Citrus Sinensis ID: 030727

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPSCGNGQLGSMPHLFEEKRSQE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHcccccccccEEEEEccccccccccccccccEEEcccccccccccccccccccccccccccccccEEccccccEEEEEEEcEEcccccccccccccEEEEEEccccccccccccccccccccccEEEEEEEEccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHHHHHHHHHHHccccccccEEEEEEcccccccccccHcccEEEEEcccccccccccccccHccccEEEEccccccEEccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccEEEEEEEccccccccHcccccc
Coil and Loop (DISEMBL)
mekidfmkngvlrlppgfrfhptdEELVVQYLKRKIfacplpasiipevdvcksdpwdlpgdvaqeRYFFStreakypngnrsnratgsgywkatgldkqiatsrgnqivGMKKTLVfyrgkpphgsrtdwIMHEYRLVtaanapqkknlpscgngqlgsmphlfeekrsqe
Flexible Loop (DISEMBL)
mekidfmkngvlrlppgfrfhpTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFStreakypngnrsnratgsgywkATGLDKQIatsrgnqivGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPSCGNGqlgsmphlfeekrsqe
Low Complexity Region (SEG)
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPSCGNGQLGSMPHLFEEKRSQE
Disordered region (IsUnstruct)
*****FMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTR***************SGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAA******************************
Disordered Region (DISOPRED)
***************PGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVT***************GQLGSMPHL*EEK****
Disordered Region (DISEMBL)
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPSCGNGQLGSMPHLFEEKRSQE
Disordered Region (DISPRO)
************RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPSCGNGQLGS************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNLPSCGNGQLGSMPHLFEEKRSQE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
A0SPJ6	396	NAC transcription factor	N/A	no	0.843	0.366	0.597	7e-44
Q8H4S4	425	NAC transcription factor	yes	no	0.860	0.348	0.585	9e-44
Q52QH4	318	NAC domain-containing pro	no	no	0.796	0.430	0.621	2e-43
D2SMN4	406	NAC transcription factor	N/A	no	0.802	0.339	0.611	3e-43
A0SPJ9	402	NAC transcription factor	N/A	no	0.843	0.360	0.590	3e-43
A2YMR0	425	NAC transcription factor	N/A	no	0.860	0.348	0.579	3e-43
O49255	268	NAC transcription factor	no	no	0.779	0.5	0.611	7e-43
A0SPJ4	405	NAC transcription factor	N/A	no	0.802	0.340	0.609	1e-42
A0SPJ8	406	NAC transcription factor	N/A	no	0.802	0.339	0.604	2e-42
Q8GY42	323	NAC transcription factor	no	no	0.773	0.411	0.619	3e-42

>sp|A0SPJ6|NAMB2_TRIDB NAC transcription factor NAM-B2 OS=Triticum durum GN=NAM-B2 PE=2 SV=1

 Score =  176 bits (446), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 89/149 (59%), Positives = 102/149 (68%), Gaps = 4/149 (2%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP       QE YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIITEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FS R+ KYPNG R NRA  SGYWKATG DK I A+  G + VG+KK LVFYRGKPP G +
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKKALVFYRGKPPKGLK 146

Query: 129 TDWIMHEYRLVTAANAPQKKNLPSCGNGQ 157
           T+WIMHEYRL  A+++      P    G 
Sbjct: 147 TNWIMHEYRLTDASSSATTSRPPPVTGGS 175

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene encoding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1.
Triticum durum (taxid: 4567)

>sp|Q8H4S4|NAC10_ORYSJ NAC transcription factor ONAC010 OS=Oryza sativa subsp. japonica GN=ONAC010 PE=2 SV=1

 Score =  176 bits (445), Expect = 9e-44,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 106/157 (67%), Gaps = 9/157 (5%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFF 70
           LPPGFRFHPTDEELVV YLK+K  + PLP +II EVD+ K DPWDLP       QE YFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWDLPEKANFGEQEWYFF 88

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGN-QIVGMKKTLVFYRGKPPHGSRT 129
           S R+ KYPNG R NRA  SGYWKATG DK I +S    + VG+KK LVFYRGKPP G +T
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMSSGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 130 DWIMHEYRLV-----TAANAPQKKNLPSCGNGQLGSM 161
           +WIMHEYRL       AA A  ++  P    G  G++
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRRPPPPITGGSKGAV 185

Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q52QH4|NAC68_ORYSJ NAC domain-containing protein 68 OS=Oryza sativa subsp. japonica GN=NAC68 PE=2 SV=1

 Score =  175 bits (443), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 87/140 (62%), Positives = 97/140 (69%), Gaps = 3/140 (2%)

Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERY 68
           L LPPGFRFHPTDEELVV YL RK+   PLP  II EVD+ K DPWDLP       +E Y
Sbjct: 19  LNLPPGFRFHPTDEELVVHYLCRKVARQPLPVPIIAEVDLYKLDPWDLPEKALFGRKEWY 78

Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FF+ R+ KYPNG+R NRA G GYWKATG DK +A     + VG+KK LVFY GK P G +
Sbjct: 79  FFTPRDRKYPNGSRPNRAAGRGYWKATGADKPVAPKGSARTVGIKKALVFYSGKAPRGVK 138

Query: 129 TDWIMHEYRLVTAANAPQKK 148
           TDWIMHEYRL  A  AP  K
Sbjct: 139 TDWIMHEYRLADADRAPGGK 158

Oryza sativa subsp. japonica (taxid: 39947)

>sp|D2SMN4|NAMB1_HORVS NAC transcription factor NAM-B1 OS=Hordeum vulgare subsp. spontaneum GN=NAM-B1 PE=4 SV=1

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/144 (61%), Positives = 99/144 (68%), Gaps = 6/144 (4%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
           LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP        E YFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQI---ATSRGNQIVGMKKTLVFYRGKPPHGS 127
           S R+ KYPNG R NRA  SGYWKATG DK I   AT  G + VG+KK LVFYRGKPP G 
Sbjct: 95  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 128 RTDWIMHEYRLVTAANAPQKKNLP 151
           +T+WIMHEYRL  A+      + P
Sbjct: 155 KTNWIMHEYRLTGASAGSTTTSRP 178

Transcription factor of the NAC family associated with the grain protein content (GPC). Sequences of the 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare subsp. spontaneum (taxid: 77009)

>sp|A0SPJ9|NAM2_HORVD NAC transcription factor NAM-2 OS=Hordeum vulgare var. distichum GN=NAM-2 PE=4 SV=1

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 101/149 (67%), Gaps = 4/149 (2%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP       QE YF
Sbjct: 27  ELPPGFRFHPTDEELVVHYLKKKAAKVPLPVTIIAEVDLYKFDPWELPEKATFGEQEWYF 86

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FS R+ KYPNG R NRA  SGYWKATG DK I A+  G + VG+K  LVFYRGKPP G +
Sbjct: 87  FSPRDRKYPNGARPNRAATSGYWKATGTDKPILASGCGREKVGVKXALVFYRGKPPKGLK 146

Query: 129 TDWIMHEYRLVTAANAPQKKNLPSCGNGQ 157
           T+WIMHEYRL  A+++      P    G 
Sbjct: 147 TNWIMHEYRLTDASSSAATSRPPPVTGGS 175

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|A2YMR0|NAC10_ORYSI NAC transcription factor ONAC010 OS=Oryza sativa subsp. indica GN=ONAC010 PE=3 SV=1

 Score =  174 bits (440), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 91/157 (57%), Positives = 106/157 (67%), Gaps = 9/157 (5%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFF 70
           LPPGFRFHPTDEELVV YLK+K  + PLP +II EVD+ K DPW+LP       QE YFF
Sbjct: 29  LPPGFRFHPTDEELVVHYLKKKAASVPLPVTIIAEVDLYKFDPWELPEKANFGEQEWYFF 88

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIVGMKKTLVFYRGKPPHGSRT 129
           S R+ KYPNG R NRA  SGYWKATG DK I A+    + VG+KK LVFYRGKPP G +T
Sbjct: 89  SPRDRKYPNGARPNRAATSGYWKATGTDKPIMASGSTREKVGVKKALVFYRGKPPKGVKT 148

Query: 130 DWIMHEYRLV-----TAANAPQKKNLPSCGNGQLGSM 161
           +WIMHEYRL       AA A  ++  P    G  G++
Sbjct: 149 NWIMHEYRLTDTSSSAAAVATTRQPPPPITGGSRGAV 185

Transcription factor of the NAC family associated with male fertility.

Oryza sativa subsp. indica (taxid: 39946)

>sp|O49255|NAC29_ARATH NAC transcription factor 29 OS=Arabidopsis thaliana GN=NAC029 PE=2 SV=1

 Score =  172 bits (437), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/139 (61%), Positives = 97/139 (69%), Gaps = 5/139 (3%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFF 70
           LPPGFRFHPTDEEL+V YL+ +  + P P SIIPEVD+ K DPW LP        E YFF
Sbjct: 9   LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
           S RE KYPNG R NRA  SGYWKATG DK I +   N  VG+KK LVFY+G+PP G +TD
Sbjct: 69  SPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSN--VGVKKALVFYKGRPPKGIKTD 126

Query: 131 WIMHEYRLVTAANAPQKKN 149
           WIMHEYRL  +  A  K+N
Sbjct: 127 WIMHEYRLHDSRKASTKRN 145

May function in the transition between active cell division and cell expansion.

Arabidopsis thaliana (taxid: 3702)

>sp|A0SPJ4|NAMB1_TRIDC NAC transcription factor NAM-B1 OS=Triticum dicoccoides GN=NAM-B1 PE=4 SV=1

 Score =  172 bits (435), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 89/146 (60%), Positives = 101/146 (69%), Gaps = 8/146 (5%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
           LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP       QE YFF
Sbjct: 34  LPPGFRFHPTDEELVVHYLKKKADKAPLPVNIIAEVDLYKFDPWELPEKATIGEQEWYFF 93

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQI-ATSRGNQIV----GMKKTLVFYRGKPPH 125
           S R+ KYPNG R NRA  SGYWKATG DK I A+  G  +V    G+KK LVFYRGKPP 
Sbjct: 94  SPRDRKYPNGARPNRAATSGYWKATGTDKPILASGTGCGLVREKLGVKKALVFYRGKPPK 153

Query: 126 GSRTDWIMHEYRLVTAANAPQKKNLP 151
           G +T+WIMHEYRL  A+ +    N P
Sbjct: 154 GLKTNWIMHEYRLTDASGSTTATNRP 179

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) and the hexaploid wheat (T.aestivum) carry a one bp insertion generating a non-functional allele of this gene. They have a delayed senescence and a lower grain protein, zinc and iron content (PubMed:17124321).

Triticum dicoccoides (taxid: 85692)

>sp|A0SPJ8|NAM1_HORVD NAC transcription factor NAM-1 OS=Hordeum vulgare var. distichum GN=NAM-1 PE=4 SV=1

 Score =  171 bits (433), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 87/144 (60%), Positives = 98/144 (68%), Gaps = 6/144 (4%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
           LPPGFRFHPTDEELVV YLK+K    PLP +II EVD+ K DPW+LP        E YFF
Sbjct: 35  LPPGFRFHPTDEELVVHYLKKKAAKAPLPVTIIAEVDLYKFDPWELPEKATFGEHEWYFF 94

Query: 71  STREAKYPNGNRSNRATGSGYWKATGLDKQI---ATSRGNQIVGMKKTLVFYRGKPPHGS 127
           S R+ KY NG R NRA  SGYWKATG DK I   AT  G + VG+KK LVFYRGKPP G 
Sbjct: 95  SPRDRKYANGARPNRAATSGYWKATGTDKPILASATGCGREKVGVKKALVFYRGKPPRGL 154

Query: 128 RTDWIMHEYRLVTAANAPQKKNLP 151
           +T+WIMHEYRL  A+      + P
Sbjct: 155 KTNWIMHEYRLTGASAGSTTTSRP 178

Transcription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. Sequences of 11 European varieties of H.vulgare tested belongs to the same haplotype while the sequence found in H.spontaneum, an ancestor of the cultivated H.vulgare which has a higher GPC, belongs to an other haplotype.

Hordeum vulgare var. distichum (taxid: 112509)

>sp|Q8GY42|NAC25_ARATH NAC transcription factor 25 OS=Arabidopsis thaliana GN=NAC025 PE=2 SV=1

 Score =  171 bits (432), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 99/142 (69%), Gaps = 9/142 (6%)

Query: 13  RLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYF 69
            LPPGFRFHPTDEELVV YLK+K  + PLP SII E+D+ K DPW+LP   +    E YF
Sbjct: 15  HLPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYF 74

Query: 70  FSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRT 129
           FS R+ KYPNG R NRA  SGYWKATG DK I T   ++ VG+KK LVFY GKPP G +T
Sbjct: 75  FSPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK-VGVKKALVFYGGKPPKGIKT 133

Query: 130 DWIMHEYRLV-----TAANAPQ 146
           DWIMHEYRL      TAA  P 
Sbjct: 134 DWIMHEYRLTDGNLSTAAKPPD 155

Transcription factor of the NAC family. May be associated with anther development and pollen production.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
337733646	249	NAC domain transcription factor [Citrus	0.872	0.602	0.993	4e-85
255543138	254	NAC domain-containing protein, putative	1.0	0.677	0.764	8e-76
225425172	251	PREDICTED: NAC domain-containing protein	0.866	0.593	0.859	1e-74
224053533	257	NAC domain protein, IPR003441 [Populus t	0.866	0.579	0.856	1e-74
224075517	255	NAC domain protein, IPR003441 [Populus t	0.866	0.584	0.849	5e-74
351724343	229	NAC domain protein [Glycine max] gi|1879	0.843	0.633	0.869	4e-73
302399017	255	NAC domain class transcription factor [M	0.866	0.584	0.830	2e-72
255629857	229	unknown [Glycine max]	0.843	0.633	0.856	3e-72
449445576	257	PREDICTED: NAC transcription factor ONAC	0.889	0.595	0.803	5e-72
443682294	255	NAC protein 7 [Gossypium hirsutum]	0.866	0.584	0.834	1e-71

>gi|337733646|gb|AEI72272.1| NAC domain transcription factor [Citrus trifoliata]

 Score =  318 bits (815), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 149/150 (99%), Positives = 149/150 (99%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR
Sbjct: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQKKNL 150
           GKPPHGSRTDWIMHEYRLVTAANAPQKKN 
Sbjct: 121 GKPPHGSRTDWIMHEYRLVTAANAPQKKNF 150

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543138|ref|XP_002512632.1| NAC domain-containing protein, putative [Ricinus communis] gi|223548593|gb|EEF50084.1| NAC domain-containing protein, putative [Ricinus communis]

 Score =  288 bits (736), Expect = 8e-76,   Method: Compositional matrix adjust.
 Identities = 136/178 (76%), Positives = 156/178 (87%), Gaps = 6/178 (3%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           ME+++F+KNGVLRLPPGFRFHPTDEELVVQYLKRK+F+CPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MERLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DK+I TS+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATSSGYWKATGIDKEIVTSKGNQLVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVT----AANAPQKKNLPSCGNGQLGS--MPHLFEEKRSQE 172
           GKPPHG+RTDWIMHEYRLV+    A N+PQKKN      G + +  +  +F +KRS +
Sbjct: 121 GKPPHGTRTDWIMHEYRLVSPQTAACNSPQKKNPIQSPLGAMDNWVLCRIFLKKRSNK 178

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225425172|ref|XP_002264588.1| PREDICTED: NAC domain-containing protein 29 isoform 1 [Vitis vinifera] gi|296088719|emb|CBI38169.3| unnamed protein product [Vitis vinifera]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 128/149 (85%), Positives = 140/149 (93%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK++F+KNGVLRLPPGFRFHPTDEELVVQYLKRK ++CPLPASIIPEVDVCK+DPWDLP
Sbjct: 1   MEKLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKAYSCPLPASIIPEVDVCKADPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DKQI  S+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATVSGYWKATGIDKQIVASKGNQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQKKN 149
           GKPPHGSRTDWIMHEYRLV A   PQ+K+
Sbjct: 121 GKPPHGSRTDWIMHEYRLVGAETTPQRKS 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053533|ref|XP_002297860.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222845118|gb|EEE82665.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  284 bits (726), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 131/153 (85%), Positives = 141/153 (92%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK+ F+KNGVLRLPPGFRFHPTDEELVVQYLKRK+FACPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKLSFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRATGSGYWKATG+DKQI TS+G+Q+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGHQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRL----VTAANAPQKKN 149
           GKPPHG+RTDWIMHEYRL     TA N  + KN
Sbjct: 121 GKPPHGTRTDWIMHEYRLASTETTACNTLKNKN 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224075517|ref|XP_002304662.1| NAC domain protein, IPR003441 [Populus trichocarpa] gi|222842094|gb|EEE79641.1| NAC domain protein, IPR003441 [Populus trichocarpa]

 Score =  281 bits (720), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 130/153 (84%), Positives = 140/153 (91%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK++F+KNG +RLPPGFRFHPTDEELVVQYLKRK+FACPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKLNFVKNGAVRLPPGFRFHPTDEELVVQYLKRKVFACPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRATGSGYWKATG+DKQI TS+GNQ VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKQIVTSKGNQAVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVT----AANAPQKKN 149
           GKPPHG+RTDWIMHEYRL +    A NA   KN
Sbjct: 121 GKPPHGTRTDWIMHEYRLASTETAACNALLNKN 153

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351724343|ref|NP_001238078.1| NAC domain protein [Glycine max] gi|187940283|gb|ACD39372.1| NAC domain protein [Glycine max]

 Score =  278 bits (712), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 127/146 (86%), Positives = 136/146 (93%), Gaps = 1/146 (0%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK+ F+KNG LRLPPGFRFHPTDEELV+QYLKRK+F+CPLPASIIPEVDVCKSDPWDLP
Sbjct: 1   MEKVSFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPASIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFST+EAKYPNGNRSNRAT SGYWKATGLDKQI TS+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKATGLDKQIVTSKGNQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQ 146
           GKPPHGSRTDWIMHEYRL    NA Q
Sbjct: 121 GKPPHGSRTDWIMHEYRL-NILNASQ 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302399017|gb|ADL36803.1| NAC domain class transcription factor [Malus x domestica]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 127/153 (83%), Positives = 139/153 (90%), Gaps = 4/153 (2%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           ME+I+F+KNGVLRLPPGFRFHPTDEELV+QYL+RK+++CPLPASIIPEVDVCK+DPWDLP
Sbjct: 1   MERINFVKNGVLRLPPGFRFHPTDEELVLQYLRRKVYSCPLPASIIPEVDVCKADPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD AQERYFFSTREAKYPNGNRSNRAT SGYWKATGLDKQI T RG Q+VGMKKTLVFYR
Sbjct: 61  GDCAQERYFFSTREAKYPNGNRSNRATSSGYWKATGLDKQIVTCRGGQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAAN----APQKKN 149
           GKPPHG+RTDWIMHEYR V   N    AP +KN
Sbjct: 121 GKPPHGTRTDWIMHEYRFVLPENPASIAPPEKN 153

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255629857|gb|ACU15279.1| unknown [Glycine max]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 125/146 (85%), Positives = 135/146 (92%), Gaps = 1/146 (0%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK+ F+KNG LRLPPGFRFHPTDEELV+QYLKRK+F+CPLP SIIPEVDVCKSDPWDLP
Sbjct: 1   MEKVSFVKNGELRLPPGFRFHPTDEELVLQYLKRKVFSCPLPTSIIPEVDVCKSDPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFST+EAKYPNGNRSNRAT SGYWKA+GLDKQI TS+GNQ+VGMKKTLVFYR
Sbjct: 61  GDLEQERYFFSTKEAKYPNGNRSNRATNSGYWKASGLDKQIVTSKGNQVVGMKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVTAANAPQ 146
           GKPPHGSRTDWIMHEYRL    NA Q
Sbjct: 121 GKPPHGSRTDWIMHEYRL-NILNASQ 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449445576|ref|XP_004140548.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus] gi|449533897|ref|XP_004173907.1| PREDICTED: NAC transcription factor ONAC010-like [Cucumis sativus]

 Score =  275 bits (703), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 127/158 (80%), Positives = 144/158 (91%), Gaps = 5/158 (3%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           M+K++F+KNGVLRLPPGFRFHPTDEELVVQYLKRK+F+CPLPASIIPEV+VCK+DPWDLP
Sbjct: 1   MDKLNFVKNGVLRLPPGFRFHPTDEELVVQYLKRKVFSCPLPASIIPEVEVCKADPWDLP 60

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           G++ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DKQI TS+GNQ+VG+KKTLVFYR
Sbjct: 61  GNMEQERYFFSTREAKYPNGNRSNRATTSGYWKATGIDKQIVTSKGNQVVGLKKTLVFYR 120

Query: 121 GKPPHGSRTDWIMHEYRLVT----AANAPQKK-NLPSC 153
           GKPPHGSRTDWIMHEYRL +      NA Q+K +  SC
Sbjct: 121 GKPPHGSRTDWIMHEYRLASPPTVCLNASQEKSSFQSC 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443682294|gb|AGC97437.1| NAC protein 7 [Gossypium hirsutum]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 126/151 (83%), Positives = 139/151 (92%), Gaps = 2/151 (1%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           MEK++F+KNGVLRLPPGFRFHPTDEELVVQYL+RK+ + PLPASIIPEVDVCK+DPWDLP
Sbjct: 2   MEKLNFVKNGVLRLPPGFRFHPTDEELVVQYLRRKVLSWPLPASIIPEVDVCKADPWDLP 61

Query: 61  GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
           GD+ QERYFFSTREAKYPNGNRSNRAT SGYWKATG+DKQ+ +  GNQ+VGMKKTLVFYR
Sbjct: 62  GDLEQERYFFSTREAKYPNGNRSNRATLSGYWKATGIDKQVVSCSGNQVVGMKKTLVFYR 121

Query: 121 GKPPHGSRTDWIMHEYRLVTA--ANAPQKKN 149
           GKPP G+RTDWIMHEYRLVTA   NAP KKN
Sbjct: 122 GKPPQGTRTDWIMHEYRLVTADTCNAPHKKN 152

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2179877	252	NAC083 "NAC domain containing	0.802	0.547	0.833	1.1e-64
TAIR|locus:2051053	268	NAC041 "NAC domain containing	0.796	0.511	0.778	4e-58
TAIR|locus:2090186	364	NAC2 "NAC domain containing pr	0.813	0.384	0.630	3.4e-45
TAIR|locus:2095908	359	NAC047 "NAC domain containing	0.901	0.431	0.533	2.8e-43
TAIR|locus:2204685	253	NAC032 "NAC domain containing	0.808	0.549	0.594	3.2e-42
TAIR|locus:2008490	323	NAC025 "NAC domain containing	0.761	0.405	0.628	1.7e-41
TAIR|locus:2007166	268	NAP "NAC-like, activated by AP	0.779	0.5	0.611	1.7e-41
TAIR|locus:2011516	320	NAM "NO APICAL MERISTEM" [Arab	0.726	0.390	0.630	5.9e-41
TAIR|locus:2009729	631	NAC028 "NAC domain containing	0.715	0.194	0.623	9.5e-41
TAIR|locus:2020123	301	NAC020 "NAC domain containing	0.808	0.461	0.547	6.8e-40

TAIR|locus:2179877 NAC083 "NAC domain containing protein 83" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 115/138 (83%), Positives = 130/138 (94%)

Query:     1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
             M+ +  +KNGVLRLPPGFRFHPTDEELVVQYLKRK+ + PLPASIIPE DVC++DPWDLP
Sbjct:     1 MDNVKLVKNGVLRLPPGFRFHPTDEELVVQYLKRKVCSSPLPASIIPEFDVCRADPWDLP 60

Query:    61 GDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYR 120
             G++ +ERYFFSTREAKYPNGNRSNRATGSGYWKATG+DK++ TSRGNQIVG+KKTLVFY+
Sbjct:    61 GNLEKERYFFSTREAKYPNGNRSNRATGSGYWKATGIDKRVVTSRGNQIVGLKKTLVFYK 120

Query:   121 GKPPHGSRTDWIMHEYRL 138
             GKPPHGSRTDWIMHEYRL
Sbjct:   121 GKPPHGSRTDWIMHEYRL 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010089 "xylem development" evidence=RCA;IMP

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0010150 "leaf senescence" evidence=IMP

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2051053 NAC041 "NAC domain containing protein 41" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 109/140 (77%), Positives = 122/140 (87%)

Query:     1 MEKIDFMKN-GVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDL 59
             MEK   +KN GVLRLPPGFRFHPTDEELVVQYL+RK+   PLPAS+IPE DVCKSDPWDL
Sbjct:     1 MEKRSSIKNRGVLRLPPGFRFHPTDEELVVQYLRRKVTGLPLPASVIPETDVCKSDPWDL 60

Query:    60 PGDVAQERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFY 119
             PGD   E YFFSTREAKYPNGNRSNR+TGSGYWKATGLDKQI   +   +VGMKKTLVFY
Sbjct:    61 PGDCESEMYFFSTREAKYPNGNRSNRSTGSGYWKATGLDKQIGKKK--LVVGMKKTLVFY 118

Query:   120 RGKPPHGSRTDWIMHEYRLV 139
             +GKPP+G+RT+W++HEYRLV
Sbjct:   119 KGKPPNGTRTNWVLHEYRLV 138

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2090186 NAC2 "NAC domain containing protein 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
 Identities = 92/146 (63%), Positives = 104/146 (71%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEELVV YLKRK  + PLP +II EVD+ K DPW+LP   +   QE YFF
Sbjct:    17 LPPGFRFHPTDEELVVHYLKRKAASAPLPVAIIAEVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
             S R+ KYPNG R NRA  SGYWKATG DK +  S GNQ VG+KK LVFY GKPP G ++D
Sbjct:    77 SPRDRKYPNGARPNRAATSGYWKATGTDKPVLASDGNQKVGVKKALVFYSGKPPKGVKSD 136

Query:   131 WIMHEYRLVTAANAPQKKNLPSCGNG 156
             WIMHEYRL+   N P  +  P C  G
Sbjct:   137 WIMHEYRLIE--NKPNNRP-PGCDFG 159

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;NAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2095908 NAC047 "NAC domain containing protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 457 (165.9 bits), Expect = 2.8e-43, P = 2.8e-43
 Identities = 88/165 (53%), Positives = 115/165 (69%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEEL++ YL++K+ + P+P SII +VD+ KSDPWDLP       +E YFF
Sbjct:    10 LPPGFRFHPTDEELILHYLRKKVSSSPVPLSIIADVDIYKSDPWDLPAKAPFGEKEWYFF 69

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRG---NQIVGMKKTLVFYRGKPPHGS 127
             S R+ KYPNG R NRA  SGYWKATG DK IA   G   ++ +G+KK LVFYRGKPP G 
Sbjct:    70 SPRDRKYPNGARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPKGV 129

Query:   128 RTDWIMHEYRLVTAANAPQKKNLPSCGNGQLGSMPHLFEEKRSQE 172
             +T+WIMHEYRL  + + P++ N    G  ++ +    F ++ S+E
Sbjct:   130 KTNWIMHEYRLADSLS-PKRINSSRSGGSEVNNN---FGDRNSKE 170

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

TAIR|locus:2204685 NAC032 "NAC domain containing protein 32" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 88/148 (59%), Positives = 108/148 (72%)

Query:     7 MKNGV-LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA- 64
             MK+G  L+ PPGFRFHPTDEELV+ YL RK  + P+PA II E+D+ + DPWDLP D+A 
Sbjct:     2 MKSGADLQFPPGFRFHPTDEELVLMYLCRKCASQPIPAPIITELDLYRYDPWDLP-DMAL 60

Query:    65 ---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRG 121
                +E YFFS R+ KYPNG+R NRA G+GYWKATG DK I   +    VG+KK LVFY G
Sbjct:    61 YGEKEWYFFSPRDRKYPNGSRPNRAAGTGYWKATGADKPIGRPKP---VGIKKALVFYSG 117

Query:   122 KPPHGSRTDWIMHEYRLVTAANAPQKKN 149
             KPP+G +T+WIMHEYRL     + +KKN
Sbjct:   118 KPPNGEKTNWIMHEYRLADVDRSVRKKN 145

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

TAIR|locus:2008490 NAC025 "NAC domain containing protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 88/140 (62%), Positives = 99/140 (70%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEELVV YLK+K  + PLP SII E+D+ K DPW+LP   +    E YFF
Sbjct:    16 LPPGFRFHPTDEELVVHYLKKKADSVPLPVSIIAEIDLYKFDPWELPSKASFGEHEWYFF 75

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
             S R+ KYPNG R NRA  SGYWKATG DK I T   ++ VG+KK LVFY GKPP G +TD
Sbjct:    76 SPRDRKYPNGVRPNRAATSGYWKATGTDKPIFTCNSHK-VGVKKALVFYGGKPPKGIKTD 134

Query:   131 WIMHEYRLV-----TAANAP 145
             WIMHEYRL      TAA  P
Sbjct:   135 WIMHEYRLTDGNLSTAAKPP 154

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2007166 NAP "NAC-like, activated by AP3/PI" [Arabidopsis thaliana (taxid:3702)]

 Score = 440 (159.9 bits), Expect = 1.7e-41, P = 1.7e-41
 Identities = 85/139 (61%), Positives = 97/139 (69%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEEL+V YL+ +  + P P SIIPEVD+ K DPW LP        E YFF
Sbjct:     9 LPPGFRFHPTDEELIVYYLRNQTMSKPCPVSIIPEVDIYKFDPWQLPEKTEFGENEWYFF 68

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTD 130
             S RE KYPNG R NRA  SGYWKATG DK I +   N  VG+KK LVFY+G+PP G +TD
Sbjct:    69 SPRERKYPNGVRPNRAAVSGYWKATGTDKAIHSGSSN--VGVKKALVFYKGRPPKGIKTD 126

Query:   131 WIMHEYRLVTAANAPQKKN 149
             WIMHEYRL  +  A  K+N
Sbjct:   127 WIMHEYRLHDSRKASTKRN 145

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0010150 "leaf senescence" evidence=IMP

GO:0009617 "response to bacterium" evidence=RCA

GO:0045087 "innate immune response" evidence=RCA

GO:0009825 "multidimensional cell growth" evidence=IMP

GO:0009908 "flower development" evidence=IMP

TAIR|locus:2011516 NAM "NO APICAL MERISTEM" [Arabidopsis thaliana (taxid:3702)]

 Score = 435 (158.2 bits), Expect = 5.9e-41, P = 5.9e-41
 Identities = 82/130 (63%), Positives = 98/130 (75%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA---QERYFF 70
             LPPGFRFHPTDEELV+ YLKRK  + PLP +II +VD+ K DPW+LP   +   QE YFF
Sbjct:    17 LPPGFRFHPTDEELVIHYLKRKADSVPLPVAIIADVDLYKFDPWELPAKASFGEQEWYFF 76

Query:    71 STREAKYPNGNRSNRATGSGYWKATGLDKQIATSRG--NQIVGMKKTLVFYRGKPPHGSR 128
             S R+ KYPNG R NRA  SGYWKATG DK + ++ G  ++ VG+KK LVFY GKPP G +
Sbjct:    77 SPRDRKYPNGARPNRAATSGYWKATGTDKPVISTGGGGSKKVGVKKALVFYSGKPPKGVK 136

Query:   129 TDWIMHEYRL 138
             +DWIMHEYRL
Sbjct:   137 SDWIMHEYRL 146

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA

TAIR|locus:2009729 NAC028 "NAC domain containing protein 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 9.5e-41, P = 9.5e-41
 Identities = 81/130 (62%), Positives = 101/130 (77%)

Query:    14 LPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVAQ-----ERY 68
             +PPGFRFHPTDEELV+ YLKRKI    +   IIPE+D+ K +PWDLPG         E +
Sbjct:     6 MPPGFRFHPTDEELVIYYLKRKINGRTIELEIIPEIDLYKCEPWDLPGKSLLPSKDLEWF 65

Query:    69 FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
             FFS R+ KYPNG+R+NRAT +GYWKATG D+++ TS  +++VG KKTLV+YRG+ PHGSR
Sbjct:    66 FFSPRDRKYPNGSRTNRATKAGYWKATGKDRKV-TSH-SRMVGTKKTLVYYRGRAPHGSR 123

Query:   129 TDWIMHEYRL 138
             TDW+MHEYRL
Sbjct:   124 TDWVMHEYRL 133

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

TAIR|locus:2020123 NAC020 "NAC domain containing protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 81/148 (54%), Positives = 105/148 (70%)

Query:    12 LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP------GDVAQ 65
             + LPPGFRFHPTDEELV  YL RK+    +   IIPEVD+ K +PWDLP      G+   
Sbjct:     4 MSLPPGFRFHPTDEELVAYYLDRKVNGQAIELEIIPEVDLYKCEPWDLPEKSFLPGN-DM 62

Query:    66 ERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPH 125
             E YF+STR+ KYPNG+R+NRAT +GYWKATG D+ + + +    +GMKKTLV+YRG+ PH
Sbjct:    63 EWYFYSTRDKKYPNGSRTNRATRAGYWKATGKDRTVESKKMK--MGMKKTLVYYRGRAPH 120

Query:   126 GSRTDWIMHEYRLVTAANAPQKKNLPSC 153
             G RT+W+MHEYRL  A ++  K++   C
Sbjct:   121 GLRTNWVMHEYRLTHAPSSSLKESYALC 148

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00006968001 SubName- Full=Chromosome chr1 scaffold_180, whole genome shotgun sequence; (251 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam02365	130	pfam02365, NAM, No apical meristem (NAM) protein	2e-77

>gnl|CDD|216997 pfam02365, NAM, No apical meristem (NAM) protein

 Score =  226 bits (578), Expect = 2e-77
 Identities = 87/130 (66%), Positives = 103/130 (79%), Gaps = 6/130 (4%)

Query: 14  LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLPGDVAQ----ERY 68
           LPPGFRFHPTDEELVV YLKRK+   PLP   +IPEVD+ K +PWDLP   A+    E Y
Sbjct: 1   LPPGFRFHPTDEELVVYYLKRKVLGKPLPLLDVIPEVDIYKFEPWDLPDGKAKGGDREWY 60

Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R+NRATGSGYWKATG DK +  S+G ++VGMKKTLVFY+G+ P G +
Sbjct: 61  FFSPRDRKYPNGSRTNRATGSGYWKATGKDKPV-LSKGGEVVGMKKTLVFYKGRAPKGEK 119

Query: 129 TDWIMHEYRL 138
           TDW+MHEYRL
Sbjct: 120 TDWVMHEYRL 129

This is a family of no apical meristem (NAM) proteins these are plant development proteins. Mutations in NAM result in the failure to develop a shoot apical meristem in petunia embryos. NAM is indicated as having a role in determining positions of meristems and primordial. One member of this family NAP (NAC-like, activated by AP3/PI) is encoded by the target genes of the AP3/PI transcriptional activators and functions in the transition between growth by cell division and cell expansion in stamens and petals. Length = 130

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF02365	129	NAM: No apical meristem (NAM) protein; InterPro: I	100.0

>PF02365 NAM: No apical meristem (NAM) protein; InterPro: IPR003441 The NAC domain (for Petunia hybrida (Petunia) NAM and for Arabidopsis ATAF1, ATAF2, and CUC2) is an N-terminal module of ~160 amino acids, which is found in proteins of the NAC family of plant-specific transcriptional regulators (no apical meristem (NAM) proteins) []

Probab=100.00  E-value=1.3e-46  Score=278.57  Aligned_cols=125  Identities=57%  Similarity=1.143  Sum_probs=95.1

Q ss_pred             CCCCeEECCChHHHHHHHHHHhHhCCCCCC-cceeccCCCCCCCCCCCc---CCCcceEEeecccccCCCCCCCcccCCc
Q 030727           14 LPPGFRFHPTDEELVVQYLKRKIFACPLPA-SIIPEVDVCKSDPWDLPG---DVAQERYFFSTREAKYPNGNRSNRATGS   89 (172)
Q Consensus        14 lp~G~rF~PTDeELi~~yL~~k~~g~~lp~-~~I~~~Dvy~~~P~~Lp~---~~~~~~yFF~~~~~~~~~g~r~~R~~~~   89 (172)
                      |||||||+|||+|||.+||++|+.|.++|. ++|+++|||++|||+|+.   ..+++||||+++++++.++.|.+|++++
T Consensus         1 LP~G~rF~PtD~ELi~~yL~~k~~g~~~~~~~~i~~~Diy~~~P~~L~~~~~~~~~~~yFF~~~~~~~~~~~r~~R~~~~   80 (129)
T PF02365_consen    1 LPPGFRFRPTDEELINHYLRPKILGEPLPCEDVIHDVDIYSAHPWELPAKFKGGDEEWYFFSPRKKKYPNGGRPNRVTGG   80 (129)
T ss_dssp             --TTEEE---HHHHHHCTHHHHHTT-HHCS-CHSEE--GGGS-GGGCHHHSSS-SSEEEEEEE----------S-EEETT
T ss_pred             CCCceEecCChHHHHHHHHHHHhcCCCCCcccceeecccCccChHHhhhhccCCCceEEEEEecccccCCcccccccccc
Confidence            899999999999999999999999999888 799999999999999993   3357999999999999999999999999


Q ss_pred             ceeeeeCCCceEEeCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeC
Q 030727           90 GYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLV  139 (172)
Q Consensus        90 G~Wk~~g~~k~i~~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~l~  139 (172)
                      |+||++|+.++|.+. +|.+||+|++|+|+.++.+++.+|+|+||||+|.
T Consensus        81 G~Wk~~g~~~~i~~~-~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~L~  129 (129)
T PF02365_consen   81 GYWKSTGKEKPIKDP-GGKVIGFKKTLVFYSGKSPNGKKTGWVMHEYSLE  129 (129)
T ss_dssp             EEEEEECEEEEEEE--TTCEEEEEEEEEEEESSTTS-EEEEEEEEEEEE-
T ss_pred             eEEeecccccccccc-cceeeeeEEEEEEEeccCCCCCcCCeEEEEEEeC
Confidence            999999999999874 8899999999999988778889999999999984

NAC proteins are involved in developmental processes, including formation of the shoot apical meristem, floral organs and lateral shoots, as well as in plant hormonal control and defence. The NAC domain is accompanied by diverse C-terminal transcriptional activation domains. The NAC domain has been shown to be a DNA-binding domain (DBD) and a dimerization domain [,]. The NAC domain can be subdivided into five subdomains (A-E). Each subdomain is distinguishable by blocks of heterogeneous amino acids or gaps. While the NAC domains were rich in basic amino acids (R, K and H) as a whole, the distribution of positive and negative amino acids in each subdomain were unequal. Subdomains C and D are rich in basic amino acids but poor in acidic amino acids, while subdomain B contains a high proportion of acidic amino acids. Putative nuclear localization signals (NLS) have been detected in subdomains C and D []. The DBD is contained within a 60 amino acid region located within subdomains D and E []. The overall structure of the NAC domain monomer consists of a very twisted antiparallel beta-sheet, which packs against an N-terminal alpha-helix on one side and one shorter helix on the other side surrounded by a few helical elements. The structure suggests that the NAC domain mediates dimerization through conserved interactions including a salt bridge, and DNA binding through the NAC dimer face rich in positive charges [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1UT4_A 3SWM_B 4DUL_B 3SWP_D 1UT7_B 3ULX_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
3ulx_A	174	Crystal Structural Of The Conserved Domain Of Rice		3e-39
3swm_A	174	The Nac Domain Of Anac019 In Complex With Dna, Gold		8e-39
1ut4_A	171	Structure Of The Conserved Domain Of Anac, A Member		8e-39

>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice Stress-Responsive Nac1 Length = 174

Iteration: 1
 Score =  157 bits (397), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 82/130 (63%), Positives = 94/130 (72%), Gaps = 5/130 (3%)
Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
           L LPPGFRFHPTD+ELV  YL RK     LP  II EVD+ K DPWDLP      A+E Y
Sbjct: 13  LNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWY 72
Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FF+ R+ KYPNG+R NRA G+GYWKATG DK +A  RG + +G+KK LVFY GK P G +
Sbjct: 73  FFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA-PRG-RTLGIKKALVFYAGKAPRGVK 130
Query: 129 TDWIMHEYRL 138
           TDWIMHEYRL
Sbjct: 131 TDWIMHEYRL 140

>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold Derivative Length = 174

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
           L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP       +E Y
Sbjct: 18  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 77
Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R NR  GSGYWKATG DK I+T    Q VG+KK LVFY GK P G++
Sbjct: 78  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTK 135
Query: 129 TDWIMHEYRLV 139
           T+WIMHEYRL+
Sbjct: 136 TNWIMHEYRLI 146

>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The Nac Family Of Transcription Factors Length = 171

Iteration: 1
 Score =  155 bits (393), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 78/131 (59%), Positives = 92/131 (70%), Gaps = 5/131 (3%)
Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERY 68
           L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP       +E Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74
Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R NR  GSGYWKATG DK I+T    Q VG+KK LVFY GK P G++
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIISTE--GQRVGIKKALVFYIGKAPKGTK 132
Query: 129 TDWIMHEYRLV 139
           T+WIMHEYRL+
Sbjct: 133 TNWIMHEYRLI 143

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	6e-86
1ut7_A	171	No apical meristem protein; transcription regulati	2e-85

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} Length = 174

 Score =  249 bits (637), Expect = 6e-86
 Identities = 82/151 (54%), Positives = 95/151 (62%), Gaps = 5/151 (3%)

Query: 5   DFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDVA 64
           +      L LPPGFRFHPTD+ELV  YL RK     LP  II EVD+ K DPWDLP    
Sbjct: 6   ERDAEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERAL 65

Query: 65  ---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRG 121
              +E YFF+ R+ KYPNG+R NRA G+GYWKATG DK +A     + +G+KK LVFY G
Sbjct: 66  FGAREWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAG 123

Query: 122 KPPHGSRTDWIMHEYRLVTAANAPQKKNLPS 152
           K P G +TDWIMHEYRL  A  A       S
Sbjct: 124 KAPRGVKTDWIMHEYRLADAGRAAAGAKKGS 154

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A Length = 171

 Score =  247 bits (632), Expect = 2e-85
 Identities = 80/153 (52%), Positives = 95/153 (62%), Gaps = 5/153 (3%)

Query: 1   MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLP 60
           M   +      L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP
Sbjct: 4   MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLP 63

Query: 61  GDVA---QERYFFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLV 117
                  +E YFFS R+ KYPNG+R NR  GSGYWKATG DK I  S   Q VG+KK LV
Sbjct: 64  NKALFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALV 121

Query: 118 FYRGKPPHGSRTDWIMHEYRLVTAANAPQKKNL 150
           FY GK P G++T+WIMHEYRL+  +       L
Sbjct: 122 FYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKL 154

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1ut7_A	171	No apical meristem protein; transcription regulati	100.0
3ulx_A	174	Stress-induced transcription factor NAC1; NAC fami	100.0

>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A

Probab=100.00  E-value=3.9e-58  Score=353.59  Aligned_cols=158  Identities=51%  Similarity=0.869  Sum_probs=132.7

Q ss_pred             CCcccccCCCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeccCCCCCCCCCCCcCC---CcceEEeecccccC
Q 030727            1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY   77 (172)
Q Consensus         1 m~~~~~~~~~~~~lp~G~rF~PTDeELi~~yL~~k~~g~~lp~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~~~   77 (172)
                      |+..+.....++.|||||||+|||||||.+||++|+.|.++|..+|+++|||.+|||+||+..   +.+||||+++.+++
T Consensus         4 m~~~~~~~~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~g~~ewyFFs~r~~k~   83 (171)
T 1ut7_A            4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (171)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             cccccCCcccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhcCCccEEEEecccccc
Confidence            777776667789999999999999999999999999999999999999999999999999764   57999999999999


Q ss_pred             CCCCCCcccCCcceeeeeCCCceEEeCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCC---CCCCCeeEEE
Q 030727           78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA---PQKKNLPSCG  154 (172)
Q Consensus        78 ~~g~r~~R~~~~G~Wk~~g~~k~i~~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~l~~~~~~---~~~~~~VLCk  154 (172)
                      ++|.|.+|++++|+||++|++++|.+  ++.+||+|++|+||.++.+++.+|+|+||||+|.+....   ...++|||||
T Consensus        84 ~~g~R~~R~t~~G~Wk~tG~~k~I~~--~~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~~~~~~~~~~VlCr  161 (171)
T 1ut7_A           84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCR  161 (171)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEE
T ss_pred             CCCCcccccCCCCEEeccCCCceEEe--cCcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccccCcccCCCEEEEE
Confidence            99999999999999999999999985  568999999999999999999999999999999987532   3468999999


Q ss_pred             EEEcCC
Q 030727          155 NGQLGS  160 (172)
Q Consensus       155 v~~~~~  160 (172)
                      ||+|..
T Consensus       162 v~~k~~  167 (171)
T 1ut7_A          162 IYKKQS  167 (171)
T ss_dssp             EEECC-
T ss_pred             EEEcCC
Confidence            999876

>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1

Probab=100.00  E-value=7.3e-58  Score=352.46  Aligned_cols=150  Identities=55%  Similarity=0.975  Sum_probs=132.0

Q ss_pred             CCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeccCCCCCCCCCCCcCC---CcceEEeecccccCCCCCCCcc
Q 030727            9 NGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKYPNGNRSNR   85 (172)
Q Consensus         9 ~~~~~lp~G~rF~PTDeELi~~yL~~k~~g~~lp~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~~~~~g~r~~R   85 (172)
                      .+++.|||||||+|||||||.+||++|+.|.++|..+|+++|||++|||+||+..   +.+||||+++.+++++|.|.+|
T Consensus        10 ~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g~~ewYFFs~r~~ky~~g~R~nR   89 (174)
T 3ulx_A           10 EAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGAREWYFFTPRDRKYPNGSRPNR   89 (174)
T ss_dssp             CSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSCSSEEEEEEECCC-----CCSCE
T ss_pred             ccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccCCceEEEEeccccccCCCCCcee
Confidence            4568999999999999999999999999999999999999999999999999864   4789999999999999999999


Q ss_pred             cCCcceeeeeCCCceEEeCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCC--------CCCCCeeEEEEEE
Q 030727           86 ATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA--------PQKKNLPSCGNGQ  157 (172)
Q Consensus        86 ~~~~G~Wk~~g~~k~i~~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~l~~~~~~--------~~~~~~VLCkv~~  157 (172)
                      ++++|+||++|++++|.+  +|.+||+|++|+||.++.+++.+|+|+||||+|.+....        ...++|||||||+
T Consensus        90 ~t~~G~WkatG~dk~I~~--~g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~wVlCrvf~  167 (174)
T 3ulx_A           90 AAGNGYWKATGADKPVAP--RGRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYN  167 (174)
T ss_dssp             EETTEEEEECSCCEEECC--SSSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSSEEEEEEEE
T ss_pred             ecCCceEccCCCCcEEee--CCcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCCEEEEEEEE
Confidence            999999999999999975  478999999999999999999999999999999986432        1357999999999


Q ss_pred             cCC
Q 030727          158 LGS  160 (172)
Q Consensus       158 ~~~  160 (172)
                      |.+
T Consensus       168 K~~  170 (174)
T 3ulx_A          168 KKN  170 (174)
T ss_dssp             SCC
T ss_pred             cCC
Confidence            875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1ut7a_	166	b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mou	8e-60

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 166

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  181 bits (460), Expect = 8e-60
 Identities = 78/134 (58%), Positives = 92/134 (68%), Gaps = 5/134 (3%)

Query: 12  LRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPG---DVAQERY 68
           L LPPGFRF+PTDEEL+VQYL RK         +I E+D+ K DPW LP       +E Y
Sbjct: 15  LSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWY 74

Query: 69  FFSTREAKYPNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSR 128
           FFS R+ KYPNG+R NR  GSGYWKATG DK I  S   Q VG+KK LVFY GK P G++
Sbjct: 75  FFSPRDRKYPNGSRPNRVAGSGYWKATGTDKII--STEGQRVGIKKALVFYIGKAPKGTK 132

Query: 129 TDWIMHEYRLVTAA 142
           T+WIMHEYRL+  +
Sbjct: 133 TNWIMHEYRLIEPS 146

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1ut7a_	166	No apical meristem (NAM, ANAC) {Mouse-ear cress (A	100.0

>d1ut7a_ b.143.1.1 (A:) No apical meristem (NAM, ANAC) {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All beta proteins
fold: NAC domain
superfamily: NAC domain
family: NAC domain
domain: No apical meristem (NAM, ANAC)
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.1e-57  Score=346.87  Aligned_cols=157  Identities=51%  Similarity=0.870  Sum_probs=132.3

Q ss_pred             CCcccccCCCccCCCCCeEECCChHHHHHHHHHHhHhCCCCCCcceeccCCCCCCCCCCCcCC---CcceEEeecccccC
Q 030727            1 MEKIDFMKNGVLRLPPGFRFHPTDEELVVQYLKRKIFACPLPASIIPEVDVCKSDPWDLPGDV---AQERYFFSTREAKY   77 (172)
Q Consensus         1 m~~~~~~~~~~~~lp~G~rF~PTDeELi~~yL~~k~~g~~lp~~~I~~~Dvy~~~P~~Lp~~~---~~~~yFF~~~~~~~   77 (172)
                      |++++...-++++|||||||+|||+|||.+||++|+.|.|+|.++|+++|||++|||+||+..   +++||||+++++++
T Consensus         4 ~~~~~~~~~~~l~LPpG~RF~PTDeELv~~YL~~Ki~g~~l~~~~I~~~Dvy~~~Pw~Lp~~~~~~~~~wyFft~~~~k~   83 (166)
T d1ut7a_           4 MGIQETDPLTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFGEKEWYFFSPRDRKY   83 (166)
T ss_dssp             CCCC----CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSSCSSEEEEEEECCC--
T ss_pred             ccccccCccccccCCCccccCCCcHHHHHHHHHHHHcCCCCCcccceeccCCcCChhhccchhccCcceEEEEeeecccc
Confidence            889999999999999999999999999999999999999999999999999999999999754   57899999999999


Q ss_pred             CCCCCCcccCCcceeeeeCCCceEEeCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCC---CCCCCeeEEE
Q 030727           78 PNGNRSNRATGSGYWKATGLDKQIATSRGNQIVGMKKTLVFYRGKPPHGSRTDWIMHEYRLVTAANA---PQKKNLPSCG  154 (172)
Q Consensus        78 ~~g~r~~R~~~~G~Wk~~g~~k~i~~~~~g~~iG~k~~l~f~~~~~~~~~kt~W~M~EY~l~~~~~~---~~~~~~VLCk  154 (172)
                      +++.|.+|++++|+||++|+++.|.+  +|.+||+|++|+||+++.+++.+|+|+||||+|.+....   ...++|||||
T Consensus        84 ~~g~r~~R~~g~G~Wk~~g~~~~i~~--~g~~vG~kk~l~fy~~~~~~~~~t~W~M~EY~l~~~~~~~~~~~~~~~VLCr  161 (166)
T d1ut7a_          84 PNGSRPNRVAGSGYWKATGTDKIIST--EGQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRRNGSTKLDDWVLCR  161 (166)
T ss_dssp             -----CCEEETTEEEEEEEEEEEEEE--TTEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC--------CCEEEEE
T ss_pred             CCCCccccccCCCEecccCCCceEec--CCcEEEEEEEEEEEecCCCCCCccCeEEEEEecCCcccccCccccCCEEEEE
Confidence            99999999999999999999998874  678999999999999999999999999999999986543   3457899999


Q ss_pred             EEEcC
Q 030727          155 NGQLG  159 (172)
Q Consensus       155 v~~~~  159 (172)
                      ||+|.
T Consensus       162 I~~Kk  166 (166)
T d1ut7a_         162 IYKKQ  166 (166)
T ss_dssp             EEECC
T ss_pred             EEecC
Confidence            99873