Citrus Sinensis ID: 030748

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170--
Protein Sequence
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Secondary Structure (PSIPRED)
ccccccEEEEEcccccccEEHHHHcccHHHHHHHHcccccccEEEEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccEEEEEEEcccccEEEEEccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mvrgktqmrrIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIifsprgklseFASSRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRleekcgmenwqgskeqpenltnddgastsdvetelfigppperrarrlaippqn
Flexible Loop (DISEMBL)
mvrgktqmrrienatsrqvtfskrrnGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIaqlkekgkvlEAENTRleekcgmenwqgskeqpenltnddgastsdvetelfigppperrarrlaippqn
Low Complexity Region (SEG)
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTleelqqierqleKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Disordered region (IsUnstruct)
************************RNGLLKKAFELSVLCDAEVAVIIF****************************************************************************************************************************
Disordered Region (DISOPRED)
**RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTLEELQQI*********NIRARKNQVFNEQIAQLKEKGKVLEAENTRLE*********************************F******************
Disordered Region (DISEMBL)
******************VTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Disordered Region (DISPRO)
*****TQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN************************************RR*******
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRKLLGEGLASCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	172	2.2.26 [Sep-21-2011]
O64645	214	MADS-box protein SOC1 OS=	yes	no	0.941	0.757	0.525	9e-47
O82743	219	Agamous-like MADS-box pro	no	no	0.941	0.739	0.458	2e-41
Q9XJ60	230	MADS-box transcription fa	yes	no	0.924	0.691	0.463	1e-40
Q38838	221	Agamous-like MADS-box pro	no	no	0.988	0.769	0.457	8e-39
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.947	0.699	0.420	2e-36
P0C5B2	233	MADS-box transcription fa	no	no	0.947	0.699	0.411	1e-34
Q6EU39	250	MADS-box transcription fa	no	no	0.930	0.64	0.388	1e-28
Q0D4T4	249	MADS-box transcription fa	no	no	0.924	0.638	0.379	3e-28
A2YNI2	249	MADS-box transcription fa	N/A	no	0.924	0.638	0.379	3e-28
Q10PZ9	257	MADS-box transcription fa	no	no	0.953	0.638	0.367	1e-27

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score =  186 bits (471), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 112/213 (52%), Positives = 132/213 (61%), Gaps = 51/213 (23%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFSP+GKL EFASS
Sbjct: 1   MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RKLLGEG+ +C+
Sbjct: 61  NMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGIGTCS 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG---MENWQ 129
           +EELQQIE+QLEKSV  IRARK QVF EQI QLK+K K L AEN +L EK G    E W 
Sbjct: 121 IEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHESEVWS 180

Query: 130 GSKEQPENLTNDDGASTSDVETELFIGPPPERR 162
              ++     +++ + +S+VET+LFIG P   R
Sbjct: 181 NKNQESTGRGDEESSPSSEVETQLFIGLPCSSR 213

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score =  167 bits (424), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 105/229 (45%), Positives = 131/229 (57%), Gaps = 67/229 (29%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA++IFSPR KL EF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

Query: 61  -----------------------------------------------RKLLGEGLASCTL 73
                                                          RKLLGEG+ +C++
Sbjct: 61  SIAATIERYQRRIKEIGNNHKRNDNSQQARDETSGLTKKIEQLEISKRKLLGEGIDACSI 120

Query: 74  EELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQG--- 130
           EELQQ+E QL++S+S IRA+K Q+  E+I +LK + + L  EN  L+EK     W G   
Sbjct: 121 EELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK-----WLGMGT 175

Query: 131 -------SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 172
                  S      +  DD     +VET LFIGPP  R++++   PPQN
Sbjct: 176 ATIASSQSTLSSSEVNIDDNM---EVETGLFIGPPETRQSKKF--PPQN 219

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1

 Score =  165 bits (418), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 102/220 (46%), Positives = 124/220 (56%), Gaps = 61/220 (27%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQM+RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFAS+
Sbjct: 1   MVRGKTQMKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASA 60

Query: 61  -----------------------------------------------RKLLGEGLASCTL 73
                                                          RKLLGE L  C++
Sbjct: 61  STQKTIERYRTYTKENIGNKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKLDECSI 120

Query: 74  EELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME------- 126
           EEL  +E +LE+S+ +IR RK ++  EQ+A+L+EK   L  +N  L EKC  +       
Sbjct: 121 EELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPPLSAPL 180

Query: 127 NWQGSKEQPE---NLTNDDGASTSDVETELFIGPPPERRA 163
             +   E P+   N TND+     DVETELFIG P   R+
Sbjct: 181 TVRAEDENPDRNINTTNDN----MDVETELFIGLPGRSRS 216

Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score =  159 bits (402), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 102/223 (45%), Positives = 128/223 (57%), Gaps = 53/223 (23%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+IIFSPRGKL EF+SS
Sbjct: 1   MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RK++GEGL + +
Sbjct: 61  SSIPKTVERYQKRIQDLGSNHKRNDNSQQSKDETYGLARKIEHLEISTRKMMGEGLDASS 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 132
           +EELQQ+E QL++S+  IRA+K Q+  E+  +LKEK + L AEN  L EKC M+      
Sbjct: 121 IEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIG 180

Query: 133 EQPENLTN---DDGASTSDVETELFIGPPPERRARRLAIPPQN 172
               + +    D   +  +V T+LFIGPP  R  ++   PP N
Sbjct: 181 RISSSSSTSELDIDDNEMEVVTDLFIGPPETRHFKKF--PPSN 221

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score =  151 bits (382), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/226 (42%), Positives = 121/226 (53%), Gaps = 63/226 (27%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRG+T+++RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRG+L EFAS+
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RK+LGE L  C+
Sbjct: 61  PSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCS 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL--EAENTR-----LEEKCGM 125
           +EEL+ +E +LEKS+ NIR +K ++   QIA+LKEK + L  + EN R     LE    +
Sbjct: 121 IEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAALV 180

Query: 126 ENWQGSKEQPENLTND--------DGASTSDVETELFIGPPPERRA 163
            N   +   P     D          A   DVET+L+IG P   R+
Sbjct: 181 ANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLPGTERS 226

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score =  145 bits (367), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 93/226 (41%), Positives = 120/226 (53%), Gaps = 63/226 (27%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRG+T+++RIEN TSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRG+L EFAS+
Sbjct: 1   MVRGRTELKRIENPTSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGRLYEFASA 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RK+LGE L   +
Sbjct: 61  PSLQKTIDRYKAYTKDHVNNKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFS 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL--EAENTR-----LEEKCGM 125
           +EEL+ +E +LEKS+  IR +K ++  +QIA+LKEK + L  + EN R     LE    +
Sbjct: 121 IEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALV 180

Query: 126 ENWQGSKEQPENLTND--------DGASTSDVETELFIGPPPERRA 163
            N   +   P     D          A   DVET+L+IG P   R+
Sbjct: 181 ANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLPGTERS 226

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6EU39|MADS6_ORYSJ MADS-box transcription factor 6 OS=Oryza sativa subsp. japonica GN=MADS6 PE=1 SV=1

 Score =  125 bits (314), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 82/211 (38%), Positives = 109/211 (51%), Gaps = 51/211 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           M RG+ +++RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+
Sbjct: 1   MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

Query: 61  -----------------------------------------------RKLLGEGLASCTL 73
                                                          R LLGE L   ++
Sbjct: 61  GITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGEDLGPLSV 120

Query: 74  EELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKE 133
           +ELQQ+E+QLE ++S  R RK Q+  EQ+ +L+ K + L   N +L+ K  +E   GS  
Sbjct: 121 KELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVE---GSTS 177

Query: 134 QPENLTNDDGASTSDVET-ELFIGPPPERRA 163
               +     A  + VE    ++ PPP   A
Sbjct: 178 NYRAMQQASWAQGAVVENGAAYVQPPPHSAA 208

Probable transcription factor. Regulates floral organ identity and floral meristem determinacy. May be involved in the control of flowering time.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q0D4T4|MAD18_ORYSJ MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 109/208 (52%), Gaps = 49/208 (23%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S 
Sbjct: 1   MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query: 61  -------------------------------------------------RKLLGEGLASC 71
                                                            R+LLGE L + 
Sbjct: 61  SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTL 120

Query: 72  TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 131
           T++ELQQ+E QLE S+ +IR++KNQ+  E I++L++K K L+ +N  L++    E  + +
Sbjct: 121 TIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNN 180

Query: 132 KEQPENLTNDDGASTSDVETELFIGPPP 159
                N    +GA+ S         P P
Sbjct: 181 AIINTNREEQNGATPSTSSPTPVTAPDP 208

Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YNI2|MAD18_ORYSI MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2

 Score =  124 bits (311), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 79/208 (37%), Positives = 109/208 (52%), Gaps = 49/208 (23%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S 
Sbjct: 1   MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query: 61  -------------------------------------------------RKLLGEGLASC 71
                                                            R+LLGE L + 
Sbjct: 61  SSMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTL 120

Query: 72  TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 131
           T++ELQQ+E QLE S+ +IR++KNQ+  E I++L++K K L+ +N  L++    E  + +
Sbjct: 121 TIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNN 180

Query: 132 KEQPENLTNDDGASTSDVETELFIGPPP 159
                N    +GA+ S         P P
Sbjct: 181 AIINTNREEQNGATPSTSSPTPVTAPDP 208

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q10PZ9|MADS1_ORYSJ MADS-box transcription factor 1 OS=Oryza sativa subsp. japonica GN=MADS1 PE=1 SV=1

 Score =  122 bits (306), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 82/223 (36%), Positives = 112/223 (50%), Gaps = 59/223 (26%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           M RGK +++RIEN  SRQVTF+KRRNGLLKKA+ELS+LCDAEVA+IIFS RG+L EF+SS
Sbjct: 1   MGRGKVELKRIENKISRQVTFAKRRNGLLKKAYELSLLCDAEVALIIFSGRGRLFEFSSS 60

Query: 61  ----------------------------------------------RKLLGEGLASCTLE 74
                                                         R +LGE L   +++
Sbjct: 61  SCMYKTLERYRSCNYNSQDAAAPENEINYQEYLKLKTRVEFLQTTQRNILGEDLGPLSMK 120

Query: 75  ELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQ 134
           EL+Q+E Q+E S+  IR+RKNQ   +Q+  LK K + L+  N  L +K      + S E 
Sbjct: 121 ELEQLENQIEVSLKQIRSRKNQALLDQLFDLKSKEQQLQDLNKDLRKKLQ----ETSAEN 176

Query: 135 PENLTNDDGASTSDVETEL---------FIGPPPERRARRLAI 168
             +++  DG   S   T L          + P P++    L I
Sbjct: 177 VLHMSWQDGGGHSGSSTVLADQPHHHQGLLHPHPDQGDHSLQI 219

Probable transcription factor involved in the development of floral organs. Required for the formation of inner floral organs (lodicules, stamens and carpels, or whorls 2, 3 and 4) and the lemma and palea (whorl 1), which are grass floral organs analogous to sepals. May be involved in the control of flowering time. Seems to act as transcriptional activator. May act upstream of the auxin-responsive protein GH3.8.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
154720967	220	SOC1-like protein 1 [Citrus sinensis]	1.0	0.781	0.781	5e-88
346214861	221	SOC1-like protein [Spiraea cantoniensis]	0.959	0.746	0.588	1e-57
109627813	220	MADS box transcription factor 5 [Populus	0.982	0.768	0.578	3e-57
444230588	215	SOC1 [Prunus salicina]	0.953	0.762	0.601	3e-57
31295609	220	MADS-box protein PTM5 [Populus tremuloid	0.982	0.768	0.573	1e-56
226291977	214	SOC1 [Prunus armeniaca] gi|444230590|gb|	0.947	0.761	0.595	2e-56
333408629	219	MADS-box protein [Betula platyphylla]	0.976	0.767	0.569	9e-56
224130078	219	MIKC mads-box transcription factor PTM5	0.976	0.767	0.569	9e-56
346214851	214	SOC1-like protein [Prunus mume]	0.947	0.761	0.590	9e-56
402691613	215	MADS-box protein [Pyrus pyrifolia var. c	0.941	0.753	0.587	3e-55

>gi|154720967|gb|ABS84659.1| SOC1-like protein 1 [Citrus sinensis]

 Score =  328 bits (841), Expect = 5e-88,   Method: Compositional matrix adjust.
 Identities = 172/220 (78%), Positives = 172/220 (78%), Gaps = 48/220 (21%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RKLLGEGLASCT
Sbjct: 61  SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 132
           LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK
Sbjct: 121 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 180

Query: 133 EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 172
           EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Sbjct: 181 EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346214861|gb|AEO20234.1| SOC1-like protein [Spiraea cantoniensis]

 Score =  227 bits (578), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 130/221 (58%), Positives = 145/221 (65%), Gaps = 56/221 (25%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  --------------------------------------------------RKLLGEGLAS 70
                                                             RKLLGEGLAS
Sbjct: 61  SMQTTIERYQKHAKDNQTNNKSVASEQNTQHLRQEASRMMKQIEILEGSKRKLLGEGLAS 120

Query: 71  CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG----ME 126
           C+LEELQ++E QLEKSV+++RARK+QVF E I QLKEK K+L AEN RL EKCG    M+
Sbjct: 121 CSLEELQELEHQLEKSVTSVRARKDQVFKELIEQLKEKEKMLAAENVRLMEKCGSIQQMQ 180

Query: 127 NW--QGSKEQPENLTNDDGASTSDVETELFIGPPPERRARR 165
               Q S EQ E+L   D + +SDVETELFIG PPERRA+R
Sbjct: 181 AGAPQTSNEQREHLPYADSSPSSDVETELFIGMPPERRAKR 221

Source: Spiraea cantoniensis

Species: Spiraea cantoniensis

Genus: Spiraea

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109627813|gb|ABG34340.1| MADS box transcription factor 5 [Populus tomentosa]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 129/223 (57%), Positives = 145/223 (65%), Gaps = 54/223 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RKLLGE L SCT
Sbjct: 61  SMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 132
           +EELQQIE QLE+SVS IRARKNQVF EQI  LK+K K+L AENTRL ++CG ++W  S 
Sbjct: 121 IEELQQIEHQLERSVSTIRARKNQVFKEQIELLKQKEKLLAAENTRLSDECGAQSWPVSW 180

Query: 133 EQPENLTND---DGASTSDVETELFIGPPPERRARRLAIPPQN 172
           EQ ++L  +   + +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQRDDLPREEQRESSSISDVETELFIGPPETRTKR---IPPRN 220

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444230588|gb|AGD88523.1| SOC1 [Prunus salicina]

 Score =  226 bits (576), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 130/216 (60%), Positives = 143/216 (66%), Gaps = 52/216 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  --------------------------------------------------RKLLGEGLAS 70
                                                             RKLLGEGL S
Sbjct: 61  SMQTTIERYQKHAKDNHTNNKPVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGS 120

Query: 71  CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQ 129
           CT+EELQ+IE+QLE+SVSN+RARK QVF EQI QLKEKGK L AEN RL EKCG ++  Q
Sbjct: 121 CTIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLKEKGKALAAENERLIEKCGRIQPRQ 180

Query: 130 GSKEQPENLTNDDGASTSDVETELFIGPPPERRARR 165
            S EQ ENL   + + +SDVETELFIG  PERR +R
Sbjct: 181 ASNEQRENLAYIESSPSSDVETELFIG-LPERRMKR 215

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31295609|gb|AAP46287.1|AF377868_1 MADS-box protein PTM5 [Populus tremuloides]

 Score =  224 bits (570), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 128/223 (57%), Positives = 145/223 (65%), Gaps = 54/223 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFASS 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RKLLGE L SCT
Sbjct: 61  SMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 132
           +EELQQIE+QLE+SVS IRARKNQVF EQI  LK+K K+L AEN RL ++CG ++W  S 
Sbjct: 121 IEELQQIEQQLERSVSTIRARKNQVFKEQIELLKQKEKLLAAENARLSDECGAQSWPVSW 180

Query: 133 EQPENLTND---DGASTSDVETELFIGPPPERRARRLAIPPQN 172
           EQ ++L  +   + +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQRDDLPREEQRESSSISDVETELFIGPPETRTKR---IPPRN 220

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226291977|gb|ACO40488.1| SOC1 [Prunus armeniaca] gi|444230590|gb|AGD88524.1| SOC1 [Prunus armeniaca]

 Score =  223 bits (568), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/215 (59%), Positives = 142/215 (66%), Gaps = 52/215 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  --------------------------------------------------RKLLGEGLAS 70
                                                             RKLLGEGL S
Sbjct: 61  SMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIEFLEISKRKLLGEGLGS 120

Query: 71  CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQ 129
           C++EELQ+IE+QLE+SVSN+RARK QVF EQI QL+EKGK L AEN RL EKCG ++  Q
Sbjct: 121 CSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENERLIEKCGRIQPRQ 180

Query: 130 GSKEQPENLTNDDGASTSDVETELFIGPPPERRAR 164
            S EQ ENL   + + +SDVETELFIG  PERR R
Sbjct: 181 ASNEQRENLAYTESSPSSDVETELFIG-LPERRKR 214

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|333408629|gb|AEF32135.1| MADS-box protein [Betula platyphylla]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 145/223 (65%), Gaps = 55/223 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFAS+
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAST 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RKLLGE L SCT
Sbjct: 61  SMQEAIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 132
           +EELQQIE+QLE+SVS IRARKNQVF EQI  L++K K+L AEN RL ++CG ++W  S+
Sbjct: 121 VEELQQIEQQLERSVSTIRARKNQVFKEQIELLRQKEKLLAAENARLSDECGAQSWPVSR 180

Query: 133 EQPENLTNDD---GASTSDVETELFIGPPPERRARRLAIPPQN 172
           EQ  +L  +D    +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQ-RDLPREDLRESSSISDVETELFIGPPETRTKR---IPPRN 219

Source: Betula platyphylla

Species: Betula platyphylla

Genus: Betula

Family: Betulaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130078|ref|XP_002320747.1| MIKC mads-box transcription factor PTM5 [Populus trichocarpa] gi|222861520|gb|EEE99062.1| MIKC mads-box transcription factor PTM5 [Populus trichocarpa]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/223 (56%), Positives = 145/223 (65%), Gaps = 55/223 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+I+FSPRGKL EFAS+
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIVFSPRGKLYEFAST 60

Query: 61  ------------------------------------------------RKLLGEGLASCT 72
                                                           RKLLGE L SCT
Sbjct: 61  SMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECLGSCT 120

Query: 73  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 132
           +EELQQIE+QLE+SVS IRARKNQVF EQI  L++K K+L AEN RL ++CG ++W  S+
Sbjct: 121 VEELQQIEQQLERSVSTIRARKNQVFKEQIELLRQKEKLLAAENARLSDECGAQSWPVSR 180

Query: 133 EQPENLTNDD---GASTSDVETELFIGPPPERRARRLAIPPQN 172
           EQ  +L  +D    +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 181 EQ-RDLPREDLRESSSISDVETELFIGPPETRTKR---IPPRN 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346214851|gb|AEO20229.1| SOC1-like protein [Prunus mume]

 Score =  221 bits (563), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/215 (59%), Positives = 142/215 (66%), Gaps = 52/215 (24%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEVA+IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVALIIFSPRGKLYEFASS 60

Query: 61  --------------------------------------------------RKLLGEGLAS 70
                                                             RKLLGEGL S
Sbjct: 61  SMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGEGLGS 120

Query: 71  CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQ 129
           C++EELQ+IE+QLE+SVSN+RARK QVF EQI QL+EKGK L AEN +L EKCG ++  Q
Sbjct: 121 CSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENEKLIEKCGRIQPRQ 180

Query: 130 GSKEQPENLTNDDGASTSDVETELFIGPPPERRAR 164
            S EQ ENL   + + +SDVETELFIG  PERR R
Sbjct: 181 ASNEQRENLAFTESSPSSDVETELFIG-LPERRKR 214

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|402691613|dbj|BAK18785.2| MADS-box protein [Pyrus pyrifolia var. culta]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 128/218 (58%), Positives = 144/218 (66%), Gaps = 56/218 (25%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           MVRGKTQMRRIENATSRQVTFSKRR+GLLKKAFELSVLCDAEV++IIFSPRGKL EFASS
Sbjct: 1   MVRGKTQMRRIENATSRQVTFSKRRSGLLKKAFELSVLCDAEVSLIIFSPRGKLFEFASS 60

Query: 61  --------------------------------------------------RKLLGEGLAS 70
                                                             RKLLGEGL S
Sbjct: 61  SMQGTIERYQKHAKGNQTSNKSSSSEQNMQHLKQKATSMMKQLELLEVSKRKLLGEGLES 120

Query: 71  CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQG 130
           CTL ELQ+IE QLEKSV+N+RARK+QVF EQI QL+EK K+L+AE  RL EKCG  ++Q 
Sbjct: 121 CTLAELQEIEHQLEKSVNNVRARKSQVFKEQIEQLREKEKLLKAETARLVEKCG--SFQP 178

Query: 131 SK---EQPENLTNDDGASTSDVETELFIGPPPERRARR 165
            K   E+ EN T  D +++SDVETELFIG PPE RARR
Sbjct: 179 RKTLDERRENRTYTDSSTSSDVETELFIG-PPESRARR 215

Source: Pyrus pyrifolia var. culta

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	172
UNIPROTKB|Q9ATE9	216	FBP20 "MADS-box transcription	0.348	0.277	0.883	9.7e-46
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.348	0.280	0.916	6.7e-45
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.348	0.279	0.916	5.2e-43
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.366	0.285	0.873	4e-39
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.348	0.273	0.883	6.5e-39
TAIR|locus:505006709	210	AGL42 "AGAMOUS-like 42" [Arabi	0.348	0.285	0.783	1.3e-36
TAIR|locus:2165386	211	AGL72 "AGAMOUS-like 72" [Arabi	0.348	0.284	0.733	7.6e-29
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.377	0.261	0.676	4.5e-27
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	0.418	0.289	0.648	1.2e-26
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.348	0.24	0.75	1.9e-26

UNIPROTKB|Q9ATE9 FBP20 "MADS-box transcription factor FBP20" [Petunia x hybrida (taxid:4102)]

 Score = 265 (98.3 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
 Identities = 53/60 (88%), Positives = 57/60 (95%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDA+V ++IFSPRGK  EF+SS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAQVGLVIFSPRGKQYEFSSS 60

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 273 (101.2 bits), Expect = 6.7e-45, Sum P(2) = 6.7e-45
 Identities = 55/60 (91%), Positives = 59/60 (98%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKTQM+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFSP+GKL EFASS
Sbjct:     1 MVRGKTQMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSPKGKLYEFASS 60

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 268 (99.4 bits), Expect = 5.2e-43, Sum P(2) = 5.2e-43
 Identities = 55/60 (91%), Positives = 58/60 (96%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEV++IIFS RGKL EF+SS
Sbjct:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVSLIIFSTRGKLYEFSSS 60

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 4.0e-39, Sum P(2) = 4.0e-39
 Identities = 55/63 (87%), Positives = 60/63 (95%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA+IIFSPRGKL EF+SS
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALIIFSPRGKLYEFSSS 60

Query:    61 RKL 63
               +
Sbjct:    61 SSI 63

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 266 (98.7 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
 Identities = 53/60 (88%), Positives = 58/60 (96%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGKT+M+RIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVA++IFSPR KL EF+SS
Sbjct:     1 MVRGKTEMKRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVALVIFSPRSKLYEFSSS 60

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:505006709 AGL42 "AGAMOUS-like 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 241 (89.9 bits), Expect = 1.3e-36, Sum P(2) = 1.3e-36
 Identities = 47/60 (78%), Positives = 57/60 (95%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGK +M++IENATSRQVTFSKRRNGLLKKA+ELSVLCDA++++IIFS RG+L EF+SS
Sbjct:     1 MVRGKIEMKKIENATSRQVTFSKRRNGLLKKAYELSVLCDAQLSLIIFSQRGRLYEFSSS 60

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009838 "abscission" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0080187 "floral organ senescence" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2165386 AGL72 "AGAMOUS-like 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 222 (83.2 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 44/60 (73%), Positives = 53/60 (88%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             MVRGK ++++IEN TSRQVTFSKRR+GL KKA ELSVLCDA+VA +IFS +G+L EFASS
Sbjct:     1 MVRGKIEIKKIENVTSRQVTFSKRRSGLFKKAHELSVLCDAQVAAMIFSQKGRLYEFASS 60

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 219 (82.2 bits), Expect = 4.5e-27, Sum P(2) = 4.5e-27
 Identities = 44/65 (67%), Positives = 53/65 (81%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             M RG  Q+RRIEN  +RQVTFSKRRNGLLKKA E+SVLCDA+VA+I+FS +GKL EF+S 
Sbjct:     1 MGRGPVQLRRIENKINRQVTFSKRRNGLLKKAHEISVLCDADVALIVFSTKGKLYEFSSH 60

Query:    61 RKLLG 65
               + G
Sbjct:    61 SSMEG 65

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 228 (85.3 bits), Expect = 1.2e-26, Sum P(2) = 1.2e-26
 Identities = 48/74 (64%), Positives = 59/74 (79%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             M RG+ +++RIEN  +RQVTF+KRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF SS
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCSS 60

Query:    61 RKLLG--EGLASCT 72
               ++   E   SC+
Sbjct:    61 SSMVKTLEKYHSCS 74

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 226 (84.6 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 45/60 (75%), Positives = 53/60 (88%)

Query:     1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
             M RG+ +++RIEN  +RQVTFSKRRNGLLKKA+ELSVLCDAEVA+IIFS RGKL EF S+
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSA 60

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64645	SOC1_ARATH	No assigned EC number	0.5258	0.9418	0.7570	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: MADS5 MIKC mads-box transcription factor SOC1 (221 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	172
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	6e-37
smart00432	59	smart00432, MADS, MADS domain	1e-32
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	6e-32
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	4e-26
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	1e-23
pfam01486	100	pfam01486, K-box, K-box region	2e-17
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	3e-09

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  121 bits (307), Expect = 6e-37
 Identities = 45/58 (77%), Positives = 52/58 (89%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          RGK +++RIEN+T+RQVTFSKRRNGLLKKA ELSVLCDAEVA+IIFS  GKL EF+S 
Sbjct: 2  RGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP 59

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  110 bits (278), Expect = 1e-32
 Identities = 44/58 (75%), Positives = 50/58 (86%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K +++RIEN T+RQVTFSKRRNGL KKA ELSVLCDAEVA+I+FSP GKL EFAS 
Sbjct: 2  RRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP 59

Length = 59

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  108 bits (273), Expect = 6e-32
 Identities = 47/58 (81%), Positives = 51/58 (87%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          RGK +++RIEN TSRQVTFSKRRNGL KKA ELSVLCDAEVAVI+FSP GKL EF SS
Sbjct: 2  RGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 94.6 bits (236), Expect = 4e-26
 Identities = 37/59 (62%), Positives = 42/59 (71%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSR 61
          R K +++RIEN   R VTFSKRR GL KKA ELS LC AEVAVI++SP GKL  F  S 
Sbjct: 2  RKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 87.4 bits (217), Expect = 1e-23
 Identities = 39/51 (76%), Positives = 45/51 (88%)

Query: 9  RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS 59
          +RIEN ++RQVTFSKRRNG+ KKA ELSVLCDAEVAVIIFS  GKL E++S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 72.6 bits (179), Expect = 2e-17
 Identities = 30/62 (48%), Positives = 45/62 (72%)

Query: 61  RKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE 120
           R LLGE L S +L+ELQQ+E+QLE  + +IR+RKN++   QI +L++K + L+ EN  L 
Sbjct: 36  RHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKNELLLNQIEELQKKERELQEENRNLR 95

Query: 121 EK 122
           +K
Sbjct: 96  QK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 54.3 bits (130), Expect = 3e-09
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query: 1   MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
           +   K  +  I N T R VTFSKR++G+ KKAFELSVL   EV +++ S  G +  F + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	172
KOG0014	195	consensus MADS box transcription factor [Transcrip	99.96
smart00432	59	MADS MADS domain.	99.95
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.94
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.93
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.92
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.9
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.79
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.53
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.41
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.4
PRK15422	79	septal ring assembly protein ZapB; Provisional	89.31
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	89.31
KOG4797	123	consensus Transcriptional regulator [Transcription	88.08
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	86.06
PRK13169	110	DNA replication intiation control protein YabA; Re	85.94
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	84.86
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	84.21
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	82.38

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=99.96  E-value=3e-31  Score=211.13  Aligned_cols=60  Identities=77%  Similarity=1.102  Sum_probs=59.5

Q ss_pred             CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      |||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||+|||||+|++|+||++
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~   60 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSS   60 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCc
Confidence            999999999999999999999999999999999999999999999999999999999997

>smart00432 MADS MADS domain

Probab=99.95  E-value=1.9e-28  Score=162.28  Aligned_cols=59  Identities=75%  Similarity=1.058  Sum_probs=58.2

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|+|+.+|++||+||+.||+|||+|||+||||+||+|||||+|++|.||+|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999986

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.94  E-value=1.3e-27  Score=158.34  Aligned_cols=59  Identities=80%  Similarity=1.078  Sum_probs=57.9

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|+|+..|++||+||+.||+|||+|||+||||+||+|||||+|+++.||+|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            79999999999999999999999999999999999999999999999999999999985

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.93  E-value=2.6e-27  Score=164.79  Aligned_cols=59  Identities=76%  Similarity=1.077  Sum_probs=57.9

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|||+.+|++||+||+.||||||.|||+||||+||+|||||+|++|.|++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s~   59 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSSP   59 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecCC
Confidence            89999999999999999999999999999999999999999999999999999999875

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.92  E-value=2.1e-26  Score=162.31  Aligned_cols=59  Identities=63%  Similarity=0.877  Sum_probs=57.7

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|+|+.+|++||+||+.||||||+||||||||+||+|||||+|+.|.||++
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~   59 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPS   59 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCc
Confidence            89999999999999999999999999999999999999999999999999999999874

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.90  E-value=2.7e-25  Score=143.04  Aligned_cols=51  Identities=63%  Similarity=0.991  Sum_probs=46.8

Q ss_pred             EEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCcccccc
Q 030748            9 RRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFAS   59 (172)
Q Consensus         9 k~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~s   59 (172)
                      |+|+|+..|++||+||+.||+|||.|||+||||+||+|||||+|++|.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            589999999999999999999999999999999999999999999999975

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.79  E-value=2.2e-20  Score=156.80  Aligned_cols=59  Identities=44%  Similarity=0.639  Sum_probs=58.3

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||.||+|.||||+.+|.+||+|||.||||||+|||||+|.+|-|+|.|.+|.+|.|+.|
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTp  121 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATP  121 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccc
Confidence            79999999999999999999999999999999999999999999999999999999998

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.53  E-value=4.2e-14  Score=102.51  Aligned_cols=64  Identities=48%  Similarity=0.728  Sum_probs=62.8

Q ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748           61 RKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG  124 (172)
Q Consensus        61 R~l~GedL~~ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~  124 (172)
                      |++.|+||+++|++||..||++|+.+|.+||.+|++++.++|+.|++|+..|.++|..|+.++.
T Consensus        36 R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   36 RHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLMEQIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             hccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999999999875

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.41  E-value=1.2e-13  Score=120.61  Aligned_cols=60  Identities=43%  Similarity=0.639  Sum_probs=59.2

Q ss_pred             CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      |||+||.|.+|+|+.+|.|||+||+.||+|||.||+||+|.+|.++|.|.+|.++.|+.|
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp  140 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP  140 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCC
Confidence            789999999999999999999999999999999999999999999999999999999998

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.40  E-value=0.42  Score=32.68  Aligned_cols=48  Identities=33%  Similarity=0.495  Sum_probs=32.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748           71 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKC  123 (172)
Q Consensus        71 ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~  123 (172)
                      +|++.+..||..+..++..|..     ++.+++.|+.+...|.++|..|....
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en   48 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEEN   48 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            4788899999999999998865     44556666666555555555554443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=89.31  E-value=2.9  Score=29.16  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748           71 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR  118 (172)
Q Consensus        71 ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~  118 (172)
                      +|++=|..||..+..++..|     .+++-+|+.|+.+...|.+++..
T Consensus         1 MS~EvleqLE~KIqqAvdtI-----~LLqmEieELKekn~~L~~e~~~   43 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   43 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            47788999999999999887     46666777777776666665433

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=89.31  E-value=0.96  Score=29.76  Aligned_cols=29  Identities=41%  Similarity=0.629  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748           96 QVFNEQIAQLKEKGKVLEAENTRLEEKCG  124 (172)
Q Consensus        96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~  124 (172)
                      +.++++|.+|..+...|+.||..|+..+.
T Consensus        17 evLK~~I~eL~~~n~~Le~EN~~Lk~~~~   45 (59)
T PF01166_consen   17 EVLKEQIAELEERNSQLEEENNLLKQNAS   45 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            67889999999999999999999986554

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>KOG4797 consensus Transcriptional regulator [Transcription]

Probab=88.08  E-value=2.6  Score=31.20  Aligned_cols=46  Identities=28%  Similarity=0.505  Sum_probs=29.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748           76 LQQIERQLEKSVSNIRARKN-------QVFNEQIAQLKEKGKVLEAENTRLEE  121 (172)
Q Consensus        76 L~~LE~~Le~~l~~IR~rK~-------~ll~~qi~~lkkk~~~L~eeN~~L~~  121 (172)
                      +..+...++.++.-|+..-|       +.++++|..|.++...|++||..|+.
T Consensus        43 VvaIDNKIeQAMDLVKtHLmfAVREEVe~Lk~qI~eL~er~~~Le~EN~lLk~   95 (123)
T KOG4797|consen   43 VVAIDNKIEQAMDLVKTHLMFAVREEVEVLKEQIRELEERNSALERENSLLKT   95 (123)
T ss_pred             eEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34466777777777777665       45555666666666666666666653

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=86.06  E-value=6  Score=29.01  Aligned_cols=50  Identities=28%  Similarity=0.414  Sum_probs=37.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 030748           73 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN  127 (172)
Q Consensus        73 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~~  127 (172)
                      ++.+..+|++|...+..|..-|     .++..+-++...|+-||..|+.++....
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK-----~~~~~l~EEN~~L~~EN~~Lr~~l~~~~   56 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELK-----KQLQELLEENARLRIENEHLRERLEELE   56 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4667788888888777776544     5555777788888889999998887643

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=85.94  E-value=6.2  Score=29.16  Aligned_cols=49  Identities=29%  Similarity=0.420  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748           73 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME  126 (172)
Q Consensus        73 ~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~  126 (172)
                      ++.+.++|+++...+..+..-|     .++..+-++...|+-||..|+.++...
T Consensus         7 fd~l~~le~~l~~l~~el~~LK-----~~~~el~EEN~~L~iEN~~Lr~~l~~~   55 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALK-----KQLAELLEENTALRLENDKLRERLEEL   55 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            5668888998888877776544     555677788888999999999999864

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=84.86  E-value=8.7  Score=26.31  Aligned_cols=41  Identities=27%  Similarity=0.509  Sum_probs=27.1

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748           71 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAEN  116 (172)
Q Consensus        71 ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN  116 (172)
                      +|++-+..||..+..++..|     .++.-+|+.|++|...|..|-
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~   41 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEV   41 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHH
Confidence            46777888888888888776     355556666666555444433

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=84.21  E-value=1.7  Score=32.02  Aligned_cols=22  Identities=41%  Similarity=0.487  Sum_probs=18.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 030748          104 QLKEKGKVLEAENTRLEEKCGM  125 (172)
Q Consensus       104 ~lkkk~~~L~eeN~~L~~k~~~  125 (172)
                      .++++.+.|+|||..|+.|++.
T Consensus        76 rlkkk~~~LeEENNlLklKiev   97 (108)
T cd07429          76 RLKKKNQQLEEENNLLKLKIEV   97 (108)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            5667888899999999988874

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=82.38  E-value=2.6  Score=27.78  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=23.5

Q ss_pred             cccCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 030748           62 KLLGEGLASCTLEELQQIERQLEKSVSNIRA   92 (172)
Q Consensus        62 ~l~GedL~~ls~~EL~~LE~~Le~~l~~IR~   92 (172)
                      +.+|+||+.+|++||..--..|+.-+.+++.
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999998866666655554443

The function of this family is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	172
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		6e-14
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		7e-14
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		7e-14
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		2e-13
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		2e-13
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		3e-13
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		1e-09
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		1e-07
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		1e-07

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 72.0 bits (175), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/60 (55%), Positives = 47/60 (78%)
Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          M R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   +L ++AS+
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 33/58 (56%), Positives = 46/58 (79%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVL DAE+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST 59

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 32/58 (55%), Positives = 46/58 (79%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   +L ++AS+
Sbjct: 2  RKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 59

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSR 61
          R K +++ IEN T R VTFSKR++G++KKAFELSVL   +V +++ S  G +  F++ +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 52.4 bits (124), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRK 62
          R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA +RK
Sbjct: 12 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRK 70
Query: 63 L 63
          L
Sbjct: 71 L 71

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 1/61 (1%)
Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSRK 62
          R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA +RK
Sbjct: 11 RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRK 69
Query: 63 L 63
          L
Sbjct: 70 L 70

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	172
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	4e-34
1egw_A	77	MADS box transcription enhancer factor 2, polypept	9e-34
1hbx_A	92	SRF, serum response factor; gene regulation, trans	3e-33
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	1e-32
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	5e-32

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  114 bits (288), Expect = 4e-34
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  113 bits (284), Expect = 9e-34
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  112 bits (282), Expect = 3e-33
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
            R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+ 
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 69

Query: 61 R 61
          +
Sbjct: 70 K 70

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  111 bits (279), Expect = 1e-32
 Identities = 27/61 (44%), Positives = 42/61 (68%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
            R K +++ IEN T R VTFSKR++G++KKAFELSVL   +V +++ S  G +  F++ 
Sbjct: 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 75

Query: 61 R 61
          +
Sbjct: 76 K 76

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  109 bits (275), Expect = 5e-32
 Identities = 24/61 (39%), Positives = 37/61 (60%)

Query: 1  MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
            R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+ 
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR 68

Query: 61 R 61
          +
Sbjct: 69 K 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	172
1egw_A	77	MADS box transcription enhancer factor 2, polypept	99.96
1hbx_A	92	SRF, serum response factor; gene regulation, trans	99.96
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	99.96
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	99.96
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	99.96
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	90.99
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	88.03
2w6a_A	63	ARF GTPase-activating protein GIT1; PIX, zinc, sig	84.17
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	82.14
1dh3_A	55	Transcription factor CREB; protein-DNA complex, tr	81.74

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=99.96  E-value=2.8e-31  Score=183.48  Aligned_cols=59  Identities=56%  Similarity=0.862  Sum_probs=57.8

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|||+.+|++||+|||+||||||+||||||||+|||||||++|++|+|+++
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s~   59 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST   59 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCCC
Confidence            89999999999999999999999999999999999999999999999999999999874

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=99.96  E-value=2.8e-31  Score=188.79  Aligned_cols=60  Identities=40%  Similarity=0.584  Sum_probs=59.4

Q ss_pred             CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      |||+||+|++|||+.+|++||+|||.||||||+||||||||+||||||||+|++|+|++|
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s~   69 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR   69 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEECG
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecCC
Confidence            999999999999999999999999999999999999999999999999999999999987

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=99.96  E-value=3.9e-31  Score=190.44  Aligned_cols=60  Identities=45%  Similarity=0.698  Sum_probs=59.2

Q ss_pred             CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      |||+||+|++|||+.+|++||+|||.||||||+||||||||+||||||||+|++|+|++|
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~sp   75 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP   75 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecCC
Confidence            899999999999999999999999999999999999999999999999999999999986

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=99.96  E-value=7.1e-31  Score=190.14  Aligned_cols=60  Identities=40%  Similarity=0.584  Sum_probs=59.3

Q ss_pred             CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      |||+||+|++|||+.+|++||+|||.||||||+||||||||+|||||||++|++|+|++|
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s~   68 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR   68 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEECG
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecCc
Confidence            999999999999999999999999999999999999999999999999999999999987

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=99.96  E-value=1.1e-30  Score=185.07  Aligned_cols=59  Identities=56%  Similarity=0.862  Sum_probs=58.2

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|||+.+|++||+|||.||||||+||||||||+||||||||+|++|+|+||
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s~   59 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST   59 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEESS
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCCC
Confidence            89999999999999999999999999999999999999999999999999999999987

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=90.99  E-value=1.5  Score=29.77  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=31.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748           71 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR  118 (172)
Q Consensus        71 ls~~EL~~LE~~Le~~l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~  118 (172)
                      +|++=|..||..+..++..|     .++..+|+.|+.+...|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68888999999999999887     45556666666666665554444

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=88.03  E-value=3.3  Score=27.57  Aligned_cols=29  Identities=41%  Similarity=0.526  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 030748           96 QVFNEQIAQLKEKGKVLEAENTRLEEKCG  124 (172)
Q Consensus        96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~  124 (172)
                      ++++++|.+|..+...|+.||..|+.-.-
T Consensus        18 evLKe~I~EL~e~~~qLE~EN~~Lk~~as   46 (78)
T 1dip_A           18 EILKEQIRELVEKNSQLERENTLLKTLAS   46 (78)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            67899999999999999999999986554

>2w6a_A ARF GTPase-activating protein GIT1; PIX, zinc, signaling protein, CAT-1, cytoplasm, ANK repeat, coiled-coil, zinc-finger, metal-binding; 1.40A {Rattus norvegicus}

Probab=84.17  E-value=6.2  Score=25.16  Aligned_cols=51  Identities=24%  Similarity=0.406  Sum_probs=40.9

Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 030748           70 SCTLEELQQIERQLEKSVSNIRAR--KNQVFNEQIAQLKEKGKVLEAENTRLE  120 (172)
Q Consensus        70 ~ls~~EL~~LE~~Le~~l~~IR~r--K~~ll~~qi~~lkkk~~~L~eeN~~L~  120 (172)
                      ..++.|...+...|-.+=.+|..-  -+.-+.+++..+++++..|+.||..|+
T Consensus         9 pit~qeylevK~ALaaSeAkiQQLmkVN~~ls~Elr~mQ~~lq~LQsen~~Lr   61 (63)
T 2w6a_A            9 AVTLQEYLELKKALATSEAKVQQLMKVNSSLSDELRKLQREIHKLQAENLQLR   61 (63)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHhhHHHHHHHHHHhHhhhHHHHHHHHHHHHHHhhhhhhc
Confidence            478899999888887777766542  235667888899999999999999887

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=82.14  E-value=3.1  Score=25.82  Aligned_cols=30  Identities=27%  Similarity=0.437  Sum_probs=25.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 030748           96 QVFNEQIAQLKEKGKVLEAENTRLEEKCGM  125 (172)
Q Consensus        96 ~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~  125 (172)
                      +.++.+.+.|+.++..|.+++..|+.++..
T Consensus        22 eaLk~E~~eLk~k~~~L~~~~~el~~~l~~   51 (53)
T 2yy0_A           22 ELLRLELAEMKEKYEAIVEENKKLKAKLAQ   51 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            345677889999999999999999998874

>1dh3_A Transcription factor CREB; protein-DNA complex, transcription/DNA complex; HET: DNA; 3.00A {Mus musculus} SCOP: h.1.3.1

Probab=81.74  E-value=5.1  Score=24.87  Aligned_cols=36  Identities=25%  Similarity=0.293  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 030748           87 VSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME  126 (172)
Q Consensus        87 l~~IR~rK~~ll~~qi~~lkkk~~~L~eeN~~L~~k~~~~  126 (172)
                      -..-|.||...+    +.|..++..|+.||..|..++...
T Consensus        13 A~rSR~RKk~~~----~~LE~~v~~L~~eN~~L~~~~~~L   48 (55)
T 1dh3_A           13 ARESRRKKKEYV----KSLENRVAVLENQNKTLIEELKAL   48 (55)
T ss_dssp             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344566665444    588888999999999999888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	172
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	9e-30
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	1e-28
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	3e-28

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  101 bits (254), Expect = 9e-30
 Identities = 33/58 (56%), Positives = 46/58 (79%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K Q+ RI +  +RQVTF+KR+ GL+KKA+ELSVLCD E+A+IIF+   KL ++AS+
Sbjct: 2  RKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST 59

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 99.4 bits (248), Expect = 1e-28
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASSR 61
          R K +M  I+N   R  TFSKR+ G++KKA+ELS L   +V +++ S  G +  FA+ +
Sbjct: 4  RVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 62

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 98.2 bits (245), Expect = 3e-28
 Identities = 27/58 (46%), Positives = 41/58 (70%)

Query: 3  RGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS 60
          R K +++ IEN T R VTFSKR++G++KKAFELSVL   +V +++ S  G +  F++ 
Sbjct: 4  RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	172
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	99.96
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	99.95
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.95

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=2.1e-31  Score=179.70  Aligned_cols=59  Identities=56%  Similarity=0.862  Sum_probs=57.9

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|||+..|++||+|||.||||||.|||+||||+||+|||||+|++|+|++|
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s~   59 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST   59 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEESS
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeCC
Confidence            89999999999999999999999999999999999999999999999999999999875

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-30  Score=180.79  Aligned_cols=60  Identities=40%  Similarity=0.584  Sum_probs=58.9

Q ss_pred             CCcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            1 MVRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         1 mgr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      +||+||+|++|||+..|++||+|||.||||||+||||||||+||+|||||+|++|+|+||
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s~   61 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATR   61 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEECG
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeCC
Confidence            699999999999999999999999999999999999999999999999999999999986

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.6e-30  Score=177.72  Aligned_cols=59  Identities=46%  Similarity=0.718  Sum_probs=58.2

Q ss_pred             CcccceeEEecCCCCccchhhhhhcchhhhhhhhhcccCCceEEEEecCCCCccccccc
Q 030748            2 VRGKTQMRRIENATSRQVTFSKRRNGLLKKAFELSVLCDAEVAVIIFSPRGKLSEFASS   60 (172)
Q Consensus         2 gr~ki~ik~I~~~~~R~~tf~KR~~Gl~KKa~Els~Lc~~~v~~i~~s~~g~~~~f~sp   60 (172)
                      ||+||+|++|+|+..|++||+||+.||||||.||||||||+||||||||+|++|+|++|
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~sp   61 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTP   61 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEECT
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccCC
Confidence            89999999999999999999999999999999999999999999999999999999986