_A           10 EVVAELS-LAPGNITLTPDGRLFLSLHQFYQPEMQVAELT-QDGLIPFPPQSGNAIITFDTVL-GIKSDGNGIV-WMLDN   85 (343)
T ss_dssp             EEEEEES-SCEEEEEECTTSCEEEEECGGGCCSCSEEEEE-TTEEEESCCCCSSCCCCCSCEE-EEEECSSSEE-EEEEC
T ss_pred             EEEEEcC-CCcceEEECCCCCEEEEeCCCCCCceEEEEEC-CCCeecCCCcccCcccceeEee-EEEEcCCCcE-EEEcC
Confidence            3344432 6899999999999999852   23  789888 777665421       134799 9999999998 99986


Q ss_pred             C------CeEEEEcc-CC-cEEEEec--cCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEc
Q 030700           70 Q------QGLLKVSE-EG-VTVLVSQ--FNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD  138 (173)
Q Consensus        70 ~------~~i~~~~~-~g-~~~~~~~--~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d  138 (173)
                      +      ..|++++. +| +......  ....+...+++++++++ |.+|+++.+..              ..+.|+++|
T Consensus        86 g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~--------------~~~~i~v~d  151 (343)
T 2qe8_A           86 GNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPD--------------DKAALIRVD  151 (343)
T ss_dssp             HHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSG--------------GGCEEEEEE
T ss_pred             CCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccC--------------CCCeEEEEE
Confidence            5      57888885 56 3322221  11223457899999975 68999985210              124666777


Q ss_pred             CCCCeeEEeecc------------------------------ccCcceEEEccCCCEEEEEecC
Q 030700          139 PSTNQTSLVLDG------------------------------LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       139 ~~~~~~~~~~~~------------------------------~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +++++...+..+                              ...|+||+|+|||++||++++.
T Consensus       152 ~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~  215 (343)
T 2qe8_A          152 LQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMH  215 (343)
T ss_dssp             TTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESS
T ss_pred             CCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCC
Confidence            665544333211                              1247999999999999998753

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.66  E-value=1.1e-14  Score=119.07  Aligned_cols=143  Identities=17%  Similarity=0.161  Sum_probs=111.2

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEE-e-ccccCccccceEEcc-CCcEEEEEeCC--CeEEE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWED-W-HQVGSQSLLGLTTTK-ENNVIIVCDSQ--QGLLK   75 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~-~-~~~~~~p~~gl~~~~-~g~l~~v~~~~--~~i~~   75 (173)
                      ++....+..|+|||+|. .++||+++ ..++|.+.+.+|+..+ + ......|. +|++|| +|.+ |+++.+  ..|.+
T Consensus        73 ~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~-~iavdp~~G~l-Y~tD~g~~~~I~r  150 (628)
T 4a0p_A           73 HVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPR-ALALDPAEGFM-YWTEWGGKPKIDR  150 (628)
T ss_dssp             EEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEE-EEEEETTTTEE-EEEECSSSCEEEE
T ss_pred             EEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcc-cEEEccCCCeE-EEeCCCCCCEEEE
Confidence            34444478899999997 67999999 6788999998886332 2 24566899 999998 4555 999965  47888


Q ss_pred             EccCC--cEEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc
Q 030700           76 VSEEG--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY  152 (173)
Q Consensus        76 ~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  152 (173)
                      .+.+|  .+.+..     .+..|++|++|++ ++|||+|..                 .++|++++.++...+.+...+.
T Consensus       151 ~~~dG~~~~~l~~-----~~~~P~GlalD~~~~~LY~aD~~-----------------~~~I~~~d~dG~~~~v~~~~l~  208 (628)
T 4a0p_A          151 AAMDGSERTTLVP-----NVGRANGLTIDYAKRRLYWTDLD-----------------TNLIESSNMLGLNREVIADDLP  208 (628)
T ss_dssp             EETTSCSCEEEEC-----SCSSEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECCS
T ss_pred             EeCCCCceEEEEC-----CCCCcceEEEccccCEEEEEECC-----------------CCEEEEEcCCCCceEEeeccCC
Confidence            88888  555543     2468999999995 679999854                 3689999998766666777789


Q ss_pred             CcceEEEccCCCEEEEEec
Q 030700          153 FANGVALSEDERFLVVCES  171 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~~~  171 (173)
                      .|.||++..  ..|||+|.
T Consensus       209 ~P~glav~~--~~ly~tD~  225 (628)
T 4a0p_A          209 HPFGLTQYQ--DYIYWTDW  225 (628)
T ss_dssp             CEEEEEEET--TEEEEEET
T ss_pred             CceEEEEEC--CEEEEecC
Confidence            999999965  47999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.66  E-value=5.2e-16  Score=128.35  Aligned_cols=142  Identities=13%  Similarity=0.116  Sum_probs=104.2

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCC----c-EEEec-cccCccccceEEcc-CCcEEEEEeCC-CeEEEEcc
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG----T-WEDWH-QVGSQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSE   78 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g----~-~~~~~-~~~~~p~~gl~~~~-~g~l~~v~~~~-~~i~~~~~   78 (173)
                      +..|.+|++++ ++.||+++ ..++|++++.++    . ...+. .....|. ||++++ .+++ |+++.. +.|.+++.
T Consensus       405 ~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~-glavD~~~g~L-Y~tD~~~~~I~v~d~  482 (699)
T 1n7d_A          405 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNI-YWTDSVLGTVSVADT  482 (699)
T ss_dssp             CTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CC-CEECCCSSSBC-EECCTTTSCEEEEBS
T ss_pred             CcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcc-eEEEEeeCCcE-EEEeccCCeEEEEec
Confidence            67899999998 67899999 668899999775    2 22222 2345799 999995 5566 999876 46888888


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccCc
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFA  154 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~p  154 (173)
                      +|  ...+..    ..+..|++|+++| .|.|||++..                ..++|+++++++...+.+ ...+..|
T Consensus       483 dg~~~~~l~~----~~~~~P~giavDp~~g~ly~td~~----------------~~~~I~~~~~dG~~~~~l~~~~l~~P  542 (699)
T 1n7d_A          483 KGVKRKTLFR----EQGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTENIQWP  542 (699)
T ss_dssp             SSCCEEEECC----CSSCCCCCEECCSSSSCCEECCCS----------------SSCCEEBCCSSSCCCCEESCSSCSSC
T ss_pred             CCCceEEEEe----CCCCCcceEEEccCCCcEEEcccC----------------CCCeEEEEeCCCCCeeEEEeCCCCCc
Confidence            77  343332    1246899999999 4689999743                125899999875444333 3458899


Q ss_pred             ceEEEccCCCEEEEEecC
Q 030700          155 NGVALSEDERFLVVCESW  172 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~~  172 (173)
                      +||+|+|+++.|||+|+.
T Consensus       543 nGlavd~~~~~LY~aD~~  560 (699)
T 1n7d_A          543 NGITLDLLSGRLYWVDSK  560 (699)
T ss_dssp             CCEEECTTTCCEEEEETT
T ss_pred             cEEEEeccCCEEEEEecC
Confidence            999999998899999974

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.63  E-value=2.7e-14  Score=106.22  Aligned_cols=146  Identities=13%  Similarity=0.124  Sum_probs=106.6

Q ss_pred             cCCcceEEEcCCCCEEEEcC-C---------------CeEEEEcCCCcEEEeccccCccccceEEc----cCCcEEEEEe
Q 030700            9 VNHPEDVSVDGNGVLYTATG-D---------------GWIKRMHPNGTWEDWHQVGSQSLLGLTTT----KENNVIIVCD   68 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~-~---------------~~i~~~~~~g~~~~~~~~~~~p~~gl~~~----~~g~l~~v~~   68 (173)
                      ...|.+++++++|++|+++. +               +.|++++++++...+......|+ +++++    ++|+.+|+++
T Consensus       116 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~-~i~~~~~~d~dg~~l~v~~  194 (314)
T 1pjx_A          116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             ccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCCCCEEEeccCCCCcc-eEEEecccCCCCCEEEEEE
Confidence            35689999999999999883 2               68999998887766555556788 99999    9997669988


Q ss_pred             CC-CeEEEEcc--CC-cEE--EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           69 SQ-QGLLKVSE--EG-VTV--LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        69 ~~-~~i~~~~~--~g-~~~--~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      .. +++.+++.  +| ...  ......+..+..|++++++++|++|+++..                 .+.|+++|++++
T Consensus       195 ~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~-----------------~~~i~~~d~~~g  257 (314)
T 1pjx_A          195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCB
T ss_pred             CCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcC-----------------CCEEEEEcCCCC
Confidence            65 56777773  45 221  111222211146899999999999999632                 268999999855


Q ss_pred             e-eEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          143 Q-TSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       143 ~-~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      + ...+......|.++++++|+++||+++..
T Consensus       258 ~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~  288 (314)
T 1pjx_A          258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             cEeEEEeCCCCCceeEEECCCCCEEEEEeCC
Confidence            4 33343445778999999999999998753

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.63  E-value=1.3e-14  Score=115.16  Aligned_cols=145  Identities=12%  Similarity=0.112  Sum_probs=105.2

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCC--------CcE------------EEe--ccccCccccceEEccCCcEE
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN--------GTW------------EDW--HQVGSQSLLGLTTTKENNVI   64 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~--------g~~------------~~~--~~~~~~p~~gl~~~~~g~l~   64 (173)
                      +.+|.+++++| ++.||+++ .+++|++++++        +..            ..+  .....+|. +|+++++|+.|
T Consensus       246 ~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~-~ia~~p~G~~l  324 (496)
T 3kya_A          246 YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEF-QIFIHPTGKYA  324 (496)
T ss_dssp             ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCE-EEEECTTSSEE
T ss_pred             CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCce-EEEEcCCCCEE
Confidence            57899999999 78999999 77889999965        433            121  12245789 99999999966


Q ss_pred             EEEeCC-CeEEEEccCC-c------EEEEec--c----CC----ccccCCc-cEEEc-------CCCcEEEEeCcCCcCc
Q 030700           65 IVCDSQ-QGLLKVSEEG-V------TVLVSQ--F----NG----SQLRFAN-DVIEA-------SDGSLYFTVSSTKFTP  118 (173)
Q Consensus        65 ~v~~~~-~~i~~~~~~g-~------~~~~~~--~----~~----~~~~~~~-~l~~~-------~dG~~~v~~~~~~~~~  118 (173)
                      |+++.. +.|++++.++ .      ..++..  .    +|    ..++.|. +++++       ++|.|||+|..     
T Consensus       325 YvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~-----  399 (496)
T 3kya_A          325 YFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRL-----  399 (496)
T ss_dssp             EEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGG-----
T ss_pred             EEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECC-----
Confidence            999977 5788877554 2      334432  1    11    2467899 77887       67899999854     


Q ss_pred             ccceeeecccCCCceEEEEcCCCCeeEEeec------------------------cccCcceEEEccCCCEEEEEecC
Q 030700          119 AEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD------------------------GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       119 ~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------------------------~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                                  +.+|.+++++ |.+..++.                        .+..|.||+++++...|||+|+.
T Consensus       400 ------------N~rIr~i~~~-G~v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~  464 (496)
T 3kya_A          400 ------------NFCVRKVTPE-GIVSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQV  464 (496)
T ss_dssp             ------------GTEEEEECTT-CBEEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETT
T ss_pred             ------------CCEEEEEeCC-CCEEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCC
Confidence                        3588888875 55555532                        15679999999985579999974

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.63  E-value=8.7e-14  Score=102.48  Aligned_cols=140  Identities=13%  Similarity=0.156  Sum_probs=107.5

Q ss_pred             ccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEecc--ccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-cE
Q 030700            8 IVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VT   82 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~--~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-~~   82 (173)
                      ....|.+++++++|.+|+++ .++.|.+++++++...+..  ....|. +++++++|++ |+++.. .++.+++.+| ..
T Consensus        18 ~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~v~~~d~~g~~~   95 (300)
T 2qc5_A           18 PDSGPYGITSSEDGKVWFTQHKANKISSLDQSGRIKEFEVPTPDAKVM-CLIVSSLGDI-WFTENGANKIGKLSKKGGFT   95 (300)
T ss_dssp             TTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCE-EEEETTTTEEEEECTTSCEE
T ss_pred             CCCCcceeeECCCCCEEEEcCCCCeEEEECCCCceEEEECCCCCCcce-eEEECCCCCE-EEEecCCCeEEEECCCCCeE
Confidence            36789999999999999998 5789999998877655422  235789 9999999998 888864 5688888778 54


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALS  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~  160 (173)
                      .+....   ....|.+++++++|++|+++..                 .+.|++++++ ++.....  .....|++|+++
T Consensus        96 ~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d  154 (300)
T 2qc5_A           96 EYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------------GDRIGKLTAD-GTIYEYDLPNKGSYPAFITLG  154 (300)
T ss_dssp             EEECSS---TTCCEEEEEECSTTCEEEEETT-----------------TTEEEEECTT-SCEEEEECSSTTCCEEEEEEC
T ss_pred             EecCCC---CCCCCccceECCCCCEEEEccC-----------------CCeEEEECCC-CCEEEccCCCCCCCceeEEEC
Confidence            433211   1257899999999999999642                 3689999998 6655432  236789999999


Q ss_pred             cCCCEEEEEec
Q 030700          161 EDERFLVVCES  171 (173)
Q Consensus       161 ~dg~~lyv~~~  171 (173)
                      ++|+ ||+++.
T Consensus       155 ~~g~-l~v~~~  164 (300)
T 2qc5_A          155 SDNA-LWFTEN  164 (300)
T ss_dssp             TTSS-EEEEET
T ss_pred             CCCC-EEEEec
Confidence            9998 899874

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=99.63  E-value=3.2e-14  Score=107.12  Aligned_cols=148  Identities=16%  Similarity=0.175  Sum_probs=103.1

Q ss_pred             ccCCcceEEEcC-CCCEEEEcCC------------------CeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEE
Q 030700            8 IVNHPEDVSVDG-NGVLYTATGD------------------GWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVC   67 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~~~------------------~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~   67 (173)
                      .+..|.++++++ +|+||+++..                  ++|++++++ ++...+......|+ ||+++++|+.+|++
T Consensus       124 ~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~~p~-gia~~~dg~~lyv~  202 (322)
T 2fp8_A          124 PFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELHVPG-GAEVSADSSFVLVA  202 (322)
T ss_dssp             ECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEESCCC-EEEECTTSSEEEEE
T ss_pred             cccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCccCc-ceEECCCCCEEEEE
Confidence            356799999999 9999998832                  679999975 55555555567899 99999999866999


Q ss_pred             eCC-CeEEEEccCC-----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           68 DSQ-QGLLKVSEEG-----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        68 ~~~-~~i~~~~~~g-----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                      +.. ++|.+++.++     .+.+.. ..    . |++|++|++|++|+++........       .....++|+++|+++
T Consensus       203 d~~~~~I~~~~~~~~~~~~~~~~~~-~~----g-P~gi~~d~~G~l~va~~~~~~~~~-------~~~~~~~v~~~d~~G  269 (322)
T 2fp8_A          203 EFLSHQIVKYWLEGPKKGTAEVLVK-IP----N-PGNIKRNADGHFWVSSSEELDGNM-------HGRVDPKGIKFDEFG  269 (322)
T ss_dssp             EGGGTEEEEEESSSTTTTCEEEEEE-CS----S-EEEEEECTTSCEEEEEEEETTSST-------TSCEEEEEEEECTTS
T ss_pred             eCCCCeEEEEECCCCcCCccceEEe-CC----C-CCCeEECCCCCEEEEecCcccccc-------cCCCccEEEEECCCC
Confidence            876 5788887543     334432 21    2 999999999999999743111000       001236899999984


Q ss_pred             CeeEEeecc----ccCcceEEEccCCCEEEEEec
Q 030700          142 NQTSLVLDG----LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       142 ~~~~~~~~~----~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ..+..+...    +..|.++++. + ..|||++.
T Consensus       270 ~~~~~~~~~~g~~~~~~~~~~~~-~-g~L~v~~~  301 (322)
T 2fp8_A          270 NILEVIPLPPPFAGEHFEQIQEH-D-GLLYIGTL  301 (322)
T ss_dssp             CEEEEEECCTTTTTSCCCEEEEE-T-TEEEEECS
T ss_pred             CEEEEEECCCCCccccceEEEEe-C-CEEEEeec
Confidence            444444432    4677888873 4 47999865

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.62  E-value=1.1e-13  Score=102.03  Aligned_cols=139  Identities=13%  Similarity=0.185  Sum_probs=106.6

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEec--cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-cEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VTV   83 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-~~~   83 (173)
                      ...|.+++++++|.+|+++ .++.|++++++|+...+.  .....|. +++++++|++ |+++.. .++++++.++ ...
T Consensus       103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~d~~g~l-~v~~~~~~~i~~~~~~g~~~~  180 (300)
T 2qc5_A          103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPA-FITLGSDNAL-WFTENQNNSIGRITNTGKLEE  180 (300)
T ss_dssp             TCCEEEEEECSTTCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSSE-EEEETTTTEEEEECTTCCEEE
T ss_pred             CCCCccceECCCCCEEEEccCCCeEEEECCCCCEEEccCCCCCCCce-eEEECCCCCE-EEEecCCCeEEEECCCCcEEE
Confidence            3679999999999999988 478999999888766542  2345789 9999999997 998864 5788888877 544


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~  161 (173)
                      +...   .....|.+++++++|++|+++..                 .++|+++++. ++.....  .....|.+|++++
T Consensus       181 ~~~~---~~~~~~~~i~~d~~g~l~v~~~~-----------------~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~  239 (300)
T 2qc5_A          181 YPLP---TNAAAPVGITSGNDGALWFVEIM-----------------GNKIGRITTT-GEISEYDIPTPNARPHAITAGK  239 (300)
T ss_dssp             EECS---STTCCEEEEEECTTSSEEEEETT-----------------TTEEEEECTT-CCEEEEECSSTTCCEEEEEECS
T ss_pred             eeCC---CCCCCcceEEECCCCCEEEEccC-----------------CCEEEEEcCC-CcEEEEECCCCCCCceEEEECC
Confidence            3211   22357899999999999999643                 2589999994 5544442  2467789999999


Q ss_pred             CCCEEEEEec
Q 030700          162 DERFLVVCES  171 (173)
Q Consensus       162 dg~~lyv~~~  171 (173)
                      +|+ |||++.
T Consensus       240 ~g~-l~v~~~  248 (300)
T 2qc5_A          240 NSE-IWFTEW  248 (300)
T ss_dssp             TTC-EEEEET
T ss_pred             CCC-EEEecc
Confidence            987 999874

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.62  E-value=1.4e-13  Score=101.38  Aligned_cols=139  Identities=12%  Similarity=0.214  Sum_probs=106.0

Q ss_pred             cCCcceEEEcCCCCEEEEcC-CCeEEEEcCCCcEEEec--cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-cEE
Q 030700            9 VNHPEDVSVDGNGVLYTATG-DGWIKRMHPNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VTV   83 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-~~~   83 (173)
                      ...|.+++++++|.+|+++. ++.|++++++++...+.  .....|. +++++++|++ |++... .++++++.++ .+.
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~i~~~~~~g~~~~   91 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLDGKITEYPLPTPDAKVM-CLTISSDGEV-WFTENAANKIGRITKKGIIKE   91 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEECSSTTCCEE-EEEECTTSCE-EEEETTTTEEEEECTTSCEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCCCCeEEecCCcccCcee-eEEECCCCCE-EEeCCCCCeEEEECCCCcEEE
Confidence            57899999999999999884 68899999887765543  2345789 9999999998 888764 5688888777 544


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~p~gi~~~~  161 (173)
                      +...   .....|.+|+++++|++|+++..                 .+.|+++|+ +++......  ....|++|++++
T Consensus        92 ~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~  150 (299)
T 2z2n_A           92 YTLP---NPDSAPYGITEGPNGDIWFTEMN-----------------GNRIGRITD-DGKIREYELPNKGSYPSFITLGS  150 (299)
T ss_dssp             EECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             EeCC---CcCCCceeeEECCCCCEEEEecC-----------------CceEEEECC-CCCEEEecCCCCCCCCceEEEcC
Confidence            4321   12357899999999999998642                 368999999 465554432  356789999999


Q ss_pred             CCCEEEEEec
Q 030700          162 DERFLVVCES  171 (173)
Q Consensus       162 dg~~lyv~~~  171 (173)
                      +|+ +|+++.
T Consensus       151 ~g~-l~v~~~  159 (299)
T 2z2n_A          151 DNA-LWFTEN  159 (299)
T ss_dssp             TSC-EEEEET
T ss_pred             CCC-EEEEeC
Confidence            986 888764

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.62  E-value=9e-14  Score=102.36  Aligned_cols=139  Identities=12%  Similarity=0.220  Sum_probs=106.3

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEecc--ccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-cEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-VTV   83 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~--~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-~~~   83 (173)
                      ...|.+++++++|.+|+++ .++.|++++++++...+..  ....|. +++++++|++ |+++.. .++.+++.++ ...
T Consensus        56 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~-~i~~~~~g~l-~v~~~~~~~i~~~d~~g~~~~  133 (299)
T 2z2n_A           56 DAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEYTLPNPDSAPY-GITEGPNGDI-WFTEMNGNRIGRITDDGKIRE  133 (299)
T ss_dssp             TCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEECSSTTCCEE-EEEECTTSCE-EEEETTTTEEEEECTTCCEEE
T ss_pred             cCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEEeCCCcCCCce-eeEECCCCCE-EEEecCCceEEEECCCCCEEE
Confidence            3679999999999999988 4788999998887655432  345789 9999999998 888754 5788888877 544


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~  161 (173)
                      +...   .....|++++++++|++|+++..                 .+.|+++|+ +++.....  .....|.+|++++
T Consensus       134 ~~~~---~~~~~~~~i~~~~~g~l~v~~~~-----------------~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~  192 (299)
T 2z2n_A          134 YELP---NKGSYPSFITLGSDNALWFTENQ-----------------NNAIGRITE-SGDITEFKIPTPASGPVGITKGN  192 (299)
T ss_dssp             EECS---STTCCEEEEEECTTSCEEEEETT-----------------TTEEEEECT-TCCEEEEECSSTTCCEEEEEECT
T ss_pred             ecCC---CCCCCCceEEEcCCCCEEEEeCC-----------------CCEEEEEcC-CCcEEEeeCCCCCCcceeEEECC
Confidence            4321   12357899999999999998632                 368999999 57665542  2366789999999


Q ss_pred             CCCEEEEEec
Q 030700          162 DERFLVVCES  171 (173)
Q Consensus       162 dg~~lyv~~~  171 (173)
                      +|+ ||+++.
T Consensus       193 ~g~-l~v~~~  201 (299)
T 2z2n_A          193 DDA-LWFVEI  201 (299)
T ss_dssp             TSS-EEEEET
T ss_pred             CCC-EEEEcc
Confidence            987 888874

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.60  E-value=9.4e-14  Score=102.18  Aligned_cols=141  Identities=11%  Similarity=0.098  Sum_probs=102.0

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC---cEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---VTV   83 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---~~~   83 (173)
                      -..+++++++ +++||++. .++.++.+|. +.+...-.+.+ .|. |..+.+||+.+|+++..+.+..+|+..   ...
T Consensus        65 ~~fgeGi~~~-g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g-~~~-g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~  141 (266)
T 2iwa_A           65 SYFGEGLTLL-NEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQ-MKD-GWGLATDGKILYGSDGTSILYEIDPHTFKLIKK  141 (266)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTCSEEEEEETTTTEEEEEEECC-SSS-CCEEEECSSSEEEECSSSEEEEECTTTCCEEEE
T ss_pred             CcceEEEEEe-CCEEEEEEecCCEEEEEECCCCcEEEEEECC-CCC-eEEEEECCCEEEEECCCCeEEEEECCCCcEEEE
Confidence            3567888887 45899888 6788999996 45544333333 455 666666766559999667788899644   344


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cc----------
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GL----------  151 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~----------  151 (173)
                      +.....+.+...||++.+. +|.+|++...                 ++.|.++|++++++.....  ++          
T Consensus       142 I~Vg~~~~p~~~~nele~~-dg~lyvn~~~-----------------~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~  203 (266)
T 2iwa_A          142 HNVKYNGHRVIRLNELEYI-NGEVWANIWQ-----------------TDCIARISAKDGTLLGWILLPNLRKKLIDEGFR  203 (266)
T ss_dssp             EECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCT
T ss_pred             EEECCCCcccccceeEEEE-CCEEEEecCC-----------------CCeEEEEECCCCcEEEEEECCCccccccccccc
Confidence            4333345566789999998 8899998632                 3699999999998755543  22          


Q ss_pred             --cCcceEEEccCCCEEEEEe
Q 030700          152 --YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 --~~p~gi~~~~dg~~lyv~~  170 (173)
                        ..||||+++|+++++||+.
T Consensus       204 ~~~v~nGIa~~~~~~~lfVTg  224 (266)
T 2iwa_A          204 DIDVLNGIAWDQENKRIFVTG  224 (266)
T ss_dssp             TCCCEEEEEEETTTTEEEEEE
T ss_pred             ccCceEEEEEcCCCCEEEEEC
Confidence              3679999999999999986

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=1.3e-13  Score=103.55  Aligned_cols=144  Identities=16%  Similarity=0.179  Sum_probs=102.4

Q ss_pred             CCcceEEEcCCCCEEEEcC-------CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc--
Q 030700           10 NHPEDVSVDGNGVLYTATG-------DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE--   78 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~-------~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~--   78 (173)
                      ..|.+++++++|++|+++.       .+.|+++++++ +...+......++ +++++++|+.+|+++.. +.+.+++.  
T Consensus       135 ~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~i~~~~dg~~l~v~~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          135 YCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN-GIALSTDEKVLWVTETTANRLHRIALED  213 (333)
T ss_dssp             CCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEE-EEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             CcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCccc-ceEECCCCCEEEEEeCCCCeEEEEEecC
Confidence            4688999999999999874       36899999765 5555444455688 99999999865888754 56777774  


Q ss_pred             CC--cEEEEec-c-CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc--
Q 030700           79 EG--VTVLVSQ-F-NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY--  152 (173)
Q Consensus        79 ~g--~~~~~~~-~-~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~--  152 (173)
                      +|  ...+... . .......|++++++++|++|+++..                 +++|+++|+++..+..+.....  
T Consensus       214 ~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~-----------------~~~v~~~d~~g~~~~~~~~~~~~~  276 (333)
T 2dg1_A          214 DGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----------------QGRVLVFNKRGYPIGQILIPGRDE  276 (333)
T ss_dssp             TSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTSCEEEEEECTTGGG
T ss_pred             CCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcC-----------------CCEEEEECCCCCEEEEEEcCCCcc
Confidence            45  3322111 0 0011147899999999999998632                 3689999997544444443322  


Q ss_pred             ----CcceEEEccCCCEEEEEec
Q 030700          153 ----FANGVALSEDERFLVVCES  171 (173)
Q Consensus       153 ----~p~gi~~~~dg~~lyv~~~  171 (173)
                          .|.+++|+||++.||++..
T Consensus       277 g~~~~~~~~~~~~dg~~L~v~~~  299 (333)
T 2dg1_A          277 GHMLRSTHPQFIPGTNQLIICSN  299 (333)
T ss_dssp             TCSCBCCEEEECTTSCEEEEEEE
T ss_pred             ccccCcceEEECCCCCEEEEEeC
Confidence                6899999999999999764

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.58  E-value=2.2e-14  Score=118.69  Aligned_cols=141  Identities=17%  Similarity=0.209  Sum_probs=103.3

Q ss_pred             ccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE-Eec-cccCccccceEEccCCcEEEEEeCC--CeEEEEccCC-
Q 030700            8 IVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE-DWH-QVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG-   80 (173)
Q Consensus         8 ~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~-~~~-~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g-   80 (173)
                      .+..|++|++++ +++||+++ ..++|++++++|+.. .+. .....|. +|++++.+..||+++.+  ..|.+++.+| 
T Consensus       451 ~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~-giavDp~~g~ly~td~~~~~~I~~~~~dG~  529 (699)
T 1n7d_A          451 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGGLNGV  529 (699)
T ss_dssp             CC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCC-CEECCSSSSCCEECCCSSSCCEEBCCSSSC
T ss_pred             CCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcc-eEEEccCCCcEEEcccCCCCeEEEEeCCCC
Confidence            467899999996 77999998 678899999888643 332 3356899 99999864444999865  3677777777 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---cccCcc
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---GLYFAN  155 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~~~~p~  155 (173)
                       .+.+..    ..+..|++|+++++ ++|||+|..                 .++|+++++++...+.+..   .+..|.
T Consensus       530 ~~~~l~~----~~l~~PnGlavd~~~~~LY~aD~~-----------------~~~I~~~d~dG~~~~~~~~~~~~~~~P~  588 (699)
T 1n7d_A          530 DIYSLVT----ENIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRLAHPF  588 (699)
T ss_dssp             CCCEESC----SSCSSCCCEEECTTTCCEEEEETT-----------------TTEEEEECSSSSCCEEECCCSSSCSSCC
T ss_pred             CeeEEEe----CCCCCccEEEEeccCCEEEEEecC-----------------CCeEEEEccCCCceEEEEecCCcCCCce
Confidence             333322    23578999999986 679999854                 3689999998655555553   368899


Q ss_pred             eEEEccCCCEEEEEecC
Q 030700          156 GVALSEDERFLVVCESW  172 (173)
Q Consensus       156 gi~~~~dg~~lyv~~~~  172 (173)
                      ||++..+  .|||++..
T Consensus       589 glavd~~--~lywtd~~  603 (699)
T 1n7d_A          589 SLAVFED--KVFWTDII  603 (699)
T ss_dssp             CCEEETT--EEEEECST
T ss_pred             EeEEECC--EEEEEeCC
Confidence            9999654  79999853

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=1.5e-13  Score=108.96  Aligned_cols=143  Identities=11%  Similarity=0.174  Sum_probs=104.0

Q ss_pred             CCccCCcceEEEcC--CCCEEEEc-CCCeEEEEcCCC-cEEEecccc----CccccceEE-------ccCCcEEEEEeCC
Q 030700            6 EGIVNHPEDVSVDG--NGVLYTAT-GDGWIKRMHPNG-TWEDWHQVG----SQSLLGLTT-------TKENNVIIVCDSQ   70 (173)
Q Consensus         6 ~~~~~~p~~l~~~~--~g~l~~~~-~~~~i~~~~~~g-~~~~~~~~~----~~p~~gl~~-------~~~g~l~~v~~~~   70 (173)
                      ...+..|.+|++||  +++||+++ ..++|+++|.++ .+..+....    ..|. +|++       +++|+.||+++..
T Consensus       135 ~~~~~~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~-~ia~~~~~~~~d~~G~~lyvad~~  213 (496)
T 3kya_A          135 CCGFSDNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIR-SIAFNKKIEGYADEAEYMIVAIDY  213 (496)
T ss_dssp             CBCCCSEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEE-EEEECCCBTTTBCTTCEEEEEECC
T ss_pred             ccccCCCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCc-EEEEeecccccCCCCCEEEEEeCC
Confidence            34467899999998  47899998 457899999655 555543332    3589 9999       9999855999876


Q ss_pred             C-------eEEEEc--cCC-c------EEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCce
Q 030700           71 Q-------GLLKVS--EEG-V------TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGV  133 (173)
Q Consensus        71 ~-------~i~~~~--~~g-~------~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~  133 (173)
                      .       .++.++  .+| +      ..+.      .+.+|++++++| +|.||+++..                 .++
T Consensus       214 ~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~------~~~~p~giavdp~~g~LYvtd~~-----------------~g~  270 (496)
T 3kya_A          214 DGKGDESPSVYIIKRNADGTFDDRSDIQLIA------AYKQCNGATIHPINGELYFNSYE-----------------KGQ  270 (496)
T ss_dssp             CTTGGGEEEEEEEECCTTSCCSTTSCEEEEE------EESCCCCEEECTTTCCEEEEETT-----------------TTE
T ss_pred             CCCcccCceEEEEecCCCCceeecccceeec------cCCCceEEEEcCCCCeEEEEECC-----------------CCE
Confidence            4       266665  345 3      2332      235899999999 6789999754                 368


Q ss_pred             EEEEcCC-------CCee------------EEee--ccccCcceEEEccCCCEEEEEecC
Q 030700          134 LLKYDPS-------TNQT------------SLVL--DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       134 v~~~d~~-------~~~~------------~~~~--~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      |+++|++       ++..            ..+.  .....|.+|+|+|+|++|||+|+.
T Consensus       271 V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~  330 (496)
T 3kya_A          271 VFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVIN  330 (496)
T ss_dssp             EEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETT
T ss_pred             EEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCC
Confidence            9999987       5543            1222  224668999999999999999975

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.55  E-value=4e-13  Score=101.45  Aligned_cols=141  Identities=17%  Similarity=0.178  Sum_probs=103.0

Q ss_pred             CCcceEEEcCCCCEEEEcC-------CCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc---
Q 030700           10 NHPEDVSVDGNGVLYTATG-------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE---   78 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~-------~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~---   78 (173)
                      ..+.+++++++|++|+++.       .+.|++++ +|+...+......++ +++++++|+.+|+++.. ..|++++.   
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~-~i~~s~dg~~lyv~~~~~~~I~~~d~~~~  211 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPN-SICFSPDGTTGYFVDTKVNRLMRVPLDAR  211 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEE-EEEECTTSCEEEEEETTTCEEEEEEBCTT
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccC-CeEEcCCCCEEEEEECCCCEEEEEEcccc
Confidence            3578899999999998773       36899999 777666545456788 99999999877998865 46777773   


Q ss_pred             CC-c----EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccC
Q 030700           79 EG-V----TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYF  153 (173)
Q Consensus        79 ~g-~----~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~  153 (173)
                      +| .    +.+.. ... ....|+++++|++|++|+++..                 .++|+++++++..+..+......
T Consensus       212 ~Gl~~~~~~~~~~-~~~-~~~~p~gi~~d~~G~lwva~~~-----------------~~~v~~~d~~g~~~~~i~~~~~~  272 (326)
T 2ghs_A          212 TGLPTGKAEVFID-STG-IKGGMDGSVCDAEGHIWNARWG-----------------EGAVDRYDTDGNHIARYEVPGKQ  272 (326)
T ss_dssp             TCCBSSCCEEEEE-CTT-SSSEEEEEEECTTSCEEEEEET-----------------TTEEEEECTTCCEEEEEECSCSB
T ss_pred             cCCcccCceEEEE-CCC-CCCCCCeeEECCCCCEEEEEeC-----------------CCEEEEECCCCCEEEEEECCCCC
Confidence            34 1    22322 111 1246899999999999998532                 26899999964444445444556


Q ss_pred             cceEEEc-cCCCEEEEEec
Q 030700          154 ANGVALS-EDERFLVVCES  171 (173)
Q Consensus       154 p~gi~~~-~dg~~lyv~~~  171 (173)
                      |.+++|+ +|++.|||+..
T Consensus       273 ~~~~af~g~d~~~L~vt~~  291 (326)
T 2ghs_A          273 TTCPAFIGPDASRLLVTSA  291 (326)
T ss_dssp             EEEEEEESTTSCEEEEEEB
T ss_pred             cEEEEEecCCCCEEEEEec
Confidence            8899998 89999999864

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.55  E-value=2.6e-13  Score=102.57  Aligned_cols=135  Identities=13%  Similarity=0.148  Sum_probs=99.2

Q ss_pred             CCcceEEEcCCCCEEEEcC--CCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-----------CeEEE
Q 030700           10 NHPEDVSVDGNGVLYTATG--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----------QGLLK   75 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~--~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----------~~i~~   75 (173)
                      ..|+++++ .+++||+++.  ++.|.++|+ ++++......+..|. +++++++|++ |++..+           ..+.+
T Consensus       131 ~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~-~i~~~~dG~l-~v~~~~~~~~~~~~~~~~~v~~  207 (328)
T 3dsm_A          131 GSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPT-SLVMDKYNKM-WTITDGGYEGSPYGYEAPSLYR  207 (328)
T ss_dssp             CBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBC-CCEECTTSEE-EEEBCCBCTTCSSCBCCCEEEE
T ss_pred             CCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCcc-ceEEcCCCCE-EEEECCCccCCccccCCceEEE
Confidence            47999999 5789999983  788999996 456555455567899 9999999998 777654           36888


Q ss_pred             Ecc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE--eec-
Q 030700           76 VSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VLD-  149 (173)
Q Consensus        76 ~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~-  149 (173)
                      ++. ++ +........+   ..|++|+++|||+ +|+++                    ..|+++|++++++..  +.. 
T Consensus       208 id~~t~~v~~~~~~~~g---~~p~~la~~~d~~~lyv~~--------------------~~v~~~d~~t~~~~~~~~~~~  264 (328)
T 3dsm_A          208 IDAETFTVEKQFKFKLG---DWPSEVQLNGTRDTLYWIN--------------------NDIWRMPVEADRVPVRPFLEF  264 (328)
T ss_dssp             EETTTTEEEEEEECCTT---CCCEEEEECTTSCEEEEES--------------------SSEEEEETTCSSCCSSCSBCC
T ss_pred             EECCCCeEEEEEecCCC---CCceeEEEecCCCEEEEEc--------------------cEEEEEECCCCceeeeeeecC
Confidence            886 45 3322222112   4799999999875 78874                    278999998776521  112 


Q ss_pred             cccCcceEEEccCCCEEEEEe
Q 030700          150 GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +...|.+|+++|+++.|||++
T Consensus       265 ~~~~p~gi~vdp~~g~lyva~  285 (328)
T 3dsm_A          265 RDTKYYGLTVNPNNGEVYVAD  285 (328)
T ss_dssp             CSSCEEEEEECTTTCCEEEEE
T ss_pred             CCCceEEEEEcCCCCeEEEEc
Confidence            146799999999777899998

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=99.54  E-value=1.2e-12  Score=95.68  Aligned_cols=139  Identities=20%  Similarity=0.214  Sum_probs=100.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C--cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g--~~~~   84 (173)
                      ...+|++.+ +++||+.+ .++.++.+|+ +.+...-.+..+.+. |++.  +++.||+++..+.+..+|+. .  ...+
T Consensus        87 ~FgeGit~~-g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~eG~-glt~--dg~~L~~SdGs~~i~~iDp~T~~v~~~I  162 (262)
T 3nol_A           87 YFGEGISDW-KDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGEGW-GLTH--NDQYLIMSDGTPVLRFLDPESLTPVRTI  162 (262)
T ss_dssp             CCEEEEEEE-TTEEEEEESSSSEEEEEETTTCCEEEEEECSSCCC-CEEE--CSSCEEECCSSSEEEEECTTTCSEEEEE
T ss_pred             cceeEEEEe-CCEEEEEEeeCCEEEEEECccCcEEEEEECCCCce-EEec--CCCEEEEECCCCeEEEEcCCCCeEEEEE
Confidence            345778886 55999888 6788999996 456544333344556 6664  44444999876779999974 4  4444


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-------------c
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------------L  151 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------------~  151 (173)
                      .....+.++..+|.+.+. +|++|+....                 ++.|.++||++|++.....-             .
T Consensus       163 ~V~~~g~~~~~lNELe~~-~G~lyan~w~-----------------~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~  224 (262)
T 3nol_A          163 TVTAHGEELPELNELEWV-DGEIFANVWQ-----------------TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPI  224 (262)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSC
T ss_pred             EeccCCccccccceeEEE-CCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEECCcCccccccccCcC
Confidence            333456777888999987 8999988642                 35899999999987665432             1


Q ss_pred             cCcceEEEccCCCEEEEEe
Q 030700          152 YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..|||||++|+++.|||+-
T Consensus       225 ~vlNGIA~dp~~~~lfVTG  243 (262)
T 3nol_A          225 DVLNGIAWDKEHHRLFVTG  243 (262)
T ss_dssp             CCEEEEEEETTTTEEEEEE
T ss_pred             CceEEEEEcCCCCEEEEEC
Confidence            3679999999999999984

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=99.53  E-value=3.9e-13  Score=100.63  Aligned_cols=136  Identities=18%  Similarity=0.218  Sum_probs=98.2

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-EEEe-----------ccccCccccceEEccCCcEEEEEeCC-CeEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WEDW-----------HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLL   74 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-~~~~-----------~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~   74 (173)
                      ...+.+++..+++.+|+++ ..+.|+++++++. ...+           ......|+ ||  +++++.||+++.. +.|.
T Consensus       116 ~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pn-gi--s~dg~~lyv~d~~~~~I~  192 (306)
T 2p4o_A          116 AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN-GL--KRFGNFLYVSNTEKMLLL  192 (306)
T ss_dssp             CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE-EE--EEETTEEEEEETTTTEEE
T ss_pred             ccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCC-Cc--CcCCCEEEEEeCCCCEEE
Confidence            3567888887788899988 5889999997642 1111           11234688 98  7777766999977 4677


Q ss_pred             EEccC--C-c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           75 KVSEE--G-V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        75 ~~~~~--g-~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      +++.+  | .   +.+..      +..|++|+++++|++|+++..                 .++|.+++++ ++...+.
T Consensus       193 ~~~~~~~g~~~~~~~~~~------~~~P~gi~vd~dG~l~va~~~-----------------~~~V~~~~~~-G~~~~~~  248 (306)
T 2p4o_A          193 RIPVDSTDKPGEPEIFVE------QTNIDDFAFDVEGNLYGATHI-----------------YNSVVRIAPD-RSTTIIA  248 (306)
T ss_dssp             EEEBCTTSCBCCCEEEEE------SCCCSSEEEBTTCCEEEECBT-----------------TCCEEEECTT-CCEEEEE
T ss_pred             EEEeCCCCCCCccEEEec------cCCCCCeEECCCCCEEEEeCC-----------------CCeEEEECCC-CCEEEEe
Confidence            77743  4 2   22222      257999999999999999642                 3689999997 5544332


Q ss_pred             ---ccccCcceEEEc---cCCCEEEEEec
Q 030700          149 ---DGLYFANGVALS---EDERFLVVCES  171 (173)
Q Consensus       149 ---~~~~~p~gi~~~---~dg~~lyv~~~  171 (173)
                         .++..|.+++|+   ||+++|||++.
T Consensus       249 ~~~~~~~~p~~~a~~g~~~d~~~LyVt~~  277 (306)
T 2p4o_A          249 QAEQGVIGSTAVAFGQTEGDCTAIYVVTN  277 (306)
T ss_dssp             CGGGTCTTEEEEEECCSTTTTTEEEEEEC
T ss_pred             ecccccCCceEEEEecccCCCCEEEEECC
Confidence               235789999998   89999999975

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.52  E-value=1e-12  Score=99.20  Aligned_cols=145  Identities=12%  Similarity=0.146  Sum_probs=97.9

Q ss_pred             cCCcceEEEcCCCCEEEEcC---CCeEEEEcC-CCcEEEe---ccccCccccceEEccCCcEEEEEeCCC-eEEEEc--c
Q 030700            9 VNHPEDVSVDGNGVLYTATG---DGWIKRMHP-NGTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--E   78 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~---~~~i~~~~~-~g~~~~~---~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~--~   78 (173)
                      ...|.+++++|+|+||+++.   ++.|+.|+. +|+...+   ......|. +++++++|++||++.... .+..++  .
T Consensus        39 ~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~-~~a~spdg~~l~~~~~~~~~v~v~~~~~  117 (347)
T 3hfq_A           39 TQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPA-YVAVDEARQLVYSANYHKGTAEVMKIAA  117 (347)
T ss_dssp             CSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCS-EEEEETTTTEEEEEETTTTEEEEEEECT
T ss_pred             cCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCE-EEEECCCCCEEEEEeCCCCEEEEEEeCC
Confidence            46799999999999998773   578888885 4444333   23466899 999999999878888553 344444  4


Q ss_pred             CC-cEEEEecc-CCc------cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC-CCeeEEee-
Q 030700           79 EG-VTVLVSQF-NGS------QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TNQTSLVL-  148 (173)
Q Consensus        79 ~g-~~~~~~~~-~~~------~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~~~~~~-  148 (173)
                      +| ...+.... .+.      ....++.++++|||++|+++..                 ++.|+.|+.+ ++++.... 
T Consensus       118 ~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~-----------------~~~v~~~~~~~~g~~~~~~~  180 (347)
T 3hfq_A          118 DGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG-----------------SDKVYVYNVSDAGQLSEQSV  180 (347)
T ss_dssp             TSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETT-----------------TTEEEEEEECTTSCEEEEEE
T ss_pred             CCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCC-----------------CCEEEEEEECCCCcEEEeee
Confidence            55 44333221 111      1235778999999998888643                 2467766665 45544332 


Q ss_pred             ---ccccCcceEEEccCCCEEEEEec
Q 030700          149 ---DGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       149 ---~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                         .....|++++|+|||++||+++.
T Consensus       181 ~~~~~g~~p~~~~~spdg~~l~v~~~  206 (347)
T 3hfq_A          181 LTMEAGFGPRHLVFSPDGQYAFLAGE  206 (347)
T ss_dssp             EECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEcCCCCCCceEEECCCCCEEEEEeC
Confidence               12346889999999999999764

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=99.52  E-value=1.5e-12  Score=95.26  Aligned_cols=139  Identities=19%  Similarity=0.240  Sum_probs=100.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C--cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g--~~~~   84 (173)
                      ...+|++++ +++||+.+ .++.++.+|+ +.+...-.+..+.+. |++.  +++.||+++..+.+..+|+. .  ...+
T Consensus        96 ~FgeGit~~-g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~eGw-GLt~--Dg~~L~vSdGs~~l~~iDp~T~~v~~~I  171 (268)
T 3nok_A           96 IFAEGLASD-GERLYQLTWTEGLLFTWSGMPPQRERTTRYSGEGW-GLCY--WNGKLVRSDGGTMLTFHEPDGFALVGAV  171 (268)
T ss_dssp             CCEEEEEEC-SSCEEEEESSSCEEEEEETTTTEEEEEEECSSCCC-CEEE--ETTEEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             cceeEEEEe-CCEEEEEEccCCEEEEEECCcCcEEEEEeCCCcee-EEec--CCCEEEEECCCCEEEEEcCCCCeEEEEE
Confidence            345788886 45999888 6788999996 455544333344556 7765  44555999976789999964 4  4444


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--------------
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--------------  150 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------------  150 (173)
                      .....+.++..+|.|.+. +|++|+....                 ++.|.++||++|++.....-              
T Consensus       172 ~V~~~g~~v~~lNeLe~~-dG~lyanvw~-----------------s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~  233 (268)
T 3nok_A          172 QVKLRGQPVELINELECA-NGVIYANIWH-----------------SSDVLEIDPATGTVVGVIDASALTRAVAGQVTNP  233 (268)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------CSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCT
T ss_pred             EeCCCCcccccccccEEe-CCEEEEEECC-----------------CCeEEEEeCCCCcEEEEEECCCCcccccccccCc
Confidence            433456677788999988 8899988642                 35999999999987655431              


Q ss_pred             ccCcceEEEccCCCEEEEEe
Q 030700          151 LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ...+||||++|+++.||||-
T Consensus       234 ~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          234 EAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             TCCEEEEEECTTTCCEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEeC
Confidence            13779999999999999984

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=99.52  E-value=1.6e-13  Score=108.42  Aligned_cols=168  Identities=16%  Similarity=0.239  Sum_probs=110.4

Q ss_pred             CceecCCccCCcceEEEcCCCC--EEEEcCCCeEEEEcCCCcE-----EEe----ccc-----cCccccceEEccC----
Q 030700            1 MIKLGEGIVNHPEDVSVDGNGV--LYTATGDGWIKRMHPNGTW-----EDW----HQV-----GSQSLLGLTTTKE----   60 (173)
Q Consensus         1 ~~~~~~~~~~~p~~l~~~~~g~--l~~~~~~~~i~~~~~~g~~-----~~~----~~~-----~~~p~~gl~~~~~----   60 (173)
                      +++++.+ |..|.+|++.|+|.  |||+...|+|++++.+|..     ..+    ...     ...+. ||+++|+    
T Consensus         6 v~~va~g-L~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gll-gia~~P~f~~n   83 (463)
T 2wg3_C            6 IQEVVSG-LRQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLL-SLAFHPNYKKN   83 (463)
T ss_dssp             EEEEEEE-ESSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEE-EEEECTTHHHH
T ss_pred             EEEeccC-CCCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcce-eeEeCCCCcCC
Confidence            4677777 89999999999884  9999988999999876642     111    111     23466 8999985    


Q ss_pred             CcEEEEEeCC-------------CeEEEEcc-C--------C-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcC
Q 030700           61 NNVIIVCDSQ-------------QGLLKVSE-E--------G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFT  117 (173)
Q Consensus        61 g~l~~v~~~~-------------~~i~~~~~-~--------g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~  117 (173)
                      +.+ |++...             ..|.++.. +        . .+.+.+.......+....|+++|||.|||+.......
T Consensus        84 ~~l-Yv~yt~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~~~  162 (463)
T 2wg3_C           84 GKL-YVSYTTNQERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGMIT  162 (463)
T ss_dssp             CEE-EEEEEECCCSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTTCC
T ss_pred             CEE-EEEEeCCCCCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCCCC
Confidence            666 887431             24555542 1        1 2344443222234567889999999999996553211


Q ss_pred             cccceeeecccCCCceEEEEcCCCC--------------------eeEEeeccccCcceEEEccC-----CC-EEEEEec
Q 030700          118 PAEYYLDLVSGEPHGVLLKYDPSTN--------------------QTSLVLDGLYFANGVALSED-----ER-FLVVCES  171 (173)
Q Consensus       118 ~~~~~~~~~~~~~~~~v~~~d~~~~--------------------~~~~~~~~~~~p~gi~~~~d-----g~-~lyv~~~  171 (173)
                      ..+.....-.....|+|+|+++++.                    ..+.++.++++|.||+|+|+     |+ ++|++|.
T Consensus       163 ~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RNp~gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          163 LDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHDPGRCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             HHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSSCCBEEEESSCSSTTCSEEEEEECC
T ss_pred             CCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCCcceEEECCCCCCcccceEEEeccc
Confidence            1100000001234689999999963                    35688899999999999997     33 6888875

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.50  E-value=3.6e-12  Score=95.82  Aligned_cols=142  Identities=13%  Similarity=0.136  Sum_probs=101.9

Q ss_pred             CcceEEEcCCC-CEEEEc--CCCeEEEEcCC-CcEEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEE
Q 030700           11 HPEDVSVDGNG-VLYTAT--GDGWIKRMHPN-GTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTV   83 (173)
Q Consensus        11 ~p~~l~~~~~g-~l~~~~--~~~~i~~~~~~-g~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~   83 (173)
                      .|.+++++|+| .+|+++  .++.|+.+|.. ++...... ....|. +++++++|+.+|+++....+..++. ++ ...
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~  220 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMST-GLALDSEGKRLYTTNADGELITIDTADNKILS  220 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCC-CCEEETTTTEEEEECTTSEEEEEETTTTEEEE
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccc-eEEECCCCCEEEEEcCCCeEEEEECCCCeEEE
Confidence            37899999987 488877  46789999964 55444333 445688 9999999998798887677888885 55 332


Q ss_pred             EEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      ........+...+.+++++|+|+ +|+++.                 ..+.|+.+|+.+++...... ...+.+++|+||
T Consensus       221 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~-~~~~~~~~~s~d  282 (353)
T 3vgz_A          221 RKKLLDDGKEHFFINISLDTARQRAFITDS-----------------KAAEVLVVDTRNGNILAKVA-APESLAVLFNPA  282 (353)
T ss_dssp             EEECCCSSSCCCEEEEEEETTTTEEEEEES-----------------SSSEEEEEETTTCCEEEEEE-CSSCCCEEEETT
T ss_pred             EEEcCCCCCCcccceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEE-cCCCceEEECCC
Confidence            22221111234678899999997 788753                 23689999998877544443 345688999999


Q ss_pred             CCEEEEEec
Q 030700          163 ERFLVVCES  171 (173)
Q Consensus       163 g~~lyv~~~  171 (173)
                      |+++|+++.
T Consensus       283 g~~l~v~~~  291 (353)
T 3vgz_A          283 RNEAYVTHR  291 (353)
T ss_dssp             TTEEEEEET
T ss_pred             CCEEEEEEC
Confidence            999999874

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.49  E-value=2.3e-12  Score=97.90  Aligned_cols=142  Identities=14%  Similarity=0.174  Sum_probs=98.1

Q ss_pred             CCcceEEEcC-CCCEEEEcC----CCeEEEEcC-CCcEEEeccc------------------------------cCcccc
Q 030700           10 NHPEDVSVDG-NGVLYTATG----DGWIKRMHP-NGTWEDWHQV------------------------------GSQSLL   53 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~~----~~~i~~~~~-~g~~~~~~~~------------------------------~~~p~~   53 (173)
                      ..|.++++++ +|.+|+++.    .+.|++++. +|+..++...                              ...++ 
T Consensus       120 ~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~-  198 (343)
T 2qe8_A          120 SFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVN-  198 (343)
T ss_dssp             CCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEE-
T ss_pred             cccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccc-
Confidence            4679999997 579999884    567888885 3554443211                              02367 


Q ss_pred             ceEEccCCcEEEEEeCCC-eEEEEcc----CC-cE--EEEecc--CCccccCCccEEEcCCCcEEEEeCcCCcCccccee
Q 030700           54 GLTTTKENNVIIVCDSQQ-GLLKVSE----EG-VT--VLVSQF--NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYL  123 (173)
Q Consensus        54 gl~~~~~g~l~~v~~~~~-~i~~~~~----~g-~~--~~~~~~--~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~  123 (173)
                      ||+++++|+.||+++... .+++++.    ++ ..  .+...+  .+ ....|++|++|++|++|+++..          
T Consensus       199 gia~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g-~~g~pdgia~d~~G~l~va~~~----------  267 (343)
T 2qe8_A          199 GIVLDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYS-EKPICDGISIDKDHNIYVGDLA----------  267 (343)
T ss_dssp             EEEECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEE-ECCSCSCEEECTTCCEEEEEGG----------
T ss_pred             eeEeccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecc-cCCCCceEEECCCCCEEEEccC----------
Confidence            999999998779988654 6887762    22 10  000000  00 0137899999999999999743          


Q ss_pred             eecccCCCceEEEEcCCCCeeEEeecc--ccCcceEEEccCCCEEEEEec
Q 030700          124 DLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       124 ~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p~gi~~~~dg~~lyv~~~  171 (173)
                             .++|.++|+++++...+...  +..|.+|+|+++++ |||++.
T Consensus       268 -------~~~V~~~d~~~G~~~~~~~~~~~~~p~~va~~~~g~-l~v~~~  309 (343)
T 2qe8_A          268 -------HSAIGVITSADRAYKLLVTDEKLSWTDSFNFGSDGY-LYFDCN  309 (343)
T ss_dssp             -------GTEEEEEETTTTEEEEEEECGGGSCEEEEEECTTSC-EEEEEC
T ss_pred             -------CCeEEEEECCCCCEEEEEECCceecCCeeEECCCCc-EEEEeC
Confidence                   36999999954776655543  67899999999976 888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=99.48  E-value=6.9e-12  Score=90.85  Aligned_cols=139  Identities=16%  Similarity=0.121  Sum_probs=99.7

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C--cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g--~~~~   84 (173)
                      ...+|++++ +++||+.+ ..+.++.+|+ +.+...-....+.+. |++.  +++.||+++....+..+|+. .  ...+
T Consensus        65 ~fgeGi~~~-~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~Gw-glt~--dg~~L~vSdgs~~l~~iDp~t~~~~~~I  140 (243)
T 3mbr_X           65 YFGAGIVAW-RDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEGW-ALTS--DDSHLYMSDGTAVIRKLDPDTLQQVGSI  140 (243)
T ss_dssp             CCEEEEEEE-TTEEEEEESSSSEEEEEETTTTEEEEEEECSSCCC-EEEE--CSSCEEEECSSSEEEEECTTTCCEEEEE
T ss_pred             cceeEEEEe-CCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCce-EEee--CCCEEEEECCCCeEEEEeCCCCeEEEEE
Confidence            345788876 57899887 6788999996 455544333344556 6664  44444999977789999964 3  4444


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--c------------
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--G------------  150 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~------------  150 (173)
                      .....+.++..+|.|... +|++|+....                 +..|.++||++|++.....  +            
T Consensus       141 ~V~~~g~~~~~lNeLe~~-~G~lyanvw~-----------------s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~  202 (243)
T 3mbr_X          141 KVTAGGRPLDNLNELEWV-NGELLANVWL-----------------TSRIARIDPASGKVVAWIDLQALVPDADALTDST  202 (243)
T ss_dssp             ECEETTEECCCEEEEEEE-TTEEEEEETT-----------------TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTT
T ss_pred             EEccCCcccccceeeEEe-CCEEEEEECC-----------------CCeEEEEECCCCCEEEEEECCcCccccccccCCc
Confidence            444456677788999877 8899987642                 2589999999998765543  1            


Q ss_pred             ccCcceEEEccCCCEEEEEe
Q 030700          151 LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ...+||||++|+++.||||-
T Consensus       203 ~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          203 NDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             SSCEEEEEEETTTTEEEEEE
T ss_pred             CCceEEEEEcCCCCEEEEEC
Confidence            24679999999999999984

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.48  E-value=6.5e-12  Score=94.41  Aligned_cols=139  Identities=19%  Similarity=0.234  Sum_probs=101.9

Q ss_pred             CCcceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEEecc-----ccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC
Q 030700           10 NHPEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWEDWHQ-----VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~~~~-----~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g   80 (173)
                      ..|.+++++|+| .||+++.++.|+.+|. +++......     ....+. +++++++|+.+|+++.. ..+..++. ++
T Consensus       185 ~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~  263 (353)
T 3vgz_A          185 KMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFI-NISLDTARQRAFITDSKAAEVLVVDTRNG  263 (353)
T ss_dssp             TTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEE-EEEEETTTTEEEEEESSSSEEEEEETTTC
T ss_pred             CccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccc-eEEECCCCCEEEEEeCCCCEEEEEECCCC
Confidence            358999999987 5888888889999995 454433222     123467 89999999977888866 56777775 45


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~  158 (173)
                       .......      ..+.+++++|+|+ +|+++.                 .++.|..+|..+++..........|.+++
T Consensus       264 ~~~~~~~~------~~~~~~~~s~dg~~l~v~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  320 (353)
T 3vgz_A          264 NILAKVAA------PESLAVLFNPARNEAYVTHR-----------------QAGKVSVIDAKSYKVVKTFDTPTHPNSLA  320 (353)
T ss_dssp             CEEEEEEC------SSCCCEEEETTTTEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSEEEEEE
T ss_pred             cEEEEEEc------CCCceEEECCCCCEEEEEEC-----------------CCCeEEEEECCCCeEEEEEecCCCCCeEE
Confidence             3222221      2357899999997 888853                 23689999998887665555556789999


Q ss_pred             EccCCCEEEEEecC
Q 030700          159 LSEDERFLVVCESW  172 (173)
Q Consensus       159 ~~~dg~~lyv~~~~  172 (173)
                      |+|||++||++...
T Consensus       321 ~s~dg~~l~v~~~~  334 (353)
T 3vgz_A          321 LSADGKTLYVSVKQ  334 (353)
T ss_dssp             ECTTSCEEEEEEEC
T ss_pred             EcCCCCEEEEEEcc
Confidence            99999999998653

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.47  E-value=1.5e-11  Score=93.36  Aligned_cols=146  Identities=15%  Similarity=0.197  Sum_probs=93.8

Q ss_pred             CcceEEEcCCCC-EEEEc-CCCeEEEEc--CCC-----c-E-------EEeccccCccccceEEccCCcEEEEEeCC-Ce
Q 030700           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNG-----T-W-------EDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG   72 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~-~~~~i~~~~--~~g-----~-~-------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~   72 (173)
                      .|.+++++|+|+ ||+++ .++.|..|+  ..+     + +       .........|. +++|+++|+++|+++.. ..
T Consensus       156 ~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~v~~~~~~~  234 (361)
T 3scy_A          156 HLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPR-HLIFNSDGKFAYLINEIGGT  234 (361)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEE-EEEECTTSSEEEEEETTTCE
T ss_pred             cceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCe-EEEEcCCCCEEEEEcCCCCe
Confidence            457899999996 88887 567777665  333     2 2       11223355788 99999999977888854 45


Q ss_pred             EEEEcc-CC-cEEEEeccC-CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           73 LLKVSE-EG-VTVLVSQFN-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        73 i~~~~~-~g-~~~~~~~~~-~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      +..++. +| .+.+..... ......|.+++++|||+ +|+++...              ...-.+|.+++.+++.+.+.
T Consensus       235 v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~--------------~~~i~v~~~~~~~g~~~~~~  300 (361)
T 3scy_A          235 VIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLK--------------ADGVAIFKVDETNGTLTKVG  300 (361)
T ss_dssp             EEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSS--------------SCEEEEEEECTTTCCEEEEE
T ss_pred             EEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCC--------------CCEEEEEEEcCCCCcEEEee
Confidence            555553 56 443332211 11234578999999997 67775320              01124556665566654443


Q ss_pred             c--cccCcceEEEccCCCEEEEEec
Q 030700          149 D--GLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       149 ~--~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .  ....|.+++|+|||++||++..
T Consensus       301 ~~~~g~~~~~~~~spdg~~l~~~~~  325 (361)
T 3scy_A          301 YQLTGIHPRNFIITPNGKYLLVACR  325 (361)
T ss_dssp             EEECSSCCCEEEECTTSCEEEEEET
T ss_pred             EecCCCCCceEEECCCCCEEEEEEC
Confidence            2  1357899999999999999863

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.45  E-value=6.5e-12  Score=93.89  Aligned_cols=142  Identities=10%  Similarity=0.093  Sum_probs=97.7

Q ss_pred             CCcce-EEEcCCCC-EEEEcCC-C--eEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-Ce-EEEEc--cC
Q 030700           10 NHPED-VSVDGNGV-LYTATGD-G--WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG-LLKVS--EE   79 (173)
Q Consensus        10 ~~p~~-l~~~~~g~-l~~~~~~-~--~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~-i~~~~--~~   79 (173)
                      ..|.. ++++|+|. ||++... +  .|+.++. +++..........|. +++++++|+.+|+++.. .. +..++  .+
T Consensus        83 ~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~i~~~~~~~~  161 (331)
T 3u4y_A           83 QSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYDAV-GIAISPNGNGLILIDRSSANTVRRFKIDAD  161 (331)
T ss_dssp             SSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTTEE-EEEECTTSSCEEEEEETTTTEEEEEEECTT
T ss_pred             CCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCCcc-ceEECCCCCEEEEEecCCCceEEEEEECCC
Confidence            45777 99999986 5643343 3  8999996 455554445566788 99999999865888755 44 44444  45


Q ss_pred             C-cEEE-EeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee---EEeeccccC
Q 030700           80 G-VTVL-VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT---SLVLDGLYF  153 (173)
Q Consensus        80 g-~~~~-~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~~~~~~~~~  153 (173)
                      | .... .....  ....|..++++|||+ +|+++.                 .++.|..+|.++++.   .........
T Consensus       162 g~~~~~~~~~~~--~~~~~~~~~~spdg~~l~v~~~-----------------~~~~v~v~d~~~~~~~~~~~~~~~~~~  222 (331)
T 3u4y_A          162 GVLFDTGQEFIS--GGTRPFNITFTPDGNFAFVANL-----------------IGNSIGILETQNPENITLLNAVGTNNL  222 (331)
T ss_dssp             CCEEEEEEEEEC--SSSSEEEEEECTTSSEEEEEET-----------------TTTEEEEEECSSTTSCEEEEEEECSSC
T ss_pred             CcEeecCCcccc--CCCCccceEECCCCCEEEEEeC-----------------CCCeEEEEECCCCcccceeeeccCCCC
Confidence            5 3221 11111  124689999999997 888853                 236899999887765   333444577


Q ss_pred             cceEEEccCCCEEEEEec
Q 030700          154 ANGVALSEDERFLVVCES  171 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~~  171 (173)
                      |.+++|+|||++||++..
T Consensus       223 ~~~~~~spdg~~l~v~~~  240 (331)
T 3u4y_A          223 PGTIVVSRDGSTVYVLTE  240 (331)
T ss_dssp             CCCEEECTTSSEEEEECS
T ss_pred             CceEEECCCCCEEEEEEc
Confidence            899999999999999864

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=99.43  E-value=8.6e-13  Score=105.40  Aligned_cols=153  Identities=16%  Similarity=0.209  Sum_probs=91.8

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEcCCCeEE-E----E--------cCCCcEEEeccccCccccceEEccCCcEEEEEeC
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTATGDGWIK-R----M--------HPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~~~~~i~-~----~--------~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~   69 (173)
                      ++...|.+||+++++| +|.+|++-.++.-. .    .        +..|++.++.+..+.+. +..|..+  ++++|..
T Consensus       378 vGAT~mdRpEdi~v~p~~g~vY~alTnn~~rg~~~~~~~~~Npr~~n~~G~I~r~~e~~~d~~-a~~f~W~--i~l~~G~  454 (592)
T 4a9v_A          378 VGATRMDRPEWIVVSPKDGQVYCTLTNNAKRGEDGQPVGGPNPREKNVYGQILRWRTDRDDHA-SKTFAWD--LFVVAGN  454 (592)
T ss_dssp             TTCCCEECEEEEEECTTTCCEEEEECCBTTTTSTTSCCBTTBCCSSBSSCEEEEEEEGGGCTT-CSEEEEE--EEEECCC
T ss_pred             cCCccccCccceeEcCCCCEEEEEEeCCCCCCCcCccccCCCCccCCCCCeEEEEeeCCCCcc-cceeeEE--EEEEccC
Confidence            3455689999999999 78999876321100 0    0        11244444443333333 3444322  3122211


Q ss_pred             CCeEEEEccC-C-cEEEEeccCCccccCCccEEEcCCCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           70 QQGLLKVSEE-G-VTVLVSQFNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        70 ~~~i~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      ..     ..+ + ..-......++++++||+|+++++|+||| +|...  +..    ...+....+.||++++++++++.
T Consensus       455 p~-----~~~~~~~~g~~~~~~~~~fnsPDnL~fd~~G~LWf~TD~~~--~~~----g~~~~~gnn~v~~~dp~tGel~~  523 (592)
T 4a9v_A          455 PS-----VHAGTPKGGSSNITPQNMFNSPDGLGFDKAGRLWILTDGDS--SNA----GDFAGMGNNQMLCADPATGEIRR  523 (592)
T ss_dssp             TT-----TSTTSGGGCCTTCCTTTCCCCEEEEEECTTCCEEEEECCCC--CCS----GGGTTCCSCEEEEECTTTCCEEE
T ss_pred             Cc-----ccccccccCccCccccCccCCCCceEECCCCCEEEEeCCCc--Ccc----ccccccCCceEEEEeCCCCeEEE
Confidence            10     000 0 00011122345789999999999999999 77542  211    11122345699999999899988


Q ss_pred             eecc--ccCcceEEEccCCCEEEEEe
Q 030700          147 VLDG--LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       147 ~~~~--~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ++..  ...|+|++||||+++|||+-
T Consensus       524 fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          524 FMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             EEeCCCCccccCCEECCCCCEEEEEE
Confidence            8864  46789999999999999975

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.41  E-value=6e-11  Score=88.61  Aligned_cols=141  Identities=18%  Similarity=0.302  Sum_probs=95.2

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCe-EEEEc--CCCcEE----EeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGW-IKRMH--PNGTWE----DWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-   78 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~-i~~~~--~~g~~~----~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-   78 (173)
                      ..|.+++++|+| .||+++ .++. |..|+  .+|.+.    ........|. +++++++|+.+|++... ..+..++. 
T Consensus       128 ~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~spdg~~l~v~~~~~~~v~v~d~~  206 (331)
T 3u4y_A          128 YDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPF-NITFTPDGNFAFVANLIGNSIGILETQ  206 (331)
T ss_dssp             TTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEE-EEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             CCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCcc-ceEECCCCCEEEEEeCCCCeEEEEECC
Confidence            468999999998 488887 4466 66554  455442    2223455688 99999999966888765 45666664 


Q ss_pred             CC-c-EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec---c--
Q 030700           79 EG-V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD---G--  150 (173)
Q Consensus        79 ~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~---~--  150 (173)
                      ++ . ..+.....+   ..|.+++++|||+ +|+++.                 .++.|+.+|+++++++.+..   .  
T Consensus       207 ~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~v~~~-----------------~~~~i~~~d~~~~~~~~~~~~~~~~~  266 (331)
T 3u4y_A          207 NPENITLLNAVGTN---NLPGTIVVSRDGSTVYVLTE-----------------STVDVFNFNQLSGTLSFVKSFGHGLL  266 (331)
T ss_dssp             STTSCEEEEEEECS---SCCCCEEECTTSSEEEEECS-----------------SEEEEEEEETTTTEEEEEEEEECCCC
T ss_pred             CCcccceeeeccCC---CCCceEEECCCCCEEEEEEc-----------------CCCEEEEEECCCCceeeecccccccc
Confidence            45 4 222222222   5789999999998 777743                 23679999998887633321   1  


Q ss_pred             -----ccCcceEEEccCCCEEEEEec
Q 030700          151 -----LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 -----~~~p~gi~~~~dg~~lyv~~~  171 (173)
                           ...+++++|+|||++||++..
T Consensus       267 ~~~~~~~~~~~~~~spdg~~l~v~~~  292 (331)
T 3u4y_A          267 IDPRPLFGANQMALNKTETKLFISAN  292 (331)
T ss_dssp             CCCGGGTTCCCEEECTTSSEEEEEET
T ss_pred             cCCCCcccccceEECCCCCEEEEecC
Confidence                 122356899999999999864

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.40  E-value=4.7e-11  Score=90.04  Aligned_cols=145  Identities=21%  Similarity=0.180  Sum_probs=92.0

Q ss_pred             cCCcceEEEcCCCC-EEEEc-CCCeEEEEc--CCCcEEEecc---c---------cCccccceEEccCCcEEEEEeCCC-
Q 030700            9 VNHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDWHQ---V---------GSQSLLGLTTTKENNVIIVCDSQQ-   71 (173)
Q Consensus         9 ~~~p~~l~~~~~g~-l~~~~-~~~~i~~~~--~~g~~~~~~~---~---------~~~p~~gl~~~~~g~l~~v~~~~~-   71 (173)
                      ...|.+++++|+|+ ||++. .++.|..|+  .+|....+..   .         ...+. +++++++|++ |+++... 
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~spdg~l-~v~~~~~~  162 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIH-YTDLTPDNRL-AVIDLGSD  162 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEE-EEEECTTSCE-EEEETTTT
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCce-EEEECCCCcE-EEEeCCCC
Confidence            36799999999986 88877 567777776  4555433211   1         12467 8999999995 9988764 


Q ss_pred             eEEEEc--cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe
Q 030700           72 GLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (173)
Q Consensus        72 ~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  147 (173)
                      .+..++  .+| ....... .......|+.++++|||+ +|+++...               ..-.++.++..+++...+
T Consensus       163 ~v~~~~~~~~g~~~~~~~~-~~~~g~~p~~~~~spdg~~l~v~~~~~---------------~~v~v~~~~~~~g~~~~~  226 (347)
T 3hfq_A          163 KVYVYNVSDAGQLSEQSVL-TMEAGFGPRHLVFSPDGQYAFLAGELS---------------SQIASLKYDTQTGAFTQL  226 (347)
T ss_dssp             EEEEEEECTTSCEEEEEEE-ECCTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEEEETTTTEEEEE
T ss_pred             EEEEEEECCCCcEEEeeeE-EcCCCCCCceEEECCCCCEEEEEeCCC---------------CEEEEEEecCCCCceEEe
Confidence            455555  256 4433221 111124688999999998 78875331               112445555545665433


Q ss_pred             ecc---------ccCcceEEEccCCCEEEEEec
Q 030700          148 LDG---------LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       148 ~~~---------~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...         ...|.+++|+|||++||+++.
T Consensus       227 ~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~  259 (347)
T 3hfq_A          227 GIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNR  259 (347)
T ss_dssp             EEEESSCTTCCSCCEEEEEEECTTSCEEEEEEE
T ss_pred             eeeeecCCCCCCCCcceeEEECCCCCEEEEEeC
Confidence            221         134778999999999999865

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=99.39  E-value=7.6e-12  Score=95.68  Aligned_cols=144  Identities=19%  Similarity=0.200  Sum_probs=93.7

Q ss_pred             ccCCcceEEEcCCCCEEEEcC--------------CCeEEEEcCCCcE--------------EEeccccCccccceEEcc
Q 030700            8 IVNHPEDVSVDGNGVLYTATG--------------DGWIKRMHPNGTW--------------EDWHQVGSQSLLGLTTTK   59 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~--------------~~~i~~~~~~g~~--------------~~~~~~~~~p~~gl~~~~   59 (173)
                      ....|.+|+++|+|.||++..              .++|+|++++|++              +.+......|. |+++++
T Consensus       133 ~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~rnp~-g~a~d~  211 (352)
T 2ism_A          133 GLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSLGHRNPQ-GLAWHP  211 (352)
T ss_dssp             CCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEECCSEEC-CCEECT
T ss_pred             CCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEEcCCCcc-cEEEEC
Confidence            346789999999999999862              2689999988832              23333345699 999999


Q ss_pred             -CCcEEEEEeCCCe---------EEEEccCC-cE---EEE--------e-ccCCccccCCccEEEcCCCcEEEEeCcCCc
Q 030700           60 -ENNVIIVCDSQQG---------LLKVSEEG-VT---VLV--------S-QFNGSQLRFANDVIEASDGSLYFTVSSTKF  116 (173)
Q Consensus        60 -~g~l~~v~~~~~~---------i~~~~~~g-~~---~~~--------~-~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~  116 (173)
                       +|++ |+++.+..         +..+.+.+ ..   ...        . ...-.+...|.++++ .+|.+|+++..   
T Consensus       212 ~~g~l-~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~-~~G~l~v~~~~---  286 (352)
T 2ism_A          212 KTGEL-FSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAF-FRGDLYVAGLR---  286 (352)
T ss_dssp             TTCCE-EEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEE-ETTEEEEEETT---
T ss_pred             CCCCE-EEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEE-ECCEEEEEECC---
Confidence             7888 99986643         33333211 00   000        0 000011246889999 57899999743   


Q ss_pred             CcccceeeecccCCCceEEEEcCCCCe-------eEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          117 TPAEYYLDLVSGEPHGVLLKYDPSTNQ-------TSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       117 ~~~~~~~~~~~~~~~~~v~~~d~~~~~-------~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                                    .++|+++++++..       ...+......|.+|+++|||. |||++..
T Consensus       287 --------------~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~-lyv~~~~  334 (352)
T 2ism_A          287 --------------GQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGA-LYVTTSN  334 (352)
T ss_dssp             --------------TTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSC-EEEEECS
T ss_pred             --------------CCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCc-EEEEEeC
Confidence                          2578888765321       233334467899999999995 8888753

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.30  E-value=3.4e-10  Score=83.24  Aligned_cols=140  Identities=15%  Similarity=0.122  Sum_probs=90.3

Q ss_pred             ecCCccCCcceEEEcCCCCEEEEcC---CCeEEEEcC-CCcEEEeccccC--ccccceEEccCCcEEEEEeCCC-eEEEE
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTATG---DGWIKRMHP-NGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDSQQ-GLLKV   76 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~~~---~~~i~~~~~-~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~~-~i~~~   76 (173)
                      +.-+.-.+|.||+++++|.||++..   .+.|.++|. +|++....+...  .+. |++++  ++.||++.... .+..+
T Consensus        15 ~p~~~~~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fge-Gi~~~--g~~lyv~t~~~~~v~vi   91 (266)
T 2iwa_A           15 FPHDPYAFTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGE-GLTLL--NEKLYQVVWLKNIGFIY   91 (266)
T ss_dssp             EECCTTCCEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEE-EEEEE--TTEEEEEETTCSEEEEE
T ss_pred             EECCCCCCcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceE-EEEEe--CCEEEEEEecCCEEEEE
Confidence            3334335689999999899999863   578999995 677665433333  455 66765  33449988764 57777


Q ss_pred             ccCCcEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec------
Q 030700           77 SEEGVTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD------  149 (173)
Q Consensus        77 ~~~g~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------  149 (173)
                      |.+-.+.+.....+    .+.+..+.+|| ++|+++.                  +++|+.+|+++.+......      
T Consensus        92 D~~t~~v~~~i~~g----~~~g~glt~Dg~~l~vs~g------------------s~~l~viD~~t~~v~~~I~Vg~~~~  149 (266)
T 2iwa_A           92 DRRTLSNIKNFTHQ----MKDGWGLATDGKILYGSDG------------------TSILYEIDPHTFKLIKKHNVKYNGH  149 (266)
T ss_dssp             ETTTTEEEEEEECC----SSSCCEEEECSSSEEEECS------------------SSEEEEECTTTCCEEEEEECEETTE
T ss_pred             ECCCCcEEEEEECC----CCCeEEEEECCCEEEEECC------------------CCeEEEEECCCCcEEEEEEECCCCc
Confidence            75332222222111    24556677776 5999863                  2699999999865433322      


Q ss_pred             cccCcceEEEccCCCEEEEEe
Q 030700          150 GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ....||++.+. +| .||++.
T Consensus       150 p~~~~nele~~-dg-~lyvn~  168 (266)
T 2iwa_A          150 RVIRLNELEYI-NG-EVWANI  168 (266)
T ss_dssp             ECCCEEEEEEE-TT-EEEEEE
T ss_pred             ccccceeEEEE-CC-EEEEec
Confidence            13468999998 66 699875

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.30  E-value=3.9e-10  Score=86.03  Aligned_cols=139  Identities=16%  Similarity=0.200  Sum_probs=102.0

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-cEE
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~~~   83 (173)
                      ..+.+++++|+|. ||++. .++.|..|+. +++..........+. +++++++++.+|++... ..+..++. ++ ...
T Consensus        32 ~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~  110 (391)
T 1l0q_A           32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCCCcc-ceEECCCCCEEEEEECCCCEEEEEECCCCeEEE
Confidence            4588999999885 66666 7789999996 566555444455788 99999999976887755 45666675 44 322


Q ss_pred             EEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      ....  +   ..+..++++|+|+ +|++..                 .++.|+.+|..+++..........|..++|+|+
T Consensus       111 ~~~~--~---~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~d  168 (391)
T 1l0q_A          111 TVKT--G---KSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (391)
T ss_dssp             EEEC--S---SSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             EEeC--C---CCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCcEEEEEecCCCcceEEECCC
Confidence            2221  1   3578899999997 667743                 347899999988877666655677899999999


Q ss_pred             CCEEEEEec
Q 030700          163 ERFLVVCES  171 (173)
Q Consensus       163 g~~lyv~~~  171 (173)
                      ++.||++..
T Consensus       169 g~~l~~~~~  177 (391)
T 1l0q_A          169 GTKVYVANF  177 (391)
T ss_dssp             SSEEEEEET
T ss_pred             CCEEEEEeC
Confidence            999988753

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.30  E-value=1e-10  Score=89.25  Aligned_cols=144  Identities=12%  Similarity=0.055  Sum_probs=92.1

Q ss_pred             cCCcceEEEcCCCC-EEEEcCCCeEEEEcC--CCcEEEecc--ccCccccceEEccCCcE--EEEEe-------------
Q 030700            9 VNHPEDVSVDGNGV-LYTATGDGWIKRMHP--NGTWEDWHQ--VGSQSLLGLTTTKENNV--IIVCD-------------   68 (173)
Q Consensus         9 ~~~p~~l~~~~~g~-l~~~~~~~~i~~~~~--~g~~~~~~~--~~~~p~~gl~~~~~g~l--~~v~~-------------   68 (173)
                      ...|.+++++|+|+ ||+++.+ .|..|+.  +|+......  ..+.|. +++++++|+.  +|+++             
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~  116 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPR-ANDADTNTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGG-GGCTTSCCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCc-cEEECCCCCEEEEEEecCCcceeccceeec
Confidence            45799999999986 7777755 7777774  676544322  224588 9999999993  34443             


Q ss_pred             CCCe--EEEEccCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCC-CCe
Q 030700           69 SQQG--LLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS-TNQ  143 (173)
Q Consensus        69 ~~~~--i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~-~~~  143 (173)
                      ....  ++.++.+| ...............+++++++|||+ +|+++..                 .++|+.|+.+ +++
T Consensus       117 ~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~-----------------~~~v~~~~~~~~g~  179 (365)
T 1jof_A          117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLT-----------------ANKLWTHRKLASGE  179 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTSC
T ss_pred             CCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCC-----------------CCEEEEEEECCCCC
Confidence            2222  33333456 33222211111124789999999997 7777532                 2477777776 666


Q ss_pred             eEEeec-----cccCcceEEEccCCCEEEEEec
Q 030700          144 TSLVLD-----GLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       144 ~~~~~~-----~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...+..     ....|.+++|+|||++||++..
T Consensus       180 ~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~  212 (365)
T 1jof_A          180 VELVGSVDAPDPGDHPRWVAMHPTGNYLYALME  212 (365)
T ss_dssp             EEEEEEEECSSTTCCEEEEEECTTSSEEEEEET
T ss_pred             EEEeeeEecCCCCCCCCEeEECCCCCEEEEEEC
Confidence            543321     1456899999999999999763

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=99.29  E-value=1.2e-11  Score=94.60  Aligned_cols=104  Identities=9%  Similarity=0.146  Sum_probs=77.1

Q ss_pred             eecCCccCCcceEEEcCCCCEEEEcC------------------CCeEEEEcCCCcEEEeccccCccccceEEccCCcEE
Q 030700            3 KLGEGIVNHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVI   64 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g~l~~~~~------------------~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~   64 (173)
                      ++....+..|.+++++++|.+|+++.                  .++|+++++ +++..+.+....|+ ||++++|++.+
T Consensus       158 ~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~-~~~~~~~~~l~~pN-Gia~spDg~~l  235 (355)
T 3sre_A          158 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEGFDFAN-GINISPDGKYV  235 (355)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECT-TCCEEEEEEESSEE-EEEECTTSSEE
T ss_pred             ccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEEC-CeEEEeecCCcccC-cceECCCCCEE
Confidence            34445688999999999999988762                  367999987 46655666677899 99999999888


Q ss_pred             EEEeCC-CeEEEEc--cCC-cEEEEeccCCccccCCccEEEcC-CCcEEEEe
Q 030700           65 IVCDSQ-QGLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTV  111 (173)
Q Consensus        65 ~v~~~~-~~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~  111 (173)
                      |+++.. +.|++++  .+| .... ..+. . ...|+++++|+ +|++|++.
T Consensus       236 Yvadt~~~~I~~~~~~~~g~l~~~-~~~~-~-~g~PDGi~vD~e~G~lwva~  284 (355)
T 3sre_A          236 YIAELLAHKIHVYEKHANWTLTPL-RVLS-F-DTLVDNISVDPVTGDLWVGC  284 (355)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEE-EEEE-C-SSEEEEEEECTTTCCEEEEE
T ss_pred             EEEeCCCCeEEEEEECCCCcEecC-EEEe-C-CCCCceEEEeCCCCcEEEEe
Confidence            999976 4566666  356 3221 1111 0 25799999999 69999975

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.29  E-value=1.8e-10  Score=87.91  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=89.8

Q ss_pred             CcceEEEcCCCC-EE--EEc-------------CCCeEEEEc--CCCcEEEecc-----ccCccccceEEccCCcEEEEE
Q 030700           11 HPEDVSVDGNGV-LY--TAT-------------GDGWIKRMH--PNGTWEDWHQ-----VGSQSLLGLTTTKENNVIIVC   67 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~--~~~-------------~~~~i~~~~--~~g~~~~~~~-----~~~~p~~gl~~~~~g~l~~v~   67 (173)
                      .|.+++++|+|+ ||  +++             .++.+..++  .+|++.....     ....++ ++++++||+.+|++
T Consensus        84 ~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~-~~~~spdG~~l~~~  162 (365)
T 1jof_A           84 HPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYSA  162 (365)
T ss_dssp             SGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEEE
T ss_pred             CCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeCCCCcce-EEEECCCCCEEEEE
Confidence            378899999997 23  333             355555554  4676543222     346788 99999999987888


Q ss_pred             eCC-CeEEEEcc--CC-cEEEEeccCCc-cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           68 DSQ-QGLLKVSE--EG-VTVLVSQFNGS-QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        68 ~~~-~~i~~~~~--~g-~~~~~~~~~~~-~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                      +.+ +.|..++.  +| ...+... ... ....|.+++++|||+ +|+++...               ..-.++.+++++
T Consensus       163 ~~~~~~v~~~~~~~~g~~~~~~~~-~~~~~g~~p~~~~~spdg~~l~v~~~~~---------------~~v~v~~~~~~~  226 (365)
T 1jof_A          163 DLTANKLWTHRKLASGEVELVGSV-DAPDPGDHPRWVAMHPTGNYLYALMEAG---------------NRICEYVIDPAT  226 (365)
T ss_dssp             ETTTTEEEEEEECTTSCEEEEEEE-ECSSTTCCEEEEEECTTSSEEEEEETTT---------------TEEEEEEECTTT
T ss_pred             cCCCCEEEEEEECCCCCEEEeeeE-ecCCCCCCCCEeEECCCCCEEEEEECCC---------------CeEEEEEEeCCC
Confidence            865 45666663  46 4433221 111 124689999999996 77775320               112455566656


Q ss_pred             CeeEE----eec---cc---c-------CcceEE-EccCCCEEEEEec
Q 030700          142 NQTSL----VLD---GL---Y-------FANGVA-LSEDERFLVVCES  171 (173)
Q Consensus       142 ~~~~~----~~~---~~---~-------~p~gi~-~~~dg~~lyv~~~  171 (173)
                      ++...    +..   ++   .       .|.+++ |+|||++||+++.
T Consensus       227 g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~  274 (365)
T 1jof_A          227 HMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             CCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECC
Confidence            65431    111   11   2       478999 9999999999864

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=99.29  E-value=1.3e-10  Score=88.85  Aligned_cols=144  Identities=15%  Similarity=0.229  Sum_probs=96.2

Q ss_pred             ccCCcceEEEcCCCCEEEEcC--------------CCeEEEEcCCCcE---------EEeccccCccccceEEcc-CCcE
Q 030700            8 IVNHPEDVSVDGNGVLYTATG--------------DGWIKRMHPNGTW---------EDWHQVGSQSLLGLTTTK-ENNV   63 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~~~~--------------~~~i~~~~~~g~~---------~~~~~~~~~p~~gl~~~~-~g~l   63 (173)
                      ....+.+|+++|+|.||++..              .++|+|++++|++         ..+......|. ||++++ +|++
T Consensus       133 ~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~G~rnp~-Gla~d~~~g~l  211 (354)
T 3a9g_A          133 YIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSYGHRNPQ-GIDWHRASGVM  211 (354)
T ss_dssp             SSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEECCSCCC-EEEECTTTCCE
T ss_pred             CCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEEccCCcc-eEEEeCCCCCE
Confidence            345688999999999999862              2689999998862         33434455799 999999 7888


Q ss_pred             EEEEeCCC----eEEEEccCC-cE---E--------EEec-c-CCccccCCccEEE-------cCCCcEEEEeCcCCcCc
Q 030700           64 IIVCDSQQ----GLLKVSEEG-VT---V--------LVSQ-F-NGSQLRFANDVIE-------ASDGSLYFTVSSTKFTP  118 (173)
Q Consensus        64 ~~v~~~~~----~i~~~~~~g-~~---~--------~~~~-~-~~~~~~~~~~l~~-------~~dG~~~v~~~~~~~~~  118 (173)
                       |+++.+.    .+-.+.+.+ ..   .        +... . .+.+...|.++++       +.+|.+|+++..     
T Consensus       212 -~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~-----  285 (354)
T 3a9g_A          212 -VATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR-----  285 (354)
T ss_dssp             -EEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT-----
T ss_pred             -EEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC-----
Confidence             9998763    244444311 00   0        0000 0 0012246899999       468899998743     


Q ss_pred             ccceeeecccCCCceEEEEcCCC-Cee---EEeecc-ccCcceEEEccCCCEEEEEec
Q 030700          119 AEYYLDLVSGEPHGVLLKYDPST-NQT---SLVLDG-LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       119 ~~~~~~~~~~~~~~~v~~~d~~~-~~~---~~~~~~-~~~p~gi~~~~dg~~lyv~~~  171 (173)
                                  .++|++++++. +++   +.+..+ ...|.+|+++|||. |||++.
T Consensus       286 ------------~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~-lyv~~~  330 (354)
T 3a9g_A          286 ------------GSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGG-ILISTS  330 (354)
T ss_dssp             ------------TTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSC-EEEEEC
T ss_pred             ------------CCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCc-EEEEEe
Confidence                        36888888764 222   233333 56789999999995 888874

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.28  E-value=5.7e-10  Score=85.12  Aligned_cols=137  Identities=18%  Similarity=0.249  Sum_probs=100.0

Q ss_pred             CcceEEEcCCCC-EEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEcc-CC-cEEE
Q 030700           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG-VTVL   84 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g-~~~~   84 (173)
                      .+.+++++|+|. ||++. .++.|+.||.. ++..........+. +++++++|+.+|++.... .+..++. ++ ....
T Consensus        75 ~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~  153 (391)
T 1l0q_A           75 SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPL-GLALSPDGKKLYVTNNGDKTVSVINTVTKAVINT  153 (391)
T ss_dssp             SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeCCCCcc-eEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE
Confidence            688999999885 77776 56899999964 55544444556788 999999999767777654 4666664 45 2222


Q ss_pred             EeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg  163 (173)
                      ...  +   ..+..++++|+|+ +|++..                 .++.|+.+|..+++..........+.+++|+|++
T Consensus       154 ~~~--~---~~~~~~~~~~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~g  211 (391)
T 1l0q_A          154 VSV--G---RSPKGIAVTPDGTKVYVANF-----------------DSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEG  211 (391)
T ss_dssp             EEC--C---SSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSEEEEEEECTTS
T ss_pred             Eec--C---CCcceEEECCCCCEEEEEeC-----------------CCCEEEEEECCCCeEEEEEecCCCccceEECCCC
Confidence            221  1   3578999999996 666642                 3478999999888766666556678899999999


Q ss_pred             CEEEEEe
Q 030700          164 RFLVVCE  170 (173)
Q Consensus       164 ~~lyv~~  170 (173)
                      ++||++.
T Consensus       212 ~~l~~~~  218 (391)
T 1l0q_A          212 TKAYVTN  218 (391)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            9999986

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.26  E-value=9.3e-10  Score=82.02  Aligned_cols=142  Identities=9%  Similarity=0.056  Sum_probs=94.6

Q ss_pred             CCcceEEEcCCCC-EEEEcCC-CeEEEEcC---CCcEEEe--ccccCccccceEEccCCcEEEEEeCCC-eEEEEcc-CC
Q 030700           10 NHPEDVSVDGNGV-LYTATGD-GWIKRMHP---NGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~-~~i~~~~~---~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g   80 (173)
                      ..|.+++++|+|. ||++..+ +.|..|+.   +|+...+  ......|. +++++++|+.+|++.... .+..++. ++
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCCCCc-EEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            5688999999886 7877754 78887764   3454332  22234788 999999999768887644 3555553 44


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEee------ccc
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVL------DGL  151 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~------~~~  151 (173)
                       ...........  ..+..++++|+|+ +|+++.                 .++.|..||..+ ++.....      ...
T Consensus       117 ~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~-----------------~~~~v~~~d~~~~~~~~~~~~~~~~~~~~  177 (343)
T 1ri6_A          117 LPVGVVDVVEGL--DGCHSANISPDNRTLWVPAL-----------------KQDRICLFTVSDDGHLVAQDPAEVTTVEG  177 (343)
T ss_dssp             EEEEEEEEECCC--TTBCCCEECTTSSEEEEEEG-----------------GGTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             ccccccccccCC--CCceEEEECCCCCEEEEecC-----------------CCCEEEEEEecCCCceeeecccccccCCC
Confidence             22222222221  3588999999996 777752                 235788888765 5543221      223


Q ss_pred             cCcceEEEccCCCEEEEEec
Q 030700          152 YFANGVALSEDERFLVVCES  171 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ..|++++|+|++++||++..
T Consensus       178 ~~~~~~~~~pdg~~l~~~~~  197 (343)
T 1ri6_A          178 AGPRHMVFHPNEQYAYCVNE  197 (343)
T ss_dssp             CCEEEEEECTTSSEEEEEET
T ss_pred             CCcceEEECCCCCEEEEEeC
Confidence            57889999999999998863

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.25  E-value=2.5e-10  Score=84.92  Aligned_cols=134  Identities=13%  Similarity=0.049  Sum_probs=92.3

Q ss_pred             CcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEEEeccccC------ccccceEEccCCcEEEEEe------------C
Q 030700           11 HPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWEDWHQVGS------QSLLGLTTTKENNVIIVCD------------S   69 (173)
Q Consensus        11 ~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~------~p~~gl~~~~~g~l~~v~~------------~   69 (173)
                      .|.+++++|+| .+|++. .++.|+.++. +++.........      .|. +++++++|+.+|++.            .
T Consensus        35 ~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~~~~~~~~~  113 (337)
T 1pby_B           35 TPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEVQ  113 (337)
T ss_dssp             CCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred             CccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccccccc-ceEECCCCCEEEEEeccccccccccccc
Confidence            48999999988 578777 5678999995 555543222222      688 999999998778885            2


Q ss_pred             CCeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           70 QQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        70 ~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      ...+..++. ++ .......  +   ..+.+++++|||+ +|+++                    +.|+.+|.+++++..
T Consensus       114 ~~~i~v~d~~~~~~~~~~~~--~---~~~~~~~~s~dg~~l~~~~--------------------~~i~~~d~~~~~~~~  168 (337)
T 1pby_B          114 PTRVALYDAETLSRRKAFEA--P---RQITMLAWARDGSKLYGLG--------------------RDLHVMDPEAGTLVE  168 (337)
T ss_dssp             CCEEEEEETTTTEEEEEEEC--C---SSCCCEEECTTSSCEEEES--------------------SSEEEEETTTTEEEE
T ss_pred             CceEEEEECCCCcEEEEEeC--C---CCcceeEECCCCCEEEEeC--------------------CeEEEEECCCCcEee
Confidence            356777775 44 2222221  1   3688999999997 77762                    478999998887655


Q ss_pred             eeccccCcceEEEccCCCEEEEEe
Q 030700          147 VLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .......+..++|+||++.||++.
T Consensus       169 ~~~~~~~~~~~~~s~dg~~l~~~~  192 (337)
T 1pby_B          169 DKPIQSWEAETYAQPDVLAVWNQH  192 (337)
T ss_dssp             EECSTTTTTTTBCCCBCCCCCCCC
T ss_pred             eeeccccCCCceeCCCccEEeeec
Confidence            444333344568899988776543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.24  E-value=3.7e-10  Score=90.93  Aligned_cols=142  Identities=11%  Similarity=0.114  Sum_probs=97.6

Q ss_pred             cceEEEcCCC-CEEEEcCCCeEEEEcC---CCcEEEeccccCccccceEEcc----CCcEEEEEeCC-CeEEEEcc-CC-
Q 030700           12 PEDVSVDGNG-VLYTATGDGWIKRMHP---NGTWEDWHQVGSQSLLGLTTTK----ENNVIIVCDSQ-QGLLKVSE-EG-   80 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~~~~~i~~~~~---~g~~~~~~~~~~~p~~gl~~~~----~g~l~~v~~~~-~~i~~~~~-~g-   80 (173)
                      |.+++++|+| .||+++.++.|..||.   +++.......+..|. +++|++    +|+++|+++.. ..+..+|. ++ 
T Consensus       181 ~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~~p~-~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~  259 (543)
T 1nir_A          181 VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLE  259 (543)
T ss_dssp             EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTTCC
T ss_pred             cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCCCcc-eEEeCCCcCCCCCEEEEEEccCCeEEEEeccccc
Confidence            8899999988 6888887799999997   445444334567899 999999    99998998854 45666663 44 


Q ss_pred             -cEEEEec---cCC---ccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE--eecc
Q 030700           81 -VTVLVSQ---FNG---SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL--VLDG  150 (173)
Q Consensus        81 -~~~~~~~---~~~---~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~--~~~~  150 (173)
                       ...+...   .++   .+...+..+++++++. +|++..                 .+++|+.+|..+.+...  ....
T Consensus       260 ~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~-----------------~~g~i~vvd~~~~~~l~~~~i~~  322 (543)
T 1nir_A          260 PKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSIGA  322 (543)
T ss_dssp             EEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECTTSSSCEEEEEEC
T ss_pred             cceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC-----------------CCCeEEEEEecCCCcceeEEecc
Confidence             3333211   111   1123567899999876 555532                 34789999987543211  1223


Q ss_pred             ccCcceEEEccCCCEEEEEec
Q 030700          151 LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...|.+++|+|||+++|++..
T Consensus       323 ~~~~~~~~~spdg~~l~va~~  343 (543)
T 1nir_A          323 APFLHDGGWDSSHRYFMTAAN  343 (543)
T ss_dssp             CSSCCCEEECTTSCEEEEEEG
T ss_pred             CcCccCceECCCCCEEEEEec
Confidence            567899999999999999864

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.23  E-value=7.2e-10  Score=82.91  Aligned_cols=98  Identities=17%  Similarity=0.154  Sum_probs=64.8

Q ss_pred             CcceEEEcCCCC-EEEEc-CCCeEEEEcCC-CcEEEeccc-------cCccccceEEccCCcEEEEEeCC----------
Q 030700           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMHPN-GTWEDWHQV-------GSQSLLGLTTTKENNVIIVCDSQ----------   70 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~-~~~~i~~~~~~-g~~~~~~~~-------~~~p~~gl~~~~~g~l~~v~~~~----------   70 (173)
                      .|.+++++|+|+ +|++. .++.|+.++.+ ++.......       ...+. +++++++|+.+|++...          
T Consensus        44 ~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~~~~  122 (349)
T 1jmx_B           44 GPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMY-SFAISPDGKEVYATVNPTQRLNDHYVV  122 (349)
T ss_dssp             SSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSS-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEccccccccccccc-ceEECCCCCEEEEEccccccccccccc
Confidence            589999999885 78776 67889999964 554432222       22378 99999999987887633          


Q ss_pred             --CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           71 --QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        71 --~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                        ..+..++. ++ ...........  ..+..++++|||++|++.
T Consensus       123 ~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~~~s~dg~l~~~~  165 (349)
T 1jmx_B          123 KPPRLEVFSTADGLEAKPVRTFPMP--RQVYLMRAADDGSLYVAG  165 (349)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEECC--SSCCCEEECTTSCEEEES
T ss_pred             CCCeEEEEECCCccccceeeeccCC--CcccceeECCCCcEEEcc
Confidence              45777773 43 21111111111  257889999999987753

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.23  E-value=1.5e-09  Score=83.88  Aligned_cols=139  Identities=13%  Similarity=0.065  Sum_probs=100.3

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC--------CCeEEEEcc
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS--------QQGLLKVSE   78 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~--------~~~i~~~~~   78 (173)
                      ..+.+++++|+|. +|++. .++.|+.||. +++..........+. +++++++|+.++++..        ...+..++.
T Consensus       212 ~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~  290 (433)
T 3bws_A          212 KWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGLPR-GLLLSKDGKELYIAQFSASNQESGGGRLGIYSM  290 (433)
T ss_dssp             SSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSEEE-EEEECTTSSEEEEEEEESCTTCSCCEEEEEEET
T ss_pred             CCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCCce-EEEEcCCCCEEEEEECCCCccccCCCeEEEEEC
Confidence            5688999999875 66776 6789999996 555554444456688 9999999988677763        224556664


Q ss_pred             -CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcc
Q 030700           79 -EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN  155 (173)
Q Consensus        79 -~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~  155 (173)
                       ++ ....... .    ..+..++++|+|+ +|++..                 .++.|..+|.++++..........+.
T Consensus       291 ~~~~~~~~~~~-~----~~~~~~~~~~~g~~l~~~~~-----------------~~~~v~v~d~~~~~~~~~~~~~~~~~  348 (433)
T 3bws_A          291 DKEKLIDTIGP-P----GNKRHIVSGNTENKIYVSDM-----------------CCSKIEVYDLKEKKVQKSIPVFDKPN  348 (433)
T ss_dssp             TTTEEEEEEEE-E----ECEEEEEECSSTTEEEEEET-----------------TTTEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CCCcEEeeccC-C----CCcceEEECCCCCEEEEEec-----------------CCCEEEEEECCCCcEEEEecCCCCCC
Confidence             45 2222211 1    2567899999995 777743                 34789999998887666655567789


Q ss_pred             eEEEccCCCEEEEEec
Q 030700          156 GVALSEDERFLVVCES  171 (173)
Q Consensus       156 gi~~~~dg~~lyv~~~  171 (173)
                      +++|+|+++.||++..
T Consensus       349 ~~~~s~dg~~l~~~~~  364 (433)
T 3bws_A          349 TIALSPDGKYLYVSCR  364 (433)
T ss_dssp             EEEECTTSSEEEEEEC
T ss_pred             eEEEcCCCCEEEEEec
Confidence            9999999999999864

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.22  E-value=8.8e-10  Score=82.16  Aligned_cols=143  Identities=13%  Similarity=0.170  Sum_probs=91.2

Q ss_pred             CcceEEEcCCCC-EEEEc-CCCeEEEEcC-CCc---EEEeccccCccccceEEccCCcEEEEEe-CCCeEEEEcc--CC-
Q 030700           11 HPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGT---WEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVSE--EG-   80 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-~g~---~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~~i~~~~~--~g-   80 (173)
                      .|.+++++|+|. ||++. .++.|..|+. +|.   ..........+. +++++++|+.+|++. ....+..++.  ++ 
T Consensus        85 ~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~  163 (343)
T 1ri6_A           85 SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCH-SANISPDNRTLWVPALKQDRICLFTVSDDGH  163 (343)
T ss_dssp             CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBC-CCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccCCCCce-EEEECCCCCEEEEecCCCCEEEEEEecCCCc
Confidence            789999999886 77777 4677888875 443   222233445688 999999998778887 3345666553  36 


Q ss_pred             cEEEEe-ccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCC--CCeeEEee--c----c
Q 030700           81 VTVLVS-QFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS--TNQTSLVL--D----G  150 (173)
Q Consensus        81 ~~~~~~-~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~--~~~~~~~~--~----~  150 (173)
                      ...... .........|..++++|+|+ +|+++..                 ++.+..++.+  +++.....  .    +
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~-----------------~~~i~~~~~~~~~g~~~~~~~~~~~~~~  226 (343)
T 1ri6_A          164 LVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL-----------------NSSVDVWELKDPHGNIECVQTLDMMPEN  226 (343)
T ss_dssp             EEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEESSCTTSCCEEEEEEECSCTT
T ss_pred             eeeecccccccCCCCCcceEEECCCCCEEEEEeCC-----------------CCEEEEEEecCCCCcEEEEeeccccCcc
Confidence            433220 11111124678899999997 7777532                 2567777763  34432211  1    1


Q ss_pred             ---ccCcceEEEccCCCEEEEEec
Q 030700          151 ---LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 ---~~~p~gi~~~~dg~~lyv~~~  171 (173)
                         ...+.+++|+||+++||++..
T Consensus       227 ~~~~~~~~~i~~s~dg~~l~v~~~  250 (343)
T 1ri6_A          227 FSDTRWAADIHITPDGRHLYACDR  250 (343)
T ss_dssp             CCSCCCEEEEEECTTSSEEEEEET
T ss_pred             ccccCCccceEECCCCCEEEEEec
Confidence               234557999999999998764

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.20  E-value=2.2e-09  Score=82.95  Aligned_cols=153  Identities=20%  Similarity=0.237  Sum_probs=102.8

Q ss_pred             CCcceEEEcCCC-CEEEEc--------CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEcc
Q 030700           10 NHPEDVSVDGNG-VLYTAT--------GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE   78 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~--------~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~   78 (173)
                      ..|.+++++|+| .+|++.        .++.|+.|+. +++..........+. +++++++++.+|++.... .+..++.
T Consensus       254 ~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~g~~l~~~~~~~~~v~v~d~  332 (433)
T 3bws_A          254 GLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKR-HIVSGNTENKIYVSDMCCSKIEVYDL  332 (433)
T ss_dssp             SEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEE-EEEECSSTTEEEEEETTTTEEEEEET
T ss_pred             CCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcc-eEEECCCCCEEEEEecCCCEEEEEEC
Confidence            358899999988 566665        2678999995 455544444455788 999999997658876554 4666664


Q ss_pred             -CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcc
Q 030700           79 -EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFAN  155 (173)
Q Consensus        79 -~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~  155 (173)
                       ++ .......     ...+..++++|+|+ +|++...... .  ....+.....+|.|+.+|..+++..........+.
T Consensus       333 ~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~~~~~~~-~--~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~~~~~  404 (433)
T 3bws_A          333 KEKKVQKSIPV-----FDKPNTIALSPDGKYLYVSCRGPNH-P--TEGYLKKGLVLGKVYVIDTTTDTVKEFWEAGNQPT  404 (433)
T ss_dssp             TTTEEEEEEEC-----SSSEEEEEECTTSSEEEEEECCCCC-T--TTCTTSCCSSCCEEEEEETTTTEEEEEEECSSSEE
T ss_pred             CCCcEEEEecC-----CCCCCeEEEcCCCCEEEEEecCCCc-c--ccccccccccceEEEEEECCCCcEEEEecCCCCCc
Confidence             44 2222221     14678999999997 6776543110 0  00111223446799999998887766665567789


Q ss_pred             eEEEccCCCEEEEEec
Q 030700          156 GVALSEDERFLVVCES  171 (173)
Q Consensus       156 gi~~~~dg~~lyv~~~  171 (173)
                      +++|+|||++||++..
T Consensus       405 ~~~~s~dg~~l~~~~~  420 (433)
T 3bws_A          405 GLDVSPDNRYLVISDF  420 (433)
T ss_dssp             EEEECTTSCEEEEEET
T ss_pred             eEEEcCCCCEEEEEEC
Confidence            9999999999998753

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.20  E-value=1.2e-09  Score=85.49  Aligned_cols=67  Identities=12%  Similarity=0.078  Sum_probs=49.7

Q ss_pred             CCcceEEEcCCC-CEEEEcC----------CCeEEEEcC-CCcEEEeccc--------cCccccceEEccCCcEEEEEeC
Q 030700           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMHP-NGTWEDWHQV--------GSQSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~----------~~~i~~~~~-~g~~~~~~~~--------~~~p~~gl~~~~~g~l~~v~~~   69 (173)
                      ..| +++++|+| .||+++.          ++.|..+|. +++.......        ...|. ++++++||+.+|+++.
T Consensus       119 ~~P-gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~-~~~~spDGk~lyV~n~  196 (426)
T 3c75_H          119 FLP-HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQW-MNALTPDNKNLLFYQF  196 (426)
T ss_dssp             SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGG-GSEECTTSSEEEEEEC
T ss_pred             CCC-ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcc-eEEEcCCCCEEEEEec
Confidence            358 99999987 6999872          457999995 4555433222        35799 9999999999899985


Q ss_pred             C--CeEEEEcc
Q 030700           70 Q--QGLLKVSE   78 (173)
Q Consensus        70 ~--~~i~~~~~   78 (173)
                      .  +.+..+|.
T Consensus       197 ~~~~~VsVID~  207 (426)
T 3c75_H          197 SPAPAVGVVDL  207 (426)
T ss_dssp             SSSCEEEEEET
T ss_pred             CCCCeEEEEEC
Confidence            3  46777774

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=99.18  E-value=1.6e-09  Score=81.68  Aligned_cols=143  Identities=13%  Similarity=0.086  Sum_probs=94.6

Q ss_pred             CCcceEEE---cCCCCEEEE-cC-------------CCeEEEEcCC----CcEEEecc--------------ccCccccc
Q 030700           10 NHPEDVSV---DGNGVLYTA-TG-------------DGWIKRMHPN----GTWEDWHQ--------------VGSQSLLG   54 (173)
Q Consensus        10 ~~p~~l~~---~~~g~l~~~-~~-------------~~~i~~~~~~----g~~~~~~~--------------~~~~p~~g   54 (173)
                      ..|.||.+   |++|+||+. +.             ...|+++|.+    |+.....+              ....++ +
T Consensus        63 ~~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~n-D  141 (334)
T 2p9w_A           63 QQMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVV-Q  141 (334)
T ss_dssp             EEEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEE-E
T ss_pred             ceeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCc-e
Confidence            35789999   789999974 31             4679999966    65432221              113578 9


Q ss_pred             eEEccCCcEEEEEeC-C-CeEEEEccCC--cEEEEecc-CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccC
Q 030700           55 LTTTKENNVIIVCDS-Q-QGLLKVSEEG--VTVLVSQF-NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGE  129 (173)
Q Consensus        55 l~~~~~g~l~~v~~~-~-~~i~~~~~~g--~~~~~~~~-~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~  129 (173)
                      +++|++|+. ||++. . ..|++++++|  ...+.... .......+++|+++|+|+++++..                .
T Consensus       142 vavD~~Gna-YVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~----------------~  204 (334)
T 2p9w_A          142 SAQDRDGNS-YVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFG----------------G  204 (334)
T ss_dssp             EEECTTSCE-EEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEES----------------S
T ss_pred             eEECCCCCE-EEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEc----------------C
Confidence            999999999 99764 3 5699999998  34333211 122235689999999997555431                1


Q ss_pred             CCceEEEEcCCCCee--EEee--c---cccCcceE-EEccCCCEEEEEec
Q 030700          130 PHGVLLKYDPSTNQT--SLVL--D---GLYFANGV-ALSEDERFLVVCES  171 (173)
Q Consensus       130 ~~~~v~~~d~~~~~~--~~~~--~---~~~~p~gi-~~~~dg~~lyv~~~  171 (173)
                       .++|++||..+-..  ..+.  .   .+..|.+| +.-.+|+.|+|++.
T Consensus       205 -~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~  253 (334)
T 2p9w_A          205 -PRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGAR  253 (334)
T ss_dssp             -SSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEE
T ss_pred             -CCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcC
Confidence             37999999863211  1111  1   35678886 44458888899874

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.17  E-value=2.7e-09  Score=80.83  Aligned_cols=143  Identities=15%  Similarity=0.248  Sum_probs=88.3

Q ss_pred             cCCcceEEEcCCCC-EEEEcCC----CeEE--EEcCC-CcEEEecc---ccCccccceEEccCCcEEEEEeCCC-eEEEE
Q 030700            9 VNHPEDVSVDGNGV-LYTATGD----GWIK--RMHPN-GTWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQQ-GLLKV   76 (173)
Q Consensus         9 ~~~p~~l~~~~~g~-l~~~~~~----~~i~--~~~~~-g~~~~~~~---~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~   76 (173)
                      ...|.+++++|+|+ ||++..+    +.|.  .++.+ |++..+..   ....|. ++++  +++.+|+++... .+..+
T Consensus        49 ~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~-~~~~--dg~~l~~~~~~~~~v~~~  125 (361)
T 3scy_A           49 VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPC-YLTT--NGKNIVTANYSGGSITVF  125 (361)
T ss_dssp             CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEE-EEEE--CSSEEEEEETTTTEEEEE
T ss_pred             CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcE-EEEE--CCCEEEEEECCCCEEEEE
Confidence            46799999999985 7877653    5664  45554 65544322   345788 8888  777768888654 34444


Q ss_pred             c--cCC-cEEEEe--ccCC-------ccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceE--EEEcCCC
Q 030700           77 S--EEG-VTVLVS--QFNG-------SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVL--LKYDPST  141 (173)
Q Consensus        77 ~--~~g-~~~~~~--~~~~-------~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~~~  141 (173)
                      +  .++ ...+..  ...+       +...+++.++++|||+ +|+++..                 ++.+  |.++..+
T Consensus       126 ~~~~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~-----------------~~~v~v~~~~~~~  188 (361)
T 3scy_A          126 PIGQDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLG-----------------TDQIHKFNINPNA  188 (361)
T ss_dssp             EBCTTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECTTC
T ss_pred             EeCCCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCC-----------------CCEEEEEEEcCCC
Confidence            4  344 221111  0111       1123568899999997 8888642                 2344  4455554


Q ss_pred             C----e-e-------EEeeccccCcceEEEccCCCEEEEEec
Q 030700          142 N----Q-T-------SLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       142 ~----~-~-------~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      +    + +       .........|++++|+|||++||+++.
T Consensus       189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~  230 (361)
T 3scy_A          189 NADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE  230 (361)
T ss_dssp             CTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred             CcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence            3    2 2       122233567889999999999999873

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.17  E-value=3.4e-09  Score=78.72  Aligned_cols=135  Identities=10%  Similarity=0.042  Sum_probs=87.6

Q ss_pred             EEcCCCeEEEEcC-CCcEEEeccccC---ccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-c-EEEEeccCCccccCC
Q 030700           25 TATGDGWIKRMHP-NGTWEDWHQVGS---QSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-V-TVLVSQFNGSQLRFA   96 (173)
Q Consensus        25 ~~~~~~~i~~~~~-~g~~~~~~~~~~---~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~-~~~~~~~~~~~~~~~   96 (173)
                      +...++.|..+|. +++.........   .|. +++++++|+.+|++... ..+..++. ++ . ..+.....+.....|
T Consensus         6 ~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~   84 (337)
T 1pby_B            6 APARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSL   84 (337)
T ss_dssp             EEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECT
T ss_pred             EcCCCCeEEEEECCCCcEEEEEEcCCCCCCcc-ceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccc
Confidence            3447788999986 455444333344   588 99999999876888765 45777775 55 3 223211111011268


Q ss_pred             ccEEEcCCCc-EEEEeCcCCcCcccceeeecccC---CCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700           97 NDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGE---PHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus        97 ~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .+++++|||+ +|+++.....         ....   .++.|+.+|.++++..........|.+++|+||+++||++
T Consensus        85 ~~~~~s~dg~~l~~~~~~~~~---------~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  152 (337)
T 1pby_B           85 FGAALSPDGKTLAIYESPVRL---------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             TCEEECTTSSEEEEEEEEEEE---------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE
T ss_pred             cceEECCCCCEEEEEeccccc---------ccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe
Confidence            8999999995 7777421000         0000   2368999999888765555445678999999999999987

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.14  E-value=4.9e-09  Score=80.13  Aligned_cols=67  Identities=16%  Similarity=0.140  Sum_probs=46.6

Q ss_pred             CCcceEEEcCCC-CEEEEcC----------CCeEEEEcCC-CcEEEecc-------ccCccccceEEccCCcEEEEEeCC
Q 030700           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMHPN-GTWEDWHQ-------VGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~----------~~~i~~~~~~-g~~~~~~~-------~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ..| +++++|+| .+|++..          ++.|..+|.. ++......       ....|. ++++++||++||+++..
T Consensus        51 ~~p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~-~i~~spdg~~l~v~n~~  128 (361)
T 2oiz_A           51 FNG-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDG-LFRQTTDGKFIVLQNAS  128 (361)
T ss_dssp             EEE-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGG-GEEECTTSSEEEEEEES
T ss_pred             CCC-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcc-eEEECCCCCEEEEECCC
Confidence            357 99999988 6888762          3458899853 44432222       235799 99999999998999854


Q ss_pred             --CeEEEEcc
Q 030700           71 --QGLLKVSE   78 (173)
Q Consensus        71 --~~i~~~~~   78 (173)
                        +.+..++.
T Consensus       129 ~~~~v~v~d~  138 (361)
T 2oiz_A          129 PATSIGIVDV  138 (361)
T ss_dssp             SSEEEEEEET
T ss_pred             CCCeEEEEEC
Confidence              34555553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.13  E-value=1.9e-09  Score=80.60  Aligned_cols=149  Identities=12%  Similarity=0.027  Sum_probs=91.4

Q ss_pred             ceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccC--ccccceEEccCCcEEEEEeCC-CeEEEEcc-CC-cEEEE
Q 030700           13 EDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGS--QSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG-VTVLV   85 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g-~~~~~   85 (173)
                      .|+++.+++.+|++. .++.|+.+|. +++.........  .|. +++++++|+.+|++... ..+..++. ++ .....
T Consensus         3 ~g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~   81 (349)
T 1jmx_B            3 TGPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHA   81 (349)
T ss_dssp             -CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             ccccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCc-eeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEE
Confidence            467778888999877 7889999996 455443333334  688 99999999876888755 45777775 45 32222


Q ss_pred             eccC--CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE---EeeccccCcceEEE
Q 030700           86 SQFN--GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS---LVLDGLYFANGVAL  159 (173)
Q Consensus        86 ~~~~--~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~p~gi~~  159 (173)
                      ....  +.....+.+++++|||+ +|++..........+      ....+.|+.+|.++++..   ........+.+++|
T Consensus        82 ~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~------~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~  155 (349)
T 1jmx_B           82 NLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRA  155 (349)
T ss_dssp             ESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCE------EECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEE
T ss_pred             EcccccccccccccceEECCCCCEEEEEccccccccccc------ccCCCeEEEEECCCccccceeeeccCCCcccceeE
Confidence            2111  00123589999999996 666642100000000      001368999998764321   12222345778999


Q ss_pred             ccCCCEEEEE
Q 030700          160 SEDERFLVVC  169 (173)
Q Consensus       160 ~~dg~~lyv~  169 (173)
                      +|||+ +|++
T Consensus       156 s~dg~-l~~~  164 (349)
T 1jmx_B          156 ADDGS-LYVA  164 (349)
T ss_dssp             CTTSC-EEEE
T ss_pred             CCCCc-EEEc
Confidence            99999 8875

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.12  E-value=1.2e-08  Score=78.55  Aligned_cols=68  Identities=15%  Similarity=0.084  Sum_probs=48.2

Q ss_pred             CCcceEEEcCCC-CEEEEcC----------CCeEEEEcCC-CcEEEeccc--------cCccccceEEccCCcEEEEEeC
Q 030700           10 NHPEDVSVDGNG-VLYTATG----------DGWIKRMHPN-GTWEDWHQV--------GSQSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~----------~~~i~~~~~~-g~~~~~~~~--------~~~p~~gl~~~~~g~l~~v~~~   69 (173)
                      ..| +++++|+| .||+++.          ++.|..+|.. ++.......        ...|. ++++++||+.||+++.
T Consensus        67 ~~p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~-~~~~spDG~~l~v~n~  144 (373)
T 2mad_H           67 FLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSW-MNANTPNNADLLFFQF  144 (373)
T ss_pred             CCC-CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCcc-ceEECCCCCEEEEEec
Confidence            357 99999988 6998862          3568899863 443332222        24689 9999999999899875


Q ss_pred             C--CeEEEEccCC
Q 030700           70 Q--QGLLKVSEEG   80 (173)
Q Consensus        70 ~--~~i~~~~~~g   80 (173)
                      .  +.+..+| ..
T Consensus       145 ~~~~~v~viD-~t  156 (373)
T 2mad_H          145 AAGPAVGLVV-QG  156 (373)
T ss_pred             CCCCeEEEEE-CC
Confidence            3  5577777 43

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.11  E-value=5.4e-09  Score=84.63  Aligned_cols=145  Identities=11%  Similarity=0.132  Sum_probs=96.5

Q ss_pred             CCcceEEEcCCC-CEEEEcCCCeEEEEcC---CCcEEEeccccCccccceEEc----cCCcEEEEEeCC-CeEEEEcc-C
Q 030700           10 NHPEDVSVDGNG-VLYTATGDGWIKRMHP---NGTWEDWHQVGSQSLLGLTTT----KENNVIIVCDSQ-QGLLKVSE-E   79 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~~~~~i~~~~~---~g~~~~~~~~~~~p~~gl~~~----~~g~l~~v~~~~-~~i~~~~~-~   79 (173)
                      ..|++++++|+| .+|+++.++.|..+|.   +++...-...+..|. +++++    +||+++|+++.. +.+..+|. +
T Consensus       197 ~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~-~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t  275 (567)
T 1qks_A          197 YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQYVIMDGET  275 (567)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEEEEEETTT
T ss_pred             CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc-eeEEccccCCCCCEEEEEEccCCeEEEEECCC
Confidence            468899999988 5888888889999997   455554445567899 99999    699988998866 45666664 3


Q ss_pred             C--cEEEEec---cCC---ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe--ec
Q 030700           80 G--VTVLVSQ---FNG---SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV--LD  149 (173)
Q Consensus        80 g--~~~~~~~---~~~---~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~--~~  149 (173)
                      .  +..+...   .++   .+..++..+..++++..|+.+.                ...|.|+.+|....+...+  ..
T Consensus       276 ~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~----------------~~~g~v~~vd~~~~~~~~v~~i~  339 (567)
T 1qks_A          276 LEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV----------------KETGKILLVDYTDLNNLKTTEIS  339 (567)
T ss_dssp             CCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE----------------TTTTEEEEEETTCSSEEEEEEEE
T ss_pred             CcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe----------------cCCCeEEEEecCCCccceeeeee
Confidence            3  3332211   111   0112445777788765444421                1347899998764321111  12


Q ss_pred             cccCcceEEEccCCCEEEEEec
Q 030700          150 GLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ....+.++.|+|||+++|++..
T Consensus       340 ~~~~~~d~~~~pdgr~~~va~~  361 (567)
T 1qks_A          340 AERFLHDGGLDGSHRYFITAAN  361 (567)
T ss_dssp             CCSSEEEEEECTTSCEEEEEEG
T ss_pred             ccccccCceECCCCCEEEEEeC
Confidence            2457889999999999999874

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.10  E-value=5.1e-09  Score=80.81  Aligned_cols=135  Identities=12%  Similarity=0.006  Sum_probs=90.1

Q ss_pred             EcCCC-CEEEEcC-----CCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC----------CCeEEEEcc-
Q 030700           17 VDGNG-VLYTATG-----DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS----------QQGLLKVSE-   78 (173)
Q Consensus        17 ~~~~g-~l~~~~~-----~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~----------~~~i~~~~~-   78 (173)
                      ..|++ .+|+++.     .+.|+.+|. +++.....+.+..|  ++++++||+.+|+++.          .+.+..+|. 
T Consensus        40 ~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~  117 (386)
T 3sjl_D           40 PAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPV  117 (386)
T ss_dssp             CCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTT
T ss_pred             cCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEECC
Confidence            34566 7999984     578999996 45555544556667  5999999998899974          234677775 


Q ss_pred             CC--cEEEEeccCCc---cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--
Q 030700           79 EG--VTVLVSQFNGS---QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--  150 (173)
Q Consensus        79 ~g--~~~~~~~~~~~---~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--  150 (173)
                      ++  ...+.. ..++   ....|.+++++|||+ +|+++..                .++.|..+|.+++++......  
T Consensus       118 t~~v~~~I~v-~~g~r~~~g~~P~~~a~spDGk~lyVan~~----------------~~~~VsVID~~t~~vv~tI~v~g  180 (386)
T 3sjl_D          118 TLLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRMLDVPD  180 (386)
T ss_dssp             TCCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCS
T ss_pred             CCeEEEEEEC-CCccccccCCCCceEEEcCCCCEEEEEEcC----------------CCCeEEEEECCCCcEEEEEECCC
Confidence            44  333321 1111   124799999999996 8988632                236888999988875433321  


Q ss_pred             --ccCcce----EEEccCCCEEEEEe
Q 030700          151 --LYFANG----VALSEDERFLVVCE  170 (173)
Q Consensus       151 --~~~p~g----i~~~~dg~~lyv~~  170 (173)
                        ...|.|    +++++||+.+||+-
T Consensus       181 ~~~~~P~g~~~~~~~~~DG~~~~v~~  206 (386)
T 3sjl_D          181 CYHIFPTAPDTFFMHCRDGSLAKVAF  206 (386)
T ss_dssp             EEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             cceeecCCCceeEEECCCCCEEEEEC
Confidence              223555    48889999888864

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.07  E-value=3.7e-08  Score=71.97  Aligned_cols=141  Identities=13%  Similarity=0.131  Sum_probs=90.2

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEc--CCCcEE--Eecc-c-cC-----ccccceEEccCCcEEEEEeCC-C-eEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMH--PNGTWE--DWHQ-V-GS-----QSLLGLTTTKENNVIIVCDSQ-Q-GLL   74 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~--~~g~~~--~~~~-~-~~-----~p~~gl~~~~~g~l~~v~~~~-~-~i~   74 (173)
                      ...+|||+++++|.+|+++ .+++++.++  .++...  .... . ..     ... ||+++++++.||++... . .++
T Consensus        69 ~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~E-GLA~d~~~~~L~va~E~~p~~i~  147 (255)
T 3qqz_A           69 VKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFE-GLAYSRQDHTFWFFKEKNPIEVY  147 (255)
T ss_dssp             CSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCE-EEEEETTTTEEEEEEESSSEEEE
T ss_pred             CCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcc-eEEEeCCCCEEEEEECcCCceEE
Confidence            5779999999999888877 667887765  445321  1111 1 11     238 99999988555776644 3 677


Q ss_pred             EEc--cCC--cEEEEec-c-CCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe
Q 030700           75 KVS--EEG--VTVLVSQ-F-NGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (173)
Q Consensus        75 ~~~--~~g--~~~~~~~-~-~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  147 (173)
                      .++  ..+  ...+... . .......+.++++|| .|++|+...                 .+..|..+|+++. +...
T Consensus       148 ~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~-----------------~s~~L~~~d~~g~-~~~~  209 (255)
T 3qqz_A          148 KVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSH-----------------ESRALQEVTLVGE-VIGE  209 (255)
T ss_dssp             EEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEET-----------------TTTEEEEECTTCC-EEEE
T ss_pred             EEcccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEEC-----------------CCCeEEEEcCCCC-EEEE
Confidence            776  222  3333210 0 111234689999999 578888753                 2368899998744 3322


Q ss_pred             e---cc-------ccCcceEEEccCCCEEEEE
Q 030700          148 L---DG-------LYFANGVALSEDERFLVVC  169 (173)
Q Consensus       148 ~---~~-------~~~p~gi~~~~dg~~lyv~  169 (173)
                      .   .+       ++.|.||||+++|+ |||+
T Consensus       210 ~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIv  240 (255)
T 3qqz_A          210 MSLTKGSRGLSHNIKQAEGVAMDASGN-IYIV  240 (255)
T ss_dssp             EECSTTGGGCSSCCCSEEEEEECTTCC-EEEE
T ss_pred             EEcCCccCCcccccCCCCeeEECCCCC-EEEE
Confidence            2   11       36899999999997 7775

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.06  E-value=2.6e-08  Score=77.98  Aligned_cols=142  Identities=15%  Similarity=0.063  Sum_probs=87.8

Q ss_pred             cceEEEcCCCCEE-EEc-------------------CCCeEEEEcCC-CcEEEeccc---cCccccceEE--ccCCcEEE
Q 030700           12 PEDVSVDGNGVLY-TAT-------------------GDGWIKRMHPN-GTWEDWHQV---GSQSLLGLTT--TKENNVII   65 (173)
Q Consensus        12 p~~l~~~~~g~l~-~~~-------------------~~~~i~~~~~~-g~~~~~~~~---~~~p~~gl~~--~~~g~l~~   65 (173)
                      +-++.+.|+++++ +++                   ...+|..||.+ ++.....+.   +..|. +|.|  +++++.+|
T Consensus       190 ~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~-~i~f~~~Pdg~~aY  268 (462)
T 2ece_A          190 AYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMAL-ELRPLHDPTKLMGF  268 (462)
T ss_dssp             CCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEE-EEEECSSTTCCEEE
T ss_pred             cceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccc-eeEeeECCCCCEEE
Confidence            3347778988655 443                   15789999864 443332232   24687 8877  99999989


Q ss_pred             EEeC-----CC-eEEEEcc-CC-cE--EEEeccC----Cc----c------ccCCccEEEcCCCc-EEEEeCcCCcCccc
Q 030700           66 VCDS-----QQ-GLLKVSE-EG-VT--VLVSQFN----GS----Q------LRFANDVIEASDGS-LYFTVSSTKFTPAE  120 (173)
Q Consensus        66 v~~~-----~~-~i~~~~~-~g-~~--~~~~~~~----~~----~------~~~~~~l~~~~dG~-~~v~~~~~~~~~~~  120 (173)
                      ++..     .+ .++.+.. +| .+  ...+...    +.    +      ...|.+|.+++||+ +|+++..       
T Consensus       269 V~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg-------  341 (462)
T 2ece_A          269 INMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG-------  341 (462)
T ss_dssp             EEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT-------
T ss_pred             EEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC-------
Confidence            8775     43 4554442 35 22  2221111    10    0      25689999999997 8998643       


Q ss_pred             ceeeecccCCCceEEEEcCC-CCeeEEe---eccc--------------cCcceEEEccCCCEEEEEec
Q 030700          121 YYLDLVSGEPHGVLLKYDPS-TNQTSLV---LDGL--------------YFANGVALSEDERFLVVCES  171 (173)
Q Consensus       121 ~~~~~~~~~~~~~v~~~d~~-~~~~~~~---~~~~--------------~~p~gi~~~~dg~~lyv~~~  171 (173)
                                .+.|..||.. .++.+++   ..+.              ..|.++++||||++|||+++
T Consensus       342 ----------~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaNs  400 (462)
T 2ece_A          342 ----------IGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTNS  400 (462)
T ss_dssp             ----------TTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEECC
T ss_pred             ----------CCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEcC
Confidence                      2567666642 2222222   2221              25999999999999999984

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.05  E-value=6.3e-08  Score=71.42  Aligned_cols=137  Identities=11%  Similarity=0.013  Sum_probs=92.2

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEecccc--CccccceEEccCCcEEEEEeCC--CeEEEEccCC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVG--SQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g--~~~   83 (173)
                      ..+.+++++|+|++|++ .++.|+.+|++|+..--....  .... ++.+.++|++ ++++..  ..++.++++|  +..
T Consensus        37 ~~~~~~~~~pdG~ilvs-~~~~V~~~d~~G~~~W~~~~~~~~~~~-~~~~~~dG~~-lv~~~~~~~~v~~vd~~Gk~l~~  113 (276)
T 3no2_A           37 WECNSVAATKAGEILFS-YSKGAKMITRDGRELWNIAAPAGCEMQ-TARILPDGNA-LVAWCGHPSTILEVNMKGEVLSK  113 (276)
T ss_dssp             CCCCEEEECTTSCEEEE-CBSEEEEECTTSCEEEEEECCTTCEEE-EEEECTTSCE-EEEEESTTEEEEEECTTSCEEEE
T ss_pred             CCCcCeEECCCCCEEEe-CCCCEEEECCCCCEEEEEcCCCCcccc-ccEECCCCCE-EEEecCCCCEEEEEeCCCCEEEE
Confidence            35889999999999995 467899999988754322222  2456 7888999999 666544  4577788888  333


Q ss_pred             EEeccC-CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFN-GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~-~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      +..... ..+...+..++..++|++++++..                 +++|+.+|++ |+..--......|.++.+.++
T Consensus       114 ~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~-----------------~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~  175 (276)
T 3no2_A          114 TEFETGIERPHAQFRQINKNKKGNYLVPLFA-----------------TSEVREIAPN-GQLLNSVKLSGTPFSSAFLDN  175 (276)
T ss_dssp             EEECCSCSSGGGSCSCCEECTTSCEEEEETT-----------------TTEEEEECTT-SCEEEEEECSSCCCEEEECTT
T ss_pred             EeccCCCCcccccccCceECCCCCEEEEecC-----------------CCEEEEECCC-CCEEEEEECCCCccceeEcCC
Confidence            321111 122346788899999999998643                 3689999998 654222222346777888888


Q ss_pred             CCEEE
Q 030700          163 ERFLV  167 (173)
Q Consensus       163 g~~ly  167 (173)
                      |+.++
T Consensus       176 g~~~v  180 (276)
T 3no2_A          176 GDCLV  180 (276)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            77444

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=99.03  E-value=1.8e-08  Score=76.71  Aligned_cols=143  Identities=17%  Similarity=0.162  Sum_probs=93.3

Q ss_pred             cCCcceEEEcCCCCEEEEc--------------CCCeEEEEcCCCcE---------EEeccccCccccceEEccCCcEEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT--------------GDGWIKRMHPNGTW---------EDWHQVGSQSLLGLTTTKENNVII   65 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~--------------~~~~i~~~~~~g~~---------~~~~~~~~~p~~gl~~~~~g~l~~   65 (173)
                      ......|+++|+|.||++.              ..++|+|++++|++         +.+......|. |++++++|++ |
T Consensus       139 ~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nPf~~~~i~a~G~RNp~-Gla~dp~G~L-~  216 (347)
T 3das_A          139 IHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNPFPGSPVYSYGHRNVQ-GLAWDDKQRL-F  216 (347)
T ss_dssp             SCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCSSTTCCEEEBCCSBCC-EEEECTTCCE-E
T ss_pred             CccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCCCCCCeEEeeCCCCcc-eEEECCCCCE-E
Confidence            3456679999999999985              24899999998863         23333445799 9999999998 9


Q ss_pred             EEeCCC----eEEEEccCC-c--EEEEec--cCC--cc-------ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecc
Q 030700           66 VCDSQQ----GLLKVSEEG-V--TVLVSQ--FNG--SQ-------LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVS  127 (173)
Q Consensus        66 v~~~~~----~i~~~~~~g-~--~~~~~~--~~~--~~-------~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~  127 (173)
                      +++.+.    .+.++.+.+ -  ......  ..+  .|       ...|.+|++. +|.+|++...              
T Consensus       217 ~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~-~g~~~~~~l~--------------  281 (347)
T 3das_A          217 ASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYA-EGSVWMAGLR--------------  281 (347)
T ss_dssp             EEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEE-TTEEEEEEST--------------
T ss_pred             EEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEE-cCceeecccc--------------
Confidence            998653    355443321 0  000000  000  01       1367889988 5889998643              


Q ss_pred             cCCCceEEEEcCCCCe----eEEeecc-ccCcceEEEccCCCEEEEEecC
Q 030700          128 GEPHGVLLKYDPSTNQ----TSLVLDG-LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       128 ~~~~~~v~~~d~~~~~----~~~~~~~-~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                         .++|+++..+...    .+.+..+ ...|.+|++.||| .|||++.+
T Consensus       282 ---~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG-~lyv~td~  327 (347)
T 3das_A          282 ---GERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGD-KLWLVTSN  327 (347)
T ss_dssp             ---TCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETT-EEEEEECT
T ss_pred             ---CCEEEEEEecCCceecceEEeecCCCCCccEEEECCCC-cEEEEEcC
Confidence               2478777765332    2444443 5678999999999 58998754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.03  E-value=1.3e-08  Score=79.60  Aligned_cols=133  Identities=11%  Similarity=-0.024  Sum_probs=88.3

Q ss_pred             CC-CEEEEcCC-----CeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC----------CCeEEEEcc-CC-
Q 030700           20 NG-VLYTATGD-----GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS----------QQGLLKVSE-EG-   80 (173)
Q Consensus        20 ~g-~l~~~~~~-----~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~----------~~~i~~~~~-~g-   80 (173)
                      ++ ++|+++..     +.|..+|. ++++....+.+..|  |+++++||+.+|+++.          .+.+..+|. ++ 
T Consensus        83 ~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~  160 (426)
T 3c75_H           83 DARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFL  160 (426)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCC
T ss_pred             CCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCc
Confidence            54 69998842     68999996 45555544556667  8999999998899984          235777775 44 


Q ss_pred             -cEEEEeccCCc--cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc----cc
Q 030700           81 -VTVLVSQFNGS--QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG----LY  152 (173)
Q Consensus        81 -~~~~~~~~~~~--~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----~~  152 (173)
                       ...+.......  ....|.+++++|||+ +|+++..                ..+.|..+|+.++++......    ..
T Consensus       161 vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~----------------~~~~VsVID~~t~kvv~~I~v~g~~~~  224 (426)
T 3c75_H          161 PIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS----------------PAPAVGVVDLEGKTFDRMLDVPDCYHI  224 (426)
T ss_dssp             EEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEEEECCSEEEE
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC----------------CCCeEEEEECCCCeEEEEEEcCCceee
Confidence             33332110000  124799999999995 8988532                236899999988765433221    12


Q ss_pred             Ccce----EEEccCCCEEEEEe
Q 030700          153 FANG----VALSEDERFLVVCE  170 (173)
Q Consensus       153 ~p~g----i~~~~dg~~lyv~~  170 (173)
                      .|.|    +++++||+.+||+.
T Consensus       225 ~p~g~~~~v~~~~dG~~~~V~~  246 (426)
T 3c75_H          225 FPASPTVFYMNCRDGSLARVDF  246 (426)
T ss_dssp             EEEETTEEEEEETTSSEEEEEC
T ss_pred             ccCCCcEEEEEcCCCCEEEEEC
Confidence            3445    78888998888764

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.01  E-value=3.9e-08  Score=78.60  Aligned_cols=137  Identities=14%  Similarity=0.128  Sum_probs=91.8

Q ss_pred             CCcceEEEcCCCCEEEE-cCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEE
Q 030700           10 NHPEDVSVDGNGVLYTA-TGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~-~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~   85 (173)
                      ....++++.|++.++++ ..++.|..|+.+++... +........ .++|++++++|..+.....+...+.++  ...+.
T Consensus       427 ~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~~v~-~~~~spd~~~las~~~d~~i~iw~~~~~~~~~~~  505 (577)
T 2ymu_A          427 SSVWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVR-GVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLT  505 (577)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCEEEEEECCSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCEEEEEcCCCCEEEEEe
Confidence            34567999998876654 47888999998876544 333445567 999999999955544444454455666  33332


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~  165 (173)
                      . ..    ...+.++++|||+++++-.                 .++.|..+|..+..+..+........+++|+||+++
T Consensus       506 ~-h~----~~v~~l~~s~dg~~l~s~~-----------------~dg~v~lwd~~~~~~~~~~~h~~~v~~~~fs~dg~~  563 (577)
T 2ymu_A          506 G-HS----SSVRGVAFSPDGQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQT  563 (577)
T ss_dssp             C-CS----SCEEEEEECTTSSCEEEEE-----------------TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             C-CC----CCEEEEEEcCCCCEEEEEE-----------------CcCEEEEEeCCCCEEEEEcCCCCCEEEEEEcCCCCE
Confidence            1 11    3567899999998766532                 347888888754334444444556689999999997


Q ss_pred             EEEE
Q 030700          166 LVVC  169 (173)
Q Consensus       166 lyv~  169 (173)
                      |+.+
T Consensus       564 l~s~  567 (577)
T 2ymu_A          564 IASA  567 (577)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.00  E-value=1.2e-08  Score=82.18  Aligned_cols=134  Identities=10%  Similarity=-0.014  Sum_probs=94.1

Q ss_pred             EEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc--CCcEEEEeccCCc
Q 030700           16 SVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE--EGVTVLVSQFNGS   91 (173)
Q Consensus        16 ~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~--~g~~~~~~~~~~~   91 (173)
                      +++|++.+|++. .++.|..+|. ++++......+..++ +++++++|++||+++..+.|..++.  ...+.+.....+ 
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~~~-~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g-  221 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG-  221 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTTEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC-
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcccc-eEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecC-
Confidence            478888999888 6788999995 566554434344488 9999999999899988776777776  222222222222 


Q ss_pred             cccCCccEEEcC----CCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc------------ccCc
Q 030700           92 QLRFANDVIEAS----DGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------------LYFA  154 (173)
Q Consensus        92 ~~~~~~~l~~~~----dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------~~~p  154 (173)
                        ..|.+++++|    ||+ +|+++..                 ++.|..+|..++++......            ...+
T Consensus       222 --~~p~~va~sp~~~~dg~~l~v~~~~-----------------~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v  282 (543)
T 1nir_A          222 --IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRV  282 (543)
T ss_dssp             --SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCE
T ss_pred             --CCcceEEeCCCcCCCCCEEEEEEcc-----------------CCeEEEEeccccccceeecccCcccCccccccCCce
Confidence              4689999999    996 6777531                 35788889888765444332            1245


Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      .+|+++|+++.+|++.
T Consensus       283 ~~i~~s~~~~~~~vs~  298 (543)
T 1nir_A          283 AAIIASHEHPEFIVNV  298 (543)
T ss_dssp             EEEEECSSSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEE
Confidence            6899999999888875

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=99.00  E-value=1.4e-07  Score=68.91  Aligned_cols=148  Identities=15%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             ecCCccCCcceEEEcCC-CCEEE-EcCCCeEEEEcCCCcEEEecc--ccCccccceEEccCCcEEEEEeCC-CeEEEEc-
Q 030700            4 LGEGIVNHPEDVSVDGN-GVLYT-ATGDGWIKRMHPNGTWEDWHQ--VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS-   77 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~-g~l~~-~~~~~~i~~~~~~g~~~~~~~--~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~-   77 (173)
                      -.+|....+.|++++|+ +.||+ .+..+.|+++|++|++....+  ....+. ||++..++++ |+++.. ++++.+. 
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~g~v~~~i~l~g~~D~E-GIa~~~~g~~-~vs~E~~~~l~~~~v   98 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTNGDLIRTIPLDFVKDLE-TIEYIGDNQF-VISDERDYAIYVISL   98 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETTCCEEEEEECSSCSSEE-EEEECSTTEE-EEEETTTTEEEEEEE
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCCCCEEEEEecCCCCChH-HeEEeCCCEE-EEEECCCCcEEEEEc
Confidence            34565678999999995 57995 558889999999888665433  235789 9999999887 777655 4666555 


Q ss_pred             -cCC-cEEEEec---c-CCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEc--CCCCeeEEee
Q 030700           78 -EEG-VTVLVSQ---F-NGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYD--PSTNQTSLVL  148 (173)
Q Consensus        78 -~~g-~~~~~~~---~-~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d--~~~~~~~~~~  148 (173)
                       .++ ...+...   . ....-....+|+++|++ ++|++...                ....||.++  +.+.......
T Consensus        99 ~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~----------------~p~~i~~~~g~~~~~~l~i~~  162 (255)
T 3qqz_A           99 TPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEK----------------NPIEVYKVNGLLSSNELHISK  162 (255)
T ss_dssp             CTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEES----------------SSEEEEEEESTTCSSCCEEEE
T ss_pred             CCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECc----------------CCceEEEEcccccCCceeeec
Confidence             344 2222211   1 11122346899999987 68988533                123788887  2222233321


Q ss_pred             c-------cccCcceEEEccCCCEEEEE
Q 030700          149 D-------GLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       149 ~-------~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .       ...-+.+++++|....||+.
T Consensus       163 ~~~~~~~~~~~d~S~l~~dp~tg~lliL  190 (255)
T 3qqz_A          163 DKALQRQFTLDDVSGAEFNQQKNTLLVL  190 (255)
T ss_dssp             CHHHHHTCCSSCCCEEEEETTTTEEEEE
T ss_pred             chhhccccccCCceeEEEcCCCCeEEEE
Confidence            1       13457899999987777774

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=98.99  E-value=9.5e-08  Score=70.46  Aligned_cols=135  Identities=13%  Similarity=0.124  Sum_probs=93.6

Q ss_pred             cceEEEcCCCCEEEEc-C-CCeEEEEcCCCcEEEecc-------ccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-
Q 030700           12 PEDVSVDGNGVLYTAT-G-DGWIKRMHPNGTWEDWHQ-------VGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-   80 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~-~~~i~~~~~~g~~~~~~~-------~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-   80 (173)
                      ..++.+.++|++++++ . +++++.++++|+......       ....+. +++++++|++ +++... +.++.++++| 
T Consensus        79 ~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~-~v~~~~~G~~-lv~~~~~~~v~~~d~~G~  156 (276)
T 3no2_A           79 MQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFR-QINKNKKGNY-LVPLFATSEVREIAPNGQ  156 (276)
T ss_dssp             EEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCS-CCEECTTSCE-EEEETTTTEEEEECTTSC
T ss_pred             ccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEEeccCCCCccccccc-CceECCCCCE-EEEecCCCEEEEECCCCC
Confidence            4567888899988877 4 788999999997543211       112467 8889999999 666654 5688888778 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE-Eeec------cccC
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLD------GLYF  153 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~------~~~~  153 (173)
                      ...-... .    ..|.++...++|++++++..                 .++|+.+|+++|++. .+..      .+..
T Consensus       157 ~~w~~~~-~----~~~~~~~~~~~g~~~v~~~~-----------------~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~  214 (276)
T 3no2_A          157 LLNSVKL-S----GTPFSSAFLDNGDCLVACGD-----------------AHCFVQLNLESNRIVRRVNANDIEGVQLFF  214 (276)
T ss_dssp             EEEEEEC-S----SCCCEEEECTTSCEEEECBT-----------------TSEEEEECTTTCCEEEEEEGGGSBSCCCSE
T ss_pred             EEEEEEC-C----CCccceeEcCCCCEEEEeCC-----------------CCeEEEEeCcCCcEEEEecCCCCCCccccc
Confidence            3222221 1    35778899999999998532                 358999999977642 2221      1345


Q ss_pred             cceEEEccCCCEEEEEec
Q 030700          154 ANGVALSEDERFLVVCES  171 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~~~  171 (173)
                      |.+++..++|+ +||++.
T Consensus       215 ~~~~~~~~~G~-i~v~~~  231 (276)
T 3no2_A          215 VAQLFPLQNGG-LYICNW  231 (276)
T ss_dssp             EEEEEECTTSC-EEEEEE
T ss_pred             cccceEcCCCC-EEEEec
Confidence            78999999987 777763

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.99  E-value=4.4e-09  Score=84.80  Aligned_cols=141  Identities=11%  Similarity=0.132  Sum_probs=90.1

Q ss_pred             CcceEEEcCCC-CEEEEcCCC--------------------------------------eEEEEcCC---CcE-EEeccc
Q 030700           11 HPEDVSVDGNG-VLYTATGDG--------------------------------------WIKRMHPN---GTW-EDWHQV   47 (173)
Q Consensus        11 ~p~~l~~~~~g-~l~~~~~~~--------------------------------------~i~~~~~~---g~~-~~~~~~   47 (173)
                      .|++++++++| .+|++..+.                                      .|..+|..   ++. ....+.
T Consensus       196 ~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipv  275 (595)
T 1fwx_A          196 NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPI  275 (595)
T ss_dssp             CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEE
T ss_pred             CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEec
Confidence            69999999987 677777221                                      23344422   222 233455


Q ss_pred             cCccccceEEccCCcEEEEEeCCC-eEEEEccCC-c-----------EEEEeccCCccccCCccEEEcCCCcEEEEeCcC
Q 030700           48 GSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEEG-V-----------TVLVSQFNGSQLRFANDVIEASDGSLYFTVSST  114 (173)
Q Consensus        48 ~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~g-~-----------~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~  114 (173)
                      +..|+ |+.++|||+++|+++... .+..++.+. .           ........|   ..|.++++++||++|++..- 
T Consensus       276 g~~Ph-Gv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG---~gP~h~aF~~dG~aY~t~~l-  350 (595)
T 1fwx_A          276 ANNPH-GCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELG---LGPLHTAFDGRGNAYTSLFL-  350 (595)
T ss_dssp             ESSCC-CEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCC---SCEEEEEECTTSEEEEEETT-
T ss_pred             CCCce-EEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCC---CCcceEEECCCCeEEEEEec-
Confidence            66899 999999999989988764 566666332 1           133333333   58999999999999998542 


Q ss_pred             CcCcccceeeecccCCCceEEEEcCCC----------Cee-EEeecc-----ccCcceEEEccCCCEEEEEecC
Q 030700          115 KFTPAEYYLDLVSGEPHGVLLKYDPST----------NQT-SLVLDG-----LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       115 ~~~~~~~~~~~~~~~~~~~v~~~d~~~----------~~~-~~~~~~-----~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                                      ++.|..||.++          .++ ..+.-+     ...+.|++++|||++||+++-+
T Consensus       351 ----------------dsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~  408 (595)
T 1fwx_A          351 ----------------DSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKF  408 (595)
T ss_dssp             ----------------TTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESC
T ss_pred             ----------------CCcEEEEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCC
Confidence                            24566666543          111 111111     2233678889999999998754

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.99  E-value=9.4e-08  Score=71.08  Aligned_cols=132  Identities=13%  Similarity=0.214  Sum_probs=82.7

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEeccC
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQFN   89 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~~   89 (173)
                      ...++++++|.||++.  +.|++++.+|+... ......... +++++++|++ |++....+++.++.+| ....... .
T Consensus       179 ~~~~~~d~~g~l~v~t--~~l~~~d~~g~~~~~~~~~~~~~~-~~~~~~~g~l-~v~t~~~gl~~~~~~g~~~~~~~~-~  253 (330)
T 3hxj_A          179 TSAASIGKDGTIYFGS--DKVYAINPDGTEKWNFYAGYWTVT-RPAISEDGTI-YVTSLDGHLYAINPDGTEKWRFKT-G  253 (330)
T ss_dssp             CSCCEECTTCCEEEES--SSEEEECTTSCEEEEECCSSCCCS-CCEECTTSCE-EEEETTTEEEEECTTSCEEEEEEC-S
T ss_pred             eeeeEEcCCCEEEEEe--CEEEEECCCCcEEEEEccCCccee-ceEECCCCeE-EEEcCCCeEEEECCCCCEeEEeeC-C
Confidence            4556777788888877  77888886665432 222223456 7888888888 8877666788887766 2221111 1


Q ss_pred             CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus        90 ~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .   ..+..+.++++|++|++..                  ++.|+++|+++...............++.+++|+ ||++
T Consensus       254 ~---~~~~~~~~~~~g~l~v~t~------------------~ggl~~~d~~g~~~~~~~~~~~~~~~~~~d~~g~-l~~g  311 (330)
T 3hxj_A          254 K---RIESSPVIGNTDTIYFGSY------------------DGHLYAINPDGTEKWNFETGSWIIATPVIDENGT-IYFG  311 (330)
T ss_dssp             S---CCCSCCEECTTSCEEEECT------------------TCEEEEECTTSCEEEEEECSSCCCSCCEECTTCC-EEEE
T ss_pred             C---CccccceEcCCCeEEEecC------------------CCCEEEECCCCcEEEEEEcCCccccceEEcCCCE-EEEE
Confidence            1   2345577788888998843                  3689999985332322222234455677778876 6765


Q ss_pred             e
Q 030700          170 E  170 (173)
Q Consensus       170 ~  170 (173)
                      .
T Consensus       312 t  312 (330)
T 3hxj_A          312 T  312 (330)
T ss_dssp             C
T ss_pred             c
Confidence            3

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.99  E-value=4.7e-08  Score=75.98  Aligned_cols=140  Identities=12%  Similarity=0.059  Sum_probs=92.1

Q ss_pred             CCcceEEEcCCCC-EEEEcCC---CeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEcc-CC
Q 030700           10 NHPEDVSVDGNGV-LYTATGD---GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~---~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~-~g   80 (173)
                      ....+++|+|+|. |+++..+   ..|+.++. +|+...+........ .++|+|||+.|+++...   ..|+.++. .+
T Consensus       179 ~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~~~~~~~~-~~~~spdg~~la~~~~~~g~~~i~~~d~~~~  257 (415)
T 2hqs_A          179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNG-APAFSPDGSKLAFALSKTGSLNLYVMDLASG  257 (415)
T ss_dssp             SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTC
T ss_pred             CcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEeecCCCccc-CEEEcCCCCEEEEEEecCCCceEEEEECCCC
Confidence            3467799999985 4444433   48999996 566655544455667 99999999865644332   24777775 44


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~  158 (173)
                       ...+... .    .....++++|||+ ++++...               .....|+.+|..+++...+.........++
T Consensus       258 ~~~~l~~~-~----~~~~~~~~spdg~~l~~~s~~---------------~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~  317 (415)
T 2hqs_A          258 QIRQVTDG-R----SNNTEPTWFPDSQNLAFTSDQ---------------AGRPQVYKVNINGGAPQRITWEGSQNQDAD  317 (415)
T ss_dssp             CEEECCCC-S----SCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCCEECCCSSSEEEEEE
T ss_pred             CEEeCcCC-C----CcccceEECCCCCEEEEEECC---------------CCCcEEEEEECCCCCEEEEecCCCcccCeE
Confidence             4333211 1    2456789999997 5555321               112389999998887665544444556899


Q ss_pred             EccCCCEEEEEe
Q 030700          159 LSEDERFLVVCE  170 (173)
Q Consensus       159 ~~~dg~~lyv~~  170 (173)
                      |+|||++|+++.
T Consensus       318 ~spdG~~l~~~~  329 (415)
T 2hqs_A          318 VSSDGKFMVMVS  329 (415)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999888764

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.98  E-value=1.3e-08  Score=78.29  Aligned_cols=64  Identities=5%  Similarity=-0.105  Sum_probs=46.5

Q ss_pred             eecCCccCCcceEEEcCCC-CEEEEcC----------CCeEEEEcC-CCcEEEecccc--------CccccceEEccCCc
Q 030700            3 KLGEGIVNHPEDVSVDGNG-VLYTATG----------DGWIKRMHP-NGTWEDWHQVG--------SQSLLGLTTTKENN   62 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g-~l~~~~~----------~~~i~~~~~-~g~~~~~~~~~--------~~p~~gl~~~~~g~   62 (173)
                      ++..|  ..| +++++|+| .+|+++.          ++.|..+|+ +++.......+        ..|. ++++++||+
T Consensus        61 ~i~vG--~~P-~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~-~ia~SpDGk  136 (368)
T 1mda_H           61 HSLGA--FLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH-IIGNCASSA  136 (368)
T ss_dssp             EEEEC--TTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTT-SEEECTTSS
T ss_pred             EEeCC--CCC-ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcc-eEEEcCCCC
Confidence            34445  347 99999987 7999872          467999995 45554433222        4699 999999998


Q ss_pred             EEEEEeCC
Q 030700           63 VIIVCDSQ   70 (173)
Q Consensus        63 l~~v~~~~   70 (173)
                      .+||++..
T Consensus       137 ~lyVan~~  144 (368)
T 1mda_H          137 CLLFFLFG  144 (368)
T ss_dssp             CEEEEECS
T ss_pred             EEEEEccC
Confidence            88999864

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.98  E-value=1.4e-07  Score=69.86  Aligned_cols=138  Identities=12%  Similarity=0.081  Sum_probs=95.3

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEEE
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~~   85 (173)
                      ....+++++|++..+ ++..++.|..|+.. ++............ .+++++++++++++.....+..++.. + ...+.
T Consensus       184 ~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~  262 (337)
T 1gxr_A          184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceE-EEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEc
Confidence            457789999988655 55588999999954 44443334455667 99999999996666555556666643 3 32221


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~  165 (173)
                       ..    ...+..++++|+|+++++..                 .++.|..++..+++..........+..++|+|+++.
T Consensus       263 -~~----~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~  320 (337)
T 1gxr_A          263 -LH----ESCVLSLKFAYCGKWFVSTG-----------------KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKY  320 (337)
T ss_dssp             -CC----SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCE
T ss_pred             -CC----ccceeEEEECCCCCEEEEec-----------------CCCcEEEEECCCCeEEEEecCCCcEEEEEECCCCCE
Confidence             11    13568899999998766532                 347899999887766544444566788999999998


Q ss_pred             EEEEe
Q 030700          166 LVVCE  170 (173)
Q Consensus       166 lyv~~  170 (173)
                      |+++.
T Consensus       321 l~~~~  325 (337)
T 1gxr_A          321 IVTGS  325 (337)
T ss_dssp             EEEEE
T ss_pred             EEEec
Confidence            87764

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.97  E-value=1e-07  Score=70.94  Aligned_cols=133  Identities=13%  Similarity=0.216  Sum_probs=82.4

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEeccCC
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFNG   90 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~~   90 (173)
                      ...++.+++|.+|++..++.|++++++|+... ......... .+.++++|++ |++.  .+++.++.+|..........
T Consensus       139 ~~~~~~~~~g~l~vgt~~~~l~~~d~~g~~~~~~~~~~~~~~-~~~~d~~g~l-~v~t--~~l~~~d~~g~~~~~~~~~~  214 (330)
T 3hxj_A          139 YATPIVSEDGTIYVGSNDNYLYAINPDGTEKWRFKTNDAITS-AASIGKDGTI-YFGS--DKVYAINPDGTEKWNFYAGY  214 (330)
T ss_dssp             CSCCEECTTSCEEEECTTSEEEEECTTSCEEEEEECSSCCCS-CCEECTTCCE-EEES--SSEEEECTTSCEEEEECCSS
T ss_pred             eeeeEEcCCCEEEEEcCCCEEEEECCCCCEeEEEecCCCcee-eeEEcCCCEE-EEEe--CEEEEECCCCcEEEEEccCC
Confidence            34567777888888887788888887765432 222233445 6778888887 7776  67888886662222211111


Q ss_pred             ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        91 ~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                         .....++++++|++|++..                  ++.|+++++++............+..++++++++ ||++.
T Consensus       215 ---~~~~~~~~~~~g~l~v~t~------------------~~gl~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~-l~v~t  272 (330)
T 3hxj_A          215 ---WTVTRPAISEDGTIYVTSL------------------DGHLYAINPDGTEKWRFKTGKRIESSPVIGNTDT-IYFGS  272 (330)
T ss_dssp             ---CCCSCCEECTTSCEEEEET------------------TTEEEEECTTSCEEEEEECSSCCCSCCEECTTSC-EEEEC
T ss_pred             ---cceeceEECCCCeEEEEcC------------------CCeEEEECCCCCEeEEeeCCCCccccceEcCCCe-EEEec
Confidence               3567788888888988753                  2578888876444433333333344566665664 66653

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=98.96  E-value=9.7e-08  Score=76.27  Aligned_cols=138  Identities=15%  Similarity=0.175  Sum_probs=92.7

Q ss_pred             CCcceEEEcCCCCEEE-EcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEEE
Q 030700           10 NHPEDVSVDGNGVLYT-ATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~~   85 (173)
                      ....+++++|+|..++ +..++.|..|+.+++... +........ +++|+++++++..+.....+...+.++  ...+.
T Consensus       386 ~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~d~~v~~w~~~~~~~~~~~  464 (577)
T 2ymu_A          386 SSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVW-GVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLT  464 (577)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSEEEEECTTCCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTSCEEEEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCEEEEecCCCCCeE-EEEECCCCCEEEEEcCCCEEEEEECCCCEEEEEc
Confidence            4467899999986554 457888999998777543 333344566 899999999855554444455555666  33332


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~  165 (173)
                      . ..    .....++++|||+++++-.                 .++.|..+|..+..+..+.......+.|+|+||+++
T Consensus       465 ~-~~----~~v~~~~~spd~~~las~~-----------------~d~~i~iw~~~~~~~~~~~~h~~~v~~l~~s~dg~~  522 (577)
T 2ymu_A          465 G-HS----SSVRGVAFSPDGQTIASAS-----------------DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQT  522 (577)
T ss_dssp             C-CS----SCEEEEEECTTSCEEEEEE-----------------TTSEEEEEETTSCEEEEEECCSSCEEEEEECTTSSC
T ss_pred             C-CC----CCEEEEEEcCCCCEEEEEe-----------------CCCEEEEEcCCCCEEEEEeCCCCCEEEEEEcCCCCE
Confidence            1 11    3467899999998777632                 346888888764444444444556689999999998


Q ss_pred             EEEEe
Q 030700          166 LVVCE  170 (173)
Q Consensus       166 lyv~~  170 (173)
                      |+.+.
T Consensus       523 l~s~~  527 (577)
T 2ymu_A          523 IASAS  527 (577)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            87654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.94  E-value=9.2e-08  Score=69.29  Aligned_cols=139  Identities=11%  Similarity=0.060  Sum_probs=92.4

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCC--CcEEEecccc--CccccceEEccCCcEEEEEeC----CCeEEEEccCC-
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN--GTWEDWHQVG--SQSLLGLTTTKENNVIIVCDS----QQGLLKVSEEG-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~--g~~~~~~~~~--~~p~~gl~~~~~g~l~~v~~~----~~~i~~~~~~g-   80 (173)
                      ....+++++|+|..++...++.|+.++.+  ++...+....  .... .++++++|+.++++..    ...++.++.++ 
T Consensus        42 ~~v~~~~~spdg~~l~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~  120 (297)
T 2ojh_A           42 ELFEAPNWSPDGKYLLLNSEGLLYRLSLAGDPSPEKVDTGFATICNN-DHGISPDGALYAISDKVEFGKSAIYLLPSTGG  120 (297)
T ss_dssp             SCCEEEEECTTSSEEEEEETTEEEEEESSSCCSCEECCCTTCCCBCS-CCEECTTSSEEEEEECTTTSSCEEEEEETTCC
T ss_pred             cceEeeEECCCCCEEEEEcCCeEEEEeCCCCCCceEecccccccccc-ceEECCCCCEEEEEEeCCCCcceEEEEECCCC
Confidence            35778999999976655557899999964  4444443222  4566 8999999998666652    23577777543 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVA  158 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~  158 (173)
                       ...+..   .   .....++++|||+ ++++...               ...-.|+.++..+++...+......+..++
T Consensus       121 ~~~~~~~---~---~~~~~~~~spdg~~l~~~~~~---------------~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  179 (297)
T 2ojh_A          121 TPRLMTK---N---LPSYWHGWSPDGKSFTYCGIR---------------DQVFDIYSMDIDSGVETRLTHGEGRNDGPD  179 (297)
T ss_dssp             CCEECCS---S---SSEEEEEECTTSSEEEEEEEE---------------TTEEEEEEEETTTCCEEECCCSSSCEEEEE
T ss_pred             ceEEeec---C---CCccceEECCCCCEEEEEECC---------------CCceEEEEEECCCCcceEcccCCCccccce
Confidence             333321   1   1356789999997 4544321               011378888888777766665556678899


Q ss_pred             EccCCCEEEEEe
Q 030700          159 LSEDERFLVVCE  170 (173)
Q Consensus       159 ~~~dg~~lyv~~  170 (173)
                      |+|+++.|+++.
T Consensus       180 ~s~dg~~l~~~~  191 (297)
T 2ojh_A          180 YSPDGRWIYFNS  191 (297)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEe
Confidence            999999887753

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=98.93  E-value=1e-07  Score=74.01  Aligned_cols=138  Identities=16%  Similarity=0.144  Sum_probs=91.4

Q ss_pred             CcceEEEcCCCC-EEEEc-C--CCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCC---eEEEEccC-C-
Q 030700           11 HPEDVSVDGNGV-LYTAT-G--DGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLKVSEE-G-   80 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~-~--~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~~~~~-g-   80 (173)
                      ...+++|+|+|. |+++. .  ...|+.++. +++...+........ .++|++||+.++++....   .++.++.+ + 
T Consensus       224 ~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~  302 (415)
T 2hqs_A          224 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNT-EPTWFPDSQNLAFTSDQAGRPQVYKVNINGGA  302 (415)
T ss_dssp             CEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCCSSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTSSC
T ss_pred             cccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeCcCCCCccc-ceEECCCCCEEEEEECCCCCcEEEEEECCCCC
Confidence            457899999996 55443 3  345999996 455655544455567 899999998656554322   57777754 4 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                      ...+..  .+   .....++++|||+. +++...               .....|+.+|.++++...+.... ....++|
T Consensus       303 ~~~l~~--~~---~~~~~~~~spdG~~l~~~~~~---------------~g~~~i~~~d~~~~~~~~l~~~~-~~~~~~~  361 (415)
T 2hqs_A          303 PQRITW--EG---SQNQDADVSSDGKFMVMVSSN---------------GGQQHIAKQDLATGGVQVLSSTF-LDETPSL  361 (415)
T ss_dssp             CEECCC--SS---SEEEEEEECTTSSEEEEEEEC---------------SSCEEEEEEETTTCCEEECCCSS-SCEEEEE
T ss_pred             EEEEec--CC---CcccCeEECCCCCEEEEEECc---------------CCceEEEEEECCCCCEEEecCCC-CcCCeEE
Confidence            433321  11   24567899999974 444211               12358999999988776555443 6788999


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +|||+.|+++.
T Consensus       362 spdg~~l~~~s  372 (415)
T 2hqs_A          362 APNGTMVIYSS  372 (415)
T ss_dssp             CTTSSEEEEEE
T ss_pred             cCCCCEEEEEE
Confidence            99999887754

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.89  E-value=3.7e-07  Score=68.40  Aligned_cols=135  Identities=14%  Similarity=0.127  Sum_probs=89.3

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CC--cEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EG--VTV   83 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g--~~~   83 (173)
                      ...+++++|+|.++++. .++.|..||. +++... +........ .++|++++++ +++...++ +...+. .+  ...
T Consensus       166 ~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~spd~~~-l~s~s~dg~i~iwd~~~~~~~~~  243 (321)
T 3ow8_A          166 FILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIR-SLTFSPDSQL-LVTASDDGYIKIYDVQHANLAGT  243 (321)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCC-EEEECTTSCE-EEEECTTSCEEEEETTTCCEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCcee-EEEEcCCCCE-EEEEcCCCeEEEEECCCcceeEE
Confidence            45689999999766544 8889999995 455433 323334456 9999999998 44444444 444453 34  222


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d  162 (173)
                      +. ...    .....++++|+|.++++..                 .++.|..+|..+++......+ .....+++|+|+
T Consensus       244 ~~-~h~----~~v~~~~~sp~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~  301 (321)
T 3ow8_A          244 LS-GHA----SWVLNVAFCPDDTHFVSSS-----------------SDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGN  301 (321)
T ss_dssp             EC-CCS----SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTT
T ss_pred             Ec-CCC----CceEEEEECCCCCEEEEEe-----------------CCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCC
Confidence            21 111    3467899999998777632                 347889999887765444433 455678999999


Q ss_pred             CCEEEEE
Q 030700          163 ERFLVVC  169 (173)
Q Consensus       163 g~~lyv~  169 (173)
                      ++.|+.+
T Consensus       302 g~~l~s~  308 (321)
T 3ow8_A          302 GSKIVSV  308 (321)
T ss_dssp             SSEEEEE
T ss_pred             CCEEEEE
Confidence            9977654

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=98.89  E-value=7.5e-07  Score=66.68  Aligned_cols=138  Identities=14%  Similarity=0.138  Sum_probs=90.6

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      .....+++.|+|..+++. .++.|..|+. +++.. .+........ .++++++|++|+.+.....+..++. ++  ...
T Consensus       123 ~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~-~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~  201 (321)
T 3ow8_A          123 VDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFIL-SIAYSPDGKYLASGAIDGIINIFDIATGKLLHT  201 (321)
T ss_dssp             TCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEE-EEEECCCCCEEEEEcCCCeEEEEECCCCcEEEE
Confidence            345679999998766544 7888988885 34433 3333344566 8999999999555544444555553 45  222


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d  162 (173)
                      +. ...    .....++++|+|.++++-.                 .++.|..+|..+++......+ ......++|+|+
T Consensus       202 ~~-~h~----~~v~~l~~spd~~~l~s~s-----------------~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~  259 (321)
T 3ow8_A          202 LE-GHA----MPIRSLTFSPDSQLLVTAS-----------------DDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPD  259 (321)
T ss_dssp             EC-CCS----SCCCEEEECTTSCEEEEEC-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECTT
T ss_pred             Ec-ccC----CceeEEEEcCCCCEEEEEc-----------------CCCeEEEEECCCcceeEEEcCCCCceEEEEECCC
Confidence            21 111    2468899999998777632                 347888899877665444443 445678999999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      +++|+.+.
T Consensus       260 ~~~l~s~s  267 (321)
T 3ow8_A          260 DTHFVSSS  267 (321)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEe
Confidence            99877653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=98.86  E-value=6.6e-07  Score=66.18  Aligned_cols=138  Identities=12%  Similarity=0.062  Sum_probs=92.6

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcCCC-c--EE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--c
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPNG-T--WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~g-~--~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~   81 (173)
                      ....+++++|++.++ ++..++.|..|+... +  .. .+........ .+++++++++++++.....+..++. .+  .
T Consensus        98 ~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~  176 (337)
T 1gxr_A           98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACY-ALAISPDSKVCFSCCSDGNIAVWDLHNQTLV  176 (337)
T ss_dssp             SBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             CcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceE-EEEECCCCCEEEEEeCCCcEEEEeCCCCcee
Confidence            446789999988655 555788999998643 3  12 2223344566 8999999998566655555666664 44  2


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      ..+ ...    ......++++|+|..+++..                 .++.|..+|..+++.............++|+|
T Consensus       177 ~~~-~~~----~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~  234 (337)
T 1gxr_A          177 RQF-QGH----TDGASCIDISNDGTKLWTGG-----------------LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP  234 (337)
T ss_dssp             EEE-CCC----SSCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCEEEEEECT
T ss_pred             eee-ecc----cCceEEEEECCCCCEEEEEe-----------------cCCcEEEEECCCCceEeeecCCCceEEEEECC
Confidence            222 111    13567899999997666521                 34789999998777655554455668899999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      +++.++++.
T Consensus       235 ~~~~l~~~~  243 (337)
T 1gxr_A          235 TGEWLAVGM  243 (337)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEc
Confidence            999888764

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=98.85  E-value=3.2e-08  Score=80.14  Aligned_cols=74  Identities=18%  Similarity=0.271  Sum_probs=54.1

Q ss_pred             ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc--cCcceEEEccCCCEEEE
Q 030700           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL--YFANGVALSEDERFLVV  168 (173)
Q Consensus        91 ~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~--~~p~gi~~~~dg~~lyv  168 (173)
                      ..+..|+.|+++++|+|||++.........     ......+.++.+++.++++..++.+.  ....|++|+||+++|||
T Consensus       473 ~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~-----~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfv  547 (592)
T 3zwu_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGD-----FAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFV  547 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCCSGG-----GTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEE
T ss_pred             CCccCCcceEECCCCCEEEEecCCCccccc-----ccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEE
Confidence            347899999999999999976432111110     11223468899999999988887653  45579999999999999


Q ss_pred             E
Q 030700          169 C  169 (173)
Q Consensus       169 ~  169 (173)
                      +
T Consensus       548 n  548 (592)
T 3zwu_A          548 G  548 (592)
T ss_dssp             E
T ss_pred             E
Confidence            6

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.84  E-value=1.5e-07  Score=68.74  Aligned_cols=129  Identities=15%  Similarity=0.099  Sum_probs=80.8

Q ss_pred             CCcceEEEcCCCCEEEEc-CC--CeEEEEcC-CCcEEEeccccCc--cccceEEccCCcEEEEEeCCC-eEEEEcc-CC-
Q 030700           10 NHPEDVSVDGNGVLYTAT-GD--GWIKRMHP-NGTWEDWHQVGSQ--SLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~--~~i~~~~~-~g~~~~~~~~~~~--p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g-   80 (173)
                      ..-.||.++ ++.||++. ..  ..|.++|+ +|++.........  .. |++++.+ ++ |++.+.. .++.+|. +. 
T Consensus        43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~Fge-Git~~g~-~l-y~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGE-GISDWKD-KI-VGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEE-EEEEETT-EE-EEEESSSSEEEEEETTTCC
T ss_pred             cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCcccee-EEEEeCC-EE-EEEEeeCCEEEEEECccCc
Confidence            444899998 78999887 33  37999995 6776544333333  35 6666433 55 9988764 5676775 44 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec------ccc
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD------GLY  152 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~------~~~  152 (173)
                       ...+.-.        +.+..+.+|| .+|+++.+                  ++|+.+||++.++..-..      .+.
T Consensus       119 ~~~ti~~~--------~eG~glt~dg~~L~~SdGs------------------~~i~~iDp~T~~v~~~I~V~~~g~~~~  172 (262)
T 3nol_A          119 QVRSFNYD--------GEGWGLTHNDQYLIMSDGT------------------PVLRFLDPESLTPVRTITVTAHGEELP  172 (262)
T ss_dssp             EEEEEECS--------SCCCCEEECSSCEEECCSS------------------SEEEEECTTTCSEEEEEECEETTEECC
T ss_pred             EEEEEECC--------CCceEEecCCCEEEEECCC------------------CeEEEEcCCCCeEEEEEEeccCCcccc
Confidence             3343321        1333444555 68888632                  689999999865433321      235


Q ss_pred             CcceEEEccCCCEEEEEe
Q 030700          153 FANGVALSEDERFLVVCE  170 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~~  170 (173)
                      .+|.+.+. +| .||++.
T Consensus       173 ~lNELe~~-~G-~lyan~  188 (262)
T 3nol_A          173 ELNELEWV-DG-EIFANV  188 (262)
T ss_dssp             CEEEEEEE-TT-EEEEEE
T ss_pred             ccceeEEE-CC-EEEEEE
Confidence            67788886 66 588764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=98.84  E-value=1.6e-07  Score=76.10  Aligned_cols=131  Identities=9%  Similarity=-0.054  Sum_probs=89.6

Q ss_pred             cCCCCEEEEc-CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEEEeccCCccc
Q 030700           18 DGNGVLYTAT-GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVLVSQFNGSQL   93 (173)
Q Consensus        18 ~~~g~l~~~~-~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~~~~~~~~~~   93 (173)
                      |+++.+|++. .++.|..+|.+ +++......+..|+ ++++++||+++|+++....+..+|.. . .+.+.....+   
T Consensus       164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~~p~-~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G---  239 (567)
T 1qks_A          164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIG---  239 (567)
T ss_dssp             CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECC---
T ss_pred             CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCCCCcc-ceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecC---
Confidence            3455788887 67899999964 56655456667899 99999999998999876678888863 2 2222332223   


Q ss_pred             cCCccEEEc----CCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc------------ccCcce
Q 030700           94 RFANDVIEA----SDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------------LYFANG  156 (173)
Q Consensus        94 ~~~~~l~~~----~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------~~~p~g  156 (173)
                      ..|.+++++    |||+ +|+++..                 .+.+..+|..+.++......            ...+.+
T Consensus       240 ~~P~~ia~s~~~~pDGk~l~v~n~~-----------------~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~  302 (567)
T 1qks_A          240 SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAA  302 (567)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEE
T ss_pred             CCCceeEEccccCCCCCEEEEEEcc-----------------CCeEEEEECCCCcEEEEEeccccccccccccCCCceEE
Confidence            368999999    6996 7887532                 26788889887765433221            113357


Q ss_pred             EEEccCCCEEEEE
Q 030700          157 VALSEDERFLVVC  169 (173)
Q Consensus       157 i~~~~dg~~lyv~  169 (173)
                      |..++++..++++
T Consensus       303 i~~s~~~~~~vv~  315 (567)
T 1qks_A          303 ILASHYRPEFIVN  315 (567)
T ss_dssp             EEECSSSSEEEEE
T ss_pred             EEEcCCCCEEEEE
Confidence            7888877666655

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.84  E-value=3.7e-07  Score=69.59  Aligned_cols=140  Identities=13%  Similarity=0.138  Sum_probs=87.2

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEc-CCCcEEEe--c-cccCccccceEEccCCcEEEEEeCCC----eEEEEcc-CC-
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMH-PNGTWEDW--H-QVGSQSLLGLTTTKENNVIIVCDSQQ----GLLKVSE-EG-   80 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~-~~g~~~~~--~-~~~~~p~~gl~~~~~g~l~~v~~~~~----~i~~~~~-~g-   80 (173)
                      ...+|+|.|+|.++++..++.+.+++ .+++....  . ....... .++|++++++++.+....    .+..++. .+ 
T Consensus       178 ~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~  256 (365)
T 4h5i_A          178 EVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIARKTDFDKNWSLS-KINFIADDTVLIAASLKKGKGIVLTKISIKSGN  256 (365)
T ss_dssp             CCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEEECCCCTTEEEE-EEEEEETTEEEEEEEESSSCCEEEEEEEEETTE
T ss_pred             ceEEEEEccCCceEEeccceeEEEEEeccCcceeeeecCCCCCCEE-EEEEcCCCCEEEEEecCCcceeEEeecccccce
Confidence            36789999999888776666777776 45654321  1 1233456 899999998855543322    1333332 33 


Q ss_pred             cEEEE-eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE-eecc-ccCcceE
Q 030700           81 VTVLV-SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDG-LYFANGV  157 (173)
Q Consensus        81 ~~~~~-~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~-~~~p~gi  157 (173)
                      ..... ....+. ......++++|||+++++-                 ..++.|..+|..++++.. +..+ ....+.+
T Consensus       257 ~~~~~~~~~~~~-~~~V~~~~~Spdg~~lasg-----------------s~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v  318 (365)
T 4h5i_A          257 TSVLRSKQVTNR-FKGITSMDVDMKGELAVLA-----------------SNDNSIALVKLKDLSMSKIFKQAHSFAITEV  318 (365)
T ss_dssp             EEEEEEEEEESS-CSCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTTTEEEEEETTSSSSCEEEE
T ss_pred             ecceeeeeecCC-CCCeEeEEECCCCCceEEE-----------------cCCCEEEEEECCCCcEEEEecCcccCCEEEE
Confidence            21111 111111 1346789999999977762                 245789999998887544 3343 4556899


Q ss_pred             EEccCCCEEEEE
Q 030700          158 ALSEDERFLVVC  169 (173)
Q Consensus       158 ~~~~dg~~lyv~  169 (173)
                      +|+|||++|.-+
T Consensus       319 ~fSpdg~~laS~  330 (365)
T 4h5i_A          319 TISPDSTYVASV  330 (365)
T ss_dssp             EECTTSCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            999999977644

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.82  E-value=2.1e-07  Score=68.05  Aligned_cols=130  Identities=10%  Similarity=0.013  Sum_probs=81.4

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEec-cccCccccceEEccCCcEEEEEeCCC-eEEEEcc-CC--c
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG--V   81 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g--~   81 (173)
                      -.+-.||.++ ++.||++. .+++|.++|+ +|++..-. +...... |++++.+ ++ |++.+.. .++.+|. +.  .
T Consensus        54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~l~~~~Fge-Git~~g~-~L-y~ltw~~~~v~V~D~~Tl~~~  129 (268)
T 3nok_A           54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWMERLGNIFAE-GLASDGE-RL-YQLTWTEGLLFTWSGMPPQRE  129 (268)
T ss_dssp             TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEEECTTCCEE-EEEECSS-CE-EEEESSSCEEEEEETTTTEEE
T ss_pred             ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEECCCCccee-EEEEeCC-EE-EEEEccCCEEEEEECCcCcEE
Confidence            3455799998 57999988 6678999995 56644322 2222345 6777543 66 9988664 4666775 44  3


Q ss_pred             EEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec----c--ccCc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----G--LYFA  154 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----~--~~~p  154 (173)
                      ..+.-  .    ...-+++  +|| ++|+++.+                  ++|+.+||++.++..-..    +  +..+
T Consensus       130 ~ti~~--~----~eGwGLt--~Dg~~L~vSdGs------------------~~l~~iDp~T~~v~~~I~V~~~g~~v~~l  183 (268)
T 3nok_A          130 RTTRY--S----GEGWGLC--YWNGKLVRSDGG------------------TMLTFHEPDGFALVGAVQVKLRGQPVELI  183 (268)
T ss_dssp             EEEEC--S----SCCCCEE--EETTEEEEECSS------------------SEEEEECTTTCCEEEEEECEETTEECCCE
T ss_pred             EEEeC--C----CceeEEe--cCCCEEEEECCC------------------CEEEEEcCCCCeEEEEEEeCCCCcccccc
Confidence            33321  1    1234555  444 68888633                  699999999875443322    2  3466


Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      |.|.+. +| .||++.
T Consensus       184 NeLe~~-dG-~lyanv  197 (268)
T 3nok_A          184 NELECA-NG-VIYANI  197 (268)
T ss_dssp             EEEEEE-TT-EEEEEE
T ss_pred             cccEEe-CC-EEEEEE
Confidence            888887 66 588765

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.82  E-value=1.7e-07  Score=77.24  Aligned_cols=137  Identities=12%  Similarity=0.047  Sum_probs=88.4

Q ss_pred             CCcceEEEcCCCC-EEEEcC-CC-----eEEEEcC-CCcEEEecccc-------------------------CccccceE
Q 030700           10 NHPEDVSVDGNGV-LYTATG-DG-----WIKRMHP-NGTWEDWHQVG-------------------------SQSLLGLT   56 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~-~~-----~i~~~~~-~g~~~~~~~~~-------------------------~~p~~gl~   56 (173)
                      ..+..++|+|+|+ |+++.. ++     .|+.++. +|+........                         .... .++
T Consensus        37 ~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~  115 (741)
T 2ecf_A           37 PTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV-DYQ  115 (741)
T ss_dssp             CCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESC-CCE
T ss_pred             CCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcc-eeE
Confidence            3577899999996 555554 66     7999996 45544432221                         1246 899


Q ss_pred             EccCCcEEEEEeCCCeEEEEccCCc---EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCc
Q 030700           57 TTKENNVIIVCDSQQGLLKVSEEGV---TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHG  132 (173)
Q Consensus        57 ~~~~g~l~~v~~~~~~i~~~~~~g~---~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~  132 (173)
                      |++||+.|+++.. ..++.++.++.   .. ......  ...+..++++|||+ +.++.                   ++
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~-~~l~~~--~~~~~~~~~SPDG~~la~~~-------------------~~  172 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAV-RQLTHG--EGFATDAKLSPKGGFVSFIR-------------------GR  172 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSC-CBCCCS--SSCEEEEEECTTSSEEEEEE-------------------TT
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceE-EEcccC--CcccccccCCCCCCEEEEEe-------------------CC
Confidence            9999998666654 56777774331   11 111111  13467899999998 44442                   14


Q ss_pred             eEEEEcCCCCeeEEeeccccC-----------------cceEEEccCCCEEEEEe
Q 030700          133 VLLKYDPSTNQTSLVLDGLYF-----------------ANGVALSEDERFLVVCE  170 (173)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~-----------------p~gi~~~~dg~~lyv~~  170 (173)
                      .|+.+|.++++...+......                 +.+++|||||++|+++.
T Consensus       173 ~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~  227 (741)
T 2ecf_A          173 NLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYAR  227 (741)
T ss_dssp             EEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEE
T ss_pred             cEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCEEEEEE
Confidence            799999988876655443221                 47899999999888763

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=98.82  E-value=3.6e-08  Score=75.29  Aligned_cols=118  Identities=12%  Similarity=0.079  Sum_probs=75.4

Q ss_pred             cEEEeccccCccccceEEccCCc-EEEEEeCCCeEEEEccCC-cE-EEEec--cCCccccCCccEEEcC----CCcEEEE
Q 030700           40 TWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSEEG-VT-VLVSQ--FNGSQLRFANDVIEAS----DGSLYFT  110 (173)
Q Consensus        40 ~~~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~~~~g-~~-~~~~~--~~~~~~~~~~~l~~~~----dG~~~v~  110 (173)
                      +++.+......|. +|+++++|+ + ||++....|++++.+| .. .+...  ........+++|+++|    +|.+|++
T Consensus         9 ~~~~va~~l~~P~-~i~~~pdG~~l-~V~e~~G~i~~~~~~g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~   86 (353)
T 2g8s_A            9 NVEVLQDKLDHPW-ALAFLPDNHGM-LITLRGGELRHWQAGKGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLS   86 (353)
T ss_dssp             EEEEEEEEESSEE-EEEECSTTCCE-EEEETTTEEEEEETTTEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEE
T ss_pred             EEEEEECCCCCcE-EEEEcCCCCEE-EEEeCCceEEEEeCCCceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEE
Confidence            3445555567899 999999999 8 9999877788888777 32 22221  1111124678999999    5889998


Q ss_pred             eCcCCcCcccceeeecccCCCceEEEEcCCCC-----eeEEeeccc-------cCcceEEEccCCCEEEEEe
Q 030700          111 VSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-----QTSLVLDGL-------YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~~-------~~p~gi~~~~dg~~lyv~~  170 (173)
                      +.....          ......+|+|++.+.+     ..+.+...+       ..+++|+|+||| .|||+.
T Consensus        87 ~~~~~~----------~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG-~Lyv~~  147 (353)
T 2g8s_A           87 YSEVGD----------DGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKG-YLFIAL  147 (353)
T ss_dssp             EEEECS----------SSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSS-EEEEEE
T ss_pred             EeCCCC----------CCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCC-cEEEEE
Confidence            632100          0001247888766432     233333222       346789999999 699985

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.81  E-value=3.1e-07  Score=71.97  Aligned_cols=147  Identities=11%  Similarity=0.079  Sum_probs=88.5

Q ss_pred             cCCcceEEEcCCCCEEEEc-CC------CeEEEEcCC-CcEEEecccc----CccccceEEccCCcEEEEEeC-------
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GD------GWIKRMHPN-GTWEDWHQVG----SQSLLGLTTTKENNVIIVCDS-------   69 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~------~~i~~~~~~-g~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~-------   69 (173)
                      ...|.++...|+| +|++. .+      +.|..+|.. +++....+..    ..+. .+.++++++.+|++++       
T Consensus       137 ~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Y-d~~~~p~~~~mvsS~wg~p~~~~  214 (462)
T 2ece_A          137 YSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAY-DFWWNLPNEVLVSSEWAVPNTIE  214 (462)
T ss_dssp             EEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCC-CEEEETTTTEEEECBCCCHHHHT
T ss_pred             CCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccc-eEEECCCCCEEEEccCcCccccc
Confidence            4579999999999 99876 22      689999964 6655433322    2345 5777999998777753       


Q ss_pred             ------------CCeEEEEcc-CC--cEEEEeccCCccccCCccEEE--cCCCc-EEEEeCcCCcCcccceeeecccCCC
Q 030700           70 ------------QQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIE--ASDGS-LYFTVSSTKFTPAEYYLDLVSGEPH  131 (173)
Q Consensus        70 ------------~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~--~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~  131 (173)
                                  .+.|..++. ++  ...+. .  +.....|.+|.+  +|+|+ +|+++.-            .....+
T Consensus       215 ~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~-v--g~~g~~P~~i~f~~~Pdg~~aYV~~e~------------~~~~Ls  279 (462)
T 2ece_A          215 DGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT-L--GEENRMALELRPLHDPTKLMGFINMVV------------SLKDLS  279 (462)
T ss_dssp             TCCCTTTHHHHSCCEEEEEETTTTEEEEEEE-S--CTTEEEEEEEEECSSTTCCEEEEEEEE------------ETTTCC
T ss_pred             cccchhhhhhccCCEEEEEECCCCcEeeEEe-c--CCCCCccceeEeeECCCCCEEEEEEee------------eccCCC
Confidence                        356777774 44  22222 1  111246777877  99996 7887530            000122


Q ss_pred             ceEEEEcCCCCee--EEee---c-----c-----------ccCcceEEEccCCCEEEEEecC
Q 030700          132 GVLLKYDPSTNQT--SLVL---D-----G-----------LYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       132 ~~v~~~d~~~~~~--~~~~---~-----~-----------~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +.|+++..+.++.  ..+.   .     .           ...|.+|.+|+|||+|||++.+
T Consensus       280 s~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg  341 (462)
T 2ece_A          280 SSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWG  341 (462)
T ss_dssp             EEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETT
T ss_pred             ceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCC
Confidence            4454332222321  1110   0     0           2457899999999999999864

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.79  E-value=7e-07  Score=67.19  Aligned_cols=141  Identities=11%  Similarity=0.010  Sum_probs=90.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~   85 (173)
                      ....++++.|++.++++. .++.|..||. ++... .+........ .++|+|++++++.+.....+..++. .+.. +.
T Consensus       185 ~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~-~~  262 (340)
T 1got_B          185 GDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQE-LM  262 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEE-EE
T ss_pred             CceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEE-EEEEcCCCCEEEEEcCCCcEEEEECCCCcE-EE
Confidence            346789999999877655 7889999985 45543 3433445567 9999999999444443333444453 3321 11


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDER  164 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~  164 (173)
                      .............++++|+|.++++-                 ..++.|..+|..+++...... .......++|+||++
T Consensus       263 ~~~~~~~~~~v~~~~~s~~g~~l~~g-----------------~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~  325 (340)
T 1got_B          263 TYSHDNIICGITSVSFSKSGRLLLAG-----------------YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGM  325 (340)
T ss_dssp             EECCTTCCSCEEEEEECTTSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSS
T ss_pred             EEccCCcccceEEEEECCCCCEEEEE-----------------CCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCC
Confidence            11111111245779999999877763                 234789999987665443333 345567899999998


Q ss_pred             EEEEE
Q 030700          165 FLVVC  169 (173)
Q Consensus       165 ~lyv~  169 (173)
                      +|+.+
T Consensus       326 ~l~s~  330 (340)
T 1got_B          326 AVATG  330 (340)
T ss_dssp             CEEEE
T ss_pred             EEEEE
Confidence            77654

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=98.78  E-value=4.3e-07  Score=65.73  Aligned_cols=139  Identities=16%  Similarity=0.116  Sum_probs=86.8

Q ss_pred             CCcceEEEcCCCCEE-EEc----CCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEe-CCC--eEEEEccCC
Q 030700           10 NHPEDVSVDGNGVLY-TAT----GDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQ--GLLKVSEEG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~----~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~--~i~~~~~~g   80 (173)
                      ..+.+++|+|+|..+ ++.    ....|+.++.++ ....+ ....... .++++++|+.++++. ...  .++.++.++
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~-~~~~spdg~~l~~~~~~~~~~~l~~~~~~~  162 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPRLM-TKNLPSY-WHGWSPDGKSFTYCGIRDQVFDIYSMDIDS  162 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCEEC-CSSSSEE-EEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceEEe-ecCCCcc-ceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence            345679999998644 444    246788888644 43333 2233466 889999998756443 222  355555443


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceE
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi  157 (173)
                        ...+.. .    ...+..++++|+|+ ++++...               .....|+.++..++....+.........+
T Consensus       163 ~~~~~~~~-~----~~~~~~~~~s~dg~~l~~~~~~---------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  222 (297)
T 2ojh_A          163 GVETRLTH-G----EGRNDGPDYSPDGRWIYFNSSR---------------TGQMQIWRVRVDGSSVERITDSAYGDWFP  222 (297)
T ss_dssp             CCEEECCC-S----SSCEEEEEECTTSSEEEEEECT---------------TSSCEEEEEETTSSCEEECCCCSEEEEEE
T ss_pred             CcceEccc-C----CCccccceECCCCCEEEEEecC---------------CCCccEEEECCCCCCcEEEecCCcccCCe
Confidence              332221 1    13567899999997 5555321               12358899987766666555444556679


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+||+++|+++.
T Consensus       223 ~~s~dg~~l~~~~  235 (297)
T 2ojh_A          223 HPSPSGDKVVFVS  235 (297)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCEEEEEE
Confidence            9999999887753

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.77  E-value=2.6e-06  Score=62.94  Aligned_cols=139  Identities=14%  Similarity=0.143  Sum_probs=91.1

Q ss_pred             cCCcceEEEcCCCCEEEE-cCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cE
Q 030700            9 VNHPEDVSVDGNGVLYTA-TGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~-~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~   82 (173)
                      -....+++++|+|.++++ ..++.|..|+. +++... +........ .+++++++++++.+.....+...+. .+  ..
T Consensus        23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  101 (312)
T 4ery_A           23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGIS-DVAWSSDSNLLVSASDDKTLKIWDVSSGKCLK  101 (312)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceE-EEEEcCCCCEEEEECCCCEEEEEECCCCcEEE
Confidence            345678999999876654 48888999985 555543 333344566 9999999998555544444444453 44  33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~  161 (173)
                      .+.. ..    .....++++|++.++++-.                 .++.|..+|..+++....... ......++|+|
T Consensus       102 ~~~~-~~----~~v~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  159 (312)
T 4ery_A          102 TLKG-HS----NYVFCCNFNPQSNLIVSGS-----------------FDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNR  159 (312)
T ss_dssp             EEEC-CS----SCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             EEcC-CC----CCEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCEEEEEecCCCCcEEEEEEcC
Confidence            3321 11    2457789999998777632                 347899999887765444433 34457899999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      +++.++.+.
T Consensus       160 ~~~~l~~~~  168 (312)
T 4ery_A          160 DGSLIVSSS  168 (312)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999877654

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=98.77  E-value=2.7e-07  Score=70.45  Aligned_cols=87  Identities=8%  Similarity=-0.037  Sum_probs=61.1

Q ss_pred             eEEccCCcEEEEEeC-----------CCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccc
Q 030700           55 LTTTKENNVIIVCDS-----------QQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEY  121 (173)
Q Consensus        55 l~~~~~g~l~~v~~~-----------~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~  121 (173)
                      ++++++++.+|++..           ...+..+|. ++ +.+....-+   . |.+|+++|||+ +|+++          
T Consensus       259 ~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~-~~v~~i~~~---~-p~~ia~spdg~~l~v~n----------  323 (361)
T 2oiz_A          259 VGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTK-QRVARIPGR---D-ALSMTIDQQRNLMLTLD----------  323 (361)
T ss_dssp             EEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTT-EEEEEEECT---T-CCEEEEETTTTEEEEEC----------
T ss_pred             EEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCC-cEEEEEecC---C-eeEEEECCCCCEEEEeC----------
Confidence            899999877798764           235777785 44 222222112   2 99999999997 66653          


Q ss_pred             eeeecccCCCceEEEEcCCCC--eeEEee-ccccCcceEEEccCCCE
Q 030700          122 YLDLVSGEPHGVLLKYDPSTN--QTSLVL-DGLYFANGVALSEDERF  165 (173)
Q Consensus       122 ~~~~~~~~~~~~v~~~d~~~~--~~~~~~-~~~~~p~gi~~~~dg~~  165 (173)
                              . +.|..||++++  ++.... .....|++|+++|||++
T Consensus       324 --------~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~~  361 (361)
T 2oiz_A          324 --------G-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGGT  361 (361)
T ss_dssp             --------S-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSCC
T ss_pred             --------C-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCCC
Confidence                    1 58999999998  654443 44688999999999973

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.75  E-value=5.7e-07  Score=75.10  Aligned_cols=136  Identities=10%  Similarity=0.056  Sum_probs=94.1

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEeccc------cCccccceEEccCCcEEEEEeCCCeEEEEccCC--
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQV------GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~------~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--   80 (173)
                      ....+++.|++|.||++.. +.|+++++. +++..+...      ..... +|+.+++|++ |++..+.++++++++.  
T Consensus       450 ~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~-~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~  526 (781)
T 3v9f_A          450 LDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVR-SIAQDSEGRF-WIGTFGGGVGIYTPDMQL  526 (781)
T ss_dssp             CCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEE-EEEECTTCCE-EEEESSSCEEEECTTCCE
T ss_pred             CeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeE-EEEEcCCCCE-EEEEcCCCEEEEeCCCCe
Confidence            3456788899999999887 679999864 444433221      23466 8899999999 8887767899999754  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceE-EEEcCCCCeeEEeec--cc--cCcc
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVL-LKYDPSTNQTSLVLD--GL--YFAN  155 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v-~~~d~~~~~~~~~~~--~~--~~p~  155 (173)
                      .+.+.. ..+.+......|..|++|++|++..                   ..+ +++|+++++.+....  ++  ....
T Consensus       527 ~~~~~~-~~~l~~~~i~~i~~d~~g~lWi~T~-------------------~Glv~~~d~~~~~~~~~~~~~gl~~~~i~  586 (781)
T 3v9f_A          527 VRKFNQ-YEGFCSNTINQIYRSSKGQMWLATG-------------------EGLVCFPSARNFDYQVFQRKEGLPNTHIR  586 (781)
T ss_dssp             EEEECT-TTTCSCSCEEEEEECTTSCEEEEET-------------------TEEEEESCTTTCCCEEECGGGTCSCCCCC
T ss_pred             EEEccC-CCCCCCCeeEEEEECCCCCEEEEEC-------------------CCceEEECCCCCcEEEccccCCCCCceEE
Confidence            444432 2233334567899999999999853                   245 899988776655543  22  2345


Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      +|+.+++|+ ||++
T Consensus       587 ~i~~d~~g~-lW~~  599 (781)
T 3v9f_A          587 AISEDKNGN-IWAS  599 (781)
T ss_dssp             EEEECSSSC-EEEE
T ss_pred             EEEECCCCC-EEEE
Confidence            788888886 6665

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.74  E-value=1.9e-06  Score=62.29  Aligned_cols=130  Identities=18%  Similarity=0.179  Sum_probs=81.0

Q ss_pred             cCCcceEEEcCCCCEEEEcC---CCeEEEEcC-CCcEEEeccccCc--cccceEEccCCcEEEEEeCCC-eEEEEccC-C
Q 030700            9 VNHPEDVSVDGNGVLYTATG---DGWIKRMHP-NGTWEDWHQVGSQ--SLLGLTTTKENNVIIVCDSQQ-GLLKVSEE-G   80 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~---~~~i~~~~~-~g~~~~~~~~~~~--p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~-g   80 (173)
                      -..-.||.+++ +.||++..   ...|.++|+ +|++.........  .. |++++. +++ |++.+.. .++.+|.+ .
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fge-Gi~~~~-~~l-y~ltw~~~~v~v~D~~tl   95 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGA-GIVAWR-DRL-IQLTWRNHEGFVYDLATL   95 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEE-EEEEET-TEE-EEEESSSSEEEEEETTTT
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCccee-EEEEeC-CEE-EEEEeeCCEEEEEECCcC
Confidence            45677999986 79998873   348999995 6776654443333  45 666643 355 9988664 46667754 3


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec----c--c
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----G--L  151 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----~--~  151 (173)
                        ...+.-.        ..+..+.+|| ++|++|.+                  ++|+.+||++.++.....    +  +
T Consensus        96 ~~~~ti~~~--------~~Gwglt~dg~~L~vSdgs------------------~~l~~iDp~t~~~~~~I~V~~~g~~~  149 (243)
T 3mbr_X           96 TPRARFRYP--------GEGWALTSDDSHLYMSDGT------------------AVIRKLDPDTLQQVGSIKVTAGGRPL  149 (243)
T ss_dssp             EEEEEEECS--------SCCCEEEECSSCEEEECSS------------------SEEEEECTTTCCEEEEEECEETTEEC
T ss_pred             cEEEEEeCC--------CCceEEeeCCCEEEEECCC------------------CeEEEEeCCCCeEEEEEEEccCCccc
Confidence              3333211        1233444555 69999743                  689999999865433322    1  3


Q ss_pred             cCcceEEEccCCCEEEEEe
Q 030700          152 YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..+|.|.+. +| .||++.
T Consensus       150 ~~lNeLe~~-~G-~lyanv  166 (243)
T 3mbr_X          150 DNLNELEWV-NG-ELLANV  166 (243)
T ss_dssp             CCEEEEEEE-TT-EEEEEE
T ss_pred             ccceeeEEe-CC-EEEEEE
Confidence            466777775 55 488764

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.74  E-value=9.7e-08  Score=78.48  Aligned_cols=139  Identities=9%  Similarity=-0.046  Sum_probs=88.9

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccC----ccccceEEccCCcEEEEEeCC---------CeEEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGS----QSLLGLTTTKENNVIIVCDSQ---------QGLLK   75 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~----~p~~gl~~~~~g~l~~v~~~~---------~~i~~   75 (173)
                      ..+..++|.|+|.+++++.++.|+.|+. +|+.........    ... .++|+|||+.|+++...         ..++.
T Consensus        17 ~~~~~~~~spdg~~~~~~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~-~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~   95 (723)
T 1xfd_A           17 IHDPEAKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVL   95 (723)
T ss_dssp             CCCCCCCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEE
T ss_pred             ccccccEEcCCCcEEEEeCCCCEEEEECCCCcEEEEeccccccccccc-eEEECCCCCEEEEEecCccceeecceeeEEE
Confidence            4478899999998665567788999995 455444333222    367 89999999975555332         24556


Q ss_pred             Ecc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc-
Q 030700           76 VSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-  151 (173)
Q Consensus        76 ~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-  151 (173)
                      ++. ++ ...+... .+ ....+..++++|||+ +.++.                   .+.|+.+|.++++...+.... 
T Consensus        96 ~d~~~~~~~~l~~~-~~-~~~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~g~~~~~~~~~~  154 (723)
T 1xfd_A           96 SKIPHGDPQSLDPP-EV-SNAKLQYAGWGPKGQQLIFIF-------------------ENNIYYCAHVGKQAIRVVSTGK  154 (723)
T ss_dssp             EESSSCCCEECCCT-TC-CSCCCSBCCBCSSTTCEEEEE-------------------TTEEEEESSSSSCCEEEECCCB
T ss_pred             EECCCCceEeccCC-cc-ccccccccEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEecCCC
Confidence            664 44 4333221 11 112367789999996 44442                   147999999887766555431 


Q ss_pred             c------------------CcceEEEccCCCEEEEEe
Q 030700          152 Y------------------FANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 ~------------------~p~gi~~~~dg~~lyv~~  170 (173)
                      .                  ...+++|||||+.|+++.
T Consensus       155 ~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~  191 (723)
T 1xfd_A          155 EGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (723)
T ss_dssp             TTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             CCceECcccceeEEEEeccCcceEEECCCCCEEEEEE
Confidence            1                  226799999999887753

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1e-06  Score=73.63  Aligned_cols=136  Identities=13%  Similarity=0.116  Sum_probs=94.2

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEecccc----CccccceEEccCCcEEEEEeCCCeE-EEEcc-CC-c
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQVG----SQSLLGLTTTKENNVIIVCDSQQGL-LKVSE-EG-V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~~~~i-~~~~~-~g-~   81 (173)
                      ....+++.|++|.||++...+.|+++++++ ++..+....    .... +|..+++|++ |++.. .++ .++++ ++ +
T Consensus       495 ~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~-~i~~d~~g~l-Wi~T~-~Glv~~~d~~~~~~  571 (781)
T 3v9f_A          495 NFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTIN-QIYRSSKGQM-WLATG-EGLVCFPSARNFDY  571 (781)
T ss_dssp             SCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEE-EEEECTTSCE-EEEET-TEEEEESCTTTCCC
T ss_pred             ceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeE-EEEECCCCCE-EEEEC-CCceEEECCCCCcE
Confidence            456789999999999998766799999765 444443221    2346 7888999999 88765 688 77776 44 5


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccC----cc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYF----AN  155 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~----p~  155 (173)
                      ..+. ..++.+.....++..|++|++|++..                   ..|.+++|++++.+....  ++..    ++
T Consensus       572 ~~~~-~~~gl~~~~i~~i~~d~~g~lW~~t~-------------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~  631 (781)
T 3v9f_A          572 QVFQ-RKEGLPNTHIRAISEDKNGNIWASTN-------------------TGISCYITSKKCFYTYDHSNNIPQGSFISG  631 (781)
T ss_dssp             EEEC-GGGTCSCCCCCEEEECSSSCEEEECS-------------------SCEEEEETTTTEEEEECGGGTCCSSCEEEE
T ss_pred             EEcc-ccCCCCCceEEEEEECCCCCEEEEcC-------------------CceEEEECCCCceEEecccCCccccccccC
Confidence            5543 33444445678899999999999842                   368999998777766543  2221    24


Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      .++.+++|+ ||+.
T Consensus       632 ~~~~~~~G~-l~~g  644 (781)
T 3v9f_A          632 CVTKDHNGL-IYFG  644 (781)
T ss_dssp             EEEECTTSC-EEEE
T ss_pred             ceEECCCCE-EEEE
Confidence            577788887 5654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.73  E-value=2.1e-06  Score=65.78  Aligned_cols=143  Identities=13%  Similarity=0.069  Sum_probs=91.9

Q ss_pred             CCcceEEEcCCC-CEEEE-cCCCeEEEEcC-CCcEE-Ee--ccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--
Q 030700           10 NHPEDVSVDGNG-VLYTA-TGDGWIKRMHP-NGTWE-DW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--   80 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~-~~~~~i~~~~~-~g~~~-~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--   80 (173)
                      ....++++.|++ .++++ ..++.|..||. +++.. .+  ........ .+++++++++++++.....+..++. .+  
T Consensus       132 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  210 (402)
T 2aq5_A          132 KRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIY-SVDWSRDGALICTSCRDKRVRVIEPRKGTV  210 (402)
T ss_dssp             SCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEE-EEEECTTSSCEEEEETTSEEEEEETTTTEE
T ss_pred             CeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceE-EEEECCCCCEEEEEecCCcEEEEeCCCCce
Confidence            456789999987 56654 48899999995 44443 33  23445567 9999999988565554545555564 45  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEe-eccccCcceE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLV-LDGLYFANGV  157 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~-~~~~~~p~gi  157 (173)
                      ...+.....+   ..+..++++|+|.++++-..              ...++.|..+|..+++.  ... .........+
T Consensus       211 ~~~~~~~~~~---~~~~~~~~~~~~~~l~~g~~--------------~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~  273 (402)
T 2aq5_A          211 VAEKDRPHEG---TRPVHAVFVSEGKILTTGFS--------------RMSERQVALWDTKHLEEPLSLQELDTSSGVLLP  273 (402)
T ss_dssp             EEEEECSSCS---SSCCEEEECSTTEEEEEEEC--------------TTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred             eeeeccCCCC---CcceEEEEcCCCcEEEEecc--------------CCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence            2222122111   24688999999987766311              12457899999876542  111 2334556789


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|+++.|+++-
T Consensus       274 ~~s~~~~~l~~~g  286 (402)
T 2aq5_A          274 FFDPDTNIVYLCG  286 (402)
T ss_dssp             EEETTTTEEEEEE
T ss_pred             EEcCCCCEEEEEE
Confidence            9999999998764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.73  E-value=1.1e-06  Score=73.60  Aligned_cols=133  Identities=12%  Similarity=0.136  Sum_probs=91.5

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEec---c----ccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWH---Q----VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-   80 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~---~----~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-   80 (173)
                      ...+++.|++|.||++.. +.|++++++. +. .+.   .    ...... +|..|++|++ |++... ++.++++. + 
T Consensus       499 ~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~-~i~~d~~g~l-WigT~~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          499 QITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI-QKASILPVSNVTKLFTN-CIYEASNGII-WVGTRE-GFYCFNEKDKQ  573 (795)
T ss_dssp             CEEEEEECTTCCEEEEES-SCEEEEEEETTEE-EECCCSCSCGGGGSCEE-EEEECTTSCE-EEEESS-CEEEEETTTTE
T ss_pred             eEEEEEECCCCCEEEEeC-CceEEEeCCCCeE-EEecCCCCCCCCCCeeE-EEEECCCCCE-EEEeCC-CceeECCCCCc
Confidence            456788999999999887 6799998644 44 322   1    112356 7888999999 887665 89999964 4 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccC----c
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYF----A  154 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~----p  154 (173)
                      ++.+ ...++.+......+..|++|++|++..                   +.|.++++++++.+....  ++..    .
T Consensus       574 ~~~~-~~~~gl~~~~i~~i~~d~~g~lWi~t~-------------------~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~  633 (795)
T 4a2l_A          574 IKRY-NTTNGLPNNVVYGILEDSFGRLWLSTN-------------------RGISCFNPETEKFRNFTESDGLQSNQFNT  633 (795)
T ss_dssp             EEEE-CGGGTCSCSCEEEEEECTTSCEEEEET-------------------TEEEEEETTTTEEEEECGGGTCSCSCEEE
T ss_pred             EEEe-CCCCCCchhheEEEEECCCCCEEEEcC-------------------CceEEEcCCCCcEEEcCCcCCCccccCcc
Confidence            5544 233444444567799999999999852                   478999998877765543  2221    2


Q ss_pred             ceEEEccCCCEEEEE
Q 030700          155 NGVALSEDERFLVVC  169 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~  169 (173)
                      ++++.+++|+ ||++
T Consensus       634 ~~~~~~~~G~-l~~g  647 (795)
T 4a2l_A          634 ASYCRTSVGQ-MYFG  647 (795)
T ss_dssp             EEEEECTTSC-EEEE
T ss_pred             CceeECCCCe-EEEe
Confidence            4677788886 6654

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=98.73  E-value=1.1e-06  Score=67.55  Aligned_cols=111  Identities=5%  Similarity=-0.071  Sum_probs=70.2

Q ss_pred             EcCCC-CEEEEcC-C-C---eEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC----------CCeEEEEcc-
Q 030700           17 VDGNG-VLYTATG-D-G---WIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS----------QQGLLKVSE-   78 (173)
Q Consensus        17 ~~~~g-~l~~~~~-~-~---~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~----------~~~i~~~~~-   78 (173)
                      ..+++ .+|+++. . .   .|+.+|. +++.....+.+..|  ++++++||+.+|+++.          .+.+..+|. 
T Consensus        28 ~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~  105 (373)
T 2mad_H           28 PGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPV  105 (373)
T ss_pred             CCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECC
Confidence            33565 6898884 3 2   7789986 45554433444444  8999999999999974          234667775 


Q ss_pred             CC--cEEEEeccCCcc--ccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           79 EG--VTVLVSQFNGSQ--LRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~--~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      +.  ...+........  ...|.+++++|||+ +|+++..                .++.|..+| +++++..
T Consensus       106 t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~----------------~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H          106 TFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             CCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC----------------CCCeEEEEE-CCCCEEe
Confidence            33  232221101111  24689999999996 7888532                235799999 8876543

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.73  E-value=1.3e-06  Score=71.77  Aligned_cols=145  Identities=10%  Similarity=0.058  Sum_probs=86.6

Q ss_pred             CcceEEEcCCCC-EEEEc---------------------------------CCCeEEEEcCCC-cEEEecc---ccCccc
Q 030700           11 HPEDVSVDGNGV-LYTAT---------------------------------GDGWIKRMHPNG-TWEDWHQ---VGSQSL   52 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~---------------------------------~~~~i~~~~~~g-~~~~~~~---~~~~p~   52 (173)
                      .+.+++|+|+|+ |+++.                                 .+..|+.++.++ +...+..   ....+.
T Consensus       182 ~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~  261 (706)
T 2z3z_A          182 IEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLT  261 (706)
T ss_dssp             CCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEE
T ss_pred             CCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEe
Confidence            358999999985 55543                                 235688888654 4333321   123456


Q ss_pred             cceEEccCCcEEEEEeCCC-----eEEEEcc-CC--cEEEEeccCCccccCCccEEEcC--CCcEEEEeCcCCcCcccce
Q 030700           53 LGLTTTKENNVIIVCDSQQ-----GLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEAS--DGSLYFTVSSTKFTPAEYY  122 (173)
Q Consensus        53 ~gl~~~~~g~l~~v~~~~~-----~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~--dG~~~v~~~~~~~~~~~~~  122 (173)
                       .++|++||+.++++....     .++.++. +|  ...+............+.++++|  ||+++++...         
T Consensus       262 -~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~---------  331 (706)
T 2z3z_A          262 -NLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR---------  331 (706)
T ss_dssp             -EEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT---------
T ss_pred             -eEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc---------
Confidence             899999999756643221     4666774 44  23332211111111246789999  9986554322         


Q ss_pred             eeecccCCCceEEEEcCCCCeeEEeeccccCcce-EEEccCCCEEEEEec
Q 030700          123 LDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANG-VALSEDERFLVVCES  171 (173)
Q Consensus       123 ~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~g-i~~~~dg~~lyv~~~  171 (173)
                            .....|+.++.+++..+.+..+...... ++|+||++.||++..
T Consensus       332 ------~g~~~l~~~~~~~~~~~~l~~~~~~v~~~~~~spdg~~l~~~~~  375 (706)
T 2z3z_A          332 ------DGWNHLYLYDTTGRLIRQVTKGEWEVTNFAGFDPKGTRLYFEST  375 (706)
T ss_dssp             ------TSSCEEEEEETTSCEEEECCCSSSCEEEEEEECTTSSEEEEEES
T ss_pred             ------CCccEEEEEECCCCEEEecCCCCeEEEeeeEEcCCCCEEEEEec
Confidence                  1225899999765666555443333334 799999999988643

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.72  E-value=7.7e-07  Score=71.88  Aligned_cols=148  Identities=10%  Similarity=0.087  Sum_probs=89.8

Q ss_pred             CC-CEEEEc-CCCeEEEEcCCC-cEEEe--ccccCccccceEE-c-cCCcEEEEEeC-----------------CC-eEE
Q 030700           20 NG-VLYTAT-GDGWIKRMHPNG-TWEDW--HQVGSQSLLGLTT-T-KENNVIIVCDS-----------------QQ-GLL   74 (173)
Q Consensus        20 ~g-~l~~~~-~~~~i~~~~~~g-~~~~~--~~~~~~p~~gl~~-~-~~g~l~~v~~~-----------------~~-~i~   74 (173)
                      +| .||+++ .+.+|.++|.+. +...+  .+.+..|+ |+++ . |+++++|++..                 +. .+-
T Consensus       100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~ph-g~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt  178 (595)
T 1fwx_A          100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  178 (595)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred             CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCc-ceeeeecCCCcEEEEecccccccCCCCcccccccccCceEE
Confidence            66 699988 678899999765 44442  23356799 9998 4 88888777742                 11 234


Q ss_pred             EEccCCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcc---------cce--------eeecccC---CCce
Q 030700           75 KVSEEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------EYY--------LDLVSGE---PHGV  133 (173)
Q Consensus        75 ~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~---------~~~--------~~~~~~~---~~~~  133 (173)
                      .+|.+..+......-+   ..|++++++|+|+ +|+++.....+..         .+.        ...+...   .-+.
T Consensus       179 vID~~t~~v~~qI~Vg---g~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~  255 (595)
T 1fwx_A          179 AVDADKWEVAWQVLVS---GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNG  255 (595)
T ss_dssp             EEETTTTEEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETT
T ss_pred             EEECCCCeEEEEEEeC---CCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECc
Confidence            4454332222222111   2689999999996 7888754322110         000        0000000   0145


Q ss_pred             EEEEcCCC--Cee-EEeeccccCcceEEEccCCCEEEEEec
Q 030700          134 LLKYDPST--NQT-SLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       134 v~~~d~~~--~~~-~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      |..+|..+  ++. .........|.|+.++|||+++||++-
T Consensus       256 V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V~~~  296 (595)
T 1fwx_A          256 VKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK  296 (595)
T ss_dssp             EEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             EEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEEeCC
Confidence            88999886  433 333444578999999999999999874

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=98.71  E-value=2.4e-07  Score=73.04  Aligned_cols=123  Identities=9%  Similarity=0.054  Sum_probs=75.5

Q ss_pred             cEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEcc-CC-cEEEEeccCCc----cccCCccEEEcC----CCcEE
Q 030700           40 TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-EG-VTVLVSQFNGS----QLRFANDVIEAS----DGSLY  108 (173)
Q Consensus        40 ~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~g-~~~~~~~~~~~----~~~~~~~l~~~~----dG~~~  108 (173)
                      +++.+......|. +|+++++|++ ||++... .|++++. +| .+.+.......    ....+.+|+++|    +|.||
T Consensus        18 ~~~~~a~~l~~P~-~~a~~pdG~l-~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lY   95 (454)
T 1cru_A           18 DKKVILSNLNKPH-ALLWGPDNQI-WLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIY   95 (454)
T ss_dssp             CEEEEECCCSSEE-EEEECTTSCE-EEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEE
T ss_pred             EEEEEECCCCCce-EEEEcCCCcE-EEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEE
Confidence            3445555567899 9999999998 9998775 5888886 56 55544322110    124567999999    67899


Q ss_pred             EEeCcCCcCcccceeeecccCCCceEEEEcCCCC-----eeEEeecc-----ccCcceEEEccCCCEEEEEe
Q 030700          109 FTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-----QTSLVLDG-----LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       109 v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-----~~~~~~~~-----~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ++..........     .......+|+|++.+.+     ..+.+...     ...+++|+|+|||+ |||+.
T Consensus        96 v~~s~~~~~~~~-----~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~  161 (454)
T 1cru_A           96 ISGTFKNPKSTD-----KELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTI  161 (454)
T ss_dssp             EEEEEECTTC-------CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEE
T ss_pred             EEEeccccCCCc-----cccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEE
Confidence            986320000000     00001247888875421     22333321     34578999999996 99984

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.71  E-value=3e-06  Score=63.87  Aligned_cols=142  Identities=12%  Similarity=0.074  Sum_probs=85.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcE---EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTW---EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~---~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      ....+++|+|+|.++++. .++.+..|+.+ +..   ..+........ .++|++++++|+.+.....+...+. .+ ..
T Consensus        62 ~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~  140 (345)
T 3fm0_A           62 RTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVK-SVAWAPSGNLLATCSRDKSVWVWEVDEEDEY  140 (345)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECTTSCE
T ss_pred             CcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCce-EEEEeCCCCEEEEEECCCeEEEEECCCCCCe
Confidence            456789999998766544 78888888743 322   22333344567 9999999999555544444544443 33 22


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE---EeeccccCcceEEE
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS---LVLDGLYFANGVAL  159 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~---~~~~~~~~p~gi~~  159 (173)
                      .......+. ......++++|+|.++++-.                 .++.|..++..+++..   .+.........|+|
T Consensus       141 ~~~~~~~~h-~~~v~~~~~~p~~~~l~s~s-----------------~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~  202 (345)
T 3fm0_A          141 ECVSVLNSH-TQDVKHVVWHPSQELLASAS-----------------YDDTVKLYREEEDDWVCCATLEGHESTVWSLAF  202 (345)
T ss_dssp             EEEEEECCC-CSCEEEEEECSSSSCEEEEE-----------------TTSCEEEEEEETTEEEEEEEECCCSSCEEEEEE
T ss_pred             EEEEEecCc-CCCeEEEEECCCCCEEEEEe-----------------CCCcEEEEEecCCCEEEEEEecCCCCceEEEEE
Confidence            222222111 12457799999998666532                 3356777776555422   12223455678999


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +|++++|+.+.
T Consensus       203 sp~g~~l~s~s  213 (345)
T 3fm0_A          203 DPSGQRLASCS  213 (345)
T ss_dssp             CTTSSEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            99999877653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.71  E-value=2.4e-06  Score=63.20  Aligned_cols=140  Identities=10%  Similarity=0.036  Sum_probs=88.0

Q ss_pred             CccCCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--
Q 030700            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--   80 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--   80 (173)
                      +--....+++|+|+|.+.++. .++.|..|+.. +.... +........ .++|.+++++++.+.....+...+. ++  
T Consensus        11 ~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~   89 (304)
T 2ynn_A           11 NRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEK   89 (304)
T ss_dssp             EECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCE
T ss_pred             CCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEE-EEEEeCCCCEEEEECCCCEEEEEECCCCcE
Confidence            334567899999999766544 88999999864 44333 322333455 8899999998555544444544553 45  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeecc-ccCcceEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLDG-LYFANGVA  158 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~~-~~~p~gi~  158 (173)
                      ...+.. ..    .....++++|++.++++-                 ..++.|..+|.+++ .+.....+ ......++
T Consensus        90 ~~~~~~-h~----~~v~~~~~~~~~~~l~sg-----------------s~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~  147 (304)
T 2ynn_A           90 VVDFEA-HP----DYIRSIAVHPTKPYVLSG-----------------SDDLTVKLWNWENNWALEQTFEGHEHFVMCVA  147 (304)
T ss_dssp             EEEEEC-CS----SCEEEEEECSSSSEEEEE-----------------ETTSCEEEEEGGGTTEEEEEECCCCSCEEEEE
T ss_pred             EEEEeC-CC----CcEEEEEEcCCCCEEEEE-----------------CCCCeEEEEECCCCcchhhhhcccCCcEEEEE
Confidence            333321 11    356789999999877763                 23478888887655 33333333 44557899


Q ss_pred             Ecc-CCCEEEEE
Q 030700          159 LSE-DERFLVVC  169 (173)
Q Consensus       159 ~~~-dg~~lyv~  169 (173)
                      |+| +++.|+.+
T Consensus       148 ~~p~~~~~l~sg  159 (304)
T 2ynn_A          148 FNPKDPSTFASG  159 (304)
T ss_dssp             ECTTCTTEEEEE
T ss_pred             ECCCCCCEEEEE
Confidence            998 56655544

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=98.70  E-value=1.7e-06  Score=72.33  Aligned_cols=137  Identities=12%  Similarity=0.202  Sum_probs=94.8

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEeccc---------cCccccceEEccCCc-EEEEEeCCCeEEEEcc-C
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQV---------GSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE-E   79 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~---------~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~~~-~   79 (173)
                      ..+++.|++|.||++..++.|.++++. ++...+...         ..... .++.+++|+ + |++....++.+++. .
T Consensus       359 V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~-~i~~d~~g~~l-Wigt~~~Gl~~~d~~~  436 (795)
T 4a2l_A          359 VSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK-AVYVDEKKSLV-YIGTHAGGLSILHRNS  436 (795)
T ss_dssp             EEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE-EEEEETTTTEE-EEEETTTEEEEEETTT
T ss_pred             eEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE-EEEEcCCCCEE-EEEeCcCceeEEeCCC
Confidence            567888999999999877789999964 455544211         23456 788889999 7 98877779999996 4


Q ss_pred             C-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-----c--
Q 030700           80 G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-----L--  151 (173)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-----~--  151 (173)
                      + ...+.......+...+..+..+++|++|++..                   +.|+++++++++.+.....     +  
T Consensus       437 ~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-------------------~Gl~~~~~~~~~~~~~~~~~~~~~~~~  497 (795)
T 4a2l_A          437 GQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL-------------------SALVRFNPEQRSFTTIEKEKDGTPVVS  497 (795)
T ss_dssp             CCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES-------------------SCEEEEETTTTEEEECCBCTTCCBCCC
T ss_pred             CcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec-------------------CceeEEeCCCCeEEEccccccccccCC
Confidence            5 55553211111224567889999999999842                   3689999987776655421     1  


Q ss_pred             cCcceEEEccCCCEEEEEe
Q 030700          152 YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~  170 (173)
                      .....|..+++|+ ||++.
T Consensus       498 ~~i~~i~~d~~g~-lWigt  515 (795)
T 4a2l_A          498 KQITTLFRDSHKR-LWIGG  515 (795)
T ss_dssp             CCEEEEEECTTCC-EEEEE
T ss_pred             ceEEEEEECCCCC-EEEEe
Confidence            2345678888886 66654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=98.70  E-value=3.2e-07  Score=70.78  Aligned_cols=125  Identities=13%  Similarity=0.067  Sum_probs=85.5

Q ss_pred             EEEc-CCCCEEEEcCCCeEEEEcCCCcE-EE---ec---c----ccCccc--cceEEccCCcEEEEEeC----------C
Q 030700           15 VSVD-GNGVLYTATGDGWIKRMHPNGTW-ED---WH---Q----VGSQSL--LGLTTTKENNVIIVCDS----------Q   70 (173)
Q Consensus        15 l~~~-~~g~l~~~~~~~~i~~~~~~g~~-~~---~~---~----~~~~p~--~gl~~~~~g~l~~v~~~----------~   70 (173)
                      ++++ ++|++++....+.++.+|..+.. ..   +.   .    .+..|.  ..++++++++.+|++..          .
T Consensus       231 ~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~  310 (386)
T 3sjl_D          231 PAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTAS  310 (386)
T ss_dssp             CEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCE
T ss_pred             ceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEeccccccccCCCC
Confidence            3555 58876655557889999875532 11   11   0    122233  03788988888799863          2


Q ss_pred             CeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCc--EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           71 QGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGS--LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        71 ~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~--~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      +.+..+|. ++  +..+...      ..+++|++++||+  +|+++.                 .++.|..+|..++++.
T Consensus       311 ~~V~viD~~t~kv~~~i~vg------~~~~~lavs~D~~~~ly~tn~-----------------~~~~VsViD~~t~k~~  367 (386)
T 3sjl_D          311 RFVVVLDAKTGERLAKFEMG------HEIDSINVSQDEKPLLYALST-----------------GDKTLYIHDAESGEEL  367 (386)
T ss_dssp             EEEEEEETTTCCEEEEEEEE------EEECEEEECSSSSCEEEEEET-----------------TTTEEEEEETTTCCEE
T ss_pred             CEEEEEECCCCeEEEEEECC------CCcceEEECCCCCeEEEEEcC-----------------CCCeEEEEECCCCcEE
Confidence            45888885 55  3333221      3678999999995  677653                 3479999999999887


Q ss_pred             EeeccccCcceEEEccC
Q 030700          146 LVLDGLYFANGVALSED  162 (173)
Q Consensus       146 ~~~~~~~~p~gi~~~~d  162 (173)
                      .-......||.|++++|
T Consensus       368 ~~i~~~~~p~~l~~s~d  384 (386)
T 3sjl_D          368 RSVNQLGHGPQVITTAD  384 (386)
T ss_dssp             EEECCCCSSCCEEEECC
T ss_pred             EEecCCCCCceeEECCc
Confidence            77888899999999998

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=98.70  E-value=8.5e-07  Score=72.79  Aligned_cols=157  Identities=13%  Similarity=0.098  Sum_probs=93.9

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-C-----C-c
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-E-----G-V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~-----g-~   81 (173)
                      ..+.+++++|++.+.++ .++.|+.++.+ ++...+........ .++++|||+.++++ ....|+.++. .     | .
T Consensus        82 ~~v~~~~~spd~~~~~~-~~~~i~~~d~~~~~~~~l~~~~~~~~-~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~  158 (706)
T 2z3z_A           82 FPSFRTLDAGRGLVVLF-TQGGLVGFDMLARKVTYLFDTNEETA-SLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRA  158 (706)
T ss_dssp             CCCEEEEETTTTEEEEE-ETTEEEEEETTTTEEEEEECCTTCCT-TCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCC
T ss_pred             cCceeEEECCCCeEEEE-ECCEEEEEECCCCceEEccCCccccc-CCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCc
Confidence            45788999999655555 34889999964 45544444445567 89999999875554 3456777773 5     6 3


Q ss_pred             EEEEeccCCc----------cccCCccEEEcCCCc-EEEEeCcCCcCcccce-----------ee--e-c--ccCCCceE
Q 030700           82 TVLVSQFNGS----------QLRFANDVIEASDGS-LYFTVSSTKFTPAEYY-----------LD--L-V--SGEPHGVL  134 (173)
Q Consensus        82 ~~~~~~~~~~----------~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~-----------~~--~-~--~~~~~~~v  134 (173)
                      ..+.......          .+..+..++++|||+ |+++.... .....+.           ..  + .  .......|
T Consensus       159 ~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~-~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          159 IAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQ-SMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             EESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEEC-TTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             EEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECC-CCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            3322111110          012358999999997 44442110 0000000           00  0 0  01234689


Q ss_pred             EEEcCCCCeeEEeecc---ccCcceEEEccCCCEEEEEe
Q 030700          135 LKYDPSTNQTSLVLDG---LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       135 ~~~d~~~~~~~~~~~~---~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +.+|.++++...+...   ...+..++|+|||+.|+++.
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~  276 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAE  276 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEE
Confidence            9999998877655432   23456899999999888854

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.70  E-value=2.1e-07  Score=76.60  Aligned_cols=136  Identities=10%  Similarity=-0.021  Sum_probs=86.1

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEeccccC----ccccceEEccCCcEEEEEeC---------CCeEEEE
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVGS----QSLLGLTTTKENNVIIVCDS---------QQGLLKV   76 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~~----~p~~gl~~~~~g~l~~v~~~---------~~~i~~~   76 (173)
                      .+.+++|.|+|.++++..++.|+.++.+ |+...+.....    ... .++++|||+.|+++..         ...++.+
T Consensus        17 ~~~~~~~s~dg~~~~~~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~-~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~   95 (719)
T 1z68_A           17 KTFFPNWISGQEYLHQSADNNIVLYNIETGQSYTILSNRTMKSVNAS-NYGLSPDRQFVYLESDYSKLWRYSYTATYYIY   95 (719)
T ss_dssp             CCCCCEESSSSEEEEECTTSCEEEEESSSCCEEEEECHHHHHTTTCS-EEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred             CCCccEECCCCeEEEEcCCCCEEEEEcCCCcEEEEEcccccccccee-eEEECCCCCeEEEEecCceeEEeecceEEEEE
Confidence            3558899999977767678899999964 45444433222    256 8999999997555543         1245555


Q ss_pred             ccC-CcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc---
Q 030700           77 SEE-GVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL---  151 (173)
Q Consensus        77 ~~~-g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---  151 (173)
                      +.+ |...-.....    .....++++|||+ |.++.                   ++.|+.++..+++...+....   
T Consensus        96 d~~~g~~~~~~~l~----~~~~~~~~SPDG~~la~~~-------------------~~~i~~~~~~~g~~~~l~~~~~~~  152 (719)
T 1z68_A           96 DLSNGEFVRGNELP----RPIQYLCWSPVGSKLAYVY-------------------QNNIYLKQRPGDPPFQITFNGREN  152 (719)
T ss_dssp             ETTTTEECCSSCCC----SSBCCEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCCCCBTT
T ss_pred             ECCCCccccceecC----cccccceECCCCCEEEEEE-------------------CCeEEEEeCCCCCcEEEecCCCcC
Confidence            643 3210000111    2467899999997 44442                   258999998877665543221   


Q ss_pred             ----------------cCcceEEEccCCCEEEEEe
Q 030700          152 ----------------YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 ----------------~~p~gi~~~~dg~~lyv~~  170 (173)
                                      ....+++|||||+.|+++.
T Consensus       153 ~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~  187 (719)
T 1z68_A          153 KIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAE  187 (719)
T ss_dssp             TEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEE
T ss_pred             CeEcccccceeeeecccCcccEEECCCCCEEEEEE
Confidence                            1124899999999887753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.68  E-value=3.9e-06  Score=64.35  Aligned_cols=137  Identities=11%  Similarity=0.037  Sum_probs=86.8

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEe-cccc------------------CccccceEEccCCcEEEEEeCC
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDW-HQVG------------------SQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~-~~~~------------------~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ...+++|+|+|.++++..++.+..|+. +|+.... ....                  .... .++|+++|++++.+...
T Consensus        66 ~V~~v~fspdg~~la~g~~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~dg~~l~s~~~d  144 (393)
T 1erj_A           66 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  144 (393)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEcCCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEE-EEEECCCCCEEEEEcCC
Confidence            356899999998887766677777773 5554322 1110                  1245 89999999985555444


Q ss_pred             CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           71 QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        71 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      ..+..++. ++ .........    .....++++|+|..+++..                 .++.|..+|..+++.....
T Consensus       145 ~~i~iwd~~~~~~~~~~~~h~----~~v~~~~~~p~~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~~  203 (393)
T 1erj_A          145 RLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSLTL  203 (393)
T ss_dssp             SCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCcEEEEEccCC----CCEEEEEEcCCCCEEEEec-----------------CCCcEEEEECCCCeeEEEE
Confidence            44544554 44 222222111    3467899999998766532                 3478999999888765555


Q ss_pred             ccccCcceEEEcc-CCCEEEEE
Q 030700          149 DGLYFANGVALSE-DERFLVVC  169 (173)
Q Consensus       149 ~~~~~p~gi~~~~-dg~~lyv~  169 (173)
                      ........++++| +++.++.+
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~  225 (393)
T 1erj_A          204 SIEDGVTTVAVSPGDGKYIAAG  225 (393)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEE
T ss_pred             EcCCCcEEEEEECCCCCEEEEE
Confidence            4445567889998 78876654

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=98.67  E-value=2.3e-06  Score=65.23  Aligned_cols=143  Identities=13%  Similarity=0.076  Sum_probs=85.2

Q ss_pred             cceEEEcCCCCEE-EEc--CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEe
Q 030700           12 PEDVSVDGNGVLY-TAT--GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~-~~~--~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~   86 (173)
                      ...++|.|+|.+. ++.  .++.|..||. +++............ .++|+|+|++ +++...+++..++. ++......
T Consensus       136 ~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~~~V~-~v~fspdg~~-l~s~s~~~~~~~~~~~~~~~~~~  213 (365)
T 4h5i_A          136 TKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETRGEVK-DLHFSTDGKV-VAYITGSSLEVISTVTGSCIARK  213 (365)
T ss_dssp             EEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECSSCCC-EEEECTTSSE-EEEECSSCEEEEETTTCCEEEEE
T ss_pred             EEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCCCceE-EEEEccCCce-EEeccceeEEEEEeccCcceeee
Confidence            5679999999654 433  5678888985 444433334455677 9999999999 44444556777664 55222111


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE-----eeccccCcceEEEcc
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-----VLDGLYFANGVALSE  161 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-----~~~~~~~p~gi~~~~  161 (173)
                      ...+. ......++++|+|..+++....             ......++.++........     +.......+.++|+|
T Consensus       214 ~~~~~-~~~v~~v~fspdg~~l~~~s~d-------------~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp  279 (365)
T 4h5i_A          214 TDFDK-NWSLSKINFIADDTVLIAASLK-------------KGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM  279 (365)
T ss_dssp             CCCCT-TEEEEEEEEEETTEEEEEEEES-------------SSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT
T ss_pred             ecCCC-CCCEEEEEEcCCCCEEEEEecC-------------CcceeEEeecccccceecceeeeeecCCCCCeEeEEECC
Confidence            11111 1345779999999876653210             0111245566654443221     222344567899999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ||++|..+.
T Consensus       280 dg~~lasgs  288 (365)
T 4h5i_A          280 KGELAVLAS  288 (365)
T ss_dssp             TSCEEEEEE
T ss_pred             CCCceEEEc
Confidence            999887653

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.66  E-value=5e-07  Score=68.64  Aligned_cols=149  Identities=10%  Similarity=0.019  Sum_probs=85.8

Q ss_pred             CcceEEEcC-CCC-EEEEc-C-----CCeEEEEcCCCc-EEEecccc--CccccceEEccCCcEE-EEEeCCC----eEE
Q 030700           11 HPEDVSVDG-NGV-LYTAT-G-----DGWIKRMHPNGT-WEDWHQVG--SQSLLGLTTTKENNVI-IVCDSQQ----GLL   74 (173)
Q Consensus        11 ~p~~l~~~~-~g~-l~~~~-~-----~~~i~~~~~~g~-~~~~~~~~--~~p~~gl~~~~~g~l~-~v~~~~~----~i~   74 (173)
                      ....++++| +|. |.+.. .     ...|+.++.++. ...+....  .... .++|++||+.| |++....    .++
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~  267 (388)
T 3pe7_A          189 WLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCT-HEFWVPDGSALVYVSYLKGSPDRFIY  267 (388)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEE-EEEECTTSSCEEEEEEETTCCCEEEE
T ss_pred             cccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccc-cceECCCCCEEEEEecCCCCCcceEE
Confidence            356789999 885 44433 2     347999987654 33333322  1345 78899999853 5554321    277


Q ss_pred             EEcc-CC-cEEEEeccCC--ccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec
Q 030700           75 KVSE-EG-VTVLVSQFNG--SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD  149 (173)
Q Consensus        75 ~~~~-~g-~~~~~~~~~~--~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~  149 (173)
                      .++. .| .+.+.. ..+  .....+.+++++|||+ ++++.... .        .........|+++|+++++.+.+..
T Consensus       268 ~~d~~~g~~~~l~~-~~~~~~~~~~~~~~~~spdg~~l~~~~~~~-~--------~~~~~~~~~i~~~d~~~~~~~~l~~  337 (388)
T 3pe7_A          268 SADPETLENRQLTS-MPACSHLMSNYDGSLMVGDGSDAPVDVQDD-S--------GYKIENDPFLYVFNMKNGTQHRVAR  337 (388)
T ss_dssp             EECTTTCCEEEEEE-ECCEEEEEECTTSSEEEEEECCC---------------------CCCCEEEEEETTTTEEEEEEE
T ss_pred             EEecCCCceEEEEc-CCCceeeeecCCCCeEccCCCcceeEeeec-c--------ccccCCCCEEEEEeccCCceEEecc
Confidence            8885 45 444432 221  0112356668888886 44432100 0        0001234589999999888777665


Q ss_pred             ccc-----------CcceEEEccCCCEEEEEe
Q 030700          150 GLY-----------FANGVALSEDERFLVVCE  170 (173)
Q Consensus       150 ~~~-----------~p~gi~~~~dg~~lyv~~  170 (173)
                      ...           ....++|+|||+.|+++.
T Consensus       338 ~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s  369 (388)
T 3pe7_A          338 HDTSWKVFEGDRQVTHPHPSFTPDDKQILFTS  369 (388)
T ss_dssp             CCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             ccCcccccccccccCCCCccCCCCCCEEEEEe
Confidence            443           456789999999888753

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=98.66  E-value=1.7e-06  Score=65.26  Aligned_cols=139  Identities=12%  Similarity=0.102  Sum_probs=83.3

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEE---Ee-ccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWE---DW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~---~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      ....++|+|+|.++++. .++.|..|+.++ ...   .. ........ .++|+++|++|+.+.....+...+. .+ .+
T Consensus        18 ~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~   96 (345)
T 3fm0_A           18 RCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVR-KVAWSPCGNYLASASFDATTCIWKKNQDDFE   96 (345)
T ss_dssp             CEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEE-EEEECTTSSEEEEEETTSCEEEEEECCC-EE
T ss_pred             cEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEE-EEEECCCCCEEEEEECCCcEEEEEccCCCeE
Confidence            34579999999766554 888898888544 322   11 12234566 8999999998555544433443343 33 22


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee---E-EeeccccCcceEE
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT---S-LVLDGLYFANGVA  158 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~---~-~~~~~~~~p~gi~  158 (173)
                      .+. .+.+. ......++++|+|+++++..                 .++.|..+|..++..   . .+.......+.++
T Consensus        97 ~~~-~~~~h-~~~v~~v~~sp~~~~l~s~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~  157 (345)
T 3fm0_A           97 CVT-TLEGH-ENEVKSVAWAPSGNLLATCS-----------------RDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVV  157 (345)
T ss_dssp             EEE-EECCC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEEECTTSCEEEEEEECCCCSCEEEEE
T ss_pred             EEE-EccCC-CCCceEEEEeCCCCEEEEEE-----------------CCCeEEEEECCCCCCeEEEEEecCcCCCeEEEE
Confidence            222 12221 13568899999998777632                 346777777654421   1 1222234457899


Q ss_pred             EccCCCEEEEE
Q 030700          159 LSEDERFLVVC  169 (173)
Q Consensus       159 ~~~dg~~lyv~  169 (173)
                      |+|+++.|+.+
T Consensus       158 ~~p~~~~l~s~  168 (345)
T 3fm0_A          158 WHPSQELLASA  168 (345)
T ss_dssp             ECSSSSCEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999877654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.65  E-value=2.2e-06  Score=64.03  Aligned_cols=143  Identities=14%  Similarity=0.050  Sum_probs=90.3

Q ss_pred             CCcceEEEcCCCCEEE-EcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC-----CeEEEEcc--CC
Q 030700           10 NHPEDVSVDGNGVLYT-ATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVSE--EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----~~i~~~~~--~g   80 (173)
                      ....+++++|++.+++ +..++.|..|+. +++............ .+++++++++++++...     ..+..++.  ..
T Consensus        75 ~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~  153 (369)
T 3zwl_B           75 GTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVK-RVEFSPCGNYFLAILDNVMKNPGSINIYEIERDS  153 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSSEEEEEECCBTTBCCEEEEEEEEECT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCeE-EEEEccCCCEEEEecCCccCCCCEEEEEEecCCc
Confidence            4567899999886554 448889999985 455544434555677 99999999995655543     34444442  22


Q ss_pred             -cEEEEeccC--------CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeec-
Q 030700           81 -VTVLVSQFN--------GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLD-  149 (173)
Q Consensus        81 -~~~~~~~~~--------~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~-  149 (173)
                       ...+.....        .........++++|+|.++++-                 ..++.|..+|..+ ++...... 
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~dg~i~i~d~~~~~~~~~~~~~  216 (369)
T 3zwl_B          154 ATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAG-----------------HKDGKISKYDVSNNYEYVDSIDL  216 (369)
T ss_dssp             TTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEE-----------------ETTSEEEEEETTTTTEEEEEEEC
T ss_pred             cceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEE-----------------cCCCEEEEEECCCCcEeEEEEec
Confidence             111111100        0001256788999999765552                 1347899999886 44433333 


Q ss_pred             cccCcceEEEccCCCEEEEEe
Q 030700          150 GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .......++|+|+++.|+++.
T Consensus       217 ~~~~v~~~~~~~~~~~l~~~~  237 (369)
T 3zwl_B          217 HEKSISDMQFSPDLTYFITSS  237 (369)
T ss_dssp             CSSCEEEEEECTTSSEEEEEE
T ss_pred             CCCceeEEEECCCCCEEEEec
Confidence            345567899999999887764

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=98.64  E-value=1.4e-05  Score=58.92  Aligned_cols=138  Identities=17%  Similarity=0.150  Sum_probs=89.1

Q ss_pred             CCcceEEEcCCCCEEEE-cCCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTA-TGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~-~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      ....++++.|++.++++ ..++.|..|+. +++.. .+........ .+++++++++++.+.....+..++. ++  ...
T Consensus        66 ~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~  144 (312)
T 4ery_A           66 LGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF-CCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKT  144 (312)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECSSSSEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             CceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEE
Confidence            45678999999876654 48889999985 45443 3333344566 8999999998555544444555554 44  232


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-cc-ccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DG-LYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~-~~~p~gi~~~~  161 (173)
                      +. ...    .....++++|+|.++++..                 .++.|..+|..+++..... .. ......++|+|
T Consensus       145 ~~-~~~----~~v~~~~~~~~~~~l~~~~-----------------~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~  202 (312)
T 4ery_A          145 LP-AHS----DPVSAVHFNRDGSLIVSSS-----------------YDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSP  202 (312)
T ss_dssp             EC-CCS----SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCSSCCCEEEEEECT
T ss_pred             ec-CCC----CcEEEEEEcCCCCEEEEEe-----------------CCCcEEEEECCCCceeeEEeccCCCceEEEEECC
Confidence            21 111    2457799999998766532                 3478888998876543322 22 23346799999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      ++++|+++.
T Consensus       203 ~~~~l~~~~  211 (312)
T 4ery_A          203 NGKYILAAT  211 (312)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEc
Confidence            999887754

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.63  E-value=2.2e-06  Score=66.58  Aligned_cols=138  Identities=12%  Similarity=0.040  Sum_probs=85.2

Q ss_pred             CcceEEEcC-CCCEE-EEcCCCeEEEEcCC-CcEE---EeccccCccccceEEcc-CCcEEEEEeCCCeEEE-EccCC--
Q 030700           11 HPEDVSVDG-NGVLY-TATGDGWIKRMHPN-GTWE---DWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLK-VSEEG--   80 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~-~~~~~~~i~~~~~~-g~~~---~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~-~~~~g--   80 (173)
                      ...+|+|+| ++.++ ++..+|.|..||.+ +...   ......+... +|+|+| ++++|+.+ ..++.++ .+..+  
T Consensus       121 ~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~-~l~f~p~~~~~l~s~-s~D~~v~iwd~~~~~  198 (435)
T 4e54_B          121 RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSIT-GLKFNPLNTNQFYAS-SMEGTTRLQDFKGNI  198 (435)
T ss_dssp             CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCC-EEEECSSCTTEEEEE-CSSSCEEEEETTSCE
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEE-EEEEeCCCCCEEEEE-eCCCEEEEeeccCCc
Confidence            357899999 56655 45588999999854 3322   2223344567 999997 67884444 4444444 44444  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      ...+... .. .......++++++|.++++-                 ..++.|..+|.++..+..+.......+.|+|+
T Consensus       199 ~~~~~~~-~~-~~~~~~~~~~~~~~~~l~~g-----------------~~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~  259 (435)
T 4e54_B          199 LRVFASS-DT-INIWFCSLDVSASSRMVVTG-----------------DNVGNVILLNMDGKELWNLRMHKKKVTHVALN  259 (435)
T ss_dssp             EEEEECC-SS-CSCCCCCEEEETTTTEEEEE-----------------CSSSBEEEEESSSCBCCCSBCCSSCEEEEEEC
T ss_pred             eeEEecc-CC-CCccEEEEEECCCCCEEEEE-----------------eCCCcEeeeccCcceeEEEecccceEEeeeec
Confidence            3433322 11 11345779999999877763                 23478888998755443333334456789999


Q ss_pred             cCCCEEEEE
Q 030700          161 EDERFLVVC  169 (173)
Q Consensus       161 ~dg~~lyv~  169 (173)
                      |+++.++++
T Consensus       260 p~~~~~~~s  268 (435)
T 4e54_B          260 PCCDWFLAT  268 (435)
T ss_dssp             TTCSSEEEE
T ss_pred             CCCceEEEE
Confidence            998755543

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=98.63  E-value=8.3e-06  Score=62.50  Aligned_cols=136  Identities=13%  Similarity=0.068  Sum_probs=86.8

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~   86 (173)
                      ..+++|.|+|.++++. .++.|..||.. ++... +........ .++|+++++.++.+.....+...+. ++ ......
T Consensus       126 v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEE-EEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            4689999999766544 88899999964 44433 333344567 9999999998555544444444453 45 222222


Q ss_pred             ccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--------cccCcceE
Q 030700           87 QFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--------GLYFANGV  157 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------~~~~p~gi  157 (173)
                      . .    .....++++| +|+++++..                 .++.|..+|..+++......        .......+
T Consensus       205 ~-~----~~v~~~~~~~~~~~~l~~~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v  262 (393)
T 1erj_A          205 I-E----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSV  262 (393)
T ss_dssp             C-S----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEE
T ss_pred             c-C----CCcEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEE
Confidence            1 1    2456788998 888766632                 34688888988765433321        12345789


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|+++.|+.+.
T Consensus       263 ~~~~~g~~l~s~s  275 (393)
T 1erj_A          263 VFTRDGQSVVSGS  275 (393)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EECCCCCEEEEEe
Confidence            9999999887653

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=98.63  E-value=6e-06  Score=62.05  Aligned_cols=137  Identities=12%  Similarity=0.109  Sum_probs=88.2

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEE
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~   85 (173)
                      ...++.+.+++.++.+..++.|..||. +++.. .+........ .+++++++++++.+.....+..++. .+  ...+.
T Consensus       145 ~v~~~~~~~~~~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~  223 (340)
T 1got_B          145 YLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVM-SLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT  223 (340)
T ss_dssp             CEEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTCSEEEEEC
T ss_pred             cEEEEEECCCCcEEEEECCCcEEEEECCCCcEEEEEcCCCCceE-EEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Confidence            345677777788777778899999985 45443 3333445567 9999999998444443334544553 45  33332


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---ccCcceEEEccC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALSED  162 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~p~gi~~~~d  162 (173)
                       ...    ...+.++++|+|+++++-.                 .++.|..+|..+++.......   ......++|+|+
T Consensus       224 -~h~----~~v~~v~~~p~~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~  281 (340)
T 1got_B          224 -GHE----SDINAICFFPNGNAFATGS-----------------DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKS  281 (340)
T ss_dssp             -CCS----SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTT
T ss_pred             -CCc----CCEEEEEEcCCCCEEEEEc-----------------CCCcEEEEECCCCcEEEEEccCCcccceEEEEECCC
Confidence             111    3568899999998777632                 347888899876654333322   123567999999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      +++|+.+.
T Consensus       282 g~~l~~g~  289 (340)
T 1got_B          282 GRLLLAGY  289 (340)
T ss_dssp             SSEEEEEE
T ss_pred             CCEEEEEC
Confidence            99877654

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.62  E-value=5.8e-06  Score=62.03  Aligned_cols=142  Identities=8%  Similarity=-0.078  Sum_probs=87.4

Q ss_pred             CCcceEEEcCCCCEEE-EcCCCeEEEEcC-CCcEEE---eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-c-
Q 030700           10 NHPEDVSVDGNGVLYT-ATGDGWIKRMHP-NGTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-V-   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~~~~~i~~~~~-~g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~-   81 (173)
                      ....++++.|++.+++ +..++.|..|+. +++...   ......... .+++++++++++++.....+..++. .+ . 
T Consensus        53 ~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~  131 (372)
T 1k8k_C           53 GQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDW  131 (372)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTE
T ss_pred             CcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCcee-EEEECCCCCEEEEEeCCCEEEEEEecCCCcc
Confidence            4567899999887654 447888998885 444322   223345567 9999999998566655444544442 22 2 


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC------------------CCe
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS------------------TNQ  143 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~------------------~~~  143 (173)
                      ......... .......++++|+|.++++..                 .++.|..+|..                  .++
T Consensus       132 ~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~  193 (372)
T 1k8k_C          132 WVCKHIKKP-IRSTVLSLDWHPNSVLLAAGS-----------------CDFKCRIFSAYIKEVEERPAPTPWGSKMPFGE  193 (372)
T ss_dssp             EEEEEECTT-CCSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEECCCTTTSCCCCCBTTBSCCCTTC
T ss_pred             eeeeeeecc-cCCCeeEEEEcCCCCEEEEEc-----------------CCCCEEEEEcccccccccccccccccccchhh
Confidence            222111111 124568899999998666532                 23677777732                  333


Q ss_pred             eEEee-ccccCcceEEEccCCCEEEEEe
Q 030700          144 TSLVL-DGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ~~~~~-~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..... ......+.++|+|+++.|+++.
T Consensus       194 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~  221 (372)
T 1k8k_C          194 LMFESSSSCGWVHGVCFSANGSRVAWVS  221 (372)
T ss_dssp             EEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred             heEecCCCCCeEEEEEECCCCCEEEEEe
Confidence            33333 2344567899999999887764

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.62  E-value=7e-06  Score=62.24  Aligned_cols=140  Identities=9%  Similarity=-0.001  Sum_probs=90.3

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEEEcCC-CcEEEec---cccCccccceEEcc-CCcEEEEEeCCCeEEEEccCC--
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHPN-GTWEDWH---QVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSEEG--   80 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~-g~~~~~~---~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~~g--   80 (173)
                      ....+++++|+| .++++. .++.|..|+.. ++.....   ....... +++|++ ++++++.+.....+..++..+  
T Consensus        74 ~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~  152 (383)
T 3ei3_B           74 RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAIT-GMKFNQFNTNQLFVSSIRGATTLRDFSGSV  152 (383)
T ss_dssp             SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEE-EEEEETTEEEEEEEEETTTEEEEEETTSCE
T ss_pred             CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCcee-EEEeCCCCCCEEEEEeCCCEEEEEECCCCc
Confidence            556789999988 666544 78899999864 4433322   2345567 999999 667745555444455555444  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      ...+... .+ .......++++|+|.++++-                 ..++.|..+|..+..+..+.........++|+
T Consensus       153 ~~~~~~~-~~-~~~~v~~~~~~~~~~~l~~~-----------------~~d~~i~i~d~~~~~~~~~~~h~~~v~~~~~~  213 (383)
T 3ei3_B          153 IQVFAKT-DS-WDYWYCCVDVSVSRQMLATG-----------------DSTGRLLLLGLDGHEIFKEKLHKAKVTHAEFN  213 (383)
T ss_dssp             EEEEECC-CC-SSCCEEEEEEETTTTEEEEE-----------------ETTSEEEEEETTSCEEEEEECSSSCEEEEEEC
T ss_pred             eEEEecc-CC-CCCCeEEEEECCCCCEEEEE-----------------CCCCCEEEEECCCCEEEEeccCCCcEEEEEEC
Confidence            3333321 11 11346789999999866653                 23478999998644454554445667899999


Q ss_pred             cCCC-EEEEE
Q 030700          161 EDER-FLVVC  169 (173)
Q Consensus       161 ~dg~-~lyv~  169 (173)
                      |+++ .++.+
T Consensus       214 ~~~~~~l~s~  223 (383)
T 3ei3_B          214 PRCDWLMATS  223 (383)
T ss_dssp             SSCTTEEEEE
T ss_pred             CCCCCEEEEE
Confidence            9998 56554

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.62  E-value=6.3e-06  Score=62.40  Aligned_cols=139  Identities=11%  Similarity=-0.004  Sum_probs=86.4

Q ss_pred             cceEEEcC--CCCEEE-EcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700           12 PEDVSVDG--NGVLYT-ATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus        12 p~~l~~~~--~g~l~~-~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      ..++++.+  +|.+++ +..++.|..||. +++... +........ +++++|++++++.+.....+..++. .+ ....
T Consensus       199 v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~-~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~  277 (354)
T 2pbi_B          199 VLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVN-SVRYYPSGDAFASGSDDATCRLYDLRADREVAI  277 (354)
T ss_dssp             EEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEE
T ss_pred             eEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            45677776  465554 458899999995 555443 333345567 9999999998454443333444443 33 2211


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~dg  163 (173)
                      ...  .........++++|+|.++++-.                 .++.|..+|..+++..... ........++|+||+
T Consensus       278 ~~~--~~~~~~~~~~~~s~~g~~l~~g~-----------------~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~spdg  338 (354)
T 2pbi_B          278 YSK--ESIIFGASSVDFSLSGRLLFAGY-----------------NDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDG  338 (354)
T ss_dssp             ECC--TTCCSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTS
T ss_pred             EcC--CCcccceeEEEEeCCCCEEEEEE-----------------CCCcEEEEECCCCceEEEEECCCCcEEEEEECCCC
Confidence            111  11112456799999998777632                 3478899998766543333 334556789999999


Q ss_pred             CEEEEEe
Q 030700          164 RFLVVCE  170 (173)
Q Consensus       164 ~~lyv~~  170 (173)
                      ++|..+.
T Consensus       339 ~~l~sgs  345 (354)
T 2pbi_B          339 TAFCSGS  345 (354)
T ss_dssp             SCEEEEE
T ss_pred             CEEEEEc
Confidence            9776653

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=98.62  E-value=8.1e-06  Score=62.50  Aligned_cols=139  Identities=12%  Similarity=0.017  Sum_probs=88.9

Q ss_pred             CCcceEEEcC-CCCEEEEc-CCCeEEEEcC-CCc--------EEEeccccCccccceEEccCC-cEEEEEeCCCeEEEEc
Q 030700           10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHP-NGT--------WEDWHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKVS   77 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~-~g~--------~~~~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~~   77 (173)
                      ....+++|+| ++.++++. .++.|..|+. ++.        ...+........ .+++++++ ++++.+.....+..++
T Consensus        82 ~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~l~s~~~dg~i~iwd  160 (402)
T 2aq5_A           82 APVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVG-IVAWHPTAQNVLLSAGCDNVILVWD  160 (402)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEE-EEEECSSBTTEEEEEETTSCEEEEE
T ss_pred             CCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEE-EEEECcCCCCEEEEEcCCCEEEEEE
Confidence            4467899999 88766555 7888999984 331        223333445667 99999998 5745554444455555


Q ss_pred             c-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccc--
Q 030700           78 E-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGL--  151 (173)
Q Consensus        78 ~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~--  151 (173)
                      . .+  ...+.....   ......++++|+|.++++..                 .++.|..+|+.+++..... ...  
T Consensus       161 ~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~  220 (402)
T 2aq5_A          161 VGTGAAVLTLGPDVH---PDTIYSVDWSRDGALICTSC-----------------RDKRVRVIEPRKGTVVAEKDRPHEG  220 (402)
T ss_dssp             TTTTEEEEEECTTTC---CSCEEEEEECTTSSCEEEEE-----------------TTSEEEEEETTTTEEEEEEECSSCS
T ss_pred             CCCCCccEEEecCCC---CCceEEEEECCCCCEEEEEe-----------------cCCcEEEEeCCCCceeeeeccCCCC
Confidence            3 44  222210111   13568899999997655521                 3478999999887655444 332  


Q ss_pred             cCcceEEEccCCCEEEEE
Q 030700          152 YFANGVALSEDERFLVVC  169 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~  169 (173)
                      ..+..++|+|+++.|+++
T Consensus       221 ~~~~~~~~~~~~~~l~~g  238 (402)
T 2aq5_A          221 TRPVHAVFVSEGKILTTG  238 (402)
T ss_dssp             SSCCEEEECSTTEEEEEE
T ss_pred             CcceEEEEcCCCcEEEEe
Confidence            236789999999877765

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=98.61  E-value=4.8e-06  Score=62.50  Aligned_cols=141  Identities=9%  Similarity=0.009  Sum_probs=87.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCc----EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~----~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      ....+++++|+|.++++. .++.|..|+.++.    ...+........ ++++++++++++.+.....+..++. .+ ..
T Consensus         9 ~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~   87 (372)
T 1k8k_C            9 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWK   87 (372)
T ss_dssp             SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEE
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCccc-EEEEeCCCCEEEEEcCCCeEEEEECCCCeee
Confidence            456889999999766544 7889999985443    223333445567 9999999998565554444555553 44 22


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe----eEEeecc-ccCcceE
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ----TSLVLDG-LYFANGV  157 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~----~~~~~~~-~~~p~gi  157 (173)
                      .......  ....+..++++|+|+++++-.                 .++.|..+|.+++.    ....... ......+
T Consensus        88 ~~~~~~~--~~~~v~~~~~~~~~~~l~~~~-----------------~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~  148 (372)
T 1k8k_C           88 PTLVILR--INRAARCVRWAPNEKKFAVGS-----------------GSRVISICYFEQENDWWVCKHIKKPIRSTVLSL  148 (372)
T ss_dssp             EEEECCC--CSSCEEEEEECTTSSEEEEEE-----------------TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEE
T ss_pred             eeEEeec--CCCceeEEEECCCCCEEEEEe-----------------CCCEEEEEEecCCCcceeeeeeecccCCCeeEE
Confidence            2221111  113568899999998666522                 23566666655443    2222222 3456789


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|+++.++++.
T Consensus       149 ~~~~~~~~l~~~~  161 (372)
T 1k8k_C          149 DWHPNSVLLAAGS  161 (372)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EEcCCCCEEEEEc
Confidence            9999998877654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.61  E-value=1.6e-06  Score=74.56  Aligned_cols=145  Identities=11%  Similarity=0.070  Sum_probs=92.5

Q ss_pred             cceEEEcCCC-CEEEEcCCCeEE-EEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030700           12 PEDVSVDGNG-VLYTATGDGWIK-RMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~~~~~i~-~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~   86 (173)
                      ..+++|. +| .|++...+..++ .++.++ ....+........ .+++++||+.++++.....++.++. +| ...+..
T Consensus       340 ~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~~~~~~~~-~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~  417 (1045)
T 1k32_A          340 YVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIER  417 (1045)
T ss_dssp             EEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEecCCcccee-eeEECCCCCEEEEECCCCeEEEEECCCCceEEecc
Confidence            4567777 77 355444466788 788654 4444443335667 8999999998666666667777775 55 444432


Q ss_pred             ccCCccccCCccEEEcCCCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCE
Q 030700           87 QFNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERF  165 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~  165 (173)
                      ...    .....++++|||+.++ +.....+.        ......+.|+.+|.+++++..+.........++|+|||++
T Consensus       418 ~~~----~~v~~~~~SpDG~~la~~~~~~~~~--------~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~  485 (1045)
T 1k32_A          418 SRE----AMITDFTISDNSRFIAYGFPLKHGE--------TDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKN  485 (1045)
T ss_dssp             CSS----SCCCCEEECTTSCEEEEEEEECSST--------TCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCE
T ss_pred             CCC----CCccceEECCCCCeEEEEecCcccc--------ccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCE
Confidence            221    2457899999998444 32110000        0001235899999988886666555566678999999999


Q ss_pred             EEEEe
Q 030700          166 LVVCE  170 (173)
Q Consensus       166 lyv~~  170 (173)
                      ||++.
T Consensus       486 l~~~s  490 (1045)
T 1k32_A          486 LYYLS  490 (1045)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            88764

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=98.61  E-value=9.5e-07  Score=62.85  Aligned_cols=102  Identities=20%  Similarity=0.152  Sum_probs=68.6

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccc------cC--ccccceEEccCCcEEEEEeCCCe
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV------GS--QSLLGLTTTKENNVIIVCDSQQG   72 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~------~~--~p~~gl~~~~~g~l~~v~~~~~~   72 (173)
                      .+++++.......++++|+|.||+. ..+.+++.++ ++.-..|...      .+  .=. .+.||++|.+ |+... ..
T Consensus        33 ~~iG~~gw~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~-a~~fD~~G~L-Yav~d-G~  108 (236)
T 1tl2_A           33 TLIGKGGWSNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQ-FLFFDPNGYL-YAVSK-DK  108 (236)
T ss_dssp             EEEESSSCTTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCS-EEEECTTSCE-EEEET-TE
T ss_pred             cccCccccccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccce-EEEECCCCCE-EEeCC-CE
Confidence            4566755778889999999999977 7789999986 4222222111      11  124 7889999999 88843 57


Q ss_pred             EEEEcc--CC-c------EEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           73 LLKVSE--EG-V------TVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        73 i~~~~~--~g-~------~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      |+++++  ++ .      ..+.+.  +  -...+.|.++|+|.||...
T Consensus       109 iyr~~pP~~~~~~Wl~~a~~vg~~--g--w~~~~~lff~p~G~Lyav~  152 (236)
T 1tl2_A          109 LYKASPPQSDTDNWIARATEVGSG--G--WSGFKFLFFHPNGYLYAVH  152 (236)
T ss_dssp             EEEESCCCSTTCCHHHHSEEEECS--S--GGGEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCcCCCCceeccccEeccC--C--CCceEEEEECCCceEEEEe
Confidence            889884  33 1      222211  1  1234789999999999986

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=98.61  E-value=9.3e-07  Score=72.89  Aligned_cols=154  Identities=11%  Similarity=0.027  Sum_probs=90.4

Q ss_pred             cceEEEcCCCCE-EEEcCCCeEEEEcCC-C---cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEE
Q 030700           12 PEDVSVDGNGVL-YTATGDGWIKRMHPN-G---TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVL   84 (173)
Q Consensus        12 p~~l~~~~~g~l-~~~~~~~~i~~~~~~-g---~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~   84 (173)
                      ..+++|+|+|+. +++.. +.|+.++.+ +   ....+........ .++|+|||+.++++. ...|+.++.+ + ...+
T Consensus       111 v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~-~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          111 IVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFAT-DAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             SCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEE-EEEECTTSSEEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             cceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccc-cccCCCCCCEEEEEe-CCcEEEEecCCCCEEEe
Confidence            578999999964 44444 889999964 4   4444444445677 899999999755554 3468877754 4 3333


Q ss_pred             EeccCCc------------cccCCccEEEcCCCc-EEEEeCcCCcCcccc-----------e--eeec---ccCCCceEE
Q 030700           85 VSQFNGS------------QLRFANDVIEASDGS-LYFTVSSTKFTPAEY-----------Y--LDLV---SGEPHGVLL  135 (173)
Q Consensus        85 ~~~~~~~------------~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~-----------~--~~~~---~~~~~~~v~  135 (173)
                      .......            .+..+..++++|||+ |+++..... ....+           .  ..+.   .......|+
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~-~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~  266 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDES-PVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG  266 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECT-TSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCC-CCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence            2211100            011257899999997 555532100 00000           0  0000   001123889


Q ss_pred             EEcCCC-CeeEEeecc---ccCcceEEEccCCCEEEEEe
Q 030700          136 KYDPST-NQTSLVLDG---LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       136 ~~d~~~-~~~~~~~~~---~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .+|.++ ++...+...   ......++| |||++|+++.
T Consensus       267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~  304 (741)
T 2ecf_A          267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQR  304 (741)
T ss_dssp             EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEE
T ss_pred             EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEE
Confidence            999988 776655422   344568999 9999988764

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.60  E-value=1.8e-06  Score=70.28  Aligned_cols=142  Identities=14%  Similarity=0.093  Sum_probs=87.9

Q ss_pred             CcceEEEcCCCC-EEEEcCC----------CeEEEEcCCC-------cEEEec-cccCccccceEEccCCcEEEEEeCC-
Q 030700           11 HPEDVSVDGNGV-LYTATGD----------GWIKRMHPNG-------TWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-   70 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~~~----------~~i~~~~~~g-------~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~-   70 (173)
                      ...+++|+|+|+ |+++..+          ..|+.++.++       ....+. ....... .+++++||+.|+++... 
T Consensus       131 ~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~SpDG~~la~~~~~~  209 (662)
T 3azo_A          131 RWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVT-GPRLSPDGRQAVWLAWDH  209 (662)
T ss_dssp             EEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEEC-CCEECTTSSEEEEEEECT
T ss_pred             cccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCccc-CceECCCCCEEEEEECCC
Confidence            356789999985 5555432          4789998755       445554 3345566 88999999876655422 


Q ss_pred             -------CeEEEEcc--CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030700           71 -------QGLLKVSE--EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS  140 (173)
Q Consensus        71 -------~~i~~~~~--~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  140 (173)
                             ..|+.++.  +| .........+. ...+..++++|||++|++....               ....|+++|++
T Consensus       210 ~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~-~~~~~~~~~spdg~l~~~~~~~---------------~~~~l~~~~~~  273 (662)
T 3azo_A          210 PRMPWEGTELKTARVTEDGRFADTRTLLGGP-EEAIAQAEWAPDGSLIVATDRT---------------GWWNLHRVDPA  273 (662)
T ss_dssp             TCCTTTCEEEEEEEECTTSCEEEEEEEEEET-TBCEEEEEECTTSCEEEEECTT---------------SSCEEEEECTT
T ss_pred             CCCCCCCcEEEEEEECCCCcccccEEeCCCC-CceEcceEECCCCeEEEEECCC---------------CCeEEEEEECC
Confidence                   24776664  34 22222211110 1356778999999987764321               12389999987


Q ss_pred             CCeeEEeeccc-cC--------cceEEEccCCCEEEEE
Q 030700          141 TNQTSLVLDGL-YF--------ANGVALSEDERFLVVC  169 (173)
Q Consensus       141 ~~~~~~~~~~~-~~--------p~gi~~~~dg~~lyv~  169 (173)
                      +++.+.+.... ..        ...++|+|+++.+|.+
T Consensus       274 ~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~  311 (662)
T 3azo_A          274 TGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVH  311 (662)
T ss_dssp             TCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEE
T ss_pred             CCceeecccccccccCccccccCceEeEeCCCEEEEEE
Confidence            77766554421 11        3568899998866654

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.60  E-value=1.1e-05  Score=61.24  Aligned_cols=135  Identities=10%  Similarity=0.081  Sum_probs=85.2

Q ss_pred             CCcceEEEcCCCCEEEE-cCCCeEEEEcCC-CcEEE-ecc---c---cCccccceEEccCCcEEEEEeCC---CeEEEEc
Q 030700           10 NHPEDVSVDGNGVLYTA-TGDGWIKRMHPN-GTWED-WHQ---V---GSQSLLGLTTTKENNVIIVCDSQ---QGLLKVS   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~-~~~~~i~~~~~~-g~~~~-~~~---~---~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~   77 (173)
                      ....++++.|++ ++++ ..++.|..|+.. ++... +..   .   ..... .+++++++++++++...   ..+..++
T Consensus       187 ~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~-~i~~~~~~~~l~~~~~d~~~g~i~i~d  264 (397)
T 1sq9_A          187 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYE  264 (397)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEE
T ss_pred             CCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccc-eEEECCCCCEEEEEecCCCCceEEEEE
Confidence            457889999988 5544 478899999854 54433 322   2   45567 99999999985554433   3455555


Q ss_pred             c-CC--cEEEEeccC-C-------ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           78 E-EG--VTVLVSQFN-G-------SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        78 ~-~g--~~~~~~~~~-~-------~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      . ++  ...+..... .       ........++++|+|.++++..                 .++.|..||..+++...
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~  327 (397)
T 1sq9_A          265 TEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-----------------WDGKLRFWDVKTKERIT  327 (397)
T ss_dssp             TTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEE
T ss_pred             CCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEe-----------------CCCeEEEEEcCCCceeE
Confidence            3 44  333321000 0       0113567899999998766632                 34789999988776544


Q ss_pred             eec------c----------------ccCcceEEEccCC
Q 030700          147 VLD------G----------------LYFANGVALSEDE  163 (173)
Q Consensus       147 ~~~------~----------------~~~p~gi~~~~dg  163 (173)
                      ...      .                ....+.++|+|++
T Consensus       328 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g  366 (397)
T 1sq9_A          328 TLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKG  366 (397)
T ss_dssp             EEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTT
T ss_pred             EEecccCcccchhhhhccccccccccCCceeEEEecccc
Confidence            443      2                3456789999998

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.59  E-value=2.1e-05  Score=59.99  Aligned_cols=140  Identities=15%  Similarity=0.153  Sum_probs=88.6

Q ss_pred             CcceEEEcC-CCCEEEEc-CCCeEEEEcCC--Cc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC--c
Q 030700           11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHPN--GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG--V   81 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~--g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g--~   81 (173)
                      ...++++.+ ++.++++. .++.|..||..  ++ ...+........ .++|+|++++ +++...++.+++ +. .+  .
T Consensus       207 ~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~-l~s~s~D~~i~lwd~~~~~~~  284 (380)
T 3iz6_a          207 DVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDIN-SVKFFPDGQR-FGTGSDDGTCRLFDMRTGHQL  284 (380)
T ss_dssp             CEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCC-EEEECTTSSE-EEEECSSSCEEEEETTTTEEE
T ss_pred             CeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeE-EEEEecCCCe-EEEEcCCCeEEEEECCCCcEE
Confidence            345677877 77777655 88899999853  23 333434455667 9999999998 555555554444 43 55  2


Q ss_pred             EEEEeccC--CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-----cccCc
Q 030700           82 TVLVSQFN--GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----GLYFA  154 (173)
Q Consensus        82 ~~~~~~~~--~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~~~~p  154 (173)
                      ..+.....  .........++++|+|+++++-.                 .++.|..+|..+++......     .....
T Consensus       285 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~-----------------~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v  347 (380)
T 3iz6_a          285 QVYNREPDRNDNELPIVTSVAFSISGRLLFAGY-----------------SNGDCYVWDTLLAEMVLNLGTLQNSHEGRI  347 (380)
T ss_dssp             EEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC-----------------TTSCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred             EEecccccccccccCceEEEEECCCCCEEEEEE-----------------CCCCEEEEECCCCceEEEEecccCCCCCce
Confidence            32221111  11122467899999998777632                 35789999987665433331     23456


Q ss_pred             ceEEEccCCCEEEEE
Q 030700          155 NGVALSEDERFLVVC  169 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~  169 (173)
                      +.++|+|||++|+.+
T Consensus       348 ~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          348 SCLGLSSDGSALCTG  362 (380)
T ss_dssp             CEEEECSSSSEEEEE
T ss_pred             EEEEECCCCCEEEEe
Confidence            789999999977654

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=98.59  E-value=4.9e-06  Score=63.10  Aligned_cols=138  Identities=12%  Similarity=0.019  Sum_probs=90.6

Q ss_pred             CCcceEEEcC-CCCEE-EEcCCCeEEEEcCCCcEE-Eecccc---CccccceEEccCCcEEEEEeCCCeEEEEccCC--c
Q 030700           10 NHPEDVSVDG-NGVLY-TATGDGWIKRMHPNGTWE-DWHQVG---SQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--V   81 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~-~~~~~~~i~~~~~~g~~~-~~~~~~---~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~   81 (173)
                      ....+++|.| ++.++ .+..++.|..|+..+... .+....   .... .+++++++++++.+.....+..++.++  .
T Consensus       119 ~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~  197 (383)
T 3ei3_B          119 DAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVIQVFAKTDSWDYWYC-CVDVSVSRQMLATGDSTGRLLLLGLDGHEI  197 (383)
T ss_dssp             CBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEEEEEECCCCSSCCEE-EEEEETTTTEEEEEETTSEEEEEETTSCEE
T ss_pred             CceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCceEEEeccCCCCCCeE-EEEECCCCCEEEEECCCCCEEEEECCCCEE
Confidence            4567899999 66555 455889999999766533 222222   3466 899999999956555555555556555  3


Q ss_pred             EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC----CeeEEeeccccCcce
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST----NQTSLVLDGLYFANG  156 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~----~~~~~~~~~~~~p~g  156 (173)
                      ..+.. ..    .....++++|+|. ++++..                 .++.|..+|..+    +..............
T Consensus       198 ~~~~~-h~----~~v~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  255 (383)
T 3ei3_B          198 FKEKL-HK----AKVTHAEFNPRCDWLMATSS-----------------VDATVKLWDLRNIKDKNSYIAEMPHEKPVNA  255 (383)
T ss_dssp             EEEEC-SS----SCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEEGGGCCSTTCEEEEEECSSCEEE
T ss_pred             EEecc-CC----CcEEEEEECCCCCCEEEEEe-----------------CCCEEEEEeCCCCCcccceEEEecCCCceEE
Confidence            33321 11    3568899999997 666632                 346888888765    334333334556688


Q ss_pred             EEEcc-CCCEEEEEe
Q 030700          157 VALSE-DERFLVVCE  170 (173)
Q Consensus       157 i~~~~-dg~~lyv~~  170 (173)
                      ++|+| +++.|+++.
T Consensus       256 ~~~s~~~~~~l~~~~  270 (383)
T 3ei3_B          256 AYFNPTDSTKLLTTD  270 (383)
T ss_dssp             EEECTTTSCEEEEEE
T ss_pred             EEEcCCCCCEEEEEc
Confidence            99999 999887764

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.58  E-value=1.6e-05  Score=59.21  Aligned_cols=139  Identities=12%  Similarity=0.095  Sum_probs=88.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEE-EeccccCccccceEEccC------CcEEEEEeCCCeEEEEcc-CC
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWE-DWHQVGSQSLLGLTTTKE------NNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~-~~~~~~~~p~~gl~~~~~------g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ....+++++|++.++++. .++.|..|+..+... .+........ .+++.+.      +.+++.+.....+...+. .+
T Consensus       108 ~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~  186 (319)
T 3frx_A          108 SDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVS-QVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQF  186 (319)
T ss_dssp             SCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEE-EEEECCC------CCEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEE-EEEEccCCCCCCCccEEEEEeCCCEEEEEECCcc
Confidence            446788999988766554 888999999776543 3333344455 7777764      445344443333444443 33


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                       ........    ....+.++++|+|.++++-                 ..++.|..+|..+++.............++|
T Consensus       187 ~~~~~~~~h----~~~v~~~~~sp~g~~l~s~-----------------~~dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  245 (319)
T 3frx_A          187 QIEADFIGH----NSNINTLTASPDGTLIASA-----------------GKDGEIMLWNLAAKKAMYTLSAQDEVFSLAF  245 (319)
T ss_dssp             EEEEEECCC----CSCEEEEEECTTSSEEEEE-----------------ETTCEEEEEETTTTEEEEEEECCSCEEEEEE
T ss_pred             hhheeecCC----CCcEEEEEEcCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEecCCCcEEEEEE
Confidence             22111111    1356789999999877763                 2357899999987765544444455678999


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +|++..|..+.
T Consensus       246 sp~~~~la~~~  256 (319)
T 3frx_A          246 SPNRYWLAAAT  256 (319)
T ss_dssp             CSSSSEEEEEE
T ss_pred             cCCCCEEEEEc
Confidence            99999877653

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.56  E-value=2.4e-06  Score=66.61  Aligned_cols=137  Identities=16%  Similarity=0.239  Sum_probs=84.2

Q ss_pred             ceEEEcCCCCEEEEcCCCeEEEEc-CCCc---EE-Eeccc----------------------------------------
Q 030700           13 EDVSVDGNGVLYTATGDGWIKRMH-PNGT---WE-DWHQV----------------------------------------   47 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~~~~~i~~~~-~~g~---~~-~~~~~----------------------------------------   47 (173)
                      .+++++++|.++++..++.|+.|+ .+|+   .. .+...                                        
T Consensus         8 ~~v~~s~dg~~l~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (450)
T 2vdu_B            8 QNLLTSRDGSLVFAIIKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDSIKRT   87 (450)
T ss_dssp             CEEEECSSSSEEEEEETTEEEEEEEETTTEEEEEEEEECCC---------------------------------------
T ss_pred             EEEEecCCCCEEEEEeCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcccccc
Confidence            578999999877776677899988 4665   21 22110                                        


Q ss_pred             --------------cCccccceEEccCCcEEEEEeCCCe-EEEEc-c--CC--cEEEEeccCCccccCCccEEEcCCCcE
Q 030700           48 --------------GSQSLLGLTTTKENNVIIVCDSQQG-LLKVS-E--EG--VTVLVSQFNGSQLRFANDVIEASDGSL  107 (173)
Q Consensus        48 --------------~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~-~--~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~  107 (173)
                                    ..... +++|++++++|+++...++ +..++ .  .+  ...+......   ..+..++++|+|..
T Consensus        88 ~~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~  163 (450)
T 2vdu_B           88 AAKVPSPGLGAPPIYSYIR-NLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFS---KRPNAISIAEDDTT  163 (450)
T ss_dssp             ------------CCCCCEE-EEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECS---SCEEEEEECTTSSE
T ss_pred             CccccCCCCCCCccCCceE-EEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCC---CCceEEEEcCCCCE
Confidence                          01356 8999999998545554433 44344 2  34  3333221111   35688999999975


Q ss_pred             EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE-----EeeccccCcceEEEccC---CCEEEEEe
Q 030700          108 YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-----LVLDGLYFANGVALSED---ERFLVVCE  170 (173)
Q Consensus       108 ~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-----~~~~~~~~p~gi~~~~d---g~~lyv~~  170 (173)
                      +++-.                 .++.++.++..+++..     .+.......+.++|+|+   +++|+.+.
T Consensus       164 l~~~~-----------------~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~  217 (450)
T 2vdu_B          164 VIIAD-----------------KFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSD  217 (450)
T ss_dssp             EEEEE-----------------TTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEE
T ss_pred             EEEEe-----------------CCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEc
Confidence            55421                 2478888887655432     12222455678999999   87776654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=98.55  E-value=2.3e-06  Score=64.88  Aligned_cols=152  Identities=13%  Similarity=0.189  Sum_probs=89.1

Q ss_pred             EEEcCCCC-EEEEcC-CC--eEEEEcCCC-cEEEeccccC-ccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030700           15 VSVDGNGV-LYTATG-DG--WIKRMHPNG-TWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVS   86 (173)
Q Consensus        15 l~~~~~g~-l~~~~~-~~--~i~~~~~~g-~~~~~~~~~~-~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~   86 (173)
                      ++|.|+|+ |++... ++  .|+.++.++ +...+..... ... ++++++||+.|+++.....++.++. .+ ...+..
T Consensus        41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~-~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~  119 (388)
T 3pe7_A           41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTF-GGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQ  119 (388)
T ss_dssp             CCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSS-SCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE
T ss_pred             ccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCcc-ceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeee
Confidence            67899885 555443 44  599998654 4444433322 234 6789999988677766667888885 44 444433


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCC--cCc-ccc--eeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTK--FTP-AEY--YLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~--~~~-~~~--~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      ...+.  .......++++|+++++.....  ... ..+  ............|+++|.++++.+.+.........++|+|
T Consensus       120 ~~~~~--~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp  197 (388)
T 3pe7_A          120 VPAEW--VGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQWLGHPIYRP  197 (388)
T ss_dssp             CCTTE--EEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSCEEEEEEET
T ss_pred             chhhc--ccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCccccccEECC
Confidence            22110  1112234588998766421000  000 000  0001122345789999999888877776655667899999


Q ss_pred             -CCCEEEEE
Q 030700          162 -DERFLVVC  169 (173)
Q Consensus       162 -dg~~lyv~  169 (173)
                       ||+.|+++
T Consensus       198 ~dg~~l~~~  206 (388)
T 3pe7_A          198 YDDSTVAFC  206 (388)
T ss_dssp             TEEEEEEEE
T ss_pred             CCCCEEEEE
Confidence             99877554

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.54  E-value=2.9e-06  Score=64.23  Aligned_cols=136  Identities=13%  Similarity=0.094  Sum_probs=82.6

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEE-eccccCccccceEEccCCc-EEEEEeCCCe-EEEEcc-CC--cE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENN-VIIVCDSQQG-LLKVSE-EG--VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~-i~~~~~-~g--~~   82 (173)
                      ...+++|.|+|.++++. .++.|..||. +++... +........ .++|++++. + +++...++ +...|. .+  ..
T Consensus       129 ~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~-l~s~s~D~~v~iwd~~~~~~~~  206 (344)
T 4gqb_B          129 IVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT-CVAASPHKDSV-FLSCSEDNRILLWDTRCPKPAS  206 (344)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECSSCTTE-EEEEETTSCEEEEETTSSSCEE
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE-EEEecCCCCCc-eeeeccccccccccccccceee
Confidence            45789999999766554 8889999995 455433 333445567 899999874 5 54444444 444453 44  33


Q ss_pred             EEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALS  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~  160 (173)
                      .+.....+   ..+..++++|++ +++++-                 ..++.|..+|..+++...... .....+.++|+
T Consensus       207 ~~~~~~~~---~~~~~~~~~p~~~~~l~sg-----------------~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fs  266 (344)
T 4gqb_B          207 QIGCSAPG---YLPTSLAWHPQQSEVFVFG-----------------DENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFS  266 (344)
T ss_dssp             ECC----C---CCEEEEEECSSCTTEEEEE-----------------ETTSEEEEEESCC--CCEEEECCSSCEEEEEEC
T ss_pred             eeecceee---ccceeeeecCCCCcceEEe-----------------ccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence            32211111   346778999854 566652                 234789999988776433333 34556889999


Q ss_pred             cCCCEEEE
Q 030700          161 EDERFLVV  168 (173)
Q Consensus       161 ~dg~~lyv  168 (173)
                      |+++.+++
T Consensus       267 p~g~~~la  274 (344)
T 4gqb_B          267 PHSVPFLA  274 (344)
T ss_dssp             SSSSCCEE
T ss_pred             cCCCeEEE
Confidence            99854433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.54  E-value=4e-06  Score=63.96  Aligned_cols=142  Identities=10%  Similarity=0.058  Sum_probs=86.5

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcCCC------cEEEeccccCccccceEEccC-CcEEEEEeCCCeEEEEccCC-
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPNG------TWEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQGLLKVSEEG-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~g------~~~~~~~~~~~p~~gl~~~~~-g~l~~v~~~~~~i~~~~~~g-   80 (173)
                      ....+++|.|++.++ ++..++.|..|+...      ....+........ .++++++ +++++.+.....+..++... 
T Consensus        68 ~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~s~~~dg~v~iwd~~~~  146 (416)
T 2pm9_A           68 SKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVK-TVKFNAKQDNVLASGGNNGEIFIWDMNKC  146 (416)
T ss_dssp             SCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCC-EEEECSSSTTBEEEECSSSCEEBCBTTTT
T ss_pred             CceEEEEECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceE-EEEEcCCCCCEEEEEcCCCeEEEEECCCC
Confidence            346789999988655 455788999998543      2333434455667 9999998 78744443333344444322 


Q ss_pred             c------EEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---
Q 030700           81 V------TVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---  150 (173)
Q Consensus        81 ~------~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---  150 (173)
                      .      ..+..............++++|+ +.++++..                 .++.|..+|..+++.......   
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~-----------------~dg~v~iwd~~~~~~~~~~~~~~~  209 (416)
T 2pm9_A          147 TESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASAG-----------------SSNFASIWDLKAKKEVIHLSYTSP  209 (416)
T ss_dssp             SSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEES-----------------SSSCEEEEETTTTEEEEEECCCCC
T ss_pred             ccccccccccccccccCCCCCeeEEEeCCCCCcEEEEEc-----------------CCCCEEEEECCCCCcceEEecccc
Confidence            2      21111000111235788999998 56776632                 347899999887765544433   


Q ss_pred             ----ccCcceEEEccCCC-EEEEE
Q 030700          151 ----LYFANGVALSEDER-FLVVC  169 (173)
Q Consensus       151 ----~~~p~gi~~~~dg~-~lyv~  169 (173)
                          ....+.++|+|+++ .++++
T Consensus       210 ~~~~~~~v~~~~~~~~~~~~l~~~  233 (416)
T 2pm9_A          210 NSGIKQQLSVVEWHPKNSTRVATA  233 (416)
T ss_dssp             SSCCCCCEEEEEECSSCTTEEEEE
T ss_pred             ccccCCceEEEEECCCCCCEEEEE
Confidence                34567899999974 44443

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.54  E-value=1.1e-05  Score=61.40  Aligned_cols=141  Identities=13%  Similarity=0.115  Sum_probs=90.6

Q ss_pred             CcceEEEcCCCCEE-EEcCCCeEEEEcCCCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030700           11 HPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVS   86 (173)
Q Consensus        11 ~p~~l~~~~~g~l~-~~~~~~~i~~~~~~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~   86 (173)
                      ...+++|.|+|.++ ++..++.|..|+.+++... +........ .+++++++++++++.....+..++. ++ ......
T Consensus       110 ~v~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~  188 (425)
T 1r5m_A          110 QVTCLAWSHDGNSIVTGVENGELRLWNKTGALLNVLNFHRAPIV-SVKWNKDGTHIISMDVENVTILWNVISGTVMQHFE  188 (425)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEECCCCSCEE-EEEECTTSSEEEEEETTCCEEEEETTTTEEEEEEC
T ss_pred             ceEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeeccCCCccEE-EEEECCCCCEEEEEecCCeEEEEECCCCcEEEEee
Confidence            57789999998755 4558889999997776544 333445567 9999999998666655555665564 44 222111


Q ss_pred             ccCCcc-----------ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCc
Q 030700           87 QFNGSQ-----------LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFA  154 (173)
Q Consensus        87 ~~~~~~-----------~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p  154 (173)
                      ......           ......+.+.+++.++++.                  .++.|..+|..+++...... .....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------~~g~i~~~d~~~~~~~~~~~~~~~~i  250 (425)
T 1r5m_A          189 LKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPG------------------PKGAIFVYQITEKTPTGKLIGHHGPI  250 (425)
T ss_dssp             CC---------------CCCBSCCEEEETTEEEEEC------------------GGGCEEEEETTCSSCSEEECCCSSCE
T ss_pred             ccccCccceeeccccCCcceeeEEEEcCCCEEEEEc------------------CCCeEEEEEcCCCceeeeeccCCCce
Confidence            111100           0116778888887766553                  34789999988765433333 23455


Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      ..++|+|+++.|+++.
T Consensus       251 ~~~~~~~~~~~l~~~~  266 (425)
T 1r5m_A          251 SVLEFNDTNKLLLSAS  266 (425)
T ss_dssp             EEEEEETTTTEEEEEE
T ss_pred             EEEEECCCCCEEEEEc
Confidence            7899999999877764

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.53  E-value=2.5e-06  Score=69.23  Aligned_cols=139  Identities=9%  Similarity=0.062  Sum_probs=84.8

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEE--eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWED--WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLV   85 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~--~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~   85 (173)
                      .+.++++.|+|.++++. .++.|..|+.++ ....  ......... .++|+|+|++|+.+.....+...+. ++.+...
T Consensus       450 ~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~~~~~~h~~~v~-~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~  528 (611)
T 1nr0_A          450 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEIT-SVAFSNNGAFLVATDQSRKVIPYSVANNFELAH  528 (611)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEEGGGTTEESC
T ss_pred             CceEEEEeCCCCEEEEeCCCCeEEEEEccCCceeeeeccCCCCceE-EEEECCCCCEEEEEcCCCCEEEEEcCCCCceee
Confidence            35678999999766554 788888888644 3321  123344567 9999999999555554444555553 3122111


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eE-Eeec-c-ccCcceEEEcc
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TS-LVLD-G-LYFANGVALSE  161 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~-~~~~-~-~~~p~gi~~~~  161 (173)
                      ....+........++++|||+++++-.                 .++.|..++.+++. .. .... . ....+.++|+|
T Consensus       529 ~~~~~~H~~~V~~v~fspdg~~lasgs-----------------~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~  591 (611)
T 1nr0_A          529 TNSWTFHTAKVACVSWSPDNVRLATGS-----------------LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLN  591 (611)
T ss_dssp             CCCCCCCSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEE
T ss_pred             eeeeeecccceeEEEECCCCCEEEEEE-----------------CCCcEEEEECCCcccccchhhccCcccCeeEEEEcC
Confidence            101110113568899999999877632                 34678888876543 21 2222 2 35567899999


Q ss_pred             CCCEEEE
Q 030700          162 DERFLVV  168 (173)
Q Consensus       162 dg~~lyv  168 (173)
                      |++ |+.
T Consensus       592 d~~-l~s  597 (611)
T 1nr0_A          592 ETT-IVS  597 (611)
T ss_dssp             TTE-EEE
T ss_pred             CCE-EEE
Confidence            997 544

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.53  E-value=9.9e-06  Score=62.53  Aligned_cols=140  Identities=11%  Similarity=0.130  Sum_probs=89.4

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEec
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQ   87 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~   87 (173)
                      ...+++++|++.++++. .++.|..||. +++.. .+........ .++|++++++|+.+.....+..++..+.+.+. .
T Consensus       110 ~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~-~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~-~  187 (410)
T 1vyh_C          110 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIR-T  187 (410)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEE-C
T ss_pred             cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEE-EEEEcCCCCEEEEEeCCCeEEEEeCCCCceeE-E
Confidence            45689999988776655 8899999985 45433 3333445567 99999999984544444334444443311111 1


Q ss_pred             cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEccCCCEE
Q 030700           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALSEDERFL  166 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~~dg~~l  166 (173)
                      +.+. ......++++|+|..+++-                 ..++.|..+|..++...... ......+.++++|+++.+
T Consensus       188 ~~~h-~~~V~~v~~~p~~~~l~s~-----------------s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l  249 (410)
T 1vyh_C          188 MHGH-DHNVSSVSIMPNGDHIVSA-----------------SRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLI  249 (410)
T ss_dssp             CCCC-SSCEEEEEECSSSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             EcCC-CCCEEEEEEeCCCCEEEEE-----------------eCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEE
Confidence            1111 1356789999999877663                 23578999998877654333 334456788999999877


Q ss_pred             EEEe
Q 030700          167 VVCE  170 (173)
Q Consensus       167 yv~~  170 (173)
                      +.+.
T Consensus       250 ~s~s  253 (410)
T 1vyh_C          250 ASCS  253 (410)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            6653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.53  E-value=1.2e-06  Score=70.52  Aligned_cols=135  Identities=14%  Similarity=0.121  Sum_probs=81.1

Q ss_pred             CcceEEEcCCC--CEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC----CeEEEEcc-CC-c
Q 030700           11 HPEDVSVDGNG--VLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QGLLKVSE-EG-V   81 (173)
Q Consensus        11 ~p~~l~~~~~g--~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----~~i~~~~~-~g-~   81 (173)
                      +....++.|+|  .+|++...+.+..|+. +|+...+.....  . .++++|||+.++.+...    ..++.++. +| .
T Consensus       111 ~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~-~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~  187 (582)
T 3o4h_A          111 PMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--F-GFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGL  187 (582)
T ss_dssp             SBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--C-EEEEEEETTEEEEEEEEETTEEEEEEEETTTCCC
T ss_pred             CceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--c-eEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCc
Confidence            34456777766  3556555556667775 455444433333  6 88999999986644322    34777774 55 5


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEE--
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVA--  158 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~--  158 (173)
                      +.+... .    .....++++|||+.+++...               .....|+++|.++++.. ...+ ...+.+++  
T Consensus       188 ~~l~~~-~----~~~~~~~~SpDG~~l~~~~~---------------~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~  246 (582)
T 3o4h_A          188 RVFDSG-E----GSFSSASISPGMKVTAGLET---------------AREARLVTVDPRDGSVE-DLELPSKDFSSYRPT  246 (582)
T ss_dssp             EEECCS-S----CEEEEEEECTTSCEEEEEEC---------------SSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCS
T ss_pred             eEeecC-C----CccccceECCCCCEEEEccC---------------CCeeEEEEEcCCCCcEE-EccCCCcChhhhhhc
Confidence            554321 1    23478999999985553211               11238999999988877 4433 22334455  


Q ss_pred             ------EccCCCEEEEE
Q 030700          159 ------LSEDERFLVVC  169 (173)
Q Consensus       159 ------~~~dg~~lyv~  169 (173)
                            |+|||+.++.+
T Consensus       247 ~~~~~~~spdg~~~~~~  263 (582)
T 3o4h_A          247 AITWLGYLPDGRLAVVA  263 (582)
T ss_dssp             EEEEEEECTTSCEEEEE
T ss_pred             cccceeEcCCCcEEEEE
Confidence                  99999544433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.53  E-value=3.9e-05  Score=57.57  Aligned_cols=141  Identities=10%  Similarity=0.074  Sum_probs=85.0

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~   85 (173)
                      ....++++.|++.+.++. .++.|..||. +++.. .+........ .++|++++++++.+.....+...+..+ .....
T Consensus        77 ~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~  155 (343)
T 2xzm_R           77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVY-SVAFSPDNRQILSAGAEREIKLWNILGECKFSS  155 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEE-EEEECSSTTEEEEEETTSCEEEEESSSCEEEEC
T ss_pred             CceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEE-EEEECCCCCEEEEEcCCCEEEEEeccCCceeee
Confidence            345678999988766555 8899999985 45543 3434455667 999999999855554444454445444 22111


Q ss_pred             eccCCccccCCccEEEcCCC----------cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE-EeeccccCc
Q 030700           86 SQFNGSQLRFANDVIEASDG----------SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS-LVLDGLYFA  154 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG----------~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~~~p  154 (173)
                      ....+ .......++++|++          .++++                 ...++.|..+|.. .+.. .+.......
T Consensus       156 ~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~l~s-----------------~~~d~~i~iwd~~-~~~~~~~~~h~~~v  216 (343)
T 2xzm_R          156 AEKEN-HSDWVSCVRYSPIMKSANKVQPFAPYFAS-----------------VGWDGRLKVWNTN-FQIRYTFKAHESNV  216 (343)
T ss_dssp             CTTTS-CSSCEEEEEECCCCCSCSCCCSSCCEEEE-----------------EETTSEEEEEETT-TEEEEEEECCSSCE
T ss_pred             ecccC-CCceeeeeeeccccccccccCCCCCEEEE-----------------EcCCCEEEEEcCC-CceeEEEcCccccc
Confidence            11111 11245667787776          33333                 2245788888854 4333 233334556


Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      +.++|+|+|++|..+.
T Consensus       217 ~~~~~s~~g~~l~sgs  232 (343)
T 2xzm_R          217 NHLSISPNGKYIATGG  232 (343)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             eEEEECCCCCEEEEEc
Confidence            7899999999876653

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=98.52  E-value=5.7e-06  Score=62.67  Aligned_cols=136  Identities=12%  Similarity=0.063  Sum_probs=86.1

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcEE-Eec--cccCccccceEEccC-CcEEEEEeCCCe-EEEEcc-CC
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTWE-DWH--QVGSQSLLGLTTTKE-NNVIIVCDSQQG-LLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~~-~~~--~~~~~p~~gl~~~~~-g~l~~v~~~~~~-i~~~~~-~g   80 (173)
                      ....++++.+++ .++++. .++.|..||. .++.. .+.  ....... .++++++ +++ +++...++ |..+|. .+
T Consensus       170 ~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~-l~sg~~dg~v~~wd~~~~  247 (344)
T 4gqb_B          170 AQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPT-SLAWHPQQSEV-FVFGDENGTVSLVDTKST  247 (344)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEE-EEEECSSCTTE-EEEEETTSEEEEEESCC-
T ss_pred             CceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccce-eeeecCCCCcc-eEEeccCCcEEEEECCCC
Confidence            445688999976 566554 7889999985 44433 221  2233466 8899985 566 55544444 444453 44


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceE
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGV  157 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi  157 (173)
                        ...+... .    ...+.++++|+|. ++++-                 ..++.|..+|..++++......-...+.+
T Consensus       248 ~~~~~~~~h-~----~~v~~v~fsp~g~~~lasg-----------------s~D~~i~vwd~~~~~~~~~~~H~~~V~~v  305 (344)
T 4gqb_B          248 SCVLSSAVH-S----QCVTGLVFSPHSVPFLASL-----------------SEDCSLAVLDSSLSELFRSQAHRDFVRDA  305 (344)
T ss_dssp             -CCEEEECC-S----SCEEEEEECSSSSCCEEEE-----------------ETTSCEEEECTTCCEEEEECCCSSCEEEE
T ss_pred             cEEEEEcCC-C----CCEEEEEEccCCCeEEEEE-----------------eCCCeEEEEECCCCcEEEEcCCCCCEEEE
Confidence              4443321 1    3467899999984 55542                 23578999999888766554445667899


Q ss_pred             EEccCCCEEEEE
Q 030700          158 ALSEDERFLVVC  169 (173)
Q Consensus       158 ~~~~dg~~lyv~  169 (173)
                      +|+|+++.|+++
T Consensus       306 ~~sp~~~~llas  317 (344)
T 4gqb_B          306 TWSPLNHSLLTT  317 (344)
T ss_dssp             EECSSSTTEEEE
T ss_pred             EEeCCCCeEEEE
Confidence            999998866654

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=98.52  E-value=1.2e-05  Score=61.20  Aligned_cols=138  Identities=12%  Similarity=0.059  Sum_probs=86.7

Q ss_pred             CCcceEEEcCCCCEEE-EcCCCeEEEEcCC-CcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700           10 NHPEDVSVDGNGVLYT-ATGDGWIKRMHPN-GTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~~~~~i~~~~~~-g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      ....++++.|++.+++ +..++.|..|+.. ++. ..+........ .+++++++ +++.+.....+..++. .+ ....
T Consensus       248 ~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~-~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~  325 (425)
T 1r5m_A          248 GPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIV-SASWVGDD-KVISCSMDGSVRLWSLKQNTLLAL  325 (425)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEE-EEEEETTT-EEEEEETTSEEEEEETTTTEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEE-EEEECCCC-EEEEEeCCCcEEEEECCCCcEeEe
Confidence            4467899999886554 4478899999853 332 33333445567 99999998 5355554445555554 44 2222


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--------------------e
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--------------------T  144 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------------------~  144 (173)
                      .....    ..+..++++|+|.++++..                 .++.|..|+..+++                    .
T Consensus       326 ~~~~~----~~i~~~~~s~~~~~l~~~~-----------------~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (425)
T 1r5m_A          326 SIVDG----VPIFAGRISQDGQKYAVAF-----------------MDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPL  384 (425)
T ss_dssp             EECTT----CCEEEEEECTTSSEEEEEE-----------------TTSCEEEEECHHHHC--------------CEECCE
T ss_pred             cccCC----ccEEEEEEcCCCCEEEEEE-----------------CCCeEEEEECCCCccceeeeecccccccCcccchh
Confidence            22111    3567899999998766532                 23567777766544                    3


Q ss_pred             EEeeccc-c--CcceEEEccCCCEEEEEe
Q 030700          145 SLVLDGL-Y--FANGVALSEDERFLVVCE  170 (173)
Q Consensus       145 ~~~~~~~-~--~p~gi~~~~dg~~lyv~~  170 (173)
                      ....... .  ..+.++|+|++++|+++.
T Consensus       385 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~  413 (425)
T 1r5m_A          385 YASYQSSQDNDYIFDLSWNCAGNKISVAY  413 (425)
T ss_dssp             EEEECCTTCCCCEEEEEECTTSSEEEEEE
T ss_pred             hhhhcCcccCCceEEEEccCCCceEEEEe
Confidence            3333322 2  678999999999887764

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.52  E-value=1.9e-06  Score=65.48  Aligned_cols=136  Identities=14%  Similarity=0.053  Sum_probs=80.7

Q ss_pred             cceEEEcCCCCEEEEc-C------CCeEEEEcC-CCcEE-----EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030700           12 PEDVSVDGNGVLYTAT-G------DGWIKRMHP-NGTWE-----DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~------~~~i~~~~~-~g~~~-----~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      ..+++|.|+|.++++. .      ++.|+.|+. ++...     .......... .++|++++++ +++.....|...+.
T Consensus        45 V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~-~~~~s~d~~~-l~~s~dg~v~lWd~  122 (357)
T 4g56_B           45 IGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVT-DVAWVSEKGI-LVASDSGAVELWEI  122 (357)
T ss_dssp             EEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEE-EEEEETTTEE-EEEETTSCEEEC--
T ss_pred             EEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEE-EEEEcCCCCE-EEEECCCEEEEeec
Confidence            4679999999888765 3      567888863 33211     1112233456 8999999988 55554433433332


Q ss_pred             -CC-cE---EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-cc
Q 030700           79 -EG-VT---VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LY  152 (173)
Q Consensus        79 -~g-~~---~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~  152 (173)
                       ++ ..   .+...  +. ......++++|+|+++++-.                 .++.|..+|..+++....... ..
T Consensus       123 ~~~~~~~~~~~~~~--~h-~~~V~~v~~spdg~~l~sgs-----------------~dg~v~iwd~~~~~~~~~~~~h~~  182 (357)
T 4g56_B          123 LEKESLLVNKFAKY--EH-DDIVKTLSVFSDGTQAVSGG-----------------KDFSVKVWDLSQKAVLKSYNAHSS  182 (357)
T ss_dssp             ------CCCCEEEC--CC-SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSS
T ss_pred             cccceeEEEeeccC--CC-CCCEEEEEECCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCC
Confidence             33 11   11110  10 13467899999998777632                 347888999988876555443 45


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      ..+.++|+++++.++++
T Consensus       183 ~v~~v~~s~~~~~~~~s  199 (357)
T 4g56_B          183 EVNCVAACPGKDTIFLS  199 (357)
T ss_dssp             CEEEEEECTTCSSCEEE
T ss_pred             CEEEEEEccCCCceeee
Confidence            56789999987644443

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=98.51  E-value=9e-06  Score=63.33  Aligned_cols=138  Identities=13%  Similarity=0.123  Sum_probs=89.3

Q ss_pred             CCcceEEEcCCCC-EEEEcCCCeEEEEcC-CCcEE-----EeccccCccccceEEccC---CcEEEEEeCCCeEEEEcc-
Q 030700           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWE-----DWHQVGSQSLLGLTTTKE---NNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~~~i~~~~~-~g~~~-----~~~~~~~~p~~gl~~~~~---g~l~~v~~~~~~i~~~~~-   78 (173)
                      ..+.+++|+|+|. |++++.++.|+.++. ++...     .+........ .++++++   +++++.+.....|..++. 
T Consensus       150 ~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~sp~~~~~~~l~s~~~d~~i~vwd~~  228 (450)
T 2vdu_B          150 KRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLT-DVHLIKDSDGHQFIITSDRDEHIKISHYP  228 (450)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEE-EEEEEECTTSCEEEEEEETTSCEEEEEES
T ss_pred             CCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceE-EEEEcCCCCCCcEEEEEcCCCcEEEEECC
Confidence            4567899999885 555668899999984 33322     2223345567 9999999   888566655545555553 


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc------
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------  150 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------  150 (173)
                      .+  ...+.....    ..+..++++ +|.++++..                 .++.|..+|..+++.......      
T Consensus       229 ~~~~~~~~~~~h~----~~v~~~~~s-d~~~l~s~~-----------------~d~~v~vwd~~~~~~~~~~~~~~~~~~  286 (450)
T 2vdu_B          229 QCFIVDKWLFGHK----HFVSSICCG-KDYLLLSAG-----------------GDDKIFAWDWKTGKNLSTFDYNSLIKP  286 (450)
T ss_dssp             CTTCEEEECCCCS----SCEEEEEEC-STTEEEEEE-----------------SSSEEEEEETTTCCEEEEEECHHHHGG
T ss_pred             CCceeeeeecCCC----CceEEEEEC-CCCEEEEEe-----------------CCCeEEEEECCCCcEeeeecchhhhhh
Confidence            44  333221111    356889999 998777632                 347899999887764333321      


Q ss_pred             --------------------ccCcceEEEccCCCEEEEEe
Q 030700          151 --------------------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 --------------------~~~p~gi~~~~dg~~lyv~~  170 (173)
                                          -.....|+++|++++|+++.
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~~~l~~~~  326 (450)
T 2vdu_B          287 YLNDQHLAPPRFQNENNDIIEFAVSKIIKSKNLPFVAFFV  326 (450)
T ss_dssp             GCCTTSBC----------CBCCCEEEEEECSSSSEEEEEE
T ss_pred             hhhhcccccccccccccccceEEEEEEEEeCCCCEEEEEE
Confidence                                12345799999999998874

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.51  E-value=1.9e-06  Score=66.18  Aligned_cols=129  Identities=16%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCCCc---EEE-ec-------cccCccccc---eEEccCCcEEEEEeC---C---
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNGT---WED-WH-------QVGSQSLLG---LTTTKENNVIIVCDS---Q---   70 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~---~~~-~~-------~~~~~p~~g---l~~~~~g~l~~v~~~---~---   70 (173)
                      .|+  +...++.+|+... +.++.+|..+.   ... +.       .....|. |   ++++++++.+|++..   +   
T Consensus       215 ~P~--~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~-g~~~v~~s~dg~~lyV~~~~~~~~~~  290 (368)
T 1mda_H          215 QAA--QANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSA-GFQMVAKLKNTDGIMILTVEHSRSCL  290 (368)
T ss_dssp             CCE--EETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEEC-SSSCEEEETTTTEEEEEEEECSSCTT
T ss_pred             Ccc--ccccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccC-cceeeEEcCCCCEEEEEeccccCccc
Confidence            455  3333556676666 88999986542   111 11       1223466 6   889999888798754   2   


Q ss_pred             ---CeEEEEccCCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           71 ---QGLLKVSEEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        71 ---~~i~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                         .++..+|..-.+.+....-+   ..|++|++++||+ +|+++..                .++.|..+|+.++++..
T Consensus       291 ~~~~~~~ViD~~t~~vv~~i~vg---~~p~gi~~s~Dg~~l~va~~~----------------~~~~VsVID~~t~kvv~  351 (368)
T 1mda_H          291 AAAENTSSVTASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSA----------------GTEVLDIYDAASDQDQS  351 (368)
T ss_dssp             SCEEEEEEEESSSCCEEECCEEE---EEECEEEECCSSSCEEEEEET----------------TTTEEEEEESSSCEEEE
T ss_pred             ccCCCEEEEECCCCeEEEEEECC---CCcceEEECCCCCEEEEEccC----------------CCCeEEEEECCCCcEEE
Confidence               35667775322222222112   2699999999996 8888631                24799999999998877


Q ss_pred             eeccccCcceEEEccC
Q 030700          147 VLDGLYFANGVALSED  162 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~d  162 (173)
                      .......|.+|++.+.
T Consensus       352 ~I~vg~~P~~i~~~~~  367 (368)
T 1mda_H          352 SVELDKGPESLSVQNE  367 (368)
T ss_dssp             ECCCCSCCCEEECCCC
T ss_pred             EEECCCCCCEEEeecC
Confidence            7777889999998653

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=98.50  E-value=3e-06  Score=68.15  Aligned_cols=138  Identities=11%  Similarity=0.008  Sum_probs=85.5

Q ss_pred             CcceEEEcCCCCEEEEcC---CC--eEEEEcC--CCcEEEeccccCccccceEEccCCc-EEEEEeCCCeEEEEcc-CC-
Q 030700           11 HPEDVSVDGNGVLYTATG---DG--WIKRMHP--NGTWEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE-EG-   80 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~---~~--~i~~~~~--~g~~~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~~~-~g-   80 (173)
                      ....++|+|+..+|.++.   +.  .|+.++.  +|....+.. ..... ..+++++|+ ++|++....++..++. .| 
T Consensus        66 ~~~~~~~spd~~l~~~~~~~g~~~~~l~~~~~~~~g~~~~l~~-~~~~~-~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~  143 (582)
T 3o4h_A           66 SVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEA-VKPMR-ILSGVDTGEAVVFTGATEDRVALYALDGGG  143 (582)
T ss_dssp             EECEECTTCSEEEEEEECSTTSCCEEEEEEETTSTTCCEECTT-SCSBE-EEEEEECSSCEEEEEECSSCEEEEEEETTE
T ss_pred             ccccccCCCCeEEEEeccCCCCcceEEEEEeccCCCccccccC-CCCce-eeeeCCCCCeEEEEecCCCCceEEEccCCc
Confidence            456788888844444443   22  5777877  666554322 22334 557777774 3366655555555564 55 


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      ...+....      . ..++++|||+.++.....             ......|+++|.++++.+.+.......+.++||
T Consensus       144 ~~~l~~~~------~-~~~~~spDG~~la~~~~~-------------~~~~~~i~~~d~~~g~~~~l~~~~~~~~~~~~S  203 (582)
T 3o4h_A          144 LRELARLP------G-FGFVSDIRGDLIAGLGFF-------------GGGRVSLFTSNLSSGGLRVFDSGEGSFSSASIS  203 (582)
T ss_dssp             EEEEEEES------S-CEEEEEEETTEEEEEEEE-------------ETTEEEEEEEETTTCCCEEECCSSCEEEEEEEC
T ss_pred             EEEeecCC------C-ceEEECCCCCEEEEEEEc-------------CCCCeEEEEEcCCCCCceEeecCCCccccceEC
Confidence            44444321      1 789999999865532110             012257999999888887776555556889999


Q ss_pred             cCCCEEEEEe
Q 030700          161 EDERFLVVCE  170 (173)
Q Consensus       161 ~dg~~lyv~~  170 (173)
                      |||+.|+.++
T Consensus       204 pDG~~l~~~~  213 (582)
T 3o4h_A          204 PGMKVTAGLE  213 (582)
T ss_dssp             TTSCEEEEEE
T ss_pred             CCCCEEEEcc
Confidence            9999998654

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=98.49  E-value=1.9e-05  Score=58.80  Aligned_cols=139  Identities=13%  Similarity=0.046  Sum_probs=89.1

Q ss_pred             CCcceEEEcCCCCEEEEc-CC-----CeEEEEcCC-Cc----EE--------EeccccC--ccccceEEccCCcEEEEEe
Q 030700           10 NHPEDVSVDGNGVLYTAT-GD-----GWIKRMHPN-GT----WE--------DWHQVGS--QSLLGLTTTKENNVIIVCD   68 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~-----~~i~~~~~~-g~----~~--------~~~~~~~--~p~~gl~~~~~g~l~~v~~   68 (173)
                      ....+++++|++..+++. .+     +.|..|+.. +.    ..        .+.....  ... .+++++++++++++.
T Consensus       116 ~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~  194 (369)
T 3zwl_B          116 VPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAAT-VAGWSTKGKYIIAGH  194 (369)
T ss_dssp             SCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEE-EEEECGGGCEEEEEE
T ss_pred             CCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCcccee-EEEEcCCCCEEEEEc
Confidence            346789999988665444 55     788888732 11    11        1111111  566 899999999866665


Q ss_pred             CCCeEEEEcc-C-C-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           69 SQQGLLKVSE-E-G-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        69 ~~~~i~~~~~-~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      ....+..++. . + .........    .....++++|+|.++++..                 .++.|..+|..+++..
T Consensus       195 ~dg~i~i~d~~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~  253 (369)
T 3zwl_B          195 KDGKISKYDVSNNYEYVDSIDLHE----KSISDMQFSPDLTYFITSS-----------------RDTNSFLVDVSTLQVL  253 (369)
T ss_dssp             TTSEEEEEETTTTTEEEEEEECCS----SCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEE
T ss_pred             CCCEEEEEECCCCcEeEEEEecCC----CceeEEEECCCCCEEEEec-----------------CCceEEEEECCCCcee
Confidence            5555666664 3 3 221111111    3567899999998666531                 3478999999877765


Q ss_pred             EeeccccCcceEEEccCCCEEEEEe
Q 030700          146 LVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       146 ~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ...........++|+|+++.++++.
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~l~~~~  278 (369)
T 3zwl_B          254 KKYETDCPLNTAVITPLKEFIILGG  278 (369)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEE
T ss_pred             eeecCCCCceeEEecCCCceEEEee
Confidence            5555556667899999999888764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.48  E-value=2.1e-06  Score=64.85  Aligned_cols=143  Identities=7%  Similarity=-0.104  Sum_probs=80.7

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcCC-Cc----EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-CcE
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPN-GT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-GVT   82 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~-g~----~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g~~   82 (173)
                      ....++++.|+|.++ .+..++.|..|+.. ++    ...+........ .+++++++++++.+.....+...+.. +..
T Consensus        56 ~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~  134 (377)
T 3dwl_C           56 KIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAAT-FVRWSPNEDKFAVGSGARVISVCYFEQEND  134 (377)
T ss_dssp             SCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEE-EEECCTTSSCCEEEESSSCEEECCC-----
T ss_pred             ceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceE-EEEECCCCCEEEEEecCCeEEEEEECCccc
Confidence            456789999988654 55578889998853 33    333334455667 99999999885555544434444432 210


Q ss_pred             -EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC------------------Ce
Q 030700           83 -VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST------------------NQ  143 (173)
Q Consensus        83 -~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~------------------~~  143 (173)
                       .+.....+........++++|+|.++++-.                 .++.|..+|..+                  ++
T Consensus       135 ~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  197 (377)
T 3dwl_C          135 WWVSKHLKRPLRSTILSLDWHPNNVLLAAGC-----------------ADRKAYVLSAYVRDVDAKPEASVWGSRLPFNT  197 (377)
T ss_dssp             CCCCEEECSSCCSCEEEEEECTTSSEEEEEE-----------------SSSCEEEEEECCSSCC-CCCSCSSCSCCCEEE
T ss_pred             ceeeeEeecccCCCeEEEEEcCCCCEEEEEe-----------------CCCEEEEEEEEecccCCCccccccccccchhh
Confidence             011111111124578899999998666532                 235676676532                  11


Q ss_pred             eEEeeccccCcceEEEccCCCEEEEEe
Q 030700          144 TSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ...........+.++|+|++++|+.+.
T Consensus       198 ~~~~~~~~~~v~~~~~sp~~~~l~~~~  224 (377)
T 3dwl_C          198 VCAEYPSGGWVHAVGFSPSGNALAYAG  224 (377)
T ss_dssp             EEECCCCSSSEEEEEECTTSSCEEEEE
T ss_pred             hhhcccCCceEEEEEECCCCCEEEEEe
Confidence            111112234457899999999777654

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.46  E-value=1.3e-05  Score=61.33  Aligned_cols=133  Identities=14%  Similarity=0.136  Sum_probs=83.7

Q ss_pred             EEEcCCCCEEE-EcCCCeEEEEcCC-CcEEEe-ccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEecc
Q 030700           15 VSVDGNGVLYT-ATGDGWIKRMHPN-GTWEDW-HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQF   88 (173)
Q Consensus        15 l~~~~~g~l~~-~~~~~~i~~~~~~-g~~~~~-~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~   88 (173)
                      .++.+++.+++ +..++.|..|+.. ++.... ........ .+++++++++|+.+.....+..++. ++  ...+.. .
T Consensus       103 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h  180 (420)
T 3vl1_A          103 DTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEIT-KLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-H  180 (420)
T ss_dssp             EEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-C
T ss_pred             EEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccE-EEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-C
Confidence            35667886664 4488899999964 444333 24455667 9999999998555554444555553 44  444421 1


Q ss_pred             CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc------------------
Q 030700           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------------------  150 (173)
Q Consensus        89 ~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------------------  150 (173)
                      .    .....++++|+|.++++..                 .++.|..+|..+++.......                  
T Consensus       181 ~----~~v~~~~~~~~~~~l~s~~-----------------~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  239 (420)
T 3vl1_A          181 R----ATVTDIAIIDRGRNVLSAS-----------------LDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTD  239 (420)
T ss_dssp             S----SCEEEEEEETTTTEEEEEE-----------------TTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCC
T ss_pred             C----CcEEEEEEcCCCCEEEEEc-----------------CCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCc
Confidence            1    3567899999998666532                 346788888877765444332                  


Q ss_pred             -------ccCcceEEEccCCCEEEEEe
Q 030700          151 -------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 -------~~~p~gi~~~~dg~~lyv~~  170 (173)
                             ......++|+|+++.|+++.
T Consensus       240 ~~~~~~~~~~v~~~~~s~~~~~l~~~~  266 (420)
T 3vl1_A          240 RQLHEISTSKKNNLEFGTYGKYVIAGH  266 (420)
T ss_dssp             SSCGGGCCCCCCTTCSSCTTEEEEEEE
T ss_pred             ceeeecccCcccceEEcCCCCEEEEEc
Confidence                   12234577788888777654

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=98.46  E-value=4.1e-06  Score=72.03  Aligned_cols=135  Identities=9%  Similarity=0.000  Sum_probs=90.4

Q ss_pred             CcceEEEc-CCCC-EEEEcCCCeEEEEcCC-CcEEEeccccC-ccccceEEccCCcEEEEEeCCCeEE-EEccCC--cEE
Q 030700           11 HPEDVSVD-GNGV-LYTATGDGWIKRMHPN-GTWEDWHQVGS-QSLLGLTTTKENNVIIVCDSQQGLL-KVSEEG--VTV   83 (173)
Q Consensus        11 ~p~~l~~~-~~g~-l~~~~~~~~i~~~~~~-g~~~~~~~~~~-~p~~gl~~~~~g~l~~v~~~~~~i~-~~~~~g--~~~   83 (173)
                      .+.+++|+ |+|. |.+.. .+.|+.++.+ +....+..... ... .++|+ +|+.++++.....++ .++.++  ...
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~  373 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYV-RRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEK  373 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEE-EECSS-SEEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEE-eeeEc-CCCeEEEEECCCceEEEEECCCCCceE
Confidence            47889999 9985 55444 6789999864 44444444444 566 88899 887656655555677 666544  333


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d  162 (173)
                      +. . .   ...+..++++|||+.+++..                 .++.|+.+|.++++...+..+ ......++||||
T Consensus       374 l~-~-~---~~~~~~~~~SpDG~~la~~~-----------------~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpD  431 (1045)
T 1k32_A          374 FE-E-N---LGNVFAMGVDRNGKFAVVAN-----------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDN  431 (1045)
T ss_dssp             CC-C-C---CCSEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTT
T ss_pred             ec-C-C---ccceeeeEECCCCCEEEEEC-----------------CCCeEEEEECCCCceEEeccCCCCCccceEECCC
Confidence            32 1 1   13567899999998544321                 235899999998887777643 344478999999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      |++|+++.
T Consensus       432 G~~la~~~  439 (1045)
T 1k32_A          432 SRFIAYGF  439 (1045)
T ss_dssp             SCEEEEEE
T ss_pred             CCeEEEEe
Confidence            99886653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.44  E-value=9.4e-06  Score=67.35  Aligned_cols=139  Identities=10%  Similarity=0.015  Sum_probs=89.1

Q ss_pred             cCCcceEEEcCCCCEE-EEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cE
Q 030700            9 VNHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~   82 (173)
                      -....+++|+|+|.+. ++..++.|..|+. +++... +........ +++|++++++++++.....+..++. ++  ..
T Consensus        13 ~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~   91 (814)
T 3mkq_A           13 SDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVR-AGKFIARKNWIIVGSDDFRIRVFNYNTGEKVV   91 (814)
T ss_dssp             CSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEEEGGGTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            4567899999998755 4557889999984 555433 333445567 9999999998565554444555553 45  33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-eeEEeec-cccCcceEEEc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-QTSLVLD-GLYFANGVALS  160 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~~~~~~~-~~~~p~gi~~~  160 (173)
                      .+. ...    .....++++|+|..+++..                 .++.|..++.+++ ....... .......++|+
T Consensus        92 ~~~-~~~----~~v~~~~~s~~~~~l~~~~-----------------~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~  149 (814)
T 3mkq_A           92 DFE-AHP----DYIRSIAVHPTKPYVLSGS-----------------DDLTVKLWNWENNWALEQTFEGHEHFVMCVAFN  149 (814)
T ss_dssp             EEE-CCS----SCEEEEEECSSSSEEEEEE-----------------TTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEE
T ss_pred             EEe-cCC----CCEEEEEEeCCCCEEEEEc-----------------CCCEEEEEECCCCceEEEEEcCCCCcEEEEEEE
Confidence            332 111    3567899999997655421                 3467888887655 3333333 34456789999


Q ss_pred             c-CCCEEEEEe
Q 030700          161 E-DERFLVVCE  170 (173)
Q Consensus       161 ~-dg~~lyv~~  170 (173)
                      | +++.++++.
T Consensus       150 p~~~~~l~~~~  160 (814)
T 3mkq_A          150 PKDPSTFASGC  160 (814)
T ss_dssp             TTEEEEEEEEE
T ss_pred             cCCCCEEEEEe
Confidence            9 776666553

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.44  E-value=6.1e-06  Score=66.63  Aligned_cols=135  Identities=14%  Similarity=0.033  Sum_probs=79.9

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeE------------------EEEcCCCcEEEe-----------c-cccCccccceEEc
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWI------------------KRMHPNGTWEDW-----------H-QVGSQSLLGLTTT   58 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i------------------~~~~~~g~~~~~-----------~-~~~~~p~~gl~~~   58 (173)
                      .+-.+|+|.|||.++++. .++.|                  ..+.|+|....+           . ....... +++|+
T Consensus        16 ~~v~sv~~SpDG~~iASas~D~TV~d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~-~vawS   94 (588)
T 2j04_A           16 DWKNNLTWARDGTLYLTTFPDISIGQPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPR-VCKPS   94 (588)
T ss_dssp             SSSCCEEECTTSCEEEECSSSEEEEEECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEE-EEEEC
T ss_pred             ccEEEEEECCCCCEEEEEcCCceeecccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEE-EEEEC
Confidence            457789999999999887 55555                  223344421111           0 1123456 99999


Q ss_pred             cCCcEEEEEeCCCeEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEE
Q 030700           59 KENNVIIVCDSQQGLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKY  137 (173)
Q Consensus        59 ~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~  137 (173)
                      |+|+++.++.....+..++.++ ...+. .....+-...+.++++|||++.++-                 ..+|.|..+
T Consensus        95 PdG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsg-----------------s~DGtVkIW  156 (588)
T 2j04_A           95 PIDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVG-----------------NEDGELQFF  156 (588)
T ss_dssp             SSSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEE-----------------ETTSEEEEE
T ss_pred             CCCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEE-----------------cCCCEEEEE
Confidence            9999844444333344444455 33322 1100011357899999999855542                 235789899


Q ss_pred             cCCCCee--------EEeec----cccCcceEEEccCC
Q 030700          138 DPSTNQT--------SLVLD----GLYFANGVALSEDE  163 (173)
Q Consensus       138 d~~~~~~--------~~~~~----~~~~p~gi~~~~dg  163 (173)
                      |..++..        ..+..    .......++|+|||
T Consensus       157 d~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg  194 (588)
T 2j04_A          157 SIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV  194 (588)
T ss_dssp             ECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE
T ss_pred             ECCCCccccccceeeeeeecccccccccEEEEEEcCCc
Confidence            9887642        23211    13467789999998

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=98.44  E-value=4.2e-05  Score=57.40  Aligned_cols=138  Identities=12%  Similarity=-0.017  Sum_probs=82.1

Q ss_pred             CCcceEEEcCCCCEEE-EcCCCeEEEEcCCCcEEE-ec---cccCccccceEEccCC----------cEEEEEeCCCeEE
Q 030700           10 NHPEDVSVDGNGVLYT-ATGDGWIKRMHPNGTWED-WH---QVGSQSLLGLTTTKEN----------NVIIVCDSQQGLL   74 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~~~~~i~~~~~~g~~~~-~~---~~~~~p~~gl~~~~~g----------~l~~v~~~~~~i~   74 (173)
                      ....+++++|+|..++ +..++.|..|+..+.... ..   ....... .+++++++          .+++.+.....+.
T Consensus       119 ~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~  197 (343)
T 2xzm_R          119 SEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVS-CVRYSPIMKSANKVQPFAPYFASVGWDGRLK  197 (343)
T ss_dssp             SCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEE-EEEECCCCCSCSCCCSSCCEEEEEETTSEEE
T ss_pred             CcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceee-eeeeccccccccccCCCCCEEEEEcCCCEEE
Confidence            3467899999886554 448889999987654332 21   1223455 78888876          5634443333344


Q ss_pred             EEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeecccc
Q 030700           75 KVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLDGLY  152 (173)
Q Consensus        75 ~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~~~~  152 (173)
                      ..+..+ .........    .....++++|+|+++++-                 ..++.|..+|..+ ...........
T Consensus       198 iwd~~~~~~~~~~~h~----~~v~~~~~s~~g~~l~sg-----------------s~dg~v~iwd~~~~~~~~~~~~~~~  256 (343)
T 2xzm_R          198 VWNTNFQIRYTFKAHE----SNVNHLSISPNGKYIATG-----------------GKDKKLLIWDILNLTYPQREFDAGS  256 (343)
T ss_dssp             EEETTTEEEEEEECCS----SCEEEEEECTTSSEEEEE-----------------ETTCEEEEEESSCCSSCSEEEECSS
T ss_pred             EEcCCCceeEEEcCcc----ccceEEEECCCCCEEEEE-----------------cCCCeEEEEECCCCcccceeecCCC
Confidence            444444 222111111    356789999999877763                 2347888888732 22222221223


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      ..+.++|+|+++++.++
T Consensus       257 ~v~~v~~sp~~~~la~~  273 (343)
T 2xzm_R          257 TINQIAFNPKLQWVAVG  273 (343)
T ss_dssp             CEEEEEECSSSCEEEEE
T ss_pred             cEEEEEECCCCCEEEEE
Confidence            46789999999877654

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=98.44  E-value=3.4e-05  Score=57.48  Aligned_cols=144  Identities=12%  Similarity=0.081  Sum_probs=90.7

Q ss_pred             ecCCccCCcceEEEcCC---C--CEEEEcCCCeEEEEcCC-Cc-EEEecc-----ccCccccceEEccC----CcEEEEE
Q 030700            4 LGEGIVNHPEDVSVDGN---G--VLYTATGDGWIKRMHPN-GT-WEDWHQ-----VGSQSLLGLTTTKE----NNVIIVC   67 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~---g--~l~~~~~~~~i~~~~~~-g~-~~~~~~-----~~~~p~~gl~~~~~----g~l~~v~   67 (173)
                      +..+--....++++.|+   +  .++++..++.|..|+.. ++ +..+..     ...... .++++++    |++++++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~l~~~   91 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFY-TCAWTYDSNTSHPLLAVA   91 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEE-EEEEEECTTTCCEEEEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEE-EEEeccCCCCCCCEEEEe
Confidence            33344456788999973   3  36666666788888853 43 222211     223456 8999988    6674555


Q ss_pred             eCCCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           68 DSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        68 ~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      .....+..++. ++  ...+. ...    .....++++| ++.++++-.                 .++.|..+|..+++
T Consensus        92 ~~dg~i~v~d~~~~~~~~~~~-~~~----~~i~~~~~~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~  149 (366)
T 3k26_A           92 GSRGIIRIINPITMQCIKHYV-GHG----NAINELKFHPRDPNLLLSVS-----------------KDHALRLWNIQTDT  149 (366)
T ss_dssp             ETTCEEEEECTTTCCEEEEEE-SCC----SCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTTTE
T ss_pred             cCCCEEEEEEchhceEeeeec-CCC----CcEEEEEECCCCCCEEEEEe-----------------CCCeEEEEEeecCe
Confidence            54444555553 44  33332 111    3568899999 888766632                 34789999988777


Q ss_pred             eEEee----ccccCcceEEEccCCCEEEEEe
Q 030700          144 TSLVL----DGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ~~~~~----~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .....    ........++|+|+++.|+.+.
T Consensus       150 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  180 (366)
T 3k26_A          150 LVAIFGGVEGHRDEVLSADYDLLGEKIMSCG  180 (366)
T ss_dssp             EEEEECSTTSCSSCEEEEEECTTSSEEEEEE
T ss_pred             EEEEecccccccCceeEEEECCCCCEEEEec
Confidence            65554    2345567899999999887764

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=98.44  E-value=6.4e-05  Score=57.43  Aligned_cols=144  Identities=9%  Similarity=0.072  Sum_probs=88.6

Q ss_pred             cCCcceEEEcCCCCEEE-EcCCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cE
Q 030700            9 VNHPEDVSVDGNGVLYT-ATGDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~-~~~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~   82 (173)
                      .....+++++|++.+++ +..++.|..|+. +++. ..+........ .+++++++++++.+.....+..++. .+  ..
T Consensus       139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~  217 (420)
T 3vl1_A          139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVT-DIAIIDRGRNVLSASLDGTIRLWECGTGTTIH  217 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEE
T ss_pred             cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEE-EEEEcCCCCEEEEEcCCCcEEEeECCCCceeE
Confidence            35677899999887554 448899999985 3443 33434455667 9999999998555544444555553 44  23


Q ss_pred             EEEeccCC-c------------------cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           83 VLVSQFNG-S------------------QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        83 ~~~~~~~~-~------------------~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      .+...... .                  .......++++|+|+++++-                 ..++.|..+|..+++
T Consensus       218 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~-----------------~~dg~i~i~d~~~~~  280 (420)
T 3vl1_A          218 TFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAG-----------------HVSGVITVHNVFSKE  280 (420)
T ss_dssp             EECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEE-----------------ETTSCEEEEETTTCC
T ss_pred             EeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEE-----------------cCCCeEEEEECCCCc
Confidence            32211000 0                  01234556777888755542                 234789999988765


Q ss_pred             eEEee-cc-ccCcceEEEccCCC-EEEEEe
Q 030700          144 TSLVL-DG-LYFANGVALSEDER-FLVVCE  170 (173)
Q Consensus       144 ~~~~~-~~-~~~p~gi~~~~dg~-~lyv~~  170 (173)
                      ..... .. ......++|+|+++ .|+.+.
T Consensus       281 ~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~  310 (420)
T 3vl1_A          281 QTIQLPSKFTCSCNSLTVDGNNANYIYAGY  310 (420)
T ss_dssp             EEEEECCTTSSCEEEEEECSSCTTEEEEEE
T ss_pred             eeEEcccccCCCceeEEEeCCCCCEEEEEe
Confidence            43333 22 34567899999998 676654

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=98.43  E-value=4.3e-05  Score=55.72  Aligned_cols=133  Identities=13%  Similarity=0.101  Sum_probs=86.9

Q ss_pred             CCcceEEEcC-CCCEE-EEcCCCeEEEEcCCCcEEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           10 NHPEDVSVDG-NGVLY-TATGDGWIKRMHPNGTWEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~-~~~~~~~i~~~~~~g~~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      .....+++.+ ++.++ ++..++.|..|+.......+.. ...... .+++++++++ +++.....+..++. ++  ...
T Consensus       143 ~~v~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~-~~~~~~~~~~-~~~~~dg~i~i~d~~~~~~~~~  220 (313)
T 3odt_A          143 ASVWDAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGIHNDVVR-HLAVVDDGHF-ISCSNDGLIKLVDMHTGDVLRT  220 (313)
T ss_dssp             SCEEEEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSSCSSCEE-EEEEEETTEE-EEEETTSEEEEEETTTCCEEEE
T ss_pred             CceeEEEEccCCCCEEEEEECCCCEEEEecCceEEEEeccCcccEE-EEEEcCCCeE-EEccCCCeEEEEECCchhhhhh
Confidence            4456777777 66544 5558889999984333444433 444566 8999999885 76665555666664 45  333


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d  162 (173)
                      +. ...    .....++++|+|.++.+.                  .++.|..+|..+++....... ......++|+|+
T Consensus       221 ~~-~~~----~~i~~~~~~~~~~l~~~~------------------~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~  277 (313)
T 3odt_A          221 YE-GHE----SFVYCIKLLPNGDIVSCG------------------EDRTVRIWSKENGSLKQVITLPAISIWSVDCMSN  277 (313)
T ss_dssp             EE-CCS----SCEEEEEECTTSCEEEEE------------------TTSEEEEECTTTCCEEEEEECSSSCEEEEEECTT
T ss_pred             hh-cCC----ceEEEEEEecCCCEEEEe------------------cCCEEEEEECCCCceeEEEeccCceEEEEEEccC
Confidence            32 111    356789999999766553                  347899999887765444433 345678999999


Q ss_pred             CCEEE
Q 030700          163 ERFLV  167 (173)
Q Consensus       163 g~~ly  167 (173)
                      ++.+.
T Consensus       278 ~~~~~  282 (313)
T 3odt_A          278 GDIIV  282 (313)
T ss_dssp             SCEEE
T ss_pred             CCEEE
Confidence            98443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.43  E-value=1.9e-05  Score=60.87  Aligned_cols=145  Identities=10%  Similarity=0.077  Sum_probs=86.0

Q ss_pred             CCccCCcceEEEcCCCCEEEEcCCCeEEEEcCC--CcEEE--------eccccCccccceEEccCC-cEEEEEeCCCeEE
Q 030700            6 EGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPN--GTWED--------WHQVGSQSLLGLTTTKEN-NVIIVCDSQQGLL   74 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~--g~~~~--------~~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~   74 (173)
                      .+.-....++++.|+|.++++..++.|..|+..  +....        +........ .+++++++ ++++.+.....+.
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSADDLRINLWHLEITDRSFNIVDIKPANMEELTEVIT-AAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEECSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEE-EEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEeCCCeEEEEECCCCCceeeeeecccccccccCcceE-EEEECCCCCcEEEEEeCCCeEE
Confidence            333455778999999987766678899999865  22222        112334567 99999998 8845554444455


Q ss_pred             EEcc-CC-c----EEEEeccCCc-c-------ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030700           75 KVSE-EG-V----TVLVSQFNGS-Q-------LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS  140 (173)
Q Consensus        75 ~~~~-~g-~----~~~~~~~~~~-~-------~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  140 (173)
                      .++. .+ .    .......... .       ......++++|+|.++++..                 . +.|..+|..
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----------------~-~~v~iwd~~  314 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----------------Y-LSVKVWDLN  314 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----------------S-SEEEEEETT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----------------C-CeEEEEeCC
Confidence            5553 33 2    1222211100 0       01567899999998777631                 2 688888886


Q ss_pred             C-CeeEEeeccccC----------------cceEEEccCCCEEEEE
Q 030700          141 T-NQTSLVLDGLYF----------------ANGVALSEDERFLVVC  169 (173)
Q Consensus       141 ~-~~~~~~~~~~~~----------------p~gi~~~~dg~~lyv~  169 (173)
                      + +++.........                ...++|+|++++|+.+
T Consensus       315 ~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~  360 (447)
T 3dw8_B          315 MENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTG  360 (447)
T ss_dssp             CCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEE
T ss_pred             CCccccceeeccccccccccccccccccccceEEEECCCCCEEEEe
Confidence            4 433222222111                1238999999987654

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=98.43  E-value=6.4e-06  Score=66.86  Aligned_cols=136  Identities=14%  Similarity=0.156  Sum_probs=83.1

Q ss_pred             CcceEEEcCCCCEEEEc-CC----CeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC-c-
Q 030700           11 HPEDVSVDGNGVLYTAT-GD----GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG-V-   81 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~----~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g-~-   81 (173)
                      ...+++|+|+|..+++. .+    +.|+.|+.......+........ .++|+|++...+++...++.+++ +. .+ . 
T Consensus       105 ~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~~~~~~~l~gh~~~v~-~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~  183 (611)
T 1nr0_A          105 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSRPFRIISGSDDNTVAIFEGPPFKFK  183 (611)
T ss_dssp             CEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE-EEEECSSSSCEEEEEETTSCEEEEETTTBEEE
T ss_pred             ceEEEEECCCCCEEEEEECCCCceeEEEEeeCCCCcceecCCCCCce-EEEECCCCCeEEEEEeCCCeEEEEECCCCeEe
Confidence            45689999988766443 22    46777763222223333344567 99999998632444444444444 43 33 2 


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--------ccccC
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--------DGLYF  153 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--------~~~~~  153 (173)
                      ..+    .+. ......++++|||.++++-.                 .++.|..+|..+++.....        .....
T Consensus       184 ~~l----~~H-~~~V~~v~fspdg~~las~s-----------------~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~  241 (611)
T 1nr0_A          184 STF----GEH-TKFVHSVRYNPDGSLFASTG-----------------GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGS  241 (611)
T ss_dssp             EEE----CCC-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEECBCTTSSSCSSSSC
T ss_pred             eee----ccc-cCceEEEEECCCCCEEEEEE-----------------CCCcEEEEECCCCcEeeeeccccccccccCCC
Confidence            222    111 13578899999999877632                 3578888998777654433        12345


Q ss_pred             cceEEEccCCCEEEEE
Q 030700          154 ANGVALSEDERFLVVC  169 (173)
Q Consensus       154 p~gi~~~~dg~~lyv~  169 (173)
                      ...++|+||+++|+.+
T Consensus       242 V~~v~~spdg~~l~s~  257 (611)
T 1nr0_A          242 VFGLTWSPDGTKIASA  257 (611)
T ss_dssp             EEEEEECTTSSEEEEE
T ss_pred             EEEEEECCCCCEEEEE
Confidence            6789999999977654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=98.42  E-value=4.9e-06  Score=67.78  Aligned_cols=142  Identities=15%  Similarity=0.077  Sum_probs=86.1

Q ss_pred             eEEEc--CCC-C-EEEEc-CCCeEEEEcCC----CcEEEecc-----ccCccccceEEccCCcEEEEEeCC---------
Q 030700           14 DVSVD--GNG-V-LYTAT-GDGWIKRMHPN----GTWEDWHQ-----VGSQSLLGLTTTKENNVIIVCDSQ---------   70 (173)
Q Consensus        14 ~l~~~--~~g-~-l~~~~-~~~~i~~~~~~----g~~~~~~~-----~~~~p~~gl~~~~~g~l~~v~~~~---------   70 (173)
                      .+++.  |+| . |+++. .+..|+.++.+    +....+..     ...... .++|++||+.|+++...         
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~-~~~~spDg~~l~~~~~~~~~~~~~~~  159 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWA-DPVLLPERGEVWCMAEEFTGEGPSDV  159 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEE-EEEEETTTTEEEEEEEEECSSSTTCE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCcccc-CcEECCCCCEEEEEEecccCCCCCCc
Confidence            34454  777 5 56665 56789999977    55555443     234567 89999999875655432         


Q ss_pred             -CeEEEEcc-C------C-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCC
Q 030700           71 -QGLLKVSE-E------G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPS  140 (173)
Q Consensus        71 -~~i~~~~~-~------g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~  140 (173)
                       ..|+.++. .      + ...+..  .+.  .....++++|||+ |+++.... .. .        ......|+.+|.+
T Consensus       160 ~~~i~~~~~~~~~~~~~~~~~~l~~--~~~--~~~~~~~~SpDG~~la~~~~~~-~~-~--------~~~~~~i~~~d~~  225 (662)
T 3azo_A          160 RRFLAAVPLDGSAAADRSAVRELSD--DAH--RFVTGPRLSPDGRQAVWLAWDH-PR-M--------PWEGTELKTARVT  225 (662)
T ss_dssp             EEEEEEEETTSTTTTCGGGSEESSC--SCS--SEECCCEECTTSSEEEEEEECT-TC-C--------TTTCEEEEEEEEC
T ss_pred             eeEEEEEECCCCccccCCceeEEEe--cCC--CcccCceECCCCCEEEEEECCC-CC-C--------CCCCcEEEEEEEC
Confidence             25777774 4      5 333320  111  2456789999997 55543210 00 0        0022579999988


Q ss_pred             -CC---eeEEeecc-ccCcceEEEccCCCEEEEEe
Q 030700          141 -TN---QTSLVLDG-LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       141 -~~---~~~~~~~~-~~~p~gi~~~~dg~~lyv~~  170 (173)
                       ++   +.+.+..+ ......++|+|||+.+|+++
T Consensus       226 ~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~  260 (662)
T 3azo_A          226 EDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATD  260 (662)
T ss_dssp             TTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEEC
T ss_pred             CCCcccccEEeCCCCCceEcceEECCCCeEEEEEC
Confidence             46   55555544 35667899999999555554

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=98.41  E-value=2.4e-05  Score=58.33  Aligned_cols=67  Identities=13%  Similarity=-0.014  Sum_probs=45.1

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcCC-CcEEEeccccCccccceEE--ccCCcEEEEEeCCCeEEEEc
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTT--TKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~--~~~g~l~~v~~~~~~i~~~~   77 (173)
                      ....++++.|++.++ .+..++.|..|+.. ++............ .+++  ++++++++.+.....+..++
T Consensus        87 ~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~l~~~~~dg~i~vwd  157 (368)
T 3mmy_A           87 GPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQHDAPVK-TIHWIKAPNYSCVMTGSWDKTLKFWD  157 (368)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEEEECSSCEEEEEEETTSEEEEEC
T ss_pred             CCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeeccccCceE-EEEEEeCCCCCEEEEccCCCcEEEEE
Confidence            456789999988655 45588999999864 45444444455667 8999  88988755554444444444

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=98.39  E-value=4e-06  Score=63.35  Aligned_cols=140  Identities=10%  Similarity=0.016  Sum_probs=83.1

Q ss_pred             CCcceEEEcCCCC-EEEEcCCCeEEEEcCCC-c----EEEecc-ccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-
Q 030700           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPNG-T----WEDWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g-~----~~~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-   80 (173)
                      ....++++.|++. |+++..++.|..|+.+. +    ...+.. ...... .+++++++++++.+.....+..++.. + 
T Consensus       101 ~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~~~~~d~~i~iwd~~~~~  179 (377)
T 3dwl_C          101 RAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTIL-SLDWHPNNVLLAAGCADRKAYVLSAYVRD  179 (377)
T ss_dssp             SCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEE-EEEECTTSSEEEEEESSSCEEEEEECCSS
T ss_pred             CceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeE-EEEEcCCCCEEEEEeCCCEEEEEEEEecc
Confidence            4567899999885 44555788898888543 2    233333 445567 99999999985555444444444421 1 


Q ss_pred             ---------------cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-
Q 030700           81 ---------------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-  144 (173)
Q Consensus        81 ---------------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-  144 (173)
                                     .......+ + .......++++|+|.++++-.                 .++.|..+|..+++. 
T Consensus       180 ~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~v~~~~~sp~~~~l~~~~-----------------~d~~i~iwd~~~~~~~  240 (377)
T 3dwl_C          180 VDAKPEASVWGSRLPFNTVCAEY-P-SGGWVHAVGFSPSGNALAYAG-----------------HDSSVTIAYPSAPEQP  240 (377)
T ss_dssp             CC-CCCSCSSCSCCCEEEEEECC-C-CSSSEEEEEECTTSSCEEEEE-----------------TTTEEC-CEECSTTSC
T ss_pred             cCCCccccccccccchhhhhhcc-c-CCceEEEEEECCCCCEEEEEe-----------------CCCcEEEEECCCCCCc
Confidence                           01111112 1 113567899999998655521                 346777777766543 


Q ss_pred             ----EEeeccccCcceEEEccCCCEEEEE
Q 030700          145 ----SLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       145 ----~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                          ..+.........++|+|++++|..+
T Consensus       241 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~  269 (377)
T 3dwl_C          241 PRALITVKLSQLPLRSLLWANESAIVAAG  269 (377)
T ss_dssp             EEECCCEECSSSCEEEEEEEETTEEEEEE
T ss_pred             ceeeEeecCCCCceEEEEEcCCCCEEEEE
Confidence                2222223445789999999877654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.38  E-value=5.3e-05  Score=57.99  Aligned_cols=139  Identities=11%  Similarity=0.052  Sum_probs=88.8

Q ss_pred             CCcceEEEcCCCCEEEE-cCCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeC--CC-eEEEEcc-CC--
Q 030700           10 NHPEDVSVDGNGVLYTA-TGDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDS--QQ-GLLKVSE-EG--   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~-~~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~--~~-~i~~~~~-~g--   80 (173)
                      ....++++.|++.++++ ..++.|..||.. ++.. .+........ .+++++++..++++..  .+ .+..++. ++  
T Consensus       218 ~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~-~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          218 SEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVK-AVAWCPWQSNLLATGGGTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCC-EEEECTTSTTEEEEECCTTTCEEEEEETTTCCE
T ss_pred             CCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEE-EEEECCCCCCEEEEecCCCCCEEEEEECCCCCE
Confidence            45678999998876654 478999999854 4433 3334455667 9999997654365543  23 4555553 45  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee---ccccCcceE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL---DGLYFANGV  157 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~---~~~~~p~gi  157 (173)
                      ...+. .  .   .....++++|+|..+++..+               ..++.|..++..+++.....   ........+
T Consensus       297 ~~~~~-~--~---~~v~~~~~s~~~~~l~~~~g---------------~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~  355 (401)
T 4aez_A          297 VNTVD-A--G---SQVTSLIWSPHSKEIMSTHG---------------FPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYS  355 (401)
T ss_dssp             EEEEE-C--S---SCEEEEEECSSSSEEEEEEC---------------TTTCEEEEEEEETTEEEEEEEEECCSSCCCEE
T ss_pred             EEEEe-C--C---CcEEEEEECCCCCeEEEEee---------------cCCCcEEEEecCCccceeEEEecCCCCCEEEE
Confidence            33332 1  1   35688999999986665311               13467888887765544332   234556789


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|++++|+.+.
T Consensus       356 ~~s~dg~~l~s~~  368 (401)
T 4aez_A          356 ALSPDGRILSTAA  368 (401)
T ss_dssp             EECTTSSEEEEEC
T ss_pred             EECCCCCEEEEEe
Confidence            9999999887653

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.38  E-value=4.4e-05  Score=57.17  Aligned_cols=142  Identities=14%  Similarity=0.051  Sum_probs=85.2

Q ss_pred             CCcceEEEcCC--CCEE-EEcCCCeEEEEcCCCc----EEEeccccCccccceEEcc-------------CCcEEEEEeC
Q 030700           10 NHPEDVSVDGN--GVLY-TATGDGWIKRMHPNGT----WEDWHQVGSQSLLGLTTTK-------------ENNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~--g~l~-~~~~~~~i~~~~~~g~----~~~~~~~~~~p~~gl~~~~-------------~g~l~~v~~~   69 (173)
                      ....++++.|+  +.++ ++..++.|..|+....    ...+........ .+++++             ++++++++..
T Consensus       102 ~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  180 (379)
T 3jrp_A          102 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGA  180 (379)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEE-EEEECCCC----------CTTCEEEEEET
T ss_pred             cceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceE-EEEEcCccccccccccCCCCCCEEEEEeC
Confidence            45788999997  7655 4558889999985332    222323344556 899998             6888455544


Q ss_pred             CCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCC---CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           70 QQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASD---GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        70 ~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~d---G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      ...+..++. .+  ...+.....+. ......++++|+   |.++++..                 .++.|..||..++.
T Consensus       181 dg~i~i~d~~~~~~~~~~~~~~~~h-~~~v~~~~~sp~~~~~~~l~s~~-----------------~dg~i~iwd~~~~~  242 (379)
T 3jrp_A          181 DNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVS-----------------QDRTCIIWTQDNEQ  242 (379)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEE-----------------TTSCEEEEEESSTT
T ss_pred             CCeEEEEEecCCCcceeeEEEEecc-cCcEeEEEECCCCCCCCeEEEEe-----------------CCCEEEEEeCCCCC
Confidence            444555553 33  22222222221 135678999999   77666532                 34677777776542


Q ss_pred             ---eEEeec---cccCcceEEEccCCCEEEEEe
Q 030700          144 ---TSLVLD---GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ---~~~~~~---~~~~p~gi~~~~dg~~lyv~~  170 (173)
                         ......   .......++|+|++++|+++.
T Consensus       243 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~  275 (379)
T 3jrp_A          243 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  275 (379)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEEE
T ss_pred             ccceeeeeccccCCCcEEEEEEcCCCCEEEEec
Confidence               222222   234457899999999887754

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.38  E-value=2.4e-05  Score=65.09  Aligned_cols=136  Identities=18%  Similarity=0.194  Sum_probs=88.8

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEecc--c-----cCccccceEEccCCcEEEEEeCCCeEEEEccCC---
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQ--V-----GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG---   80 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~--~-----~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g---   80 (173)
                      ..+++.|++|.||++.. +.|.++++. ++...+..  .     ..... .|..|++|++ |++....++.+++...   
T Consensus       375 v~~i~~d~~g~lWigt~-~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~i~~d~~g~l-WigT~~~Gl~~~~~~~~~~  451 (758)
T 3ott_A          375 IRHIYEDKEQQLWIATD-GSINRYDYATRQFIHYNIVDNTGTYNTNWTY-YIFEDTAGQL-WISTCLGGIFVVDKHKLMQ  451 (758)
T ss_dssp             EEEEEECTTSCEEEEET-TEEEEEETTTTEEEEEEEECCC--CBSSSEE-EEEECTTSEE-EEEESSSCEEEEEHHHHHH
T ss_pred             eEEEEECCCCCEEEEeC-CcHhhcCcCCCcEEEeecCCCcCCCCCceEE-EEEEcCCCCE-EEEECCCceEEEccccccc
Confidence            46788888999999874 589999965 44444321  1     12345 6788889998 9887667899988431   


Q ss_pred             --cEEEE-----eccCCccccCCccEEEcCCCcEEE--EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-
Q 030700           81 --VTVLV-----SQFNGSQLRFANDVIEASDGSLYF--TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-  150 (173)
Q Consensus        81 --~~~~~-----~~~~~~~~~~~~~l~~~~dG~~~v--~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-  150 (173)
                        ...+.     ....+.+......|..|++|++|+  +.                   .+.|+++|+++++.+..... 
T Consensus       452 ~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t-------------------~~Gl~~~d~~~~~~~~~~~~~  512 (758)
T 3ott_A          452 STSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYN-------------------NKGIDKINPRTREVTKLFADE  512 (758)
T ss_dssp             CCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETT-------------------CSSEEEEETTTTEEEEECTTT
T ss_pred             cCCcceecccccccccccccceeeeEEEcCCCCEEEEccC-------------------CCCcEEEeCCCCceEEecCCC
Confidence              01121     111222223467789999999999  42                   14699999988877665321 


Q ss_pred             ---ccCcceEEEccCCCEEEEEe
Q 030700          151 ---LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 ---~~~p~gi~~~~dg~~lyv~~  170 (173)
                         ...++.+..+.+|+ ||++.
T Consensus       513 ~~~~~~~~~i~~d~~g~-lWigt  534 (758)
T 3ott_A          513 LTGEKSPNYLLCDEDGL-LWVGF  534 (758)
T ss_dssp             SCGGGCEEEEEECTTSC-EEEEE
T ss_pred             cCCCcccceEEECCCCC-EEEEe
Confidence               13456788788886 66653

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=98.37  E-value=9.4e-05  Score=54.98  Aligned_cols=138  Identities=12%  Similarity=0.148  Sum_probs=85.7

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~   84 (173)
                      ....++++.++|.++++. .++.|..||. +++.. .+........ .+++++++++++.+.....+...+..+  ...+
T Consensus        66 ~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~  144 (319)
T 3frx_A           66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVM-SVDIDKKASMIISGSRDKTIKVWTIKGQCLATL  144 (319)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSCEEEEEETTSCEEEEETTSCEEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEE-EEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            345678999998766544 8899999995 55543 3434445567 999999999844444333344444455  3333


Q ss_pred             EeccCCccccCCccEEEcCC------CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceE
Q 030700           85 VSQFNGSQLRFANDVIEASD------GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGV  157 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~d------G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi  157 (173)
                      ... .    .....+.+.|+      +.++++.                 ..++.|..+|..+.+......+ ....+.+
T Consensus       145 ~~h-~----~~v~~~~~~~~~~~~~~~~~l~s~-----------------~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~  202 (319)
T 3frx_A          145 LGH-N----DWVSQVRVVPNEKADDDSVTIISA-----------------GNDKMVKAWNLNQFQIEADFIGHNSNINTL  202 (319)
T ss_dssp             CCC-S----SCEEEEEECCC------CCEEEEE-----------------ETTSCEEEEETTTTEEEEEECCCCSCEEEE
T ss_pred             ecc-C----CcEEEEEEccCCCCCCCccEEEEE-----------------eCCCEEEEEECCcchhheeecCCCCcEEEE
Confidence            211 1    23455666664      3344442                 2457888899887765444433 4556789


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|++++|+.+.
T Consensus       203 ~~sp~g~~l~s~~  215 (319)
T 3frx_A          203 TASPDGTLIASAG  215 (319)
T ss_dssp             EECTTSSEEEEEE
T ss_pred             EEcCCCCEEEEEe
Confidence            9999999777653

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=98.37  E-value=6.7e-05  Score=57.83  Aligned_cols=131  Identities=15%  Similarity=0.181  Sum_probs=83.4

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-cEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-TWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~   82 (173)
                      .....+++++|+|.++++. .++.|..||..+ +... +........ .+++++++++++.+.....+..++. .+  ..
T Consensus       150 ~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~V~-~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~  228 (410)
T 1vyh_C          150 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVS-SVSIMPNGDHIVSASRDKTIKMWEVQTGYCVK  228 (410)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCCCEEETTSSCEEECCCCCSSCEE-EEEECSSSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCceeEEEcCCCCCEE-EEEEeCCCCEEEEEeCCCeEEEEECCCCcEEE
Confidence            3456789999998766555 888888888643 4333 333344566 9999999998444444444444453 55  33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~  161 (173)
                      .+... .    .....+.++++|.++++..                 .++.|..+|..+++......+ ....+.++|+|
T Consensus       229 ~~~~h-~----~~v~~~~~~~~g~~l~s~s-----------------~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~  286 (410)
T 1vyh_C          229 TFTGH-R----EWVRMVRPNQDGTLIASCS-----------------NDQTVRVWVVATKECKAELREHRHVVECISWAP  286 (410)
T ss_dssp             EEECC-S----SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTCCEEEEECCCSSCEEEEEECC
T ss_pred             EEeCC-C----ccEEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCceeeEecCCCceEEEEEEcC
Confidence            33211 1    3457789999998777632                 346888888877665444433 34456788887


Q ss_pred             C
Q 030700          162 D  162 (173)
Q Consensus       162 d  162 (173)
                      +
T Consensus       287 ~  287 (410)
T 1vyh_C          287 E  287 (410)
T ss_dssp             S
T ss_pred             c
Confidence            5

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=98.37  E-value=3.7e-05  Score=59.14  Aligned_cols=143  Identities=9%  Similarity=0.002  Sum_probs=85.3

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEEEcC-CCcE-----EEeccccC------------ccccceEEccCCcEEEEEeC
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHP-NGTW-----EDWHQVGS------------QSLLGLTTTKENNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~-~g~~-----~~~~~~~~------------~p~~gl~~~~~g~l~~v~~~   69 (173)
                      ....+++++|++ .++++. .++.|..||. .++.     ..+.....            ... .++++++|++|+.+..
T Consensus       227 ~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~g~~l~~~~~  305 (447)
T 3dw8_B          227 EVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSIS-DVKFSHSGRYMMTRDY  305 (447)
T ss_dssp             CCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEE-EEEECTTSSEEEEEES
T ss_pred             cceEEEEECCCCCcEEEEEeCCCeEEEEECcCCccccceeeEeccCCCccccccccccCceEE-EEEECCCCCEEEEeeC
Confidence            346789999987 666544 8889999984 3432     33322222            456 9999999999555554


Q ss_pred             CCeEEEEcc-C-C--cEEEEeccC--C--------ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEE
Q 030700           70 QQGLLKVSE-E-G--VTVLVSQFN--G--------SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLL  135 (173)
Q Consensus        70 ~~~i~~~~~-~-g--~~~~~~~~~--~--------~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~  135 (173)
                       ..+..++. . +  ...+.....  .        ........++++|+|..+++-.                 .++.|.
T Consensus       306 -~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s-----------------~dg~v~  367 (447)
T 3dw8_B          306 -LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGS-----------------YNNFFR  367 (447)
T ss_dssp             -SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEEC-----------------STTEEE
T ss_pred             -CeEEEEeCCCCccccceeeccccccccccccccccccccceEEEECCCCCEEEEec-----------------cCCEEE
Confidence             44555553 2 4  333321100  0        0000122399999998766632                 347888


Q ss_pred             EEcCCCCeeEEeecc---------------------------------ccCcceEEEccCCCEEEEEec
Q 030700          136 KYDPSTNQTSLVLDG---------------------------------LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       136 ~~d~~~~~~~~~~~~---------------------------------~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .||..+++...+...                                 ......++|+|+++.|.++.+
T Consensus       368 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~  436 (447)
T 3dw8_B          368 MFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSLDFNKKILHTAWHPKENIIAVATT  436 (447)
T ss_dssp             EEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGCCTTSCCCEEEECSSSSEEEEECS
T ss_pred             EEEcCCCcceeeeecccccccccccCCccccccCCcccccccccccccCCceeEEEECCCCCEEEEEec
Confidence            888877665332211                                 012346999999998887654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.36  E-value=6.6e-06  Score=61.27  Aligned_cols=133  Identities=12%  Similarity=0.009  Sum_probs=77.2

Q ss_pred             EcCCCCEEE-EcCCCeEEEEcCC-CcEEEeccccCccccceEEcc---CCcEEEEEeCCCeEEEEcc-CC--cEEEE-ec
Q 030700           17 VDGNGVLYT-ATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTK---ENNVIIVCDSQQGLLKVSE-EG--VTVLV-SQ   87 (173)
Q Consensus        17 ~~~~g~l~~-~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~---~g~l~~v~~~~~~i~~~~~-~g--~~~~~-~~   87 (173)
                      +++++.+++ +..++.|..|+.. ++............ .+++++   ++++++++.....+..++. .+  ...+. ..
T Consensus       176 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~  254 (357)
T 3i2n_A          176 YNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVC-SLEFDRKDISMNKLVATSLEGKFHVFDMRTQHPTKGFASVS  254 (357)
T ss_dssp             CC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEESCSSSSCCEEEEEESTTEEEEEEEEEEETTTEEEEEE
T ss_pred             cCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceE-EEEcCCCCCCCCEEEEECCCCeEEEEeCcCCCcccceeeec
Confidence            567886665 4478899999964 44433333445667 999998   8888566655555555552 33  22221 00


Q ss_pred             cCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--------------------eEE
Q 030700           88 FNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--------------------TSL  146 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--------------------~~~  146 (173)
                      ..+. ......++++|+|. ++++-.                 .++.|..+|..++.                    +..
T Consensus       255 ~~~~-~~~v~~~~~~~~~~~~l~~~~-----------------~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~  316 (357)
T 3i2n_A          255 EKAH-KSTVWQVRHLPQNRELFLTAG-----------------GAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQN  316 (357)
T ss_dssp             EECC-SSCEEEEEEETTEEEEEEEEE-----------------TTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEE
T ss_pred             cCCC-cCCEEEEEECCCCCcEEEEEe-----------------CCCcEEEeecCCCcccccccCCCCccccccccceeec
Confidence            0011 13567899999997 555522                 23566666654321                    111


Q ss_pred             eeccccCcceEEEccCCCEEEE
Q 030700          147 VLDGLYFANGVALSEDERFLVV  168 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~dg~~lyv  168 (173)
                      +.........++|+|+++.|++
T Consensus       317 ~~~~~~~v~~~~~s~~~~~l~~  338 (357)
T 3i2n_A          317 VTLSTQPISSLDWSPDKRGLCV  338 (357)
T ss_dssp             EECCSSCEEEEEECSSSTTEEE
T ss_pred             cccCCCCeeEEEEcCCCCeEEE
Confidence            2222345578999999998875

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=98.35  E-value=0.00012  Score=55.20  Aligned_cols=136  Identities=18%  Similarity=0.220  Sum_probs=85.2

Q ss_pred             cceEEEcCCCC-EEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEcc--CCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           12 PEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~--~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      ..++++.+++. |+.+..++.|..||. +++.. .+........ .+++++  +|++++.+.....+..++. .+  ...
T Consensus       157 v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~-~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~  235 (354)
T 2pbi_B          157 LSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVL-CLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQA  235 (354)
T ss_dssp             EEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEE-EEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeE-EEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEE
Confidence            45788888875 555558899999995 45543 3333344455 777765  5677455544444555553 45  333


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---ccCcceEEEc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---LYFANGVALS  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~p~gi~~~  160 (173)
                      +. ...    ...+.++++|+|.++++-.                 .++.|..+|..+++.......   ......++|+
T Consensus       236 ~~-~h~----~~v~~v~~~p~~~~l~s~s-----------------~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s  293 (354)
T 2pbi_B          236 FE-THE----SDVNSVRYYPSGDAFASGS-----------------DDATCRLYDLRADREVAIYSKESIIFGASSVDFS  293 (354)
T ss_dssp             EC-CCS----SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC
T ss_pred             ec-CCC----CCeEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCcEEEEEcCCCcccceeEEEEe
Confidence            31 111    3567899999998777632                 347888888876654333322   1235689999


Q ss_pred             cCCCEEEEEe
Q 030700          161 EDERFLVVCE  170 (173)
Q Consensus       161 ~dg~~lyv~~  170 (173)
                      |++++|+++.
T Consensus       294 ~~g~~l~~g~  303 (354)
T 2pbi_B          294 LSGRLLFAGY  303 (354)
T ss_dssp             TTSSEEEEEE
T ss_pred             CCCCEEEEEE
Confidence            9999887754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.35  E-value=7.5e-05  Score=61.36  Aligned_cols=142  Identities=14%  Similarity=0.128  Sum_probs=89.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~   84 (173)
                      ....+++++|+|.++++. .++.|..||. ++... .+..+..... .+++++++++++.+.....+...+..+  ...+
T Consensus       431 ~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~  509 (694)
T 3dm0_A          431 HFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVL-SVAFSLDNRQIVSASRDRTIKLWNTLGECKYTI  509 (694)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEE-EEEECTTSSCEEEEETTSCEEEECTTSCEEEEE
T ss_pred             CcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEECCCCcceee
Confidence            345679999998766554 8899999995 44433 3334455567 999999998844444333344444444  2222


Q ss_pred             EeccCCccccCCccEEEcCCC--cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEcc
Q 030700           85 VSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE  161 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~  161 (173)
                      .....+. ......++++|++  .++++.                 ..++.|..+|..+++......+ ....+.++|+|
T Consensus       510 ~~~~~~h-~~~v~~~~~~~~~~~~~l~s~-----------------s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~sp  571 (694)
T 3dm0_A          510 SEGGEGH-RDWVSCVRFSPNTLQPTIVSA-----------------SWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSP  571 (694)
T ss_dssp             CSSTTSC-SSCEEEEEECSCSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECT
T ss_pred             ccCCCCC-CCcEEEEEEeCCCCcceEEEE-----------------eCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeC
Confidence            2211111 1346778999987  344442                 2347888899887765544443 45567899999


Q ss_pred             CCCEEEEEe
Q 030700          162 DERFLVVCE  170 (173)
Q Consensus       162 dg~~lyv~~  170 (173)
                      +++.|..+.
T Consensus       572 dg~~l~sg~  580 (694)
T 3dm0_A          572 DGSLCASGG  580 (694)
T ss_dssp             TSSEEEEEE
T ss_pred             CCCEEEEEe
Confidence            999776653

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=98.35  E-value=4e-05  Score=58.03  Aligned_cols=142  Identities=14%  Similarity=0.064  Sum_probs=88.8

Q ss_pred             CCcceEEEcCC----C---CEEEE-cCCCeEEEEcC-CCc------EEEeccc-----cCccccceEEc----cCCcE-E
Q 030700           10 NHPEDVSVDGN----G---VLYTA-TGDGWIKRMHP-NGT------WEDWHQV-----GSQSLLGLTTT----KENNV-I   64 (173)
Q Consensus        10 ~~p~~l~~~~~----g---~l~~~-~~~~~i~~~~~-~g~------~~~~~~~-----~~~p~~gl~~~----~~g~l-~   64 (173)
                      ....++++.++    |   .++++ ..++.|..|+. +++      +..+...     ..... .++++    +++++ +
T Consensus        63 ~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~~~~~l  141 (397)
T 1sq9_A           63 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFW-ALKWGASNDRLLSHRL  141 (397)
T ss_dssp             TCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEE-EEEEECCC----CEEE
T ss_pred             CcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEE-EEEEeeccCCCCceEE
Confidence            34578899988    8   66654 47888888874 333      4444333     25567 99999    99987 6


Q ss_pred             EEEeCCCeEEEEc-cC------C--cE-----EEEec--cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeeccc
Q 030700           65 IVCDSQQGLLKVS-EE------G--VT-----VLVSQ--FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSG  128 (173)
Q Consensus        65 ~v~~~~~~i~~~~-~~------g--~~-----~~~~~--~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~  128 (173)
                      +++.....+..++ ..      +  ..     .+...  ........+..++++|+| ++++..                
T Consensus       142 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~----------------  204 (397)
T 1sq9_A          142 VATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGF----------------  204 (397)
T ss_dssp             EEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEEC----------------
T ss_pred             EEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEe----------------
Confidence            7776555555555 24      3  33     33210  001112457889999999 666532                


Q ss_pred             CCCceEEEEcCCCCeeEEeecc-------ccCcceEEEccCCCEEEEEe
Q 030700          129 EPHGVLLKYDPSTNQTSLVLDG-------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       129 ~~~~~v~~~d~~~~~~~~~~~~-------~~~p~gi~~~~dg~~lyv~~  170 (173)
                       .++.|..+|..+++.......       ......++|+|++++|+++.
T Consensus       205 -~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~  252 (397)
T 1sq9_A          205 -NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAH  252 (397)
T ss_dssp             -TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEE
T ss_pred             -CCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEe
Confidence             347899999887765544443       45567899999999887754

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=98.34  E-value=1.5e-05  Score=65.51  Aligned_cols=156  Identities=9%  Similarity=-0.011  Sum_probs=85.4

Q ss_pred             CcceEEEcCCCC-EEEEcC---------CCeEEEEcCC-CcEEEeccccC---ccccceEEccCCcEEEEEeCCCeEEEE
Q 030700           11 HPEDVSVDGNGV-LYTATG---------DGWIKRMHPN-GTWEDWHQVGS---QSLLGLTTTKENNVIIVCDSQQGLLKV   76 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~~---------~~~i~~~~~~-g~~~~~~~~~~---~p~~gl~~~~~g~l~~v~~~~~~i~~~   76 (173)
                      ...+++++|+|+ |.++..         .+.|+.++.+ |+...+.....   ... .++|+|||+.++++.. ..++.+
T Consensus        62 ~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~-~~~~SPdG~~la~~~~-~~i~~~  139 (723)
T 1xfd_A           62 RAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQ-YAGWGPKGQQLIFIFE-NNIYYC  139 (723)
T ss_dssp             TCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCS-BCCBCSSTTCEEEEET-TEEEEE
T ss_pred             ccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCcccccccc-ccEECCCCCEEEEEEC-CeEEEE
Confidence            378899999997 444432         2678888864 44433332222   256 7899999976454443 568888


Q ss_pred             cc-CC-cEEEEeccCCcc--------------ccCCccEEEcCCCc-EEEEeCcCCcCcccc------------eee-ec
Q 030700           77 SE-EG-VTVLVSQFNGSQ--------------LRFANDVIEASDGS-LYFTVSSTKFTPAEY------------YLD-LV  126 (173)
Q Consensus        77 ~~-~g-~~~~~~~~~~~~--------------~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~------------~~~-~~  126 (173)
                      +. .| ...+........              +.....++++|||+ |+++.... .....+            ... ..
T Consensus       140 ~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  218 (723)
T 1xfd_A          140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAIND-SRVPIMELPTYTGSIYPTVKPYHY  218 (723)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEEC-TTSCEEEECCCSSSSSCCCEEEEC
T ss_pred             ECCCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECC-CccceEEeeccCCcCCCcceeccC
Confidence            85 44 444432211100              12346799999997 44432110 000000            000 00


Q ss_pred             c----cCCCceEEEEcCCCCee-EEeecc------ccCcceEEEccCCCEEEEE
Q 030700          127 S----GEPHGVLLKYDPSTNQT-SLVLDG------LYFANGVALSEDERFLVVC  169 (173)
Q Consensus       127 ~----~~~~~~v~~~d~~~~~~-~~~~~~------~~~p~gi~~~~dg~~lyv~  169 (173)
                      .    ......|+.+|..+++. ..+...      ......++|||||+.|++.
T Consensus       219 ~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~  272 (723)
T 1xfd_A          219 PKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTW  272 (723)
T ss_dssp             CBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEE
T ss_pred             CCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEE
Confidence            0    01234899999987764 333321      1233569999999877543

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.34  E-value=6.1e-05  Score=60.19  Aligned_cols=136  Identities=13%  Similarity=0.099  Sum_probs=88.8

Q ss_pred             cceEEEcC--CCCEEEE-cCCCeEEEEcC-CC--------cEE-EeccccCccccceEEccCCcEEEEEeCCC---eEEE
Q 030700           12 PEDVSVDG--NGVLYTA-TGDGWIKRMHP-NG--------TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLLK   75 (173)
Q Consensus        12 p~~l~~~~--~g~l~~~-~~~~~i~~~~~-~g--------~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~~   75 (173)
                      ..+++++|  +|.++++ ..++.|..|+. ++        ... .+........ .+++++++++++++....   +.++
T Consensus        67 v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~~~~~~~~~~~v~  145 (615)
T 1pgu_A           67 VTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVFI  145 (615)
T ss_dssp             EEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEEE
T ss_pred             EEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEE-EEEEeCCCCEEEEeccCCCCccEEE
Confidence            68899999  9976654 47888988885 33        222 2223344567 999999999856655432   4444


Q ss_pred             EccCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-c
Q 030700           76 VSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-L  151 (173)
Q Consensus        76 ~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~  151 (173)
                      +...+  ...+. ..    ......++++|+|. ++++.                 ..++.|..+|..+++....... .
T Consensus       146 ~~d~~~~~~~~~-~~----~~~v~~~~~~~~~~~~l~~~-----------------~~d~~v~vwd~~~~~~~~~~~~~~  203 (615)
T 1pgu_A          146 SWDSGNSLGEVS-GH----SQRINACHLKQSRPMRSMTV-----------------GDDGSVVFYQGPPFKFSASDRTHH  203 (615)
T ss_dssp             ETTTCCEEEECC-SC----SSCEEEEEECSSSSCEEEEE-----------------ETTTEEEEEETTTBEEEEEECSSS
T ss_pred             EEECCCcceeee-cC----CccEEEEEECCCCCcEEEEE-----------------eCCCcEEEEeCCCcceeeeecccC
Confidence            44444  22221 11    13567899999996 55552                 1347899999887765554443 3


Q ss_pred             c---CcceEEEccC-CCEEEEEe
Q 030700          152 Y---FANGVALSED-ERFLVVCE  170 (173)
Q Consensus       152 ~---~p~gi~~~~d-g~~lyv~~  170 (173)
                      .   ....++|+|+ +++|+++.
T Consensus       204 ~~~~~v~~~~~~~~~~~~l~~~~  226 (615)
T 1pgu_A          204 KQGSFVRDVEFSPDSGEFVITVG  226 (615)
T ss_dssp             CTTCCEEEEEECSTTCCEEEEEE
T ss_pred             CCCceEEEEEECCCCCCEEEEEe
Confidence            3   4678999999 99887754

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.33  E-value=3.6e-05  Score=57.66  Aligned_cols=101  Identities=14%  Similarity=0.063  Sum_probs=64.0

Q ss_pred             CccccceEEcc--CCcEEEEEeCCCeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceee
Q 030700           49 SQSLLGLTTTK--ENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLD  124 (173)
Q Consensus        49 ~~p~~gl~~~~--~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~  124 (173)
                      .... .+++++  ++++++.+.....+..++. .+ ........   .......++++|+|.++++-             
T Consensus       126 ~~v~-~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~---~~~~i~~~~~~pdg~~lasg-------------  188 (343)
T 3lrv_A          126 NEII-YMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAK---SDVEYSSGVLHKDSLLLALY-------------  188 (343)
T ss_dssp             SCEE-EEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCC---SSCCCCEEEECTTSCEEEEE-------------
T ss_pred             CCEE-EEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecC---CCCceEEEEECCCCCEEEEE-------------
Confidence            3456 899999  9998444444444555553 44 32222111   11347889999999887762             


Q ss_pred             ecccCCCceEEEEcCCCCeeE--Eeec-cccCcceEEEccCCCEEEEEe
Q 030700          125 LVSGEPHGVLLKYDPSTNQTS--LVLD-GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       125 ~~~~~~~~~v~~~d~~~~~~~--~~~~-~~~~p~gi~~~~dg~~lyv~~  170 (173)
                          ..++.|..+|..+++..  .+.. .....+.++|+|++++|+.+.
T Consensus       189 ----~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          189 ----SPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             ----CTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             ----cCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence                23478999998877643  3332 245668899999999887654

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.33  E-value=8e-06  Score=61.02  Aligned_cols=79  Identities=15%  Similarity=0.327  Sum_probs=48.1

Q ss_pred             CCCCEEEEc--CCCeEEEEcCCCc-EEEeccccCccccceEEccCCcEEEEEeCC--------------CeEEEEccCC-
Q 030700           19 GNGVLYTAT--GDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--------------QGLLKVSEEG-   80 (173)
Q Consensus        19 ~~g~l~~~~--~~~~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~--------------~~i~~~~~~g-   80 (173)
                      .++.||++.  .+++|++++.+|. ..++.+.  .+. -|  +++|+.+|.+...              ..|++++.+| 
T Consensus        24 ~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~-~i--~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~   98 (302)
T 3s25_A           24 SDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAM-YI--NADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH   98 (302)
T ss_dssp             ETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEE-EE--EECSSEEEEEEECC------CCSSCCSEEEEEEETTSC
T ss_pred             eCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--cee-eE--EEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC
Confidence            477899987  4678999998885 3333222  234 44  4566666777542              3588888877 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCC-cEEEEe
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDG-SLYFTV  111 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~  111 (173)
                       .+.+...         .+..++++| .||+++
T Consensus        99 ~~~~l~~~---------~~~~~s~~g~~Iy~~~  122 (302)
T 3s25_A           99 GSTVLDPD---------PCIYASLIGNYIYYLH  122 (302)
T ss_dssp             CCEEEECS---------CEEEEEEETTEEEEEE
T ss_pred             cceEeecC---------CccEEEEeCCEEEEEe
Confidence             4444321         122455554 588876

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.32  E-value=9.2e-05  Score=64.43  Aligned_cols=138  Identities=14%  Similarity=0.148  Sum_probs=90.7

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      ....+++++|+|.++++. .++.|..|+. +++. ..+........ +++|+++|++++.+.....+..++. ++  ...
T Consensus       616 ~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~  694 (1249)
T 3sfz_A          616 DAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVL-CCAFSSDDSYIATCSADKKVKIWDSATGKLVHT  694 (1249)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEEE
T ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEE-EEEEecCCCEEEEEeCCCeEEEEECCCCceEEE
Confidence            456689999999766554 8889999985 4543 33444455667 9999999998555544444555553 55  333


Q ss_pred             EEeccCCccccCCccEEEcCCC--cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEc
Q 030700           84 LVSQFNGSQLRFANDVIEASDG--SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALS  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG--~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~  160 (173)
                      +.. ..    .....+++.+++  .++++.                 ..++.|..+|..+++......+ ....+.++|+
T Consensus       695 ~~~-~~----~~v~~~~~~~~~~~~~l~sg-----------------~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~s  752 (1249)
T 3sfz_A          695 YDE-HS----EQVNCCHFTNKSNHLLLATG-----------------SNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFS  752 (1249)
T ss_dssp             EEC-CS----SCEEEEEECSSSSCCEEEEE-----------------ETTSCEEEEETTSSSEEEEECCCSSCEEEEEEC
T ss_pred             EcC-CC----CcEEEEEEecCCCceEEEEE-----------------eCCCeEEEEECCCcchhheecCCCCCEEEEEEe
Confidence            321 11    356778898854  344442                 2347889999887765444433 4556789999


Q ss_pred             cCCCEEEEEe
Q 030700          161 EDERFLVVCE  170 (173)
Q Consensus       161 ~dg~~lyv~~  170 (173)
                      |+++.++.+.
T Consensus       753 p~~~~l~s~s  762 (1249)
T 3sfz_A          753 PDDELLASCS  762 (1249)
T ss_dssp             SSTTEEEEEE
T ss_pred             cCCCEEEEEE
Confidence            9999877654

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=98.32  E-value=6.7e-06  Score=62.37  Aligned_cols=137  Identities=9%  Similarity=0.033  Sum_probs=81.9

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC-cEEE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG-VTVL   84 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g-~~~~   84 (173)
                      ...++++.|+|..+++. .++.|..||.. ++.. .+........ .++++++++.++++...++.+++ +. .+ ....
T Consensus       141 ~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~-~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~  219 (357)
T 4g56_B          141 IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVN-CVAACPGKDTIFLSCGEDGRILLWDTRKPKPATR  219 (357)
T ss_dssp             CEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTCSSCEEEEETTSCEEECCTTSSSCBCB
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEE-EEEEccCCCceeeeeccCCceEEEECCCCceeee
Confidence            35789999999766544 88899999854 4433 3333345567 89999887532444444444444 43 34 1111


Q ss_pred             EeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccC
Q 030700           85 VSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSED  162 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~d  162 (173)
                      ....  .....+..++++|++ .++++-                 ..++.|..+|..+++......+ ....+.|+|+|+
T Consensus       220 ~~~~--~~~~~v~~v~~sp~~~~~la~g-----------------~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~  280 (357)
T 4g56_B          220 IDFC--ASDTIPTSVTWHPEKDDTFACG-----------------DETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYH  280 (357)
T ss_dssp             CCCT--TCCSCEEEEEECTTSTTEEEEE-----------------ESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSS
T ss_pred             eeec--cccccccchhhhhcccceEEEe-----------------ecccceeEEECCCCcEeEEEeccceeEEEEEEcCC
Confidence            1111  111346789999975 555542                 1346888889877654443333 344578999998


Q ss_pred             CCEEE
Q 030700          163 ERFLV  167 (173)
Q Consensus       163 g~~ly  167 (173)
                      ++.+.
T Consensus       281 ~~~~l  285 (357)
T 4g56_B          281 SSPFL  285 (357)
T ss_dssp             SSCCE
T ss_pred             CCCEE
Confidence            75433

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=98.30  E-value=0.00013  Score=55.81  Aligned_cols=139  Identities=10%  Similarity=-0.008  Sum_probs=89.3

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCC--Cc-EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN--GT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~--g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~   83 (173)
                      ....++++++ ..++.+..++.|..|+..  +. ...+........ ++++++++++++++.....+..++. .+  ...
T Consensus       177 ~~v~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~  254 (401)
T 4aez_A          177 ARVGCLSWNR-HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC-GLAWRSDGLQLASGGNDNVVQIWDARSSIPKFT  254 (401)
T ss_dssp             SCEEEEEEET-TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTCSSEEEE
T ss_pred             CceEEEEECC-CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCee-EEEEcCCCCEEEEEeCCCeEEEccCCCCCccEE
Confidence            3455677742 244455588889999854  33 333334455677 9999999998555554444555554 44  222


Q ss_pred             EEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      +. ..    ......++++|+| .++++...               ..++.|..+|..+++.............++|+|+
T Consensus       255 ~~-~~----~~~v~~~~~~p~~~~ll~~~~g---------------s~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~s~~  314 (401)
T 4aez_A          255 KT-NH----NAAVKAVAWCPWQSNLLATGGG---------------TMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPH  314 (401)
T ss_dssp             EC-CC----SSCCCEEEECTTSTTEEEEECC---------------TTTCEEEEEETTTCCEEEEEECSSCEEEEEECSS
T ss_pred             ec-CC----cceEEEEEECCCCCCEEEEecC---------------CCCCEEEEEECCCCCEEEEEeCCCcEEEEEECCC
Confidence            21 11    1357889999987 46665321               1347899999887776555555566789999999


Q ss_pred             CCEEEEEe
Q 030700          163 ERFLVVCE  170 (173)
Q Consensus       163 g~~lyv~~  170 (173)
                      ++.++++.
T Consensus       315 ~~~l~~~~  322 (401)
T 4aez_A          315 SKEIMSTH  322 (401)
T ss_dssp             SSEEEEEE
T ss_pred             CCeEEEEe
Confidence            99888753

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=98.29  E-value=6.3e-05  Score=57.85  Aligned_cols=138  Identities=11%  Similarity=0.100  Sum_probs=89.0

Q ss_pred             CcceEEEc---C-----CCCEEEEc-CCCeEEEEcC-CCcEEEec-----cc--------------cCccccceEEccC-
Q 030700           11 HPEDVSVD---G-----NGVLYTAT-GDGWIKRMHP-NGTWEDWH-----QV--------------GSQSLLGLTTTKE-   60 (173)
Q Consensus        11 ~p~~l~~~---~-----~g~l~~~~-~~~~i~~~~~-~g~~~~~~-----~~--------------~~~p~~gl~~~~~-   60 (173)
                      ....+++|   +     ++.+|++| ....|..+|. +|+.-++.     ..              ..... ||+++++ 
T Consensus       153 ~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~-gIaLsp~~  231 (381)
T 3q6k_A          153 YFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIF-GITLGDRD  231 (381)
T ss_dssp             GEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEE-EEEECCCC
T ss_pred             ccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCce-EEEecCCc
Confidence            45678888   2     45799999 6678888884 44322221     11              12456 9999987 


Q ss_pred             ---CcEEEEEeCCC-eEEEEc----cCC-----cEEEEeccCCccccCCccEEEc-CCCcEEEEeCcCCcCcccceeeec
Q 030700           61 ---NNVIIVCDSQQ-GLLKVS----EEG-----VTVLVSQFNGSQLRFANDVIEA-SDGSLYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        61 ---g~l~~v~~~~~-~i~~~~----~~g-----~~~~~~~~~~~~~~~~~~l~~~-~dG~~~v~~~~~~~~~~~~~~~~~  126 (173)
                         ++.||++...+ .++++.    .+.     ++.+....   +....-++++| .+|.+|+++..             
T Consensus       232 ~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg---~~s~~~~~~~D~~~G~ly~~~~~-------------  295 (381)
T 3q6k_A          232 SEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRG---KYNDAIALAYDPKTKVIFFAEAN-------------  295 (381)
T ss_dssp             TTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECC---TTCCEEEEEECTTTCEEEEEESS-------------
T ss_pred             CCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecC---CCCCcceEEEeCCCCeEEEEecc-------------
Confidence               78889987654 688875    122     33333221   11122356786 78999999743             


Q ss_pred             ccCCCceEEEEcCCC-----CeeEEeec--cccCcceEEEccCCCEEEEEe
Q 030700          127 SGEPHGVLLKYDPST-----NQTSLVLD--GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~-----~~~~~~~~--~~~~p~gi~~~~dg~~lyv~~  170 (173)
                          .+.|.++++++     .....+..  .+.+|.+|.++++|. ||+..
T Consensus       296 ----~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~-Lwv~s  341 (381)
T 3q6k_A          296 ----TKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGG-LWFMS  341 (381)
T ss_dssp             ----SSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSC-EEEEE
T ss_pred             ----CCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCe-EEEEE
Confidence                36899999985     23344443  478999999998885 88754

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=98.28  E-value=8e-05  Score=61.19  Aligned_cols=139  Identities=14%  Similarity=0.140  Sum_probs=87.3

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcCCCcEE-Eecc----ccCccccceEEccCC--cEEEEEeCCCeEEEEcc-CC
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHPNGTWE-DWHQ----VGSQSLLGLTTTKEN--NVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~g~~~-~~~~----~~~~p~~gl~~~~~g--~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ....+++++|++..+ .+..++.|..|+..+... .+..    ...... ++++++++  .+++.+.....|...+. ++
T Consensus       473 ~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~  551 (694)
T 3dm0_A          473 KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVS-CVRFSPNTLQPTIVSASWDKTVKVWNLSNC  551 (694)
T ss_dssp             SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEE-EEEECSCSSSCEEEEEETTSCEEEEETTTC
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEE-EEEEeCCCCcceEEEEeCCCeEEEEECCCC
Confidence            446789999988644 455889999998765432 2211    223356 88999876  45344443444444453 34


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVAL  159 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~  159 (173)
                       .........    .....++++|+|+++++..                 .++.|..+|..+++...........+.++|
T Consensus       552 ~~~~~~~~h~----~~v~~v~~spdg~~l~sg~-----------------~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~  610 (694)
T 3dm0_A          552 KLRSTLAGHT----GYVSTVAVSPDGSLCASGG-----------------KDGVVLLWDLAEGKKLYSLEANSVIHALCF  610 (694)
T ss_dssp             CEEEEECCCS----SCEEEEEECTTSSEEEEEE-----------------TTSBCEEEETTTTEEEECCBCSSCEEEEEE
T ss_pred             cEEEEEcCCC----CCEEEEEEeCCCCEEEEEe-----------------CCCeEEEEECCCCceEEEecCCCcEEEEEE
Confidence             222222111    3567899999999877632                 347888899887765444444455678999


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +|++..|..+.
T Consensus       611 sp~~~~l~~~~  621 (694)
T 3dm0_A          611 SPNRYWLCAAT  621 (694)
T ss_dssp             CSSSSEEEEEE
T ss_pred             cCCCcEEEEEc
Confidence            99998776543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=98.28  E-value=0.00013  Score=54.47  Aligned_cols=142  Identities=15%  Similarity=0.114  Sum_probs=85.8

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC---cEE-EeccccCccccceEEccC--CcEEEEEeCCCeEEEEcc-CC
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG---TWE-DWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g---~~~-~~~~~~~~p~~gl~~~~~--g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      -....+++++|+|.++++. .++.|..|+.++   +.. .+........ .++++++  +++|+.+.....+..++. .+
T Consensus        11 ~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~   89 (379)
T 3jrp_A           11 NELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIWKEENG   89 (379)
T ss_dssp             CCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEE-EEEECCGGGCSEEEEEETTSCEEEEEEETT
T ss_pred             cccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEE-EEEeCCCCCCCEEEEeccCCEEEEEEcCCC
Confidence            3557789999998766554 788898888542   222 2223344566 8999866  888565554444555553 44


Q ss_pred             -cEEEEeccCCccccCCccEEEcCC--CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe---eEEeeccccCc
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ---TSLVLDGLYFA  154 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~d--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~~~p  154 (173)
                       ........ +. ......++++|+  |.++++-.                 .++.|..+|..++.   ...+.......
T Consensus        90 ~~~~~~~~~-~~-~~~v~~~~~~~~~~~~~l~~~~-----------------~d~~i~v~d~~~~~~~~~~~~~~~~~~v  150 (379)
T 3jrp_A           90 RWSQIAVHA-VH-SASVNSVQWAPHEYGPLLLVAS-----------------SDGKVSVVEFKENGTTSPIIIDAHAIGV  150 (379)
T ss_dssp             EEEEEEEEC-CC-SSCEEEEEECCGGGCSEEEEEE-----------------TTSEEEEEECCTTSCCCEEEEECCTTCE
T ss_pred             ceeEeeeec-CC-CcceEEEEeCCCCCCCEEEEec-----------------CCCcEEEEecCCCCceeeEEecCCCCce
Confidence             22222211 11 135688999998  87666521                 34688888877552   22222334456


Q ss_pred             ceEEEcc-------------CCCEEEEEe
Q 030700          155 NGVALSE-------------DERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~-------------dg~~lyv~~  170 (173)
                      ..++|+|             +++.++++.
T Consensus       151 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  179 (379)
T 3jrp_A          151 NSASWAPATIEEDGEHNGTKESRKFVTGG  179 (379)
T ss_dssp             EEEEECCCC----------CTTCEEEEEE
T ss_pred             EEEEEcCccccccccccCCCCCCEEEEEe
Confidence            7899998             677776653

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=98.28  E-value=8.2e-05  Score=55.25  Aligned_cols=142  Identities=8%  Similarity=-0.055  Sum_probs=85.2

Q ss_pred             CCcceEEEcCC---CC-EEEEcCCCeEEEEcCC-Cc--EEEeccccCccccce------EEccCCcEEEEEeCCCeEEEE
Q 030700           10 NHPEDVSVDGN---GV-LYTATGDGWIKRMHPN-GT--WEDWHQVGSQSLLGL------TTTKENNVIIVCDSQQGLLKV   76 (173)
Q Consensus        10 ~~p~~l~~~~~---g~-l~~~~~~~~i~~~~~~-g~--~~~~~~~~~~p~~gl------~~~~~g~l~~v~~~~~~i~~~   76 (173)
                      ....++++.|+   |. |+++..++.|..|+.. ++  ...+........ .+      ++++++++++.+.....+..+
T Consensus        66 ~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~s~~~~~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           66 KPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIIN-AIDGIGGLGIGEGAPEIVTGSRDGTVKVW  144 (357)
T ss_dssp             SCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEE-EEEEESGGGCC-CCCEEEEEETTSCEEEE
T ss_pred             CcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceE-EEeeccccccCCCccEEEEEeCCCeEEEE
Confidence            34578899987   55 5555688999999853 33  333333333444 55      457888885555544445555


Q ss_pred             cc-CC---cEEEEeccCCccccCCccEE----EcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           77 SE-EG---VTVLVSQFNGSQLRFANDVI----EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        77 ~~-~g---~~~~~~~~~~~~~~~~~~l~----~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      +. .+   ...+ ....+........++    +++++.++++..                 .++.|..+|..+++.....
T Consensus       145 d~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~d~~~~~~~~~~  206 (357)
T 3i2n_A          145 DPRQKDDPVANM-EPVQGENKRDCWTVAFGNAYNQEERVVCAGY-----------------DNGDIKLFDLRNMALRWET  206 (357)
T ss_dssp             CTTSCSSCSEEE-CCCTTSCCCCEEEEEEECCCC-CCCEEEEEE-----------------TTSEEEEEETTTTEEEEEE
T ss_pred             eCCCCCCcceec-cccCCCCCCceEEEEEEeccCCCCCEEEEEc-----------------cCCeEEEEECccCceeeec
Confidence            53 33   2332 222221112345555    668888666521                 3478999999888765554


Q ss_pred             ccccCcceEEEcc---CCCEEEEEe
Q 030700          149 DGLYFANGVALSE---DERFLVVCE  170 (173)
Q Consensus       149 ~~~~~p~gi~~~~---dg~~lyv~~  170 (173)
                      ........++|+|   +++.++++.
T Consensus       207 ~~~~~v~~~~~~~~~~~~~~l~~~~  231 (357)
T 3i2n_A          207 NIKNGVCSLEFDRKDISMNKLVATS  231 (357)
T ss_dssp             ECSSCEEEEEESCSSSSCCEEEEEE
T ss_pred             CCCCceEEEEcCCCCCCCCEEEEEC
Confidence            4456678899999   888887764

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=98.28  E-value=3e-05  Score=57.90  Aligned_cols=124  Identities=9%  Similarity=0.108  Sum_probs=79.1

Q ss_pred             EEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC--CeEEEEccCC--cEEEEeccC
Q 030700           16 SVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ--QGLLKVSEEG--VTVLVSQFN   89 (173)
Q Consensus        16 ~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~--~~i~~~~~~g--~~~~~~~~~   89 (173)
                      ++++ ++.||+++ ....|++.+.+|.-.+....  .+. ...++|+++.+|+++..  ..|.+++.+|  .+.+...  
T Consensus       151 ~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~-~~~~~P~g~~iy~t~~~~~~~I~~~~ldG~~~~~Lt~~--  225 (302)
T 3s25_A          151 TCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNC-YKPVVLDDTNVYYMDVNRDNAIVHVNINNPNPVVLTEA--  225 (302)
T ss_dssp             CSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCE-EEEEEEETTEEEEEEGGGTTEEEEECSSSCCCEECSCS--
T ss_pred             EeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCc-cceeeecCCEEEEEEcCCCcEEEEEECCCCCeEEEeCC--
Confidence            3455 45899888 46789999988764332222  233 34466777777988765  3699999888  4444321  


Q ss_pred             CccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEE
Q 030700           90 GSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (173)
Q Consensus        90 ~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv  168 (173)
                        .  .   ..++|+| .||+++..                ....|++++.++...+.+..+    +...+++.+++||+
T Consensus       226 --~--~---~~~~~~g~~Iy~~~~~----------------~~~~i~~~~~DG~~r~~l~~~----~~~~i~i~~d~Iy~  278 (302)
T 3s25_A          226 --N--I---EHYNVYGSLIFYQRGG----------------DNPALCVVKNDGTGFKELAKG----EFCNINVTSQYVYF  278 (302)
T ss_dssp             --C--E---EEEEEETTEEEEEECS----------------SSCEEEEEETTSCCCEEEEES----CEEEEEECSSEEEE
T ss_pred             --C--c---ceEEECCCEEEEEECC----------------CCcEEEEEECCCCccEEeeCC----ccceEEEeCCEEEE
Confidence              1  1   3377776 58887432                125899999996655555543    23356667889999


Q ss_pred             Eec
Q 030700          169 CES  171 (173)
Q Consensus       169 ~~~  171 (173)
                      ++.
T Consensus       279 td~  281 (302)
T 3s25_A          279 TDF  281 (302)
T ss_dssp             EET
T ss_pred             EEC
Confidence            983

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=98.27  E-value=1.8e-05  Score=59.38  Aligned_cols=136  Identities=9%  Similarity=-0.012  Sum_probs=82.8

Q ss_pred             CcceEEEcC--CCCEEEEc-CCCeEEEEcC-CCcEEEec-cc-cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--c
Q 030700           11 HPEDVSVDG--NGVLYTAT-GDGWIKRMHP-NGTWEDWH-QV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--V   81 (173)
Q Consensus        11 ~p~~l~~~~--~g~l~~~~-~~~~i~~~~~-~g~~~~~~-~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~   81 (173)
                      ...+++++|  ++.++++. .++.|..||. +++..... .. ..... .++++++|+++..+.....|..++. ++  .
T Consensus       127 ~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~-~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          127 EIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYS-SGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             CEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCC-EEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceE-EEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            467899999  88877644 8899999985 45543322 22 23466 9999999999444443344555553 44  2


Q ss_pred             -EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc---cCc---
Q 030700           82 -TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL---YFA---  154 (173)
Q Consensus        82 -~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~---~~p---  154 (173)
                       ..+....    ......++++|+|.++++..                  ++.|..+|..+++.......+   ..+   
T Consensus       206 ~~~~~~~h----~~~v~~l~fs~~g~~l~s~~------------------~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~  263 (343)
T 3lrv_A          206 SSRFPVDE----EAKIKEVKFADNGYWMVVEC------------------DQTVVCFDLRKDVGTLAYPTYTIPEFKTGT  263 (343)
T ss_dssp             CEECCCCT----TSCEEEEEECTTSSEEEEEE------------------SSBEEEEETTSSTTCBSSCCCBC-----CC
T ss_pred             ccEEeccC----CCCEEEEEEeCCCCEEEEEe------------------CCeEEEEEcCCCCcceeecccccccccccc
Confidence             2332101    13578899999998766632                  247888888765432111110   112   


Q ss_pred             ceEEEccCCCEEEEE
Q 030700          155 NGVALSEDERFLVVC  169 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~  169 (173)
                      ..++|+|++++|.++
T Consensus       264 ~~~~~~~~g~~l~~~  278 (343)
T 3lrv_A          264 VTYDIDDSGKNMIAY  278 (343)
T ss_dssp             EEEEECTTSSEEEEE
T ss_pred             eEEEECCCCCEEEEe
Confidence            249999999988874

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.27  E-value=0.00022  Score=52.32  Aligned_cols=106  Identities=17%  Similarity=0.121  Sum_probs=61.0

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEE-cCCCeEEEEcCCCc-----EE-EeccccCccccceEEcc--CCcEEEEEeCCCe
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTA-TGDGWIKRMHPNGT-----WE-DWHQVGSQSLLGLTTTK--ENNVIIVCDSQQG   72 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~-~~~~~i~~~~~~g~-----~~-~~~~~~~~p~~gl~~~~--~g~l~~v~~~~~~   72 (173)
                      .++..+--....+++++|+|.++++ ..++.|..|+.+..     .. .+........ .++|++  ++++|+.+.....
T Consensus         4 ~~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~d~~~l~s~~~dg~   82 (351)
T 3f3f_A            4 QPFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIV-AIDWASPEYGRIIASASYDKT   82 (351)
T ss_dssp             CCEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEE-EEEECCGGGCSEEEEEETTSC
T ss_pred             cccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEE-EEEEcCCCCCCEEEEEcCCCe
Confidence            3445555567889999999876554 47888888885321     22 2223344566 999998  5888455544444


Q ss_pred             EEEEcc-CC-c-------EEEEeccCCccccCCccEEEcCC--CcEEEE
Q 030700           73 LLKVSE-EG-V-------TVLVSQFNGSQLRFANDVIEASD--GSLYFT  110 (173)
Q Consensus        73 i~~~~~-~g-~-------~~~~~~~~~~~~~~~~~l~~~~d--G~~~v~  110 (173)
                      +..++. .+ .       ..+.. ..+. ......++++|+  |.++++
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~-~~~~-~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCT-LNDS-KGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEE-ECCC-SSCEEEEEECCGGGCSEEEE
T ss_pred             EEEEecCCCcccccccCcceeee-eccc-CCceeEEEEcCCCCCcEEEE
Confidence            444442 22 1       22222 1111 134567888887  765544

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=98.26  E-value=2e-05  Score=65.35  Aligned_cols=132  Identities=7%  Similarity=-0.073  Sum_probs=80.0

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccC------ccccceEEccCCcEEEEEeCC---------CeEEE
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGS------QSLLGLTTTKENNVIIVCDSQ---------QGLLK   75 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~------~p~~gl~~~~~g~l~~v~~~~---------~~i~~   75 (173)
                      -.+++|.|+|.+++++ ++.|+.++. +|+...+.....      ... .++++|||+.++++...         ..++.
T Consensus        19 ~~~~~w~~dg~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~   96 (740)
T 4a5s_A           19 LYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (740)
T ss_dssp             CCCEEECSSSEEEEEE-TTEEEEEETTTCCEEEEECTTTTTTCCSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccccEECCCCcEEEEc-CCcEEEEECCCCceEEEEechhhhhhccccc-ceEECCCCCEEEEEECCeeeEEEccceEEEE
Confidence            4578999999777666 789999995 455444322111      123 47889999875554321         12445


Q ss_pred             Ecc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc-
Q 030700           76 VSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-  151 (173)
Q Consensus        76 ~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-  151 (173)
                      ++. .| ...+.. ..    ......+++|||+ |.++.                   ++.|+.++..+++...+.... 
T Consensus        97 ~d~~~~~~~~l~~-~~----~~~~~~~~SPdG~~la~~~-------------------~~~i~~~~~~~~~~~~lt~~g~  152 (740)
T 4a5s_A           97 YDLNKRQLITEER-IP----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWTGK  152 (740)
T ss_dssp             EETTTTEECCSSC-CC----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSCCB
T ss_pred             EECCCCcEEEccc-CC----CcceeeEECCCCCEEEEEE-------------------CCeEEEEECCCCceEEEcCCCC
Confidence            554 34 322211 11    2356789999996 54442                   147888888777665543211 


Q ss_pred             ------------------cCcceEEEccCCCEEEEE
Q 030700          152 ------------------YFANGVALSEDERFLVVC  169 (173)
Q Consensus       152 ------------------~~p~gi~~~~dg~~lyv~  169 (173)
                                        ....+++|||||+.|..+
T Consensus       153 ~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~  188 (740)
T 4a5s_A          153 EDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYA  188 (740)
T ss_dssp             TTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEE
T ss_pred             ccceecCcccccccchhcCCCcceEECCCCCEEEEE
Confidence                              222458999999987765

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=98.26  E-value=0.00014  Score=58.12  Aligned_cols=138  Identities=11%  Similarity=0.062  Sum_probs=85.3

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC-CCeEEEEccCC-cEEEEec
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-QQGLLKVSEEG-VTVLVSQ   87 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~~~i~~~~~~g-~~~~~~~   87 (173)
                      .|..+++.|+|.+.+....+.+..++. +++..........+. .++++  +++++++.. ...+..++... .... ..
T Consensus       408 ~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~-~~  483 (615)
T 1pgu_A          408 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGS-AVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF-DL  483 (615)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEE-EEEEC--SSEEEEEETTTSCEEEEETTEEEEEE-EC
T ss_pred             CceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecccCCCce-EEEEc--CCEEEEeecCCCeEEEEECCCccccc-cc
Confidence            456666666666555545556666653 455443334455677 88888  667466655 44455555433 2111 22


Q ss_pred             cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccCcceEEEcc----
Q 030700           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSE----  161 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~p~gi~~~~----  161 (173)
                      ..+ ....+..++++|+|+++++-.                 .++.|..+|..+++......  .....+.++|+|    
T Consensus       484 ~~~-~~~~v~~~~~s~~g~~l~~~~-----------------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~  545 (615)
T 1pgu_A          484 KTP-LRAKPSYISISPSETYIAAGD-----------------VMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKG  545 (615)
T ss_dssp             SSC-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC--
T ss_pred             cCC-ccCceEEEEECCCCCEEEEcC-----------------CCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccc
Confidence            221 124578899999998776632                 34789999998777654443  345568899999    


Q ss_pred             ------CCCEEEEEe
Q 030700          162 ------DERFLVVCE  170 (173)
Q Consensus       162 ------dg~~lyv~~  170 (173)
                            ++++|+++.
T Consensus       546 ~~~~~~~~~~l~~~~  560 (615)
T 1pgu_A          546 ANEEEIEEDLVATGS  560 (615)
T ss_dssp             ----CCSCCEEEEEE
T ss_pred             ccccccCCCEEEEEc
Confidence                  999887764

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=98.25  E-value=4.9e-05  Score=57.85  Aligned_cols=140  Identities=8%  Similarity=0.057  Sum_probs=86.0

Q ss_pred             CCcceEEEcCC-CCEEEE-cCCCeEEEEcCC-CcEEE-eccc------cCccccceEEccCC-cEEEEEeCCC---eEEE
Q 030700           10 NHPEDVSVDGN-GVLYTA-TGDGWIKRMHPN-GTWED-WHQV------GSQSLLGLTTTKEN-NVIIVCDSQQ---GLLK   75 (173)
Q Consensus        10 ~~p~~l~~~~~-g~l~~~-~~~~~i~~~~~~-g~~~~-~~~~------~~~p~~gl~~~~~g-~l~~v~~~~~---~i~~   75 (173)
                      ....++++.|+ +.++++ ..++.|..|+.. ++... +...      ..... .+++++++ ++++.+....   .+..
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~~~~i~~  244 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLS-VVEWHPKNSTRVATATGSDNDPSILI  244 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEE-EEEECSSCTTEEEEEECCSSSCCCCE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceE-EEEECCCCCCEEEEEECCCCCceEEE
Confidence            45678999997 666655 478889999964 44332 2222      34466 99999997 5634444333   4555


Q ss_pred             Ecc-CCcEEEEeccC-CccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cc
Q 030700           76 VSE-EGVTVLVSQFN-GSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GL  151 (173)
Q Consensus        76 ~~~-~g~~~~~~~~~-~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~  151 (173)
                      ++. .+...+. ... +. ...+..++++| +|.++++..                 .++.|..+|..+++...... ..
T Consensus       245 ~d~~~~~~~~~-~~~~~~-~~~v~~~~~s~~~~~~l~s~~-----------------~dg~v~~wd~~~~~~~~~~~~~~  305 (416)
T 2pm9_A          245 WDLRNANTPLQ-TLNQGH-QKGILSLDWCHQDEHLLLSSG-----------------RDNTVLLWNPESAEQLSQFPARG  305 (416)
T ss_dssp             EETTSTTSCSB-CCCSCC-SSCEEEEEECSSCSSCEEEEE-----------------SSSEEEEECSSSCCEEEEEECSS
T ss_pred             EeCCCCCCCcE-EeecCc-cCceeEEEeCCCCCCeEEEEe-----------------CCCCEEEeeCCCCccceeecCCC
Confidence            553 3211111 111 11 13567899999 887666532                 34789999988776544333 34


Q ss_pred             cCcceEEEccCC-CEEEEE
Q 030700          152 YFANGVALSEDE-RFLVVC  169 (173)
Q Consensus       152 ~~p~gi~~~~dg-~~lyv~  169 (173)
                      .....++|+|++ +.|+.+
T Consensus       306 ~~v~~~~~s~~~~~~l~s~  324 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACA  324 (416)
T ss_dssp             SCCCCEEECTTCTTEEEEC
T ss_pred             CceEEEEECCCCCCEEEEE
Confidence            556789999998 555543

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.23  E-value=0.00017  Score=53.87  Aligned_cols=139  Identities=11%  Similarity=0.032  Sum_probs=78.5

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCC--------cEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG--------TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g--------~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      ....+++|.|++.++++. .++.|..|+...        +.. .+........ .++|+++|++|+.+.....+...+. 
T Consensus        59 ~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~sp~g~~las~s~D~~v~iwd~~  137 (330)
T 2hes_X           59 KAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVK-GVAWSNDGYYLATCSRDKSVWIWETD  137 (330)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEE-EEEECTTSCEEEEEETTSCEEEEECC
T ss_pred             CCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEE-EEEECCCCCEEEEEeCCCEEEEEecc
Confidence            346789999999766555 788888887532        111 2223344566 9999999998454444444444443 


Q ss_pred             C-C--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--eEEeec-ccc
Q 030700           79 E-G--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLVLD-GLY  152 (173)
Q Consensus        79 ~-g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~~~-~~~  152 (173)
                      . +  .+.+. .+.+. ......++++|+|.++++..                 .++.|..+|..++.  ...... ...
T Consensus       138 ~~~~~~~~~~-~~~~h-~~~v~~v~~~p~~~~l~s~s-----------------~D~~i~iW~~~~~~~~~~~~~~~h~~  198 (330)
T 2hes_X          138 ESGEEYECIS-VLQEH-SQDVKHVIWHPSEALLASSS-----------------YDDTVRIWKDYDDDWECVAVLNGHEG  198 (330)
T ss_dssp             TTCCCCEEEE-EECCC-SSCEEEEEECSSSSEEEEEE-----------------TTSCEEEEEEETTEEEEEEEECCCSS
T ss_pred             CCCCCeEEEE-EeccC-CCceEEEEECCCCCEEEEEc-----------------CCCeEEEEECCCCCeeEEEEccCCCC
Confidence            2 2  22221 12211 13567899999998777632                 23566666654442  222222 234


Q ss_pred             CcceEEEccC--CCEEEE
Q 030700          153 FANGVALSED--ERFLVV  168 (173)
Q Consensus       153 ~p~gi~~~~d--g~~lyv  168 (173)
                      ....++|+|+  +..|..
T Consensus       199 ~v~~~~~~~~~~~~~l~s  216 (330)
T 2hes_X          199 TVWSSDFDKTEGVFRLCS  216 (330)
T ss_dssp             CEEEEEECCSSSSCEEEE
T ss_pred             cEEEEEecCCCCeeEEEE
Confidence            4567888887  444443

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=98.23  E-value=1.7e-05  Score=62.73  Aligned_cols=59  Identities=19%  Similarity=0.220  Sum_probs=40.9

Q ss_pred             CCcceEEEcCCCCEEEEcC------------------CCeEEEEcCCCc---------------------EEEeccccCc
Q 030700           10 NHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGT---------------------WEDWHQVGSQ   50 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~------------------~~~i~~~~~~g~---------------------~~~~~~~~~~   50 (173)
                      .....|+|+|+|.||++..                  .|+|+|++++|.                     .+.+.-....
T Consensus       139 H~g~~l~fgpDG~LYv~~Gd~~~~~~~~~~~q~~~~~~GkIlRi~~dg~~~~~~y~iP~dNPf~~~~~~~~eI~a~G~RN  218 (463)
T 2wg3_C          139 HLGGQLLFGPDGFLYIILGDGMITLDDMEEMDGLSDFTGSVLRLDVDTDMCNVPYSIPRSNPHFNSTNQPPEVFAHGLHD  218 (463)
T ss_dssp             SCEEEEEECTTSCEEEEECCTTCCHHHHHHCTTCCSCTTEEEEEBCCCCCSSCSCBCCTTSTTTTCSSSCTTEEEECCSS
T ss_pred             ccCCcEeECCCCcEEEEeCCCCCCCCccccccCcCCCCeeEEEEECCCCcccccCcCCCCCCCcCCCCCcccEEEECCCC
Confidence            4455699999999998751                  367999999883                     1233333457


Q ss_pred             cccceEEccC-----CcE-EEEEeC
Q 030700           51 SLLGLTTTKE-----NNV-IIVCDS   69 (173)
Q Consensus        51 p~~gl~~~~~-----g~l-~~v~~~   69 (173)
                      |. |++|+++     |++ +|.++.
T Consensus       219 p~-gla~dp~tg~~~G~l~~~~~D~  242 (463)
T 2wg3_C          219 PG-RCAVDRHPTDININLTILCSDS  242 (463)
T ss_dssp             CC-BEEEESSCSSTTCSEEEEEECC
T ss_pred             cc-eEEECCCCCCcccceEEEeccc
Confidence            99 9999987     543 255663

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.23  E-value=0.00053  Score=50.49  Aligned_cols=156  Identities=10%  Similarity=-0.020  Sum_probs=81.3

Q ss_pred             CCcceEEEcCC-CCEEEEc-CCCeEEEEcCCC-c------EEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-
Q 030700           10 NHPEDVSVDGN-GVLYTAT-GDGWIKRMHPNG-T------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-   79 (173)
Q Consensus        10 ~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~g-~------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-   79 (173)
                      ....+|+|.|+ +.++++. .++.|..|+... +      ...+........ .++|+++|++++.+.....+...+.. 
T Consensus        39 ~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~-~~~~s~dg~~l~s~~~d~~i~~~~~~~  117 (340)
T 4aow_A           39 GWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVS-DVVISSDGQFALSGSWDGTLRLWDLTT  117 (340)
T ss_dssp             SCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEE-EEEECCCCCEEEEEcccccceEEeecc
Confidence            45678999996 6777655 788888887432 1      112222344566 99999999985555444444444432 


Q ss_pred             C-cEEEEeccCCccccCCccEEEcC----------CCcEEEEeCcCC-------cCcccc-----------eeeecccCC
Q 030700           80 G-VTVLVSQFNGSQLRFANDVIEAS----------DGSLYFTVSSTK-------FTPAEY-----------YLDLVSGEP  130 (173)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~~~----------dG~~~v~~~~~~-------~~~~~~-----------~~~~~~~~~  130 (173)
                      + .........    .....+.+.+          ||.+.+-+....       .+....           ...++....
T Consensus       118 ~~~~~~~~~~~----~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~  193 (340)
T 4aow_A          118 GTTTRRFVGHT----KDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGW  193 (340)
T ss_dssp             TEEEEEEECCS----SCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEET
T ss_pred             cceeeeecCCC----CceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcC
Confidence            2 211111111    1122223333          333322221100       000000           001122334


Q ss_pred             CceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEEEe
Q 030700          131 HGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       131 ~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ++.|..+|..+++......+ ....+.|+|+|++++|+.+.
T Consensus       194 d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s  234 (340)
T 4aow_A          194 DKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGG  234 (340)
T ss_dssp             TSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             CCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEe
Confidence            56788888887765554443 34457899999999877653

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=98.22  E-value=0.00041  Score=51.09  Aligned_cols=138  Identities=11%  Similarity=0.007  Sum_probs=83.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-C-cEE-EeccccCccccceEEcc-CCcEEEEEeCCCeEEEEcc-CC--c
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-G-TWE-DWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSE-EG--V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g-~~~-~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~-~g--~   81 (173)
                      ....++++.|++.++++. .++.|..||.. + ... .+........ .++|+| ++++++.+.....+...+. .+  .
T Consensus        98 ~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~  176 (304)
T 2ynn_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (304)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEE-EEEECTTCTTEEEEEETTSEEEEEETTCSSCS
T ss_pred             CcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEE-EEEECCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence            446789999988766554 88999999853 3 222 2333344566 899998 5677344443333444443 33  2


Q ss_pred             EEEEeccCCccccCCccEEEcC--CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEAS--DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVA  158 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~--dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~  158 (173)
                      ..+.....    ...+.+.+.+  ++.++++-                 ..++.|..+|..+++......+ ......++
T Consensus       177 ~~~~~~~~----~~v~~~~~~~~~~~~~l~s~-----------------s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~  235 (304)
T 2ynn_A          177 FTLTTGQE----RGVNYVDYYPLPDKPYMITA-----------------SDDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (304)
T ss_dssp             EEEECCCT----TCEEEEEECCSTTCCEEEEE-----------------ETTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             ceeccCCc----CcEEEEEEEEcCCCCEEEEE-----------------cCCCeEEEEeCCCCccceeeCCCCCCEEEEE
Confidence            22221111    2345566665  66666652                 2457899999987765444433 45567899


Q ss_pred             EccCCCEEEEE
Q 030700          159 LSEDERFLVVC  169 (173)
Q Consensus       159 ~~~dg~~lyv~  169 (173)
                      |+|+++.|+.+
T Consensus       236 ~~p~~~~l~s~  246 (304)
T 2ynn_A          236 FHPTLPIIISG  246 (304)
T ss_dssp             ECSSSSEEEEE
T ss_pred             ECCCCCEEEEE
Confidence            99999876654

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=98.22  E-value=3.5e-05  Score=67.02  Aligned_cols=137  Identities=10%  Similarity=0.046  Sum_probs=90.4

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEE
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~   84 (173)
                      ....+++++|+|..+ .+..++.|..|+. +++............ .+++++++++ +.+.....+..++. ++  ...+
T Consensus      1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~v~-~~~~~~~~~l-~~~~~dg~v~vwd~~~~~~~~~~ 1081 (1249)
T 3sfz_A         1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQAHQETVK-DFRLLQDSRL-LSWSFDGTVKVWNVITGRIERDF 1081 (1249)
T ss_dssp             SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEECCBCCSSCEE-EEEECSSSEE-EEEESSSEEEEEETTTTCCCEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEEEecCCCcEE-EEEEcCCCcE-EEEECCCcEEEEECCCCceeEEE
Confidence            456789999988655 5558889999985 445444444455566 8999998877 66555555666663 55  3443


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg  163 (173)
                      .. ..    .....++++|+|.++++..                 .++.|..+|..+++......+ ....+.++|+||+
T Consensus      1082 ~~-~~----~~v~~~~~s~d~~~l~s~s-----------------~d~~v~iwd~~~~~~~~~l~~h~~~v~~~~~s~dg 1139 (1249)
T 3sfz_A         1082 TC-HQ----GTVLSCAISSDATKFSSTS-----------------ADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLDG 1139 (1249)
T ss_dssp             EC-CS----SCCCCEEECSSSSSCEEEC-----------------CSSCCCEECSSSSSCSBCCCCCSSCEEEEEECSSS
T ss_pred             cc-cC----CcEEEEEECCCCCEEEEEc-----------------CCCcEEEEECCCcceeeeeccCCCcEEEEEECCCC
Confidence            22 11    3568899999998666532                 346777888776654333332 3445789999999


Q ss_pred             CEEEEEe
Q 030700          164 RFLVVCE  170 (173)
Q Consensus       164 ~~lyv~~  170 (173)
                      ++|+++.
T Consensus      1140 ~~lat~~ 1146 (1249)
T 3sfz_A         1140 ILLATGD 1146 (1249)
T ss_dssp             SEEEEEE
T ss_pred             CEEEEEe
Confidence            9887764

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.20  E-value=3.1e-05  Score=57.40  Aligned_cols=136  Identities=13%  Similarity=-0.016  Sum_probs=80.5

Q ss_pred             CccCCcceEEEcCCCCEE-EEcCCCeEEEEcC-CCc----EEEeccccCccccceEEccCCc-EEEEEeCCCeEEEEcc-
Q 030700            7 GIVNHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGT----WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKVSE-   78 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~----~~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~~~-   78 (173)
                      +--....+++|.|++.++ ++..++.|..|+. .+.    ............ .++++++++ +++++.....+..++. 
T Consensus         9 ~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~dg~i~~wd~~   87 (342)
T 1yfq_A            9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKVDLI   87 (342)
T ss_dssp             CCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEECSS
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceE-EEEECCCCCcEEEEEcCCCeEEEEEec
Confidence            333567889999988655 5558888888874 333    333334445667 999999999 7566655555666665 


Q ss_pred             CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC---------CeeEEee
Q 030700           79 EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST---------NQTSLVL  148 (173)
Q Consensus        79 ~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~---------~~~~~~~  148 (173)
                      .. ........  ........++++| +.++++..                 .++.|..+|..+         ++.....
T Consensus        88 ~~~~~~~~~~~--~~~~~v~~l~~~~-~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~  147 (342)
T 1yfq_A           88 GSPSFQALTNN--EANLGICRICKYG-DDKLIAAS-----------------WDGLIEVIDPRNYGDGVIAVKNLNSNNT  147 (342)
T ss_dssp             SSSSEEECBSC--CCCSCEEEEEEET-TTEEEEEE-----------------TTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred             cCCceEecccc--CCCCceEEEEeCC-CCEEEEEc-----------------CCCeEEEEcccccccccccccCCeeeEE
Confidence            54 32221110  0113567899999 77666532                 336777777653         2221112


Q ss_pred             ccccCcceEEEccCC
Q 030700          149 DGLYFANGVALSEDE  163 (173)
Q Consensus       149 ~~~~~p~gi~~~~dg  163 (173)
                      .....+..++|+|++
T Consensus       148 ~~~~~v~~~~~~~~~  162 (342)
T 1yfq_A          148 KVKNKIFTMDTNSSR  162 (342)
T ss_dssp             SSCCCEEEEEECSSE
T ss_pred             eeCCceEEEEecCCc
Confidence            223445678887775

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=98.19  E-value=0.00073  Score=49.73  Aligned_cols=139  Identities=10%  Similarity=-0.034  Sum_probs=81.3

Q ss_pred             CCcceEEEcCCC--CEEEEc-CCCeEEEEcCC-CcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEE
Q 030700           10 NHPEDVSVDGNG--VLYTAT-GDGWIKRMHPN-GTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g--~l~~~~-~~~~i~~~~~~-g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~   84 (173)
                      .....+++.+++  .++++. .++.|..|+.. ++... +........ .+++++++++++.+.....+...+......+
T Consensus       172 ~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~  250 (340)
T 4aow_A          172 EWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLN-TVTVSPDGSLCASGGKDGQAMLWDLNEGKHL  250 (340)
T ss_dssp             SCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTCEEEEEETTTTEEE
T ss_pred             CcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEE-EEEECCCCCEEEEEeCCCeEEEEEeccCcee
Confidence            344567777643  455444 77888888854 44333 333344566 9999999999555544444444453321111


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec----------cccCc
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD----------GLYFA  154 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~----------~~~~p  154 (173)
                      ......   .....+.+.|++.++.+.                  .++.|..+|.+++.......          .....
T Consensus       251 ~~~~~~---~~v~~~~~~~~~~~~~~~------------------~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v  309 (340)
T 4aow_A          251 YTLDGG---DIINALCFSPNRYWLCAA------------------TGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQC  309 (340)
T ss_dssp             EEEECS---SCEEEEEECSSSSEEEEE------------------ETTEEEEEETTTTEEEEEECCC-------CCCCCE
T ss_pred             eeecCC---ceEEeeecCCCCceeecc------------------CCCEEEEEECCCCeEEEeccccceeeeccCCCCCE
Confidence            111111   245678889988776653                  23678888877654332221          12334


Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      +.++|+||+++|+.+.
T Consensus       310 ~~l~~s~dg~~l~sgs  325 (340)
T 4aow_A          310 TSLAWSADGQTLFAGY  325 (340)
T ss_dssp             EEEEECTTSSEEEEEE
T ss_pred             EEEEECCCCCEEEEEe
Confidence            6799999999887653

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.19  E-value=0.00014  Score=58.84  Aligned_cols=136  Identities=11%  Similarity=0.018  Sum_probs=87.9

Q ss_pred             CcceEEEcCCCC-EEEEcCCCeEEEEcCCCc---------EEEe----ccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030700           11 HPEDVSVDGNGV-LYTATGDGWIKRMHPNGT---------WEDW----HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV   76 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g~---------~~~~----~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~   76 (173)
                      ...+++|+|+|. |+++..+|.|..|+..+.         +..+    ........ .++|+|+| + .++...+.+..+
T Consensus       131 sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~-sVawSPdg-L-aass~D~tVrlW  207 (588)
T 2j04_A          131 TYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVT-HIVWYEDV-L-VAALSNNSVFSM  207 (588)
T ss_dssp             CEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEE-EEEEETTE-E-EEEETTCCEEEE
T ss_pred             cEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEE-EEEEcCCc-E-EEEeCCCeEEEE
Confidence            467899999985 556668899999986543         1232    12234677 99999999 6 666666666666


Q ss_pred             ccCC-c-E-EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-cccc
Q 030700           77 SEEG-V-T-VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLY  152 (173)
Q Consensus        77 ~~~g-~-~-~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~  152 (173)
                      +.++ . . .......+. ......+++.  |...++..                  +++|..+|..+++..... ....
T Consensus       208 d~~~~~~~~~~~tL~~~h-~~~V~svaFs--g~~LASa~------------------~~tIkLWd~~~~~~~~~~~gh~~  266 (588)
T 2j04_A          208 TVSASSHQPVSRMIQNAS-RRKITDLKIV--DYKVVLTC------------------PGYVHKIDLKNYSISSLKTGSLE  266 (588)
T ss_dssp             CCCSSSSCCCEEEEECCC-SSCCCCEEEE--TTEEEEEC------------------SSEEEEEETTTTEEEEEECSCCS
T ss_pred             ECCCCccccceeeecccc-cCcEEEEEEE--CCEEEEEe------------------CCeEEEEECCCCeEEEEEcCCCc
Confidence            6544 2 1 111110111 1357889998  45555421                  268999998877774554 4455


Q ss_pred             CcceEEE--ccCCCEEEEEe
Q 030700          153 FANGVAL--SEDERFLVVCE  170 (173)
Q Consensus       153 ~p~gi~~--~~dg~~lyv~~  170 (173)
                      ...+|+|  +||+..|.++.
T Consensus       267 ~V~~va~~~s~d~~~La~a~  286 (588)
T 2j04_A          267 NFHIIPLNHEKESTILLMSN  286 (588)
T ss_dssp             CCCEEEETTCSSCEEEEECS
T ss_pred             eEEEEEeeeCCCCCEEEEEc
Confidence            5678999  99998777654

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.19  E-value=0.00014  Score=56.33  Aligned_cols=137  Identities=10%  Similarity=0.037  Sum_probs=82.6

Q ss_pred             CCcceEEEcC-CCCEEEEc-CCCeEEEEcCC-C---c-EEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEcc-C-
Q 030700           10 NHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN-G---T-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSE-E-   79 (173)
Q Consensus        10 ~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~-g---~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~-~-   79 (173)
                      ....+++|+| ++.++++. .++.|..|+.. +   + ...+......+. .++|+++++.++++.... .|..++. . 
T Consensus       232 ~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~~l~tg~~dg~v~vwd~~~~  310 (430)
T 2xyi_A          232 AVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVN-CLSFNPYSEFILATGSADKTVALWDLRNL  310 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEE-EEEECSSCTTEEEEEETTSEEEEEETTCT
T ss_pred             CCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeE-EEEeCCCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4578899999 66777655 78999999853 2   2 223333445677 999999887325444443 4544553 3 


Q ss_pred             C--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC--------------
Q 030700           80 G--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN--------------  142 (173)
Q Consensus        80 g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--------------  142 (173)
                      +  ...+... .    .....++++|+|. ++++..                 .+++|..+|....              
T Consensus       311 ~~~~~~~~~h-~----~~v~~i~~sp~~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~~~~~~~~~~  368 (430)
T 2xyi_A          311 KLKLHSFESH-K----DEIFQVQWSPHNETILASSG-----------------TDRRLHVWDLSKIGEEQSTEDAEDGPP  368 (430)
T ss_dssp             TSCSEEEECC-S----SCEEEEEECSSCTTEEEEEE-----------------TTSCCEEEEGGGTTCCCCHHHHHHCCT
T ss_pred             CCCeEEeecC-C----CCEEEEEECCCCCCEEEEEe-----------------CCCcEEEEeCCCCccccCccccccCCc
Confidence            2  3333221 1    3567899999984 666632                 2356666665431              


Q ss_pred             eeEEeec-cccCcceEEEccCCCEEEEE
Q 030700          143 QTSLVLD-GLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       143 ~~~~~~~-~~~~p~gi~~~~dg~~lyv~  169 (173)
                      ++..... ....++.++|+|++++++++
T Consensus       369 ~~~~~~~~h~~~v~~~~~~p~~~~~l~s  396 (430)
T 2xyi_A          369 ELLFIHGGHTAKISDFSWNPNEPWIICS  396 (430)
T ss_dssp             TEEEECCCCSSCEEEEEECSSSTTEEEE
T ss_pred             ceEEEcCCCCCCceEEEECCCCCCEEEE
Confidence            2222222 23457899999999844443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.18  E-value=0.00025  Score=60.37  Aligned_cols=139  Identities=6%  Similarity=-0.057  Sum_probs=86.6

Q ss_pred             CcceEEEcCCCC-EEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEe
Q 030700           11 HPEDVSVDGNGV-LYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVS   86 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~   86 (173)
                      ...+++|.| |. |..+..++.|..||. +++............ .+++++++++++++.....+..++. .+ ...+..
T Consensus        60 ~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~~~V~-~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~~~i  137 (902)
T 2oaj_A           60 AIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVPGKIT-SIDTDASLDWMLIGLQNGSMIVYDIDRDQLSSFKL  137 (902)
T ss_dssp             CEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECSSCEE-EEECCTTCSEEEEEETTSCEEEEETTTTEEEEEEE
T ss_pred             CEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCCCCEE-EEEECCCCCEEEEEcCCCcEEEEECCCCcccccee
Confidence            357899999 66 555558899999996 455433223344567 9999999999666655544555554 34 322211


Q ss_pred             --------ccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc------
Q 030700           87 --------QFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL------  151 (173)
Q Consensus        87 --------~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~------  151 (173)
                              ...+ .......++++|++ .++++-                 ..++.| .+|..+++........      
T Consensus       138 ~~~~~~~~~~~~-h~~~V~sl~~sp~~~~~l~~g-----------------~~dg~v-lWd~~~~~~~~~~~~~~~~g~~  198 (902)
T 2oaj_A          138 DNLQKSSFFPAA-RLSPIVSIQWNPRDIGTVLIS-----------------YEYVTL-TYSLVENEIKQSFIYELPPFAP  198 (902)
T ss_dssp             CCHHHHHTCSSS-CCCCCCEEEEETTEEEEEEEE-----------------CSSCEE-EEETTTTEEEEEECCCBCTTCC
T ss_pred             cccccccccccc-CCCCeEEEEEccCCCCEEEEE-----------------eCCCcE-EEECCCCceEEEEecccCCcCC
Confidence                    0111 12357889999964 444442                 134788 8998877654433321      


Q ss_pred             -------------cCcceEEEccCCCEEEEEe
Q 030700          152 -------------YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       152 -------------~~p~gi~~~~dg~~lyv~~  170 (173)
                                   ...+.++|+|||++|..+.
T Consensus       199 ~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs  230 (902)
T 2oaj_A          199 GGDFSEKTNEKRTPKVIQSLYHPNSLHIITIH  230 (902)
T ss_dssp             CSTTCCCTTSCBCCCEEEEEECTTSSEEEEEE
T ss_pred             CcccccccccccCCCeEEEEEcCCCCEEEEEE
Confidence                         3467899999999776653

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=98.17  E-value=0.00021  Score=59.19  Aligned_cols=139  Identities=11%  Similarity=0.005  Sum_probs=89.5

Q ss_pred             CCcceEEEcCCCC-EEEEcCCCeEEEEcCCC--cEEE-eccccCccccceEEcc-CCcEEEEEeCCCeEEEEcc-CC--c
Q 030700           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPNG--TWED-WHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSE-EG--V   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~g--~~~~-~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~-~g--~   81 (173)
                      ....+++|.|+|. |+++..++.|..|+.+.  .... +........ .++|++ ++++++++.....+..++. .+  .
T Consensus        98 ~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~-~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~  176 (814)
T 3mkq_A           98 DYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM-CVAFNPKDPSTFASGCLDRTVKVWSLGQSTPN  176 (814)
T ss_dssp             SCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE-EEEEETTEEEEEEEEETTSEEEEEETTCSSCS
T ss_pred             CCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE-EEEEEcCCCCEEEEEeCCCeEEEEECCCCcce
Confidence            4567899999886 44555888999998543  3322 223344566 899999 7777455554444555553 34  3


Q ss_pred             EEEEeccCCccccCCccEEEcC--CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEE
Q 030700           82 TVLVSQFNGSQLRFANDVIEAS--DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVA  158 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~--dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~  158 (173)
                      ..+....    ......++++|  +|.++++-.                 .++.|..+|..+++...... .......++
T Consensus       177 ~~~~~~~----~~~v~~~~~~~~~~~~~l~~~~-----------------~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~  235 (814)
T 3mkq_A          177 FTLTTGQ----ERGVNYVDYYPLPDKPYMITAS-----------------DDLTIKIWDYQTKSCVATLEGHMSNVSFAV  235 (814)
T ss_dssp             EEEECCC----TTCCCEEEECCSTTCCEEEEEC-----------------TTSEEEEEETTTTEEEEEEECCSSCEEEEE
T ss_pred             eEEecCC----CCCEEEEEEEECCCCCEEEEEe-----------------CCCEEEEEECCCCcEEEEEcCCCCCEEEEE
Confidence            3332211    13567889998  887666532                 34789999988776544443 345567899


Q ss_pred             EccCCCEEEEEe
Q 030700          159 LSEDERFLVVCE  170 (173)
Q Consensus       159 ~~~dg~~lyv~~  170 (173)
                      |+|+++.++++.
T Consensus       236 ~~~~~~~l~~~~  247 (814)
T 3mkq_A          236 FHPTLPIIISGS  247 (814)
T ss_dssp             ECSSSSEEEEEE
T ss_pred             EcCCCCEEEEEe
Confidence            999998777654

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=98.16  E-value=1.7e-05  Score=61.58  Aligned_cols=137  Identities=12%  Similarity=0.080  Sum_probs=81.4

Q ss_pred             CcceEEEcC-CCCEEE-EcCCCeEEEEcCCCcEEE-eccc---cCccccceEEccCCcEEEEEeCCCeEEEEccCC--cE
Q 030700           11 HPEDVSVDG-NGVLYT-ATGDGWIKRMHPNGTWED-WHQV---GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VT   82 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~-~~~~~~i~~~~~~g~~~~-~~~~---~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~   82 (173)
                      ...+|+|.| ++.+++ +..++.|..||..+.... +...   ..... .+++++++++++.+.....|..++.++  ..
T Consensus       166 ~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~g~~dg~i~~wd~~~~~~~  244 (435)
T 4e54_B          166 SITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFC-SLDVSASSRMVVTGDNVGNVILLNMDGKELW  244 (435)
T ss_dssp             CCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCC-CEEEETTTTEEEEECSSSBEEEEESSSCBCC
T ss_pred             CEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEE-EEEECCCCCEEEEEeCCCcEeeeccCcceeE
Confidence            457899998 676555 448899999997665433 2211   12345 789999999944444334455555555  22


Q ss_pred             EEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE-ee---ccccCcceE
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VL---DGLYFANGV  157 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~---~~~~~p~gi  157 (173)
                      .+. ..    ......++++|++. ++++..                 .++.|..+|..+.+... +.   ......+.+
T Consensus       245 ~~~-~h----~~~v~~v~~~p~~~~~~~s~s-----------------~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~  302 (435)
T 4e54_B          245 NLR-MH----KKKVTHVALNPCCDWFLATAS-----------------VDQTVKIWDLRQVRGKASFLYSLPHRHPVNAA  302 (435)
T ss_dssp             CSB-CC----SSCEEEEEECTTCSSEEEEEE-----------------TTSBCCEEETTTCCSSSCCSBCCBCSSCEEEC
T ss_pred             EEe-cc----cceEEeeeecCCCceEEEEec-----------------CcceeeEEecccccccceEEEeeeccccccce
Confidence            211 11    13467899999886 555421                 33567777765443211 11   112334678


Q ss_pred             EEccCCCEEEEEe
Q 030700          158 ALSEDERFLVVCE  170 (173)
Q Consensus       158 ~~~~dg~~lyv~~  170 (173)
                      +|+|||++|+.+.
T Consensus       303 ~~spdg~~l~s~~  315 (435)
T 4e54_B          303 CFSPDGARLLTTD  315 (435)
T ss_dssp             CBCTTSSEEEEEE
T ss_pred             eECCCCCeeEEEc
Confidence            9999999877653

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=98.16  E-value=8.7e-05  Score=57.48  Aligned_cols=138  Identities=10%  Similarity=-0.077  Sum_probs=84.4

Q ss_pred             CCcceEEEcCCCC-EEE-EcCCCeEEEEcCCC-----cE----EEeccccCccccceEEcc-CCcEEEEEeCCCeEEEEc
Q 030700           10 NHPEDVSVDGNGV-LYT-ATGDGWIKRMHPNG-----TW----EDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~-~~~~~~i~~~~~~g-----~~----~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~   77 (173)
                      ....+++|+|++. +++ +..++.|..|+...     ..    ..+........ .+++++ ++++++.+.....|..++
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~-~v~~~p~~~~~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVE-DVAWHLLHESLFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEE-EEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEe-eeEEeCCCCCEEEEEeCCCeEEEEE
Confidence            3467899999765 554 55789999998543     11    12223344567 899998 567734444344455555


Q ss_pred             c-CC-----cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-e-eEEee
Q 030700           78 E-EG-----VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-Q-TSLVL  148 (173)
Q Consensus        78 ~-~g-----~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-~-~~~~~  148 (173)
                      . .+     ...+. ..    ...++.++++|+|. ++++..                 .++.|..+|..+. . +..+.
T Consensus       261 ~~~~~~~~~~~~~~-~~----~~~v~~i~~~p~~~~~l~tg~-----------------~dg~v~vwd~~~~~~~~~~~~  318 (430)
T 2xyi_A          261 TRNNNTSKPSHTVD-AH----TAEVNCLSFNPYSEFILATGS-----------------ADKTVALWDLRNLKLKLHSFE  318 (430)
T ss_dssp             TTCSCSSSCSEEEE-CC----SSCEEEEEECSSCTTEEEEEE-----------------TTSEEEEEETTCTTSCSEEEE
T ss_pred             CCCCCCCcceeEee-cC----CCCeEEEEeCCCCCCEEEEEe-----------------CCCeEEEEeCCCCCCCeEEee
Confidence            3 22     22221 11    13578899999886 666521                 3478888998752 2 33333


Q ss_pred             ccccCcceEEEccCCCEEEEEe
Q 030700          149 DGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       149 ~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ........|+|+|+++.++++-
T Consensus       319 ~h~~~v~~i~~sp~~~~~l~s~  340 (430)
T 2xyi_A          319 SHKDEIFQVQWSPHNETILASS  340 (430)
T ss_dssp             CCSSCEEEEEECSSCTTEEEEE
T ss_pred             cCCCCEEEEEECCCCCCEEEEE
Confidence            3445667899999997666553

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.15  E-value=5.5e-05  Score=57.18  Aligned_cols=148  Identities=7%  Similarity=-0.006  Sum_probs=83.7

Q ss_pred             CcceEEEcC-CCC-EEEEc--CC----CeEEEEcCCCc-EEEeccc--cCccccceEEccCCcEEEEE-eCC--Ce--EE
Q 030700           11 HPEDVSVDG-NGV-LYTAT--GD----GWIKRMHPNGT-WEDWHQV--GSQSLLGLTTTKENNVIIVC-DSQ--QG--LL   74 (173)
Q Consensus        11 ~p~~l~~~~-~g~-l~~~~--~~----~~i~~~~~~g~-~~~~~~~--~~~p~~gl~~~~~g~l~~v~-~~~--~~--i~   74 (173)
                      ....+++.| +|. |++..  ..    ..|+.++.++. ...+...  ...+. .++|+++|+.|+++ ...  ..  ++
T Consensus       189 ~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~-~~~~spdg~~l~~~~~~~~~~~~~l~  267 (396)
T 3c5m_A          189 WLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCT-HEFWIPDGSAMAYVSYFKGQTDRVIY  267 (396)
T ss_dssp             CEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEE-EEEECTTSSCEEEEEEETTTCCEEEE
T ss_pred             ccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCcccc-ceEECCCCCEEEEEecCCCCccceEE
Confidence            356788999 664 55443  22    46899987554 3443332  22456 78999999853443 321  23  77


Q ss_pred             EEcc-CC-cEEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceee---ecccCCCceEEEEcCCCCeeEEee
Q 030700           75 KVSE-EG-VTVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLD---LVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        75 ~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~---~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      .++. ++ ...+.. ..+     .+ +.++| ||++++.....    .+....   .........|+.+|+++++...+.
T Consensus       268 ~~d~~~g~~~~l~~-~~~-----~~-~~~s~~dg~~l~~~~~~----~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~  336 (396)
T 3c5m_A          268 KANPETLENEEVMV-MPP-----CS-HLMSNFDGSLMVGDGCD----APVDVADADSYNIENDPFLYVLNTKAKSAQKLC  336 (396)
T ss_dssp             EECTTTCCEEEEEE-CCS-----EE-EEEECSSSSEEEEEECC----C----------CCCCCCEEEEEETTTTBCCEEE
T ss_pred             EEECCCCCeEEeee-CCC-----CC-CCccCCCCceEEEecCC----cceeeccccccccCCCCcEEEEecccCceEEcc
Confidence            7775 45 444432 221     12 78899 99876653210    000000   000113368999999887765554


Q ss_pred             cccc-----------CcceEEEccCCCEEEEEe
Q 030700          149 DGLY-----------FANGVALSEDERFLVVCE  170 (173)
Q Consensus       149 ~~~~-----------~p~gi~~~~dg~~lyv~~  170 (173)
                      ....           ....++|+|||+.|+++.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s  369 (396)
T 3c5m_A          337 KHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTS  369 (396)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEE
T ss_pred             CCCCccccccccccCCCCCceEccCCCeEEEEe
Confidence            4322           245679999999887764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=98.14  E-value=6.2e-05  Score=58.80  Aligned_cols=136  Identities=13%  Similarity=0.114  Sum_probs=78.8

Q ss_pred             CcceEEEcCCCCEEE----Ec-CCCeEEEEcCCCc-------------EEEeccccCccccceEEccC-CcEEEEEeCCC
Q 030700           11 HPEDVSVDGNGVLYT----AT-GDGWIKRMHPNGT-------------WEDWHQVGSQSLLGLTTTKE-NNVIIVCDSQQ   71 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~----~~-~~~~i~~~~~~g~-------------~~~~~~~~~~p~~gl~~~~~-g~l~~v~~~~~   71 (173)
                      ...+++|+++|.+++    +. .++.|..|+....             ...+........ +++|+++ ++++..+....
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~~~las~s~Dg  172 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVI-DMKWNPTVPSMVAVCLADG  172 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEE-EEEECSSCTTEEEEEETTS
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceE-EEEECCCCCCEEEEEECCC
Confidence            378899999987555    44 5778888873211             111112344567 9999997 77734444444


Q ss_pred             eEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-
Q 030700           72 GLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-  149 (173)
Q Consensus        72 ~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-  149 (173)
                      .+..++. .+.........   ...+..++++|+|..+++-                 ..++.|..||++ ++...... 
T Consensus       173 ~v~iwD~~~~~~~~~~~~~---~~~v~~v~wspdg~~lasg-----------------s~dg~v~iwd~~-~~~~~~~~~  231 (434)
T 2oit_A          173 SIAVLQVTETVKVCATLPS---TVAVTSVCWSPKGKQLAVG-----------------KQNGTVVQYLPT-LQEKKVIPC  231 (434)
T ss_dssp             CEEEEEESSSEEEEEEECG---GGCEEEEEECTTSSCEEEE-----------------ETTSCEEEECTT-CCEEEEECC
T ss_pred             eEEEEEcCCCcceeeccCC---CCceeEEEEcCCCCEEEEE-----------------cCCCcEEEEccC-CcccccccC
Confidence            4555553 44222111111   1357889999999755542                 134789999987 43332221 


Q ss_pred             cc-------cCcceEEEccCCCEEEE
Q 030700          150 GL-------YFANGVALSEDERFLVV  168 (173)
Q Consensus       150 ~~-------~~p~gi~~~~dg~~lyv  168 (173)
                      ..       .....++|++++.++.+
T Consensus       232 ~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          232 PPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             CTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             CcccCCCCceeEEEEEEecCceEEEE
Confidence            11       13457888888765543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=98.13  E-value=0.00012  Score=54.15  Aligned_cols=140  Identities=7%  Similarity=0.007  Sum_probs=85.2

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCC--c--EE-EeccccCccccceEEcc-CCcEEEEEeCCCeEEEEc--cC--
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG--T--WE-DWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVS--EE--   79 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g--~--~~-~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~--~~--   79 (173)
                      ..+.++++++++ ++++..++.|..|+...  .  .. .......... .+++++ ++++++++.....+...+  ..  
T Consensus       151 ~~v~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~-~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~  228 (342)
T 1yfq_A          151 NKIFTMDTNSSR-LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIR-DVALLPKEQEGYACSSIDGRVAVEFFDDQGD  228 (342)
T ss_dssp             CCEEEEEECSSE-EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEE-EEEECSGGGCEEEEEETTSEEEEEECCTTCC
T ss_pred             CceEEEEecCCc-EEEEeCCCeEEEEECCccccccceeeecCCCCcee-EEEECCCCCCEEEEEecCCcEEEEEEcCCCc
Confidence            456789999887 77777888999998643  2  11 2223344567 999999 998855554443333322  33  


Q ss_pred             ----C-cEEEEeccC---C-ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030700           80 ----G-VTVLVSQFN---G-SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG  150 (173)
Q Consensus        80 ----g-~~~~~~~~~---~-~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  150 (173)
                          . ...+.....   + ........++++|+|.++++-                 ..++.|..+|..+++.......
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-----------------~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          229 DYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTA-----------------GSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             STTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEE-----------------ETTSCEEEEETTTTEEEEECCC
T ss_pred             ccccccceeeecccccccccccceeEEEEEEcCCCCEEEEe-----------------cCCceEEEEcCccHhHhhhhhc
Confidence                2 333322110   0 001256789999999855552                 1347899999988775444443


Q ss_pred             c--cCcceEEEccCCCEEEEEe
Q 030700          151 L--YFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 ~--~~p~gi~~~~dg~~lyv~~  170 (173)
                      .  .....++  |++++|+.+-
T Consensus       292 ~h~~~v~~~~--~~~~~l~s~s  311 (342)
T 1yfq_A          292 FNEDSVVKIA--CSDNILCLAT  311 (342)
T ss_dssp             CSSSEEEEEE--ECSSEEEEEE
T ss_pred             ccCCCceEec--CCCCeEEEEe
Confidence            2  3345677  8998877653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=98.13  E-value=0.00028  Score=53.72  Aligned_cols=135  Identities=19%  Similarity=0.132  Sum_probs=83.3

Q ss_pred             cceEEEcCC-C-CEEEEcCCCeEEEEcC-CCcEEE-ec-----cccCccccceEEcc-CCcEEEEEeCCCe-EEEEcc--
Q 030700           12 PEDVSVDGN-G-VLYTATGDGWIKRMHP-NGTWED-WH-----QVGSQSLLGLTTTK-ENNVIIVCDSQQG-LLKVSE--   78 (173)
Q Consensus        12 p~~l~~~~~-g-~l~~~~~~~~i~~~~~-~g~~~~-~~-----~~~~~p~~gl~~~~-~g~l~~v~~~~~~-i~~~~~--   78 (173)
                      ...+++.|+ + .|+.+..++.|..||. +++... +.     ....... .+++++ ++++ +++...++ +...+.  
T Consensus       160 v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~-l~sgs~D~~v~~wd~~~  237 (380)
T 3iz6_a          160 ASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL-SLSINSLNANM-FISGSCDTTVRLWDLRI  237 (380)
T ss_dssp             CCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEE-EEEECSSSCCE-EEEEETTSCEEEEETTT
T ss_pred             eEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeE-EEEeecCCCCE-EEEEECCCeEEEEECCC
Confidence            445667774 3 4666668899999995 454432 21     1122345 777766 7788 54444444 444443  


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc------
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG------  150 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~------  150 (173)
                      .+  ...+.. ..    ...+.++++|+|..+++-.                 .++.|..+|..+++.......      
T Consensus       238 ~~~~~~~~~~-h~----~~v~~v~~~p~~~~l~s~s-----------------~D~~i~lwd~~~~~~~~~~~~~~~~~~  295 (380)
T 3iz6_a          238 TSRAVRTYHG-HE----GDINSVKFFPDGQRFGTGS-----------------DDGTCRLFDMRTGHQLQVYNREPDRND  295 (380)
T ss_dssp             TCCCCEEECC-CS----SCCCEEEECTTSSEEEEEC-----------------SSSCEEEEETTTTEEEEEECCCCSSSC
T ss_pred             CCcceEEECC-cC----CCeEEEEEecCCCeEEEEc-----------------CCCeEEEEECCCCcEEEEecccccccc
Confidence            22  333321 11    3578899999998877732                 457899999987765444322      


Q ss_pred             --ccCcceEEEccCCCEEEEEe
Q 030700          151 --LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 --~~~p~gi~~~~dg~~lyv~~  170 (173)
                        ......++|+|+|++|+...
T Consensus       296 ~~~~~v~~~~~s~~g~~l~~g~  317 (380)
T 3iz6_a          296 NELPIVTSVAFSISGRLLFAGY  317 (380)
T ss_dssp             CSSCSCSEEEECSSSSEEEEEC
T ss_pred             cccCceEEEEECCCCCEEEEEE
Confidence              12357899999999887753

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.10  E-value=0.00024  Score=53.64  Aligned_cols=138  Identities=9%  Similarity=-0.005  Sum_probs=81.7

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCC-cEEEec--------------cccCccccceEEcc-CCcEEEEEeCC
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNG-TWEDWH--------------QVGSQSLLGLTTTK-ENNVIIVCDSQ   70 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g-~~~~~~--------------~~~~~p~~gl~~~~-~g~l~~v~~~~   70 (173)
                      -....++++.| ++.++++. .++.|..|+.+. ......              ....... .+++++ ++++++.+...
T Consensus        43 ~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~s~~~d  121 (408)
T 4a11_B           43 GGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVE-TVQWYPHDTGMFTSSSFD  121 (408)
T ss_dssp             SSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEE-EEEECTTCTTCEEEEETT
T ss_pred             CCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEE-EEEEccCCCcEEEEEeCC
Confidence            35567899999 88766544 788899998543 211110              1334566 899998 66674555444


Q ss_pred             CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCC---CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           71 QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASD---GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        71 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~d---G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      ..+..++. .+ ...... ..    .....+.+.+.   +.++++.                 ..++.|..+|..+++..
T Consensus       122 ~~i~iwd~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          122 KTLKVWDTNTLQTADVFN-FE----ETVYSHHMSPVSTKHCLVAVG-----------------TRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             SEEEEEETTTTEEEEEEE-CS----SCEEEEEECSSCSSCCEEEEE-----------------ESSSSEEEEESSSSCCC
T ss_pred             CeEEEeeCCCCccceecc-CC----CceeeeEeecCCCCCcEEEEE-----------------cCCCeEEEEeCCCccee
Confidence            44555554 44 222222 11    23456777764   3355542                 13478888998776543


Q ss_pred             Eeec-cccCcceEEEccCCCE-EEEE
Q 030700          146 LVLD-GLYFANGVALSEDERF-LVVC  169 (173)
Q Consensus       146 ~~~~-~~~~p~gi~~~~dg~~-lyv~  169 (173)
                      .... .......++|+|+++. ++++
T Consensus       180 ~~~~~~~~~v~~~~~~~~~~~ll~~~  205 (408)
T 4a11_B          180 HILQGHRQEILAVSWSPRYDYILATA  205 (408)
T ss_dssp             EEECCCCSCEEEEEECSSCTTEEEEE
T ss_pred             eeecCCCCcEEEEEECCCCCcEEEEE
Confidence            3333 3455678999999985 4443

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=98.10  E-value=0.00014  Score=58.25  Aligned_cols=138  Identities=9%  Similarity=0.022  Sum_probs=85.4

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCC-CcE--EEeccccCccccce--EEccCC-cEEEEEeCCCeEEEEc-c-CC-
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN-GTW--EDWHQVGSQSLLGL--TTTKEN-NVIIVCDSQQGLLKVS-E-EG-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~--~~~~~~~~~p~~gl--~~~~~g-~l~~v~~~~~~i~~~~-~-~g-   80 (173)
                      ....+++|.+++.|..+..++.|..||.. +..  ..+........ .+  +++++| ++ +++...++.+++. . ++ 
T Consensus       267 ~~v~sv~~s~~~~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~-sv~~~~s~~g~~~-laS~S~D~tvklWD~~~~~  344 (524)
T 2j04_B          267 SLITTFDFLSPTTVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYIL-SVSTAYSDFEDTV-VSTVAVDGYFYIFNPKDIA  344 (524)
T ss_dssp             TCEEEEEESSSSEEEEEETTSEEEEEETTBCSSCSEEEECSSSCEE-EEEEECCTTSCCE-EEEEETTSEEEEECGGGHH
T ss_pred             CCEEEEEecCCCeEEEEeCCCEEEEEECCCCCCceEEeecccccEE-EEEEEcCCCCCeE-EEEeccCCeEEEEECCCCC
Confidence            34567889887767677789999999964 421  22223334455 77  567787 77 5554455555554 3 44 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee-EEeeccccCcceEE
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT-SLVLDGLYFANGVA  158 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~-~~~~~~~~~p~gi~  158 (173)
                       ...+......   .....++++|+|..+++..                 .++.|..+|..++.. ..+.......+.|+
T Consensus       345 ~~~~~~~~~~~---~~v~~v~fsp~~~~l~s~~-----------------~d~tv~lwd~~~~~~~~~l~gH~~~V~sva  404 (524)
T 2j04_B          345 TTKTTVSRFRG---SNLVPVVYCPQIYSYIYSD-----------------GASSLRAVPSRAAFAVHPLVSRETTITAIG  404 (524)
T ss_dssp             HHCEEEEECSC---CSCCCEEEETTTTEEEEEC-----------------SSSEEEEEETTCTTCCEEEEECSSCEEEEE
T ss_pred             ccccccccccc---CcccceEeCCCcCeEEEeC-----------------CCCcEEEEECcccccceeeecCCCceEEEE
Confidence             3333322211   1356799999998777632                 235788888876653 33334455678999


Q ss_pred             EccCCCEEEEE
Q 030700          159 LSEDERFLVVC  169 (173)
Q Consensus       159 ~~~dg~~lyv~  169 (173)
                      |+|+|+.|..+
T Consensus       405 ~Sp~g~~l~Sg  415 (524)
T 2j04_B          405 VSRLHPMVLAG  415 (524)
T ss_dssp             CCSSCCBCEEE
T ss_pred             eCCCCCeEEEE
Confidence            99999876544

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=98.07  E-value=0.00057  Score=50.93  Aligned_cols=140  Identities=14%  Similarity=0.063  Sum_probs=79.1

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCC---cEEEec--c-ccCccccceEEccCCcEEEEEeCCCeEEEEccCC-c-
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG---TWEDWH--Q-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-V-   81 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g---~~~~~~--~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~-   81 (173)
                      ....+++++++ .|..+..++.|..|+...   ......  . ...... .++|++++++|..+.....+...+... . 
T Consensus        15 ~~v~~~~~s~~-~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~-~v~~sp~~~~las~s~D~~v~iw~~~~~~~   92 (330)
T 2hes_X           15 EKIWSFDFSQG-ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIR-SVAWRPHTSLLAAGSFDSTVSIWAKEESAD   92 (330)
T ss_dssp             SCEEEEEEETT-EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEE-EEEECTTSSEEEEEETTSCEEEEEC-----
T ss_pred             CceeeeccCCC-EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEE-EEEECCCCCEEEEEeCCCcEEEEEcccCcC
Confidence            34566888777 444445888898888543   222222  1 334466 899999999845444333344333321 0 


Q ss_pred             ----EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-C---eeEEee-cccc
Q 030700           82 ----TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-N---QTSLVL-DGLY  152 (173)
Q Consensus        82 ----~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~---~~~~~~-~~~~  152 (173)
                          ......+.+. ......++++|+|+++++-.                 .++.|..+|... +   +..... ....
T Consensus        93 ~~~~~~~~~~~~~h-~~~V~~v~~sp~g~~las~s-----------------~D~~v~iwd~~~~~~~~~~~~~~~~h~~  154 (330)
T 2hes_X           93 RTFEMDLLAIIEGH-ENEVKGVAWSNDGYYLATCS-----------------RDKSVWIWETDESGEEYECISVLQEHSQ  154 (330)
T ss_dssp             --CCCEEEEEEC-----CEEEEEECTTSCEEEEEE-----------------TTSCEEEEECCTTCCCCEEEEEECCCSS
T ss_pred             ccccceeEEEEcCC-CCcEEEEEECCCCCEEEEEe-----------------CCCEEEEEeccCCCCCeEEEEEeccCCC
Confidence                0111112221 13567899999998777632                 346788888732 2   222222 2344


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      ..+.++|+|+++.|+.+
T Consensus       155 ~v~~v~~~p~~~~l~s~  171 (330)
T 2hes_X          155 DVKHVIWHPSEALLASS  171 (330)
T ss_dssp             CEEEEEECSSSSEEEEE
T ss_pred             ceEEEEECCCCCEEEEE
Confidence            56789999999877654

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=98.07  E-value=0.00078  Score=49.37  Aligned_cols=137  Identities=12%  Similarity=0.096  Sum_probs=77.1

Q ss_pred             CCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC---c-EEEeccccCccccceEEcc--CCcEEEEEeCCCeEEEEcc
Q 030700            6 EGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG---T-WEDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus         6 ~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g---~-~~~~~~~~~~p~~gl~~~~--~g~l~~v~~~~~~i~~~~~   78 (173)
                      .+--....+++++++|..+++. .++.|..|+.++   + ...+....+... .++|++  ++++|+.+.....+...+.
T Consensus         6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~-~v~~s~~~~g~~l~s~s~D~~v~iWd~   84 (297)
T 2pm7_B            6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVMIWKE   84 (297)
T ss_dssp             CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEE-EEEECCGGGCSEEEEEETTTEEEEEEB
T ss_pred             cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeE-EEEecCCCcCCEEEEEcCCCEEEEEEc
Confidence            3333456789999999766555 788898888643   2 223333444566 899975  3788444443333444443


Q ss_pred             -CC-cEEEEeccCCccccCCccEEEcCC--CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe---eEEeeccc
Q 030700           79 -EG-VTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ---TSLVLDGL  151 (173)
Q Consensus        79 -~g-~~~~~~~~~~~~~~~~~~l~~~~d--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~~~  151 (173)
                       .+ ...+... .+. ....+.++++|+  |.++++-                 ..++.|..+|..++.   ...+....
T Consensus        85 ~~~~~~~~~~~-~~h-~~~v~~v~~~p~~~g~~l~s~-----------------s~d~~v~~wd~~~~~~~~~~~~~~h~  145 (297)
T 2pm7_B           85 ENGRWSQIAVH-AVH-SASVNSVQWAPHEYGPMLLVA-----------------SSDGKVSVVEFKENGTTSPIIIDAHA  145 (297)
T ss_dssp             SSSCBCCCEEE-CCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEEBCSSSCBCCEEEECCS
T ss_pred             CCCceEEEEEe-ecC-CCceeEEEeCcCCCCcEEEEE-----------------ECCCcEEEEEecCCCceeeeeeeccc
Confidence             34 2221111 111 134678999987  7666652                 134677777765432   12222223


Q ss_pred             cCcceEEEccC
Q 030700          152 YFANGVALSED  162 (173)
Q Consensus       152 ~~p~gi~~~~d  162 (173)
                      ...+.++|+|+
T Consensus       146 ~~v~~~~~~p~  156 (297)
T 2pm7_B          146 IGVNSASWAPA  156 (297)
T ss_dssp             SCEEEEEECCC
T ss_pred             CccceEeecCC
Confidence            44567888886

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=98.04  E-value=0.00036  Score=53.69  Aligned_cols=144  Identities=12%  Similarity=0.119  Sum_probs=84.4

Q ss_pred             cCCcceEEEcC-CCCEEEEc-CCCeEEEEcCC----Cc-E--EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-
Q 030700            9 VNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPN----GT-W--EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-   78 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~----g~-~--~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-   78 (173)
                      -....++++.| +|.++++. .++.|..|+..    +. .  ........... .+++++++++++.+.....+..++. 
T Consensus        63 ~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~s~dg~i~vwd~~  141 (437)
T 3gre_A           63 PNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVT-QITMIPNFDAFAVSSKDGQIIVLKVN  141 (437)
T ss_dssp             TSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEEEE
T ss_pred             CCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeeccCCCCEE-EEEEeCCCCEEEEEeCCCEEEEEEec
Confidence            35678899999 88766555 88889888842    32 1  11112345567 9999999998555544443433332 


Q ss_pred             ---CC-cEEEEec-----cCCc---cccCCccEE--EcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           79 ---EG-VTVLVSQ-----FNGS---QLRFANDVI--EASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        79 ---~g-~~~~~~~-----~~~~---~~~~~~~l~--~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                         .+ .......     +.-.   .......+.  .++++.++++-                 ..++.|..+|..+++.
T Consensus       142 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------------~~d~~i~iwd~~~~~~  204 (437)
T 3gre_A          142 HYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVAL-----------------TNLSRVIIFDIRTLER  204 (437)
T ss_dssp             EEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEE-----------------ETTSEEEEEETTTCCE
T ss_pred             cccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEE-----------------eCCCeEEEEeCCCCee
Confidence               33 2111110     0000   001222333  44666655542                 2457999999987765


Q ss_pred             EEeecc---ccCcceEEEccCCCEEEEEe
Q 030700          145 SLVLDG---LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       145 ~~~~~~---~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ......   ....+.++|+|++++|+.+.
T Consensus       205 ~~~~~~~~h~~~v~~~~~s~~~~~l~s~~  233 (437)
T 3gre_A          205 LQIIENSPRHGAVSSICIDEECCVLILGT  233 (437)
T ss_dssp             EEEEECCGGGCCEEEEEECTTSCEEEEEE
T ss_pred             eEEEccCCCCCceEEEEECCCCCEEEEEc
Confidence            444433   45678899999999887764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=98.04  E-value=0.0002  Score=52.50  Aligned_cols=98  Identities=14%  Similarity=0.153  Sum_probs=56.5

Q ss_pred             CCcceEEEcCC--CCEE-EEcCCCeEEEEcC-CCcEE-Ee-------------ccccCccccceEEccC---CcEEEEEe
Q 030700           10 NHPEDVSVDGN--GVLY-TATGDGWIKRMHP-NGTWE-DW-------------HQVGSQSLLGLTTTKE---NNVIIVCD   68 (173)
Q Consensus        10 ~~p~~l~~~~~--g~l~-~~~~~~~i~~~~~-~g~~~-~~-------------~~~~~~p~~gl~~~~~---g~l~~v~~   68 (173)
                      ....++++.|+  +.++ ++..++.|..||. +++.. .+             ........ .++++++   +++++++.
T Consensus       111 ~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~l~~~~  189 (351)
T 3f3f_A          111 GSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDF-CLSWCPSRFSPEKLAVSA  189 (351)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCE-EEEECCCSSSCCEEEEEE
T ss_pred             CceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCccccee-EEEeccCCCCCcEEEEec
Confidence            45678999997  8755 4458889999984 33211 00             01223456 8888886   77755555


Q ss_pred             CCCeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCC----cEEEE
Q 030700           69 SQQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDG----SLYFT  110 (173)
Q Consensus        69 ~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG----~~~v~  110 (173)
                      ....++..+. .+ ...+.. ..+. ......++++|+|    .++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~-~~~h-~~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          190 LEQAIIYQRGKDGKLHVAAK-LPGH-KSLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             TTEEEEEEECTTSCEEEEEE-CCCC-CSCEEEEEECCCSSCSSEEEEE
T ss_pred             CCCcEEEEccCCCceeeeee-cCCC-CcceeEEEECCCCCCcceEEEE
Confidence            4444433333 44 333322 2221 1356789999998    56655

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=98.03  E-value=0.00051  Score=51.80  Aligned_cols=139  Identities=12%  Similarity=0.032  Sum_probs=84.1

Q ss_pred             cCCcceEEEcC-CCCEE-EEcCCCeEEEEcCC-CcEEEeccccCccccceEEcc---CCcEEEEEeCCCeEEEEcc-CC-
Q 030700            9 VNHPEDVSVDG-NGVLY-TATGDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTK---ENNVIIVCDSQQGLLKVSE-EG-   80 (173)
Q Consensus         9 ~~~p~~l~~~~-~g~l~-~~~~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~---~g~l~~v~~~~~~i~~~~~-~g-   80 (173)
                      -....++++.| ++.++ .+..++.|..|+.. ++............ .+.+.+   ++.+++++.....+..++. .+ 
T Consensus        99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  177 (408)
T 4a11_B           99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVY-SHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGS  177 (408)
T ss_dssp             SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECSSCSSCCEEEEEESSSSEEEEESSSSC
T ss_pred             CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccCCCcee-eeEeecCCCCCcEEEEEcCCCeEEEEeCCCcc
Confidence            34577899999 66555 45578999999864 44443333444455 777776   4457455555555666664 44 


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--eEEe---------
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSLV---------  147 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~~---------  147 (173)
                       ...+. ...    .....++++|++. ++++..                 .++.|..+|..++.  ...+         
T Consensus       178 ~~~~~~-~~~----~~v~~~~~~~~~~~ll~~~~-----------------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~  235 (408)
T 4a11_B          178 CSHILQ-GHR----QEILAVSWSPRYDYILATAS-----------------ADSRVKLWDVRRASGCLITLDQHNGKKSQ  235 (408)
T ss_dssp             CCEEEC-CCC----SCEEEEEECSSCTTEEEEEE-----------------TTSCEEEEETTCSSCCSEECCTTTTCSCC
T ss_pred             eeeeec-CCC----CcEEEEEECCCCCcEEEEEc-----------------CCCcEEEEECCCCCcccccccccccccce
Confidence             33332 111    3467899999987 565521                 34678888876443  1111         


Q ss_pred             ------eccccCcceEEEccCCCEEEEEe
Q 030700          148 ------LDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       148 ------~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                            .........++|+|++++|+++.
T Consensus       236 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  264 (408)
T 4a11_B          236 AVESANTAHNGKVNGLCFTSDGLHLLTVG  264 (408)
T ss_dssp             CTTTSSCSCSSCEEEEEECTTSSEEEEEE
T ss_pred             eeccccccccCceeEEEEcCCCCEEEEec
Confidence                  11123456899999999888764

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=98.03  E-value=0.00052  Score=52.19  Aligned_cols=104  Identities=17%  Similarity=0.276  Sum_probs=67.4

Q ss_pred             cCCcceEEE--cC-CCC--EEEEcCCCeEEEEcC----CCc----EEEeccccCccccceEEccCCcEEEEEeCCCeEEE
Q 030700            9 VNHPEDVSV--DG-NGV--LYTATGDGWIKRMHP----NGT----WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK   75 (173)
Q Consensus         9 ~~~p~~l~~--~~-~g~--l~~~~~~~~i~~~~~----~g~----~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~   75 (173)
                      +..|.|+|.  ++ .|.  +|+++.++.+..|..    +|.    +.+-...++.|. |+++|+....||+++...+|++
T Consensus       127 ~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~E-gcvvDd~~g~Lyv~eEd~GIw~  205 (355)
T 3amr_A          127 INEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTE-GMAADDEYGRLYIAEEDEAIWK  205 (355)
T ss_dssp             CSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEE-EEEEETTTTEEEEEETTTEEEE
T ss_pred             CCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcc-eEEEcCCCCeEEEecccceEEE
Confidence            578999999  77 464  667777788877542    332    223234567899 9999976545599998889999


Q ss_pred             Ec--cCC--cEEEEeccCCccc-cCCccEEEc--CCC--cEEEEeCc
Q 030700           76 VS--EEG--VTVLVSQFNGSQL-RFANDVIEA--SDG--SLYFTVSS  113 (173)
Q Consensus        76 ~~--~~g--~~~~~~~~~~~~~-~~~~~l~~~--~dG--~~~v~~~~  113 (173)
                      ++  +++  ...+.....+..+ ..+.+|++.  ++|  .+++++..
T Consensus       206 ~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG  252 (355)
T 3amr_A          206 FSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQG  252 (355)
T ss_dssp             EECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGG
T ss_pred             EeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCC
Confidence            99  333  2223333322222 368999995  444  47777633

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=98.01  E-value=0.0002  Score=60.90  Aligned_cols=135  Identities=11%  Similarity=0.046  Sum_probs=84.6

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~   84 (173)
                      ....+++|+|+|.+.++. .++.|..|+..+.. ........... .++|++ |++|+.+.....+..++. ++  ...+
T Consensus        18 ~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~~~~~~~~V~-~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~   95 (902)
T 2oaj_A           18 SKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVIKLEDRSAIK-EMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTV   95 (902)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEEECSSCCCEE-EEEEET-TTEEEEEETTCEEEEEETTTCSEEEEE
T ss_pred             CCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEEEcCCCCCEE-EEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEE
Confidence            457889999999877555 88999999865533 22223334456 999999 776355544444554553 44  3333


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee------------cccc
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL------------DGLY  152 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------------~~~~  152 (173)
                      .  ..    .....++++|+|..+++-                 ..++.|..||.++++.....            ....
T Consensus        96 ~--~~----~~V~~v~~sp~g~~l~sg-----------------s~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~  152 (902)
T 2oaj_A           96 F--VP----GKITSIDTDASLDWMLIG-----------------LQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLS  152 (902)
T ss_dssp             E--CS----SCEEEEECCTTCSEEEEE-----------------ETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCC
T ss_pred             c--CC----CCEEEEEECCCCCEEEEE-----------------cCCCcEEEEECCCCccccceeccccccccccccCCC
Confidence            2  11    356789999999865542                 23478999998877653211            1123


Q ss_pred             CcceEEEccCC-CEEEEE
Q 030700          153 FANGVALSEDE-RFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg-~~lyv~  169 (173)
                      ....|+|+|++ +.++++
T Consensus       153 ~V~sl~~sp~~~~~l~~g  170 (902)
T 2oaj_A          153 PIVSIQWNPRDIGTVLIS  170 (902)
T ss_dssp             CCCEEEEETTEEEEEEEE
T ss_pred             CeEEEEEccCCCCEEEEE
Confidence            45789999963 445443

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=98.00  E-value=3.2e-05  Score=63.61  Aligned_cols=144  Identities=8%  Similarity=-0.079  Sum_probs=78.9

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEEecccc-------------------CccccceEEccCCcEEEEEeCC
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN-GTWEDWHQVG-------------------SQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~~~~~~-------------------~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ....++|+|+|+.++...++.|+.++.+ |+...+...+                   .... +++|+|||+.|+++...
T Consensus       111 ~~~~~~~SPDG~~la~~~~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~-~~~wSPDG~~la~~~~d  189 (719)
T 1z68_A          111 PIQYLCWSPVGSKLAYVYQNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKY-ALWWSPNGKFLAYAEFN  189 (719)
T ss_dssp             SBCCEEECSSTTCEEEEETTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSC-CEEECTTSSEEEEEEEE
T ss_pred             ccccceECCCCCEEEEEECCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcc-cEEECCCCCEEEEEEEC
Confidence            4677999999954333345789999864 4443332111                   1125 79999999875554321


Q ss_pred             -C---------------------------------eEEEEccCC--cE---EEEec--cCCccccCCccEEEcCCCcEEE
Q 030700           71 -Q---------------------------------GLLKVSEEG--VT---VLVSQ--FNGSQLRFANDVIEASDGSLYF  109 (173)
Q Consensus        71 -~---------------------------------~i~~~~~~g--~~---~~~~~--~~~~~~~~~~~l~~~~dG~~~v  109 (173)
                       .                                 .+..++.++  ..   .+...  ..+ .......++++|||++++
T Consensus       190 ~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~SpD~~~~~  268 (719)
T 1z68_A          190 DTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIAS-SDYYFSWLTWVTDERVCL  268 (719)
T ss_dssp             CTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHT-SCEEEEEEEESSSSEEEE
T ss_pred             CCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCC-CcceEEEeEEeCCCeEEE
Confidence             1                                 233333322  10   11000  000 012346789999998766


Q ss_pred             EeCcCCcCcccceeeecccCCCceEEEEc----CCCCeeEEee----cc-ccCcc-----eEEEccCCCEEEEE
Q 030700          110 TVSSTKFTPAEYYLDLVSGEPHGVLLKYD----PSTNQTSLVL----DG-LYFAN-----GVALSEDERFLVVC  169 (173)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d----~~~~~~~~~~----~~-~~~p~-----gi~~~~dg~~lyv~  169 (173)
                      +....             ......|+.+|    +++++...+.    .+ -...+     .++|+|||+.+++.
T Consensus       269 ~~~~~-------------~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  329 (719)
T 1z68_A          269 QWLKR-------------VQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI  329 (719)
T ss_dssp             EEEES-------------STTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred             EEecc-------------ccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence            62110             11224789999    8777655444    11 12222     78999999977663

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.99  E-value=0.00015  Score=60.44  Aligned_cols=142  Identities=14%  Similarity=0.046  Sum_probs=84.3

Q ss_pred             CCcceEEEcCC--CCEEE-EcCCCeEEEEcCCCc----EEEeccccCccccceEEcc-------------CCcEEEEEeC
Q 030700           10 NHPEDVSVDGN--GVLYT-ATGDGWIKRMHPNGT----WEDWHQVGSQSLLGLTTTK-------------ENNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~--g~l~~-~~~~~~i~~~~~~g~----~~~~~~~~~~p~~gl~~~~-------------~g~l~~v~~~   69 (173)
                      ....++++.|+  |.+++ +..++.|..|+....    ............ .+++++             ++++++++..
T Consensus       100 ~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~-~l~~~p~~~~~~~~~~~~~d~~~l~sgs~  178 (753)
T 3jro_A          100 ASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGA  178 (753)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEE-EEEECCCC---------CGGGCCEEEEET
T ss_pred             CCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceE-EEEecCcccccccccccCCCCCEEEEEEC
Confidence            45678999997  86654 448899999985332    222223344556 888888             4777455554


Q ss_pred             CCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCC---CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           70 QQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASD---GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        70 ~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~d---G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      ...+..++. .+  .........+. ......++++|+   |.++++..                 .++.|..+|..+++
T Consensus       179 dg~I~iwd~~~~~~~~~~~~~~~~h-~~~V~~l~~sp~~~~~~~l~s~s-----------------~Dg~I~iwd~~~~~  240 (753)
T 3jro_A          179 DNLVKIWKYNSDAQTYVLESTLEGH-SDWVRDVAWSPTVLLRSYLASVS-----------------QDRTCIIWTQDNEQ  240 (753)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCC-SSCEEEEEECCCCSSSEEEEEEE-----------------SSSCEEEEEESSSS
T ss_pred             CCeEEEEeccCCcccceeeeeecCC-CCcEEEEEeccCCCCCCEEEEEe-----------------cCCEEEEecCCCCC
Confidence            444554542 33  22222222221 135688999999   77666632                 34678888876542


Q ss_pred             eE---Eeec---cccCcceEEEccCCCEEEEEe
Q 030700          144 TS---LVLD---GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ~~---~~~~---~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..   ....   .......++|+|+++.++++.
T Consensus       241 ~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s  273 (753)
T 3jro_A          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALSG  273 (753)
T ss_dssp             SCCBCCBSSSSCCSSCCCCEEECTTTCCEEEEC
T ss_pred             CcceeEEeccCCCCCceEEEEEcCCCCEEEEEc
Confidence            11   1111   234456899999999877653

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.98  E-value=0.00028  Score=52.48  Aligned_cols=136  Identities=7%  Similarity=0.017  Sum_probs=78.9

Q ss_pred             CcceEEEcCCCC-EEEEc-C----CCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeC--------------
Q 030700           11 HPEDVSVDGNGV-LYTAT-G----DGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDS--------------   69 (173)
Q Consensus        11 ~p~~l~~~~~g~-l~~~~-~----~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~--------------   69 (173)
                      ....++|+|+|. |++.. .    ...|+.++.+ |+...+..... .. .++++|||+.|+++..              
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~-~~-~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN-IR-SLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE-EE-EEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC-cc-ceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            456789999985 55444 2    1248888865 44444433333 67 8999999986565531              


Q ss_pred             -------------CCeEEEEcc-CC-c-EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCce
Q 030700           70 -------------QQGLLKVSE-EG-V-TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGV  133 (173)
Q Consensus        70 -------------~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~  133 (173)
                                   ...++.++. .| . ..+..     +  ....++++||| ++++........        ...+...
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-----~--~~~~~~~spdg-~~~~~~~~~~~~--------~~~~~~~  201 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-----P--RFSSGIWHRDK-IVVNVPHREIIP--------QYFKFWD  201 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEE-----E--TTCEEEEETTE-EEEEEECCCSSC--------CSSCCEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecC-----C--CcccccCCCCe-EEEEEecccccc--------ccccccc
Confidence                         134676775 44 4 44432     1  45778999999 766532100000        0001358


Q ss_pred             EEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          134 LLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      |+.+|  +++.+.+... ...  ..++|||+.|+++
T Consensus       202 l~~~d--~~~~~~l~~~-~~~--~~~spdg~~l~~~  232 (347)
T 2gop_A          202 IYIWE--DGKEEKMFEK-VSF--YAVDSDGERILLY  232 (347)
T ss_dssp             EEEEE--TTEEEEEEEE-ESE--EEEEECSSCEEEE
T ss_pred             EEEeC--CCceEEeccC-cce--eeECCCCCEEEEE
Confidence            99999  5776666544 221  2338898877654

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=97.98  E-value=0.0013  Score=48.70  Aligned_cols=113  Identities=9%  Similarity=-0.002  Sum_probs=70.9

Q ss_pred             cCCcceEEEcCC---CCEE-EEcCCCeEEEEcCC--CcEE--EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-C
Q 030700            9 VNHPEDVSVDGN---GVLY-TATGDGWIKRMHPN--GTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-E   79 (173)
Q Consensus         9 ~~~p~~l~~~~~---g~l~-~~~~~~~i~~~~~~--g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~   79 (173)
                      -....+++++|+   |.++ .+..++.|..|+.+  +...  .+........ .+++++++++++.+.....+..++. .
T Consensus        39 ~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~l~s~~~dg~v~iwd~~~  117 (368)
T 3mmy_A           39 DDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVL-DVCWSDDGSKVFTASCDKTAKMWDLSS  117 (368)
T ss_dssp             SSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEE-EEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             CCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEE-EEEECcCCCEEEEEcCCCcEEEEEcCC
Confidence            356788999997   5655 44588888888854  4432  3333455667 9999999998555554444555554 4


Q ss_pred             C-cEEEEeccCCccccCCccEEE--cCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           80 G-VTVLVSQFNGSQLRFANDVIE--ASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~--~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      + ...+.. ..    .....+++  +++|.++++..                 .++.|..+|..+++.
T Consensus       118 ~~~~~~~~-~~----~~v~~~~~~~~~~~~~l~~~~-----------------~dg~i~vwd~~~~~~  163 (368)
T 3mmy_A          118 NQAIQIAQ-HD----APVKTIHWIKAPNYSCVMTGS-----------------WDKTLKFWDTRSSNP  163 (368)
T ss_dssp             TEEEEEEE-CS----SCEEEEEEEECSSCEEEEEEE-----------------TTSEEEEECSSCSSC
T ss_pred             CCceeecc-cc----CceEEEEEEeCCCCCEEEEcc-----------------CCCcEEEEECCCCcE
Confidence            4 322221 11    34677888  88887666532                 346788888766543

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=97.95  E-value=0.00085  Score=48.73  Aligned_cols=133  Identities=12%  Similarity=0.163  Sum_probs=80.4

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCCCc-EEEeccccCccccceEEcc-CCcEEEEEeCCCeEEEEccCC-cEEEEec
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSEEG-VTVLVSQ   87 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~~g-~~~~~~~   87 (173)
                      ...+++++ +..++++..++.|..|+ .++ ...+........ .+++.+ ++++++++.....+..++... ...+...
T Consensus       106 ~i~~~~~~-~~~l~~~~~d~~i~~~d-~~~~~~~~~~~~~~v~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~  182 (313)
T 3odt_A          106 NVCSLSFQ-DGVVISGSWDKTAKVWK-EGSLVYNLQAHNASVW-DAKVVSFSENKFLTASADKTIKLWQNDKVIKTFSGI  182 (313)
T ss_dssp             CEEEEEEE-TTEEEEEETTSEEEEEE-TTEEEEEEECCSSCEE-EEEEEETTTTEEEEEETTSCEEEEETTEEEEEECSS
T ss_pred             CEEEEEec-CCEEEEEeCCCCEEEEc-CCcEEEecccCCCcee-EEEEccCCCCEEEEEECCCCEEEEecCceEEEEecc
Confidence            34556663 33455555888899998 443 333333444556 788877 778855555444454444322 3333211


Q ss_pred             cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCCEE
Q 030700           88 FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERFL  166 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~~l  166 (173)
                      .    ......++++|+|.++.+.                  .++.|..+|..+++...... .......++|+|+++ +
T Consensus       183 ~----~~~i~~~~~~~~~~~~~~~------------------~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~-l  239 (313)
T 3odt_A          183 H----NDVVRHLAVVDDGHFISCS------------------NDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLPNGD-I  239 (313)
T ss_dssp             C----SSCEEEEEEEETTEEEEEE------------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSC-E
T ss_pred             C----cccEEEEEEcCCCeEEEcc------------------CCCeEEEEECCchhhhhhhhcCCceEEEEEEecCCC-E
Confidence            1    2356789999999855443                  34789999988776544433 345568899999985 4


Q ss_pred             EEE
Q 030700          167 VVC  169 (173)
Q Consensus       167 yv~  169 (173)
                      +.+
T Consensus       240 ~~~  242 (313)
T 3odt_A          240 VSC  242 (313)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=97.95  E-value=0.00029  Score=58.47  Aligned_cols=150  Identities=9%  Similarity=0.056  Sum_probs=81.5

Q ss_pred             ceEEEcCCCC-EEEEcCC---------CeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           13 EDVSVDGNGV-LYTATGD---------GWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~~~---------~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      .+++++|+|. |.++..+         +.++.+|.. |+...+....+... ..+|+|||+.+.++ ..+.|+.++. .|
T Consensus        65 ~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~l~~~~~~~~-~~~~SPdG~~la~~-~~~~i~~~~~~~~  142 (740)
T 4a5s_A           65 NDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKRQLITEERIPNNTQ-WVTWSPVGHKLAYV-WNNDIYVKIEPNL  142 (740)
T ss_dssp             CEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCCTTEE-EEEECSSTTCEEEE-ETTEEEEESSTTS
T ss_pred             cceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCCcEEEcccCCCcce-eeEECCCCCEEEEE-ECCeEEEEECCCC
Confidence            3478899986 4444322         567788864 44444433344556 88999999864444 3456887775 44


Q ss_pred             -cEEEEeccCCcc----------------ccCCccEEEcCCCc-EEEEeCcCCcCcccc--------------eeee---
Q 030700           81 -VTVLVSQFNGSQ----------------LRFANDVIEASDGS-LYFTVSSTKFTPAEY--------------YLDL---  125 (173)
Q Consensus        81 -~~~~~~~~~~~~----------------~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~--------------~~~~---  125 (173)
                       ...+..  ++..                +.....+.++|||+ |.++.... .....+              ...+   
T Consensus       143 ~~~~lt~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~-~~v~~~~~~~~~~~~~~~~~~~~~~yp  219 (740)
T 4a5s_A          143 PSYRITW--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFND-TEVPLIEYSFYSDESLQYPKTVRVPYP  219 (740)
T ss_dssp             CCEECCS--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEEC-TTCCEEEEEECCSTTCSSCEEEEEECC
T ss_pred             ceEEEcC--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcc-cCCceEEEEeecCCCCCCCcceeecCC
Confidence             443321  1111                12335689999997 44432110 001100              0000   


Q ss_pred             cc--cCCCceEEEEcCCC---C---eeEEeec------cccCcceEEEccCCCEEE
Q 030700          126 VS--GEPHGVLLKYDPST---N---QTSLVLD------GLYFANGVALSEDERFLV  167 (173)
Q Consensus       126 ~~--~~~~~~v~~~d~~~---~---~~~~~~~------~~~~p~gi~~~~dg~~ly  167 (173)
                      ..  ..+..+|+.+|.++   +   ++..+..      .......++|+|||+.++
T Consensus       220 ~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~  275 (740)
T 4a5s_A          220 KAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISL  275 (740)
T ss_dssp             BTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEE
T ss_pred             CCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEE
Confidence            01  12234789999987   6   4444432      223345789999998443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=97.95  E-value=0.00044  Score=57.50  Aligned_cols=110  Identities=11%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             cceEEEcCCCCEEE-EcCCCeEEEEcCC-CcEEEeccc----cCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEE
Q 030700           12 PEDVSVDGNGVLYT-ATGDGWIKRMHPN-GTWEDWHQV----GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTV   83 (173)
Q Consensus        12 p~~l~~~~~g~l~~-~~~~~~i~~~~~~-g~~~~~~~~----~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~   83 (173)
                      ..+++.|++|.||+ +...+.|+++++. ++...+...    ...+. ++..|.+|++ |++.. .|+.++++. + .+.
T Consensus       474 i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~-~i~~d~~g~l-Wigt~-~Gl~~~~~~~~~~~~  550 (758)
T 3ott_A          474 INQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPN-YLLCDEDGLL-WVGFH-GGVMRINPKDESQQS  550 (758)
T ss_dssp             EEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEE-EEEECTTSCE-EEEET-TEEEEECC--CCCCB
T ss_pred             eeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccc-eEEECCCCCE-EEEec-CceEEEecCCCceEE
Confidence            56788899999998 3334669999975 444444211    12456 8888999999 88764 589999864 4 433


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      +.  ..+.+...+..+..+ +|++|++..                   ..|.++++++.+...
T Consensus       551 ~~--~~gl~~~~i~~i~~~-~g~lWi~t~-------------------~Gl~~~~~~~~~~~~  591 (758)
T 3ott_A          551 IS--FGSFSNNEILSMTCV-KNSIWVSTT-------------------NGLWIIDRKTMDARQ  591 (758)
T ss_dssp             CC--CCC---CCEEEEEEE-TTEEEEEES-------------------SCEEEEETTTCCEEE
T ss_pred             ec--ccCCCccceEEEEEC-CCCEEEECC-------------------CCeEEEcCCCceeEE
Confidence            31  123333455667665 899999853                   368888888765543

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=97.94  E-value=0.0011  Score=48.62  Aligned_cols=141  Identities=12%  Similarity=0.044  Sum_probs=77.2

Q ss_pred             CCcceEEEcCC--CCEEE-EcCCCeEEEEcCC-Cc---EEEeccccCccccceEEccC-------------CcEEEEEeC
Q 030700           10 NHPEDVSVDGN--GVLYT-ATGDGWIKRMHPN-GT---WEDWHQVGSQSLLGLTTTKE-------------NNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~--g~l~~-~~~~~~i~~~~~~-g~---~~~~~~~~~~p~~gl~~~~~-------------g~l~~v~~~   69 (173)
                      ....++++.|+  |.+++ +..++.|..|+.. +.   ...+........ .++++++             +++|+.+..
T Consensus       100 ~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~-~~~~~p~~~~~~~~~~~~~~~~~l~sgs~  178 (297)
T 2pm7_B          100 ASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVN-SASWAPATIEEDGEHNGTKESRKFVTGGA  178 (297)
T ss_dssp             SCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEE-EEEECCCC------------CCEEEEEET
T ss_pred             CceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccc-eEeecCCcccccccCCCCCCcceEEEEcC
Confidence            34568999985  76554 4488888888853 21   122223333455 7888876             456344443


Q ss_pred             CCeEEEEcc-CC-c-EEEEeccCCccccCCccEEEcCCC---cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           70 QQGLLKVSE-EG-V-TVLVSQFNGSQLRFANDVIEASDG---SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        70 ~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~~~l~~~~dG---~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      ...+...+. .+ . ..+...+.+.. .....++++|++   .++++-                 ..++.|..+|.++..
T Consensus       179 D~~v~lwd~~~~~~~~~~~~~l~~H~-~~V~~v~~sp~~~~~~~las~-----------------s~D~~v~iWd~~~~~  240 (297)
T 2pm7_B          179 DNLVKIWKYNSDAQTYVLESTLEGHS-DWVRDVAWSPTVLLRSYMASV-----------------SQDRTCIIWTQDNEQ  240 (297)
T ss_dssp             TSCEEEEEEETTTTEEEEEEEECCCS-SCEEEEEECCCCSSSEEEEEE-----------------ETTSCEEEEEESSTT
T ss_pred             CCcEEEEEEcCCCceEEEEEEecCCC-CceEEEEECCCCCCceEEEEE-----------------ECCCcEEEEEeCCCC
Confidence            333444442 33 1 11222222211 356889999985   555552                 134667777665421


Q ss_pred             ---eEEee--cc-ccCcceEEEccCCCEEEEE
Q 030700          144 ---TSLVL--DG-LYFANGVALSEDERFLVVC  169 (173)
Q Consensus       144 ---~~~~~--~~-~~~p~gi~~~~dg~~lyv~  169 (173)
                         .....  .. ......++|+|+++.|..+
T Consensus       241 ~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~  272 (297)
T 2pm7_B          241 GPWKKTLLKEEKFPDVLWRASWSLSGNVLALS  272 (297)
T ss_dssp             SCCEEEESSSSCCSSCEEEEEECSSSCCEEEE
T ss_pred             CccceeeeecccCCCcEEEEEECCCCCEEEEE
Confidence               11222  11 2345689999999877655

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=97.94  E-value=0.00033  Score=58.34  Aligned_cols=138  Identities=14%  Similarity=0.116  Sum_probs=80.2

Q ss_pred             ecCCccCCcceEEEcCCCCEE-EEcCCCeEEEEcCCC---cEE-EeccccCccccceEEccC--CcEEEEEeCCCeEEEE
Q 030700            4 LGEGIVNHPEDVSVDGNGVLY-TATGDGWIKRMHPNG---TWE-DWHQVGSQSLLGLTTTKE--NNVIIVCDSQQGLLKV   76 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~-~~~~~~~i~~~~~~g---~~~-~~~~~~~~p~~gl~~~~~--g~l~~v~~~~~~i~~~   76 (173)
                      +..+--....+++++|+|.++ .+..++.|..|+..+   ... .+........ +++++++  +++++.+.....+...
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVW-RVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEE-EEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceE-EEEecCCCCCCEEEEEeCCCeEEEE
Confidence            334444567789999988644 555889999888542   222 2223344566 8999877  8884555444445555


Q ss_pred             cc-CC-cEEEEeccCCccccCCccEEEcCC--CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe---eEEeec
Q 030700           77 SE-EG-VTVLVSQFNGSQLRFANDVIEASD--GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ---TSLVLD  149 (173)
Q Consensus        77 ~~-~g-~~~~~~~~~~~~~~~~~~l~~~~d--G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~---~~~~~~  149 (173)
                      +. ++ ....... .+. ......++++|+  |.++++-                 ..++.|..+|..++.   ......
T Consensus        83 d~~~~~~~~~~~~-~~h-~~~V~~v~~sp~~~~~~l~sg-----------------s~dg~I~vwdl~~~~~~~~~~~~~  143 (753)
T 3jro_A           83 KEENGRWSQIAVH-AVH-SASVNSVQWAPHEYGPLLLVA-----------------SSDGKVSVVEFKENGTTSPIIIDA  143 (753)
T ss_dssp             EEETTEEEEEEEE-CCC-SSCEEEEEECCGGGCSEEEEE-----------------ETTSEEEEEECCSSSCCCCEEEEC
T ss_pred             ECCCCcccccccc-cCC-CCCeEEEEECCCCCCCEEEEE-----------------eCCCcEEEEEeecCCCcceeEeec
Confidence            53 44 2222221 111 135678999998  8766652                 234788888876552   222223


Q ss_pred             cccCcceEEEcc
Q 030700          150 GLYFANGVALSE  161 (173)
Q Consensus       150 ~~~~p~gi~~~~  161 (173)
                      .......++|+|
T Consensus       144 ~~~~v~~l~~~p  155 (753)
T 3jro_A          144 HAIGVNSASWAP  155 (753)
T ss_dssp             CSSCEEEEEECC
T ss_pred             CCCceEEEEecC
Confidence            344557788888

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=97.93  E-value=4.2e-05  Score=61.51  Aligned_cols=60  Identities=18%  Similarity=0.396  Sum_probs=49.0

Q ss_pred             ccCCcceEEEcCCCCEEE-EcC------------CCeEEEEcC-CCcEEEeccc--cCccccceEEccCCcEEEEEe
Q 030700            8 IVNHPEDVSVDGNGVLYT-ATG------------DGWIKRMHP-NGTWEDWHQV--GSQSLLGLTTTKENNVIIVCD   68 (173)
Q Consensus         8 ~~~~p~~l~~~~~g~l~~-~~~------------~~~i~~~~~-~g~~~~~~~~--~~~p~~gl~~~~~g~l~~v~~   68 (173)
                      .+..|.+|+++++|.||| +|.            +..++++++ +|++..+...  ...|+ |++|+||++.|||+.
T Consensus       474 ~fnsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpn-GiafSPD~ktLfV~v  549 (592)
T 4a9v_A          474 MFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCCCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEEE
T ss_pred             ccCCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCcccc-CCEECCCCCEEEEEE
Confidence            589999999999999999 663            127999997 6787776543  35689 999999999989875

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.91  E-value=0.00044  Score=52.54  Aligned_cols=132  Identities=8%  Similarity=0.091  Sum_probs=76.5

Q ss_pred             CCCEEE-EcCCCeEEEEcCCCcEEEeccccCccccceEEccC----C---cEEEEEeCC--C-e--EEEEcc-CC-cEEE
Q 030700           20 NGVLYT-ATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKE----N---NVIIVCDSQ--Q-G--LLKVSE-EG-VTVL   84 (173)
Q Consensus        20 ~g~l~~-~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~----g---~l~~v~~~~--~-~--i~~~~~-~g-~~~~   84 (173)
                      ...+++ ++..+.++.+|.+|+.....+. +.++ ++.+-++    |   .++|+++..  . .  ++.+++ .+ +..+
T Consensus        39 ~~s~ii~t~k~~gL~Vydl~G~~l~~~~~-g~~n-nVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i  116 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSLDGKMLHSYNT-GKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSM  116 (355)
T ss_dssp             GGCEEEEEETTTEEEEEETTSCEEEEECC-SCEE-EEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEEC
T ss_pred             CccEEEEEcCCCCEEEEcCCCcEEEEccC-CCcc-cEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeec
Confidence            345554 5577889999999987766443 5666 6666542    1   155888876  4 3  344454 33 3333


Q ss_pred             Eec--cCCccccCCccEEE--cCC-Cc--EEEEeCcCCcCcccceeeecccCCCceEEEEcC---CCCe--eEEe--ecc
Q 030700           85 VSQ--FNGSQLRFANDVIE--ASD-GS--LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDP---STNQ--TSLV--LDG  150 (173)
Q Consensus        85 ~~~--~~~~~~~~~~~l~~--~~d-G~--~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~---~~~~--~~~~--~~~  150 (173)
                      ...  .-+.....|.++++  +++ |.  +|+++..                  +++..|..   ..+.  .+++  ...
T Consensus       117 ~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~------------------G~~~q~~l~~~~~g~~~~~lVR~f~l  178 (355)
T 3amr_A          117 TDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKE------------------GEFEQYELKADKNGYISGKKVRAFKM  178 (355)
T ss_dssp             SCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSS------------------SEEEEEEEEECTTSCEEEEEEEEEEC
T ss_pred             cccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCC------------------CeEEEEEEEeCCCCcccceEEEEecC
Confidence            221  00122368999999  774 54  5555422                  44443222   2231  1222  122


Q ss_pred             ccCcceEEEccCCCEEEEEec
Q 030700          151 LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...|.|++++++..+|||++=
T Consensus       179 gsq~EgcvvDd~~g~Lyv~eE  199 (355)
T 3amr_A          179 NSQTEGMAADDEYGRLYIAEE  199 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEET
T ss_pred             CCCcceEEEcCCCCeEEEecc
Confidence            467889999999899999873

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=97.91  E-value=0.00041  Score=51.51  Aligned_cols=114  Identities=11%  Similarity=0.060  Sum_probs=70.2

Q ss_pred             CCcceEEEcCC----CCEE-EEcCCCeEEEEcC-CCcEEE-eccccCccccceEEcc-CCcEEEEEeCCCeEEEEcc-CC
Q 030700           10 NHPEDVSVDGN----GVLY-TATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTK-ENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~----g~l~-~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~-~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ....+++|.|+    |.++ ++..++.|..|+. +++... +........ .+++++ ++++++.+.....+..++. ++
T Consensus        70 ~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~  148 (366)
T 3k26_A           70 ENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITMQCIKHYVGHGNAIN-ELKFHPRDPNLLLSVSKDHALRLWNIQTD  148 (366)
T ss_dssp             CCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTCCEEEEEESCCSCEE-EEEECSSCTTEEEEEETTSCEEEEETTTT
T ss_pred             CcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhceEeeeecCCCCcEE-EEEECCCCCCEEEEEeCCCeEEEEEeecC
Confidence            34677899887    5455 4558899999995 455433 333455667 999999 8888555554444555564 44


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                       .........+ ....+..++++|+|..+++-.                 .++.|..+|..++
T Consensus       149 ~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-----------------~dg~i~i~d~~~~  193 (366)
T 3k26_A          149 TLVAIFGGVEG-HRDEVLSADYDLLGEKIMSCG-----------------MDHSLKLWRINSK  193 (366)
T ss_dssp             EEEEEECSTTS-CSSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESCSH
T ss_pred             eEEEEeccccc-ccCceeEEEECCCCCEEEEec-----------------CCCCEEEEECCCC
Confidence             2222211111 113578899999998666532                 2367777777654

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.91  E-value=0.00037  Score=57.50  Aligned_cols=141  Identities=10%  Similarity=0.042  Sum_probs=78.5

Q ss_pred             cceEEEcCCCCEE-EE-cCCC----eEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC-------------
Q 030700           12 PEDVSVDGNGVLY-TA-TGDG----WIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-------------   71 (173)
Q Consensus        12 p~~l~~~~~g~l~-~~-~~~~----~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-------------   71 (173)
                      ..+++|+|+|+.. ++ +..|    .|+.++.+ |+............ ++++++||+.|+++....             
T Consensus       127 ~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~  205 (710)
T 2xdw_A          127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (710)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             EEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcccc-eEEEEeCCCEEEEEEECCccccccccccccC
Confidence            4578999998633 33 3222    78889864 44443222222245 799999998766664332             


Q ss_pred             ---eEEEEcc-CC-c--EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC--
Q 030700           72 ---GLLKVSE-EG-V--TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST--  141 (173)
Q Consensus        72 ---~i~~~~~-~g-~--~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~--  141 (173)
                         .|++++. .+ .  ..+..... .+ ....++.++|||+ ++++....             ......|+.+|.++  
T Consensus       206 ~~~~v~~~~l~t~~~~~~~v~~~~~-~~-~~~~~~~~SpDg~~l~~~~~~~-------------~~~~~~l~~~d~~~~~  270 (710)
T 2xdw_A          206 LHQKLYYHVLGTDQSEDILCAEFPD-EP-KWMGGAELSDDGRYVLLSIREG-------------CDPVNRLWYCDLQQES  270 (710)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTT-CT-TCEEEEEECTTSCEEEEEEECS-------------SSSCCEEEEEEGGGSS
T ss_pred             CCCEEEEEECCCCcccceEEeccCC-CC-eEEEEEEEcCCCCEEEEEEEcc-------------CCCccEEEEEECcccc
Confidence               2666664 33 2  22222111 01 2345789999997 44442110             01135788888765  


Q ss_pred             ----C--eeEEeeccccCcceEEEccCCCEEEEE
Q 030700          142 ----N--QTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       142 ----~--~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                          +  ....+....... .-.|++||+.||+.
T Consensus       271 ~~~~~~~~~~~l~~~~~~~-~~~~s~dg~~l~~~  303 (710)
T 2xdw_A          271 NGITGILKWVKLIDNFEGE-YDYVTNEGTVFTFK  303 (710)
T ss_dssp             SSSCSSCCCEEEECSSSSC-EEEEEEETTEEEEE
T ss_pred             cccCCccceEEeeCCCCcE-EEEEeccCCEEEEE
Confidence                4  345554433222 23578888888775

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.88  E-value=0.00035  Score=52.72  Aligned_cols=148  Identities=12%  Similarity=0.100  Sum_probs=79.2

Q ss_pred             cceEEEcCCCC-EEEE-cC--CCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEE
Q 030700           12 PEDVSVDGNGV-LYTA-TG--DGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVL   84 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~-~~--~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~   84 (173)
                      ...++++|+|+ |++. +.  ...|+.++.++ +...+.........++.+++||+.|+++.....++.++.+ + ...+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~  117 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQVI  117 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEEE
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEEE
Confidence            56788999985 4444 32  34688888654 4444433333323147899999886666555568888864 4 4444


Q ss_pred             EeccCCccccCCccEEEcCCCcEE-EEeCc---------CCcCcccceeeec---ccCCCceEEEEcCCCCeeEEeeccc
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLY-FTVSS---------TKFTPAEYYLDLV---SGEPHGVLLKYDPSTNQTSLVLDGL  151 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~-v~~~~---------~~~~~~~~~~~~~---~~~~~~~v~~~d~~~~~~~~~~~~~  151 (173)
                      .....+          ..++|..+ ++...         ..+.+......+.   .......|+.+|.++++...+....
T Consensus       118 ~~~~~~----------~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~~  187 (396)
T 3c5m_A          118 YTVDEE----------WKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQDT  187 (396)
T ss_dssp             EECCTT----------EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEES
T ss_pred             Eecccc----------cCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccCC
Confidence            331111          12222211 11000         0000000000000   0124468999999888877666555


Q ss_pred             cCcceEEEcc-CCCEEEEE
Q 030700          152 YFANGVALSE-DERFLVVC  169 (173)
Q Consensus       152 ~~p~gi~~~~-dg~~lyv~  169 (173)
                      .....++|+| |++.|+++
T Consensus       188 ~~~~~~~~sp~dg~~l~~~  206 (396)
T 3c5m_A          188 AWLGHPIYRPFDDSTVGFC  206 (396)
T ss_dssp             SCEEEEEEETTEEEEEEEE
T ss_pred             cccccceECCCCCCEEEEE
Confidence            5567889999 77755543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=97.87  E-value=0.00074  Score=51.88  Aligned_cols=139  Identities=7%  Similarity=0.058  Sum_probs=79.1

Q ss_pred             CCcceEEEcCCCCEEE-EcCCCeEEEEcC----CCcEEEec-----------c--ccCccccceE--EccCCcEEEEEeC
Q 030700           10 NHPEDVSVDGNGVLYT-ATGDGWIKRMHP----NGTWEDWH-----------Q--VGSQSLLGLT--TTKENNVIIVCDS   69 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~-~~~~~~i~~~~~----~g~~~~~~-----------~--~~~~p~~gl~--~~~~g~l~~v~~~   69 (173)
                      ....++++.|++.+++ +..++.|..|+.    +++.....           +  ...... .+.  +++++++++.+..
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~  190 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAV-RMRAFVNEEKSLLVALTN  190 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEE-EEEEEECSSCEEEEEEET
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCce-EEEEEEcCCCCEEEEEeC
Confidence            3467899999886554 448888888874    44332211           1  112223 344  4467888555554


Q ss_pred             CCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           70 QQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        70 ~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                      ...+..++. .+  ...+....   .......++++|+|.++++-                 ..++.|..+|..+++...
T Consensus       191 d~~i~iwd~~~~~~~~~~~~~~---h~~~v~~~~~s~~~~~l~s~-----------------~~dg~i~iwd~~~~~~~~  250 (437)
T 3gre_A          191 LSRVIIFDIRTLERLQIIENSP---RHGAVSSICIDEECCVLILG-----------------TTRGIIDIWDIRFNVLIR  250 (437)
T ss_dssp             TSEEEEEETTTCCEEEEEECCG---GGCCEEEEEECTTSCEEEEE-----------------ETTSCEEEEETTTTEEEE
T ss_pred             CCeEEEEeCCCCeeeEEEccCC---CCCceEEEEECCCCCEEEEE-----------------cCCCeEEEEEcCCccEEE
Confidence            445555554 44  33332210   11367889999999876653                 234788889988776544


Q ss_pred             ee--ccccCcceEEEc----cCCCEEEEE
Q 030700          147 VL--DGLYFANGVALS----EDERFLVVC  169 (173)
Q Consensus       147 ~~--~~~~~p~gi~~~----~dg~~lyv~  169 (173)
                      ..  ........++++    ++++.|+.+
T Consensus       251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~  279 (437)
T 3gre_A          251 SWSFGDHAPITHVEVCQFYGKNSVIVVGG  279 (437)
T ss_dssp             EEBCTTCEEEEEEEECTTTCTTEEEEEEE
T ss_pred             EEecCCCCceEEEEeccccCCCccEEEEE
Confidence            33  223344567444    456555543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=97.82  E-value=0.00064  Score=50.55  Aligned_cols=145  Identities=8%  Similarity=-0.028  Sum_probs=80.5

Q ss_pred             CCcceEEEcCCC-CEEEEc---------CCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeC-C----CeE
Q 030700           10 NHPEDVSVDGNG-VLYTAT---------GDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q----QGL   73 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~---------~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~----~~i   73 (173)
                      ..+.++++  +| .+++..         ....|+.++.++ +...+    .... .++++|||+.|+++.. .    ..+
T Consensus        15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l----~~~~-~~~~SpDg~~la~~~~~~~~~~~~l   87 (347)
T 2gop_A           15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI----ENAT-MPRISPDGKKIAFMRANEEKKVSEI   87 (347)
T ss_dssp             CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE----ESCE-EEEECTTSSEEEEEEEETTTTEEEE
T ss_pred             EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc----ccCC-CeEECCCCCEEEEEEeccCCCcceE
Confidence            44566777  55 444331         145688888654 44433    3456 7899999976554432 1    237


Q ss_pred             EEEccC-C-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccc-eeee--------cccCCCceEEEEcCCC
Q 030700           74 LKVSEE-G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEY-YLDL--------VSGEPHGVLLKYDPST  141 (173)
Q Consensus        74 ~~~~~~-g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~-~~~~--------~~~~~~~~v~~~d~~~  141 (173)
                      +.++.+ | ...+... .    . ...++++|||+ |+++.....-..... ...+        ........|+++|.++
T Consensus        88 ~~~~~~~g~~~~l~~~-~----~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~  161 (347)
T 2gop_A           88 WVADLETLSSKKILEA-K----N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTES  161 (347)
T ss_dssp             EEEETTTTEEEEEEEE-S----E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTT
T ss_pred             EEEECCCCceEEEEcC-C----C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCC
Confidence            777754 4 4443322 1    1 57789999996 555531100000000 0000        0001135899999988


Q ss_pred             Cee-EEeeccccCcceEEEccCCCEEEEEe
Q 030700          142 NQT-SLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       142 ~~~-~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ++. +.+.. . ....++|+||| .+|++.
T Consensus       162 ~~~~~~l~~-~-~~~~~~~spdg-~~~~~~  188 (347)
T 2gop_A          162 EEVIEEFEK-P-RFSSGIWHRDK-IVVNVP  188 (347)
T ss_dssp             TEEEEEEEE-E-TTCEEEEETTE-EEEEEE
T ss_pred             CeEEeeecC-C-CcccccCCCCe-EEEEEe
Confidence            877 55544 2 66789999999 777663

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.76  E-value=0.0038  Score=48.30  Aligned_cols=141  Identities=13%  Similarity=0.119  Sum_probs=81.7

Q ss_pred             cCCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEc--cCCcEEEEEeCCCeEEEEcc-CC--c
Q 030700            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTT--KENNVIIVCDSQQGLLKVSE-EG--V   81 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~--~~g~l~~v~~~~~~i~~~~~-~g--~   81 (173)
                      -....++++.+++.++.+..++.|..|+. +++.. .+........ .+++.  +++++++.+.....+...+. .+  .
T Consensus       162 ~~~V~~l~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~  240 (464)
T 3v7d_B          162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVR-CLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSV  240 (464)
T ss_dssp             SSCEEEEEECSTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEEESSSCEEEEEEETTSCEEEEECCCCCCC
T ss_pred             CcCEEEEEEcCCCEEEEEeCCCCEEEEECCCCcEEEEECCCCCccE-EEEEecCCCCCEEEEEcCCCcEEEeeCCCCccc
Confidence            34567889988886666668899999985 45433 3333344555 78887  56777455544444554443 22  1


Q ss_pred             EEEE-------------------eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           82 TVLV-------------------SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        82 ~~~~-------------------~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      ....                   ....+   ....-..++++|.++++                 ...++.|..+|..++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~~~~l~~-----------------~~~d~~i~vwd~~~~  300 (464)
T 3v7d_B          241 PDHGEEHDYPLVFHTPEENPYFVGVLRG---HMASVRTVSGHGNIVVS-----------------GSYDNTLIVWDVAQM  300 (464)
T ss_dssp             ------CCSSEEESCGGGCTTEEEEECC---CSSCEEEEEEETTEEEE-----------------EETTSCEEEEETTTT
T ss_pred             ccccccCCcceEeeccCCCeEEEEEccC---ccceEEEEcCCCCEEEE-----------------EeCCCeEEEEECCCC
Confidence            1110                   00000   11112234555554444                 224578999998877


Q ss_pred             eeEEeecc-ccCcceEEEccCCCEEEEEe
Q 030700          143 QTSLVLDG-LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       143 ~~~~~~~~-~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +......+ ......++|+|+++.++.+.
T Consensus       301 ~~~~~~~~~~~~v~~~~~~~~~~~l~sg~  329 (464)
T 3v7d_B          301 KCLYILSGHTDRIYSTIYDHERKRCISAS  329 (464)
T ss_dssp             EEEEEECCCSSCEEEEEEETTTTEEEEEE
T ss_pred             cEEEEecCCCCCEEEEEEcCCCCEEEEEe
Confidence            65544443 45567899999999887764

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.68  E-value=0.0026  Score=47.88  Aligned_cols=81  Identities=14%  Similarity=0.128  Sum_probs=47.6

Q ss_pred             cCCCeEEEEcCCC-c-----------------EEEeccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CC--cEEE
Q 030700           27 TGDGWIKRMHPNG-T-----------------WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG--VTVL   84 (173)
Q Consensus        27 ~~~~~i~~~~~~g-~-----------------~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g--~~~~   84 (173)
                      ..+|.|..||... +                 ...+........ .++|+++|++|+.+.....++++ +. ++  ...+
T Consensus       156 ~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~-~~~~s~~g~~l~s~s~d~~~v~iwd~~~~~~~~~~  234 (355)
T 3vu4_A          156 FNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIK-MVRLNRKSDMVATCSQDGTIIRVFKTEDGVLVREF  234 (355)
T ss_dssp             SCTTCEEEEECCC------------------CCEEECCCSSCEE-EEEECTTSSEEEEEETTCSEEEEEETTTCCEEEEE
T ss_pred             CcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceE-EEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence            3667788887532 2                 233333445567 99999999994444444332554 43 45  3333


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEe
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      .....   ......++++|+|+++++.
T Consensus       235 ~~g~h---~~~v~~~~~s~~~~~l~s~  258 (355)
T 3vu4_A          235 RRGLD---RADVVDMKWSTDGSKLAVV  258 (355)
T ss_dssp             ECTTC---CSCEEEEEECTTSCEEEEE
T ss_pred             EcCCC---CCcEEEEEECCCCCEEEEE
Confidence            21101   1356889999999877763

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.67  E-value=0.00091  Score=49.51  Aligned_cols=98  Identities=17%  Similarity=0.166  Sum_probs=57.9

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcE---EEeccccCccccceEEcc--CCcEEEEEeCCCeEEEEcc-CC-
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTW---EDWHQVGSQSLLGLTTTK--ENNVIIVCDSQQGLLKVSE-EG-   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~---~~~~~~~~~p~~gl~~~~--~g~l~~v~~~~~~i~~~~~-~g-   80 (173)
                      ....+++++++|.++++. .++.|..|+. +++.   ..+........ .++|++  ++++|+.+.....+...+. .+ 
T Consensus        14 ~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~-~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~   92 (316)
T 3bg1_A           14 DMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVW-QVAWAHPMYGNILASCSYDRKVIIWREENGT   92 (316)
T ss_dssp             CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEE-EEEECCGGGSSCEEEEETTSCEEEECCSSSC
T ss_pred             CeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEE-EEEeCCCCCCCEEEEEECCCEEEEEECCCCc
Confidence            445789999998766555 7888888885 3432   22333344566 899975  4777455544444444453 44 


Q ss_pred             cEEEEeccCCccccCCccEEEcCC--CcEEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASD--GSLYFT  110 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~d--G~~~v~  110 (173)
                      ...... ..+. ....+.++++|+  |.++++
T Consensus        93 ~~~~~~-~~~h-~~~V~~v~~~p~~~g~~las  122 (316)
T 3bg1_A           93 WEKSHE-HAGH-DSSVNSVCWAPHDYGLILAC  122 (316)
T ss_dssp             CCEEEE-ECCC-SSCCCEEEECCTTTCSCEEE
T ss_pred             ceEEEE-ccCC-CCceEEEEECCCCCCcEEEE
Confidence            222221 1111 135788999997  666665

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=97.65  E-value=0.0021  Score=48.60  Aligned_cols=100  Identities=15%  Similarity=0.223  Sum_probs=63.4

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEeccCCccccCC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLRFA   96 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~   96 (173)
                      ++.+|++..++.++.+|+ +|+.. |........ ++..+ ++++ |++.....++.++. +| ...........   ..
T Consensus       239 ~~~v~~~~~~g~l~~~d~~tG~~~-w~~~~~~~~-~~~~~-~~~l-~~~~~~g~l~~~d~~tG~~~w~~~~~~~~---~~  311 (376)
T 3q7m_A          239 NGVVFALAYNGNLTALDLRSGQIM-WKRELGSVN-DFIVD-GNRI-YLVDQNDRVMALTIDGGVTLWTQSDLLHR---LL  311 (376)
T ss_dssp             TTEEEEECTTSCEEEEETTTCCEE-EEECCCCEE-EEEEE-TTEE-EEEETTCCEEEEETTTCCEEEEECTTTTS---CC
T ss_pred             CCEEEEEecCcEEEEEECCCCcEE-eeccCCCCC-CceEE-CCEE-EEEcCCCeEEEEECCCCcEEEeecccCCC---cc
Confidence            678999887889999996 56543 322233344 56554 5566 88877778999995 67 33322212111   22


Q ss_pred             ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           97 NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        97 ~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      ....+. +|.+|+++.                  +|.|+.+|+++|+..
T Consensus       312 ~~~~~~-~~~l~v~~~------------------~g~l~~~d~~tG~~~  341 (376)
T 3q7m_A          312 TSPVLY-NGNLVVGDS------------------EGYLHWINVEDGRFV  341 (376)
T ss_dssp             CCCEEE-TTEEEEECT------------------TSEEEEEETTTCCEE
T ss_pred             cCCEEE-CCEEEEEeC------------------CCeEEEEECCCCcEE
Confidence            233443 578999853                  378999999888753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.64  E-value=0.0052  Score=47.48  Aligned_cols=129  Identities=9%  Similarity=0.055  Sum_probs=75.9

Q ss_pred             EcCCCC-EEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEEeccCC
Q 030700           17 VDGNGV-LYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLVSQFNG   90 (173)
Q Consensus        17 ~~~~g~-l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~~~~~~   90 (173)
                      +.+++. ++++..++.|..||. +++.. .+........ .+++++++++++.+.....+..++. ++  ...+. ... 
T Consensus       276 ~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~-  352 (464)
T 3v7d_B          276 VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY-STIYDHERKRCISASMDTTIRIWDLENGELMYTLQ-GHT-  352 (464)
T ss_dssp             EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEETTTTEEEEEETTSCEEEEETTTTEEEEEEC-CCS-
T ss_pred             EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEE-EEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEe-CCC-
Confidence            345555 445558889999985 44433 3333445567 8999999998555554444555554 55  23321 111 


Q ss_pred             ccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           91 SQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        91 ~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                         .....+.++  +..+++-                 ..++.|..+|..++..............++|+++++.+..+.
T Consensus       353 ---~~v~~~~~~--~~~l~s~-----------------s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  410 (464)
T 3v7d_B          353 ---ALVGLLRLS--DKFLVSA-----------------AADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS  410 (464)
T ss_dssp             ---SCEEEEEEC--SSEEEEE-----------------ETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE
T ss_pred             ---CcEEEEEEc--CCEEEEE-----------------eCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec
Confidence               234556665  4444442                 134788888887665444443344456678888888766553

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.63  E-value=0.0015  Score=46.55  Aligned_cols=94  Identities=14%  Similarity=0.033  Sum_probs=61.9

Q ss_pred             ccccceEEccCCcEEEEEeCCCeEEEEcc-CC--------cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCccc
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAE  120 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~  120 (173)
                      ... .++|+|+|+| |+. ....++++++ ++        .+.+...  +.  +....+.+|++|.||++.         
T Consensus        42 ~~~-~laf~P~G~L-YaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~--Gw--~~F~a~~fD~~G~LYav~---------  105 (236)
T 1tl2_A           42 NFK-FLFLSPGGEL-YGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNG--GW--NQFQFLFFDPNGYLYAVS---------  105 (236)
T ss_dssp             TCS-EEEECTTSCE-EEE-ETTEEEEESCCCSTTCCHHHHCEEEECS--CG--GGCSEEEECTTSCEEEEE---------
T ss_pred             cce-eEEECCCccE-EEE-eCCeEEEECCCCCCcccccccccEeccc--cc--ccceEEEECCCCCEEEeC---------
Confidence            456 8999999998 987 4446888885 42        2333221  11  235779999999999982         


Q ss_pred             ceeeecccCCCceEEEEcCCCCee-------EEee-ccccCcceEEEccCCCEEEEEe
Q 030700          121 YYLDLVSGEPHGVLLKYDPSTNQT-------SLVL-DGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       121 ~~~~~~~~~~~~~v~~~d~~~~~~-------~~~~-~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                                +|.|+|+++.+...       .++. .+...-.-|.++|+|. ||...
T Consensus       106 ----------dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~-Lyav~  152 (236)
T 1tl2_A          106 ----------KDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY-LYAVH  152 (236)
T ss_dssp             ----------TTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC-EEEEE
T ss_pred             ----------CCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce-EEEEe
Confidence                      27999999843211       2222 2334446789999996 77654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.59  E-value=0.0028  Score=52.11  Aligned_cols=140  Identities=11%  Similarity=0.047  Sum_probs=75.3

Q ss_pred             cceEEEcCCCCEE--EEcC----CCeEEEEcCCC-cEEEeccccCc-cccceEEccCCcEEEEEeCCC------------
Q 030700           12 PEDVSVDGNGVLY--TATG----DGWIKRMHPNG-TWEDWHQVGSQ-SLLGLTTTKENNVIIVCDSQQ------------   71 (173)
Q Consensus        12 p~~l~~~~~g~l~--~~~~----~~~i~~~~~~g-~~~~~~~~~~~-p~~gl~~~~~g~l~~v~~~~~------------   71 (173)
                      ..+++|+|+|+..  ..+.    ...|+.++.++ +.......... .. +++|++||+.|+++....            
T Consensus       123 ~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~~-~~~wspDg~~l~~~~~d~~~~~~~~~~~~~  201 (695)
T 2bkl_A          123 LGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKYA-TPKWTPDSKGFYYEWLPTDPSIKVDERPGY  201 (695)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTTC-CCEECTTSSEEEEEECCCCTTSCGGGGGGG
T ss_pred             EEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCccccc-ceEEecCCCEEEEEEecCCCCCccccCCCC
Confidence            4578999999644  3332    24688998654 43301111112 26 899999998756654322            


Q ss_pred             -eEEEEcc-CC-c-EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE
Q 030700           72 -GLLKVSE-EG-V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL  146 (173)
Q Consensus        72 -~i~~~~~-~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~  146 (173)
                       .|++++. .+ . ..+.-...+.+ ....++.++|||+ ++++....              .....|+.++..+++.+.
T Consensus       202 ~~v~~~~l~t~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~--------------~~~~~l~~~~~~~~~~~~  266 (695)
T 2bkl_A          202 TTIRYHTLGTEPSKDTVVHERTGDP-TTFLQSDLSRDGKYLFVYILRG--------------WSENDVYWKRPGEKDFRL  266 (695)
T ss_dssp             CEEEEEETTSCGGGCEEEECCCCCT-TCEEEEEECTTSCCEEEEEEET--------------TTEEEEEEECTTCSSCEE
T ss_pred             CEEEEEECCCCchhceEEEecCCCC-EEEEEEEECCCCCEEEEEEeCC--------------CCceEEEEEcCCCCceEE
Confidence             2777764 33 2 22221111111 2345789999996 54443210              022478888776666666


Q ss_pred             eeccccCcceEEEccCCCEEEEE
Q 030700          147 VLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      +...........+ ++|+ +|+.
T Consensus       267 l~~~~~~~~~~~~-~~g~-l~~~  287 (695)
T 2bkl_A          267 LVKGVGAKYEVHA-WKDR-FYVL  287 (695)
T ss_dssp             EEECSSCCEEEEE-ETTE-EEEE
T ss_pred             eecCCCceEEEEe-cCCc-EEEE
Confidence            6554433334444 5666 5553

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=97.59  E-value=0.012  Score=44.11  Aligned_cols=154  Identities=8%  Similarity=-0.025  Sum_probs=78.7

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CC--cEEEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EG--VTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g--~~~~~   85 (173)
                      ....+++|+|+|.++++..+..+..|+.+.............. .+++.++++.+.++....+ +..++. ++  ...+.
T Consensus        20 ~~V~~v~fs~dg~~la~g~~~~~~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~   98 (355)
T 3vu4_A           20 NPVTDYEFNQDQSCLILSTLKSFEIYNVHPVAHIMSQEMRHLS-KVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIK   98 (355)
T ss_dssp             CCCCEEEECTTSSEEEEECSSEEEEEEETTEEEEEEEECSCCC-EEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEE
T ss_pred             CceEEEEECCCCCEEEEEcCCEEEEEecCCcceeeeeecCCeE-EEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEE
Confidence            4567899999998887665555666764432222212222344 5677777777455544443 444453 45  22221


Q ss_pred             eccCCccccCCccEEEcC-------CCcEEEEeCcCC-cCcccc-----------eeeecc-cCCCceEEEEcCCCCe--
Q 030700           86 SQFNGSQLRFANDVIEAS-------DGSLYFTVSSTK-FTPAEY-----------YLDLVS-GEPHGVLLKYDPSTNQ--  143 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~-------dG~~~v~~~~~~-~~~~~~-----------~~~~~~-~~~~~~v~~~d~~~~~--  143 (173)
                        ..    .....+.+++       ++.+++=+.... ..+...           ...... +..+|.|..+|..++.  
T Consensus        99 --~~----~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~  172 (355)
T 3vu4_A           99 --VD----APVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSNEFNLGQIHITKLQSSGSA  172 (355)
T ss_dssp             --CS----SCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEESSCTTCEEEEECCC----
T ss_pred             --CC----CceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeCCCcCcEEEEEECCCCCcc
Confidence              11    1223344443       444444332211 000000           000111 4567889999987654  


Q ss_pred             ---------------eEEeeccccCcceEEEccCCCEEEEEe
Q 030700          144 ---------------TSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ---------------~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                                     ...+...-...+.++|+|||++|..+.
T Consensus       173 ~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s  214 (355)
T 3vu4_A          173 TTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCS  214 (355)
T ss_dssp             --------------CCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEe
Confidence                           333333345567899999999776653

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.57  E-value=0.015  Score=44.54  Aligned_cols=152  Identities=10%  Similarity=0.012  Sum_probs=80.0

Q ss_pred             CcceEEEcCCCCEEEE-cCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C---cEE
Q 030700           11 HPEDVSVDGNGVLYTA-TGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G---VTV   83 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~-~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g---~~~   83 (173)
                      ...+|+|.|+|.++++ ..++.|..|+. +++... +........ .+  +.+++++..+.....+...+.. .   ...
T Consensus       149 ~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~-~~--s~~~~~l~sgs~d~~i~~~d~~~~~~~~~~  225 (420)
T 4gga_A          149 YISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVG-SL--SWNSYILSSGSRSGHIHHHDVRVAEHHVAT  225 (420)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EE--EEETTEEEEEETTSEEEEEETTSSSCEEEE
T ss_pred             cEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceE-EE--eeCCCEEEEEeCCCceeEeeecccceeeEE
Confidence            3578999999976654 48899999985 454433 222233333 44  4455673444433344444432 2   222


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEE----------eCcCCcC----cc------c---------ceee-e--cccCCC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFT----------VSSTKFT----PA------E---------YYLD-L--VSGEPH  131 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~----------~~~~~~~----~~------~---------~~~~-~--~~~~~~  131 (173)
                      +... .    .....+.+.++|..+++          +......    ..      .         .... +  ..+..+
T Consensus       226 ~~~h-~----~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D  300 (420)
T 4gga_A          226 LSGH-S----QEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSD  300 (420)
T ss_dssp             EECC-S----SCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTT
T ss_pred             eccc-c----cceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCC
Confidence            2111 1    12334444444443332          2111000    00      0         0000 0  113456


Q ss_pred             ceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       132 ~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +.|..+|..+++.............++|+++++.++++-
T Consensus       301 ~~I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~s  339 (420)
T 4gga_A          301 RHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH  339 (420)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEE
T ss_pred             CEEEEEeCCccccceeeccccceeeeeecCCCCeEEEEE
Confidence            788889998887666665566677899999998887753

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=97.57  E-value=0.0081  Score=46.07  Aligned_cols=140  Identities=11%  Similarity=0.080  Sum_probs=83.3

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCc-----EEEeccccCccccceEEccCC-cEEEEEe-CCCeEEEE-cc
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGT-----WEDWHQVGSQSLLGLTTTKEN-NVIIVCD-SQQGLLKV-SE   78 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~-----~~~~~~~~~~p~~gl~~~~~g-~l~~v~~-~~~~i~~~-~~   78 (173)
                      .....++.+.++|..+++. .++.+..++. .++     ............ .+++++.+ ++++++. ..++.+++ +.
T Consensus       230 ~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~-~~~~~p~~~~~la~~~gs~D~~I~iwd~  308 (420)
T 4gga_A          230 SQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVK-AVAWCPWQSNVLATGGGTSDRHIRIWNV  308 (420)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEE-EEEECTTCTTEEEEEECTTTCEEEEEET
T ss_pred             ccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCcee-eeeeCCCcccEEEEEeecCCCEEEEEeC
Confidence            3456678888888766544 7788888874 232     122223344556 88898865 4533332 22344444 43


Q ss_pred             -CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcc
Q 030700           79 -EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFAN  155 (173)
Q Consensus        79 -~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~  155 (173)
                       ++ .......  .   ..+..+.+.+++..+++..               +..++.|..+|..+++......+ .....
T Consensus       309 ~t~~~~~~~~~--~---~~v~~~~~~~~~~~lv~~s---------------g~~d~~I~iwd~~~~~~v~~l~gH~~~V~  368 (420)
T 4gga_A          309 CSGACLSAVDA--H---SQVCSILWSPHYKELISGH---------------GFAQNQLVIWKYPTMAKVAELKGHTSRVL  368 (420)
T ss_dssp             TTTEEEEEEEC--S---SCEEEEEEETTTTEEEEEE---------------CTTTCCEEEEETTTCCEEEEECCCSSCEE
T ss_pred             Cccccceeecc--c---cceeeeeecCCCCeEEEEE---------------ecCCCEEEEEECCCCcEEEEEcCCCCCEE
Confidence             55 2222211  1   3457788899887555421               11347899999887765444443 45568


Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      .|+|+|||++|+.+
T Consensus       369 ~l~~spdg~~l~S~  382 (420)
T 4gga_A          369 SLTMSPDGATVASA  382 (420)
T ss_dssp             EEEECTTSSCEEEE
T ss_pred             EEEEcCCCCEEEEE
Confidence            89999999977654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=97.52  E-value=0.0041  Score=47.50  Aligned_cols=65  Identities=12%  Similarity=0.164  Sum_probs=41.1

Q ss_pred             CCcceEEEcC--------CCCEEEEc-CCCeEEEEcC-CCc-EEEeccccCccccceEEccCCc-EEEEEeCCCeEEEE
Q 030700           10 NHPEDVSVDG--------NGVLYTAT-GDGWIKRMHP-NGT-WEDWHQVGSQSLLGLTTTKENN-VIIVCDSQQGLLKV   76 (173)
Q Consensus        10 ~~p~~l~~~~--------~g~l~~~~-~~~~i~~~~~-~g~-~~~~~~~~~~p~~gl~~~~~g~-l~~v~~~~~~i~~~   76 (173)
                      ....+|+|.|        +|+++++. .++.|..||. ++. ............ .++|+|++. +|+.+. .++.+++
T Consensus       137 ~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~-~v~~~p~~~~~l~~~~-~d~~v~~  213 (393)
T 4gq1_A          137 NFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGI-SVQFRPSNPNQLIVGE-RNGNIRI  213 (393)
T ss_dssp             SCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEE-EEEEETTEEEEEEEEE-TTSEEEE
T ss_pred             CceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcE-EEEECCCCCceEEecC-CCCEEEE
Confidence            3456788876        67777766 7888888985 343 333434455567 999999874 534443 4444444

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=97.49  E-value=0.014  Score=44.32  Aligned_cols=135  Identities=13%  Similarity=-0.064  Sum_probs=71.2

Q ss_pred             eEEEcC---CCCEEEEc-CCCeEEEEcC-CCcEEEecc-cc---CccccceEEccCCcEEEEEeC-----------CCeE
Q 030700           14 DVSVDG---NGVLYTAT-GDGWIKRMHP-NGTWEDWHQ-VG---SQSLLGLTTTKENNVIIVCDS-----------QQGL   73 (173)
Q Consensus        14 ~l~~~~---~g~l~~~~-~~~~i~~~~~-~g~~~~~~~-~~---~~p~~gl~~~~~g~l~~v~~~-----------~~~i   73 (173)
                      .+++.+   ++.++++. .++.|..||. +|+...... ..   .... .++|+|+|+++.++..           ..+.
T Consensus       183 ~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~-~vafSpdG~~lvs~s~~~~~w~laSGs~D~t  261 (356)
T 2w18_A          183 ILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVC-HKAYSEMGLLFIVLSHPCAKESESLRSPVFQ  261 (356)
T ss_dssp             EEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCE-EEEEEETTEEEEEEC------------CCEE
T ss_pred             eEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeE-EEEECCCCCEEEEeccCCCcceeeccCCCcE
Confidence            456666   56778775 7888999995 576544322 11   1334 5689999988433221           1222


Q ss_pred             EEE-cc-CC--cEEEEec-cCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           74 LKV-SE-EG--VTVLVSQ-FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        74 ~~~-~~-~g--~~~~~~~-~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      +++ +. +|  ...+.-. .++..   -.-+..+.+|.+.++                 ...+++|..+|..+++.....
T Consensus       262 IklWd~~tgk~l~v~~~~~p~Gh~---~~~lsg~~sg~~lAS-----------------gS~DgTIkIWDl~tGk~l~tL  321 (356)
T 2w18_A          262 LIVINPKTTLSVGVMLYCLPPGQA---GRFLEGDVKDHCAAA-----------------ILTSGTIAIWDLLLGQCTALL  321 (356)
T ss_dssp             EEEEETTTTEEEEEEEECCCTTCC---CCEEEEEEETTEEEE-----------------EETTSCEEEEETTTCSEEEEE
T ss_pred             EEEEECCCCEEEEEEEeeccCCCc---ceeEccccCCCEEEE-----------------EcCCCcEEEEECCCCcEEEEe
Confidence            332 33 33  1111100 01110   011112222333333                 234578999999988866555


Q ss_pred             cc-ccCcc-eEEEccCCCEEEEE
Q 030700          149 DG-LYFAN-GVALSEDERFLVVC  169 (173)
Q Consensus       149 ~~-~~~p~-gi~~~~dg~~lyv~  169 (173)
                      .+ ...+. .++|+|||++|+-+
T Consensus       322 ~gH~~~vvs~vafSPDG~~LaSG  344 (356)
T 2w18_A          322 PPVSDQHWSFVKWSGTDSHLLAG  344 (356)
T ss_dssp             CCC--CCCCEEEECSSSSEEEEE
T ss_pred             cCCCCCeEEEEEECCCCCEEEEE
Confidence            43 33344 58999999988754

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=97.47  E-value=0.006  Score=50.27  Aligned_cols=141  Identities=11%  Similarity=0.012  Sum_probs=74.0

Q ss_pred             CCcceEEEcCCCC--EEEEcCC----CeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC------------
Q 030700           10 NHPEDVSVDGNGV--LYTATGD----GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ------------   70 (173)
Q Consensus        10 ~~p~~l~~~~~g~--l~~~~~~----~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~------------   70 (173)
                      ....+++++|+|+  +|..+..    ..|+.+|. +|+............ +++|+ ||+.||++...            
T Consensus       129 ~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~k~~-~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~  206 (693)
T 3iuj_A          129 TALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPLKDVKFS-GISWL-GNEGFFYSSYDKPDGSELSARTD  206 (693)
T ss_dssp             CEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEEEEEESC-CCEEE-TTTEEEEEESSCCC-------CC
T ss_pred             EEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCccccCCceec-cEEEe-CCCEEEEEEecCcccccccccCC
Confidence            3456789999986  3344433    35778885 455443211111135 78899 88765665433            


Q ss_pred             -CeEEEEcc-CC--c-EEEEeccCC-ccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC-
Q 030700           71 -QGLLKVSE-EG--V-TVLVSQFNG-SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN-  142 (173)
Q Consensus        71 -~~i~~~~~-~g--~-~~~~~~~~~-~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~-  142 (173)
                       ..|++++. .+  . ..+... .+ .+ ....++.++|||+ ++++...              ......|+.+|.+++ 
T Consensus       207 ~~~v~~~~lgt~~~~~~~v~~~-~~~~~-~~~~~~~~SpDg~~l~~~~~~--------------~~~~~~i~~~d~~~~~  270 (693)
T 3iuj_A          207 QHKVYFHRLGTAQEDDRLVFGA-IPAQH-HRYVGATVTEDDRFLLISAAN--------------STSGNRLYVKDLSQEN  270 (693)
T ss_dssp             CCEEEEEETTSCGGGCEEEESC-SGGGC-CSEEEEEECTTSCEEEEEEES--------------SSSCCEEEEEETTSTT
T ss_pred             CcEEEEEECCCCcccceEEEec-CCCCC-eEEEEEEEcCCCCEEEEEEcc--------------CCCCcEEEEEECCCCC
Confidence             23666553 22  2 223221 11 01 1235678999997 4454321              112247888887654 


Q ss_pred             -eeEEeeccccCcceEEEccCCCEEEEE
Q 030700          143 -QTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       143 -~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                       ....+......-... ++++|+.||+.
T Consensus       271 ~~~~~l~~~~~~~~~~-~~~~g~~l~~~  297 (693)
T 3iuj_A          271 APLLTVQGDLDADVSL-VDNKGSTLYLL  297 (693)
T ss_dssp             CCCEEEECSSSSCEEE-EEEETTEEEEE
T ss_pred             CceEEEeCCCCceEEE-EeccCCEEEEE
Confidence             455554433222222 56666666654

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=97.45  E-value=0.0065  Score=44.83  Aligned_cols=147  Identities=15%  Similarity=0.107  Sum_probs=70.6

Q ss_pred             CcceEEEcC--CCCEE-EEcCCCeEEEEcCC-CcE---EEeccccCccccceEEccC--CcEEEEEeCCCe-EEEEccC-
Q 030700           11 HPEDVSVDG--NGVLY-TATGDGWIKRMHPN-GTW---EDWHQVGSQSLLGLTTTKE--NNVIIVCDSQQG-LLKVSEE-   79 (173)
Q Consensus        11 ~p~~l~~~~--~g~l~-~~~~~~~i~~~~~~-g~~---~~~~~~~~~p~~gl~~~~~--g~l~~v~~~~~~-i~~~~~~-   79 (173)
                      ...+++|.+  ++.++ .+..++.|..|+.. +..   ..+........ .++|+++  +.+ +++...++ +...+.. 
T Consensus        59 ~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~-~v~~~p~~~g~~-lasgs~D~~i~lwd~~~  136 (316)
T 3bg1_A           59 PVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVN-SVCWAPHDYGLI-LACGSSDGAISLLTYTG  136 (316)
T ss_dssp             CEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCC-EEEECCTTTCSC-EEEECSSSCEEEEEECS
T ss_pred             cEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceE-EEEECCCCCCcE-EEEEcCCCCEEEEecCC
Confidence            456788875  46544 45588999999853 432   22323344567 9999987  777 44444444 4433432 


Q ss_pred             C-cEEEEeccCCccccCCccEEEcCCCc---EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC---eeEEeec-cc
Q 030700           80 G-VTVLVSQFNGSQLRFANDVIEASDGS---LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN---QTSLVLD-GL  151 (173)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~~~dG~---~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~---~~~~~~~-~~  151 (173)
                      + .........+. ....+.++++|++.   +......  . .......++....++.|..+|..++   +...... ..
T Consensus       137 ~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~  212 (316)
T 3bg1_A          137 EGQWEVKKINNAH-TIGCNAVSWAPAVVPGSLIDHPSG--Q-KPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHS  212 (316)
T ss_dssp             SSCEEECCBTTSS-SSCBCCCEECCCCCC------CCS--C-CCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCS
T ss_pred             CCCcceeeeeccc-cCCcceEEEccccCCccccccccc--c-CccccceEEEecCCCeEEEEEeCCCCccceeeecccCC
Confidence            2 22222222211 12346677777631   1100000  0 0000011222334566666665433   1211122 23


Q ss_pred             cCcceEEEccCC
Q 030700          152 YFANGVALSEDE  163 (173)
Q Consensus       152 ~~p~gi~~~~dg  163 (173)
                      ...+.++|+|++
T Consensus       213 ~~V~~v~~sp~~  224 (316)
T 3bg1_A          213 DWVRDVAWAPSI  224 (316)
T ss_dssp             SCEEEEECCCCS
T ss_pred             CceEEEEecCCC
Confidence            445789999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=97.40  E-value=0.0032  Score=51.93  Aligned_cols=139  Identities=12%  Similarity=0.029  Sum_probs=78.9

Q ss_pred             cceEEEcCCCC-EEEEcC-----CCeEEEEcCC-------C--cEEEeccccCccccceEEccCCcEEEEEeCC----Ce
Q 030700           12 PEDVSVDGNGV-LYTATG-----DGWIKRMHPN-------G--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QG   72 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~~~-----~~~i~~~~~~-------g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----~~   72 (173)
                      ..++.++|+|+ |+++..     +..|+.++.+       +  ....+........  -.++++|+.+|+....    ..
T Consensus       235 ~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~--~~~s~dg~~l~~~s~~~~~~~~  312 (710)
T 2xdw_A          235 MGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEY--DYVTNEGTVFTFKTNRHSPNYR  312 (710)
T ss_dssp             EEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCE--EEEEEETTEEEEEECTTCTTCE
T ss_pred             EEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeCCCCcEE--EEEeccCCEEEEEECCCCCCCE
Confidence            34789999885 554431     4678888854       3  3444433322222  3467777765665432    24


Q ss_pred             EEEEccC-C-c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe-eEE
Q 030700           73 LLKVSEE-G-V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ-TSL  146 (173)
Q Consensus        73 i~~~~~~-g-~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~-~~~  146 (173)
                      |+.++.+ + .   +.+....+.   ....++++.+++.++++...               ....+|+++++.+|+ .+.
T Consensus       313 l~~~d~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~~lv~~~~~---------------~g~~~l~~~~~~~g~~~~~  374 (710)
T 2xdw_A          313 LINIDFTDPEESKWKVLVPEHEK---DVLEWVACVRSNFLVLCYLH---------------DVKNTLQLHDLATGALLKI  374 (710)
T ss_dssp             EEEEETTSCCGGGCEEEECCCSS---CEEEEEEEETTTEEEEEEEE---------------TTEEEEEEEETTTCCEEEE
T ss_pred             EEEEeCCCCCcccceeccCCCCC---CeEEEEEEEcCCEEEEEEEE---------------CCEEEEEEEECCCCCEEEe
Confidence            7777753 3 2   444322111   23456777767777776422               122478999985554 344


Q ss_pred             eeccccCcceEEEccCCCEEEEEe
Q 030700          147 VLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       147 ~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +........+++++|+++.++++-
T Consensus       375 l~~~~~~v~~~~~s~d~~~l~~~~  398 (710)
T 2xdw_A          375 FPLEVGSVVGYSGQKKDTEIFYQF  398 (710)
T ss_dssp             ECCCSSEEEEEECCTTCSEEEEEE
T ss_pred             cCCCCceEEEEecCCCCCEEEEEE
Confidence            433333445788889988777653

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=97.35  E-value=0.003  Score=48.58  Aligned_cols=99  Identities=13%  Similarity=0.192  Sum_probs=67.7

Q ss_pred             CCcceEEEcCC----C-CEEEEc-CCCeEEEEc----CCC----cEEEecccc--CccccceEEc-cCCcEEEEEeCC-C
Q 030700           10 NHPEDVSVDGN----G-VLYTAT-GDGWIKRMH----PNG----TWEDWHQVG--SQSLLGLTTT-KENNVIIVCDSQ-Q   71 (173)
Q Consensus        10 ~~p~~l~~~~~----g-~l~~~~-~~~~i~~~~----~~g----~~~~~~~~~--~~p~~gl~~~-~~g~l~~v~~~~-~   71 (173)
                      .+..|++.+|+    + .||+.. ...+++++.    .+.    .++.+.+.+  .... ++++| .+|.+ |+++.. +
T Consensus       220 ~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T~~L~~~~~~~~v~~~G~kg~~s~~~-~~~~D~~~G~l-y~~~~~~~  297 (381)
T 3q6k_A          220 AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNTKELKQKGGKLNPELLGNRGKYNDAI-ALAYDPKTKVI-FFAEANTK  297 (381)
T ss_dssp             CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEHHHHSSTTCCCCCEEEEECCTTCCEE-EEEECTTTCEE-EEEESSSS
T ss_pred             cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEHHHhhCcchhhceEEeeecCCCCCcc-eEEEeCCCCeE-EEEeccCC
Confidence            47889999985    4 699988 555799885    122    223332332  2344 67786 78888 888866 5


Q ss_pred             eEEEEccCC-------cEEEEeccCCccccCCccEEEcCCCcEEEEeCc
Q 030700           72 GLLKVSEEG-------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSS  113 (173)
Q Consensus        72 ~i~~~~~~g-------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~  113 (173)
                      .|.++++++       .+.+...   ..+.+|++|.++++|.+|+..+.
T Consensus       298 aI~~w~~~~~~~~~~n~~~l~~d---~~l~~pd~~~i~~~g~Lwv~sn~  343 (381)
T 3q6k_A          298 QVSCWNTQKMPLRMKNTDVVYTS---SRFVFGTDISVDSKGGLWFMSNG  343 (381)
T ss_dssp             EEEEEETTSCSBCGGGEEEEEEC---TTCCSEEEEEECTTSCEEEEECS
T ss_pred             eEEEEeCCCCccccCceEEEEEC---CCccccCeEEECCCCeEEEEECc
Confidence            688887642       3444432   25679999999999999998754

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.31  E-value=0.025  Score=40.95  Aligned_cols=62  Identities=13%  Similarity=0.081  Sum_probs=40.5

Q ss_pred             ceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEecc---ccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700           13 EDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQ---VGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~---~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      ..|+|.+++ +.++..++.|+.||. +|+......   ...... .+++++++++ +++...++.+++.
T Consensus        29 ~~l~WS~~~-~lAvg~D~tV~iWd~~tg~~~~~~~~~~~~~~V~-~v~~~~~~~~-l~sgs~Dg~v~iw   94 (318)
T 4ggc_A           29 NLVDWSSGN-VLAVALDNSVYLWSASSGDILQLLQMEQPGEYIS-SVAWIKEGNY-LAVGTSSAEVQLW   94 (318)
T ss_dssp             BCEEECTTS-EEEEEETTEEEEEETTTCCEEEEEECCSTTCCEE-EEEECTTSSE-EEEEETTSEEEEE
T ss_pred             eEEEECCCC-EEEEEeCCEEEEEECCCCCEEEEEEecCCCCeEE-EEEECCCCCE-EEEEECCCcEEEe
Confidence            468998876 554446788999995 566554322   233456 8999999999 4444444544444

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.28  E-value=0.013  Score=44.71  Aligned_cols=99  Identities=15%  Similarity=0.190  Sum_probs=57.9

Q ss_pred             CcceEEEcC--CCCEEEEcCCC----eEEEEcCCC-cEEEecccc--------------CccccceEEcc---CCcEEEE
Q 030700           11 HPEDVSVDG--NGVLYTATGDG----WIKRMHPNG-TWEDWHQVG--------------SQSLLGLTTTK---ENNVIIV   66 (173)
Q Consensus        11 ~p~~l~~~~--~g~l~~~~~~~----~i~~~~~~g-~~~~~~~~~--------------~~p~~gl~~~~---~g~l~~v   66 (173)
                      ...+|++||  .+.||++...+    .|++.+-.| .+..+....              .... +|++++   .+++ |+
T Consensus        56 ~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~-~l~~~~~~~~~~l-~~  133 (394)
T 3b7f_A           56 TIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVF-WLTPGHASEPGTW-YA  133 (394)
T ss_dssp             EEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEE-EEEECCTTSTTCE-EE
T ss_pred             ceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCccccccccccccee-EEEeCCCCCCCEE-EE
Confidence            467899999  78999877555    788875444 355543211              1233 577875   4566 87


Q ss_pred             EeCCCeEEEEccCC--cEEEEecc--C------------CccccCCccEEEcC--CCcEEEEe
Q 030700           67 CDSQQGLLKVSEEG--VTVLVSQF--N------------GSQLRFANDVIEAS--DGSLYFTV  111 (173)
Q Consensus        67 ~~~~~~i~~~~~~g--~~~~~~~~--~------------~~~~~~~~~l~~~~--dG~~~v~~  111 (173)
                      .....++++-++.|  .+.+....  .            +........|.++|  .+.+|++.
T Consensus       134 g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~  196 (394)
T 3b7f_A          134 GTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGM  196 (394)
T ss_dssp             EEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEE
T ss_pred             EecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEE
Confidence            66566788776666  33332110  0            00112345788887  35789874

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=97.18  E-value=0.006  Score=50.20  Aligned_cols=136  Identities=10%  Similarity=-0.025  Sum_probs=75.7

Q ss_pred             ceEEEcCCCC-EEEEcCC----CeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeC-C---CeEEEEccC-C-
Q 030700           13 EDVSVDGNGV-LYTATGD----GWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDS-Q---QGLLKVSEE-G-   80 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~~~----~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~-~---~~i~~~~~~-g-   80 (173)
                      .++.++|+|+ |+++...    ..|+.++. ++.+..+........ ...+ ++|++ |+... .   ..|+.++.+ + 
T Consensus       230 ~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~-~~~~-~~g~l-~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          230 LQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKY-EVHA-WKDRF-YVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             EEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCE-EEEE-ETTEE-EEEECTTCTTCEEEEEBTTBCS
T ss_pred             EEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceE-EEEe-cCCcE-EEEECCCCCCCEEEEEeCCCCC
Confidence            4788999884 5554422    26888874 455555544443334 4444 56665 66543 2   357877753 3 


Q ss_pred             c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcce
Q 030700           81 V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANG  156 (173)
Q Consensus        81 ~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~g  156 (173)
                      .   +.+....+.   ....+++++ ++.++++...               ....+|+.++.+++..+.+... .....+
T Consensus       307 ~~~~~~l~~~~~~---~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~~v~~  367 (695)
T 2bkl_A          307 RASWKEIVPEDSS---ASLLSVSIV-GGHLSLEYLK---------------DATSEVRVATLKGKPVRTVQLPGVGAASN  367 (695)
T ss_dssp             GGGCEEEECCCSS---CEEEEEEEE-TTEEEEEEEE---------------TTEEEEEEEETTCCEEEECCCSSSSEECC
T ss_pred             ccCCeEEecCCCC---CeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCeeEEecCCCCeEEEE
Confidence            3   444322111   233556776 6677776322               1224788888764444443322 333456


Q ss_pred             EEEccCCCEEEEEe
Q 030700          157 VALSEDERFLVVCE  170 (173)
Q Consensus       157 i~~~~dg~~lyv~~  170 (173)
                      ++++||++.++++-
T Consensus       368 ~~~s~d~~~l~~~~  381 (695)
T 2bkl_A          368 LMGLEDLDDAYYVF  381 (695)
T ss_dssp             CBSCTTCSEEEEEE
T ss_pred             eecCCCCCEEEEEE
Confidence            77888888777653

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.0076  Score=48.24  Aligned_cols=136  Identities=9%  Similarity=-0.022  Sum_probs=75.3

Q ss_pred             CcceEEEcCC------CCEEEEc-CCCeEEEEcCC-CcE------------EEeccccCccccceEEccCCcEEEEEeCC
Q 030700           11 HPEDVSVDGN------GVLYTAT-GDGWIKRMHPN-GTW------------EDWHQVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        11 ~p~~l~~~~~------g~l~~~~-~~~~i~~~~~~-g~~------------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ....++|.|+      +.++++. .++.|..|+.. +..            ..+........ +++|++++ .|+.+...
T Consensus       209 ~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~-sv~~s~~~-~lasgs~D  286 (524)
T 2j04_B          209 EVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLIT-TFDFLSPT-TVVCGFKN  286 (524)
T ss_dssp             SEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEE-EEEESSSS-EEEEEETT
T ss_pred             cEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEE-EEEecCCC-eEEEEeCC
Confidence            3567899985      4566544 78888888853 221            01112223456 88998775 42555433


Q ss_pred             CeEEEEcc-CC-c-EEEEeccCCccccCCccE--EEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           71 QGLLKVSE-EG-V-TVLVSQFNGSQLRFANDV--IEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        71 ~~i~~~~~-~g-~-~~~~~~~~~~~~~~~~~l--~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      ..|...+. ++ . ........    .....+  ++.++| .++++..                 .++.|..+|..+++.
T Consensus       287 gtV~lWD~~~~~~~~~~~~~H~----~~V~sv~~~~s~~g~~~laS~S-----------------~D~tvklWD~~~~~~  345 (524)
T 2j04_B          287 GFVAEFDLTDPEVPSFYDQVHD----SYILSVSTAYSDFEDTVVSTVA-----------------VDGYFYIFNPKDIAT  345 (524)
T ss_dssp             SEEEEEETTBCSSCSEEEECSS----SCEEEEEEECCTTSCCEEEEEE-----------------TTSEEEEECGGGHHH
T ss_pred             CEEEEEECCCCCCceEEeeccc----ccEEEEEEEcCCCCCeEEEEec-----------------cCCeEEEEECCCCCc
Confidence            34444443 34 2 11111111    235666  456787 7777632                 457888899865442


Q ss_pred             EEee-ccc--cCcceEEEccCCCEEEEE
Q 030700          145 SLVL-DGL--YFANGVALSEDERFLVVC  169 (173)
Q Consensus       145 ~~~~-~~~--~~p~gi~~~~dg~~lyv~  169 (173)
                      .... ...  .....++|+|+++.+..+
T Consensus       346 ~~~~~~~~~~~~v~~v~fsp~~~~l~s~  373 (524)
T 2j04_B          346 TKTTVSRFRGSNLVPVVYCPQIYSYIYS  373 (524)
T ss_dssp             HCEEEEECSCCSCCCEEEETTTTEEEEE
T ss_pred             ccccccccccCcccceEeCCCcCeEEEe
Confidence            1111 111  234679999999876554

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.15  E-value=0.048  Score=41.89  Aligned_cols=133  Identities=13%  Similarity=0.089  Sum_probs=68.8

Q ss_pred             cceEEEcCCC-CEEEEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cEEEE
Q 030700           12 PEDVSVDGNG-VLYTATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VTVLV   85 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~~~~   85 (173)
                      ..++++  ++ .++++..++.|..||. +++... +........ .+.+  ++++++.+.....+..++. ++  ...+.
T Consensus       282 v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~  356 (445)
T 2ovr_B          282 VYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQ  356 (445)
T ss_dssp             EEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             eEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEE-EEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEc
Confidence            445555  44 4445557778888874 444332 222223334 4544  4456344443444555553 44  23322


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee------ccccCcceEEE
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL------DGLYFANGVAL  159 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~------~~~~~p~gi~~  159 (173)
                      .. . ........++++  +.++++-                 ..++.|..+|..+++.....      ........++|
T Consensus       357 ~~-~-~~~~~v~~~~~~--~~~l~s~-----------------~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~  415 (445)
T 2ovr_B          357 GP-N-KHQSAVTCLQFN--KNFVITS-----------------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA  415 (445)
T ss_dssp             ST-T-SCSSCEEEEEEC--SSEEEEE-----------------ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE
T ss_pred             cC-C-CCCCCEEEEEEC--CCEEEEE-----------------eCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEe
Confidence            11 0 011234455654  4554442                 24578999998877654333      12344578999


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +|++..+.++.
T Consensus       416 s~~~~~la~~~  426 (445)
T 2ovr_B          416 SNTKLVCAVGS  426 (445)
T ss_dssp             CSSEEEEEEEC
T ss_pred             cCCEEEEEEcc
Confidence            99987766653

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=97.14  E-value=0.02  Score=47.27  Aligned_cols=109  Identities=15%  Similarity=0.258  Sum_probs=60.6

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccc-c------------CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEE
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQV-G------------SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTV   83 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~-~------------~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~   83 (173)
                      +|.||++..++.|+.+|. +|+.. |.-. .            .... ++++ .++++ |++.....++.+|. +| ...
T Consensus        77 ~g~vyv~~~~~~v~AlD~~tG~~~-W~~~~~~~~~~~~~~~~~~~~~-~~a~-~~~~v-~v~~~dg~l~alD~~tG~~~W  152 (677)
T 1kb0_A           77 DGIMYVSASWSVVHAIDTRTGNRI-WTYDPQIDRSTGFKGCCDVVNR-GVAL-WKGKV-YVGAWDGRLIALDAATGKEVW  152 (677)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEEE-EEECCCCCGGGGGGSSSCSCCC-CCEE-ETTEE-EEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEE-EEEcCCCCccccccccccCCCC-CceE-ECCEE-EEEcCCCEEEEEECCCCCEEe
Confidence            788999987789999995 56532 2111 0            1123 5666 34566 88866667999995 78 332


Q ss_pred             EEecc-CCcc-ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           84 LVSQF-NGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        84 ~~~~~-~~~~-~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      -.... +... ........+. +|.+|++.....+            ..++.|+.+|+++|+..
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~-~~~v~v~~~~~~~------------~~~g~v~a~D~~tG~~~  203 (677)
T 1kb0_A          153 HQNTFEGQKGSLTITGAPRVF-KGKVIIGNGGAEY------------GVRGYITAYDAETGERK  203 (677)
T ss_dssp             EEETTTTCCSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCEE
T ss_pred             eecCCcCcCcCcccccCcEEE-CCEEEEEeccccc------------CCCCEEEEEECCCCcEE
Confidence            22221 1000 0111122232 5678887432111            12478889998888653

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=97.11  E-value=0.028  Score=46.56  Aligned_cols=141  Identities=11%  Similarity=0.010  Sum_probs=74.6

Q ss_pred             cceEEEcCCCCEE-E-EcCCC----eEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCC-------------
Q 030700           12 PEDVSVDGNGVLY-T-ATGDG----WIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-------------   71 (173)
Q Consensus        12 p~~l~~~~~g~l~-~-~~~~~----~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-------------   71 (173)
                      ..+++|+|+|+.. + .+..|    .|+.+|.+ |+............ ++++++| +.++++....             
T Consensus       165 ~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~~~~~~-~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~  242 (741)
T 1yr2_A          165 LDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELKWVKFS-GLAWLGN-DALLYSRFAEPKEGQAFQALNYN  242 (741)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEEEEESC-CCEESTT-SEEEEEECCCC--------CCCC
T ss_pred             EEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCCCceec-cEEEECC-CEEEEEEecCcccccccccCCCC
Confidence            4568999998633 3 33222    58888864 45443211111235 7889999 7656654321             


Q ss_pred             -eEEEEcc-CC-c-EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC--e-
Q 030700           72 -GLLKVSE-EG-V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN--Q-  143 (173)
Q Consensus        72 -~i~~~~~-~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~--~-  143 (173)
                       .+++++. .+ . ..+.-...+.+ ....++.++|||+ ++++....             ......|+.+|.+++  + 
T Consensus       243 ~~v~~~~lgt~~~~~~lv~~~~~~~-~~~~~~~~SpDG~~l~~~~~~~-------------~~~~~~l~~~d~~~~~~~~  308 (741)
T 1yr2_A          243 QTVWLHRLGTPQSADQPVFATPELP-KRGHGASVSSDGRWVVITSSEG-------------TDPVNTVHVARVTNGKIGP  308 (741)
T ss_dssp             CEEEEEETTSCGGGCEEEECCTTCT-TCEEEEEECTTSCEEEEEEECT-------------TCSCCEEEEEEEETTEECC
T ss_pred             CEEEEEECCCCchhCEEEeccCCCC-eEEEEEEECCCCCEEEEEEEcc-------------CCCcceEEEEECCCCCCcc
Confidence             2666664 33 2 22221111111 1245788999997 44442110             002347888888766  4 


Q ss_pred             eEEeeccccCcceEEEccCCCEEEEE
Q 030700          144 TSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       144 ~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .+.+.......... ++|+|+.||+.
T Consensus       309 ~~~l~~~~~~~~~~-~~~dg~~l~~~  333 (741)
T 1yr2_A          309 VTALIPDLKAQWDF-VDGVGDQLWFV  333 (741)
T ss_dssp             CEEEECSSSSCEEE-EEEETTEEEEE
T ss_pred             cEEecCCCCceEEE-EeccCCEEEEE
Confidence            55555443332333 35788777765

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=97.08  E-value=0.063  Score=41.69  Aligned_cols=100  Identities=8%  Similarity=-0.070  Sum_probs=60.3

Q ss_pred             CCcceEEEcCC-CCEEEEc-CCCeEEEEcCC-CcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEE
Q 030700           10 NHPEDVSVDGN-GVLYTAT-GDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~-g~l~~~~-~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~   83 (173)
                      ....+++|+|+ +.++++. .++.|..||.. +... .......... +++|+++|++|+++.....+..++..+  ...
T Consensus       150 ~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v~-~v~wspdg~~lasgs~dg~v~iwd~~~~~~~~  228 (434)
T 2oit_A          150 GMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAVT-SVCWSPKGKQLAVGKQNGTVVQYLPTLQEKKV  228 (434)
T ss_dssp             GSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCEE-EEEECTTSSCEEEEETTSCEEEECTTCCEEEE
T ss_pred             CceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCcee-EEEEcCCCCEEEEEcCCCcEEEEccCCccccc
Confidence            45778999996 7777644 88999999854 3322 2222344577 999999999856665555566666555  222


Q ss_pred             EEeccCCc--cccCCccEEEcCCCcEEEE
Q 030700           84 LVSQFNGS--QLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        84 ~~~~~~~~--~~~~~~~l~~~~dG~~~v~  110 (173)
                      +.......  .......+.+++++.++++
T Consensus       229 ~~~~~~~~~~~~~~v~~v~w~~~~~~l~~  257 (434)
T 2oit_A          229 IPCPPFYESDHPVRVLDVLWIGTYVFAIV  257 (434)
T ss_dssp             ECCCTTCCTTSCEEEEEEEEEETTEEEEE
T ss_pred             ccCCcccCCCCceeEEEEEEecCceEEEE
Confidence            22111100  0114567788887765543

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=97.07  E-value=0.029  Score=42.85  Aligned_cols=97  Identities=14%  Similarity=0.164  Sum_probs=57.6

Q ss_pred             ceEEEcC---CCCEEEEcCCCeEEEEcCCC-cEEEeccc---c----------------CccccceEEcc--CCcEEEEE
Q 030700           13 EDVSVDG---NGVLYTATGDGWIKRMHPNG-TWEDWHQV---G----------------SQSLLGLTTTK--ENNVIIVC   67 (173)
Q Consensus        13 ~~l~~~~---~g~l~~~~~~~~i~~~~~~g-~~~~~~~~---~----------------~~p~~gl~~~~--~g~l~~v~   67 (173)
                      .+|+++|   .+.||+....+.|++.+-.| .+..+...   .                .... .|++++  .+++ |++
T Consensus       118 ~~l~~~~~~~~~~l~~g~~~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~-~i~~d~~~~~~l-~vg  195 (394)
T 3b7f_A          118 FWLTPGHASEPGTWYAGTSPQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMH-SILVDPRDPKHL-YIG  195 (394)
T ss_dssp             EEEEECCTTSTTCEEEEEETTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCEEE-EEEECTTCTTCE-EEE
T ss_pred             eEEEeCCCCCCCEEEEEecCCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCcee-EEEECCCCCCEE-EEE
Confidence            3588886   57899877667899986444 45554221   0                1235 788886  3466 887


Q ss_pred             eCCCeEEEEccCC--cEEEEeccCCc--c------ccCCccEEEcCC--CcEEEEe
Q 030700           68 DSQQGLLKVSEEG--VTVLVSQFNGS--Q------LRFANDVIEASD--GSLYFTV  111 (173)
Q Consensus        68 ~~~~~i~~~~~~g--~~~~~~~~~~~--~------~~~~~~l~~~~d--G~~~v~~  111 (173)
                      ....++++-.+.|  .+.+.......  +      ......|+++++  +.+|++.
T Consensus       196 ~~~ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~  251 (394)
T 3b7f_A          196 MSSGGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQN  251 (394)
T ss_dssp             EETBEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEE
T ss_pred             ECCCCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEc
Confidence            6555677766656  34332211110  0      023567889986  6788874

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=97.05  E-value=0.048  Score=39.37  Aligned_cols=107  Identities=7%  Similarity=-0.045  Sum_probs=59.1

Q ss_pred             cceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC---cEEEE
Q 030700           12 PEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG---VTVLV   85 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g---~~~~~   85 (173)
                      ..++++.|+|.++++. .++.|..|+. +++......... .. -..++.+++++..+.....+...+. .+   ...+.
T Consensus        70 V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~-~~-~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~  147 (318)
T 4ggc_A           70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHS-AR-VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLS  147 (318)
T ss_dssp             EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS-SC-EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCcc-ce-EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEc
Confidence            5689999998766554 8889999985 454433222211 12 3344556667444443333333333 33   22221


Q ss_pred             eccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      . ..    .....+.+.++|+++++..                 .++.|..+|..++
T Consensus       148 ~-~~----~~~~~~~~~~~~~~l~s~~-----------------~d~~i~iwd~~~~  182 (318)
T 4ggc_A          148 G-HS----QEVCGLRWAPDGRHLASGG-----------------NDNLVNVWPSAPG  182 (318)
T ss_dssp             C-CS----SCEEEEEECTTSSEEEEEE-----------------TTSCEEEEESSCB
T ss_pred             C-cc----CceEEEEEcCCCCEEEEEe-----------------cCcceeEEECCCC
Confidence            1 11    3456678888888666532                 3356777776654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=96.92  E-value=0.034  Score=41.84  Aligned_cols=59  Identities=17%  Similarity=0.261  Sum_probs=37.3

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccc----------cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQV----------GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~----------~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ++.+|++..++.|+++|. +|+..-....          .......++. .++++ |++.....++.++. +|
T Consensus        53 ~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v-~v~~~~g~l~a~d~~tG  123 (376)
T 3q7m_A           53 DNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV-SGGHV-YIGSEKAQVYALNTSDG  123 (376)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE-ETTEE-EEEETTSEEEEEETTTC
T ss_pred             CCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE-eCCEE-EEEcCCCEEEEEECCCC
Confidence            678999988889999996 5764311111          1111103333 45566 88876677999995 67

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.86  E-value=0.085  Score=39.27  Aligned_cols=94  Identities=20%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCCC-cEEEeccc-cCccccceEEccCCcEEEEEeCCCeEEEEccC-C--cEEEEe
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPNG-TWEDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G--VTVLVS   86 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~~~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g--~~~~~~   86 (173)
                      +..+++.+++.+|+....+.|++-.-.| .+...... ..... ++++++++++ |++.....+++-... |  .+.+..
T Consensus       124 ~~~i~~~~~~~~~~~~~~g~v~~S~DgG~tW~~~~~~~~~~~~-~~~~~~~~~~-~~~g~~G~~~~S~d~gG~tW~~~~~  201 (327)
T 2xbg_A          124 PRLIKALGNGSAEMITNVGAIYRTKDSGKNWQALVQEAIGVMR-NLNRSPSGEY-VAVSSRGSFYSTWEPGQTAWEPHNR  201 (327)
T ss_dssp             EEEEEEEETTEEEEEETTCCEEEESSTTSSEEEEECSCCCCEE-EEEECTTSCE-EEEETTSSEEEEECTTCSSCEEEEC
T ss_pred             eEEEEEECCCCEEEEeCCccEEEEcCCCCCCEEeecCCCcceE-EEEEcCCCcE-EEEECCCcEEEEeCCCCCceeECCC
Confidence            4567776778888777667788764234 46655332 23456 8888899888 655545456665554 4  344322


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEe
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      . .   ......++++++|++|+..
T Consensus       202 ~-~---~~~~~~~~~~~~g~~~~~~  222 (327)
T 2xbg_A          202 T-T---SRRLHNMGFTPDGRLWMIV  222 (327)
T ss_dssp             C-S---SSCEEEEEECTTSCEEEEE
T ss_pred             C-C---CCccceeEECCCCCEEEEe
Confidence            1 1   1355778888999988864

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=96.73  E-value=0.1  Score=43.06  Aligned_cols=15  Identities=0%  Similarity=0.106  Sum_probs=12.9

Q ss_pred             eEEEccCCCEEEEEe
Q 030700          156 GVALSEDERFLVVCE  170 (173)
Q Consensus       156 gi~~~~dg~~lyv~~  170 (173)
                      +++++|+++.+|+..
T Consensus       397 ~~a~dp~~~~~yv~~  411 (677)
T 1kb0_A          397 PMSFNPQTGLVYLPA  411 (677)
T ss_dssp             CCEEETTTTEEEEEE
T ss_pred             CceEcCCCCEEEEeC
Confidence            689999999999863

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=96.65  E-value=0.049  Score=45.10  Aligned_cols=136  Identities=13%  Similarity=0.138  Sum_probs=74.0

Q ss_pred             cceEEEcCCCC-EEEEcC-----CCeEEEEcCC-C--c-EEEeccccCccccceEEccCCcEEEEEeCC----CeEEEEc
Q 030700           12 PEDVSVDGNGV-LYTATG-----DGWIKRMHPN-G--T-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----QGLLKVS   77 (173)
Q Consensus        12 p~~l~~~~~g~-l~~~~~-----~~~i~~~~~~-g--~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----~~i~~~~   77 (173)
                      -.++.++|+|+ |+++..     ...|+.++.+ +  . +..+........ ... +++|+.||+....    ..|+.++
T Consensus       270 ~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~-~~~-~~dg~~l~~~s~~~~~~~~l~~~d  347 (741)
T 1yr2_A          270 GHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQW-DFV-DGVGDQLWFVSGDGAPLKKIVRVD  347 (741)
T ss_dssp             EEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCE-EEE-EEETTEEEEEECTTCTTCEEEEEE
T ss_pred             EEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceE-EEE-eccCCEEEEEECCCCCCCEEEEEe
Confidence            35788999985 554442     3478888853 3  3 444433333333 333 4666655665432    2477777


Q ss_pred             cCC----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-ccc
Q 030700           78 EEG----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLY  152 (173)
Q Consensus        78 ~~g----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~  152 (173)
                      .++    .+.+.....    ....++.++ ++.++++...               ....+|+.++.+++..+.+.. ...
T Consensus       348 ~~~~~~~~~~l~~~~~----~~l~~~~~~-~~~lv~~~~~---------------dg~~~l~~~~~~g~~~~~l~~~~~~  407 (741)
T 1yr2_A          348 LSGSTPRFDTVVPESK----DNLESVGIA-GNRLFASYIH---------------DAKSQVLAFDLDGKPAGAVSLPGIG  407 (741)
T ss_dssp             CSSSSCEEEEEECCCS----SEEEEEEEE-BTEEEEEEEE---------------TTEEEEEEEETTSCEEEECBCSSSC
T ss_pred             CCCCccccEEEecCCC----CeEEEEEEE-CCEEEEEEEE---------------CCEEEEEEEeCCCCceeeccCCCCe
Confidence            532    233332111    123455665 5567666322               122478888876554444432 233


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      ...+++++||++.|+++
T Consensus       408 ~v~~~~~s~d~~~l~~~  424 (741)
T 1yr2_A          408 SASGLSGRPGDRHAYLS  424 (741)
T ss_dssp             EEEEEECCBTCSCEEEE
T ss_pred             EEEEeecCCCCCEEEEE
Confidence            45678889998867654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.64  E-value=0.07  Score=43.12  Aligned_cols=108  Identities=12%  Similarity=0.174  Sum_probs=60.3

Q ss_pred             CCCEEEEcC-CCeEEEEcC--CCcEE--Eecccc----------CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cE
Q 030700           20 NGVLYTATG-DGWIKRMHP--NGTWE--DWHQVG----------SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus        20 ~g~l~~~~~-~~~i~~~~~--~g~~~--~~~~~~----------~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      ++.+|++.. ++.|+.+|.  +|+..  .-....          .... +++++ ++++ |+......++.+|. +| ..
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v-~v~~~dg~l~alD~~tG~~~  138 (571)
T 2ad6_A           62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-AGQI-VKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEE-EEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCcccccccccccccc-ccEEE-CCEE-EEEeCCCEEEEEECCCCCEE
Confidence            788999987 789999997  66532  111110          0123 45653 5566 88766667999995 78 33


Q ss_pred             EEEeccCCcc--ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           83 VLVSQFNGSQ--LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        83 ~~~~~~~~~~--~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      .-... .+.+  ........+. +|.+|++.....+            ..++.|+.+|+++|+.
T Consensus       139 W~~~~-~~~~~~~~~~~~P~v~-~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~  188 (571)
T 2ad6_A          139 WEVEV-CDPKVGSTLTQAPFVA-KDTVLMGCSGAEL------------GVRGAVNAFDLKTGEL  188 (571)
T ss_dssp             EEEEC-CCGGGTCBCCSCCEEE-TTEEEEECBCGGG------------TCCCEEEEEETTTCCE
T ss_pred             EEecC-CCCCccceeccCCEEE-CCEEEEEecCCcc------------CCCCEEEEEECCCCcE
Confidence            22221 1110  0011112222 5788887532100            1246889999888765

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=96.62  E-value=0.018  Score=48.05  Aligned_cols=112  Identities=10%  Similarity=0.016  Sum_probs=60.1

Q ss_pred             cceEEEc-CCCC-EE-EEcCCC----eEEEEcCCCc-EEEeccccCccccceEEccCCcEEEEEeCC-----CeEEEEcc
Q 030700           12 PEDVSVD-GNGV-LY-TATGDG----WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVSE   78 (173)
Q Consensus        12 p~~l~~~-~~g~-l~-~~~~~~----~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----~~i~~~~~   78 (173)
                      ..+++++ |+|+ |. ..+..|    .|+.++.++. ............ ++++++||+.|+++...     ..|++++.
T Consensus       176 ~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~~~~~-~~~WspDg~~l~y~~~d~~~~~~~v~~~~l  254 (751)
T 2xe4_A          176 VMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVSGTNG-EIVWGPDHTSLFYVTKDETLRENKVWRHVM  254 (751)
T ss_dssp             EEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEEEECS-CCEECSSTTEEEEEEECTTCCEEEEEEEET
T ss_pred             EeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCccccCcee-eEEEecCCCEEEEEEECCCCCCCEEEEEEC
Confidence            4568899 9986 33 344333    4888886543 211001111245 78999998654544322     24777764


Q ss_pred             C-C--c-EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           79 E-G--V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        79 ~-g--~-~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      . +  . ..+... ...  ....++.++|||+ |+++...               .....|+.+|.+++
T Consensus       255 gt~~~~~~lv~~~-~~~--~~~~~~~~SpDg~~l~~~~~~---------------~~~~~l~~~d~~~~  305 (751)
T 2xe4_A          255 GKLQSEDVCLYEE-HNP--LFSAFMYKAADTNTLCIGSQS---------------PETAEVHLLDLRKG  305 (751)
T ss_dssp             TSCGGGCEEEEEC-CCT--TCEEEEEECTTSSEEEEEEEC---------------SSCEEEEEEESSSC
T ss_pred             CCCchhcEEEEec-CCC--ceEEEEEECCCCCEEEEEecC---------------CCCceEEEEECCCC
Confidence            3 3  2 222221 111  1234678999997 5554321               12357888888764

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.60  E-value=0.14  Score=38.15  Aligned_cols=91  Identities=10%  Similarity=0.136  Sum_probs=54.1

Q ss_pred             cceEEEcCCCCEEEEcCCCeEEEEcCC-C-cEEEeccc---cCccccceEEccCCcEEEEEeCCCeEEEEccCC--cEEE
Q 030700           12 PEDVSVDGNGVLYTATGDGWIKRMHPN-G-TWEDWHQV---GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--VTVL   84 (173)
Q Consensus        12 p~~l~~~~~g~l~~~~~~~~i~~~~~~-g-~~~~~~~~---~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--~~~~   84 (173)
                      ..++++++ +.+|+....+.|++- .| | .+......   .+.+. .|++..++++ |++.....+++-.+.|  .+.+
T Consensus        82 ~~~i~~~~-~~~~~~g~~g~i~~S-~DgG~tW~~~~~~~~~~~~~~-~i~~~~~~~~-~~~~~~g~v~~S~DgG~tW~~~  157 (327)
T 2xbg_A           82 FNSVSFQG-NEGWIVGEPPIMLHT-TDGGQSWSQIPLDPKLPGSPR-LIKALGNGSA-EMITNVGAIYRTKDSGKNWQAL  157 (327)
T ss_dssp             EEEEEEET-TEEEEEEETTEEEEE-SSTTSSCEECCCCTTCSSCEE-EEEEEETTEE-EEEETTCCEEEESSTTSSEEEE
T ss_pred             EEEEEecC-CeEEEEECCCeEEEE-CCCCCCceECccccCCCCCeE-EEEEECCCCE-EEEeCCccEEEEcCCCCCCEEe
Confidence            35677875 678876656778775 34 3 35554321   23466 7887777777 6665444566554545  3333


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEE
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      .....    .....++++++|.+|+.
T Consensus       158 ~~~~~----~~~~~~~~~~~~~~~~~  179 (327)
T 2xbg_A          158 VQEAI----GVMRNLNRSPSGEYVAV  179 (327)
T ss_dssp             ECSCC----CCEEEEEECTTSCEEEE
T ss_pred             ecCCC----cceEEEEEcCCCcEEEE
Confidence            32211    24567888888887765

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=96.50  E-value=0.087  Score=43.36  Aligned_cols=134  Identities=10%  Similarity=0.128  Sum_probs=72.1

Q ss_pred             ceEEEcCCC-CEEEEcCC-------------CeEEEEcCC-Cc--EEEecccc----CccccceEEccCCcEEEEEeC-C
Q 030700           13 EDVSVDGNG-VLYTATGD-------------GWIKRMHPN-GT--WEDWHQVG----SQSLLGLTTTKENNVIIVCDS-Q   70 (173)
Q Consensus        13 ~~l~~~~~g-~l~~~~~~-------------~~i~~~~~~-g~--~~~~~~~~----~~p~~gl~~~~~g~l~~v~~~-~   70 (173)
                      .+++|. || .||++..+             ..|++++.. +.  ...+....    ..-. ++.+++||+.++++.. .
T Consensus       178 ~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~-~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          178 SGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYV-GATVTEDDRFLLISAANS  255 (693)
T ss_dssp             CCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEE-EEEECTTSCEEEEEEESS
T ss_pred             ccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEE-EEEEcCCCCEEEEEEccC
Confidence            457888 77 46655422             348887642 21  12222222    2235 7889999998665542 1


Q ss_pred             ---CeEEEEcc-C--C-cEEEEeccCCccccCCccEEEcCCC-cEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           71 ---QGLLKVSE-E--G-VTVLVSQFNGSQLRFANDVIEASDG-SLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        71 ---~~i~~~~~-~--g-~~~~~~~~~~~~~~~~~~l~~~~dG-~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                         +.++.++. +  + ...+......      ..-.++++| .+|+....              ..+..+|+.++.+++
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~------~~~~~~~~g~~l~~~t~~--------------~~~~~~l~~~d~~~~  315 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDA------DVSLVDNKGSTLYLLTNR--------------DAPNRRLVTVDAANP  315 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSS------CEEEEEEETTEEEEEECT--------------TCTTCEEEEEETTSC
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCc------eEEEEeccCCEEEEEECC--------------CCCCCEEEEEeCCCC
Confidence               35777773 2  2 4444332211      111255655 57776432              113468999998865


Q ss_pred             ee---EEeeccccCcceEEEccCCCEEEEEe
Q 030700          143 QT---SLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       143 ~~---~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..   +.+.......  +.|+++++.|+++.
T Consensus       316 ~~~~~~~l~~~~~~~--~~~s~~g~~lv~~~  344 (693)
T 3iuj_A          316 GPAHWRDLIPERQQV--LTVHSGSGYLFAEY  344 (693)
T ss_dssp             CGGGCEEEECCCSSC--EEEEEETTEEEEEE
T ss_pred             CccccEEEecCCCCE--EEEEEECCEEEEEE
Confidence            43   4444332222  27888888887654

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=96.39  E-value=0.15  Score=42.17  Aligned_cols=109  Identities=17%  Similarity=0.197  Sum_probs=59.4

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE--Eecccc----------CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE--DWHQVG----------SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~--~~~~~~----------~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      ++.||++..++.|+.+|. +|+..  .-....          .... ++++ .++++ |+......++.+|. +| ...-
T Consensus        70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~-~~g~v-~v~~~dg~l~AlDa~TG~~~W~  146 (689)
T 1yiq_A           70 DGVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNR-GVAV-WKGKV-YVGVLDGRLEAIDAKTGQRAWS  146 (689)
T ss_dssp             TTEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEE-ETTEE-EEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCC-ccEE-ECCEE-EEEccCCEEEEEECCCCCEeee
Confidence            778999887788999995 66532  111100          0123 4555 35566 88766667888995 78 3322


Q ss_pred             Eecc-CCcc-ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           85 VSQF-NGSQ-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        85 ~~~~-~~~~-~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      .... +... ........+. +|.+|+......+            ..++.|+.+|+++|+.
T Consensus       147 ~~~~~~~~~~~~~~~sP~v~-~g~v~vg~~~~~~------------~~~g~v~a~D~~tG~~  195 (689)
T 1yiq_A          147 VDTRADHKRSYTITGAPRVV-NGKVVIGNGGAEF------------GVRGYVTAYDAETGKE  195 (689)
T ss_dssp             EECCSCTTSCCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCE
T ss_pred             ecCcCCCCCCccccCCcEEE-CCEEEEEeCCCcc------------CCCCEEEEEECCCCcE
Confidence            2221 1100 0111111222 6778886432111            1346888888888865

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=96.31  E-value=0.15  Score=42.02  Aligned_cols=109  Identities=15%  Similarity=0.194  Sum_probs=59.7

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE--Eecccc----------CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE--DWHQVG----------SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~--~~~~~~----------~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      +|.||++..++.|+.+|. +|+..  .-....          .... +++++ ++++ |+......++.+|. +| ...-
T Consensus        66 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v-~v~~~dg~l~alD~~tG~~~W~  142 (668)
T 1kv9_A           66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKV-YVGTLDGRLIALDAKTGKAIWS  142 (668)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEE-EEECTTSEEEEEETTTCCEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCcc-ceEEE-CCEE-EEEcCCCEEEEEECCCCCEeee
Confidence            788999888889999995 67532  111100          0123 55663 4566 88766667899995 78 3322


Q ss_pred             EeccCCc-cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           85 VSQFNGS-QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        85 ~~~~~~~-~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      ....... .........+. +|.+|+......+            ..++.|+.+|+++|+.
T Consensus       143 ~~~~~~~~~~~~~~~P~v~-~~~v~vg~~~~~~------------~~~g~v~a~D~~tG~~  190 (668)
T 1kv9_A          143 QQTTDPAKPYSITGAPRVV-KGKVIIGNGGAEY------------GVRGFVSAYDADTGKL  190 (668)
T ss_dssp             EECSCTTSSCBCCSCCEEE-TTEEEECCBCTTT------------CCBCEEEEEETTTCCE
T ss_pred             eccCCCCCcceecCCCEEE-CCEEEEeCCCCCc------------CCCCEEEEEECCCCcE
Confidence            2221110 00111112222 5678886432111            1246888888888765

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=96.29  E-value=0.33  Score=39.14  Aligned_cols=16  Identities=13%  Similarity=-0.020  Sum_probs=13.2

Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      .+++++|+.+.+|+..
T Consensus       389 ~~~a~dp~~g~~yv~~  404 (571)
T 2ad6_A          389 GVDSYDPESRTLYAGL  404 (571)
T ss_dssp             CBCEEETTTTEEEEEE
T ss_pred             CCceECCCCCEEEEEc
Confidence            3589999999999964

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=96.11  E-value=0.0032  Score=47.96  Aligned_cols=128  Identities=20%  Similarity=0.186  Sum_probs=46.4

Q ss_pred             eEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEe-CCCeEEEEcc-CC-c-EEEEecc
Q 030700           14 DVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCD-SQQGLLKVSE-EG-V-TVLVSQF   88 (173)
Q Consensus        14 ~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~-~~~~i~~~~~-~g-~-~~~~~~~   88 (173)
                      ++++ .++.+|++..++.|+.+|. +|+..-.... +... ...+..++++ |++. ....++.++. +| . ..+....
T Consensus         4 sP~v-~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~~~-s~p~~~~g~~-~v~~s~dg~l~a~d~~tG~~~w~~~~~~   79 (369)
T 2hz6_A            4 TVTL-PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DPVL-QVPTHVEEPA-FLPDPNDGSLYTLGSKNNEGLTKLPFTI   79 (369)
T ss_dssp             -----CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CCSC-CCC-----CC-EEECTTTCCEEEC-----CCSEECSCCH
T ss_pred             CCee-eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CCce-ecceEcCCCE-EEEeCCCCEEEEEECCCCceeeeeeccC
Confidence            3444 3678999988899999994 6764321122 2222 3333456667 6653 3345777775 66 2 2221110


Q ss_pred             CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEE
Q 030700           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVV  168 (173)
Q Consensus        89 ~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv  168 (173)
                      .......|   ++..++.+|++.                  .++.|+.+|+++|+..-...   .+....++|+++.+|+
T Consensus        80 ~~~~~~sp---~~~~~~~v~~g~------------------~dg~v~a~D~~tG~~~w~~~---~~~~~~~~p~~~~v~~  135 (369)
T 2hz6_A           80 PELVQASP---CRSSDGILYMGK------------------KQDIWYVIDLLTGEKQQTLS---SAFADSLSPSTSLLYL  135 (369)
T ss_dssp             HHHHTTCS---CC-----CCCCE------------------EEEEEEEECCC-------------------------EEE
T ss_pred             ccccccCc---eEecCCEEEEEe------------------CCCEEEEEECCCCcEEEEec---CCCcccccccCCEEEE
Confidence            00000111   112345566542                  23678888888776532111   1122344556666776


Q ss_pred             E
Q 030700          169 C  169 (173)
Q Consensus       169 ~  169 (173)
                      +
T Consensus       136 ~  136 (369)
T 2hz6_A          136 G  136 (369)
T ss_dssp             E
T ss_pred             E
Confidence            5

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.97  E-value=0.23  Score=40.43  Aligned_cols=110  Identities=15%  Similarity=0.148  Sum_probs=60.2

Q ss_pred             CCCEEEEcC-CCeEEEEcC--CCcEE--Eecccc----------CccccceEEc-cCCc----EEEEEeCCCeEEEEcc-
Q 030700           20 NGVLYTATG-DGWIKRMHP--NGTWE--DWHQVG----------SQSLLGLTTT-KENN----VIIVCDSQQGLLKVSE-   78 (173)
Q Consensus        20 ~g~l~~~~~-~~~i~~~~~--~g~~~--~~~~~~----------~~p~~gl~~~-~~g~----l~~v~~~~~~i~~~~~-   78 (173)
                      ++.||++.. ++.|+.+|.  +|+..  .-....          .... ++++. .+++    + |+......++.+|. 
T Consensus        62 ~g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~-g~av~p~~g~~~~rV-~v~t~dg~l~AlDa~  139 (599)
T 1w6s_A           62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALI-LKTQLDGNVAALNAE  139 (599)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEE-EEECTTSEEEEEETT
T ss_pred             CCEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCcccccccccccccc-ceEEEecCCcceeEE-EEEcCCCEEEEEECC
Confidence            778999987 789999997  66532  211110          1124 67774 2445    6 88766667999995 


Q ss_pred             CCcEEEEeccCCc-c-ccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           79 EGVTVLVSQFNGS-Q-LRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        79 ~g~~~~~~~~~~~-~-~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      +|........... . ........+. +|.+|+......+            ..++.|+.+|+++|+.
T Consensus       140 TG~~~W~~~~~~~~~~~~~~ssP~v~-~g~V~vg~~g~e~------------g~~g~v~A~D~~TG~~  194 (599)
T 1w6s_A          140 TGETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAEL------------GVRGYLTAYDVKTGEQ  194 (599)
T ss_dssp             TCCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGGG------------TCCCEEEEEETTTCCE
T ss_pred             CCCEEEeecCCCCCccceeecCCEEE-CCEEEEEeccccc------------CCCCeEEEEECCCCcE
Confidence            7822222211110 0 0011111222 5778886421101            1246888888887765

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=95.88  E-value=0.044  Score=44.55  Aligned_cols=60  Identities=22%  Similarity=0.472  Sum_probs=44.6

Q ss_pred             CccCCcceEEEcCCCCEEEEc-CC------------CeEEEEcC-CCcEEEecc--ccCccccceEEccCCcEEEEE
Q 030700            7 GIVNHPEDVSVDGNGVLYTAT-GD------------GWIKRMHP-NGTWEDWHQ--VGSQSLLGLTTTKENNVIIVC   67 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~-~~------------~~i~~~~~-~g~~~~~~~--~~~~p~~gl~~~~~g~l~~v~   67 (173)
                      +.+..|..|++++.|+||++. .+            ..++..++ .|++.++..  ...... |++|++|++.||+.
T Consensus       473 ~~f~~PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~T-G~~fspDg~tlfvn  548 (592)
T 3zwu_A          473 NMFNSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVT-GISFSPDQKTLFVG  548 (592)
T ss_dssp             TCCCCEEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEE-EEEECTTSSEEEEE
T ss_pred             CCccCCcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCc-CeeECCCCCEEEEE
Confidence            357899999999999999765 21            34677775 477766543  234577 99999999987776

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.47  E-value=0.19  Score=40.71  Aligned_cols=67  Identities=12%  Similarity=0.109  Sum_probs=43.4

Q ss_pred             EEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEccC-----------C--cEEEEeccCCccccCCccEEEcCCCc
Q 030700           41 WEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEE-----------G--VTVLVSQFNGSQLRFANDVIEASDGS  106 (173)
Q Consensus        41 ~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~-----------g--~~~~~~~~~~~~~~~~~~l~~~~dG~  106 (173)
                      ...+.+.+..|+ |+-++|||+.++++.... .+-.++-+           .  ...+....-|   ..|-..++|++|+
T Consensus       315 ~~~~iP~pksPH-Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~G---lGPlHt~Fd~~G~  390 (638)
T 3sbq_A          315 FTRYVPVPKNPH-GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELG---LGPLHTTFDGRGN  390 (638)
T ss_dssp             SEEEEEESSSCC-CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCC---SCEEEEEECSSSE
T ss_pred             eEEEEeCCCCCc-ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCC---CcccEEEECCCCc
Confidence            334456677899 999999999966665543 34434311           1  1112222222   5789999999999


Q ss_pred             EEEEe
Q 030700          107 LYFTV  111 (173)
Q Consensus       107 ~~v~~  111 (173)
                      .|.+-
T Consensus       391 aYTtl  395 (638)
T 3sbq_A          391 AYTTL  395 (638)
T ss_dssp             EEEEE
T ss_pred             eEeee
Confidence            99985

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=95.30  E-value=0.52  Score=36.22  Aligned_cols=122  Identities=9%  Similarity=0.084  Sum_probs=65.3

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCC-Cc---------EE--EeccccCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPN-GT---------WE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~---------~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      ....-|++.+...++++....++..++.+ .+         ..  ...+... +. .++|  ++++|+++ ...++..++
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~-~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKEIPD-VI-FVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EE-EEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEeeCCC-ee-EEEE--CCCEEEEE-cCCcEEEEE
Confidence            45677999997777766633455556521 11         11  1123344 88 9999  77887888 444666666


Q ss_pred             cCC---cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc
Q 030700           78 EEG---VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA  154 (173)
Q Consensus        78 ~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p  154 (173)
                      ...   ..... .+. .   ..+++..-+. ++.+..                  .+|.|+.+|.+++......   ...
T Consensus       113 v~sl~~~~~~~-~~~-~---~v~~i~~~~p-~~av~~------------------~dG~L~v~dl~~~~~~~~~---~~V  165 (388)
T 1xip_A          113 LEELSEFRTVT-SFE-K---PVFQLKNVNN-TLVILN------------------SVNDLSALDLRTKSTKQLA---QNV  165 (388)
T ss_dssp             SSSTTCEEEEE-ECS-S---CEEEEEECSS-EEEEEE------------------TTSEEEEEETTTCCEEEEE---ESE
T ss_pred             chhhhccCccc-eee-c---ceeeEEecCC-CEEEEE------------------CCCCEEEEEccCCcccccc---CCc
Confidence            432   11111 111 1   1223332222 233332                  3478888887766544332   345


Q ss_pred             ceEEEccCC
Q 030700          155 NGVALSEDE  163 (173)
Q Consensus       155 ~gi~~~~dg  163 (173)
                      ..++|||+|
T Consensus       166 s~v~WSpkG  174 (388)
T 1xip_A          166 TSFDVTNSQ  174 (388)
T ss_dssp             EEEEECSSE
T ss_pred             eEEEEcCCc
Confidence            678888887

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=95.13  E-value=1.1  Score=36.52  Aligned_cols=16  Identities=0%  Similarity=-0.008  Sum_probs=13.2

Q ss_pred             ceEEEccCCCEEEEEe
Q 030700          155 NGVALSEDERFLVVCE  170 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~  170 (173)
                      .+++++|+.+.+|+..
T Consensus       396 ~~~a~dp~~~~~yv~~  411 (599)
T 1w6s_A          396 GHDSYDPKRELFFMGI  411 (599)
T ss_dssp             CBCEEETTTTEEEEEE
T ss_pred             CCccCCCCCCEEEEec
Confidence            4689999999999853

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=95.04  E-value=0.84  Score=34.81  Aligned_cols=129  Identities=13%  Similarity=0.074  Sum_probs=67.6

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCC-CcE----EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--cE
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN-GTW----EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~----~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~~   82 (173)
                      ...+++++ ++.++.+..++.|..|+.. +..    ........... .+++  ++++++++.....+..++. ++  ..
T Consensus       215 ~v~~l~~~-~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~  290 (435)
T 1p22_A          215 AVLHLRFN-NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDF--DDKYIVSASGDRTIKVWNTSTCEFVR  290 (435)
T ss_dssp             CEEEEECC-TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEE-EEEE--ETTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             cEEEEEEc-CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEE-EEEe--CCCEEEEEeCCCeEEEEECCcCcEEE
Confidence            34556654 3355555678888888853 322    12222233445 6666  5567455554444555553 44  33


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEcc
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSE  161 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~  161 (173)
                      .+.. ..    .....+.+  ++.++++-                 ..++.|..+|..+++......+ ......+++  
T Consensus       291 ~~~~-~~----~~v~~~~~--~~~~l~~g-----------------~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~--  344 (435)
T 1p22_A          291 TLNG-HK----RGIACLQY--RDRLVVSG-----------------SSDNTIRLWDIECGACLRVLEGHEELVRCIRF--  344 (435)
T ss_dssp             EEEC-CS----SCEEEEEE--ETTEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEC--
T ss_pred             EEcC-CC----CcEEEEEe--CCCEEEEE-----------------eCCCeEEEEECCCCCEEEEEeCCcCcEEEEEe--
Confidence            3321 11    23344555  35555542                 2347888899887765444433 334456666  


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      +++.|+++
T Consensus       345 ~~~~l~sg  352 (435)
T 1p22_A          345 DNKRIVSG  352 (435)
T ss_dssp             CSSEEEEE
T ss_pred             cCCEEEEE
Confidence            56666554

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=94.88  E-value=1.3  Score=36.32  Aligned_cols=14  Identities=0%  Similarity=0.173  Sum_probs=12.1

Q ss_pred             eEEEccCCCEEEEE
Q 030700          156 GVALSEDERFLVVC  169 (173)
Q Consensus       156 gi~~~~dg~~lyv~  169 (173)
                      +++++|+.+.+||.
T Consensus       385 ~~a~dp~~g~~yv~  398 (668)
T 1kv9_A          385 SMSFNPGTGLVYIP  398 (668)
T ss_dssp             CCEEETTTTEEEEE
T ss_pred             cceECCCCCEEEEe
Confidence            48999999999984

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=94.52  E-value=0.5  Score=35.75  Aligned_cols=99  Identities=10%  Similarity=0.017  Sum_probs=53.3

Q ss_pred             CCEEEEc-CCCeEEEEcCC-CcEEE---ec---cccCccccceEEcc--------CCcEEEEEeCCCeEEEEc-c-CC--
Q 030700           21 GVLYTAT-GDGWIKRMHPN-GTWED---WH---QVGSQSLLGLTTTK--------ENNVIIVCDSQQGLLKVS-E-EG--   80 (173)
Q Consensus        21 g~l~~~~-~~~~i~~~~~~-g~~~~---~~---~~~~~p~~gl~~~~--------~g~l~~v~~~~~~i~~~~-~-~g--   80 (173)
                      +.+.++. .++.|..|+.+ +....   +.   .+.+..+ .++|+|        |+++ +++...++.++++ . ++  
T Consensus       101 ~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~-~v~~~p~~~~~~~~d~~~-las~s~D~tv~~Wd~~~~~~  178 (393)
T 4gq1_A          101 SLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVN-DIDIADVYSADNRLAEQV-IASVGDDCTLIIWRLTDEGP  178 (393)
T ss_dssp             EEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEE-EEEEEEEECTTCSEEEEE-EEEEETTSEEEEEEEETTEE
T ss_pred             CCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceE-EEEEccccccccCCCCCE-EEEEECCCeEEEEECCCCce
Confidence            3334433 67778777753 33221   11   1234456 899986        7788 5554455555554 2 44  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      ...+... .    .....++++|++. ++++-                 ..++.|..+|..+++
T Consensus       179 ~~~~~~~-~----~~v~~v~~~p~~~~~l~~~-----------------~~d~~v~~wd~~t~~  220 (393)
T 4gq1_A          179 ILAGYPL-S----SPGISVQFRPSNPNQLIVG-----------------ERNGNIRIFDWTLNL  220 (393)
T ss_dssp             EEEEEEC-S----SCEEEEEEETTEEEEEEEE-----------------ETTSEEEEEETTCCC
T ss_pred             eeeecCC-C----CCcEEEEECCCCCceEEec-----------------CCCCEEEEEECCCCc
Confidence            2222221 1    2456799999874 44442                 134677777766543

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=94.50  E-value=1.3  Score=35.77  Aligned_cols=58  Identities=14%  Similarity=0.262  Sum_probs=37.0

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE--EeccccC--------ccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE--DWHQVGS--------QSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~--~~~~~~~--------~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      +|.+|++...+.|+.+|. +|+..  .-.....        ... ++++ .++++ |+......++.+|. +|
T Consensus        68 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~-g~a~-~~~~v-~~~t~dg~l~AlD~~TG  137 (582)
T 1flg_A           68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAI-YGDKV-FFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEE-ETTEE-EEEETTTEEEEEESSSC
T ss_pred             CCEEEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCC-ccEE-ECCEE-EEEeCCCEEEEEECCCC
Confidence            789999886556999996 67632  2111110        124 5666 45566 88766677999995 78

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=94.35  E-value=0.18  Score=42.08  Aligned_cols=102  Identities=8%  Similarity=0.120  Sum_probs=57.0

Q ss_pred             cccceEEc-cCCcEEEE-EeCC-C---eEEEEccC-CcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccce
Q 030700           51 SLLGLTTT-KENNVIIV-CDSQ-Q---GLLKVSEE-GVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYY  122 (173)
Q Consensus        51 p~~gl~~~-~~g~l~~v-~~~~-~---~i~~~~~~-g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~  122 (173)
                      .. +.+++ |||+++.+ .+.. .   .|+.++.+ |.+.+.....    ....+++++|||+ |+++....        
T Consensus       176 ~~-~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~--------  242 (751)
T 2xe4_A          176 VM-EVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDE--------  242 (751)
T ss_dssp             EE-EEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECT--------
T ss_pred             Ee-eeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECC--------
Confidence            45 78899 99985444 4432 1   37777743 3121111111    1235789999995 66653210        


Q ss_pred             eeecccCCCceEEEEcCCCCee--EEeec--cccCcceEEEccCCCEEEEEe
Q 030700          123 LDLVSGEPHGVLLKYDPSTNQT--SLVLD--GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       123 ~~~~~~~~~~~v~~~d~~~~~~--~~~~~--~~~~p~gi~~~~dg~~lyv~~  170 (173)
                           ......|++++..++..  ..+..  ....-.++.|||||++|+++.
T Consensus       243 -----~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~  289 (751)
T 2xe4_A          243 -----TLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGS  289 (751)
T ss_dssp             -----TCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEE
T ss_pred             -----CCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEe
Confidence                 00114789999876542  23322  112334688999999888764

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=94.09  E-value=1.5  Score=33.44  Aligned_cols=62  Identities=16%  Similarity=0.070  Sum_probs=35.2

Q ss_pred             EEcCCCCEE-EEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           16 SVDGNGVLY-TATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        16 ~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ++..++..+ ++..++.|..|+. +++... +........ .+++  ++++++.+.....+...+. ++
T Consensus       138 ~~~~d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~--~~~~l~sg~~dg~i~vwd~~~~  203 (435)
T 1p22_A          138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVL-CLQY--DERVIITGSSDSTVRVWDVNTG  203 (435)
T ss_dssp             EEECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEE-EEEC--CSSEEEEEETTSCEEEEESSSC
T ss_pred             EEEECCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEE-EEEE--CCCEEEEEcCCCeEEEEECCCC
Confidence            444566555 4558899999985 455443 323334455 6666  6677455544444555553 45

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=93.97  E-value=1.6  Score=33.50  Aligned_cols=128  Identities=9%  Similarity=0.096  Sum_probs=71.9

Q ss_pred             cCCcceEEEcCCCCEEEEcCCCeEEEEcCCC--cEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700            9 VNHPEDVSVDGNGVLYTATGDGWIKRMHPNG--TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g--~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      ++.+..|++ .+..|+++ .++.|+.|+...  ............. .+.+.+. ++ .++.....++.++- ++ ...+
T Consensus        87 lp~V~~l~f-d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~-~i~~~~p-~~-av~~~dG~L~v~dl~~~~~~~~  161 (388)
T 1xip_A           87 IPDVIFVCF-HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVF-QLKNVNN-TL-VILNSVNDLSALDLRTKSTKQL  161 (388)
T ss_dssp             CTTEEEEEE-ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEE-EEEECSS-EE-EEEETTSEEEEEETTTCCEEEE
T ss_pred             CCCeeEEEE-CCCEEEEE-cCCcEEEEEchhhhccCccceeeccee-eEEecCC-CE-EEEECCCCEEEEEccCCccccc
Confidence            445888999 33467777 668899998432  1111111111233 4444433 35 55555555666664 44 4332


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee--EEee-------c---ccc
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT--SLVL-------D---GLY  152 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~--~~~~-------~---~~~  152 (173)
                      .        .....++++|+| +.++.                  .+|.+..|++++++.  ....       .   +-.
T Consensus       162 ~--------~~Vs~v~WSpkG-~~vg~------------------~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~  214 (388)
T 1xip_A          162 A--------QNVTSFDVTNSQ-LAVLL------------------KDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEY  214 (388)
T ss_dssp             E--------ESEEEEEECSSE-EEEEE------------------TTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTS
T ss_pred             c--------CCceEEEEcCCc-eEEEE------------------cCCcEEEEcCCCccccccceecCCcccccccCCCe
Confidence            2        256789999999 55543                  336777778876664  2222       1   123


Q ss_pred             CcceEEEccCCCEEEE
Q 030700          153 FANGVALSEDERFLVV  168 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv  168 (173)
                      .+..|+|.++++++.+
T Consensus       215 ~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          215 SPLSVTILSPQDFLAV  230 (388)
T ss_dssp             EEEEEEESSSSEEEEE
T ss_pred             eEEEEEEecCCeEEEE
Confidence            4567888888776543

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=93.03  E-value=0.91  Score=37.48  Aligned_cols=79  Identities=16%  Similarity=0.205  Sum_probs=41.5

Q ss_pred             CeEEEEcC-CCcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCc
Q 030700           30 GWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGS  106 (173)
Q Consensus        30 ~~i~~~~~-~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~  106 (173)
                      +.|..+|+ +|+. .|. ....... +-.+...+.++|++.....+..+|. +|.....-.....  ....-+.+..+|+
T Consensus       455 g~l~A~D~~tG~~-~W~~~~~~~~~-~g~~~tagglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~--~~~~p~ty~~~G~  530 (689)
T 1yiq_A          455 GKLIAWDPVKQQA-AWEVPYVTIFN-GGTLSTAGNLVFEGSADGRVIAYAADTGEKLWEQPAASG--VMAAPVTYSVDGE  530 (689)
T ss_dssp             EEEEEEETTTTEE-EEEEEESSSCC-CCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSC--CCSCCEEEEETTE
T ss_pred             eeEEEEECCCCCe-EeEccCCCCcc-CccceECCCEEEEECCCCcEEEEECCCCccceeeeCCCC--cccCceEEEECCE
Confidence            56888886 4543 332 2222122 3344555566577755556777774 6722221111111  1223377778999


Q ss_pred             EEEEeC
Q 030700          107 LYFTVS  112 (173)
Q Consensus       107 ~~v~~~  112 (173)
                      .||+..
T Consensus       531 qyv~~~  536 (689)
T 1yiq_A          531 QYVTFM  536 (689)
T ss_dssp             EEEEEE
T ss_pred             EEEEEE
Confidence            998753

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=92.91  E-value=2.4  Score=32.23  Aligned_cols=84  Identities=13%  Similarity=0.048  Sum_probs=44.7

Q ss_pred             ceEEcc---CCcEEEEEeCCCeEEEEc-c-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeec
Q 030700           54 GLTTTK---ENNVIIVCDSQQGLLKVS-E-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        54 gl~~~~---~g~l~~v~~~~~~i~~~~-~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~  126 (173)
                      .++|++   ++.+ +++...++.+++. . +|  ...+...  .........++++|+|.++++.... .    ....+.
T Consensus       183 ~l~fs~~~g~~~~-LaSgS~D~TIkIWDl~TGk~l~tL~g~--~~~v~~v~~vafSpdG~~lvs~s~~-~----~~w~la  254 (356)
T 2w18_A          183 ILTFAEVQGMQEA-LLGTTIMNNIVIWNLKTGQLLKKMHID--DSYQASVCHKAYSEMGLLFIVLSHP-C----AKESES  254 (356)
T ss_dssp             EEEEEEEETSTTE-EEEEETTSEEEEEETTTCCEEEEEECC--C---CCCEEEEEEETTEEEEEEC--------------
T ss_pred             eEEeeccCCCCce-EEEecCCCcEEEEECCCCcEEEEEcCC--CcceeeeEEEEECCCCCEEEEeccC-C----Ccceee
Confidence            567776   6687 6665555666655 3 56  4444321  1112355667899999877653220 0    001223


Q ss_pred             ccCCCceEEEEcCCCCeeE
Q 030700          127 SGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~  145 (173)
                      .+..++++..+|+.+++..
T Consensus       255 SGs~D~tIklWd~~tgk~l  273 (356)
T 2w18_A          255 LRSPVFQLIVINPKTTLSV  273 (356)
T ss_dssp             ---CCEEEEEEETTTTEEE
T ss_pred             ccCCCcEEEEEECCCCEEE
Confidence            4456678888898887643

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=92.52  E-value=1.2  Score=35.95  Aligned_cols=79  Identities=16%  Similarity=0.254  Sum_probs=40.4

Q ss_pred             CCeEEEEcC-CCcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCC
Q 030700           29 DGWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASD  104 (173)
Q Consensus        29 ~~~i~~~~~-~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~d  104 (173)
                      .+.|+.+|+ +|+.. |. +.......+...-.+| ++|++.....+..+|. +| +..-... ...  ....-+++..+
T Consensus       465 ~G~l~A~D~~tG~~~-W~~~~~~~~~~g~~~tagg-lvf~g~~dg~l~A~D~~tG~~lW~~~~-~~g--~~a~P~~y~~~  539 (582)
T 1flg_A          465 VGSLRAMDPVSGKVV-WEHKEHLPLWAGVLATAGN-LVFTGTGDGYFKAFDAKSGKELWKFQT-GSG--IVSPPITWEQD  539 (582)
T ss_dssp             SEEEEEECTTTCCEE-EEEEESSCCCSCCEEETTT-EEEEECTTSEEEEEETTTCCEEEEEEC-SSC--CCSCCEEEEET
T ss_pred             cceEEEEECCCCCEE-EEecCCCCCcccceEeCCC-EEEEECCCCcEEEEECCCCCEEEEecC-CCC--cccCceEEEEC
Confidence            467888885 56532 21 1111112022222444 4487766566777885 67 3222222 111  12233677789


Q ss_pred             CcEEEEeC
Q 030700          105 GSLYFTVS  112 (173)
Q Consensus       105 G~~~v~~~  112 (173)
                      |++||+..
T Consensus       540 G~qYv~~~  547 (582)
T 1flg_A          540 GEQYLGVT  547 (582)
T ss_dssp             TEEEEEEE
T ss_pred             CEEEEEEE
Confidence            99998753

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=91.93  E-value=5  Score=33.68  Aligned_cols=101  Identities=11%  Similarity=0.167  Sum_probs=57.4

Q ss_pred             CCcceEEEcCC--CCEEEEcCCCeEEEEcCCC-cEEEecccc-------CccccceEEccC-CcEEEEEeCC------Ce
Q 030700           10 NHPEDVSVDGN--GVLYTATGDGWIKRMHPNG-TWEDWHQVG-------SQSLLGLTTTKE-NNVIIVCDSQ------QG   72 (173)
Q Consensus        10 ~~p~~l~~~~~--g~l~~~~~~~~i~~~~~~g-~~~~~~~~~-------~~p~~gl~~~~~-g~l~~v~~~~------~~   72 (173)
                      ....+|+++|.  +.+|+....+.|+|-+-.| .+..+....       .... .|++++. .+.+|++...      .+
T Consensus        15 g~i~~i~~~p~~~~~~~a~~~~ggv~rS~DgG~tW~~~~~~~~~~~~~~~~i~-~ia~dp~~~~~i~~~~g~~~~~~~~~   93 (789)
T 1sqj_A           15 GYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYVGDEWAA   93 (789)
T ss_dssp             SCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCTTSSCCE
T ss_pred             CcEEEEEECCCCCCEEEEEecCCCEEEecCCCCCeeECccCCCcccccCCcee-EEEECCCCCCEEEEEeCccCCCcccE
Confidence            46788999983  6889887777899886445 466653321       2355 7888873 3444876533      34


Q ss_pred             EEEEccCC--cEEEEeccC-C--ccc-cCCccEEEcCC--CcEEEEe
Q 030700           73 LLKVSEEG--VTVLVSQFN-G--SQL-RFANDVIEASD--GSLYFTV  111 (173)
Q Consensus        73 i~~~~~~g--~~~~~~~~~-~--~~~-~~~~~l~~~~d--G~~~v~~  111 (173)
                      |++-.+.|  .+.+..... +  .+. .....|+++|.  +.+|+..
T Consensus        94 v~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~iav~p~~~~~v~~g~  140 (789)
T 1sqj_A           94 FYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  140 (789)
T ss_dssp             EEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEEETTEEEEEEEEC
T ss_pred             EEEECCCCCcceeccCCcccCccCCCccceeEEEEcCCCCCEEEEEe
Confidence            55444455  333322111 0  000 12356899873  3577763

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=90.85  E-value=4.2  Score=30.84  Aligned_cols=66  Identities=9%  Similarity=0.040  Sum_probs=35.3

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      ...+++++ +..++.+..++.|..|+. +++.. .+........ .+.+++  +.++++.....+..++. ++
T Consensus       161 ~v~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~-~~~~~~--~~l~s~s~dg~i~~wd~~~~  229 (445)
T 2ovr_B          161 GVWSSQMR-DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVR-CMHLHE--KRVVSGSRDATLRVWDIETG  229 (445)
T ss_dssp             CEEEEEEE-TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEEET--TEEEEEETTSEEEEEESSSC
T ss_pred             CEEEEEec-CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEE-EEEecC--CEEEEEeCCCEEEEEECCCC
Confidence            34556665 234555557888888885 44433 2323333455 777753  45355554444555553 44

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=90.33  E-value=1.7  Score=32.69  Aligned_cols=21  Identities=24%  Similarity=0.420  Sum_probs=16.6

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCc
Q 030700           20 NGVLYTATGDGWIKRMHP-NGT   40 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~   40 (173)
                      ++.+|+++.+|.|+.+|. +|+
T Consensus        10 ~~~V~v~t~dG~l~Ald~~tG~   31 (339)
T 2be1_A           10 SDILIAADVEGGLHAVDRRNGH   31 (339)
T ss_dssp             EEEEEEEETTSCEEEEETTTTE
T ss_pred             CCEEEEEeCCCeEEEEECCCCc
Confidence            567888888899999985 554

>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase; beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1 b.69.13.1 PDB: 2ebs_A*

Probab=89.39  E-value=8.7  Score=32.23  Aligned_cols=98  Identities=16%  Similarity=0.164  Sum_probs=53.9

Q ss_pred             cceEEEcC--CCCEEEEcCCCeEEEEcCCC-cEEEecccc------CccccceEEcc-CCcEEEEEeCC-CeEEEEccCC
Q 030700           12 PEDVSVDG--NGVLYTATGDGWIKRMHPNG-TWEDWHQVG------SQSLLGLTTTK-ENNVIIVCDSQ-QGLLKVSEEG   80 (173)
Q Consensus        12 p~~l~~~~--~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~------~~p~~gl~~~~-~g~l~~v~~~~-~~i~~~~~~g   80 (173)
                      .+.++++|  .+.+|+....+.|++-.-.| .+..+....      .... .|++++ +++.+|++... .++++-.+.|
T Consensus       123 ~~~iav~p~~~~~v~~g~~~~gl~~S~DgG~TW~~~~~~~~~~~~~~~~~-~i~~~p~~~~~~~~~~~~~~~v~~S~DgG  201 (789)
T 1sqj_A          123 GERLAVNPFNSNEVWMGTRTEGIWKSSDRAKTWTNVTSIPDAFTNGIGYT-SVIFDPERNGTIYASATAPQGMYVTHDGG  201 (789)
T ss_dssp             CCCEEEETTEEEEEEEECSSSCEEEESSTTSSCEEETTSCCCCSTTTCEE-EEEECTTSTTCEEEEESSTTCEEEESSTT
T ss_pred             eeEEEEcCCCCCEEEEEeccCCEEEECCCCcccCCCccCccccCCCCCeE-EEEECCCCCCEEEEEEcCCCeEEEEcCCC
Confidence            35799998  35788876556787764233 355543211      1234 577776 33444887654 4566544445


Q ss_pred             --cEEEEeccCCc-------------cccCCccEEEcC-CCcEEEE
Q 030700           81 --VTVLVSQFNGS-------------QLRFANDVIEAS-DGSLYFT  110 (173)
Q Consensus        81 --~~~~~~~~~~~-------------~~~~~~~l~~~~-dG~~~v~  110 (173)
                        .+.+.....+.             .+..++.++++| ++.+|++
T Consensus       202 ~TW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~l~~~  247 (789)
T 1sqj_A          202 VSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVT  247 (789)
T ss_dssp             SSCEECTTCCCSCCHHHHHTSTTCCCSSSSCEEEEEEECSSEEEEE
T ss_pred             cCcccCCCCcCccccccccccCcccccccccceeEEcCCCCeEEEE
Confidence              33332111110             012347889988 6678887

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=88.82  E-value=0.66  Score=35.02  Aligned_cols=96  Identities=7%  Similarity=0.091  Sum_probs=39.8

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-c-EEEEeccCCccccC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-V-TVLVSQFNGSQLRF   95 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~   95 (173)
                      ++.+|++..++.|+.+|+ +|+..-....   +. ...+.+++..+|++.....++.++. +| . ..+....       
T Consensus        92 ~~~v~~g~~dg~v~a~D~~tG~~~w~~~~---~~-~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-------  160 (369)
T 2hz6_A           92 DGILYMGKKQDIWYVIDLLTGEKQQTLSS---AF-ADSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-------  160 (369)
T ss_dssp             ---CCCCEEEEEEEEECCC--------------------------EEEEEEEEEEECCCSSSSSCCCEEEEEE-------
T ss_pred             CCEEEEEeCCCEEEEEECCCCcEEEEecC---CC-cccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-------
Confidence            456666555667777775 3543211111   11 1223345555477654445777774 66 2 2221100       


Q ss_pred             CccEEEcC----CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           96 ANDVIEAS----DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        96 ~~~l~~~~----dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      ....+++.    ++.+|++.                  .++.|+.+|+.+|+.
T Consensus       161 ~~~~~~~~~~~~~~~v~~~~------------------~dg~v~a~d~~tG~~  195 (369)
T 2hz6_A          161 YAASLPEDDVDYKMSHFVSN------------------GDGLVVTVDSESGDV  195 (369)
T ss_dssp             ECCBCCCCCTTCCCCEEEEE------------------TSCEEEEECTTTCCE
T ss_pred             ccCccccCCccccceEEEEC------------------CCCEEEEEECCCCcE
Confidence            01122233    36677764                  236888899887764

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=87.36  E-value=11  Score=30.75  Aligned_cols=110  Identities=15%  Similarity=0.119  Sum_probs=58.7

Q ss_pred             CcEEEeccccCccccceEEcc-CCcEEEEEeCC------------CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcC
Q 030700           39 GTWEDWHQVGSQSLLGLTTTK-ENNVIIVCDSQ------------QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEAS  103 (173)
Q Consensus        39 g~~~~~~~~~~~p~~gl~~~~-~g~l~~v~~~~------------~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~  103 (173)
                      ++|....+.+..+. +.++.+ +|++ |+....            ..+..+|. .+ .+.+.... ........++++..
T Consensus       176 ~~W~~~~~~P~~~~-~~av~~~~g~l-~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~-~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          176 GRWGPTIDLPIVPA-AAAIEPTSGRV-LMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTV-TKHDMFCPGISMDG  252 (656)
T ss_dssp             CEEEEEEECSSCCS-EEEEETTTTEE-EEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEE-CSCCCSSCEEEECT
T ss_pred             CeeeeeccCCCCce-eEEEEecCCEE-EEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccC-CCCCCccccccCCC
Confidence            34544433333566 777777 8888 665321            13555664 34 32222111 11112344578888


Q ss_pred             CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCc---ceEEEccCCCEEEEE
Q 030700          104 DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA---NGVALSEDERFLVVC  169 (173)
Q Consensus       104 dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p---~gi~~~~dg~~lyv~  169 (173)
                      +|+||+.=..                ....+++||+.+.+-..+.. +..+   ..+++-++++ |||.
T Consensus       253 ~g~lyv~GG~----------------~~~~v~~yd~~t~~W~~~~~-~~~~R~~~s~~~~~dg~-iyv~  303 (656)
T 1k3i_A          253 NGQIVVTGGN----------------DAKKTSLYDSSSDSWIPGPD-MQVARGYQSSATMSDGR-VFTI  303 (656)
T ss_dssp             TSCEEEECSS----------------STTCEEEEEGGGTEEEECCC-CSSCCSSCEEEECTTSC-EEEE
T ss_pred             CCCEEEeCCC----------------CCCceEEecCcCCceeECCC-CCccccccceEEecCCe-EEEE
Confidence            9999997321                12378999998776544432 2222   3456666776 5553

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=84.96  E-value=14  Score=30.08  Aligned_cols=66  Identities=14%  Similarity=0.079  Sum_probs=45.5

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC-------CCcE-------EEeccccCccccceEEccCCcEEEEEeCC-Ce
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-------NGTW-------EDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG   72 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-------~g~~-------~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~   72 (173)
                      +.|.|+-++|+|+ ++++. -...+..++.       ++++       ..-.+.+..|. ..+||++|+. |.+..- +.
T Consensus       323 ksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPl-Ht~Fd~~G~a-YTtlfidSq  400 (638)
T 3sbq_A          323 KNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPL-HTTFDGRGNA-YTTLFIDSQ  400 (638)
T ss_dssp             SSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEE-EEEECSSSEE-EEEETTTTE
T ss_pred             CCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCccc-EEEECCCCce-Eeeeeecce
Confidence            7899999999995 55665 4556666652       2222       22234466898 9999999976 988743 56


Q ss_pred             EEEEc
Q 030700           73 LLKVS   77 (173)
Q Consensus        73 i~~~~   77 (173)
                      +++++
T Consensus       401 vvkWn  405 (638)
T 3sbq_A          401 VVKWN  405 (638)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            77765

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	173
d1v04a_	340	b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PO	2e-17

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 340

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

 Score = 75.9 bits (186), Expect = 2e-17
 Identities = 33/199 (16%), Positives = 67/199 (33%), Gaps = 33/199 (16%)

Query: 6   EGIVNHPEDVSVDGNGVLYTATGDGWIKRM----------------HPNGTWEDWHQVGS 49
           +GI N  ED+ +  NG+ + ++G  +   M                       +   +G+
Sbjct: 31  KGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGN 90

Query: 50  Q------SLLGLTTTKEN---------NVIIVCDSQQGLLKVSEEGVTVLVSQFNGSQLR 94
                  +  G++T  ++         N      + +      EE   + +       L 
Sbjct: 91  TLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLP 150

Query: 95  FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFA 154
             ND++       Y T       P     ++  G     +  Y P+     +V +G  FA
Sbjct: 151 SVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV--RVVAEGFDFA 208

Query: 155 NGVALSEDERFLVVCESWK 173
           NG+ +S D +++ + E   
Sbjct: 209 NGINISPDGKYVYIAELLA 227

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	173
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.93
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	99.83
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.8
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.75
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	99.74
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.73
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.72
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	99.7
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.68
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.68
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.67
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	99.67
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	99.63
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	99.62
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	99.61
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.53
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	99.39
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.32
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.23
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.23
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.14
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.12
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.05
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.04
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.04
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.03
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.03
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.93
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.86
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.85
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	98.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.65
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.65
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.62
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.62
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	98.6
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	98.58
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.55
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.53
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.52
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	98.52
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.51
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	98.48
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	98.48
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	98.47
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.45
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	98.44
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	98.43
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	98.28
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	98.2
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	98.2
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	98.15
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	98.11
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	98.09
d1tbga_	340	beta1-subunit of the signal-transducing G protein	98.07
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	98.05
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	97.96
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	97.85
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.73
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.67
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.4
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.38
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	97.35
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	97.22
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.19
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	97.08
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.04
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	97.02
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	96.97
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	96.93
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	96.82
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	96.66
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.54
d1tl2a_	235	Tachylectin-2 {Japanese horseshoe crab (Tachypleus	96.25
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	96.0
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.9
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	95.81
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	95.67
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.55
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.42
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.39
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.16
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	94.96
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	94.27
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	88.53
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	87.75
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	84.53
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	84.32
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	82.66
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	81.49
d2ebsa1	427	Oligoxyloglucan reducing end-specific cellobiohydr	80.47

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.93  E-value=2.3e-24  Score=161.12  Aligned_cols=166  Identities=23%  Similarity=0.322  Sum_probs=127.0

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcC--------CCeEEEEcCCCc-EEEecc-----ccCccccceEEccCCcEEEEE
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATG--------DGWIKRMHPNGT-WEDWHQ-----VGSQSLLGLTTTKENNVIIVC   67 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~--------~~~i~~~~~~g~-~~~~~~-----~~~~p~~gl~~~~~g~l~~v~   67 (173)
                      +++.++ +.+|||++++++|+||+++.        +++|+++++++. ...+..     ..+.|+ ||+++++|+++|++
T Consensus        11 ~~v~~~-~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~-Gl~~~~dg~~l~va   88 (314)
T d1pjxa_          11 TKVTED-IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPA-GCQCDRDANQLFVA   88 (314)
T ss_dssp             EEEECC-CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEE-EEEECSSSSEEEEE
T ss_pred             EEeecC-CCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcce-eEEEeCCCCEEEEE
Confidence            567778 89999999999999998762        467999997653 433321     234699 99999999876999


Q ss_pred             eCCCeEEEEccCC-cEE-EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           68 DSQQGLLKVSEEG-VTV-LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        68 ~~~~~i~~~~~~g-~~~-~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      +..+++++++.+| ... +....++.+++.||+++++++|++|||+.........  .......+.++||+++++ ++..
T Consensus        89 d~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~--~~~~~~~~~G~v~~~~~d-g~~~  165 (314)
T d1pjxa_          89 DMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPAD--YTRSMQEKFGSIYCFTTD-GQMI  165 (314)
T ss_dssp             ETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSC--CCBTTSSSCEEEEEECTT-SCEE
T ss_pred             ECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCccccc--ccceeccCCceEEEEeec-Ccee
Confidence            9888999999887 443 3344567778899999999999999998653322211  111223456899999998 6677


Q ss_pred             EeeccccCcceEEEccCCC----EEEEEecC
Q 030700          146 LVLDGLYFANGVALSEDER----FLVVCESW  172 (173)
Q Consensus       146 ~~~~~~~~p~gi~~~~dg~----~lyv~~~~  172 (173)
                      .+..++..||||+|+++++    +|||+++.
T Consensus       166 ~~~~~~~~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         166 QVDTAFQFPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             EEEEEESSEEEEEEEECTTSCEEEEEEEETT
T ss_pred             EeeCCcceeeeeEECCCCCcceeEEEEEeec
Confidence            7788899999999999875    79999874

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.90  E-value=1.9e-22  Score=150.82  Aligned_cols=147  Identities=24%  Similarity=0.387  Sum_probs=116.1

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCCCc-EE-EeccccCccccceEEccCCcEEEEEeCC-----CeEEEEccCC--
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPNGT-WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ-----QGLLKVSEEG--   80 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~-~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~-----~~i~~~~~~g--   80 (173)
                      .+||++||++|+||+++ .+++|+|++++++ .. .+.+....|+ ||+++++|++ |+|+..     .+++.++..+  
T Consensus        41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~-gla~~~dG~l-~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPA-AIKIHKDGRL-FVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEE-EEEECTTSCE-EEEECTTSSSCCEEEEECTTSCS
T ss_pred             CcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCee-EEEECCCCCE-EEEecCCCccceeEEEEcCCCce
Confidence            46999999999999998 7889999998875 33 3345567899 9999999999 988743     2577777655  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEc
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALS  160 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~  160 (173)
                      ...+...  ......||+++++++|++|+++....           .....+.+++++++++.++.+..++..||||+|+
T Consensus       119 ~~~~~~~--~~~~~~~nd~~~d~~G~l~vtd~~~~-----------~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s  185 (319)
T d2dg1a1         119 LQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGY-----------STNPLGGVYYVSPDFRTVTPIIQNISVANGIALS  185 (319)
T ss_dssp             CEEEECS--SSSCCCEEEEEECTTSCEEEEECCCB-----------TTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC
T ss_pred             eeeeccC--CCcccCCcceeEEeccceeecccccc-----------cccCcceeEEEecccceeEEEeeccceeeeeeec
Confidence            4444432  23346899999999999999985421           1124578999999977788888889999999999


Q ss_pred             cCCCEEEEEecC
Q 030700          161 EDERFLVVCESW  172 (173)
Q Consensus       161 ~dg~~lyv~~~~  172 (173)
                      ||+++|||+++.
T Consensus       186 ~dg~~lyvad~~  197 (319)
T d2dg1a1         186 TDEKVLWVTETT  197 (319)
T ss_dssp             TTSSEEEEEEGG
T ss_pred             cccceEEEeccc
Confidence            999999999974

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=99.83  E-value=1.9e-19  Score=134.16  Aligned_cols=146  Identities=14%  Similarity=0.147  Sum_probs=111.9

Q ss_pred             cCCcceEEEcCCCCEEEEcC----------------CCeEEEEcCCCcEEEeccccCccccceEEccCCc----EEEEEe
Q 030700            9 VNHPEDVSVDGNGVLYTATG----------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENN----VIIVCD   68 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~----------------~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~----l~~v~~   68 (173)
                      +..|.+++++++|+|||++.                .++|++++++|+...+......|+ ||+++++++    .||+++
T Consensus       116 ~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~~~pN-Gi~~~~d~d~~~~~lyv~d  194 (314)
T d1pjxa_         116 MQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAFQFPN-GIAVRHMNDGRPYQLIVAE  194 (314)
T ss_dssp             CBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEESSEE-EEEEEECTTSCEEEEEEEE
T ss_pred             cCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCcceee-eeEECCCCCcceeEEEEEe
Confidence            56799999999999999972                357999999999887777777899 999998764    449998


Q ss_pred             CCC-eEEEEc--cCC-cE--EEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           69 SQQ-GLLKVS--EEG-VT--VLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        69 ~~~-~i~~~~--~~g-~~--~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      ... .|++++  .+| ..  .+.....+.....|++|++|++|++|+++..                 .++|++|||+++
T Consensus       195 ~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~-----------------~g~I~~~dp~~g  257 (314)
T d1pjxa_         195 TPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWG-----------------SSHIEVFGPDGG  257 (314)
T ss_dssp             TTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTCB
T ss_pred             ecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcC-----------------CCEEEEEeCCCC
Confidence            764 577766  455 22  2222233333357999999999999999643                 379999999977


Q ss_pred             eeEE-eeccccCcceEEEccCCCEEEEEecC
Q 030700          143 QTSL-VLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       143 ~~~~-~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++.. +......|.+++|.||+++|||+++.
T Consensus       258 ~~~~~i~~p~~~~t~~afg~d~~~lyVt~~~  288 (314)
T d1pjxa_         258 QPKMRIRCPFEKPSNLHFKPQTKTIFVTEHE  288 (314)
T ss_dssp             SCSEEEECSSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEEEEEECCCCCEEEEEEeCCCCEEEEEECC
Confidence            6433 44456789999999999999999864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.80  E-value=2.1e-18  Score=127.37  Aligned_cols=151  Identities=13%  Similarity=0.153  Sum_probs=118.6

Q ss_pred             CCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-c
Q 030700            6 EGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-V   81 (173)
Q Consensus         6 ~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~   81 (173)
                      ...+.=-||+.|++ +|.||++| .+++|+++++++...........+. ++++.++|++ +++. .+++++++. +| .
T Consensus        14 ~~~~~LgEgp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~~~~~~~~~-~i~~~~dg~l-~va~-~~gl~~~d~~tg~~   90 (295)
T d2ghsa1          14 ETPMLLGEGPTFDPASGTAWWFNILERELHELHLASGRKTVHALPFMGS-ALAKISDSKQ-LIAS-DDGLFLRDTATGVL   90 (295)
T ss_dssp             CSCCSBEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEEEECSSCEE-EEEEEETTEE-EEEE-TTEEEEEETTTCCE
T ss_pred             CCCCeeeeCCeEECCCCEEEEEECCCCEEEEEECCCCeEEEEECCCCcE-EEEEecCCCE-EEEE-eCccEEeeccccee
Confidence            33333449999998 78999988 7889999997765544445566788 9999999998 7775 468999996 56 7


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEcc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSE  161 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~  161 (173)
                      +.+.....+.+.+.+|++.+|++|++|+++....           +....+.+++++.  +++..+..++..|||+++++
T Consensus        91 ~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~-----------~~~~~g~l~~~~~--g~~~~~~~~~~~~Ng~~~s~  157 (295)
T d2ghsa1          91 TLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-----------AETGAGSIYHVAK--GKVTKLFADISIPNSICFSP  157 (295)
T ss_dssp             EEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-----------CCTTCEEEEEEET--TEEEEEEEEESSEEEEEECT
T ss_pred             eEEeeeecCCCcccceeeEECCCCCEEEEecccc-----------ccccceeEeeecC--CcEEEEeeccCCcceeeecC
Confidence            7777766666778899999999999999974311           1124568888864  67888888899999999999


Q ss_pred             CCCEEEEEecC
Q 030700          162 DERFLVVCESW  172 (173)
Q Consensus       162 dg~~lyv~~~~  172 (173)
                      +++.+|++|+.
T Consensus       158 d~~~l~~~dt~  168 (295)
T d2ghsa1         158 DGTTGYFVDTK  168 (295)
T ss_dssp             TSCEEEEEETT
T ss_pred             CCceEEEeecc
Confidence            99999999984

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.75  E-value=6e-17  Score=117.15  Aligned_cols=143  Identities=19%  Similarity=0.296  Sum_probs=109.4

Q ss_pred             CccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEec--cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC-c
Q 030700            7 GIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG-V   81 (173)
Q Consensus         7 ~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g-~   81 (173)
                      +.+..|.+++++++|++|+++ .+.++++++.++......  .....|. +|+++++|++ |+++.. ..+.+++.++ .
T Consensus        95 ~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~i~~~~~g~~-~v~~~~~~~i~~~d~~~~~  172 (260)
T d1rwia_          95 DGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPD-GVAVDNSGNV-YVTDTDNNRVVKLEAESNN  172 (260)
T ss_dssp             CSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCC-EEEECTTCCE-EEEEGGGTEEEEECTTTCC
T ss_pred             eeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcc-eeeecCCCCE-eeeccccccccccccccce
Confidence            346889999999999999998 667889998776543332  2345799 9999999998 888766 4688888776 3


Q ss_pred             EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-ccccCcceEEEc
Q 030700           82 TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-DGLYFANGVALS  160 (173)
Q Consensus        82 ~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~~~~~p~gi~~~  160 (173)
                      .....   ...+..|++|++|++|+|||++..                 .++|+++++++....... .++..|.+|+++
T Consensus       173 ~~~~~---~~~~~~p~gi~~d~~g~l~vsd~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d  232 (260)
T d1rwia_         173 QVVLP---FTDITAPWGIAVDEAGTVYVTEHN-----------------TNQVVKLLAGSTTSTVLPFTGLNTPLAVAVD  232 (260)
T ss_dssp             EEECC---CSSCCSEEEEEECTTCCEEEEETT-----------------TTEEEEECTTCSCCEECCCCSCCCEEEEEEC
T ss_pred             eeeee---ccccCCCccceeeeeeeeeeeecC-----------------CCEEEEEeCCCCeEEEEccCCCCCeEEEEEe
Confidence            33221   123468999999999999999854                 368999999865544443 457899999999


Q ss_pred             cCCCEEEEEecC
Q 030700          161 EDERFLVVCESW  172 (173)
Q Consensus       161 ~dg~~lyv~~~~  172 (173)
                      ++|. |||+|..
T Consensus       233 ~~g~-l~vad~~  243 (260)
T d1rwia_         233 SDRT-VYVADRG  243 (260)
T ss_dssp             TTCC-EEEEEGG
T ss_pred             CCCC-EEEEECC
Confidence            9986 8999864

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.74  E-value=9.8e-17  Score=116.01  Aligned_cols=157  Identities=16%  Similarity=0.208  Sum_probs=107.3

Q ss_pred             CCcceEEEcCCCCEEEEc--CCCeEEEEcCCCcEEEe--ccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT--GDGWIKRMHPNGTWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~--~~~~i~~~~~~g~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~   84 (173)
                      ..|.+|++|++|++|+++  ..+++.+++..+.....  ......|. |++++++|++ |+++....++++..++ ...+
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~-gvav~~~g~i-~v~d~~~~~i~~~~~~~~~~~   91 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQ-GLAVDGAGTV-YVTDFNNRVVTLAAGSNNQTV   91 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCC-CEEECTTCCE-EEEETTTEEEEECTTCSCCEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCce-EEEEcCCCCE-EEeeeeeceeeeeeeccceee
Confidence            579999999999999977  45788898765543332  23345799 9999999998 9999888888877655 3333


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcC----c----------c----cce-------eeecccCCCceEEEEcC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFT----P----------A----EYY-------LDLVSGEPHGVLLKYDP  139 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~----~----------~----~~~-------~~~~~~~~~~~v~~~d~  139 (173)
                      ..   ...+..|++|+++++|++|+++...+..    .          .    +..       ..++.....++|+++++
T Consensus        92 ~~---~~~~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~  168 (260)
T d1rwia_          92 LP---FDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEA  168 (260)
T ss_dssp             CC---CCSCCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECT
T ss_pred             ee---eeeeeecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeecccccccccccc
Confidence            22   1224689999999999999997543200    0          0    000       11222344568889998


Q ss_pred             CCCeeEEee-ccccCcceEEEccCCCEEEEEecC
Q 030700          140 STNQTSLVL-DGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       140 ~~~~~~~~~-~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++....... ..+..|+||+++++|+ |||++..
T Consensus       169 ~~~~~~~~~~~~~~~p~gi~~d~~g~-l~vsd~~  201 (260)
T d1rwia_         169 ESNNQVVLPFTDITAPWGIAVDEAGT-VYVTEHN  201 (260)
T ss_dssp             TTCCEEECCCSSCCSEEEEEECTTCC-EEEEETT
T ss_pred             ccceeeeeeccccCCCccceeeeeee-eeeeecC
Confidence            755444443 4588999999999986 8999864

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.73  E-value=1.2e-16  Score=117.91  Aligned_cols=139  Identities=22%  Similarity=0.272  Sum_probs=106.2

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEcc---CC-cEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE---EG-VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~---~g-~~~   83 (173)
                      ..+|+++++|+|+||+++ .+++|++++++|+...+....+.|+ +++++++|++ |+++.. +.+..++.   ++ .+.
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~~~~~~~~~~~~~-gla~~~dG~l-~v~~~~~~~~~~~~~~~~~~~~~~  105 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQQIHATVEGKVS-GLAFTSNGDL-VATGWNADSIPVVSLVKSDGTVET  105 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEEECSSEEE-EEEECTTSCE-EEEEECTTSCEEEEEECTTSCEEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCCCEEEEEcCCCCcc-eEEEcCCCCe-EEEecCCceEEEEEecccccceee
Confidence            358999999999999999 6889999999999888777788999 9999999998 888755 34555542   44 555


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-----------ccc
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----------GLY  152 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----------~~~  152 (173)
                      +.....+   ..+++++++++|++|+++..                 .+.++++++.++....+..           ...
T Consensus       106 ~~~~~~~---~~~n~i~~~~~g~~~v~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  165 (302)
T d2p4oa1         106 LLTLPDA---IFLNGITPLSDTQYLTADSY-----------------RGAIWLIDVVQPSGSIWLEHPMLARSNSESVFP  165 (302)
T ss_dssp             EEECTTC---SCEEEEEESSSSEEEEEETT-----------------TTEEEEEETTTTEEEEEEECGGGSCSSTTCCSC
T ss_pred             ccccCCc---cccceeEEccCCCEEeeccc-----------------cccceeeeccCCcceeEecCCccceeeccCccc
Confidence            5443332   57899999999999999743                 3688899888776554432           245


Q ss_pred             CcceEEEccCCCEEEEEecC
Q 030700          153 FANGVALSEDERFLVVCESW  172 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~~~~  172 (173)
                      .++||+++  ++.+|++++.
T Consensus       166 ~~ngi~~~--~~~l~~~~~~  183 (302)
T d2p4oa1         166 AANGLKRF--GNFLYVSNTE  183 (302)
T ss_dssp             SEEEEEEE--TTEEEEEETT
T ss_pred             cccccccc--CCceeeecCC
Confidence            56788774  5679998875

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.72  E-value=5.6e-16  Score=113.06  Aligned_cols=145  Identities=13%  Similarity=0.284  Sum_probs=104.9

Q ss_pred             cCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEE-ec-------------------------------------
Q 030700            5 GEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WH-------------------------------------   45 (173)
Q Consensus         5 ~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~-~~-------------------------------------   45 (173)
                      .+|++..|.+|+++++|+|||+| .+.+|.+++++|+... +.                                     
T Consensus        18 ~~g~f~~P~gvavd~dg~i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~   97 (279)
T d1q7fa_          18 MEGQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQI   97 (279)
T ss_dssp             STTCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEE
T ss_pred             CCCeECCccEEEEcCCCCEEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccc
Confidence            35668999999999999999999 6788999987775321 10                                     


Q ss_pred             -------------cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCcEEE
Q 030700           46 -------------QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGSLYF  109 (173)
Q Consensus        46 -------------~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v  109 (173)
                                   .....|. +++++++|++ |+++.. ..+..++++|  ...+..   ...+..|.+++++++|++|+
T Consensus        98 ~~~~g~~~~~~~~~~~~~p~-~~avd~~G~i-~v~~~~~~~~~~~~~~g~~~~~~g~---~~~~~~~~~i~~d~~g~i~v  172 (279)
T d1q7fa_          98 YNQYGQFVRKFGATILQHPR-GVTVDNKGRI-IVVECKVMRVIIFDQNGNVLHKFGC---SKHLEFPNGVVVNDKQEIFI  172 (279)
T ss_dssp             ECTTSCEEEEECTTTCSCEE-EEEECTTSCE-EEEETTTTEEEEECTTSCEEEEEEC---TTTCSSEEEEEECSSSEEEE
T ss_pred             ccccccceeecCCCcccccc-eeccccCCcE-EEEeeccceeeEeccCCceeecccc---cccccccceeeeccceeEEe
Confidence                         0012267 7888888887 777655 3566667777  333322   22356889999999999999


Q ss_pred             EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--cccCcceEEEccCCCEEEEEecC
Q 030700          110 TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++..                 .++|++||+++..+..+..  .+..|.||+++++|+ +||+|..
T Consensus       173 ~d~~-----------------~~~V~~~d~~G~~~~~~g~~g~~~~P~giavD~~G~-i~Vad~~  219 (279)
T d1q7fa_         173 SDNR-----------------AHCVKVFNYEGQYLRQIGGEGITNYPIGVGINSNGE-ILIADNH  219 (279)
T ss_dssp             EEGG-----------------GTEEEEEETTCCEEEEESCTTTSCSEEEEEECTTCC-EEEEECS
T ss_pred             eecc-----------------ccceeeeecCCceeeeecccccccCCcccccccCCe-EEEEECC
Confidence            9753                 2689999998554544432  377899999999997 9999863

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.70  E-value=7.8e-16  Score=115.51  Aligned_cols=166  Identities=23%  Similarity=0.374  Sum_probs=112.6

Q ss_pred             ecCCccCCcceEEEcCCCCEEEEcC-------------CCeEEEEcCCC---cEEEecc-------ccCccccceEE--c
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTATG-------------DGWIKRMHPNG---TWEDWHQ-------VGSQSLLGLTT--T   58 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~~~-------------~~~i~~~~~~g---~~~~~~~-------~~~~p~~gl~~--~   58 (173)
                      +.++...+||+++.+|+|.+|++..             .|.|+.+|.+.   ....+.-       ....|+ ||.+  +
T Consensus        29 ~i~g~~~G~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~Ph-Gi~l~~~  107 (340)
T d1v04a_          29 LVKGIDNGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPH-GISTFID  107 (340)
T ss_dssp             ECTTCCSCCCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEE-EEEEEEC
T ss_pred             EcCCCCCCcceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceecc-ceeEEEc
Confidence            3456567999999999998886542             37788887432   2322211       123689 9977  4


Q ss_pred             cCCc-EEEEEeCC--C---eEEEEccCC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCC
Q 030700           59 KENN-VIIVCDSQ--Q---GLLKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPH  131 (173)
Q Consensus        59 ~~g~-l~~v~~~~--~---~i~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~  131 (173)
                      .+|+ .|+|.+..  .   .++.++.++ ...+........+..||++++..+|.+|+|+...-........+.....+.
T Consensus       108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~  187 (340)
T d1v04a_         108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAW  187 (340)
T ss_dssp             TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCC
T ss_pred             CCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCc
Confidence            4554 33777652  2   255556555 444455566677789999999999999999754211110111223345667


Q ss_pred             ceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       132 ~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      +.++.+|+  ++.+.++.++..||||+++||+++|||+++.
T Consensus       188 g~v~~~~~--~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~  226 (340)
T d1v04a_         188 SFVTYYSP--NDVRVVAEGFDFANGINISPDGKYVYIAELL  226 (340)
T ss_dssp             EEEEEECS--SCEEEEEEEESSEEEEEECTTSSEEEEEEGG
T ss_pred             eeEEEEcC--CceEEEcCCCCccceeEECCCCCEEEEEeCC
Confidence            89999987  4567788889999999999999999999985

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.68  E-value=2.7e-15  Score=109.33  Aligned_cols=147  Identities=16%  Similarity=0.182  Sum_probs=110.0

Q ss_pred             ecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEEe---ccccCccccceEEccCCcEEEEEeCC-CeEEEEcc
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE   78 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~~---~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~   78 (173)
                      +....+..|.+++++++|.+|+++ ..+++.+++++|+....   ......|. +++++++|++ |+++.. +.|..++.
T Consensus       108 ~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~-~i~~d~~g~i-~v~d~~~~~V~~~d~  185 (279)
T d1q7fa_         108 FGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFPN-GVVVNDKQEI-FISDNRAHCVKVFNY  185 (279)
T ss_dssp             ECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEEECTTTCSSEE-EEEECSSSEE-EEEEGGGTEEEEEET
T ss_pred             cCCCcccccceeccccCCcEEEEeeccceeeEeccCCceeecccccccccccc-eeeeccceeE-Eeeeccccceeeeec
Confidence            344557889999999999999888 66789999999986543   22345788 9999999998 998876 45777778


Q ss_pred             CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--ccCc
Q 030700           79 EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--LYFA  154 (173)
Q Consensus        79 ~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--~~~p  154 (173)
                      +|  ...+..  . ..+..|.+|++|++|++||+|..                .+.+|..+++++..+..+...  ...|
T Consensus       186 ~G~~~~~~g~--~-g~~~~P~giavD~~G~i~Vad~~----------------~~~~v~~f~~~G~~~~~~~~~~~~~~p  246 (279)
T d1q7fa_         186 EGQYLRQIGG--E-GITNYPIGVGINSNGEILIADNH----------------NNFNLTIFTQDGQLISALESKVKHAQC  246 (279)
T ss_dssp             TCCEEEEESC--T-TTSCSEEEEEECTTCCEEEEECS----------------SSCEEEEECTTSCEEEEEEESSCCSCE
T ss_pred             CCceeeeecc--c-ccccCCcccccccCCeEEEEECC----------------CCcEEEEECCCCCEEEEEeCCCCCCCE
Confidence            88  444421  1 23568999999999999999853                234789999874334444433  4678


Q ss_pred             ceEEEccCCCEEEEEecC
Q 030700          155 NGVALSEDERFLVVCESW  172 (173)
Q Consensus       155 ~gi~~~~dg~~lyv~~~~  172 (173)
                      .+|++++||+ |||++..
T Consensus       247 ~~vav~~dG~-l~V~~~n  263 (279)
T d1q7fa_         247 FDVALMDDGS-VVLASKD  263 (279)
T ss_dssp             EEEEEETTTE-EEEEETT
T ss_pred             eEEEEeCCCc-EEEEeCC
Confidence            9999999985 8998753

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=8.2e-15  Score=106.36  Aligned_cols=148  Identities=13%  Similarity=0.091  Sum_probs=108.1

Q ss_pred             eecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-----E-EEeccccCccccceEEccCCcEEEEEeCCC-eE
Q 030700            3 KLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-----W-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GL   73 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-----~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i   73 (173)
                      .+.++ +..+.++++|+ ++.||++| ..+.|++.+.++.     . .........|. ||++|+-++.||+++... .|
T Consensus        24 ~~~~~-~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~-glAvD~~~~~lY~~d~~~~~I  101 (266)
T d1ijqa1          24 SLIPN-LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD-GLAVDWIHSNIYWTDSVLGTV  101 (266)
T ss_dssp             EEECS-CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCC-EEEEETTTTEEEEEETTTTEE
T ss_pred             eeeCC-CCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcc-eEEEeeccceEEEEecCCCEE
Confidence            34444 68899999998 66899998 6778998876542     1 22334456799 999997665559999774 57


Q ss_pred             EEEccCC-c-EEEEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee-c
Q 030700           74 LKVSEEG-V-TVLVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL-D  149 (173)
Q Consensus        74 ~~~~~~g-~-~~~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~-~  149 (173)
                      .+.+.+| . ..+...    ....|.+|++|| +|.+||++..                ..++|+|.++++...+.+. .
T Consensus       102 ~v~~~~g~~~~~~~~~----~~~~P~~l~vd~~~g~ly~~~~~----------------~~~~I~r~~~dGs~~~~l~~~  161 (266)
T d1ijqa1         102 SVADTKGVKRKTLFRE----NGSKPRAIVVDPVHGFMYWTDWG----------------TPAKIKKGGLNGVDIYSLVTE  161 (266)
T ss_dssp             EEEETTSSSEEEEEEC----TTCCEEEEEEETTTTEEEEEECS----------------SSCEEEEEETTSCCEEEEECS
T ss_pred             EeEecCCceEEEEEcC----CCCCcceEEEEcccCeEEEeccC----------------CCcceeEeccCCCceeccccc
Confidence            7777787 3 333321    125799999998 6789999754                2358999999866565554 5


Q ss_pred             cccCcceEEEccCCCEEEEEecC
Q 030700          150 GLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       150 ~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ++..|+||++++.++.||++|..
T Consensus       162 ~~~~p~gl~iD~~~~~lYw~d~~  184 (266)
T d1ijqa1         162 NIQWPNGITLDLLSGRLYWVDSK  184 (266)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETT
T ss_pred             ccceeeEEEeeccccEEEEecCC
Confidence            68999999999999999999875

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=5.2e-15  Score=107.29  Aligned_cols=147  Identities=14%  Similarity=0.135  Sum_probs=112.4

Q ss_pred             ceecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE--EeccccCccccceEEccCCcEEEEEeCCC---eEE
Q 030700            2 IKLGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQ---GLL   74 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---~i~   74 (173)
                      +++....+..|+++|+|. .++||+++ ..++|.+.+++|...  ........|. +|++||...++|+++.+.   .|+
T Consensus        71 ~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~-~l~vdp~~g~ly~t~~~~~~~~I~  149 (263)
T d1npea_          71 TTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPR-GIVTDPVRGNLYWTDWNRDNPKIE  149 (263)
T ss_dssp             EEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEE-EEEEETTTTEEEEEECCSSSCEEE
T ss_pred             EEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCc-EEEEecccCcEEEeecCCCCcEEE
Confidence            344545578999999997 77999998 567899999887532  2233456899 999998766669998653   488


Q ss_pred             EEccCC--cEEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc
Q 030700           75 KVSEEG--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL  151 (173)
Q Consensus        75 ~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~  151 (173)
                      +.+.+|  .+.+..    ..+..|++|++|+. +++||+|..                 .++|.+++.++...+.+..++
T Consensus       150 r~~~dG~~~~~i~~----~~~~~P~glaiD~~~~~lYw~d~~-----------------~~~I~~~~~~g~~~~~v~~~~  208 (263)
T d1npea_         150 TSHMDGTNRRILAQ----DNLGLPNGLTFDAFSSQLCWVDAG-----------------THRAECLNPAQPGRRKVLEGL  208 (263)
T ss_dssp             EEETTSCCCEEEEC----TTCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTEEEEEEEEECC
T ss_pred             EecCCCCCceeeee----ecccccceEEEeecCcEEEEEeCC-----------------CCEEEEEECCCCCeEEEECCC
Confidence            888888  444442    22458999999975 579999753                 368999999877777788888


Q ss_pred             cCcceEEEccCCCEEEEEecC
Q 030700          152 YFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ..|.+|++.  +..|||+|..
T Consensus       209 ~~P~~lav~--~~~lYwtd~~  227 (263)
T d1npea_         209 QYPFAVTSY--GKNLYYTDWK  227 (263)
T ss_dssp             CSEEEEEEE--TTEEEEEETT
T ss_pred             CCcEEEEEE--CCEEEEEECC
Confidence            999999995  5689999864

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=99.67  E-value=4.9e-15  Score=110.07  Aligned_cols=144  Identities=15%  Similarity=0.218  Sum_probs=104.0

Q ss_pred             cCCcceEEEcCCCCEEEEcC-------CCeEEEEcCCCc-EEEeccccCccccceEEccCCcEEEEEeCC-CeEEEEc--
Q 030700            9 VNHPEDVSVDGNGVLYTATG-------DGWIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVS--   77 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~-------~~~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~--   77 (173)
                      ...|.+++++++|++|+++.       .+.+++++++++ +..+......|+ ||+++++++.||+++.. +.|++++  
T Consensus       129 ~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pn-Gia~s~dg~~lyvad~~~~~I~~~d~~  207 (319)
T d2dg1a1         129 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVAN-GIALSTDEKVLWVTETTANRLHRIALE  207 (319)
T ss_dssp             CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEE-EEEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceee-eeeeccccceEEEecccCCceEEEEEc
Confidence            56789999999999999983       356999999885 455556677899 99999999877999976 4677776  


Q ss_pred             cCC-c-EEEEe--ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---
Q 030700           78 EEG-V-TVLVS--QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---  150 (173)
Q Consensus        78 ~~g-~-~~~~~--~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---  150 (173)
                      .++ . .....  .........|++|++|++|+||+++..                 .++|.+|||++..+..+.-.   
T Consensus       208 ~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~-----------------~g~V~~~~p~G~~l~~i~~P~~~  270 (319)
T d2dg1a1         208 DDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG-----------------QGRVLVFNKRGYPIGQILIPGRD  270 (319)
T ss_dssp             TTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET-----------------TTEEEEECTTSCEEEEEECTTGG
T ss_pred             CCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC-----------------CCEEEEECCCCcEEEEEeCCCcC
Confidence            344 2 22111  111122346999999999999999743                 37999999984444444321   


Q ss_pred             ---ccCcceEEEccCCCEEEEEe
Q 030700          151 ---LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 ---~~~p~gi~~~~dg~~lyv~~  170 (173)
                         ...+..++|.+++..+|++.
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~t~  293 (319)
T d2dg1a1         271 EGHMLRSTHPQFIPGTNQLIICS  293 (319)
T ss_dssp             GTCSCBCCEEEECTTSCEEEEEE
T ss_pred             CCcCceeeeEEEeCCCCEEEEEc
Confidence               23467889999888888874

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.63  E-value=3.1e-14  Score=103.09  Aligned_cols=142  Identities=18%  Similarity=0.170  Sum_probs=105.0

Q ss_pred             CcceEEEcC-CCCEEEEc-CCCeEEEEcCCCc-EEEec-cccCccccceEEccCCcEEEEEeCC-CeEEEEccCC--cEE
Q 030700           11 HPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGT-WEDWH-QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSEEG--VTV   83 (173)
Q Consensus        11 ~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~-~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~~g--~~~   83 (173)
                      .+.+|++|. ++.||+++ ..+.|++.+.+|. ...+. .....|. +|++|.-++.||+++.. ..|.+++.+|  .+.
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~-~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~  115 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPE-GIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRV  115 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEE-EEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEecccccc-EEEEeccCCeEEEeccCCCEEEEEecCCceEEE
Confidence            356799997 67899998 6788999987764 33332 3346899 99999755555999976 4688888777  444


Q ss_pred             EEeccCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe-eccccCcceEEEcc
Q 030700           84 LVSQFNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV-LDGLYFANGVALSE  161 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-~~~~~~p~gi~~~~  161 (173)
                      +...    .+..|.+|++|| .|.+|+++...               ...+|+|.++++...+.+ ..++..|+||++++
T Consensus       116 l~~~----~l~~p~~l~vdp~~g~ly~t~~~~---------------~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~  176 (263)
T d1npea_         116 LFDT----GLVNPRGIVTDPVRGNLYWTDWNR---------------DNPKIETSHMDGTNRRILAQDNLGLPNGLTFDA  176 (263)
T ss_dssp             EECS----SCSSEEEEEEETTTTEEEEEECCS---------------SSCEEEEEETTSCCCEEEECTTCSCEEEEEEET
T ss_pred             Eecc----cccCCcEEEEecccCcEEEeecCC---------------CCcEEEEecCCCCCceeeeeecccccceEEEee
Confidence            4332    135799999998 56799997541               235799999986554444 45689999999999


Q ss_pred             CCCEEEEEecC
Q 030700          162 DERFLVVCESW  172 (173)
Q Consensus       162 dg~~lyv~~~~  172 (173)
                      .++.|||+|..
T Consensus       177 ~~~~lYw~d~~  187 (263)
T d1npea_         177 FSSQLCWVDAG  187 (263)
T ss_dssp             TTTEEEEEETT
T ss_pred             cCcEEEEEeCC
Confidence            99999999864

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=99.62  E-value=2.1e-14  Score=105.63  Aligned_cols=142  Identities=17%  Similarity=0.182  Sum_probs=105.5

Q ss_pred             cCCcceEEEcCCCCEEEEcC-------CCeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCC-eEEEEccC-
Q 030700            9 VNHPEDVSVDGNGVLYTATG-------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVSEE-   79 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~~-------~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~~~-   79 (173)
                      ...+.++.+|++|++|+++.       .+.++++. +|+...+......|+ |++++++++.+|+++... .|++++-+ 
T Consensus       102 ~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~-~g~~~~~~~~~~~~N-g~~~s~d~~~l~~~dt~~~~I~~~~~d~  179 (295)
T d2ghsa1         102 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPN-SICFSPDGTTGYFVDTKVNRLMRVPLDA  179 (295)
T ss_dssp             TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEE-EEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             cccceeeEECCCCCEEEEeccccccccceeEeeec-CCcEEEEeeccCCcc-eeeecCCCceEEEeecccceeeEeeecc
Confidence            35688999999999999871       34577774 677777666677899 999999998779999764 56666532 


Q ss_pred             --C-----cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc
Q 030700           80 --G-----VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY  152 (173)
Q Consensus        80 --g-----~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  152 (173)
                        +     ...+... .+ ....|+++++|++|++|++...                 .++|.+|||++..+..+.-...
T Consensus       180 ~~~~~~~~~~~~~~~-~~-~~g~pdG~~vD~~GnlWva~~~-----------------~g~V~~~dp~G~~~~~i~lP~~  240 (295)
T d2ghsa1         180 RTGLPTGKAEVFIDS-TG-IKGGMDGSVCDAEGHIWNARWG-----------------EGAVDRYDTDGNHIARYEVPGK  240 (295)
T ss_dssp             TTCCBSSCCEEEEEC-TT-SSSEEEEEEECTTSCEEEEEET-----------------TTEEEEECTTCCEEEEEECSCS
T ss_pred             cccccccceEEEecc-Cc-ccccccceEEcCCCCEEeeeeC-----------------CCceEEecCCCcEeeEecCCCC
Confidence              1     2223221 11 1247999999999999999632                 3689999998666666655567


Q ss_pred             CcceEEEc-cCCCEEEEEec
Q 030700          153 FANGVALS-EDERFLVVCES  171 (173)
Q Consensus       153 ~p~gi~~~-~dg~~lyv~~~  171 (173)
                      .|..+||. +|.++||||..
T Consensus       241 ~~T~~~FGG~d~~~LyvTta  260 (295)
T d2ghsa1         241 QTTCPAFIGPDASRLLVTSA  260 (295)
T ss_dssp             BEEEEEEESTTSCEEEEEEB
T ss_pred             ceEEEEEeCCCCCEEEEEEC
Confidence            88999995 79999999853

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=6.5e-14  Score=101.55  Aligned_cols=145  Identities=16%  Similarity=0.191  Sum_probs=106.8

Q ss_pred             ecCCccCCcceEEEcC-CCCEEEEc-CCCeEEEEcCCCcEE--EeccccCccccceEEccCCcEEEEEeCCC--eEEEEc
Q 030700            4 LGEGIVNHPEDVSVDG-NGVLYTAT-GDGWIKRMHPNGTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVS   77 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~-~g~l~~~~-~~~~i~~~~~~g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~   77 (173)
                      +....+..|++||+|. .++||+++ ..++|.+.+.+|...  ........|. +|++++...++|+++.+.  .|.+.+
T Consensus        71 ~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~-~l~vd~~~g~ly~~~~~~~~~I~r~~  149 (266)
T d1ijqa1          71 VISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPR-AIVVDPVHGFMYWTDWGTPAKIKKGG  149 (266)
T ss_dssp             EECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEE-EEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred             EEeCCCCCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcc-eEEEEcccCeEEEeccCCCcceeEec
Confidence            3344478899999998 77999998 667899999888633  2334456899 999998655559998653  688888


Q ss_pred             cCC--cEEEEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc---c
Q 030700           78 EEG--VTVLVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG---L  151 (173)
Q Consensus        78 ~~g--~~~~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~---~  151 (173)
                      .+|  .+.+...    .+..|++|++|+. ++|||+|..                 .++|.+++.++...+.+...   +
T Consensus       150 ~dGs~~~~l~~~----~~~~p~gl~iD~~~~~lYw~d~~-----------------~~~I~~~~~dG~~~~~~~~~~~~~  208 (266)
T d1ijqa1         150 LNGVDIYSLVTE----NIQWPNGITLDLLSGRLYWVDSK-----------------LHSISSIDVNGGNRKTILEDEKRL  208 (266)
T ss_dssp             TTSCCEEEEECS----SCSCEEEEEEETTTTEEEEEETT-----------------TTEEEEEETTSCSCEEEEECTTTT
T ss_pred             cCCCceeccccc----ccceeeEEEeeccccEEEEecCC-----------------cCEEEEEECCCCCEEEEEeCCCcc
Confidence            888  4444321    2357999999985 569999754                 36899999986655555433   5


Q ss_pred             cCcceEEEccCCCEEEEEecC
Q 030700          152 YFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~~  172 (173)
                      ..|.+|++.  +..|||+|..
T Consensus       209 ~~p~~lav~--~~~ly~td~~  227 (266)
T d1ijqa1         209 AHPFSLAVF--EDKVFWTDII  227 (266)
T ss_dssp             SSEEEEEEE--TTEEEEEETT
T ss_pred             cccEEEEEE--CCEEEEEECC
Confidence            678888886  4579999854

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.53  E-value=2.4e-13  Score=99.88  Aligned_cols=140  Identities=16%  Similarity=0.145  Sum_probs=97.6

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCCcEEE-ec-----------cccCccccceEEccCCcEEEEEeCCC-eEE
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNGTWED-WH-----------QVGSQSLLGLTTTKENNVIIVCDSQQ-GLL   74 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g~~~~-~~-----------~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~   74 (173)
                      ...|.+++++++|++|+++ .++.+++++..+.... +.           .....++ |+.++.+ .+ |+++... .++
T Consensus       112 ~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n-gi~~~~~-~l-~~~~~~~~~i~  188 (302)
T d2p4oa1         112 AIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAAN-GLKRFGN-FL-YVSNTEKMLLL  188 (302)
T ss_dssp             CSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEE-EEEEETT-EE-EEEETTTTEEE
T ss_pred             ccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccc-cccccCC-ce-eeecCCCCeEE
Confidence            4668999999999999988 7789999987654322 21           1123467 8887643 44 8888764 577


Q ss_pred             EEccCC---cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec--
Q 030700           75 KVSEEG---VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD--  149 (173)
Q Consensus        75 ~~~~~g---~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--  149 (173)
                      +++.++   ........   ....|++|+++++|++|+++..                 .++|++++|+ ++...+..  
T Consensus       189 ~~~~~~~~~~~~~~~~~---~~~~pdgia~d~dG~l~va~~~-----------------~~~V~~i~p~-G~~~~~~~~~  247 (302)
T d2p4oa1         189 RIPVDSTDKPGEPEIFV---EQTNIDDFAFDVEGNLYGATHI-----------------YNSVVRIAPD-RSTTIIAQAE  247 (302)
T ss_dssp             EEEBCTTSCBCCCEEEE---ESCCCSSEEEBTTCCEEEECBT-----------------TCCEEEECTT-CCEEEEECGG
T ss_pred             ecccccccccccccccc---CCCCCcceEECCCCCEEEEEcC-----------------CCcEEEECCC-CCEEEEEecC
Confidence            777433   21111111   1257999999999999999632                 3689999998 55444443  


Q ss_pred             -cccCcceEEE---ccCCCEEEEEecC
Q 030700          150 -GLYFANGVAL---SEDERFLVVCESW  172 (173)
Q Consensus       150 -~~~~p~gi~~---~~dg~~lyv~~~~  172 (173)
                       ++..|+.++|   ++|+++|||+...
T Consensus       248 ~~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         248 QGVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             GTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CCCCCceEEEEcCCCCCCCEEEEECCC
Confidence             5788999999   6799999998653

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.39  E-value=1.7e-11  Score=94.87  Aligned_cols=169  Identities=15%  Similarity=0.221  Sum_probs=106.4

Q ss_pred             CceecCCccCCcceEEEcCCCCEEEEcC-CCeEEEEcC-CCcEEEecc---------ccCccccceEEccC---CcEEEE
Q 030700            1 MIKLGEGIVNHPEDVSVDGNGVLYTATG-DGWIKRMHP-NGTWEDWHQ---------VGSQSLLGLTTTKE---NNVIIV   66 (173)
Q Consensus         1 ~~~~~~~~~~~p~~l~~~~~g~l~~~~~-~~~i~~~~~-~g~~~~~~~---------~~~~p~~gl~~~~~---g~l~~v   66 (173)
                      +|.++++ |..|.+|++.|+|+|||+.. .|+|++++. ++....+..         ..+... ||+++|+   ...+|+
T Consensus        19 ~~~ia~~-L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLL-gia~~Pdf~~n~~iYv   96 (450)
T d1crua_          19 KKVILSN-LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLL-GFAFHPDFKNNPYIYI   96 (450)
T ss_dssp             EEEEECC-CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEE-EEEECTTTTTSCEEEE
T ss_pred             EEEEECC-CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCcee-eEEeCCCCccCCEEEE
Confidence            3677778 89999999999999999994 699999985 444433221         112345 8999974   234488


Q ss_pred             EeCC-----------Ce--EEEEc--cCC--c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccc--ee-
Q 030700           67 CDSQ-----------QG--LLKVS--EEG--V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEY--YL-  123 (173)
Q Consensus        67 ~~~~-----------~~--i~~~~--~~g--~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~--~~-  123 (173)
                      +-..           ..  +.+..  .+.  .   +.+.........+.-..|++++||.|||+-..........  .. 
T Consensus        97 syt~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~  176 (450)
T d1crua_          97 SGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPN  176 (450)
T ss_dssp             EEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECCTTTTSGGGTTSCC
T ss_pred             EEecCCCCCcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecCCCccccccccccc
Confidence            6320           11  22222  222  1   2222222233335667899999999999876532211000  00 


Q ss_pred             ---------e---ecccCCCceEEEEcCCCCe-----------eEEeeccccCcceEEEccCCCEEEEEecC
Q 030700          124 ---------D---LVSGEPHGVLLKYDPSTNQ-----------TSLVLDGLYFANGVALSEDERFLVVCESW  172 (173)
Q Consensus       124 ---------~---~~~~~~~~~v~~~d~~~~~-----------~~~~~~~~~~p~gi~~~~dg~~lyv~~~~  172 (173)
                               .   .-.....|+|+|+++++..           .+.++.++++|.|++|+|+|+ ||++|.+
T Consensus       177 ~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~a~G~RNp~g~~~~p~g~-l~~~e~G  247 (450)
T d1crua_         177 QAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIYTLGHRNPQGLAFTPNGK-LLQSEQG  247 (450)
T ss_dssp             CTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEEEBCCSEEEEEEECTTSC-EEEEEEC
T ss_pred             ccccCcccccccccccccccCceEEeeccccccccccccccccceEEEeccccccceeecccce-eeecccc
Confidence                     0   0011335899999987442           256888999999999999886 8999865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.32  E-value=1.9e-10  Score=82.36  Aligned_cols=143  Identities=17%  Similarity=0.201  Sum_probs=97.1

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCCcEEEE
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLV   85 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g~~~~~   85 (173)
                      ..|..++++|+|. ++++. .+..+..++. +++..........|. .++++++++.+|++........+. ....+...
T Consensus       116 ~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (301)
T d1l0qa2         116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPK-GIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             ccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCce-EEEeeccccceeeecccccccccccccceeeee
Confidence            5678899999885 44555 5556666664 444444445556788 999999998878887765555444 33322111


Q ss_pred             eccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCC
Q 030700           86 SQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER  164 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~  164 (173)
                      .....   ..|.+++++++|. +|++...               ...+.|+.+|..+++..........|.+++|+|||+
T Consensus       195 ~~~~~---~~~~~~~~~~~g~~~~v~~~~---------------~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~  256 (301)
T d1l0qa2         195 TVKVE---AAPSGIAVNPEGTKAYVTNVD---------------KYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGK  256 (301)
T ss_dssp             EEECS---SEEEEEEECTTSSEEEEEEEC---------------SSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSS
T ss_pred             ccccc---CCcceeecccccccccccccc---------------ceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCC
Confidence            11111   3678999999996 5665422               233689999998887655555567799999999999


Q ss_pred             EEEEEec
Q 030700          165 FLVVCES  171 (173)
Q Consensus       165 ~lyv~~~  171 (173)
                      +|||+..
T Consensus       257 ~l~va~~  263 (301)
T d1l0qa2         257 KVYVALS  263 (301)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9999865

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.23  E-value=9.2e-10  Score=78.62  Aligned_cols=139  Identities=14%  Similarity=0.167  Sum_probs=98.7

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEE-Ecc-CC-cEE
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK-VSE-EG-VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~-~~~-~g-~~~   83 (173)
                      ..|.+++++|+|+ ||++. .++.|..||. +++..........|. +++++++++.++++......+. .+. ++ ...
T Consensus        32 ~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (301)
T d1l0qa2          32 SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQ-GVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG  110 (301)
T ss_dssp             SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEE-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccccc-ccccccccccccccccccceeeecccccceeee
Confidence            4699999999985 78777 6788999995 455544445566789 9999999988677766654444 443 44 222


Q ss_pred             EEeccCCccccCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      .....     ..+..+.++|+|.. +++..                 .+..+..++..++...........|..++++|+
T Consensus       111 ~~~~~-----~~~~~~~~~~dg~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  168 (301)
T d1l0qa2         111 TVKTG-----KSPLGLALSPDGKKLYVTNN-----------------GDKTVSVINTVTKAVINTVSVGRSPKGIAVTPD  168 (301)
T ss_dssp             EEECS-----SSEEEEEECTTSSEEEEEET-----------------TTTEEEEEETTTTEEEEEEECCSSEEEEEECTT
T ss_pred             ecccc-----ccceEEEeecCCCeeeeeec-----------------cccceeeeeccccceeeecccCCCceEEEeecc
Confidence            22221     35788999999974 44432                 235677788877776666666778899999999


Q ss_pred             CCEEEEEec
Q 030700          163 ERFLVVCES  171 (173)
Q Consensus       163 g~~lyv~~~  171 (173)
                      ++.+|++..
T Consensus       169 ~~~~~~~~~  177 (301)
T d1l0qa2         169 GTKVYVANF  177 (301)
T ss_dssp             SSEEEEEET
T ss_pred             ccceeeecc
Confidence            999999864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.23  E-value=8.4e-10  Score=82.79  Aligned_cols=150  Identities=12%  Similarity=0.077  Sum_probs=91.4

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEc--CCCcEEEe-----ccccCccccceEEccCCcEEEEEeCCC-eEEEEc--
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGTWEDW-----HQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLKVS--   77 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~--~~g~~~~~-----~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~~~--   77 (173)
                      .+|.+++++|+|+ +|+++ ...+|+.++  .+|.+...     ...+..|. +++|+++|+++|+++... .|..++  
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr-~i~f~pdg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPR-WVAMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEE-EEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceE-EEEECCCCceEEEeccCCCEEEEEEec
Confidence            4678999999985 88888 556777664  45654322     23356899 999999999989988664 454444  


Q ss_pred             cCC-c--EEEEec--c----------CCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           78 EEG-V--TVLVSQ--F----------NGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        78 ~~g-~--~~~~~~--~----------~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                      ... .  ......  .          .......+..++++|||+ +|+++.......          ...-..++++.. 
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~----------~~~i~~~~~~~~-  292 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFEL----------QGYIAGFKLRDC-  292 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTS----------CCEEEEEEECTT-
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCcc----------ceEEEEEEecCC-
Confidence            222 1  111111  0          011123567899999997 788753311110          011234555554 


Q ss_pred             CeeEEe------eccccCcceEEEcc-CCCEEEEEec
Q 030700          142 NQTSLV------LDGLYFANGVALSE-DERFLVVCES  171 (173)
Q Consensus       142 ~~~~~~------~~~~~~p~gi~~~~-dg~~lyv~~~  171 (173)
                      +.+...      ......|++|+++| +|++|||++.
T Consensus       293 g~~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~  329 (365)
T d1jofa_         293 GSIEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDD  329 (365)
T ss_dssp             SCEEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECS
T ss_pred             CceeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeC
Confidence            322211      12357899999998 8999999974

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.14  E-value=1.7e-09  Score=78.21  Aligned_cols=141  Identities=10%  Similarity=0.037  Sum_probs=92.7

Q ss_pred             EEEEcCCCeEEEEcCC-CcEEEe---ccccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC--cEEEEeccCCcccc
Q 030700           23 LYTATGDGWIKRMHPN-GTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG--VTVLVSQFNGSQLR   94 (173)
Q Consensus        23 l~~~~~~~~i~~~~~~-g~~~~~---~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g--~~~~~~~~~~~~~~   94 (173)
                      ++++..+++|..||.. ++....   ......|. +++++|||+++|++... +.|..+|. ++  ...+..........
T Consensus         4 ~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~-~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~   82 (337)
T d1pbyb_           4 ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPM-VPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVK   82 (337)
T ss_dssp             EEEEETTTEEEEEETTTTEEEEEEECTTCTTCCC-CEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEE
T ss_pred             EEEEcCCCEEEEEECCCCeEEEEEECCCCCCCcc-EEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccc
Confidence            4444577899999954 454432   23355789 99999999987888755 45666774 55  33332222222235


Q ss_pred             CCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           95 FANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        95 ~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .+.+++++|||+ +|++......      ...........+..+|..+++..........|.+++|+|||+++|++.
T Consensus        83 ~~~~v~~s~dg~~l~~~~~~~~~------~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~  153 (337)
T d1pbyb_          83 SLFGAALSPDGKTLAIYESPVRL------ELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLG  153 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEE------CSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEES
T ss_pred             ceeeEEEcCCCcEEEEeecCCcc------eeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEc
Confidence            788999999996 6666432100      001111234578889998888766666677899999999999999864

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.12  E-value=1.1e-09  Score=82.14  Aligned_cols=144  Identities=17%  Similarity=0.155  Sum_probs=85.4

Q ss_pred             CCcceEEEcCCC-CEEEEc---CCCeEEEEc--C------------CCcEEEe-----ccccCccccceEEccCCcEEEE
Q 030700           10 NHPEDVSVDGNG-VLYTAT---GDGWIKRMH--P------------NGTWEDW-----HQVGSQSLLGLTTTKENNVIIV   66 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~---~~~~i~~~~--~------------~g~~~~~-----~~~~~~p~~gl~~~~~g~l~~v   66 (173)
                      ..|..+++++++ .+|+..   ..+.++.+.  .            .++....     .+....++ +++++|+|+++|+
T Consensus        83 ~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h-~v~~sPdG~~l~v  161 (365)
T d1jofa_          83 GHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIH-GMVFDPTETYLYS  161 (365)
T ss_dssp             SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEE-EEEECTTSSEEEE
T ss_pred             CCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCcceeEeeeecceecCcccCcccCCCCcce-EEEECCCCCEEEE
Confidence            468889999987 466544   234454432  2            2222111     12334689 9999999998899


Q ss_pred             EeCCC-eEEEEc--cCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCC
Q 030700           67 CDSQQ-GLLKVS--EEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST  141 (173)
Q Consensus        67 ~~~~~-~i~~~~--~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~  141 (173)
                      ++.+. .+..++  .+| ...........+...|.+++++|||+ +|+++..                 +++|..|+.+.
T Consensus       162 ~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~-----------------~~~V~v~~~~~  224 (365)
T d1jofa_         162 ADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEA-----------------GNRICEYVIDP  224 (365)
T ss_dssp             EETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETT-----------------TTEEEEEEECT
T ss_pred             eeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccC-----------------CCEEEEEEecC
Confidence            98764 555544  455 43333222222336899999999997 6777532                 24555444332


Q ss_pred             C--eeE-Eee-----------------ccccCcceEEEccCCCEEEEEec
Q 030700          142 N--QTS-LVL-----------------DGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       142 ~--~~~-~~~-----------------~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      +  ... ...                 .....+..|+++|||++||+++.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr  274 (365)
T d1jofa_         225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSR  274 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEE
T ss_pred             CCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcc
Confidence            2  111 110                 01223567999999999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.05  E-value=5.1e-09  Score=75.80  Aligned_cols=130  Identities=14%  Similarity=0.141  Sum_probs=83.0

Q ss_pred             CEEEEc-CCCeEEEEcC--CCcEE--EeccccCccccceEEccCCcEEEEEeCCC-eEEE--EccCC-cEEEEeccCCcc
Q 030700           22 VLYTAT-GDGWIKRMHP--NGTWE--DWHQVGSQSLLGLTTTKENNVIIVCDSQQ-GLLK--VSEEG-VTVLVSQFNGSQ   92 (173)
Q Consensus        22 ~l~~~~-~~~~i~~~~~--~g~~~--~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~i~~--~~~~g-~~~~~~~~~~~~   92 (173)
                      .+||+. .++.|+.|+.  ++.+.  ...+..+.+. +|+|+|||+.||++.... .+..  ++.++ ...+.....  .
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~-~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~--~   81 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQ-PMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESA--L   81 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCC-CEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEE--C
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEe-EEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecc--c
Confidence            578877 6777877773  45443  3335667899 999999999989988654 3433  34433 322222111  1


Q ss_pred             ccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE---eeccccCcceEEEccCCCEEEE
Q 030700           93 LRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL---VLDGLYFANGVALSEDERFLVV  168 (173)
Q Consensus        93 ~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~---~~~~~~~p~gi~~~~dg~~lyv  168 (173)
                      ...|.+++++|||+ +|+++..                 ++.+..++.+......   .......|.+++++||++++++
T Consensus        82 ~~~p~~l~~spDg~~l~v~~~~-----------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~  144 (333)
T d1ri6a_          82 PGSLTHISTDHQGQFVFVGSYN-----------------AGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWV  144 (333)
T ss_dssp             SSCCSEEEECTTSSEEEEEETT-----------------TTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEE
T ss_pred             CCCceEEEEcCCCCEEeecccC-----------------CCceeeeccccccceecccccCCCccceEEEeeecceeeec
Confidence            14688999999997 6666432                 2355544443333222   2334567889999999999998


Q ss_pred             Eec
Q 030700          169 CES  171 (173)
Q Consensus       169 ~~~  171 (173)
                      ++.
T Consensus       145 ~~~  147 (333)
T d1ri6a_         145 PAL  147 (333)
T ss_dssp             EEG
T ss_pred             ccc
Confidence            764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.04  E-value=9.4e-09  Score=78.51  Aligned_cols=149  Identities=12%  Similarity=0.113  Sum_probs=93.3

Q ss_pred             eecCCccCCcceEEEcCCCC-EEEEcCCCeEEEEcC-CCc--EEEeccccCccccceEE----ccCCcEEEEEeCCC-eE
Q 030700            3 KLGEGIVNHPEDVSVDGNGV-LYTATGDGWIKRMHP-NGT--WEDWHQVGSQSLLGLTT----TKENNVIIVCDSQQ-GL   73 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g~-l~~~~~~~~i~~~~~-~g~--~~~~~~~~~~p~~gl~~----~~~g~l~~v~~~~~-~i   73 (173)
                      ++..+  ..|.+++++|||+ +|++..++.+..||. +++  ...-......|. ++++    ++||+.||++.... .+
T Consensus        57 ~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~-~~~~s~~~SpDG~~l~vs~~~~~~v  133 (432)
T d1qksa2          57 VLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR-SIETSKMEGWEDKYAIAGAYWPPQY  133 (432)
T ss_dssp             EEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEETTEE
T ss_pred             EEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCC-CeEEecccCCCCCEEEEEcCCCCeE
Confidence            34444  4699999999995 777778899999985 333  222223344555 6655    46999878877654 45


Q ss_pred             EEEcc-CC--cEEEEec---cC---CccccCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           74 LKVSE-EG--VTVLVSQ---FN---GSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        74 ~~~~~-~g--~~~~~~~---~~---~~~~~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      ..++. ++  ...+...   ..   -.+...+..+.++++|.. +++.                 ...+.++.++..+.+
T Consensus       134 ~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~-----------------~~~~~i~~~d~~~~~  196 (432)
T d1qksa2         134 VIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----------------KETGKILLVDYTDLN  196 (432)
T ss_dssp             EEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----------------TTTTEEEEEETTCSS
T ss_pred             EEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEE-----------------ccCCeEEEEEccCCC
Confidence            55664 44  3332211   00   011234556788888864 4442                 234788889877654


Q ss_pred             eEEee--ccccCcceEEEccCCCEEEEEec
Q 030700          144 TSLVL--DGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       144 ~~~~~--~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...+.  .....|.+++|+|||+++|++..
T Consensus       197 ~~~~~~i~~g~~~~~~~~spdg~~~~va~~  226 (432)
T d1qksa2         197 NLKTTEISAERFLHDGGLDGSHRYFITAAN  226 (432)
T ss_dssp             EEEEEEEECCSSEEEEEECTTSCEEEEEEG
T ss_pred             cceEEEEcccCccccceECCCCCEEEEecc
Confidence            33332  23467899999999999999864

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.04  E-value=6.8e-09  Score=75.09  Aligned_cols=142  Identities=11%  Similarity=0.114  Sum_probs=87.5

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEc--CCCc-EEEe--ccccCccccceEEccCCcEEEEEeCCCe-EEEEcc-CC
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMH--PNGT-WEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQG-LLKVSE-EG   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~--~~g~-~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~~-i~~~~~-~g   80 (173)
                      ..|.+|+++|+|+ ||++. .++.|..|+  ..+. ....  ......|. ++++++||+.||+++.... +..+.. +.
T Consensus        37 ~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~-~l~~spDg~~l~v~~~~~~~v~~~~~~~~  115 (333)
T d1ri6a_          37 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLT-HISTDHQGQFVFVGSYNAGNVSVTRLEDG  115 (333)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCS-EEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCce-EEEEcCCCCEEeecccCCCceeeeccccc
Confidence            5689999999985 88877 567777665  3332 2222  23355789 9999999998898876554 443333 33


Q ss_pred             -cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe--eEE-----eeccc
Q 030700           81 -VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ--TSL-----VLDGL  151 (173)
Q Consensus        81 -~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~--~~~-----~~~~~  151 (173)
                       ..........  ...++++.++++|+ +++++..                 ...+..++..+..  ...     .....
T Consensus       116 ~~~~~~~~~~~--~~~~~~v~~s~d~~~~~~~~~~-----------------~~~i~~~~~~~~~~~~~~~~~~~~~~~g  176 (333)
T d1ri6a_         116 LPVGVVDVVEG--LDGCHSANISPDNRTLWVPALK-----------------QDRICLFTVSDDGHLVAQDPAEVTTVEG  176 (333)
T ss_dssp             EEEEEEEEECC--CTTBCCCEECTTSSEEEEEEGG-----------------GTEEEEEEECTTSCEEEEEEEEEECSTT
T ss_pred             cceecccccCC--CccceEEEeeecceeeeccccc-----------------cceeeEEEeccCCcceeeeceeeeeecC
Confidence             2222222211  24688999999997 5555422                 1345555543221  111     11224


Q ss_pred             cCcceEEEccCCCEEEEEec
Q 030700          152 YFANGVALSEDERFLVVCES  171 (173)
Q Consensus       152 ~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ..|..++|+++++.+|++..
T Consensus       177 ~~p~~i~~~~~~~~~~~~~~  196 (333)
T d1ri6a_         177 AGPRHMVFHPNEQYAYCVNE  196 (333)
T ss_dssp             CCEEEEEECTTSSEEEEEET
T ss_pred             CCccEEEEeccceeEEeecc
Confidence            66789999999999988753

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.03  E-value=4.8e-09  Score=76.52  Aligned_cols=131  Identities=10%  Similarity=0.040  Sum_probs=89.3

Q ss_pred             EEcC-CCCEEEEcCCCeEEEEcCCC-cEEEeccccCccccceEEccCCcEEEEEeCCC-e-EEEEcc-CC-cEEEEeccC
Q 030700           16 SVDG-NGVLYTATGDGWIKRMHPNG-TWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ-G-LLKVSE-EG-VTVLVSQFN   89 (173)
Q Consensus        16 ~~~~-~g~l~~~~~~~~i~~~~~~g-~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~-~-i~~~~~-~g-~~~~~~~~~   89 (173)
                      -|.| +|++++....+.|+.++.++ ....+ ....... .++|+|||+.|+++.... . +...+. .+ ...+.. ..
T Consensus         9 ~fSP~dG~~~a~~~~g~v~v~d~~~~~~~~~-~~~~~v~-~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~-~~   85 (360)
T d1k32a3           9 DFSPLDGDLIAFVSRGQAFIQDVSGTYVLKV-PEPLRIR-YVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEE-NL   85 (360)
T ss_dssp             EEEECGGGCEEEEETTEEEEECTTSSBEEEC-SCCSCEE-EEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCC-CC
T ss_pred             cccCCCCCEEEEEECCeEEEEECCCCcEEEc-cCCCCEE-EEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeC-CC
Confidence            4788 89888777778999999755 44444 4556677 999999998866654443 3 444444 34 333321 11


Q ss_pred             CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEE
Q 030700           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVV  168 (173)
Q Consensus        90 ~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv  168 (173)
                          .....++++|||+.+++..                 .++.++.++.++++....... ......++|+|||++|++
T Consensus        86 ----~~v~~~~~spdg~~l~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~  144 (360)
T d1k32a3          86 ----GNVFAMGVDRNGKFAVVAN-----------------DRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAY  144 (360)
T ss_dssp             ----CSEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEE
T ss_pred             ----ceEEeeeecccccccceec-----------------cccccccccccccceeeeeecccccccchhhccceeeeee
Confidence                3567899999998655532                 236888899888776555543 455678999999998876


Q ss_pred             Ee
Q 030700          169 CE  170 (173)
Q Consensus       169 ~~  170 (173)
                      +.
T Consensus       145 ~~  146 (360)
T d1k32a3         145 GF  146 (360)
T ss_dssp             EE
T ss_pred             ec
Confidence            53

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.03  E-value=2.6e-08  Score=72.55  Aligned_cols=147  Identities=12%  Similarity=0.122  Sum_probs=96.7

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCC-eEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEE
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDG-WIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTV   83 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~-~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~   83 (173)
                      ....+++|+|+|+ |+++. .++ .|+.|+.+ +....+........ .++|+++|+.++.+.....++.++.+ + ...
T Consensus        43 ~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~~~~~~v~-~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  121 (360)
T d1k32a3          43 LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVF-AMGVDRNGKFAVVANDRFEIMTVDLETGKPTV  121 (360)
T ss_dssp             SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECCCCCCSEE-EEEECTTSSEEEEEETTSEEEEEETTTCCEEE
T ss_pred             CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEeeCCCceEE-eeeecccccccceeccccccccccccccceee
Confidence            4578899999995 55444 443 57788854 55666666666778 99999999996666655667777754 4 333


Q ss_pred             EEeccCCccccCCccEEEcCCCcEEE-EeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccC
Q 030700           84 LVSQFNGSQLRFANDVIEASDGSLYF-TVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSED  162 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~dG~~~v-~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~d  162 (173)
                      ......    .....++++|||+.++ +......        .......+.+..++..+++...+.........++|+||
T Consensus       122 ~~~~~~----~~~~~~~~spdg~~la~~~~~~~~--------~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spd  189 (360)
T d1k32a3         122 IERSRE----AMITDFTISDNSRFIAYGFPLKHG--------ETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDAD  189 (360)
T ss_dssp             EEECSS----SCCCCEEECTTSCEEEEEEEECSS--------TTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTT
T ss_pred             eeeccc----ccccchhhccceeeeeeecccccc--------ceeeccccceeeeccccCceeeecccccccccccccCC
Confidence            332221    3567899999997544 3211110        01122345778889988877666665556678999999


Q ss_pred             CCEEEEE
Q 030700          163 ERFLVVC  169 (173)
Q Consensus       163 g~~lyv~  169 (173)
                      |++|++.
T Consensus       190 g~~l~~~  196 (360)
T d1k32a3         190 SKNLYYL  196 (360)
T ss_dssp             SCEEEEE
T ss_pred             CCEEEEE
Confidence            9988865

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.93  E-value=1.1e-08  Score=74.09  Aligned_cols=97  Identities=15%  Similarity=0.075  Sum_probs=69.9

Q ss_pred             ceEEccCCcEEEEEeCCCeEEEEcc-CC-c-EEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccC
Q 030700           54 GLTTTKENNVIIVCDSQQGLLKVSE-EG-V-TVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGE  129 (173)
Q Consensus        54 gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~-~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~  129 (173)
                      |+++++++++++++...+.|..+|. .+ . ..+ ....+   ..|.+++++|||+ +|++..                 
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~-~~~~~---~~p~~l~~spDG~~l~v~~~-----------------   59 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSC-VMPDK---FGPGTAMMAPDNRTAYVLNN-----------------   59 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEE-ECSSC---CSSCEEEECTTSSEEEEEET-----------------
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEE-EcCCC---CCcceEEECCCCCEEEEEEC-----------------
Confidence            6789999999677777777888885 45 2 222 22112   4689999999997 677753                 


Q ss_pred             CCceEEEEcCCCCeeEEeecc-------ccCcceEEEccCCCEEEEEec
Q 030700          130 PHGVLLKYDPSTNQTSLVLDG-------LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       130 ~~~~v~~~d~~~~~~~~~~~~-------~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .++.|..+|..+++.......       ...|.+++|+|||+++|++..
T Consensus        60 ~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~  108 (346)
T d1jmxb_          60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVN  108 (346)
T ss_dssp             TTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEE
T ss_pred             CCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEec
Confidence            237899999998865433321       246789999999999999863

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.86  E-value=8.8e-08  Score=73.22  Aligned_cols=158  Identities=11%  Similarity=0.089  Sum_probs=92.4

Q ss_pred             cCCcceEEEc--CCC-CEEEEc-CCCeEEEEcCC-CcEEEec--cccCccccceEEccCCcEEEEEeCCC-eE-------
Q 030700            9 VNHPEDVSVD--GNG-VLYTAT-GDGWIKRMHPN-GTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQQ-GL-------   73 (173)
Q Consensus         9 ~~~p~~l~~~--~~g-~l~~~~-~~~~i~~~~~~-g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~~-~i-------   73 (173)
                      ...|.....+  ||| .||+.+ .+.+|.++|.+ ++.....  +.+..|+ |++++++|+.+||+.... .+       
T Consensus        69 ~hhP~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gph-gi~~spdg~t~YV~~~~~~~v~~~~dg~  147 (441)
T d1qnia2          69 CHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIH-GLRLQKVPKTNYVFCNAEFVIPQPNDGT  147 (441)
T ss_dssp             BCCCEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEE-EEEECCSSBCCEEEEEECSCEESSCSSS
T ss_pred             ccCCCcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCcc-ceEEeccCCEEEEEeccCCcccccCccc
Confidence            4456665554  577 699988 78899999964 4544432  4467899 999999999878765332 11       


Q ss_pred             -----------EEEccCCcEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcc---------cce--------e-
Q 030700           74 -----------LKVSEEGVTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------EYY--------L-  123 (173)
Q Consensus        74 -----------~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~---------~~~--------~-  123 (173)
                                 ..++....+......-+   ..|..++++|||+ +|+++........         .+.        . 
T Consensus       148 ~~~~~~~~~~~~~iD~~t~~v~~qI~v~---~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~  224 (441)
T d1qnia2         148 DFSLDNSYTMFTAIDAETMDVAWQVIVD---GNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA  224 (441)
T ss_dssp             CCCGGGEEEEEEEEETTTCSEEEEEEES---SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHH
T ss_pred             ccccccccceEEeecCccceeeEEEecC---CCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEE
Confidence                       11232221111111111   3689999999997 7877654321110         000        0 


Q ss_pred             -----eecccCCCceEEEEc-CCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          124 -----DLVSGEPHGVLLKYD-PSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       124 -----~~~~~~~~~~v~~~d-~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                           ..+.-..+ .+..++ ..+..+.........|.|++++|||+++|++..
T Consensus       225 ~~~dGk~~~v~~~-~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~  277 (441)
T d1qnia2         225 AVKAGNFKTIGDS-KVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGK  277 (441)
T ss_dssp             HHHTTCCBCCTTC-CCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECT
T ss_pred             EecCCCEEEeCCC-CcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCC
Confidence                 01111122 333344 333334444555678999999999999999864

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=3.3e-07  Score=66.82  Aligned_cols=138  Identities=11%  Similarity=0.090  Sum_probs=92.7

Q ss_pred             CCcceEEEcCCCCEE-EEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEe
Q 030700           10 NHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVS   86 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~   86 (173)
                      ....++++.+++..+ ++..++.+..|+. +++............ .+++++++++++++.....+..++... ......
T Consensus       184 ~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~~~i~-~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~  262 (337)
T d1gxra_         184 DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIF-SLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH  262 (337)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEE-EEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC
T ss_pred             cccccccccccccccccccccccccccccccceeecccccccceE-EEEEcccccccceecccccccccccccccccccc
Confidence            446788999987544 5558888999985 555444444455667 999999999856555544455555433 221111


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEE
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFL  166 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~l  166 (173)
                      ...    .....++++|+|+++++-.                 .++.|..+|..+++.............++|+|++++|
T Consensus       263 ~~~----~~i~~v~~s~~g~~l~s~s-----------------~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l  321 (337)
T d1gxra_         263 LHE----SCVLSLKFAYCGKWFVSTG-----------------KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYI  321 (337)
T ss_dssp             CCS----SCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEE
T ss_pred             ccc----cccceEEECCCCCEEEEEe-----------------CCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEE
Confidence            111    3467899999998777632                 3478888998877765555445667789999999988


Q ss_pred             EEE
Q 030700          167 VVC  169 (173)
Q Consensus       167 yv~  169 (173)
                      +.+
T Consensus       322 ~t~  324 (337)
T d1gxra_         322 VTG  324 (337)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            765

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=98.85  E-value=1.8e-08  Score=72.85  Aligned_cols=97  Identities=10%  Similarity=-0.009  Sum_probs=65.9

Q ss_pred             eEEEcCCCCEEE-EcCCCeEEEEcC-CCcEEEec--cccCccccceEEccCCcEEEEEeCC-CeEEEEcc-CC--cEEEE
Q 030700           14 DVSVDGNGVLYT-ATGDGWIKRMHP-NGTWEDWH--QVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKVSE-EG--VTVLV   85 (173)
Q Consensus        14 ~l~~~~~g~l~~-~~~~~~i~~~~~-~g~~~~~~--~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~~~-~g--~~~~~   85 (173)
                      |+++.++++.++ +..++.|..||. ++++....  +....|. +++++|||+.+|++... +.+..+|. .+  ...+.
T Consensus         1 g~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~-~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~   79 (346)
T d1jmxb_           1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPG-TAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHAN   79 (346)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSC-EEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             CccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcc-eEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeec
Confidence            578888886554 558889999996 45554422  3355799 99999999988898865 45777774 55  22222


Q ss_pred             ec-cCCccccCCccEEEcCCCc-EEEEe
Q 030700           86 SQ-FNGSQLRFANDVIEASDGS-LYFTV  111 (173)
Q Consensus        86 ~~-~~~~~~~~~~~l~~~~dG~-~~v~~  111 (173)
                      .. ........|.+++++|||+ +|++.
T Consensus        80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~  107 (346)
T d1jmxb_          80 LSSVPGEVGRSMYSFAISPDGKEVYATV  107 (346)
T ss_dssp             SCCSTTEEEECSSCEEECTTSSEEEEEE
T ss_pred             ccccccccCCceEEEEEecCCCEEEEEe
Confidence            11 1122234789999999996 77764

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.78  E-value=1.2e-07  Score=72.29  Aligned_cols=139  Identities=10%  Similarity=-0.048  Sum_probs=88.5

Q ss_pred             cceEEEcCC-CCE-EEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEE
Q 030700           12 PEDVSVDGN-GVL-YTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLV   85 (173)
Q Consensus        12 p~~l~~~~~-g~l-~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~   85 (173)
                      |.....+.+ .++ +++. .++.|..+|. ++++....+.+..|+ +++|+|||+++|++.....+..++. .+ .....
T Consensus        21 ~~~~~~~~~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~~~~-~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~   99 (432)
T d1qksa2          21 PTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVH-ISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA   99 (432)
T ss_dssp             CSSCCSCCCGGGEEEEEETTTTEEEEEETTTCCEEEEEECSSCEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred             CCceeecCCCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEE
Confidence            444444443 245 4666 7789999996 456665555566799 9999999999888876666666773 44 32222


Q ss_pred             eccCCccccCCccEEE----cCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc----------
Q 030700           86 SQFNGSQLRFANDVIE----ASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG----------  150 (173)
Q Consensus        86 ~~~~~~~~~~~~~l~~----~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~----------  150 (173)
                      ....+   ..+.++++    +|||+ +|++...                 ++.+..+|.+++++......          
T Consensus       100 ~i~~~---~~~~~~~~s~~~SpDG~~l~vs~~~-----------------~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~  159 (432)
T d1qksa2         100 EIKIG---SEARSIETSKMEGWEDKYAIAGAYW-----------------PPQYVIMDGETLEPKKIQSTRGMTYDEQEY  159 (432)
T ss_dssp             EEECC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------TTEEEEEETTTCCEEEEEECCEECTTTCCE
T ss_pred             EEecC---CCCCCeEEecccCCCCCEEEEEcCC-----------------CCeEEEEeCccccceeeeccCCccccceec
Confidence            22111   23455554    56897 6777532                 36888899888776544321          


Q ss_pred             --ccCcceEEEccCCCEEEEEec
Q 030700          151 --LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 --~~~p~gi~~~~dg~~lyv~~~  171 (173)
                        ...+.+++++|||+.++++-.
T Consensus       160 ~~~~~~~~v~~s~dg~~~~vs~~  182 (432)
T d1qksa2         160 HPEPRVAAILASHYRPEFIVNVK  182 (432)
T ss_dssp             ESCCCEEEEEECSSSSEEEEEET
T ss_pred             cCCCceeEEEECCCCCEEEEEEc
Confidence              122346888999998888743

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.65  E-value=1.1e-06  Score=63.76  Aligned_cols=141  Identities=11%  Similarity=-0.053  Sum_probs=82.8

Q ss_pred             cceE-EEcCCC-CEEEEc-----CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCC----------CeE
Q 030700           12 PEDV-SVDGNG-VLYTAT-----GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----------QGL   73 (173)
Q Consensus        12 p~~l-~~~~~g-~l~~~~-----~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----------~~i   73 (173)
                      |..+ +..|+| ++|+++     ....|+.+|. +|+.......+ ... +++|+|||+.+|+++..          ..+
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g-~~~-~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v   80 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGG-FLP-NPVVADDGSFIAHASTVFSRIARGERTDYV   80 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEEC-SSC-EEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECC-CCC-ceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence            4444 446787 688876     2346999996 45554433333 444 79999999987887632          235


Q ss_pred             EEEcc-CC--cEEEEeccC--CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEe
Q 030700           74 LKVSE-EG--VTVLVSQFN--GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLV  147 (173)
Q Consensus        74 ~~~~~-~g--~~~~~~~~~--~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~  147 (173)
                      ..+|. ++  ...+.....  ..-...|..++++++|+ +++++..                ....+..++..+++....
T Consensus        81 ~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~~~~  144 (355)
T d2bbkh_          81 EVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS----------------PAPAVGVVDLEGKAFKRM  144 (355)
T ss_dssp             EEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECS----------------SSCEEEEEETTTTEEEEE
T ss_pred             EEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCC----------------CCceeeeeecCCCcEeeE
Confidence            55564 45  233222111  11124688999999996 6776532                223556666665553322


Q ss_pred             ecc--------ccCcceEEEccCCCEEEEEe
Q 030700          148 LDG--------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       148 ~~~--------~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ...        ...+..+++++|++.+++..
T Consensus       145 ~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~  175 (355)
T d2bbkh_         145 LDVPDCYHIFPTAPDTFFMHCRDGSLAKVAF  175 (355)
T ss_dssp             EECCSEEEEEEEETTEEEEEETTSCEEEEEC
T ss_pred             EecCCcceEeecCCcceEEEcCCCCEEEEEe
Confidence            211        12234578899999888764

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.65  E-value=3e-06  Score=60.51  Aligned_cols=139  Identities=12%  Similarity=0.026  Sum_probs=85.9

Q ss_pred             ceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEEEeccC
Q 030700           13 EDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVLVSQFN   89 (173)
Q Consensus        13 ~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~~~~~~   89 (173)
                      ......+.+.++++. .++.|..||. +++.. .+........ .+++++++++++++.....+...+......+.....
T Consensus       188 ~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~-~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~  266 (340)
T d1tbga_         188 MSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDIN-AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSH  266 (340)
T ss_dssp             EEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             eeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeE-EEEECCCCCEEEEEeCCCeEEEEeeccccccccccc
Confidence            345555666666554 7788888885 45443 3333344566 999999999855554444444445433111111111


Q ss_pred             CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEccCCCEEEE
Q 030700           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALSEDERFLVV  168 (173)
Q Consensus        90 ~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~~dg~~lyv  168 (173)
                      .........++++|+|+++++-                 ..++.|..||..+++......+ ....+.|+|+||+++|+.
T Consensus       267 ~~~~~~i~~~~~s~~~~~l~~g-----------------~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s  329 (340)
T d1tbga_         267 DNIICGITSVSFSKSGRLLLAG-----------------YDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVAT  329 (340)
T ss_dssp             TTCCSCEEEEEECSSSCEEEEE-----------------ETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEE
T ss_pred             ccccCceEEEEECCCCCEEEEE-----------------ECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEE
Confidence            1112345779999999876652                 2347899999887776555544 445688999999997766


Q ss_pred             E
Q 030700          169 C  169 (173)
Q Consensus       169 ~  169 (173)
                      +
T Consensus       330 ~  330 (340)
T d1tbga_         330 G  330 (340)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.62  E-value=6.7e-07  Score=67.45  Aligned_cols=142  Identities=10%  Similarity=-0.020  Sum_probs=88.5

Q ss_pred             cCCcceEEEcCCC-C-EEEEc-CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cE
Q 030700            9 VNHPEDVSVDGNG-V-LYTAT-GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus         9 ~~~p~~l~~~~~g-~-l~~~~-~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      -..|..+.++.+. . ++|+. .++.|..||. +++.....+.+..|. +++|+|||+++|++.....+..++. .+ ..
T Consensus        18 ~~~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~~~-~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~   96 (426)
T d1hzua2          18 EDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVH-ISRMSASGRYLLVIGRDARIDMIDLWAKEPT   96 (426)
T ss_dssp             GGSCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSSEE-EEEECTTSCEEEEEETTSEEEEEETTSSSCE
T ss_pred             ccCCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCCee-EEEECCCCCEEEEEeCCCCEEEEEccCCcee
Confidence            3556666666653 3 45666 7899999995 566655445566799 9999999999888876656666664 44 33


Q ss_pred             EEEeccCCccccCCccE----EEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-------
Q 030700           83 VLVSQFNGSQLRFANDV----IEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-------  150 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l----~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-------  150 (173)
                      .......+   ..+.++    +++|||+ ++++...                 ++.+..+|..++.+......       
T Consensus        97 ~~~~i~~~---~~~~~~~~s~~~spDG~~l~v~~~~-----------------~~~v~i~d~~~~~~~~~~~~~~~~~~~  156 (426)
T d1hzua2          97 KVAEIKIG---IEARSVESSKFKGYEDRYTIAGAYW-----------------PPQFAIMDGETLEPKQIVSTRGMTVDT  156 (426)
T ss_dssp             EEEEEECC---SEEEEEEECCSTTCTTTEEEEEEEE-----------------SSEEEEEETTTCCEEEEEECCEECSSS
T ss_pred             EEEEEeCC---CCCcceEEeeeecCCCCEEEEeecC-----------------CCeEEEEcCCccceeEEeeccCCCccc
Confidence            33322111   233444    4457897 5666422                 25677778777665444321       


Q ss_pred             -----ccCcceEEEccCCCEEEEEec
Q 030700          151 -----LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 -----~~~p~gi~~~~dg~~lyv~~~  171 (173)
                           ...+..+++++|++.++++..
T Consensus       157 ~~~~~~~~~~~i~~s~d~~~~~~~~~  182 (426)
T d1hzua2         157 QTYHPEPRVAAIIASHEHPEFIVNVK  182 (426)
T ss_dssp             CCEESCCCEEEEEECSSSSEEEEEET
T ss_pred             eeecCCCceeEEEECCCCCEEEEecC
Confidence                 112235777888888887653

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.62  E-value=3.5e-07  Score=69.83  Aligned_cols=111  Identities=6%  Similarity=-0.046  Sum_probs=70.0

Q ss_pred             ccCCcEEEEEeCC-CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccc-eeeecccCCCc
Q 030700           58 TKENNVIIVCDSQ-QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEY-YLDLVSGEPHG  132 (173)
Q Consensus        58 ~~~g~l~~v~~~~-~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~-~~~~~~~~~~~  132 (173)
                      .+||+.|||++.. +++.+++. ++ .........+   ..|++++++|+|+ +||++.......-+. ...........
T Consensus        80 tpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g---~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~  156 (441)
T d1qnia2          80 RYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNV---QAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYT  156 (441)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTC---CCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEE
T ss_pred             cCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCC---CCccceEEeccCCEEEEEeccCCcccccCcccccccccccc
Confidence            4789998999876 46888885 55 4433333222   5799999999996 788764321100000 00001111223


Q ss_pred             eEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .+..+|+.+.++.........|.+++++|||+++|++..
T Consensus       157 ~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~  195 (441)
T d1qnia2         157 MFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCY  195 (441)
T ss_dssp             EEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEES
T ss_pred             eEEeecCccceeeEEEecCCCccceEECCCCCEEEEEec
Confidence            556789887765444433467899999999999999864

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.60  E-value=6.8e-07  Score=64.03  Aligned_cols=95  Identities=15%  Similarity=0.087  Sum_probs=61.3

Q ss_pred             CCcceEEEcCCCC-EEEEc-CCCeEEEEcC-CCcEEEecc------ccCccccceEEccCCcEEEEEeCCC---------
Q 030700           10 NHPEDVSVDGNGV-LYTAT-GDGWIKRMHP-NGTWEDWHQ------VGSQSLLGLTTTKENNVIIVCDSQQ---------   71 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~-~~~~i~~~~~-~g~~~~~~~------~~~~p~~gl~~~~~g~l~~v~~~~~---------   71 (173)
                      ..|.+++++|+|+ +|++. .++.|..||. +|+......      ....+. +++++++++.+|++....         
T Consensus        34 ~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~-~v~~s~dg~~l~~~~~~~~~~~~~~~~  112 (337)
T d1pbyb_          34 PTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLF-GAALSPDGKTLAIYESPVRLELTHFEV  112 (337)
T ss_dssp             TCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTT-CEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             CCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCccccccee-eEEEcCCCcEEEEeecCCcceeeeccc
Confidence            5688999999985 67776 6788999995 566543221      123578 999999999877775321         


Q ss_pred             ---eEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEE
Q 030700           72 ---GLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFT  110 (173)
Q Consensus        72 ---~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~  110 (173)
                         .+..++. .+ .......     ...++++++++||+ +|++
T Consensus       113 ~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~s~dg~~l~~~  152 (337)
T d1pbyb_         113 QPTRVALYDAETLSRRKAFEA-----PRQITMLAWARDGSKLYGL  152 (337)
T ss_dssp             CCCEEEEEETTTTEEEEEEEC-----CSSCCCEEECTTSSCEEEE
T ss_pred             cccceeeccccCCeEEEeccc-----cCCceEEEEcCCCCEEEEE
Confidence               2233332 23 1111111     13688999999997 5555

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=5.8e-06  Score=59.94  Aligned_cols=141  Identities=12%  Similarity=0.053  Sum_probs=87.4

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCC-c----EEEe--ccccCccccceEEccCCcEEEEEeCCCeEEEEccCC--
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNG-T----WEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG--   80 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g-~----~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g--   80 (173)
                      ....+++++|+|.+.++..++.|..||.+. .    ....  ........ .++|+++|++|+++.....+...+...  
T Consensus        52 ~~V~~v~fs~~g~~latg~dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~-~v~~s~dg~~l~s~~~dg~i~iwd~~~~~  130 (337)
T d1gxra_          52 EVVCAVTISNPTRHVYTGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIR-SCKLLPDGCTLIVGGEASTLSIWDLAAPT  130 (337)
T ss_dssp             SCCCEEEECSSSSEEEEECBSEEEEEETTSTTCCSCSEEEECSCTTSBEE-EEEECTTSSEEEEEESSSEEEEEECCCC-
T ss_pred             CcEEEEEECCCCCEEEEEECCEEEEEEccCCcccceeEEeeecCCCCcEE-EEEEcCCCCEEEEeecccccccccccccc
Confidence            345789999999877766678888888432 1    1111  12223456 899999999855555444455455332  


Q ss_pred             cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEE
Q 030700           81 VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVAL  159 (173)
Q Consensus        81 ~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~  159 (173)
                      ....... ... ......+.++|++.++++..                 .++.+..++..+++....... ......++|
T Consensus       131 ~~~~~~~-~~~-~~~v~~~~~~~~~~~l~s~~-----------------~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~  191 (337)
T d1gxra_         131 PRIKAEL-TSS-APACYALAISPDSKVCFSCC-----------------SDGNIAVWDLHNQTLVRQFQGHTDGASCIDI  191 (337)
T ss_dssp             -EEEEEE-ECS-SSCEEEEEECTTSSEEEEEE-----------------TTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccccccc-ccc-cccccccccccccccccccc-----------------ccccccccccccccccccccccccccccccc
Confidence            2221111 111 12446788999998766532                 235788888887776555544 344578999


Q ss_pred             ccCCCEEEEEe
Q 030700          160 SEDERFLVVCE  170 (173)
Q Consensus       160 ~~dg~~lyv~~  170 (173)
                      +++++.++++.
T Consensus       192 s~~~~~~~~~~  202 (337)
T d1gxra_         192 SNDGTKLWTGG  202 (337)
T ss_dssp             CTTSSEEEEEE
T ss_pred             ccccccccccc
Confidence            99998887764

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.55  E-value=3.9e-06  Score=61.32  Aligned_cols=139  Identities=6%  Similarity=-0.090  Sum_probs=82.4

Q ss_pred             cceEEEcCCC-CEEEEc-----CCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCC---------e-EE
Q 030700           12 PEDVSVDGNG-VLYTAT-----GDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQ---------G-LL   74 (173)
Q Consensus        12 p~~l~~~~~g-~l~~~~-----~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~---------~-i~   74 (173)
                      ...+++.|+| ++|++.     ..+.++.+|. +|+...... .+.+. +++|+|||+.+|++....         + +.
T Consensus        23 ~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~-~~~~~-~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~  100 (373)
T d2madh_          23 TNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVN-GGFLP-NPVAAHSGSEFALASTSFSRIAKGKRTDYVE  100 (373)
T ss_pred             ccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEe-CCCCc-cEEEcCCCCEEEEEeecCCcccccccceEEE
Confidence            4678889988 688775     2356899984 666554333 33455 799999999988876431         2 34


Q ss_pred             EEcc-CC-cEEEEeccCCc---cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           75 KVSE-EG-VTVLVSQFNGS---QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        75 ~~~~-~g-~~~~~~~~~~~---~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      .+|. ++ ...........   ....|..++++++|+ +++....                +.+.+..++..+.+.   .
T Consensus       101 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~----------------~~~~~~~~~~~~~~~---~  161 (373)
T d2madh_         101 VFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA----------------AGPAVGLVVQGGSSD---D  161 (373)
T ss_pred             EEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEc----------------CCCceEEeeccCCeE---E
Confidence            4443 34 21111111111   123578899999986 5555322                223455555554433   2


Q ss_pred             ccccCcceEEEccCCCEEEEEec
Q 030700          149 DGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       149 ~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .....|.+++++|+++.+|++.+
T Consensus       162 ~~~~~~~~~~~s~~g~~~~v~~~  184 (373)
T d2madh_         162 QLLSSPTCYHIHPGAPSTFYLLC  184 (373)
T ss_pred             EEeccceeEEEecCCCcEEEEEc
Confidence            22345778888888888877643

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.53  E-value=2.4e-06  Score=60.56  Aligned_cols=141  Identities=18%  Similarity=0.223  Sum_probs=87.2

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEEecc-c-cCccccceEEccCCcEEEEEeCCCeEEEEc
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWEDWHQ-V-GSQSLLGLTTTKENNVIIVCDSQQGLLKVS   77 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~~~~-~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~   77 (173)
                      .++..|=-....+|+++|+|.++++. .++.|..||. +++...... . ..... .++++++|++ +++.....+..++
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~-~v~~~~~g~~-~~~~~d~~v~~~~   82 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMIT-GIKTTSKGDL-FTVSWDDHLKVVP   82 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEE-EEEECTTSCE-EEEETTTEEEEEC
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEE-EEEeecccee-ecccceeeEEEec
Confidence            45566655667899999999766554 8899999985 556544332 2 33456 8999999998 7776666666666


Q ss_pred             cCC--c---EEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecccc
Q 030700           78 EEG--V---TVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLY  152 (173)
Q Consensus        78 ~~g--~---~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  152 (173)
                      ..+  .   .......    ...+..+++.++|.+.++..                  .+.+..++..  +...... ..
T Consensus        83 ~~~~~~~~~~~~~~~~----~~~~~~~~~s~~g~~~~~~~------------------~~~i~~~~~~--~~~~~~~-~~  137 (299)
T d1nr0a2          83 AGGSGVDSSKAVANKL----SSQPLGLAVSADGDIAVAAC------------------YKHIAIYSHG--KLTEVPI-SY  137 (299)
T ss_dssp             SSSSSSCTTSCCEEEC----SSCEEEEEECTTSSCEEEEE------------------SSEEEEEETT--EEEEEEC-SS
T ss_pred             cCCccccccccccccc----cccccccccccccccccccc------------------cccccccccc--ccccccc-cc
Confidence            332  1   1111111    13567889999998666532                  1356666643  2222222 22


Q ss_pred             CcceEEEccCCCEEEEE
Q 030700          153 FANGVALSEDERFLVVC  169 (173)
Q Consensus       153 ~p~gi~~~~dg~~lyv~  169 (173)
                      .+..++|+|+++.+++.
T Consensus       138 ~~~~~~~s~~~~~l~~g  154 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVG  154 (299)
T ss_dssp             CEEEEEECTTSCEEEEE
T ss_pred             ccccccccccccccccc
Confidence            34568888888877664

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.52  E-value=5.1e-06  Score=61.19  Aligned_cols=98  Identities=8%  Similarity=-0.051  Sum_probs=58.1

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEEE---eccccCccccceEEccCCcEEEEEeCCCeEEEE--ccCC-cE
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWED---WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV--SEEG-VT   82 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~~---~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~--~~~g-~~   82 (173)
                      ...+++|+|++.++++. .++.|..|+.+ +....   +........ .++|+|+++.++++.....+...  +... ..
T Consensus        53 ~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~  131 (371)
T d1k8kc_          53 QVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR-CVRWAPNEKKFAVGSGSRVISICYFEQENDWW  131 (371)
T ss_dssp             CEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEE-EEEECTTSSEEEEEETTSSEEEEEEETTTTEE
T ss_pred             CEEEEEECCCCCEEEEEECCCeEEEEeeccccccccccccccccccc-ccccccccccceeecccCcceeeeeecccccc
Confidence            45789999998766544 78889888854 33322   222234567 99999999985555444323322  2222 22


Q ss_pred             EEEeccCCccccCCccEEEcCCCcEEEE
Q 030700           83 VLVSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        83 ~~~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      ....... ........++++|+|.++++
T Consensus       132 ~~~~~~~-~~~~~v~~v~~~p~~~~l~s  158 (371)
T d1k8kc_         132 VCKHIKK-PIRSTVLSLDWHPNSVLLAA  158 (371)
T ss_dssp             EEEEECT-TCCSCEEEEEECTTSSEEEE
T ss_pred             ccccccc-ccccccccccccccccceec
Confidence            2222111 11134567899999987765

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=98.52  E-value=6.2e-06  Score=61.99  Aligned_cols=144  Identities=10%  Similarity=0.066  Sum_probs=81.6

Q ss_pred             CCcceEEEcCCCC-EEEEcCCCeEEEEcCC-CcEEEe--ccccCccccceEE----ccCCcEEEEEeCCCe-EEEEcc-C
Q 030700           10 NHPEDVSVDGNGV-LYTATGDGWIKRMHPN-GTWEDW--HQVGSQSLLGLTT----TKENNVIIVCDSQQG-LLKVSE-E   79 (173)
Q Consensus        10 ~~p~~l~~~~~g~-l~~~~~~~~i~~~~~~-g~~~~~--~~~~~~p~~gl~~----~~~g~l~~v~~~~~~-i~~~~~-~   79 (173)
                      ..|.+++++|||+ ||++..++.|..||.+ ++....  ......|. ++++    ++||+.++++....+ +..++. .
T Consensus        62 ~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~-~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~  140 (426)
T d1hzua2          62 YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEAR-SVESSKFKGYEDRYTIAGAYWPPQFAIMDGET  140 (426)
T ss_dssp             SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEE-EEEECCSTTCTTTEEEEEEEESSEEEEEETTT
T ss_pred             CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCc-ceEEeeeecCCCCEEEEeecCCCeEEEEcCCc
Confidence            4699999999995 6677788899999853 442221  22333444 5554    479998778765544 444453 3


Q ss_pred             C-cEEEEecc----CCc---cccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE--Eee
Q 030700           80 G-VTVLVSQF----NGS---QLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVL  148 (173)
Q Consensus        80 g-~~~~~~~~----~~~---~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~  148 (173)
                      + ........    ...   +...+..++.++++. ++++..                 ..+.+..++.......  ...
T Consensus       141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~-----------------~~~~i~~~~~~~~~~~~~~~~  203 (426)
T d1hzua2         141 LEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK-----------------ETGKVLLVNYKDIDNLTVTSI  203 (426)
T ss_dssp             CCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET-----------------TTTEEEEEECSSSSSCEEEEE
T ss_pred             cceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecC-----------------CCCeEEEEEeccccceeeEEe
Confidence            4 22222111    000   111234456666665 344432                 2245555544333211  122


Q ss_pred             ccccCcceEEEccCCCEEEEEec
Q 030700          149 DGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       149 ~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      .....|.+++++|+++++|++..
T Consensus       204 ~~~~~~~~~~~~~~g~~~~~a~~  226 (426)
T d1hzua2         204 GAAPFLADGGWDSSHRYFMTAAN  226 (426)
T ss_dssp             ECCSSEEEEEECTTSCEEEEEET
T ss_pred             ccCCccEeeeECCCCcEEEeeee
Confidence            33567889999999999999854

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.51  E-value=7.2e-06  Score=59.17  Aligned_cols=139  Identities=11%  Similarity=0.100  Sum_probs=87.6

Q ss_pred             cCCcceEEEcCCCCEEEEc-CCCeEEEEcCCC-c--EE-EeccccCccccceEEccCCcEEEEEeCC-CeEEEE-c-cCC
Q 030700            9 VNHPEDVSVDGNGVLYTAT-GDGWIKRMHPNG-T--WE-DWHQVGSQSLLGLTTTKENNVIIVCDSQ-QGLLKV-S-EEG   80 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~g-~--~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~i~~~-~-~~g   80 (173)
                      -....++++.|+|+++++. .++.|..|+... .  .. .+........ .++|++++++++++... ...+.+ + ..+
T Consensus        58 ~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~  136 (311)
T d1nr0a1          58 SHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVK-DISWDSESKRIAAVGEGRERFGHVFLFDTG  136 (311)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEE-EEEECTTSCEEEEEECCSSCSEEEEETTTC
T ss_pred             CCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCccc-cccccccccccccccccccccccccccccc
Confidence            3556889999999877554 889999998533 2  22 2222334566 99999999985555432 222332 3 333


Q ss_pred             --cEEEEeccCCccccCCccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcce
Q 030700           81 --VTVLVSQFNGSQLRFANDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANG  156 (173)
Q Consensus        81 --~~~~~~~~~~~~~~~~~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~g  156 (173)
                        ...+    .+. ......++++|+|.. +++-                 ..++.|..+|..+++....... -...+.
T Consensus       137 ~~~~~l----~~h-~~~v~~v~~~~~~~~~l~sg-----------------s~d~~i~i~d~~~~~~~~~~~~~~~~i~~  194 (311)
T d1nr0a1         137 TSNGNL----TGQ-ARAMNSVDFKPSRPFRIISG-----------------SDDNTVAIFEGPPFKFKSTFGEHTKFVHS  194 (311)
T ss_dssp             CBCBCC----CCC-SSCEEEEEECSSSSCEEEEE-----------------ETTSCEEEEETTTBEEEEEECCCSSCEEE
T ss_pred             cccccc----ccc-ccccccccccccceeeeccc-----------------ccccccccccccccccccccccccccccc
Confidence              2222    111 124577899999874 5542                 1346888899887776555544 344578


Q ss_pred             EEEccCCCEEEEEe
Q 030700          157 VALSEDERFLVVCE  170 (173)
Q Consensus       157 i~~~~dg~~lyv~~  170 (173)
                      ++++|+++.++.+.
T Consensus       195 v~~~p~~~~l~~~~  208 (311)
T d1nr0a1         195 VRYNPDGSLFASTG  208 (311)
T ss_dssp             EEECTTSSEEEEEE
T ss_pred             cccCcccccccccc
Confidence            99999999887654

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.48  E-value=3.1e-06  Score=61.14  Aligned_cols=139  Identities=11%  Similarity=-0.006  Sum_probs=80.6

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCC-CcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC--c-EEE
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN-GTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG--V-TVL   84 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g--~-~~~   84 (173)
                      .|..++++|+|..++...++.++.++.+ +.. ..+........ .++|+|+|++|..+.....+...+. .+  . ...
T Consensus        19 ~~~~~a~~~~g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~~v~-~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~   97 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQTT-VAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTT   97 (311)
T ss_dssp             CCCCCEECTTSSEEEEEETTEEEEEETTCSSCCEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEE
T ss_pred             CeEEEEEcCCCCEEEEEeCCEEEEEECCCCceeEEEcCCCCCEE-EEEEeCCCCeEeccccCceEeeeeeeccccccccc
Confidence            4557899998866544455678888753 333 33334445567 9999999999555544444444443 33  2 222


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDE  163 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg  163 (173)
                      .....    .....++++|+|.++++....               ....+..++.++++...... .....+.++|+|++
T Consensus        98 ~~~~~----~~v~~v~~s~d~~~l~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~  158 (311)
T d1nr0a1          98 IPVFS----GPVKDISWDSESKRIAAVGEG---------------RERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSR  158 (311)
T ss_dssp             EECSS----SCEEEEEECTTSCEEEEEECC---------------SSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSS
T ss_pred             ccccc----Ccccccccccccccccccccc---------------ccccccccccccccccccccccccccccccccccc
Confidence            22111    346789999999876653220               11233444544444322222 23445789999998


Q ss_pred             CEEEEE
Q 030700          164 RFLVVC  169 (173)
Q Consensus       164 ~~lyv~  169 (173)
                      ++++++
T Consensus       159 ~~~l~s  164 (311)
T d1nr0a1         159 PFRIIS  164 (311)
T ss_dssp             SCEEEE
T ss_pred             eeeecc
Confidence            876654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=4e-06  Score=61.76  Aligned_cols=140  Identities=9%  Similarity=0.020  Sum_probs=80.6

Q ss_pred             cceEEEcCCCCEEEE-cCCCeEEEEcCC-CcEEEe---ccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEE
Q 030700           12 PEDVSVDGNGVLYTA-TGDGWIKRMHPN-GTWEDW---HQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVL   84 (173)
Q Consensus        12 p~~l~~~~~g~l~~~-~~~~~i~~~~~~-g~~~~~---~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~   84 (173)
                      -.+++|+|+|.++++ ..++.|..|+.+ ++....   ..+.+... .|+|+|++++|+.+.....+...+. .+ ....
T Consensus        10 It~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~-~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_          10 ISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVT-GVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEE-EEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             eEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEE-EEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            479999999977754 477888888864 443322   22334556 9999999998554544333444443 34 3322


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE--Eeecc-ccCcceEEEcc
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS--LVLDG-LYFANGVALSE  161 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~--~~~~~-~~~p~gi~~~~  161 (173)
                      .... + ....+..++++|+|+.+++...               ...-+++.++.......  ..... -.....++|+|
T Consensus        89 ~~~~-~-~~~~v~~i~~~p~~~~l~~~s~---------------d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p  151 (371)
T d1k8kc_          89 LVIL-R-INRAARCVRWAPNEKKFAVGSG---------------SRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP  151 (371)
T ss_dssp             EECC-C-CSSCEEEEEECTTSSEEEEEET---------------TSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECT
T ss_pred             cccc-c-ccccccccccccccccceeecc---------------cCcceeeeeecccccccccccccccccccccccccc
Confidence            2211 1 1135678999999986555221               01125555555433221  11122 23346799999


Q ss_pred             CCCEEEEE
Q 030700          162 DERFLVVC  169 (173)
Q Consensus       162 dg~~lyv~  169 (173)
                      ++++|..+
T Consensus       152 ~~~~l~s~  159 (371)
T d1k8kc_         152 NSVLLAAG  159 (371)
T ss_dssp             TSSEEEEE
T ss_pred             cccceecc
Confidence            99877654

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=98.47  E-value=1.1e-06  Score=65.07  Aligned_cols=103  Identities=10%  Similarity=0.182  Sum_probs=71.7

Q ss_pred             eecCCccCCcceEEEcCCCCEEEEcC------------------CCeEEEEcCCCcEEEeccccCccccceEEccCCcEE
Q 030700            3 KLGEGIVNHPEDVSVDGNGVLYTATG------------------DGWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVI   64 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g~l~~~~~------------------~~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~   64 (173)
                      ++....+..|.+|++.++|.+|+++.                  .+.++++++ +......+....|+ ||++++|+++|
T Consensus       143 ~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~-~~~~~~~~~l~~pN-GI~~s~d~~~l  220 (340)
T d1v04a_         143 TIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSP-NDVRVVAEGFDFAN-GINISPDGKYV  220 (340)
T ss_dssp             EECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECS-SCEEEEEEEESSEE-EEEECTTSSEE
T ss_pred             ecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcC-CceEEEcCCCCccc-eeEECCCCCEE
Confidence            34455678899999999999999951                  244666654 33444456667899 99999999988


Q ss_pred             EEEeCCC-eEEEEc--cCC-cEEEEe-ccCCccccCCccEEEcC-CCcEEEEe
Q 030700           65 IVCDSQQ-GLLKVS--EEG-VTVLVS-QFNGSQLRFANDVIEAS-DGSLYFTV  111 (173)
Q Consensus        65 ~v~~~~~-~i~~~~--~~g-~~~~~~-~~~~~~~~~~~~l~~~~-dG~~~v~~  111 (173)
                      ||++... .|.+++  .++ .+.... ...    ..|+++.+|+ +|.+|++.
T Consensus       221 yVa~t~~~~i~~y~~~~~~~l~~~~~~~l~----~~pDNi~~d~~~g~lwva~  269 (340)
T d1v04a_         221 YIAELLAHKIHVYEKHANWTLTPLRVLSFD----TLVDNISVDPVTGDLWVGC  269 (340)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEECS----SEEEEEEECTTTCCEEEEE
T ss_pred             EEEeCCCCeEEEEEeCCCcccceEEEecCC----CCCCccEEecCCCEEEEEE
Confidence            9998764 455554  344 222211 122    4799999997 68899985

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.45  E-value=7.3e-06  Score=60.23  Aligned_cols=67  Identities=9%  Similarity=-0.073  Sum_probs=43.9

Q ss_pred             CccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCC-EEEEEec
Q 030700           96 ANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDER-FLVVCES  171 (173)
Q Consensus        96 ~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~-~lyv~~~  171 (173)
                      +..+++++++. +|++....         .........+|+.+|..+++..........+.+++|+|||+ .||++..
T Consensus       266 ~~~~a~~~~~~~~~v~~~~~---------~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~a~spDG~~~ly~s~~  334 (368)
T d1mdah_         266 FQMVAKLKNTDGIMILTVEH---------SRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSA  334 (368)
T ss_dssp             SSCEEEETTTTEEEEEEEEC---------SSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEET
T ss_pred             ceeEEEcCCCCEEEEEecCC---------CceeecCCceEEEEECCCCcEeEEecCCCceeEEEECCCCCEEEEEEeC
Confidence            45678888775 56653211         01112334689999999887554444456788999999997 5788754

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.44  E-value=5.4e-06  Score=58.66  Aligned_cols=137  Identities=19%  Similarity=0.172  Sum_probs=86.9

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcCCCcEE-----EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCCcEEE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHPNGTWE-----DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEGVTVL   84 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g~~~-----~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g~~~~   84 (173)
                      ....++++.|+|.++++..++.+..++..+...     ........+. .+++++++++ +++.....+...+.......
T Consensus        56 ~~v~~v~~~~~g~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~s~~g~~-~~~~~~~~i~~~~~~~~~~~  133 (299)
T d1nr0a2          56 TMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPL-GLAVSADGDI-AVAACYKHIAIYSHGKLTEV  133 (299)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEE-EEEECTTSSC-EEEEESSEEEEEETTEEEEE
T ss_pred             CcEEEEEeeccceeecccceeeEEEeccCCcccccccccccccccccc-cccccccccc-cccccccccccccccccccc
Confidence            345789999999999888888898887543211     1122345677 8999999998 44444444544443222222


Q ss_pred             EeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEccC
Q 030700           85 VSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSED  162 (173)
Q Consensus        85 ~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~d  162 (173)
                      ...      .....++++|++.++++-                 ..++.+..+|..+++...+.  ......+.++|+|+
T Consensus       134 ~~~------~~~~~~~~s~~~~~l~~g-----------------~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~  190 (299)
T d1nr0a2         134 PIS------YNSSCVALSNDKQFVAVG-----------------GQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNN  190 (299)
T ss_dssp             ECS------SCEEEEEECTTSCEEEEE-----------------ETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTT
T ss_pred             ccc------cccccccccccccccccc-----------------cccccccccccccccccccccccccccccccccccc
Confidence            111      234668899999866552                 13468888887766544332  22345678999999


Q ss_pred             CCEEEEEec
Q 030700          163 ERFLVVCES  171 (173)
Q Consensus       163 g~~lyv~~~  171 (173)
                      +++|+++..
T Consensus       191 ~~~l~~~~~  199 (299)
T d1nr0a2         191 GAFLVATDQ  199 (299)
T ss_dssp             SSEEEEEET
T ss_pred             ccccccccc
Confidence            998877643

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=98.43  E-value=1e-05  Score=61.84  Aligned_cols=59  Identities=14%  Similarity=0.264  Sum_probs=44.8

Q ss_pred             CCcceEEEcCCCCEEEEcC---------------------------------CCeEEEEcCCCcE------------EEe
Q 030700           10 NHPEDVSVDGNGVLYTATG---------------------------------DGWIKRMHPNGTW------------EDW   44 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~---------------------------------~~~i~~~~~~g~~------------~~~   44 (173)
                      ..-..|+++++|.||++..                                 .|+|+|++++|..            +.+
T Consensus       144 H~gg~l~fgpDG~LYvs~Gd~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~Gkilri~~dg~~~~dnP~~~~~~~ei~  223 (450)
T d1crua_         144 HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTPTQQELNGKDYHTYMGKVLRLNLDGSIPKDNPSFNGVVSHIY  223 (450)
T ss_dssp             CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCCCHHHHHTTCCTTCSSEEEEECTTSCCCTTCCEETTEECSEE
T ss_pred             ccccceeEcCCCCEEEEecCCCcccccccccccccccCcccccccccccccccCceEEeeccccccccccccccccceEE
Confidence            4456799999999998752                                 2789999887753            223


Q ss_pred             ccccCccccceEEccCCcEEEEEeCC
Q 030700           45 HQVGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        45 ~~~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ......|. +++++++|++ |+++.+
T Consensus       224 a~G~RNp~-g~~~~p~g~l-~~~e~G  247 (450)
T d1crua_         224 TLGHRNPQ-GLAFTPNGKL-LQSEQG  247 (450)
T ss_dssp             EBCCSEEE-EEEECTTSCE-EEEEEC
T ss_pred             Eecccccc-ceeeccccee-eecccc
Confidence            34445799 9999999998 998755

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=98.28  E-value=0.00011  Score=53.27  Aligned_cols=151  Identities=9%  Similarity=-0.003  Sum_probs=80.7

Q ss_pred             CCcceEEEcCCC-CEEEEc-CCCeEEEEcCCC-cEEEec-----cc--cCccccceEEccCCcEEEEEeCCCeEEEEccC
Q 030700           10 NHPEDVSVDGNG-VLYTAT-GDGWIKRMHPNG-TWEDWH-----QV--GSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE   79 (173)
Q Consensus        10 ~~p~~l~~~~~g-~l~~~~-~~~~i~~~~~~g-~~~~~~-----~~--~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~   79 (173)
                      ..|.++++.++| .+|++. .++.+..++... ......     ..  ...+. .+..+.++.+ ++......+..++..
T Consensus       165 ~~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~v~~~~~~  242 (373)
T d2madh_         165 SSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQ-PAQANKSGRI-VWPVYSGKILQADIS  242 (373)
T ss_pred             ccceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceee-eEEECCCceE-EEecCCceEEEEEcC
Confidence            457788888876 466555 678888887443 222111     11  11233 4455566555 333233345554432


Q ss_pred             -C-cEEEEec--cC------CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           80 -G-VTVLVSQ--FN------GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        80 -g-~~~~~~~--~~------~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                       + .......  ..      .........++++++|. +|+.....        ..+......+.+..+|..+++.....
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--------~~~~~~~~~~~v~~~d~~t~~~~~~~  314 (373)
T d2madh_         243 AAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQ--------SAWKLHAAAKEVTSVTGLVGQTSSQI  314 (373)
T ss_pred             CCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCC--------ceEEeecCCCeEEEEECCCCcEEEEe
Confidence             2 1111110  00      00012345578888875 45442210        11222334568999999888765555


Q ss_pred             ccccCcceEEEccCCCE-EEEEe
Q 030700          149 DGLYFANGVALSEDERF-LVVCE  170 (173)
Q Consensus       149 ~~~~~p~gi~~~~dg~~-lyv~~  170 (173)
                      .....|.+++|+|||+. ||++.
T Consensus       315 ~~~~~~~~~a~spDG~~~l~vt~  337 (373)
T d2madh_         315 SLGHDVDAISVAQDGGPDLYALS  337 (373)
T ss_pred             cCCCCeeEEEECCCCCEEEEEEe
Confidence            55677899999999986 46654

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.20  E-value=0.00011  Score=51.15  Aligned_cols=139  Identities=12%  Similarity=0.130  Sum_probs=85.5

Q ss_pred             CcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEe
Q 030700           11 HPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVS   86 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~   86 (173)
                      ...+|+++|++.++++. .++.|..|+. +++.. .+........ .+++++++.+++.+.....+...+... ..... 
T Consensus        19 ~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-   96 (317)
T d1vyhc1          19 PVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ-DISFDHSGKLLASCSADMTIKLWDFQGFECIRT-   96 (317)
T ss_dssp             CEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEE-EEEECTTSSEEEEEETTSCCCEEETTSSCEEEC-
T ss_pred             CeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEE-EEeeecccccccccccccccccccccccccccc-
Confidence            45789999999877655 7899999984 45543 3333344566 899999999855554444344444322 11111 


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-cccCcceEEEccCCCE
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-GLYFANGVALSEDERF  165 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~~~p~gi~~~~dg~~  165 (173)
                       ..+. ......+.+.+++..+++..                 .++.+..+|..+++...... .......++++++++.
T Consensus        97 -~~~~-~~~~~~~~~~~~~~~~~~~~-----------------~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (317)
T d1vyhc1          97 -MHGH-DHNVSSVSIMPNGDHIVSAS-----------------RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTL  157 (317)
T ss_dssp             -CCCC-SSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSE
T ss_pred             -cccc-cccceeeeccCCCceEEeec-----------------cCcceeEeecccceeeeEEccCCCcceeeecccCCCE
Confidence             1111 13456688888887666521                 34677778877665443333 3455677899999887


Q ss_pred             EEEEe
Q 030700          166 LVVCE  170 (173)
Q Consensus       166 lyv~~  170 (173)
                      ++.+.
T Consensus       158 l~~~~  162 (317)
T d1vyhc1         158 IASCS  162 (317)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            76543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.20  E-value=2.6e-05  Score=57.64  Aligned_cols=137  Identities=12%  Similarity=0.124  Sum_probs=82.8

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcCC-CcEEE-ec------cccCccccceEEccCCcEEEEEeCCC--eEEEEc--c
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHPN-GTWED-WH------QVGSQSLLGLTTTKENNVIIVCDSQQ--GLLKVS--E   78 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~~-g~~~~-~~------~~~~~p~~gl~~~~~g~l~~v~~~~~--~i~~~~--~   78 (173)
                      ...++++.|+|.|..+..++.|..||.. ++... +.      ....... .++|+|+|++|+.+....  +++++.  .
T Consensus       186 ~~~~v~~s~dg~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~-~l~~spdg~~l~sgs~D~t~~~i~lwd~~  264 (393)
T d1sq9a_         186 FATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIR-SVKFSPQGSLLAIAHDSNSFGCITLYETE  264 (393)
T ss_dssp             CCCEEEECTTSEEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEE-EEEECSSTTEEEEEEEETTEEEEEEEETT
T ss_pred             cEEEEEECCCCEEEEEeCCCcEEEEeecccccccccccccccccccceEE-EcccccccceeeeecCCCCcceeeecccc
Confidence            3567999999866666688999999854 44322 11      1223456 899999999955543222  345544  2


Q ss_pred             CC--cEEEEeccCC-c-------cccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           79 EG--VTVLVSQFNG-S-------QLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        79 ~g--~~~~~~~~~~-~-------~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      .|  ...+...... .       -......++++|||+++++..                 .++.|..+|.++++.....
T Consensus       265 ~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s-----------------~D~~v~vWd~~~g~~~~~l  327 (393)
T d1sq9a_         265 FGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAG-----------------WDGKLRFWDVKTKERITTL  327 (393)
T ss_dssp             TCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEE-----------------TTSEEEEEETTTTEEEEEE
T ss_pred             cceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEEC-----------------CCCEEEEEECCCCCEEEEE
Confidence            45  3333211000 0       012467799999999888732                 4579999999888765554


Q ss_pred             ccc-----cCcceEEEccCCCE
Q 030700          149 DGL-----YFANGVALSEDERF  165 (173)
Q Consensus       149 ~~~-----~~p~gi~~~~dg~~  165 (173)
                      .+.     .....++|+++++.
T Consensus       328 ~gH~~~v~~~~~~~~~~~~~~~  349 (393)
T d1sq9a_         328 NMHCDDIEIEEDILAVDEHGDS  349 (393)
T ss_dssp             ECCGGGCSSGGGCCCBCTTSCB
T ss_pred             CCcCCcccCCccEEEECCCCCE
Confidence            432     12235677777654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.15  E-value=3.5e-05  Score=56.44  Aligned_cols=135  Identities=5%  Similarity=-0.165  Sum_probs=78.5

Q ss_pred             EEcCCC-CEEEE--c---CCCeEEEEcCC-CcEEEeccccCccccceEEccCCcEEEEEeCC----------CeEEEEcc
Q 030700           16 SVDGNG-VLYTA--T---GDGWIKRMHPN-GTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQ----------QGLLKVSE   78 (173)
Q Consensus        16 ~~~~~g-~l~~~--~---~~~~i~~~~~~-g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~----------~~i~~~~~   78 (173)
                      +..+++ ..|++  .   ....|+.+|.+ ++....... +... ++++++||+.+|++...          ..|..+|.
T Consensus        26 a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~-~~~~-~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~  103 (368)
T d1mdah_          26 GPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLG-AFLS-LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDP  103 (368)
T ss_dssp             CCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE-CTTC-EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECT
T ss_pred             ccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeC-CCCC-cceECCCCCEEEEEcccCccccccccCCeEEEEEC
Confidence            344555 34443  2   23468888864 444433333 3345 78999999987887631          12666664


Q ss_pred             -CC-cEEEEeccCC---ccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccc-
Q 030700           79 -EG-VTVLVSQFNG---SQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGL-  151 (173)
Q Consensus        79 -~g-~~~~~~~~~~---~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~-  151 (173)
                       ++ ..........   .....|..++++|||+ +|+++..                 .+.+..+|+.++++....... 
T Consensus       104 ~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~-----------------~~~v~~~d~~~~~~~~~~~~~~  166 (368)
T d1mdah_         104 VTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFG-----------------SSAAAGLSVPGASDDQLTKSAS  166 (368)
T ss_dssp             TTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECS-----------------SSCEEEEEETTTEEEEEEECSS
T ss_pred             CCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCC-----------------CCeEEEEECCCCcEeEEeeccC
Confidence             44 2222221111   1234689999999996 8888532                 257888888877654433211 


Q ss_pred             -------cCcceEEEccCCCEEEEE
Q 030700          152 -------YFANGVALSEDERFLVVC  169 (173)
Q Consensus       152 -------~~p~gi~~~~dg~~lyv~  169 (173)
                             .....+++++||+.+++.
T Consensus       167 ~~~~~~~~~~~~v~~~~Dg~~~~~~  191 (368)
T d1mdah_         167 CFHIHPGAAATHYLGSCPASLAASD  191 (368)
T ss_dssp             CCCCEEEETTEEECCCCTTSCEEEE
T ss_pred             cceEccCCCceEEEEcCCCCEEEEE
Confidence                   112346778888877765

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.11  E-value=1.7e-05  Score=57.25  Aligned_cols=101  Identities=17%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             EEccCCcEEEEEeCC-----CeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeec
Q 030700           56 TTTKENNVIIVCDSQ-----QGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        56 ~~~~~g~l~~v~~~~-----~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~  126 (173)
                      +.+|||+.+|+++..     ..++.+|. .|  ...+..   +    ....++++|||+ +|+++....        ...
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~---g----~~~~~a~SpDg~~l~v~~~~~~--------~~~   72 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDG---G----FLPNPVVADDGSFIAHASTVFS--------RIA   72 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEE---C----SSCEEEECTTSSCEEEEEEEEE--------ETT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEEC---C----CCCceEEcCCCCEEEEEeCCCc--------ccc
Confidence            456899888888643     24777775 45  333321   1    233699999996 888753210        011


Q ss_pred             ccCCCceEEEEcCCCCeeEEeec--------cccCcceEEEccCCCEEEEEec
Q 030700          127 SGEPHGVLLKYDPSTNQTSLVLD--------GLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~~~~~--------~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ....++.|..||+.+++......        ....|++++|+||++++|+++.
T Consensus        73 ~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~  125 (355)
T d2bbkh_          73 RGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQF  125 (355)
T ss_dssp             EEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEEC
T ss_pred             ccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecC
Confidence            12235789999999887544322        1356789999999999999764

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=98.09  E-value=0.0001  Score=55.50  Aligned_cols=160  Identities=11%  Similarity=0.089  Sum_probs=89.8

Q ss_pred             CccCCcceEEEcC--CC-CEEEEc-CCCeEEEEcCCC-cEEEe--ccccCccccceEEccCCcEEEEEeCCC--------
Q 030700            7 GIVNHPEDVSVDG--NG-VLYTAT-GDGWIKRMHPNG-TWEDW--HQVGSQSLLGLTTTKENNVIIVCDSQQ--------   71 (173)
Q Consensus         7 ~~~~~p~~l~~~~--~g-~l~~~~-~~~~i~~~~~~g-~~~~~--~~~~~~p~~gl~~~~~g~l~~v~~~~~--------   71 (173)
                      |.+..|.--..+.  || .||+.+ .+.+|.++|.+. +..++  .+....++ |+...++++..||.+...        
T Consensus        83 GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~H-G~r~~~~p~T~YV~~~~e~~vP~pnd  161 (459)
T d1fwxa2          83 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIH-GLRPQKWPRSNYVFCNGEDETPLVND  161 (459)
T ss_dssp             CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEE-EEEECCSSBCSEEEEEECSCEESSCS
T ss_pred             CCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCc-eeecccCCCeEEEEccCccccccCCC
Confidence            4466774333333  67 588888 889999999765 33332  24566788 999887776667764221        


Q ss_pred             -----------eE-EEEccCC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcc---------cce------
Q 030700           72 -----------GL-LKVSEEG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPA---------EYY------  122 (173)
Q Consensus        72 -----------~i-~~~~~~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~---------~~~------  122 (173)
                                 ++ -.+|.+. .....-...    ..+.++.++++|+ +|+++.....+..         .+.      
T Consensus       162 g~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~----g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~  237 (459)
T d1fwxa2         162 GTNMEDVANYVNVFTAVDADKWEVAWQVLVS----GNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIA  237 (459)
T ss_dssp             SSSTTCGG-EEEEEEEEETTTTEEEEEEEES----SCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHH
T ss_pred             CccccchhhcceEEEEEecCCceEEEEeeeC----CChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechH
Confidence                       12 2344332 111111122    2578999999997 5666544322211         000      


Q ss_pred             --eeecccC---CCceEEEEcCCCC---eeEEeeccccCcceEEEccCCCEEEEEec
Q 030700          123 --LDLVSGE---PHGVLLKYDPSTN---QTSLVLDGLYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       123 --~~~~~~~---~~~~v~~~d~~~~---~~~~~~~~~~~p~gi~~~~dg~~lyv~~~  171 (173)
                        ...+...   .-+.+-.+|....   ...........|.|+.++|||+++||+.-
T Consensus       238 rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGK  294 (459)
T d1fwxa2         238 EIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGK  294 (459)
T ss_dssp             HHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECT
T ss_pred             HhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCC
Confidence              0000000   0123445565421   23333444677999999999999999864

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.07  E-value=0.00064  Score=47.83  Aligned_cols=66  Identities=8%  Similarity=-0.089  Sum_probs=44.3

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV   76 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~   76 (173)
                      ....+++|+|++.++++. .++.|..||. +++... +........ .+++++++++++.+.....+...
T Consensus        56 ~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~-~v~~~~~~~~l~~~~~d~~i~~~  124 (340)
T d1tbga_          56 AKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVM-TCAYAPSGNYVACGGLDNICSIY  124 (340)
T ss_dssp             SCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEE-EEEECTTSSEEEEEETTCCEEEE
T ss_pred             CCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEE-eeEeeccceeeeeecccceeecc
Confidence            446789999999766555 8899999985 455433 323344556 99999999985555444333333

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.05  E-value=0.00062  Score=49.20  Aligned_cols=137  Identities=11%  Similarity=0.043  Sum_probs=76.6

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEE-ecc------------------ccCccccceEEccCCcEEEEEeCC
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWED-WHQ------------------VGSQSLLGLTTTKENNVIIVCDSQ   70 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~-~~~------------------~~~~p~~gl~~~~~g~l~~v~~~~   70 (173)
                      ...+++|+|+|.++++..++.|..|+. +++... +..                  ...... .++|+++|++|+.+...
T Consensus        64 ~V~~l~fs~dg~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~-~l~~s~~~~~l~s~~~d  142 (388)
T d1erja_          64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIR-SVCFSPDGKFLATGAED  142 (388)
T ss_dssp             CCCEEEECTTSSEEEEECBSCEEEEETTTCCEEEEECC-----------------CCCCBEE-EEEECTTSSEEEEEETT
T ss_pred             cEEEEEECCCCCEEEEEeCCeEEEEEecccceEeeecccccccccccccccccccCCCCCEE-EEEECCCCCcceecccc
Confidence            356899999998887767788888884 454322 110                  111245 78999999995555444


Q ss_pred             CeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee
Q 030700           71 QGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL  148 (173)
Q Consensus        71 ~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~  148 (173)
                      ..+...+. .+ .........    .....+.+.+++..+++..                 .++.+..+|..+.......
T Consensus       143 g~v~i~~~~~~~~~~~~~~h~----~~v~~~~~~~~~~~~~~~~-----------------~~~~i~~~d~~~~~~~~~~  201 (388)
T d1erja_         143 RLIRIWDIENRKIVMILQGHE----QDIYSLDYFPSGDKLVSGS-----------------GDRTVRIWDLRTGQCSLTL  201 (388)
T ss_dssp             SCEEEEETTTTEEEEEECCCS----SCEEEEEECTTSSEEEEEE-----------------TTSEEEEEETTTTEEEEEE
T ss_pred             ccccccccccccccccccccc----ccccccccccccccccccc-----------------cceeeeeeecccccccccc
Confidence            33444443 34 222111111    2456778888886544421                 2357777787766544444


Q ss_pred             ccccCcceEEEcc-CCCEEEEE
Q 030700          149 DGLYFANGVALSE-DERFLVVC  169 (173)
Q Consensus       149 ~~~~~p~gi~~~~-dg~~lyv~  169 (173)
                      ........+++.+ +++.|+.+
T Consensus       202 ~~~~~~~~~~~~~~~~~~l~~~  223 (388)
T d1erja_         202 SIEDGVTTVAVSPGDGKYIAAG  223 (388)
T ss_dssp             ECSSCEEEEEECSTTCCEEEEE
T ss_pred             ccccccccccccCCCCCeEEEE
Confidence            3333334444443 55555443

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.96  E-value=0.00052  Score=47.49  Aligned_cols=138  Identities=12%  Similarity=0.165  Sum_probs=77.2

Q ss_pred             CCcceEEEcCCCCEEEEc-CCCeEEEEcCC-CcEE-EeccccCccccceEEc--------------------cCCcEEEE
Q 030700           10 NHPEDVSVDGNGVLYTAT-GDGWIKRMHPN-GTWE-DWHQVGSQSLLGLTTT--------------------KENNVIIV   66 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~-~~~~i~~~~~~-g~~~-~~~~~~~~p~~gl~~~--------------------~~g~l~~v   66 (173)
                      .....+++++++.++++. .++.|..++.. ++.. .+........ .+.++                    ..+.+++.
T Consensus       144 ~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         144 EWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE-CISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEE-EEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             CcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCce-EEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            456778899988776554 77888888743 3322 1211111112 22222                    33445333


Q ss_pred             EeCCCeEEEEcc-CC--cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCe
Q 030700           67 CDSQQGLLKVSE-EG--VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQ  143 (173)
Q Consensus        67 ~~~~~~i~~~~~-~g--~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~  143 (173)
                      +.....+...+. ++  ...+.. ..    .....++++|+|+++++-                 ..++.|..+|..+++
T Consensus       223 ~~~d~~i~~~~~~~~~~~~~~~~-~~----~~v~~~~~~~~~~~l~s~-----------------~~dg~i~iwd~~~~~  280 (317)
T d1vyhc1         223 GSRDKTIKMWDVSTGMCLMTLVG-HD----NWVRGVLFHSGGKFILSC-----------------ADDKTLRVWDYKNKR  280 (317)
T ss_dssp             EETTSEEEEEETTTTEEEEEEEC-CS----SCEEEEEECSSSSCEEEE-----------------ETTTEEEEECCTTSC
T ss_pred             ccCCCEEEEEECCCCcEEEEEeC-CC----CCEEEEEECCCCCEEEEE-----------------ECCCeEEEEECCCCc
Confidence            333333444443 44  222221 11    345779999999866652                 134789999988776


Q ss_pred             eEEeec-cccCcceEEEccCCCEEEEEe
Q 030700          144 TSLVLD-GLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       144 ~~~~~~-~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      +..... .....+.++|+|++++|+.+.
T Consensus       281 ~~~~~~~h~~~V~~~~~s~~~~~l~s~s  308 (317)
T d1vyhc1         281 CMKTLNAHEHFVTSLDFHKTAPYVVTGS  308 (317)
T ss_dssp             CCEEEECCSSCEEEEEECSSSSCEEEEE
T ss_pred             EEEEEcCCCCCEEEEEEcCCCCEEEEEe
Confidence            443333 345568899999999877653

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.85  E-value=0.0015  Score=47.00  Aligned_cols=137  Identities=13%  Similarity=0.045  Sum_probs=79.2

Q ss_pred             cceEEEcCCCCEEEE-cCCCeEEEEcC-CCcEEEec-cccCccccceEEccCCcEEEEEeCCCeEEEEccCC-cEEEEec
Q 030700           12 PEDVSVDGNGVLYTA-TGDGWIKRMHP-NGTWEDWH-QVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEEG-VTVLVSQ   87 (173)
Q Consensus        12 p~~l~~~~~g~l~~~-~~~~~i~~~~~-~g~~~~~~-~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~g-~~~~~~~   87 (173)
                      ..+++|.|+|.++++ ..++.|..++. .++..... ....... .+++++++..++.+.....+...+... .......
T Consensus       124 V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~  202 (388)
T d1erja_         124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIY-SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  202 (388)
T ss_dssp             EEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEE-EEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEECCCCCcceeccccccccccccccccccccccccccccc-ccccccccccccccccceeeeeeeccccccccccc
Confidence            457899999976654 48888988885 44433322 2334456 888999988856655444455555433 2221111


Q ss_pred             cCCccccCCccEEEcC-CCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc--------ccCcceEE
Q 030700           88 FNGSQLRFANDVIEAS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG--------LYFANGVA  158 (173)
Q Consensus        88 ~~~~~~~~~~~l~~~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~p~gi~  158 (173)
                      ..    .....+.+.+ +|.++++..                 .++.|..++..++........        ......++
T Consensus       203 ~~----~~~~~~~~~~~~~~~l~~~~-----------------~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~  261 (388)
T d1erja_         203 IE----DGVTTVAVSPGDGKYIAAGS-----------------LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV  261 (388)
T ss_dssp             CS----SCEEEEEECSTTCCEEEEEE-----------------TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred             cc----cccccccccCCCCCeEEEEc-----------------CCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence            11    1233444554 676665521                 336777778776543322211        22346799


Q ss_pred             EccCCCEEEEEe
Q 030700          159 LSEDERFLVVCE  170 (173)
Q Consensus       159 ~~~dg~~lyv~~  170 (173)
                      |+|+++.|+++.
T Consensus       262 ~s~~~~~l~s~~  273 (388)
T d1erja_         262 FTRDGQSVVSGS  273 (388)
T ss_dssp             ECTTSSEEEEEE
T ss_pred             ECCCCCEEEEEE
Confidence            999999887653

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.73  E-value=0.00035  Score=52.61  Aligned_cols=135  Identities=7%  Similarity=-0.040  Sum_probs=76.6

Q ss_pred             CCcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEecc------ccCccccceEEccCCcEEEEEeCC---------CeE
Q 030700           10 NHPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQ------VGSQSLLGLTTTKENNVIIVCDSQ---------QGL   73 (173)
Q Consensus        10 ~~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~------~~~~p~~gl~~~~~g~l~~v~~~~---------~~i   73 (173)
                      ..+..+.|.+++.++..+ ++.|+.++. +|+...+..      ...... ...|+|||+.|.++...         ..+
T Consensus        17 ~~~~~~~W~~d~~~~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~-~~~~SpDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          17 LKLYSLRWISDHEYLYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSIN-DYSISPDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCCCCCEECSSSEEEEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCC-EEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             ccccCCEeCCCCEEEEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccc-eeEECCCCCEEEEEECCcceeeeccCceE
Confidence            345567788888655444 567999995 454443322      123456 88999999875443211         123


Q ss_pred             EEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc
Q 030700           74 LKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG  150 (173)
Q Consensus        74 ~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~  150 (173)
                      +.++. .+ ...+.. ..    .......++|||+ +.+..                   ++.++.++..+++...+...
T Consensus        95 ~l~d~~~~~~~~l~~-~~----~~~~~~~~SPDG~~ia~~~-------------------~~~l~~~~~~~g~~~~~t~~  150 (470)
T d2bgra1          95 DIYDLNKRQLITEER-IP----NNTQWVTWSPVGHKLAYVW-------------------NNDIYVKIEPNLPSYRITWT  150 (470)
T ss_dssp             EEEETTTTEECCSSC-CC----TTEEEEEECSSTTCEEEEE-------------------TTEEEEESSTTSCCEECCSC
T ss_pred             EEEECCCCccccccc-CC----ccccccccccCcceeeEee-------------------cccceEEECCCCceeeeeec
Confidence            34443 33 222111 11    2345678999997 43331                   13567777666654433321


Q ss_pred             -------------------ccCcceEEEccCCCEEEEEe
Q 030700          151 -------------------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 -------------------~~~p~gi~~~~dg~~lyv~~  170 (173)
                                         .....++.|||||+.|....
T Consensus       151 ~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPDGk~ia~~~  189 (470)
T d2bgra1         151 GKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQ  189 (470)
T ss_dssp             CBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEE
T ss_pred             cCCCcccccccceeeeeeecCCccccEECCCCCccceeE
Confidence                               22346789999999887753

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.67  E-value=0.0019  Score=46.01  Aligned_cols=139  Identities=13%  Similarity=0.060  Sum_probs=76.3

Q ss_pred             cceEEEcCCCCEEEE-c--CCCeEEEEcC-CCcE-EEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-c-CC-cEE
Q 030700           12 PEDVSVDGNGVLYTA-T--GDGWIKRMHP-NGTW-EDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-E-EG-VTV   83 (173)
Q Consensus        12 p~~l~~~~~g~l~~~-~--~~~~i~~~~~-~g~~-~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~-~g-~~~   83 (173)
                      ..+++|.++|..++. .  .+..+..++. .++. ..+........ ++++++++..++++...++.+++. . .+ ...
T Consensus       118 v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~  196 (325)
T d1pgua1         118 ISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRIN-ACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA  196 (325)
T ss_dssp             EEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEE-EEEECSSSSCEEEEEETTTEEEEEETTTBEEEE
T ss_pred             EEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccc-cccccccccceEEEeecccccccccccccccce
Confidence            457899998865533 2  3445555553 3443 33333344556 899999876534444444444444 2 33 221


Q ss_pred             EEeccCCccccCCccEEEcCC-CcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-ccCcceEEEc-
Q 030700           84 LVSQFNGSQLRFANDVIEASD-GSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-LYFANGVALS-  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~l~~~~d-G~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~~~p~gi~~~-  160 (173)
                      -...... .......++++|+ +.++++..                 .++.|..||..+++......+ .....++.|+ 
T Consensus       197 ~~~~~~~-~~~~v~~v~~~pd~~~~l~s~~-----------------~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~  258 (325)
T d1pgua1         197 SDRTHHK-QGSFVRDVEFSPDSGEFVITVG-----------------SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFAL  258 (325)
T ss_dssp             EECSSSC-TTCCEEEEEECSTTCCEEEEEE-----------------TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEE
T ss_pred             ecccccC-CCCccEEeeeccccceeccccc-----------------cccceeeeeeccccccccccccccccccceeee
Confidence            1111111 1134577899997 46666532                 347888999887775444443 2223445554 


Q ss_pred             --cCCCEEEEE
Q 030700          161 --EDERFLVVC  169 (173)
Q Consensus       161 --~dg~~lyv~  169 (173)
                        +|+++|..+
T Consensus       259 ~~~dg~~l~s~  269 (325)
T d1pgua1         259 SWLDSQKFATV  269 (325)
T ss_dssp             EESSSSEEEEE
T ss_pred             eccCCCEEEEE
Confidence              677766554

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.0082  Score=41.29  Aligned_cols=132  Identities=14%  Similarity=0.099  Sum_probs=69.6

Q ss_pred             CcceEEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCCcEEEEecc
Q 030700           11 HPEDVSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEGVTVLVSQF   88 (173)
Q Consensus        11 ~p~~l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g~~~~~~~~   88 (173)
                      .|..+++.+++.+++......+..++. ++........  ... ..+++++++.++++....+.+++. .......... 
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~-  157 (287)
T d1pgua2          82 QPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL--NSP-GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDL-  157 (287)
T ss_dssp             CEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC--SSC-EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEEC-
T ss_pred             ceeeeeeccCCceEEEeecccceeeeccceeeeeeccc--cce-eeeeeccCcceeeeccccceeeeeeccccceeeee-
Confidence            466677777776666665566666653 4444332221  123 445666666645555444444443 3331111111 


Q ss_pred             CCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEee--ccccCcceEEEccCC
Q 030700           89 NGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVL--DGLYFANGVALSEDE  163 (173)
Q Consensus        89 ~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~--~~~~~p~gi~~~~dg  163 (173)
                      ..........++++|+|.++++-                 ..++.|..||..+++.....  ......+.++|+|++
T Consensus       158 ~~~~~~~v~~~~~s~~~~~l~~g-----------------~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~p~~  217 (287)
T d1pgua2         158 KTPLRAKPSYISISPSETYIAAG-----------------DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAE  217 (287)
T ss_dssp             SSCCSSCEEEEEECTTSSEEEEE-----------------ETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC
T ss_pred             eeccCCceeEEEeccCccccccc-----------------cccccccceeecccccccccccccccccceeeecccc
Confidence            11111346789999999865542                 13468888888766543221  112334667777654

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.38  E-value=0.00095  Score=50.16  Aligned_cols=109  Identities=6%  Similarity=-0.024  Sum_probs=67.5

Q ss_pred             cCCcEEEEEeCC-CeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcC-cccceeeec-ccCCCc
Q 030700           59 KENNVIIVCDSQ-QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFT-PAEYYLDLV-SGEPHG  132 (173)
Q Consensus        59 ~~g~l~~v~~~~-~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~-~~~~~~~~~-~~~~~~  132 (173)
                      .|||+||+.+.. .++.+++.+-  ...+......   ..++++...++++ .||.+...... +.+-...+- ...-.+
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~---~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~  173 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNA---KGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVN  173 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSC---CSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCC---CCCceeecccCCCeEEEEccCccccccCCCCccccchhhcce
Confidence            489998999876 4788888654  3334443222   4778899888774 67765432100 000000000 011124


Q ss_pred             eEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700          133 VLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       133 ~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .+..+|.++.++.....-...+.++++++||+++|++.
T Consensus       174 ~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~Ts  211 (459)
T d1fwxa2         174 VFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTS  211 (459)
T ss_dssp             EEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEE
T ss_pred             EEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEe
Confidence            56789999887654444455788999999999999975

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.35  E-value=0.0051  Score=42.76  Aligned_cols=132  Identities=14%  Similarity=0.076  Sum_probs=66.3

Q ss_pred             EEEcCCCCEE-EEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEccC-C-cEEEEeccC
Q 030700           15 VSVDGNGVLY-TATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSEE-G-VTVLVSQFN   89 (173)
Q Consensus        15 l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~~-g-~~~~~~~~~   89 (173)
                      ....+++..+ .+..++.|..|+. .++... +........ .+.+  ++++++.+.....+...+.. . .........
T Consensus       181 ~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~-~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTS-GMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             EEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEE-EEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             ccccCCCCEEEEEeCCCeEEEeecccceeeeEeccccccee-EEec--CCCEEEEEcCCCEEEEEecccccccccccccc
Confidence            3444456544 4447888888885 344332 222233334 5554  44563444433345444533 3 222221111


Q ss_pred             CccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-----c-ccCcceEEEccCC
Q 030700           90 GSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-----G-LYFANGVALSEDE  163 (173)
Q Consensus        90 ~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-----~-~~~p~gi~~~~dg  163 (173)
                      .   ....-..+..+++++++-                 ..+|.|..+|..+++......     + ....+.++|+|++
T Consensus       258 ~---~~~~~~~~~~~~~~~~s~-----------------s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~  317 (342)
T d2ovrb2         258 K---HQSAVTCLQFNKNFVITS-----------------SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTK  317 (342)
T ss_dssp             S---CSSCEEEEEECSSEEEEE-----------------ETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSE
T ss_pred             e---eeeceeecccCCCeeEEE-----------------cCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCC
Confidence            1   122233444556666652                 245789999998876532221     1 1234678999998


Q ss_pred             CEEEEE
Q 030700          164 RFLVVC  169 (173)
Q Consensus       164 ~~lyv~  169 (173)
                      ..|.+.
T Consensus       318 ~~la~g  323 (342)
T d2ovrb2         318 LVCAVG  323 (342)
T ss_dssp             EEEEEE
T ss_pred             CEEEEE
Confidence            655443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.22  E-value=0.013  Score=41.53  Aligned_cols=134  Identities=14%  Similarity=0.115  Sum_probs=74.3

Q ss_pred             CcceEEEcC--CCCEEEEc-CCCeEEEEcCC-Cc----EE-----EeccccCccccceEEccCCcEEEEEeCC-Ce-EEE
Q 030700           11 HPEDVSVDG--NGVLYTAT-GDGWIKRMHPN-GT----WE-----DWHQVGSQSLLGLTTTKENNVIIVCDSQ-QG-LLK   75 (173)
Q Consensus        11 ~p~~l~~~~--~g~l~~~~-~~~~i~~~~~~-g~----~~-----~~~~~~~~p~~gl~~~~~g~l~~v~~~~-~~-i~~   75 (173)
                      ....++|.|  +|.++++. .++.|..|+.. ++    ..     .+....+... .++++++++.+.++..+ .. +..
T Consensus        65 ~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~-~v~~s~~~~~l~~~~~~~~~~~~~  143 (325)
T d1pgua1          65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPIS-DISWDFEGRRLCVVGEGRDNFGVF  143 (325)
T ss_dssp             CEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEE-EEEECTTSSEEEEEECCSSCSEEE
T ss_pred             CEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEE-EEEECCCCCccceeeccccceEEE
Confidence            356799987  56666544 78888888732 11    11     1112223345 89999999885555433 22 333


Q ss_pred             Ec-cCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeecc-
Q 030700           76 VS-EEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDG-  150 (173)
Q Consensus        76 ~~-~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-  150 (173)
                      ++ ..+  ...+.    +. ....+.+++++++. ++++..                 .++.+..++..+.+....... 
T Consensus       144 ~~~~~~~~~~~~~----~h-~~~v~~~~~~~~~~~~~~~~~-----------------~d~~v~~~d~~~~~~~~~~~~~  201 (325)
T d1pgua1         144 ISWDSGNSLGEVS----GH-SQRINACHLKQSRPMRSMTVG-----------------DDGSVVFYQGPPFKFSASDRTH  201 (325)
T ss_dssp             EETTTCCEEEECC----SC-SSCEEEEEECSSSSCEEEEEE-----------------TTTEEEEEETTTBEEEEEECSS
T ss_pred             Eeecccccceeee----ec-ccccccccccccccceEEEee-----------------cccccccccccccccceecccc
Confidence            33 344  22221    11 13457789999875 444421                 236777788765554333322 


Q ss_pred             ---ccCcceEEEccCC-CEEE
Q 030700          151 ---LYFANGVALSEDE-RFLV  167 (173)
Q Consensus       151 ---~~~p~gi~~~~dg-~~ly  167 (173)
                         ......++|+||+ +++.
T Consensus       202 ~~~~~~v~~v~~~pd~~~~l~  222 (325)
T d1pgua1         202 HKQGSFVRDVEFSPDSGEFVI  222 (325)
T ss_dssp             SCTTCCEEEEEECSTTCCEEE
T ss_pred             cCCCCccEEeeeccccceecc
Confidence               2335679999974 4443

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.19  E-value=0.0025  Score=43.82  Aligned_cols=99  Identities=14%  Similarity=0.149  Sum_probs=60.8

Q ss_pred             ceEEccC--CcEEEEEeCCCeEEEEccCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeeccc
Q 030700           54 GLTTTKE--NNVIIVCDSQQGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSG  128 (173)
Q Consensus        54 gl~~~~~--g~l~~v~~~~~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~  128 (173)
                      ++.++|+  |+.+++... ..|+.++.++  .+.+... .    ......+++|||+ |.++.....            .
T Consensus         3 ~~~~sPdi~G~~v~f~~~-~dl~~~d~~~g~~~~Lt~~-~----~~~~~p~~SPDG~~iaf~~~~~~------------~   64 (281)
T d1k32a2           3 NLLLNPDIHGDRIIFVCC-DDLWEHDLKSGSTRKIVSN-L----GVINNARFFPDGRKIAIRVMRGS------------S   64 (281)
T ss_dssp             CCCEEEEEETTEEEEEET-TEEEEEETTTCCEEEEECS-S----SEEEEEEECTTSSEEEEEEEEST------------T
T ss_pred             CcccCCCCCCCEEEEEeC-CcEEEEECCCCCEEEEecC-C----CcccCEEECCCCCEEEEEEeeCC------------C
Confidence            3456677  776555433 3588888654  5555332 1    2345678999996 554421100            0


Q ss_pred             CCCceEEEEcCCCCeeEEeecc-------ccCcceEEEccCCCEEEEEe
Q 030700          129 EPHGVLLKYDPSTNQTSLVLDG-------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       129 ~~~~~v~~~d~~~~~~~~~~~~-------~~~p~gi~~~~dg~~lyv~~  170 (173)
                      .....|+.++..+++.+.+...       .......+|+|||+.|+++.
T Consensus        65 ~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~l~~~~  113 (281)
T d1k32a2          65 LNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNLIISTD  113 (281)
T ss_dssp             CCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCEEEEEC
T ss_pred             CCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCEEEEEE
Confidence            1124699999998887766432       12345688999999998864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.08  E-value=0.02  Score=39.26  Aligned_cols=142  Identities=8%  Similarity=-0.044  Sum_probs=71.2

Q ss_pred             ceEEEcCCCC-EEEEcCC-CeEEEEcCCCc-EE-Eecc-ccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEe
Q 030700           13 EDVSVDGNGV-LYTATGD-GWIKRMHPNGT-WE-DWHQ-VGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVS   86 (173)
Q Consensus        13 ~~l~~~~~g~-l~~~~~~-~~i~~~~~~g~-~~-~~~~-~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~   86 (173)
                      ...++.+++. +.++..+ +.+..++.... .. .... ...... .+++++++++|+++.....+..++. ++... ..
T Consensus       122 ~~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~-~~  199 (287)
T d1pgua2         122 PGSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPS-YISISPSETYIAAGDVMGKILLYDLQSREVK-TS  199 (287)
T ss_dssp             CEEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEE-EEEECTTSSEEEEEETTSCEEEEETTTTEEE-EC
T ss_pred             eeeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCcee-EEEeccCccccccccccccccceeecccccc-cc
Confidence            3455666654 4444444 45666664332 21 2211 233456 8999999998566655545555554 34221 11


Q ss_pred             ccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCC-CeeEEeec-cccCcceEEEccCCC
Q 030700           87 QFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPST-NQTSLVLD-GLYFANGVALSEDER  164 (173)
Q Consensus        87 ~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~-~~~~~~~~-~~~~p~gi~~~~dg~  164 (173)
                      ...+. ....+.+++.|++.........       ...++.+..++.|+.+|.++ ++...... .....++++|+|+++
T Consensus       200 ~~~~h-~~~v~~~~~~p~~~~~~~~~~~-------~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~~  271 (287)
T d1pgua2         200 RWAFR-TSKINAISWKPAEKGANEEEIE-------EDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST  271 (287)
T ss_dssp             CSCCC-SSCEEEEEECCCC------CCS-------CCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETTE
T ss_pred             ccccc-ccccceeeecccccccccccCC-------CCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCCE
Confidence            11111 1245667887766432221110       00122234567888888754 33333322 345568899999874

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.04  E-value=0.00046  Score=47.80  Aligned_cols=38  Identities=18%  Similarity=0.185  Sum_probs=32.0

Q ss_pred             ceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          132 GVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       132 ~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      +.||.+|.++++.+++..+.....+.+|||||+.|+++
T Consensus        21 ~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~   58 (281)
T d1k32a2          21 DDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIR   58 (281)
T ss_dssp             TEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEE
T ss_pred             CcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEE
Confidence            57999999999988887776667788999999988764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.02  E-value=0.0027  Score=47.52  Aligned_cols=107  Identities=13%  Similarity=0.029  Sum_probs=65.5

Q ss_pred             cccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEeccC-CccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeec
Q 030700           51 SLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFN-GSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLV  126 (173)
Q Consensus        51 p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~-~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~  126 (173)
                      .. .+.+.+++.+ +..+ .+.++.++. +| .+.+..... ........++.++|||+ |.++...         ..+.
T Consensus        19 ~~-~~~W~~d~~~-~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~---------~~~~   86 (470)
T d2bgra1          19 LY-SLRWISDHEY-LYKQ-ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNY---------VKQW   86 (470)
T ss_dssp             CC-CCEECSSSEE-EEES-SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEE---------EECS
T ss_pred             cc-CCEeCCCCEE-EEEc-CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECC---------ccee
Confidence            44 6678888887 4444 456888885 55 444443211 11123567899999997 4443211         0111


Q ss_pred             ccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          127 SGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       127 ~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      .....+.++.+|.+++++..+...........|||||+.+...
T Consensus        87 r~s~~~~~~l~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~  129 (470)
T d2bgra1          87 RHSYTASYDIYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYV  129 (470)
T ss_dssp             SSCEEEEEEEEETTTTEECCSSCCCTTEEEEEECSSTTCEEEE
T ss_pred             eeccCceEEEEECCCCcccccccCCccccccccccCcceeeEe
Confidence            1233578899999988876655544555678999999966553

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.0066  Score=45.91  Aligned_cols=134  Identities=10%  Similarity=-0.034  Sum_probs=69.5

Q ss_pred             EEEcCCCCEEEEcCCCeEEEEcC-CCcEEEeccc--c--CccccceEEccCCcEEEEEeCCC---------eEEEEcc-C
Q 030700           15 VSVDGNGVLYTATGDGWIKRMHP-NGTWEDWHQV--G--SQSLLGLTTTKENNVIIVCDSQQ---------GLLKVSE-E   79 (173)
Q Consensus        15 l~~~~~g~l~~~~~~~~i~~~~~-~g~~~~~~~~--~--~~p~~gl~~~~~g~l~~v~~~~~---------~i~~~~~-~   79 (173)
                      +.|.+++.++..+.++.|+.++. +++...+...  .  -.+. ...+++||+.+++.....         ..+..+. +
T Consensus        22 ~~W~~~~~~~~~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~  100 (465)
T d1xfda1          22 AKWISDTEFIYREQKGTVRLWNVETNTSTVLIEGKKIESLRAI-RYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPH  100 (465)
T ss_dssp             CCBSSSSCBCCCCSSSCEEEBCGGGCCCEEEECTTTTTTTTCS-EEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSS
T ss_pred             CEEeCCCcEEEEeCCCcEEEEECCCCCEEEEEcCccccccccc-eeEECCCCCeEEEEEcccceeEeeccccEEEEEccC
Confidence            45667776666666778999985 4443332221  1  1344 667899998755543221         2333442 4


Q ss_pred             C-cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeec-c------
Q 030700           80 G-VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLD-G------  150 (173)
Q Consensus        80 g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~-~------  150 (173)
                      + ...+......  -.......++|||+ +.++..                   +.||..+..++....+.. +      
T Consensus       101 ~~~~~l~~~~~~--~~~l~~~~wSPDG~~iafv~~-------------------~nl~~~~~~~~~~~~lt~~g~~~~i~  159 (465)
T d1xfda1         101 GDPQSLDPPEVS--NAKLQYAGWGPKGQQLIFIFE-------------------NNIYYCAHVGKQAIRVVSTGKEGVIY  159 (465)
T ss_dssp             CCCEECCCTTCC--SCCCSBCCBCSSTTCEEEEET-------------------TEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred             CceeeccCccCC--ccccceeeeccCCceEEEEec-------------------ceEEEEecCCCceEEEecccCcceee
Confidence            5 4444221111  01233466788885 433311                   245555544333222221 1      


Q ss_pred             ------------ccCcceEEEccCCCEEEEEe
Q 030700          151 ------------LYFANGVALSEDERFLVVCE  170 (173)
Q Consensus       151 ------------~~~p~gi~~~~dg~~lyv~~  170 (173)
                                  .....++-|||||++|++..
T Consensus       160 nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~  191 (465)
T d1xfda1         160 NGLSDWLYEEEILKTHIAHWWSPDGTRLAYAA  191 (465)
T ss_dssp             EEECCHHHHHTTSSSSEEEEECTTSSEEEEEE
T ss_pred             ccccchhhhhhhccccceEEECCCCCeEEEEE
Confidence                        12235788999999988763

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.013  Score=39.91  Aligned_cols=88  Identities=16%  Similarity=0.072  Sum_probs=57.8

Q ss_pred             cEEEEEeCCC-----eEEEEccCC--cEEEEeccCCccccCCccEEEcCCCc-EEEEeCcCCcCcccceeeecccCCCce
Q 030700           62 NVIIVCDSQQ-----GLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASDGS-LYFTVSSTKFTPAEYYLDLVSGEPHGV  133 (173)
Q Consensus        62 ~l~~v~~~~~-----~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~~~~~~~~~~~~~~~~~~~~~~~~  133 (173)
                      |++|++....     .|+.+|.+|  ...+....     ......+++|||+ |.++...               .....
T Consensus         5 ~iay~~~~~~~~~~~~l~i~d~dG~~~~~l~~~~-----~~~~sP~wSPDGk~IAf~~~~---------------~~~~~   64 (269)
T d2hqsa1           5 RIAYVVQTNGGQFPYELRVSDYDGYNQFVVHRSP-----QPLMSPAWSPDGSKLAYVTFE---------------SGRSA   64 (269)
T ss_dssp             EEEEEEECSSSSCCEEEEEEETTSCSCEEEEEES-----SCEEEEEECTTSSEEEEEECT---------------TSSCE
T ss_pred             eEEEEEEeCCCCceEEEEEEcCCCCCcEEEecCC-----CceeeeEECCCCCEEEEEEee---------------ccCcc
Confidence            5667776532     477777777  45544321     1223568999996 5444322               12347


Q ss_pred             EEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEE
Q 030700          134 LLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       134 v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~  169 (173)
                      ++.++..++..+.+...........|+|||+.++..
T Consensus        65 ~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~i~~~  100 (269)
T d2hqsa1          65 LVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLAFA  100 (269)
T ss_dssp             EEEEETTTCCEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             eeeeecccCceeEEeeeecccccceecCCCCeeeEe
Confidence            888888888777777777777788999999977653

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.93  E-value=0.0086  Score=43.56  Aligned_cols=102  Identities=12%  Similarity=0.140  Sum_probs=56.5

Q ss_pred             ccccceEEccCCcEEEEEeCCCeEEEE-cc-CC--cEEEEec--cCCccccCCccEEEcCCCcEEEEeCcCCcCccccee
Q 030700           50 QSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EG--VTVLVSQ--FNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYL  123 (173)
Q Consensus        50 ~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g--~~~~~~~--~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~  123 (173)
                      ... .+++++++ + +++...++.+++ +. .+  ...+...  ..+. ....+.++++|||+++++-...         
T Consensus       186 ~~~-~v~~s~dg-~-lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h-~~~V~~l~~spdg~~l~sgs~D---------  252 (393)
T d1sq9a_         186 FAT-SVDISERG-L-IATGFNNGTVQISELSTLRPLYNFESQHSMINN-SNSIRSVKFSPQGSLLAIAHDS---------  252 (393)
T ss_dssp             CCC-EEEECTTS-E-EEEECTTSEEEEEETTTTEEEEEEECCC---CC-CCCEEEEEECSSTTEEEEEEEE---------
T ss_pred             cEE-EEEECCCC-E-EEEEeCCCcEEEEeecccccccccccccccccc-cceEEEcccccccceeeeecCC---------
Confidence            356 78999997 4 334444454444 43 44  2222211  1111 1356789999999977763210         


Q ss_pred             eecccCCCceEEEEcCCCCeeEEeec--------------cccCcceEEEccCCCEEEEE
Q 030700          124 DLVSGEPHGVLLKYDPSTNQTSLVLD--------------GLYFANGVALSEDERFLVVC  169 (173)
Q Consensus       124 ~~~~~~~~~~v~~~d~~~~~~~~~~~--------------~~~~p~gi~~~~dg~~lyv~  169 (173)
                           ...+.+..+|.++++......              .-...+.|+|+||+++|+-+
T Consensus       253 -----~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~  307 (393)
T d1sq9a_         253 -----NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSA  307 (393)
T ss_dssp             -----TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEE
T ss_pred             -----CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEE
Confidence                 011345667877665433322              12334679999999977654

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.82  E-value=0.019  Score=39.48  Aligned_cols=59  Identities=10%  Similarity=0.149  Sum_probs=41.6

Q ss_pred             CCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           95 FANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        95 ~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      ..+.++++|+|.++++-                 ..+|.|..+|.++++............-++|+|+++.|.++-
T Consensus       253 ~v~~l~~sp~~~~lasg-----------------~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         253 PVNSIEFSPRHKFLYTA-----------------GSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             CEEEEEECTTTCCEEEE-----------------ETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             cceeEEecCCccEEEEE-----------------CCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence            34689999999877763                 245899999998776433333333344688999999888764

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.66  E-value=0.045  Score=37.10  Aligned_cols=71  Identities=13%  Similarity=0.044  Sum_probs=40.0

Q ss_pred             eEEEEcCCCc-EEEeccccCccccceEEccCCcEEEEEeCC---CeEEEEccCC--cEEEEeccCCccccCCccEEEcCC
Q 030700           31 WIKRMHPNGT-WEDWHQVGSQSLLGLTTTKENNVIIVCDSQ---QGLLKVSEEG--VTVLVSQFNGSQLRFANDVIEASD  104 (173)
Q Consensus        31 ~i~~~~~~g~-~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~---~~i~~~~~~g--~~~~~~~~~~~~~~~~~~l~~~~d  104 (173)
                      .|+..|.+|+ ...+........ ..+++|||+.|.++...   ..++..+..+  .+.+... .    .......++|+
T Consensus        20 ~l~i~d~dG~~~~~l~~~~~~~~-sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~~~spd   93 (269)
T d2hqsa1          20 ELRVSDYDGYNQFVVHRSPQPLM-SPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-P----RHNGAPAFSPD   93 (269)
T ss_dssp             EEEEEETTSCSCEEEEEESSCEE-EEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-S----SCEEEEEECTT
T ss_pred             EEEEEcCCCCCcEEEecCCCcee-eeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-e----cccccceecCC
Confidence            4777777774 333333344445 67899999876554333   2466666544  4443322 1    23455677888


Q ss_pred             CcE
Q 030700          105 GSL  107 (173)
Q Consensus       105 G~~  107 (173)
                      |..
T Consensus        94 g~~   96 (269)
T d2hqsa1          94 GSK   96 (269)
T ss_dssp             SSE
T ss_pred             CCe
Confidence            863

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.54  E-value=0.05  Score=36.14  Aligned_cols=139  Identities=17%  Similarity=0.094  Sum_probs=85.8

Q ss_pred             ceecCCccCCcceEEEcCCCCEEEEcCCCeEEEEcCCC---c-----EEEeccccC--ccccceEEccCCcEEEEEeCCC
Q 030700            2 IKLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMHPNG---T-----WEDWHQVGS--QSLLGLTTTKENNVIIVCDSQQ   71 (173)
Q Consensus         2 ~~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~~~g---~-----~~~~~~~~~--~p~~gl~~~~~g~l~~v~~~~~   71 (173)
                      .+++++.+..-.-|+++|+|+||..-. +++|+=.+..   .     ..++ ..++  .-. -|-|||.|-| |+... .
T Consensus        32 ~~lGk~g~~n~~~i~fsP~G~LyaVr~-~~lY~Gp~~s~~nq~wf~~atrI-G~ggWn~Fk-flffdP~G~L-yaVt~-~  106 (235)
T d1tl2a_          32 TLIGKGGWSNFKFLFLSPGGELYGVLN-DKIYKGTPPTHDNDNWMGRAKKI-GNGGWNQFQ-FLFFDPNGYL-YAVSK-D  106 (235)
T ss_dssp             EEEESSSCTTCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHCEEE-ECSCGGGCS-EEEECTTSCE-EEEET-T
T ss_pred             hhcCcccccceeEEEECCCCcEEEEEC-CeEEECCCCCcchHHHHHhhhhc-ccCcccceE-EEEECCCceE-EEecC-c
Confidence            467777788888899999999996654 4788765322   1     1222 2232  234 6788999988 87654 4


Q ss_pred             eEEEEcc-CC--------cEEEEeccCCccccCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCC
Q 030700           72 GLLKVSE-EG--------VTVLVSQFNGSQLRFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTN  142 (173)
Q Consensus        72 ~i~~~~~-~g--------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~  142 (173)
                      .+++-.+ +.        ...+...  +  -+....|-++|+|.+|...+.                   .+++-.|..+
T Consensus       107 ~LYr~~pPtn~~q~W~g~a~~vG~~--g--w~df~~lFFdP~G~LYaV~~~-------------------~l~k~~pP~~  163 (235)
T d1tl2a_         107 KLYKASPPQSDTDNWIARATEVGSG--G--WSGFKFLFFHPNGYLYAVHGQ-------------------QFYKALPPVS  163 (235)
T ss_dssp             EEEEESCCCSTTCCHHHHSEEEECS--S--GGGEEEEEECTTSCEEEEETT-------------------EEEEECCCSS
T ss_pred             ceecCCcCcccchhhhhhhhhhccC--C--cCceeEEEECCCceEEEEECC-------------------cEEEcCCCCC
Confidence            6777652 22        2232211  1  123457899999999998532                   4665555422


Q ss_pred             -------eeEEee-ccccCcceEEEccCCCEEEE
Q 030700          143 -------QTSLVL-DGLYFANGVALSEDERFLVV  168 (173)
Q Consensus       143 -------~~~~~~-~~~~~p~gi~~~~dg~~lyv  168 (173)
                             ..+.+- .+...+..|.|+|||..-.|
T Consensus       164 ~~d~WL~~st~igr~~w~~~~fi~Fs~dG~L~~v  197 (235)
T d1tl2a_         164 NQDNWLARATKIGQGGWDTFKFLFFSSVGTLFGV  197 (235)
T ss_dssp             TTCCHHHHCEEEESSSGGGEEEEEECTTSCEEEE
T ss_pred             CCchhhhhhhhhccCcccCceEEEECCCCcEEEE
Confidence                   112233 34566789999999974443

>d1tl2a_ b.67.1.1 (A:) Tachylectin-2 {Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]}

class: All beta proteins
fold: 5-bladed beta-propeller
superfamily: Tachylectin-2
family: Tachylectin-2
domain: Tachylectin-2
species: Japanese horseshoe crab (Tachypleus tridentatus) [TaxId: 6853]

Probab=96.25  E-value=0.064  Score=35.62  Aligned_cols=101  Identities=18%  Similarity=0.072  Sum_probs=63.0

Q ss_pred             eecCCccCCcceEEEcCCCCEEEEcCCCeEEEEc-CCCcE-------EEeccc-cCccccceEEccCCcEEEEEeCCCeE
Q 030700            3 KLGEGIVNHPEDVSVDGNGVLYTATGDGWIKRMH-PNGTW-------EDWHQV-GSQSLLGLTTTKENNVIIVCDSQQGL   73 (173)
Q Consensus         3 ~~~~~~~~~p~~l~~~~~g~l~~~~~~~~i~~~~-~~g~~-------~~~~~~-~~~p~~gl~~~~~g~l~~v~~~~~~i   73 (173)
                      +++.+.-+.=.-+.+||+|-||+... +.|+|-. ++...       .++-.. ...-. -|-|+|+|.| |..... ++
T Consensus        80 rIG~ggWn~FkflffdP~G~LyaVt~-~~LYr~~pPtn~~q~W~g~a~~vG~~gw~df~-~lFFdP~G~L-YaV~~~-~l  155 (235)
T d1tl2a_          80 KIGNGGWNQFQFLFFDPNGYLYAVSK-DKLYKASPPQSDTDNWIARATEVGSGGWSGFK-FLFFHPNGYL-YAVHGQ-QF  155 (235)
T ss_dssp             EEECSCGGGCSEEEECTTSCEEEEET-TEEEEESCCCSTTCCHHHHSEEEECSSGGGEE-EEEECTTSCE-EEEETT-EE
T ss_pred             hcccCcccceEEEEECCCceEEEecC-cceecCCcCcccchhhhhhhhhhccCCcCcee-EEEECCCceE-EEEECC-cE
Confidence            45555455556689999999995553 7999987 34322       222111 12345 6788999998 866444 56


Q ss_pred             EEEc-cCC--------cEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           74 LKVS-EEG--------VTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        74 ~~~~-~~g--------~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      ++-. +.+        .+.+....    -..++.+.++|+|+||...
T Consensus       156 ~k~~pP~~~~d~WL~~st~igr~~----w~~~~fi~Fs~dG~L~~v~  198 (235)
T d1tl2a_         156 YKALPPVSNQDNWLARATKIGQGG----WDTFKFLFFSSVGTLFGVQ  198 (235)
T ss_dssp             EEECCCSSTTCCHHHHCEEEESSS----GGGEEEEEECTTSCEEEEE
T ss_pred             EEcCCCCCCCchhhhhhhhhccCc----ccCceEEEECCCCcEEEEe
Confidence            6655 222        22332111    1356789999999999884

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.00  E-value=0.08  Score=36.48  Aligned_cols=61  Identities=7%  Similarity=-0.010  Sum_probs=35.9

Q ss_pred             eEEEcCCCCEEE-EcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEEcc
Q 030700           14 DVSVDGNGVLYT-ATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE   78 (173)
Q Consensus        14 ~l~~~~~g~l~~-~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~   78 (173)
                      ++.+  +|++.+ +..++.|..||. +++... +....+... ++++++++.+ +.+.....+...+.
T Consensus        18 c~~~--~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~-~l~~s~~~~l-~s~s~D~~i~iw~~   81 (355)
T d1nexb2          18 CLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVW-ALKYAHGGIL-VSGSTDRTVRVWDI   81 (355)
T ss_dssp             EEEE--ETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEE-EEEEETTTEE-EEEETTCCEEEEET
T ss_pred             EEEE--CCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEE-EEEEcCCCEE-EEEecccccccccc
Confidence            4444  455554 448899999995 455433 333345566 9999887544 55544443444443

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.90  E-value=0.18  Score=36.47  Aligned_cols=136  Identities=9%  Similarity=0.112  Sum_probs=70.2

Q ss_pred             cCCCCEEE-EcCCCeEEEEcCCCcEEEeccccCccccceEE------ccCC-cEEEEEeCCC---e--EEEEccC-C-cE
Q 030700           18 DGNGVLYT-ATGDGWIKRMHPNGTWEDWHQVGSQSLLGLTT------TKEN-NVIIVCDSQQ---G--LLKVSEE-G-VT   82 (173)
Q Consensus        18 ~~~g~l~~-~~~~~~i~~~~~~g~~~~~~~~~~~p~~gl~~------~~~g-~l~~v~~~~~---~--i~~~~~~-g-~~   82 (173)
                      +|+..|.+ ++.++.|+.++.+|+.....+ .+.++ .+-+      ..+. .++++++...   .  ++.++.. + ..
T Consensus        37 ~p~~SlI~gTdK~~Gl~vYdL~G~~l~~~~-~Gr~N-NVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~  114 (353)
T d1h6la_          37 NPQNSKLITTNKKSGLAVYSLEGKMLHSYH-TGKLN-NVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQ  114 (353)
T ss_dssp             CGGGCEEEEEETTSCCEEEETTCCEEEECC-SSCEE-EEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEE
T ss_pred             CcCccEEEEEcCcCCEEEEcCCCcEEEecc-cCCcC-ccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccc
Confidence            34455554 556667999999998776643 34444 3333      2222 2445565542   3  3444433 3 33


Q ss_pred             EEEeccC--CccccCCccEEE--cC-CCcEEEEeCcCCcCcccceeeecccCCCceE--EEEcC-CCCeeE-Eee---cc
Q 030700           83 VLVSQFN--GSQLRFANDVIE--AS-DGSLYFTVSSTKFTPAEYYLDLVSGEPHGVL--LKYDP-STNQTS-LVL---DG  150 (173)
Q Consensus        83 ~~~~~~~--~~~~~~~~~l~~--~~-dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v--~~~d~-~~~~~~-~~~---~~  150 (173)
                      .+.....  ......+.++++  ++ +|.+|+....                ..|.+  |.+.. ..+.+. ...   ..
T Consensus       115 ~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----------------k~G~v~q~~l~~~~~g~v~~~lvr~f~~  178 (353)
T d1h6la_         115 SITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----------------KEGEFEQYELNADKNGYISGKKVRAFKM  178 (353)
T ss_dssp             ECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----------------SSSEEEEEEEEECTTSSEEEEEEEEEEC
T ss_pred             cccccccccccccCcceEEEEEecCCCCeEEEEEEc----------------CCceEEEEEEEcCCCCceeeEeeeccCC
Confidence            3321100  011235789998  55 4665543211                12333  33332 223221 111   22


Q ss_pred             ccCcceEEEccCCCEEEEEec
Q 030700          151 LYFANGVALSEDERFLVVCES  171 (173)
Q Consensus       151 ~~~p~gi~~~~dg~~lyv~~~  171 (173)
                      ...+.||+++++.++|||++=
T Consensus       179 ~~q~EGCVvDde~~~LyisEE  199 (353)
T d1h6la_         179 NSQTEGMAADDEYGSLYIAEE  199 (353)
T ss_dssp             SSCEEEEEEETTTTEEEEEET
T ss_pred             CCccceEEEeCCCCcEEEecC
Confidence            456789999999999999973

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.81  E-value=0.076  Score=36.23  Aligned_cols=74  Identities=16%  Similarity=0.067  Sum_probs=43.5

Q ss_pred             ecCCccCCcceEEEcCCCCEEEE-cCCCeEEEEcCC--CcEEEe---ccccCccccceEEccCC-cEEEEEeCCCeEEEE
Q 030700            4 LGEGIVNHPEDVSVDGNGVLYTA-TGDGWIKRMHPN--GTWEDW---HQVGSQSLLGLTTTKEN-NVIIVCDSQQGLLKV   76 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~g~l~~~-~~~~~i~~~~~~--g~~~~~---~~~~~~p~~gl~~~~~g-~l~~v~~~~~~i~~~   76 (173)
                      +.++.-+...+|+|+|+|.++++ ..++.|..|+.+  .....+   ........ .++|.+++ .+++.+.....+...
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~-~v~f~~~~~~~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL-CCNFIDNTDLQIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEE-EEEEEESSSEEEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEE-EEEEeCCCCCEEEEcccccceeee
Confidence            44555556689999998876654 488888888742  222222   12334456 89998765 453444333334444


Q ss_pred             cc
Q 030700           77 SE   78 (173)
Q Consensus        77 ~~   78 (173)
                      +.
T Consensus        85 ~~   86 (342)
T d1yfqa_          85 DL   86 (342)
T ss_dssp             CS
T ss_pred             ec
Confidence            43

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.67  E-value=0.18  Score=34.59  Aligned_cols=127  Identities=8%  Similarity=-0.029  Sum_probs=67.1

Q ss_pred             cCCcceEEEcCCCCEE-EEcCCCeEEEEcC-CCcEEE-eccccCccccceEEccCCcEEEEEeCCCeEEEE-cc-CCcEE
Q 030700            9 VNHPEDVSVDGNGVLY-TATGDGWIKRMHP-NGTWED-WHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKV-SE-EGVTV   83 (173)
Q Consensus         9 ~~~p~~l~~~~~g~l~-~~~~~~~i~~~~~-~g~~~~-~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~-~~-~g~~~   83 (173)
                      ......+.+++++..+ ++..++.|..++. ++.... +........ .+++++  ++++.+ ..++.+++ +. ++...
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~-~~~~~~--~~l~~~-~~dg~i~iwd~~~~~~~  276 (355)
T d1nexb2         201 TDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVG-LLRLSD--KFLVSA-AADGSIRGWDANDYSRK  276 (355)
T ss_dssp             SSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCC-EEEECS--SEEEEE-CTTSEEEEEETTTCCEE
T ss_pred             ccccccccccccceeeecccccceEEeeecccccccccccccccccc-cccccc--ceeeee-eccccccccccccccee
Confidence            3455678888877554 5557888888884 454433 222233445 777754  563444 44444444 44 33333


Q ss_pred             EEeccCCccccCCcc-EEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEE-eecc-ccCcceEEEc
Q 030700           84 LVSQFNGSQLRFAND-VIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSL-VLDG-LYFANGVALS  160 (173)
Q Consensus        84 ~~~~~~~~~~~~~~~-l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~-~~~p~gi~~~  160 (173)
                      +....     ..... ..+.+++.++++.                  .++.|..+|.++++... ...+ ......++|+
T Consensus       277 ~~~~~-----~~~~~~~~~~~~~~~l~~g------------------~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~  333 (355)
T d1nexb2         277 FSYHH-----TNLSAITTFYVSDNILVSG------------------SENQFNIYNLRSGKLVHANILKDADQIWSVNFK  333 (355)
T ss_dssp             EEEEC-----TTCCCCCEEEECSSEEEEE------------------ETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEE
T ss_pred             ccccc-----CCceEEEEEcCCCCEEEEE------------------eCCEEEEEECCCCCEEEEEecCCCCCEEEEEEc
Confidence            32111     12222 3456677777663                  23688889988776421 1111 2223456666


Q ss_pred             cC
Q 030700          161 ED  162 (173)
Q Consensus       161 ~d  162 (173)
                      |+
T Consensus       334 ~~  335 (355)
T d1nexb2         334 GK  335 (355)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.55  E-value=0.24  Score=38.09  Aligned_cols=110  Identities=12%  Similarity=0.165  Sum_probs=60.8

Q ss_pred             CCCEEEEcC-CCeEEEEcC-C-CcEE-Eecc---cc--------CccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cE
Q 030700           20 NGVLYTATG-DGWIKRMHP-N-GTWE-DWHQ---VG--------SQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VT   82 (173)
Q Consensus        20 ~g~l~~~~~-~~~i~~~~~-~-g~~~-~~~~---~~--------~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~   82 (173)
                      +|.||+++. .+.|+.+|. + |+.. ++..   ..        .... |+++. ++++ |+......++.+|. +| ..
T Consensus        62 ~g~vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i-~~~~~~g~l~alda~tG~~~  138 (571)
T d2ad6a1          62 GDMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDR-GLAYG-AGQI-VKKQANGHLLALDAKTGKIN  138 (571)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-TTEE-EEECTTSEEEEEETTTCCEE
T ss_pred             CCEEEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCC-cceee-CCeE-EEEeCCCcEEeeehhhhhhh
Confidence            789999884 688999984 4 7532 1110   00        1124 66764 5577 87776677999995 67 32


Q ss_pred             EEEeccCCccccCC-ccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeE
Q 030700           83 VLVSQFNGSQLRFA-NDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTS  145 (173)
Q Consensus        83 ~~~~~~~~~~~~~~-~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~  145 (173)
                      .-....+....... ..-.+. ++.+|+.......            ...+.|..+|..||+..
T Consensus       139 w~~~~~~~~~~~~~t~~p~v~-~~~vivg~~~~~~------------~~~G~v~a~D~~TG~~~  189 (571)
T d2ad6a1         139 WEVEVCDPKVGSTLTQAPFVA-KDTVLMGCSGAEL------------GVRGAVNAFDLKTGELK  189 (571)
T ss_dssp             EEEECCCGGGTCBCCSCCEEE-TTEEEEECBCGGG------------TCCCEEEEEETTTCCEE
T ss_pred             ccccccccccccceeecCeEe-CCeEEEeeccccc------------cccCcEEEEECCCCcEE
Confidence            22222111111111 111222 4678886433211            23478899998888753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.42  E-value=0.33  Score=37.15  Aligned_cols=58  Identities=17%  Similarity=0.266  Sum_probs=36.6

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE-Eeccc-----------cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE-DWHQV-----------GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~-~~~~~-----------~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      +|.||+++.++.|+.+|. +|+.. ++...           ..... +++.. ++++ |+......++.+|. +|
T Consensus        66 ~g~vyv~t~~~~v~AlDa~tG~~lW~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~v-~~~~~~g~l~Alda~tG  137 (560)
T d1kv9a2          66 DGVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNR-GVALW-GDKV-YVGTLDGRLIALDAKTG  137 (560)
T ss_dssp             TTEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCC-CCEEE-BTEE-EEECTTSEEEEEETTTC
T ss_pred             CCEEEEECCCCeEEEEeCCCCCEEEEECCCCCcccccccccccccc-Cccee-CCeE-EEEeCCCEEEEEECCCC
Confidence            789999998899999996 56532 11100           01122 44443 3456 77776677999995 77

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.39  E-value=0.21  Score=33.97  Aligned_cols=89  Identities=10%  Similarity=0.044  Sum_probs=43.8

Q ss_pred             CEEEEcCCCeEEEEcCCC-cEE-EeccccCccccceEEccCCcEEEEEeCCCeEEEEc-cCC--cEEEEeccCCccccCC
Q 030700           22 VLYTATGDGWIKRMHPNG-TWE-DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVS-EEG--VTVLVSQFNGSQLRFA   96 (173)
Q Consensus        22 ~l~~~~~~~~i~~~~~~g-~~~-~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~-~~g--~~~~~~~~~~~~~~~~   96 (173)
                      .|+.+..++.|..|+... +.. .+.........-.++..++++++.+.....|...+ .+|  +..+.....+......
T Consensus       229 ~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v  308 (342)
T d2ovrb2         229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVV  308 (342)
T ss_dssp             EEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEECSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEE
T ss_pred             EEEEEcCCCEEEEEecccccccccccccceeeeceeecccCCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCE
Confidence            344444788888888533 332 22221111110233444556734444333344444 356  4444332221111246


Q ss_pred             ccEEEcCCCcEEEE
Q 030700           97 NDVIEASDGSLYFT  110 (173)
Q Consensus        97 ~~l~~~~dG~~~v~  110 (173)
                      ..++++|+|.++++
T Consensus       309 ~~v~~s~~~~~la~  322 (342)
T d2ovrb2         309 WRIRASNTKLVCAV  322 (342)
T ss_dssp             EEEEECSSEEEEEE
T ss_pred             EEEEECCCCCEEEE
Confidence            78999999877666

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.16  E-value=0.35  Score=34.89  Aligned_cols=102  Identities=17%  Similarity=0.276  Sum_probs=61.2

Q ss_pred             cCCcceEEE--cC-CCCEE--EEcCCCeEEEEc----CCCcEE----EeccccCccccceEEccCCcEEEEEeCCCeEEE
Q 030700            9 VNHPEDVSV--DG-NGVLY--TATGDGWIKRMH----PNGTWE----DWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLK   75 (173)
Q Consensus         9 ~~~p~~l~~--~~-~g~l~--~~~~~~~i~~~~----~~g~~~----~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~   75 (173)
                      +..+-|+|.  ++ +|.+|  +++..|.+..|.    .++.+.    +-......+. |+++|.+.+.||+++...++++
T Consensus       127 ~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~E-GCVvDde~~~LyisEE~~Giw~  205 (353)
T d1h6la_         127 IDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTE-GMAADDEYGSLYIAEEDEAIWK  205 (353)
T ss_dssp             SSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEE-EEEEETTTTEEEEEETTTEEEE
T ss_pred             cCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccc-eEEEeCCCCcEEEecCccceEE
Confidence            345779998  55 57666  455677765543    234332    2224456788 9999988666699998889998


Q ss_pred             Ecc--CC--cEEEEeccCCc-cccCCccEEEcC--C--CcEEEEe
Q 030700           76 VSE--EG--VTVLVSQFNGS-QLRFANDVIEAS--D--GSLYFTV  111 (173)
Q Consensus        76 ~~~--~g--~~~~~~~~~~~-~~~~~~~l~~~~--d--G~~~v~~  111 (173)
                      ++.  +.  ...+.....+. -..-|.+|++-.  +  |.|++++
T Consensus       206 ~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSs  250 (353)
T d1h6la_         206 FSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASS  250 (353)
T ss_dssp             EESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEE
T ss_pred             EEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEc
Confidence            873  33  33333333332 223567777653  3  3455554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=94.96  E-value=0.5  Score=36.20  Aligned_cols=109  Identities=15%  Similarity=0.238  Sum_probs=59.4

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEEEecc------------c-cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC-cEE
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWEDWHQ------------V-GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG-VTV   83 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~~~~~------------~-~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~   83 (173)
                      +|.||+++.++.|+.+|. +|+. .|.-            . ..... ++++. ++++ |+......++.+|. +| ...
T Consensus        77 ~g~vyv~t~~~~v~AlDa~TG~~-~W~~~~~~~~~~~~~~~~~~~~~-g~~~~-~~~v-~~~t~~g~l~alda~tG~~~W  152 (573)
T d1kb0a2          77 DGIMYVSASWSVVHAIDTRTGNR-IWTYDPQIDRSTGFKGCCDVVNR-GVALW-KGKV-YVGAWDGRLIALDAATGKEVW  152 (573)
T ss_dssp             TTEEEEECGGGCEEEEETTTTEE-EEEECCCCCGGGGGGSSSCSCCC-CCEEE-TTEE-EEECTTSEEEEEETTTCCEEE
T ss_pred             CCEEEEECCCCeEEEEeCCCCCe-EEEeCCCCCcccccccccccccc-cceEE-CCcE-EEEecccceeeecccccccee
Confidence            789999998899999996 4653 2210            0 01123 55553 4466 77766667999995 67 332


Q ss_pred             EEeccCCccc-cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           84 LVSQFNGSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        84 ~~~~~~~~~~-~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      -....++... .....--+-.++.+++......            ....|.|..+|+.||+.
T Consensus       153 ~~~~~~~~~~~~~~~~~p~v~~~~vivg~~~~~------------~~~~G~v~a~D~~TG~~  202 (573)
T d1kb0a2         153 HQNTFEGQKGSLTITGAPRVFKGKVIIGNGGAE------------YGVRGYITAYDAETGER  202 (573)
T ss_dssp             EEETTTTCCSSCBCCSCCEEETTEEEECCBCTT------------TCCBCEEEEEETTTCCE
T ss_pred             cccCccCCcceEEeecceEEEeccEEEeecccc------------ccccceEEEEecCCccc
Confidence            2222222210 0111111112556777543211            12346788888888765

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.27  E-value=0.079  Score=39.75  Aligned_cols=100  Identities=9%  Similarity=-0.038  Sum_probs=56.7

Q ss_pred             EEccCCcEEEEEeCCCeEEEEcc-CC-cEEEEeccCCccccCCccEEEcCCCc-EEEE-eCcCCcCcccceeeecccCCC
Q 030700           56 TTTKENNVIIVCDSQQGLLKVSE-EG-VTVLVSQFNGSQLRFANDVIEASDGS-LYFT-VSSTKFTPAEYYLDLVSGEPH  131 (173)
Q Consensus        56 ~~~~~g~l~~v~~~~~~i~~~~~-~g-~~~~~~~~~~~~~~~~~~l~~~~dG~-~~v~-~~~~~~~~~~~~~~~~~~~~~  131 (173)
                      .+.+++.+ +..+....++.++. ++ .+.+.....- ....+....++|||+ +++. +....+          ..+..
T Consensus        23 ~W~~~~~~-~~~~~~g~i~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~SpD~~~vl~~~~~~~~~----------r~s~~   90 (465)
T d1xfda1          23 KWISDTEF-IYREQKGTVRLWNVETNTSTVLIEGKKI-ESLRAIRYEISPDREYALFSYNVEPIY----------QHSYT   90 (465)
T ss_dssp             CBSSSSCB-CCCCSSSCEEEBCGGGCCCEEEECTTTT-TTTTCSEEEECTTSSEEEEEESCCCCS----------SSCCC
T ss_pred             EEeCCCcE-EEEeCCCcEEEEECCCCCEEEEEcCccc-cccccceeEECCCCCeEEEEEccccee----------Eeecc
Confidence            45566666 44444445777775 55 5555443221 112556788999997 4444 322111          11234


Q ss_pred             ceEEEEcCCCCeeEEeeccccC---cceEEEccCCCEEE
Q 030700          132 GVLLKYDPSTNQTSLVLDGLYF---ANGVALSEDERFLV  167 (173)
Q Consensus       132 ~~v~~~d~~~~~~~~~~~~~~~---p~gi~~~~dg~~ly  167 (173)
                      +.++.+|..++....+......   ..-..|||||+.|.
T Consensus        91 ~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~ia  129 (465)
T d1xfda1          91 GYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLI  129 (465)
T ss_dssp             SEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEE
T ss_pred             ccEEEEEccCCceeeccCccCCccccceeeeccCCceEE
Confidence            6888999988877666432211   12367889888663

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=88.53  E-value=3.4  Score=31.61  Aligned_cols=111  Identities=14%  Similarity=0.078  Sum_probs=57.8

Q ss_pred             CCCEEEEc-CCCeEEEEcC--CCcEE-Eec-c---------ccC-ccccceEEccC----CcEEEEEeCCCeEEEEcc-C
Q 030700           20 NGVLYTAT-GDGWIKRMHP--NGTWE-DWH-Q---------VGS-QSLLGLTTTKE----NNVIIVCDSQQGLLKVSE-E   79 (173)
Q Consensus        20 ~g~l~~~~-~~~~i~~~~~--~g~~~-~~~-~---------~~~-~p~~gl~~~~~----g~l~~v~~~~~~i~~~~~-~   79 (173)
                      +|.||++. ..+.++.++.  +|+.. ++. .         .+. .-. |+++-++    +.++|+......++.+|. +
T Consensus        62 ~g~ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~R-Gv~~~~~~~~~~~~v~~~t~dg~l~Alda~t  140 (596)
T d1w6sa_          62 DGKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNR-GLAYWPGDGKTPALILKTQLDGNVAALNAET  140 (596)
T ss_dssp             TTEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCC-CCEEECCCSSSCCEEEEECTTSEEEEEETTT
T ss_pred             CCEEEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccc-eeEEecCCCCCceEEEEEeCCCCeEeecccc
Confidence            78999876 4578898873  47533 111 0         001 124 6666432    223377766667999995 6


Q ss_pred             C-cEEEEeccCCccc-cCCccEEEcCCCcEEEEeCcCCcCcccceeeecccCCCceEEEEcCCCCee
Q 030700           80 G-VTVLVSQFNGSQL-RFANDVIEASDGSLYFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQT  144 (173)
Q Consensus        80 g-~~~~~~~~~~~~~-~~~~~l~~~~dG~~~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~  144 (173)
                      | ...-....+.... .....-.+. ++.+|+......            ....|.|.-+|..||+.
T Consensus       141 G~~~w~~~~~d~~~~~~~t~~P~v~-~~~vivg~~~~e------------~~~~G~v~A~Da~TG~~  194 (596)
T d1w6sa_         141 GETVWKVENSDIKVGSTLTIAPYVV-KDKVIIGSSGAE------------LGVRGYLTAYDVKTGEQ  194 (596)
T ss_dssp             CCEEEEEECCCGGGTCBCCSCCEEE-TTEEEECCBCGG------------GTCCCEEEEEETTTCCE
T ss_pred             CceeccccccccccccccccCCcEE-CCeEEEeecccc------------ccccCceEEEECCCCcE
Confidence            7 3222221111110 111111222 557888643211            12347888899888875

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=87.75  E-value=4.5  Score=30.68  Aligned_cols=58  Identities=12%  Similarity=0.296  Sum_probs=38.6

Q ss_pred             CCCEEEEcCCCeEEEEcC-CCcEE-Eec-cc--------cCccccceEEccCCcEEEEEeCCCeEEEEcc-CC
Q 030700           20 NGVLYTATGDGWIKRMHP-NGTWE-DWH-QV--------GSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EG   80 (173)
Q Consensus        20 ~g~l~~~~~~~~i~~~~~-~g~~~-~~~-~~--------~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g   80 (173)
                      +|.||+++.+++|+.+|+ +|+.. ++. ..        ..... |+++. ++++ |+......++.+|. +|
T Consensus        68 ~g~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~r-g~a~~-~~~i-~~~t~~~~l~alda~tG  137 (582)
T d1flga_          68 DGVIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNR-GAAIY-GDKV-FFGTLDASVVALNKNTG  137 (582)
T ss_dssp             TTEEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCC-CCEEE-TTEE-EEEETTTEEEEEESSSC
T ss_pred             CCEEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccC-CceEe-CCce-EEecCCCeEEEeccccc
Confidence            789999998899999996 57643 111 10        11223 56654 4466 77777778999996 57

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=84.53  E-value=5.1  Score=30.38  Aligned_cols=50  Identities=12%  Similarity=0.143  Sum_probs=26.0

Q ss_pred             cCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEE
Q 030700           59 KENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFT  110 (173)
Q Consensus        59 ~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~  110 (173)
                      -.|.++|+......+..+|. +|.+...-.........|  |.+..||+.||+
T Consensus       495 tagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~G~qYv~  545 (582)
T d1flga_         495 TAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP--ITWEQDGEQYLG  545 (582)
T ss_dssp             ETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEE
T ss_pred             EcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEEEE
Confidence            44456466544445666674 673333222222222233  677788987775

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=84.32  E-value=4.9  Score=30.44  Aligned_cols=49  Identities=8%  Similarity=0.108  Sum_probs=26.3

Q ss_pred             CcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEEEEe
Q 030700           61 NNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLYFTV  111 (173)
Q Consensus        61 g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~v~~  111 (173)
                      +.++|+......++.+|. +|.+...-...+.....|  |.+..||+.||+-
T Consensus       475 gglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P--~ty~~dGkqYi~v  524 (571)
T d2ad6a1         475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSP--MTYSFKGKQYIGS  524 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEEEEE
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecc--eEEEECCEEEEEE
Confidence            345476655555666774 674333322322222233  6656689988853

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=82.66  E-value=3.1  Score=30.08  Aligned_cols=61  Identities=10%  Similarity=-0.018  Sum_probs=36.4

Q ss_pred             ccEEEcCCCcE-EEEeCcCCcCcccceeeecccCCCceEEEEcCCCCeeEEeeccccCcceEEEccCCCEEEEEe
Q 030700           97 NDVIEASDGSL-YFTVSSTKFTPAEYYLDLVSGEPHGVLLKYDPSTNQTSLVLDGLYFANGVALSEDERFLVVCE  170 (173)
Q Consensus        97 ~~l~~~~dG~~-~v~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~p~gi~~~~dg~~lyv~~  170 (173)
                      -++.++|||+. .++-..  -           +...-.|..+|.++++...-.-......+++|++|++.+|.+.
T Consensus       128 ~~~~~Spd~~~la~s~d~--~-----------G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~  189 (430)
T d1qfma1         128 RGYAFSEDGEYFAYGLSA--S-----------GSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNA  189 (430)
T ss_dssp             EEEEECTTSSEEEEEEEE--T-----------TCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEE
T ss_pred             cceEecCCCCEEEEEecc--c-----------cCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEE
Confidence            45788899863 333211  0           1223478889999887532111112235799999999887654

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=81.49  E-value=5.9  Score=29.90  Aligned_cols=80  Identities=18%  Similarity=0.195  Sum_probs=37.6

Q ss_pred             CeEEEEcCCCcEEEeccccCccccceEEccCCcEEEEEeCCCeEEEEcc-CCcEEEEeccCCccccCCccEEEcCCCcEE
Q 030700           30 GWIKRMHPNGTWEDWHQVGSQSLLGLTTTKENNVIIVCDSQQGLLKVSE-EGVTVLVSQFNGSQLRFANDVIEASDGSLY  108 (173)
Q Consensus        30 ~~i~~~~~~g~~~~~~~~~~~p~~gl~~~~~g~l~~v~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~~l~~~~dG~~~  108 (173)
                      |.|..+|+......|.-....|.++=++.-.|.++|+......+..+|. +|.+...-.........|  |.+..||+.|
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P--~ty~~~GkQY  534 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP--STYMVDGRQY  534 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC--EEEEETTEEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC--EEEEECCEEE
Confidence            3566777543333332222222112223335556466554445677774 773332222222212233  5556689887


Q ss_pred             EEe
Q 030700          109 FTV  111 (173)
Q Consensus       109 v~~  111 (173)
                      |+-
T Consensus       535 v~v  537 (573)
T d1kb0a2         535 VSV  537 (573)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            753

>d2ebsa1 b.69.13.1 (A:4-430) Oligoxyloglucan reducing end-specific cellobiohydrolase {Yeast (Geotrichum sp. M128) [TaxId: 203496]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Oligoxyloglucan reducing end-specific cellobiohydrolase
family: Oligoxyloglucan reducing end-specific cellobiohydrolase
domain: Oligoxyloglucan reducing end-specific cellobiohydrolase
species: Yeast (Geotrichum sp. M128) [TaxId: 203496]

Probab=80.47  E-value=7.8  Score=27.55  Aligned_cols=107  Identities=11%  Similarity=0.132  Sum_probs=58.4

Q ss_pred             ecCCccCCcceEEEcCC--CCEEEEcCCCeEEEEcCCC-cEEEeccc-------cCccccceEEccCC-cEEEEEeCC--
Q 030700            4 LGEGIVNHPEDVSVDGN--GVLYTATGDGWIKRMHPNG-TWEDWHQV-------GSQSLLGLTTTKEN-NVIIVCDSQ--   70 (173)
Q Consensus         4 ~~~~~~~~p~~l~~~~~--g~l~~~~~~~~i~~~~~~g-~~~~~~~~-------~~~p~~gl~~~~~g-~l~~v~~~~--   70 (173)
                      +..+.-....+|+++|.  ..+|++...+.|+|-.-.| .++.+...       ..... .|++||.. +.+|++...  
T Consensus         6 ~~~~~gg~~~~i~~~P~~~~~~ya~~~~gGv~~S~dgG~tW~~~~~~~~~~~~~~~~~~-~iavdp~np~~vy~~tg~~~   84 (427)
T d2ebsa1           6 VAIGGGGYITGIVAHPKTKDLLYARTDIGGAYRWDAGTSKWIPLNDFIEAQDMNIMGTE-SIALDPNNPDRLYLAQGRYV   84 (427)
T ss_dssp             CCCCBCSCEEEEEECSSSTTCEEEEESSSCEEEEETTTTEEEESCTTCCGGGGGGCSEE-EEEEETTEEEEEEEEECSCT
T ss_pred             cCCCCCCcEEEEEECCCCCCEEEEEecCCCEEEEECCCCceEECCCCCCCCCcccccEe-EEEECCCCCCEEEEEecccc
Confidence            34444466789999993  4788877667798864333 46654321       12345 78888752 454876422  


Q ss_pred             ----CeEEEEccCCc--EEEEeccCC----ccccCCccEEEcCCC--cEEEEe
Q 030700           71 ----QGLLKVSEEGV--TVLVSQFNG----SQLRFANDVIEASDG--SLYFTV  111 (173)
Q Consensus        71 ----~~i~~~~~~g~--~~~~~~~~~----~~~~~~~~l~~~~dG--~~~v~~  111 (173)
                          .++++-...|.  +.+......    ........|+++|..  .+|++.
T Consensus        85 ~~~~~gi~~S~DgG~TW~~~~~~~~~~~~~~~~~~~~~i~v~P~~~~~v~~~~  137 (427)
T d2ebsa1          85 GDEWAAFYVSEDRGQSFTIYESPFPMGANDMGRNNGERLAVNPFNSNEVWMGT  137 (427)
T ss_dssp             TSSCCEEEEESSTTSEEEEEECSSCCCTTSTTTTSCCCEEECTTCTTCEEEEC
T ss_pred             CCcCccEEEeCCCCccceeecCCcccCccccCccceeEEEECCCccCcccccc
Confidence                23444334442  333222110    011234569999853  477763