Citrus Sinensis ID: 030744

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHccccccccccHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHcc
Coil and Loop (DISEMBL)
mkqpancleDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAqtkltpfgkVQKYVEKLEDFMALLAyeepekspmfHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSqelgkdvhppfslkdfmks
Flexible Loop (DISEMBL)
mkqpanclEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEfaqtkltpfgkVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSqelgkdvhppfslkdfmks
Low Complexity Region (SEG)
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Disordered region (IsUnstruct)
*************RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLS*******************
Disordered Region (DISOPRED)
***PANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQ************PFSLKDFMK*
Disordered Region (DISEMBL)
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Disordered Region (DISPRO)
****ANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLK*F*KS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
A7SWD3	225	Glucose-induced degradati	N/A	no	0.726	0.555	0.373	1e-15
Q5ZKQ7	228	Glucose-induced degradati	yes	no	0.755	0.570	0.366	8e-15
Q32L52	228	Glucose-induced degradati	yes	no	0.755	0.570	0.366	1e-14
Q9D7M1	228	Glucose-induced degradati	yes	no	0.755	0.570	0.366	2e-14
Q9NWU2	228	Glucose-induced degradati	yes	no	0.755	0.570	0.366	5e-14
Q6PC55	228	Glucose-induced degradati	yes	no	0.755	0.570	0.351	2e-13
Q54X16	228	Glucose-induced degradati	no	no	0.75	0.565	0.340	4e-12
Q4Z8K6	962	Ran-binding proteins 9/10	no	no	0.569	0.101	0.296	0.0007

>sp|A7SWD3|GID8_NEMVE Glucose-induced degradation protein 8 homolog OS=Nematostella vectensis GN=v1g247787 PE=3 SV=1

 Score = 82.4 bits (202), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 47/126 (37%), Positives = 74/126 (58%), Gaps = 1/126 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           QP   L+ ++ R +I     +G+  +A+ +T +L  D+L+ N+ L+F L     +EL+  
Sbjct: 53  QPTAPLDSLDDRIKIREAVQKGDLEQAVSMTNKLNPDILDSNQQLYFHLQQQRLIELIRE 112

Query: 63  RKCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           +    A+EFAQ + +  G+   +Y+E+LE  MALLA++ PE+SP   LL    RQ VA  
Sbjct: 113 KDIEAAVEFAQGQFSEQGQESGRYLEELEQTMALLAFDNPEESPFGDLLHTSQRQKVASE 172

Query: 122 LNRAIL 127
           LN AIL
Sbjct: 173 LNAAIL 178

Nematostella vectensis (taxid: 45351)

>sp|Q5ZKQ7|GID8_CHICK Glucose-induced degradation protein 8 homolog OS=Gallus gallus GN=GID8 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 1/131 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 175

Query: 122 LNRAILAHAER 132
           +N+A+L +  R
Sbjct: 176 VNQAVLDYENR 186

Gallus gallus (taxid: 9031)

>sp|Q32L52|GID8_BOVIN Glucose-induced degradation protein 8 homolog OS=Bos taurus GN=GID8 PE=2 SV=1

 Score = 79.0 bits (193), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE SP   LL++  RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSE 175

Query: 122 LNRAILAHAER 132
           +N+A+L +  R
Sbjct: 176 VNQAVLDYENR 186

Bos taurus (taxid: 9913)

>sp|Q9D7M1|GID8_MOUSE Glucose-induced degradation protein 8 homolog OS=Mus musculus GN=Gid8 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL +  RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSE 175

Query: 122 LNRAILAHAER 132
           +N+A+L +  R
Sbjct: 176 VNQAVLDYENR 186

Mus musculus (taxid: 10090)

>sp|Q9NWU2|GID8_HUMAN Glucose-induced degradation protein 8 homolog OS=Homo sapiens GN=GID8 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 48/131 (36%), Positives = 76/131 (58%), Gaps = 1/131 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL    RQ V   
Sbjct: 116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSE 175

Query: 122 LNRAILAHAER 132
           +N+A+L +  R
Sbjct: 176 VNQAVLDYENR 186

Homo sapiens (taxid: 9606)

>sp|Q6PC55|GID8_DANRE Glucose-induced degradation protein 8 homolog OS=Danio rerio GN=gid8 PE=2 SV=1

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/131 (35%), Positives = 77/131 (58%), Gaps = 1/131 (0%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           +P   L+ ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct: 56  EPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRL 115

Query: 63  RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           R+   ALEFAQ++L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct: 116 RETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 175

Query: 122 LNRAILAHAER 132
           +N+A+L +  R
Sbjct: 176 VNQAVLDYENR 186

Danio rerio (taxid: 7955)

>sp|Q54X16|GID8_DICDI Glucose-induced degradation protein 8 homolog OS=Dictyostelium discoideum GN=DDB_G0279265 PE=3 SV=2

 Score = 70.9 bits (172), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 6/135 (4%)

Query: 24  GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFG-KV 82
           G+  K IE+  +L  ++L+ N  L+F L     +EL+      EAL+FAQ +L P G + 
Sbjct: 81  GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEEN 140

Query: 83  QKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL---AHAERPRYAAME 139
            K++E+LE  ++LL +E+  KSP+  LL    RQ  A  LN AIL   +  + P+   + 
Sbjct: 141 NKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQDKDPKLPTIL 200

Query: 140 RLIQ--QTTAVRQCL 152
           +L++  QT    +C+
Sbjct: 201 KLLKWAQTQLDSKCI 215

Dictyostelium discoideum (taxid: 44689)

>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1

 Score = 43.5 bits (101), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 32/108 (29%), Positives = 52/108 (48%), Gaps = 10/108 (9%)

Query: 61  CSRKCTEALEFAQTKLTPFGK--------VQKYVEKLEDFMALLAYEEPEKSPMFHLLSL 112
           C R   + LEF + +L+  G+         ++  + LED  +L+AY  P  SP+  LL  
Sbjct: 844 CGRVIEKILEFGK-ELSSMGQQLEKENLMTEEERQMLEDAFSLIAYSNPWSSPLGWLLCP 902

Query: 113 EYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQE-LGKD 159
             R+ V+  LN AIL      R   +E L+   + + + + Q  LG+D
Sbjct: 903 SRRESVSTTLNSAILESLNFERRPPLEYLVAHASELIKVIGQHSLGED 950

May be involved in JAK/STAT signaling. Isoform D is required for the proper arrangement of niche cells and is autonomously required for proper niche cell size, isoform C negatively regulates the adhesive properties of the niche. The germline stem cell (GSC) niche in ovaries is made up of two somatic cell types: 8-9 cells in a single-filed array make up the terminal filament (TF), and a tight cluster of 5 or 6 cap cells (CpC). Regulating the size and adhesive properties of the CpCs is an important component of the mechanism that controls their capacity to support stem cells, isoform C and isoform D are important factors in mediating this regulation. In contrast, isoform C acts as a positive regulator of cell adhesion in follicle cell epithelium.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
302142570	215	unnamed protein product [Vitis vinifera]	1.0	0.8	0.860	4e-79
225458141	216	PREDICTED: protein C20orf11 homolog [Vit	1.0	0.796	0.860	4e-79
317106667	215	JHL18I08.4 [Jatropha curcas]	1.0	0.8	0.831	6e-78
356518435	215	PREDICTED: UPF0559 protein v1g247787-lik	0.988	0.790	0.829	1e-75
358248824	214	uncharacterized protein LOC100801338 [Gl	0.988	0.794	0.830	6e-75
224066094	215	predicted protein [Populus trichocarpa]	1.0	0.8	0.761	2e-69
222619339	833	hypothetical protein OsJ_03649 [Oryza sa	0.988	0.204	0.735	4e-69
218189143	833	hypothetical protein OsI_03937 [Oryza sa	0.988	0.204	0.735	4e-69
449460223	215	PREDICTED: glucose-induced degradation p	1.0	0.8	0.761	5e-68
297597705	216	Os01g0775600 [Oryza sativa Japonica Grou	0.976	0.777	0.744	6e-67

>gi|302142570|emb|CBI19773.3| unnamed protein product [Vitis vinifera]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/172 (86%), Positives = 156/172 (90%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           MKQPA+  EDME RKRI HFALEGNALKAIELTE+LA DLLEKNKDLHFDLLSLHFV+LV
Sbjct: 44  MKQPADYQEDMEKRKRIFHFALEGNALKAIELTEQLADDLLEKNKDLHFDLLSLHFVKLV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           CSRKCTEALEFAQTKLTPFGKVQ YVEKLEDFM LLAYEEPEKSPMFHLLSLEYRQ VAD
Sbjct: 104 CSRKCTEALEFAQTKLTPFGKVQNYVEKLEDFMTLLAYEEPEKSPMFHLLSLEYRQQVAD 163

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
           +LNRA+LAHA  P  +AMERLIQQTT VRQCL+QEL KD  PPFSLKDF+KS
Sbjct: 164 SLNRALLAHANLPSCSAMERLIQQTTVVRQCLNQELSKDPPPPFSLKDFLKS 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458141|ref|XP_002280458.1| PREDICTED: protein C20orf11 homolog [Vitis vinifera]

 Score =  298 bits (764), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 148/172 (86%), Positives = 156/172 (90%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           MKQPA+  EDME RKRI HFALEGNALKAIELTE+LA DLLEKNKDLHFDLLSLHFV+LV
Sbjct: 45  MKQPADYQEDMEKRKRIFHFALEGNALKAIELTEQLADDLLEKNKDLHFDLLSLHFVKLV 104

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           CSRKCTEALEFAQTKLTPFGKVQ YVEKLEDFM LLAYEEPEKSPMFHLLSLEYRQ VAD
Sbjct: 105 CSRKCTEALEFAQTKLTPFGKVQNYVEKLEDFMTLLAYEEPEKSPMFHLLSLEYRQQVAD 164

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
           +LNRA+LAHA  P  +AMERLIQQTT VRQCL+QEL KD  PPFSLKDF+KS
Sbjct: 165 SLNRALLAHANLPSCSAMERLIQQTTVVRQCLNQELSKDPPPPFSLKDFLKS 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106667|dbj|BAJ53170.1| JHL18I08.4 [Jatropha curcas]

 Score =  295 bits (754), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 143/172 (83%), Positives = 153/172 (88%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           MKQPA+C++DME RKRI  +ALEGN LKAIELTEELA DLLE NKDLHFDLLSLHF+ELV
Sbjct: 44  MKQPADCVQDMEKRKRIFRYALEGNVLKAIELTEELAHDLLEINKDLHFDLLSLHFIELV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           C+RKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLS+EYRQ V D
Sbjct: 104 CTRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSMEYRQQVVD 163

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
           NLNRAILAHA RP Y AMERLIQQ T VRQ L+Q+ GKD   PFSLKDF+K 
Sbjct: 164 NLNRAILAHANRPSYTAMERLIQQMTVVRQSLNQDHGKDGLQPFSLKDFLKG 215

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518435|ref|XP_003527884.1| PREDICTED: UPF0559 protein v1g247787-like [Glycine max]

 Score =  287 bits (735), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 141/170 (82%), Positives = 151/170 (88%)

Query: 3   QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
           QPA+ LEDM+ RKRI HFALEGNALKAIELTE+LA+D+LE NKDL FDLLSLHFVELVCS
Sbjct: 46  QPADYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVCS 105

Query: 63  RKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNL 122
           RKCTEALEFAQTKL PFGK  KY+EKLEDFMALLAY+EPEKSPMFHLLSLEYRQ VAD+L
Sbjct: 106 RKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADSL 165

Query: 123 NRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
           NRAILAH   P Y AMERLIQQ T VRQCLSQE GKD  PPFSLKDF++S
Sbjct: 166 NRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKDAPPPFSLKDFLRS 215

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248824|ref|NP_001239946.1| uncharacterized protein LOC100801338 [Glycine max] gi|255636536|gb|ACU18606.1| unknown [Glycine max]

 Score =  285 bits (728), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 142/171 (83%), Positives = 151/171 (88%), Gaps = 1/171 (0%)

Query: 2   KQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVC 61
           KQP + LEDM+ RKRI HFALEGNALKAIELTE+LA+D+LE NKDL FDLLSLHFVELVC
Sbjct: 45  KQPTDYLEDMDKRKRIFHFALEGNALKAIELTEQLAKDILENNKDLQFDLLSLHFVELVC 104

Query: 62  SRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
           SRKCTEALEFAQTKL PFGK  KY+EKLEDFMALLAY+EPEKSPMFHLLSLEYRQ VAD+
Sbjct: 105 SRKCTEALEFAQTKLGPFGKEPKYMEKLEDFMALLAYKEPEKSPMFHLLSLEYRQQVADS 164

Query: 122 LNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
           LNRAILAH   P Y AMERLIQQ T VRQCLSQE GKD  PPFSLKDF+KS
Sbjct: 165 LNRAILAHLNLPSYTAMERLIQQATVVRQCLSQEAGKD-GPPFSLKDFLKS 214

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066094|ref|XP_002302009.1| predicted protein [Populus trichocarpa] gi|222843735|gb|EEE81282.1| predicted protein [Populus trichocarpa]

 Score =  266 bits (681), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 147/172 (85%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           M +PA+ +EDME RK I+  ALEGNALKA+ELTE++A DLLE NKDLHFDLLSLHF +LV
Sbjct: 44  MPEPADFIEDMEKRKGIVRCALEGNALKAVELTEQVAGDLLENNKDLHFDLLSLHFADLV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           C++KCTEALEFAQ KLTPFGK +KYVEKLEDFMALLAYEEPEKSP+FHLL LEYRQHVAD
Sbjct: 104 CAKKCTEALEFAQKKLTPFGKEKKYVEKLEDFMALLAYEEPEKSPVFHLLGLEYRQHVAD 163

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
            LNRAILAH   P Y A+ERLIQQTT VRQ L+Q+ GKD  P FSLKDF+K 
Sbjct: 164 KLNRAILAHTNLPSYTAIERLIQQTTVVRQSLNQDHGKDGIPLFSLKDFLKG 215

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222619339|gb|EEE55471.1| hypothetical protein OsJ_03649 [Oryza sativa Japonica Group]

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 144/170 (84%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           ++ P +   D++ RK I  F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV
Sbjct: 45  LELPVDYTVDVDKRKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELV 104

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
            SRKCTEALEF Q KLTPFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD
Sbjct: 105 RSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVAD 164

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFM 170
           +LNRA+LAHA RP Y+++ER+IQQ T VRQ L QE+GKD +PPFSLK F+
Sbjct: 165 SLNRAVLAHANRPAYSSLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFL 214

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189143|gb|EEC71570.1| hypothetical protein OsI_03937 [Oryza sativa Indica Group]

 Score =  265 bits (677), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 125/170 (73%), Positives = 144/170 (84%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           ++ P +   D++ RK I  F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV
Sbjct: 45  LELPVDYTVDVDKRKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELV 104

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
            SRKCTEALEF Q KLTPFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD
Sbjct: 105 RSRKCTEALEFGQKKLTPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVAD 164

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFM 170
           +LNRA+LAHA RP Y+++ER+IQQ T VRQ L QE+GKD +PPFSLK F+
Sbjct: 165 SLNRAVLAHANRPAYSSLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFL 214

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460223|ref|XP_004147845.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus] gi|449521475|ref|XP_004167755.1| PREDICTED: glucose-induced degradation protein 8 homolog [Cucumis sativus]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 131/172 (76%), Positives = 144/172 (83%)

Query: 1   MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
           +K   + L DM  RKRI  FA+EGNALKAIELTEE+A  LLEK +DLHFDLLSLHFVELV
Sbjct: 44  LKHHTDYLVDMAKRKRIYDFAVEGNALKAIELTEEVAPGLLEKIEDLHFDLLSLHFVELV 103

Query: 61  CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
           CSRKCTEALEFAQ KL PFGK+ KYVEKLEDFMALLAYEEPEKSPMFHLLS++YRQ VA+
Sbjct: 104 CSRKCTEALEFAQVKLAPFGKLHKYVEKLEDFMALLAYEEPEKSPMFHLLSVDYRQRVAE 163

Query: 121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMKS 172
           +LNRAILAH   P Y AMERLI+Q T VRQ LSQELGKD    FSL+DF+KS
Sbjct: 164 SLNRAILAHGNLPSYTAMERLIKQVTVVRQSLSQELGKDGFQSFSLRDFLKS 215

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297597705|ref|NP_001044411.2| Os01g0775600 [Oryza sativa Japonica Group] gi|53791663|dbj|BAD53233.1| unknown protein [Oryza sativa Japonica Group] gi|215765733|dbj|BAG87430.1| unnamed protein product [Oryza sativa Japonica Group] gi|215768556|dbj|BAH00785.1| unnamed protein product [Oryza sativa Japonica Group] gi|255673736|dbj|BAF06325.2| Os01g0775600 [Oryza sativa Japonica Group]

 Score =  258 bits (659), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 125/168 (74%), Positives = 142/168 (84%)

Query: 4   PANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSR 63
           P +   D++ RK I  F LEGNALKAI+LTEELA +LLE + DLHFDLLSLHF+ELV SR
Sbjct: 48  PVDYTVDVDKRKAIFSFVLEGNALKAIDLTEELAPNLLENDMDLHFDLLSLHFIELVRSR 107

Query: 64  KCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLN 123
           KCTEALEF Q KLTPFGKV KYVEKLEDFMALLAYEEPEKSPMFHLLS EYRQ+VAD+LN
Sbjct: 108 KCTEALEFGQKKLTPFGKVPKYVEKLEDFMALLAYEEPEKSPMFHLLSPEYRQNVADSLN 167

Query: 124 RAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMK 171
           RA+LAHA RP Y+++ER+IQQ T VRQ L QE+GKD +PPFSLK F+ 
Sbjct: 168 RAVLAHANRPAYSSLERVIQQATVVRQYLQQEVGKDSYPPFSLKAFLN 215

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
TAIR|locus:2198796	213	AT1G06060 "AT1G06060" [Arabido	0.994	0.802	0.713	2.1e-61
UNIPROTKB|Q5ZKQ7	228	GID8 "Glucose-induced degradat	0.813	0.614	0.354	2e-17
UNIPROTKB|Q32L52	228	GID8 "Glucose-induced degradat	0.813	0.614	0.354	4.1e-17
MGI|MGI:1923675	228	Gid8 "GID complex subunit 8 ho	0.813	0.614	0.354	4.1e-17
UNIPROTKB|Q9NWU2	228	GID8 "Glucose-induced degradat	0.813	0.614	0.354	8.6e-17
ZFIN|ZDB-GENE-040426-1669	250	gid8a "GID complex subunit 8 h	0.813	0.56	0.340	2.9e-16
DICTYBASE|DDB_G0279265	228	DDB_G0279265 "UPF0559 protein"	0.796	0.600	0.328	2.3e-14
TAIR|locus:2008460	243	AT1G61150 "AT1G61150" [Arabido	0.691	0.489	0.349	3e-14
ASPGD|ASPL0000064925	271	AN7501 [Emericella nidulans (t	0.686	0.435	0.372	5e-11
ASPGD|ASPL0000040918	673	AN11164 [Emericella nidulans (	0.534	0.136	0.351	1.1e-10

TAIR|locus:2198796 AT1G06060 "AT1G06060" [Arabidopsis thaliana (taxid:3702)]

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 122/171 (71%), Positives = 139/171 (81%)

Query:     1 MKQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV 60
             +KQPA   ++ME RK+I+HF LE  ALKA ELTE+LAQDLLEKNKDL FDLL LHFVEL+
Sbjct:    42 VKQPAIDRDNMERRKQIIHFILERKALKAFELTEQLAQDLLEKNKDLQFDLLCLHFVELI 101

Query:    61 CSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVAD 120
             C+  CTEAL+F +T+L PFGKV+KYVEKLED MALLAYE+PEKSPMFHLLS EYRQ VAD
Sbjct:   102 CAGNCTEALKFGKTRLAPFGKVKKYVEKLEDVMALLAYEDPEKSPMFHLLSSEYRQQVAD 161

Query:   121 NLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDFMK 171
             NLNR IL H   P Y  MER+IQQ T VRQ L++E GKD  PPFSLKD +K
Sbjct:   162 NLNRTILEHTNHPSYTPMERIIQQVTVVRQYLTEENGKDAFPPFSLKDSLK 212

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q5ZKQ7 GID8 "Glucose-induced degradation protein 8 homolog" [Gallus gallus (taxid:9031)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 51/144 (35%), Positives = 85/144 (59%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAISLINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 175

Query:   122 LNRAILAHAER---PRYAAMERLI 142
             +N+A+L +  R   P+ A + +L+
Sbjct:   176 VNQAVLDYENRESTPKLAKLLKLL 199

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q32L52 GID8 "Glucose-induced degradation protein 8 homolog" [Bos taurus (taxid:9913)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 51/144 (35%), Positives = 84/144 (58%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE SP   LL++  RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDNPEDSPFGDLLNMMQRQKVWSE 175

Query:   122 LNRAILAHAER---PRYAAMERLI 142
             +N+A+L +  R   P+ A + +L+
Sbjct:   176 VNQAVLDYENRESTPKLAKLLKLL 199

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1923675 Gid8 "GID complex subunit 8 homolog (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 210 (79.0 bits), Expect = 4.1e-17, P = 4.1e-17
 Identities = 51/144 (35%), Positives = 84/144 (58%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL +  RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHMMQRQKVWSE 175

Query:   122 LNRAILAHAER---PRYAAMERLI 142
             +N+A+L +  R   P+ A + +L+
Sbjct:   176 VNQAVLDYENRESTPKLAKLLKLL 199

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9NWU2 GID8 "Glucose-induced degradation protein 8 homolog" [Homo sapiens (taxid:9606)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 51/144 (35%), Positives = 83/144 (57%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P+  LE ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    56 EPSVDLETLDERIKIREMILKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRQ 115

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQT+L   G+  +  + ++E  +ALLA++ PE+SP   LL    RQ V   
Sbjct:   116 RETEAALEFAQTQLAEQGEESRECLTEMERTLALLAFDSPEESPFGDLLHTMQRQKVWSE 175

Query:   122 LNRAILAHAER---PRYAAMERLI 142
             +N+A+L +  R   P+ A + +L+
Sbjct:   176 VNQAVLDYENRESTPKLAKLLKLL 199

GO:0005634 "nucleus" evidence=IEA

ZFIN|ZDB-GENE-040426-1669 gid8a "GID complex subunit 8 homolog a (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 49/144 (34%), Positives = 84/144 (58%)

Query:     3 QPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCS 62
             +P   L+ ++ R +I    L+G   +AI L   L  +LL+ N+ L+F L   H +EL+  
Sbjct:    78 EPNVDLDSLDERIKIREMVLKGQIQEAIALINSLHPELLDTNRYLYFHLQQQHLIELIRL 137

Query:    63 RKCTEALEFAQTKLTPFGKVQKY-VEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADN 121
             R+   ALEFAQ++L   G+  +  + ++E  +ALLA++ PE+SP   LL++  RQ V   
Sbjct:   138 RETEAALEFAQSQLAEQGEESRECLTEMERTLALLAFDNPEESPFGDLLNMMQRQKVWSE 197

Query:   122 LNRAILAHAER---PRYAAMERLI 142
             +N+A+L +  R   P+ A + +L+
Sbjct:   198 VNQAVLDYENRESTPKLAKLLKLL 221

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

DICTYBASE|DDB_G0279265 DDB_G0279265 "UPF0559 protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 47/143 (32%), Positives = 77/143 (53%)

Query:    24 GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQ 83
             G+  K IE+  +L  ++L+ N  L+F L     +EL+      EAL+FAQ +L P G+  
Sbjct:    81 GDVEKGIEIVNDLNPEILDTNPQLYFHLQQQKLIELIRKGMTAEALKFAQDELAPQGEEN 140

Query:    84 -KYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAER---PRYAAME 139
              K++E+LE  ++LL +E+  KSP+  LL    RQ  A  LN AIL    +   P+   + 
Sbjct:   141 NKFLEELEKTISLLVFEDTAKSPLSSLLDHSQRQKTAGELNSAILLSQSQDKDPKLPTIL 200

Query:   140 RLIQ--QTTAVRQCLSQELGKDV 160
             +L++  QT    +C+  ++   V
Sbjct:   201 KLLKWAQTQLDSKCIYPKITNTV 223

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

TAIR|locus:2008460 AT1G61150 "AT1G61150" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 43/123 (34%), Positives = 70/123 (56%)

Query:    24 GNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKV- 82
             GN   AIE   +L  ++L+ N +L F L     +EL+   K  EALEFAQ +L P G+  
Sbjct:    92 GNVEDAIEKVNDLNPEILDTNPELFFHLQQQRLIELIRQGKTEEALEFAQEELAPRGEEN 151

Query:    83 QKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAIL---AHAERPRYAAME 139
             Q ++E+LE  +ALL +++    P+  LL L +R   A  +N AIL   +H + P+  ++ 
Sbjct:   152 QAFLEELEKTVALLVFDDASTCPVKELLDLSHRLKTASEVNAAILTSQSHEKDPKLPSLL 211

Query:   140 RLI 142
             +++
Sbjct:   212 KML 214

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ASPGD|ASPL0000064925 AN7501 [Emericella nidulans (taxid:162425)]

 Score = 155 (59.6 bits), Expect = 5.0e-11, P = 5.0e-11
 Identities = 48/129 (37%), Positives = 71/129 (55%)

Query:    10 DME-MRKRI-LHFAL-EGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELV--CSRK 64
             D+E +R+R+ +  A+  GN   AIE   EL   +L++N  LHF LL L  VEL+  CS  
Sbjct:    65 DVESIRERVEIRTAIYSGNIQAAIEKINELNPQILDENPSLHFSLLRLQLVELIRSCSVN 124

Query:    65 ----CTEALEFAQTKLTPFGKVQ-KYVEKLEDFMALLAYEEPEKSP-MFHLLSLEYRQHV 118
                  T ALEFA ++L P      +++E LE  +ALL Y +   +P +  LL  + R+ +
Sbjct:   125 PDGDITPALEFATSQLAPRAPTNPQFLEDLEKTLALLIYPKENLTPSLAPLLHSDLRRDI 184

Query:   119 ADNLNRAIL 127
                +N AIL
Sbjct:   185 YAKVNAAIL 193

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

ASPGD|ASPL0000040918 AN11164 [Emericella nidulans (taxid:162425)]

 Score = 121 (47.7 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
 Identities = 33/94 (35%), Positives = 51/94 (54%)

Query:    66 TEALEFAQTKLTPFGKVQKYVEK--LEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLN 123
             TEA+++ Q     +   +   +K  L+D  +L+AY +P++S   H L    R  VA+ LN
Sbjct:   567 TEAVQYGQQLRIDYPSDENGGDKKLLDDIFSLVAYPDPKRSVHGHYLDPAGRVAVAEELN 626

Query:   124 RAILAHAERPRYAAMERLIQQTTAVRQCLSQELG 157
              AIL    +   AA+ERL QQT  +   +S+E G
Sbjct:   627 SAILVSLGKSSAAALERLYQQTEVLVNEISEEGG 660

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00014529001 SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (215 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
pfam10607	144	pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif	5e-29
smart00757	99	smart00757, CRA, CT11-RanBPM	2e-18
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	4e-08

>gnl|CDD|220824 pfam10607, CLTH, CTLH/CRA C-terminal to LisH motif domain

 Score =  104 bits (261), Expect = 5e-29
 Identities = 43/142 (30%), Positives = 75/142 (52%), Gaps = 2/142 (1%)

Query: 10  DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEAL 69
             + R +I    L G+  +A+E   E   +LL+ N +L F+L    F+EL+   K  EAL
Sbjct: 1   VFKERNKIRESLLNGDLEEALEWCNENKPELLKINSNLEFELRLQQFIELIREGKILEAL 60

Query: 70  EFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPE-KSPMFHLLSLEYRQHVADNLNRAILA 128
           E+A+  L PF   ++++++++  M LLA+ +P   SP   LLS    + +A+  NRAIL 
Sbjct: 61  EYARENLAPFFN-EQHLKEIQKLMGLLAFPDPTDSSPYKSLLSPSRWEKLANEFNRAILK 119

Query: 129 HAERPRYAAMERLIQQTTAVRQ 150
                  + +E L++   +  +
Sbjct: 120 LLGLSSESPLEILLKAGLSALK 141

RanBPM is a scaffolding protein and is important in regulating cellular function in both the immune system and the nervous system. This domain is at the C-terminus of the proteins and is the binding domain for the CRA motif (for CT11-RanBPM), which is comprised of approximately 100 amino acids at the C terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined. This region contains CTLH and CRA domains annotated by SMART; however, these may be a single domain, and it is refereed to as a C-terminal to LisH motif. Length = 144

>gnl|CDD|214806 smart00757, CRA, CT11-RanBPM

 Score = 75.0 bits (185), Expect = 2e-18
 Identities = 36/96 (37%), Positives = 50/96 (52%), Gaps = 3/96 (3%)

Query: 63  RKCTEALEFAQTKLTPFGKVQKYVEK-LEDFMALLAYEEP-EKSPMFHLLSLEYRQHVAD 120
            K  EAL +A+  L PF K  +   K LE  MALLAY +P E SP   LLS   R+ +A+
Sbjct: 1   GKIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAE 60

Query: 121 NLNRAILAHAE-RPRYAAMERLIQQTTAVRQCLSQE 155
            LN AIL     +   + +E L+    A  + L ++
Sbjct: 61  ELNSAILELLHGKSSESPLEILLSAGLAALKTLLEK 96

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi). Length = 99

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 47.2 bits (113), Expect = 4e-08
 Identities = 22/54 (40%), Positives = 29/54 (53%)

Query: 14 RKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTE 67
          RKRI    L+G+  +A+E    L   LLE+N  L F+L    F+ELV   K  E
Sbjct: 5  RKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	100.0
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	100.0
KOG0396	389	consensus Uncharacterized conserved protein [Funct	99.86
smart00757	99	CRA CT11-RanBPM. protein-protein interaction domai	99.82
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	99.73
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	99.47
KOG1477	469	consensus SPRY domain-containing proteins [General	99.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	98.35
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	89.34
COG5109	396	Uncharacterized conserved protein, contains RING Z	81.72

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=100.00  E-value=3.1e-34  Score=214.24  Aligned_cols=141  Identities=35%  Similarity=0.574  Sum_probs=133.5

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHH
Q 030744           10 DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKL   89 (172)
Q Consensus        10 ~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l   89 (172)
                      ++.+|+.|+++|++|++++|++|+++++|.+++.++.++|.|++|+|||||+++++.+||+|||+++.++.  ..+.+++
T Consensus         1 ~~~~r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~--~~~~~~l   78 (145)
T PF10607_consen    1 SFKERKKIRQAILNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFN--DEFLEEL   78 (145)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhH--HHHHHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999997665  3689999


Q ss_pred             HHHHhHhcccCCCC---CcchhcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHH
Q 030744           90 EDFMALLAYEEPEK---SPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCL  152 (172)
Q Consensus        90 ~~~~~LLay~~~~~---sp~~~ll~~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~~~~~~~~l  152 (172)
                      +++|+||+|++|.+   +|+++++++++|+.+|+.||++|+.+.|.|+.|+|+.++++..++..++
T Consensus        79 ~~~~~lL~~~~~~~~~~s~~~~l~~~~~~~~la~~~~~~~l~~~~~~~~s~L~~~~~~g~~~l~~l  144 (145)
T PF10607_consen   79 KKLMSLLAYPDPEEPLPSPYKELLSPERREELAEEFNSAILKSYGLPKESPLEVILKAGLSALKTL  144 (145)
T ss_pred             HHHHHHHHcCCcccccchHHHHHhChHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHhhhc
Confidence            99999999999987   7999999999999999999999999999999999999999998887654

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=100.00  E-value=6.8e-34  Score=224.39  Aligned_cols=154  Identities=39%  Similarity=0.539  Sum_probs=147.8

Q ss_pred             CCchhcHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCC
Q 030744            2 KQPANCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK   81 (172)
Q Consensus         2 ~~~~~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~   81 (172)
                      ++|..|++++..|..|+.+|..|+|+.|++.+++++|+++++|.+|.|.|++|+||||||.|..++||+|||+++++++.
T Consensus        56 ~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~  135 (228)
T KOG2659|consen   56 KPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRELFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAE  135 (228)
T ss_pred             CCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHcccccc
Confidence            45689999999999999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             -chhhHHHHHHHHhHhcccCCCCCcchhcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHh
Q 030744           82 -VQKYVEKLEDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQE  155 (172)
Q Consensus        82 -~~~~~~~l~~~~~LLay~~~~~sp~~~ll~~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~~~~~~~~l~~~  155 (172)
                       +++++.+++++|++|+|++|+.||++++++.++|+++|++||++||.+++.+..+.|..+++...+.+..+...
T Consensus       136 e~~~~~~elE~~l~lLvf~~~~~sp~~~l~~~s~R~kvA~~vN~aiL~~~~~~~~~~l~~llk~~~~~~~~~~~~  210 (228)
T KOG2659|consen  136 ENPKKMEELERTLALLVFELSQESPSAELLSQSLRQKVASEVNSAILASQEHESEPKLPFLLKLISWAQEELDRE  210 (228)
T ss_pred             ccHHHHHHHHHHHHHHHcCCcccCcHHHHHHHHHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHhHh
Confidence             77899999999999999999999999999999999999999999999999999999999999888888777665

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.86  E-value=8.9e-21  Score=157.71  Aligned_cols=137  Identities=22%  Similarity=0.265  Sum_probs=128.4

Q ss_pred             hcHHhHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhh
Q 030744            6 NCLEDMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKY   85 (172)
Q Consensus         6 ~~~~~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~   85 (172)
                      .|.+-.+.-+.|+++|+.|++.+|+.||++|.-.+-+.++.++|.++.|+|||||+.+++.+||+|++++|++++  .++
T Consensus       148 vD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~~S~lEf~lRlQefIELi~~~~~~~Ai~~akk~f~~~~--~~~  225 (389)
T KOG0396|consen  148 VDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKEESSLEFQLRLQEFIELIKVDNYDKAIAFAKKHFAPWA--KSH  225 (389)
T ss_pred             HhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhhhh--hhh
Confidence            466777888999999999999999999999999999999999999999999999999999999999999999998  488


Q ss_pred             HHHHHHHHhHhcccC-CCCCcchhcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 030744           86 VEKLEDFMALLAYEE-PEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQ  144 (172)
Q Consensus        86 ~~~l~~~~~LLay~~-~~~sp~~~ll~~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~  144 (172)
                      ...++.+||+|||+. +..++|..+++.+||+.+++.+-+-.+...|+|..|+|-..++.
T Consensus       226 ~~~Lk~a~g~laF~~~t~~sky~~l~~~~rw~~l~~lF~s~a~~l~~i~~~~~L~~~l~~  285 (389)
T KOG0396|consen  226 KSDLKLAMGLLAFPKYTSSSKYLNLLTADRWSVLADLFLSEALKLFGIPINPALTIYLQA  285 (389)
T ss_pred             HHHHHHHHHhhcCccccCcccccCcccHHHHHHHHHHhhHHHHHHhCCCCCcHHHHHHHh
Confidence            999999999999986 55567999999999999999999999999999999999888874

>smart00757 CRA CT11-RanBPM

Probab=99.82  E-value=1.9e-19  Score=125.93  Aligned_cols=94  Identities=39%  Similarity=0.560  Sum_probs=87.1

Q ss_pred             ChHHHHHHHHhhccCcCC-chhhHHHHHHHHhHhcccCC-CCCcchhcCCHHHHHHHHHHHHHHHHHhc-CCCCchHHHH
Q 030744           64 KCTEALEFAQTKLTPFGK-VQKYVEKLEDFMALLAYEEP-EKSPMFHLLSLEYRQHVADNLNRAILAHA-ERPRYAAMER  140 (172)
Q Consensus        64 ~~~eAi~~ar~~l~~~~~-~~~~~~~l~~~~~LLay~~~-~~sp~~~ll~~~~r~~la~~vn~aIL~~~-g~~~~s~Le~  140 (172)
                      ++.+||+|||+++++|.. ++.+.++++++||||||+++ +.+|+++++++++|+.+|++||++||... |.+.+|.|+.
T Consensus         2 ~~~eAi~yar~~l~~~~~~~~~~~~el~~~m~llaf~~~~~~sp~~~ll~~~~~~~la~~~n~~~l~~~~~~~~~s~L~~   81 (99)
T smart00757        2 KIEEALAYARELLAPFAKEHEKFLKELEKTMALLAYPDPTEPSPYKELLSPSQREKLAEELNSAILELLHGKSSESPLEI   81 (99)
T ss_pred             cHHHHHHHHHHHHhhhcccCHHHHHHHHHHHHHHhcCCCCCCccHHHHCCHHHHHHHHHHHHHHHHHHccCCCCCChHHH
Confidence            578999999999999986 55568899999999999998 89999999999999999999999999998 9999999999


Q ss_pred             HHHHHHHHHHHHHHhcC
Q 030744          141 LIQQTTAVRQCLSQELG  157 (172)
Q Consensus       141 l~~~~~~~~~~l~~~~~  157 (172)
                      ++++..++...+...++
T Consensus        82 ~~~~~~~~~~~l~~~~~   98 (99)
T smart00757       82 LLSAGLAALKTLLEKGG   98 (99)
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999998887664

protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi)

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.73  E-value=3.9e-17  Score=137.25  Aligned_cols=132  Identities=28%  Similarity=0.387  Sum_probs=121.2

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChH--HHHHHHHhhccCcCCchhhHHH
Q 030744           11 MEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCT--EALEFAQTKLTPFGKVQKYVEK   88 (172)
Q Consensus        11 ~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~--eAi~~ar~~l~~~~~~~~~~~~   88 (172)
                      .-+-++|.++|..||+++|++|+..+...|.+.++.|+|+|+.++|+++++.|.-.  +||.|||++++||+  ..+.++
T Consensus       156 F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s~LE~~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~--~~~~~e  233 (394)
T KOG2817|consen  156 FVELNQIVEALKERDLEPALEWAESNRQKLKEKSSSLEFKLHSLHFLSLIRGGKSDQREALRYARTHFAPFV--ADHLRE  233 (394)
T ss_pred             HHHHHHHHHHHHhccchhHHHHHHHhhhhhccccccHHHHHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccc--cchHHH
Confidence            44568899999999999999999999999999999999999999999999988766  99999999999998  456899


Q ss_pred             HHHHHhHhccc-C-CCCCcchhcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 030744           89 LEDFMALLAYE-E-PEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQ  144 (172)
Q Consensus        89 l~~~~~LLay~-~-~~~sp~~~ll~~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~  144 (172)
                      ++.+|++|.|- + .++|||.+++++..|..+.+++-+-.+..+|+|.+|+|-.++.-
T Consensus       234 IQklm~sl~~l~~gl~~spy~~~ls~~~w~~~~~~f~r~ycallg~s~eSPL~v~v~a  291 (394)
T KOG2817|consen  234 IQKLMGSLLYLRNGLEKSPYSEILSPKLWKELTEEFTREYCALLGISVESPLSVLVNA  291 (394)
T ss_pred             HHHHHHHHHHHHcCCCCCChHHHhCHHHHHHHHHHHHHHHHHHcCCCccCcHHHHHHh
Confidence            99999999994 3 57999999999999999999999999999999999888877764

>smart00668 CTLH C-terminal to LisH motif

Probab=99.47  E-value=1.1e-13  Score=87.55  Aligned_cols=56  Identities=38%  Similarity=0.524  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChH
Q 030744           11 MEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCT   66 (172)
Q Consensus        11 ~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~   66 (172)
                      ..+|..|+++|+.|+|++|++|++.++|.+.+.++.+.|.|++|+|+||++.++..
T Consensus         2 ~~~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~l~f~L~~q~~lell~~~~~~   57 (58)
T smart00668        2 FDERKRIRELILKGDWDEALEWLSSLKPPLLERNSKLEFELRKQKFLELVRQGKLE   57 (58)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCCchhHHHHHHHHHHHHcCCcC
Confidence            46899999999999999999999999999999999999999999999999987653

Alpha-helical motif of unknown function.

>KOG1477 consensus SPRY domain-containing proteins [General function prediction only]

Probab=99.00  E-value=7.8e-11  Score=103.16  Aligned_cols=157  Identities=24%  Similarity=0.165  Sum_probs=130.6

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHhcHHHHc-cCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCC---chhhHHHH
Q 030744           14 RKRILHFALEGNALKAIELTEELAQDLLE-KNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGK---VQKYVEKL   89 (172)
Q Consensus        14 R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~-~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~---~~~~~~~l   89 (172)
                      |+.+.....+|....|+.-....+....+ +.+...+.+.|+.+|.+.+.+.+...+++.+..+++...   +.....++
T Consensus       308 ~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~v~~e~~~~k~~l~~~~g~~~~~~~~~~~  387 (469)
T KOG1477|consen  308 RKGRGQFTRNGAYNAALIPTYRKVGQVFEVDYPQRGAKDPCGLHVNLGRAGFVFIEANAKKWELAKDYGIKKNSAAVGML  387 (469)
T ss_pred             hcCcceeechhhhcccccccccccceeecccccchhhccchhhhhhHHHHHHHHHHHHHHHHhhhhhhCcCccccccccc
Confidence            34444445555555555444444432222 457899999999999999999999999999988887654   66788999


Q ss_pred             HHHHhHhcccCCCCCcchhcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhh
Q 030744           90 EDFMALLAYEEPEKSPMFHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQELGKDVHPPFSLKDF  169 (172)
Q Consensus        90 ~~~~~LLay~~~~~sp~~~ll~~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~  169 (172)
                      +.+++||+|++|..||...++++.+|+-+++.+|.+||...+.+..+.||+++.|+.++...+...+++.. .++++.+.
T Consensus       388 ~~s~~Llays~p~~s~~g~~~~~~~~e~v~~~~n~~il~t~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~  466 (469)
T KOG1477|consen  388 SDSSSLLAYSDPEESPVGYLLDPIQREPVAEALNSAILETDNNSKDPDLERVLSQTPAELSLYARDNPPRN-DFVRDRDY  466 (469)
T ss_pred             cchHHHHHhcCcccCccccccCcccchhHHhhhcccccccCCCCccchhhhhhccchhhHhhhhhcCCCcc-ceecchhh
Confidence            99999999999999999999999999999999999999999999999999999999999999999988877 78888877


Q ss_pred             hc
Q 030744          170 MK  171 (172)
Q Consensus       170 ~~  171 (172)
                      ++
T Consensus       467 ~~  468 (469)
T KOG1477|consen  467 FH  468 (469)
T ss_pred             hc
Confidence            65

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=98.35  E-value=3.5e-06  Score=72.18  Aligned_cols=137  Identities=16%  Similarity=0.139  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHh-cHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHH
Q 030744           13 MRKRILHFALEGNALKAIELTEEL-AQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLED   91 (172)
Q Consensus        13 ~R~~I~~~I~~G~i~~Ai~~i~~~-~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~   91 (172)
                      +-+...+++++|+|+.++..+... ++. ........|.+.+|.|+|.++.|++..|+...|..+.+..   .-.+.+.+
T Consensus        52 t~klf~q~vlqg~w~q~v~~~~~i~~~d-e~~~~ea~fLv~kQ~fLEf~k~~~is~al~~l~~~~~~lr---~~~kk~~e  127 (519)
T KOG0293|consen   52 TTKLFDQQVLQGQWDQQVMSLVRISFED-ERNRKEAMFLVNKQIFLEFLKTGSISHALPVLRNPVLYLR---KNKKKFHE  127 (519)
T ss_pred             hHHHHHHHHHcccHHHHHHHHhhccCcc-hhhhHHHHHHHHHHHHHHHHhhccHhhhhHhhhcchhhhh---hhHHHHHH
Confidence            345678999999999999888877 554 5566789999999999999999999999999997665553   23456677


Q ss_pred             HHhHhcccCCCCC-cc-hhcCCHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHHH
Q 030744           92 FMALLAYEEPEKS-PM-FHLLSLEYRQHVADNLNRAILAHAERPRYAAMERLIQQTTAVRQCLSQ  154 (172)
Q Consensus        92 ~~~LLay~~~~~s-p~-~~ll~~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~~~~~~~~l~~  154 (172)
                      +.+.|.+++...+ .. ..-.....|.+|.+++...|-...-+| +-+||++++|+...+..-..
T Consensus       128 l~~sll~sn~~~~ne~~~~~~~~n~R~~ll~elskyi~p~illP-~rRLehLl~qAv~~Q~d~cv  191 (519)
T KOG0293|consen  128 LASSLLVSNDQFSNEENTTAQLNNERDKLLDELSKYIPPNILLP-KRRLEHLLEQAVKYQRDSCV  191 (519)
T ss_pred             HHHHHhccccccccccchhhhhchhHHHHHHHHHhhCCHhhcCC-hHHHHHHHHHHHHHHHhHhH
Confidence            7777788764322 11 112233568899999999999988885 69999999999876544433

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=89.34  E-value=2.1  Score=26.53  Aligned_cols=60  Identities=22%  Similarity=0.117  Sum_probs=37.3

Q ss_pred             HHHcCCHHHHHHHHHHhcHHHHccCCcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchh
Q 030744           20 FALEGNALKAIELTEELAQDLLEKNKDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQK   84 (172)
Q Consensus        20 ~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~   84 (172)
                      ++..|+++.|++.+++... ....+.++.+.|    -.=+++.|+.++|.....+.+.....++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~-~~p~~~~~~~~l----a~~~~~~g~~~~A~~~l~~~~~~~~~~~~   60 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQ-RNPDNPEARLLL----AQCYLKQGQYDEAEELLERLLKQDPDNPE   60 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHH-HTTTSHHHHHHH----HHHHHHTT-HHHHHHHHHCCHGGGTTHHH
T ss_pred             ChhccCHHHHHHHHHHHHH-HCCCCHHHHHHH----HHHHHHcCCHHHHHHHHHHHHHHCcCHHH
Confidence            5789999999999876531 111223333322    22356889999999999876665543333

...

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=81.72  E-value=17  Score=30.94  Aligned_cols=131  Identities=18%  Similarity=0.261  Sum_probs=87.3

Q ss_pred             hHHHHHHHHHHHHcCCHHHHHHHHHHhcHHHHccCCcceehhh--HHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHH
Q 030744           10 DMEMRKRILHFALEGNALKAIELTEELAQDLLEKNKDLHFDLL--SLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVE   87 (172)
Q Consensus        10 ~~~~R~~I~~~I~~G~i~~Ai~~i~~~~p~ll~~~~~l~F~L~--~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~   87 (172)
                      -...-+.|.+-|.+.+...-++|. +....+-+.++..++.|.  ...++-++-. .+++|+.+-++.++.|.  +.+..
T Consensus       138 ~f~~lK~v~~gI~~k~~~l~iE~~-Qi~gyl~kgdtesel~l~~~~~esl~l~hk-~~~~a~r~c~t~~a~f~--~kh~~  213 (396)
T COG5109         138 GFVKLKKVISGISEKSTFLLIEFL-QIEGYLSKGDTESELELYLVSHESLLLIHK-RYDEALRLCFTKLASFV--PKHIQ  213 (396)
T ss_pred             HHHHHHHHHHhhccchhHhHHHHH-HhcCccccCCchhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH--HHhcc
Confidence            344455666777778888888888 444444444444444444  4444444443 89999999999999988  66777


Q ss_pred             HHHHHHhHhcccCC------CC-C--cchhcCC--------------HHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHH
Q 030744           88 KLEDFMALLAYEEP------EK-S--PMFHLLS--------------LEYRQHVADNLNRAILAHAERPRYAAMERLIQQ  144 (172)
Q Consensus        88 ~l~~~~~LLay~~~------~~-s--p~~~ll~--------------~~~r~~la~~vn~aIL~~~g~~~~s~Le~l~~~  144 (172)
                      .++..|-.+.+-+.      ++ +  ...+++.              ..-|..+-+.+-+-.+...|++-.|+|..++..
T Consensus       214 dv~~~~~~l~nap~dcfrhrekelmqnI~~~l~ksligqPiEdIDkvnk~~k~l~~lF~~eycaa~gm~~~spL~~~v~t  293 (396)
T COG5109         214 DVKPLLRFLVNAPTDCFRHREKELMQNIQEALKKSLIGQPIEDIDKVNKSRKKLIELFKSEYCAANGMPNRSPLRELVET  293 (396)
T ss_pred             chHHHHHHHHcCchHHhhhcchhHHHHHHHHHHHhhcCCcHHHHHHhhhhHHHHHHHHHHHHHHhcCCCccChHHHHHHh
Confidence            77777776666321      11 0  0111111              135788888999999999999999999988875

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 3e-04
 Identities = 20/140 (14%), Positives = 46/140 (32%), Gaps = 32/140 (22%)

Query: 6   NCLEDMEMRKRILHFAL--EG-----NALKAI--ELTEELAQDLLEK-------NKDLHF 49
           N LE  E RK     ++           L  I  ++ +     ++ K        K    
Sbjct: 364 NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE 423

Query: 50  DLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMAL---------LAY-- 98
             +S+  + L    K        ++ +  +   + +    +D +           + +  
Sbjct: 424 STISIPSIYLELKVKLENEYALHRSIVDHYNIPKTF--DSDDLIPPYLDQYFYSHIGHHL 481

Query: 99  ---EEPEKSPMFHLLSLEYR 115
              E PE+  +F ++ L++R
Sbjct: 482 KNIEHPERMTLFRMVFLDFR 501

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	88.72

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=88.72  E-value=0.38  Score=35.25  Aligned_cols=98  Identities=14%  Similarity=0.203  Sum_probs=67.8

Q ss_pred             CcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHHHHhHhcccCCCCCcchh-cCCHHHHHHHHHHHH
Q 030744           45 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMFH-LLSLEYRQHVADNLN  123 (172)
Q Consensus        45 ~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~~-ll~~~~r~~la~~vn  123 (172)
                      ..+.|=+-+.=|++||.+|...+|-.|-.++-..+.  +.+.+.++.+.++.--....+.++.. +-+...+-.+.....
T Consensus        50 ~~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~--~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~  127 (156)
T 2nxp_A           50 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY  127 (156)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhH--HHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHH
Confidence            467888999999999999999999999998766664  56778888887554433334555443 334445555666666


Q ss_pred             HHHHHhcCCCCchHHHHHHHH
Q 030744          124 RAILAHAERPRYAAMERLIQQ  144 (172)
Q Consensus       124 ~aIL~~~g~~~~s~Le~l~~~  144 (172)
                      ..++.++.....+.|-.++++
T Consensus       128 ~lL~~fL~~~~~~~ll~Iin~  148 (156)
T 2nxp_A          128 QLLKRHLQEKQNNQIWNIVQE  148 (156)
T ss_dssp             HHHHHHHTTSTTCHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHHHHH
Confidence            666677655566666666653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	89.59

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.59  E-value=0.13  Score=35.75  Aligned_cols=97  Identities=14%  Similarity=0.207  Sum_probs=67.7

Q ss_pred             CcceehhhHHHHHHHHhhcChHHHHHHHHhhccCcCCchhhHHHHHHHHhHhcccCCCCCcch-hcCCHHHHHHHHHHHH
Q 030744           45 KDLHFDLLSLHFVELVCSRKCTEALEFAQTKLTPFGKVQKYVEKLEDFMALLAYEEPEKSPMF-HLLSLEYRQHVADNLN  123 (172)
Q Consensus        45 ~~l~F~L~~q~fIELir~~~~~eAi~~ar~~l~~~~~~~~~~~~l~~~~~LLay~~~~~sp~~-~ll~~~~r~~la~~vn  123 (172)
                      ..+.|=+.+.=|++||.+|...+|..|-.+.-..+.  +.+.+.|+.+.++---.+-.+.|.. .+-+.+.+-.+....-
T Consensus        43 ~~lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~--~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~  120 (149)
T d2nxpa1          43 SQLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQE--CYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSY  120 (149)
T ss_dssp             GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSC--GGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHH
T ss_pred             HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhh--HHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHH
Confidence            357888888999999999999999999998655554  6778888888855444443444543 3444455556666666


Q ss_pred             HHHHHhcCCCCchHHHHHHH
Q 030744          124 RAILAHAERPRYAAMERLIQ  143 (172)
Q Consensus       124 ~aIL~~~g~~~~s~Le~l~~  143 (172)
                      ..++.++.-...+.+-.+++
T Consensus       121 ~lLl~~L~~~~~~~il~Ii~  140 (149)
T d2nxpa1         121 QLLKRHLQEKQNNQIWNIVQ  140 (149)
T ss_dssp             HHHHHHHTTSTTCHHHHHHH
T ss_pred             HHHHHHHHhCCChHHHHHHH
Confidence            77777765555666666665