Citrus Sinensis ID: 030786

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Secondary Structure (PSIPRED)
ccccccHHHccHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEcccEEEEccEEEEccEEEEccEEEEEcccccccccccccHHHHHHcccccEEEEEEccccccccHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHcccEEEEEEccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEEcccccccEEEEEccccEEEEccEEEEEEEEEEcccEEccccccHHHccHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHcccEEEEcccHHHHHHHHHHHHcccEEEEEEEcccccc
Coil and Loop (DISEMBL)
MAVRQRAVTTLPNLMrslrkgspkaapnqplpslrrafslydqinlidnvpedqlrfqgytdtgftvngvqYEGSLLCIGNLllswtpkkfseitpnCLSIFqlvrpipeililgcgryiepvnpELRQFIRSTGMkleaidsrnaastynILNEEGRIVAAALLPYGVSS
Flexible Loop (DISEMBL)
mavrqravttlpnlmrslrkgspkaapnqplpSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Low Complexity Region (SEG)
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Disordered region (IsUnstruct)
***********************************RAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG***
Disordered Region (DISOPRED)
****************************************YDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV**
Disordered Region (DISEMBL)
********TTLPNLMRSLR*********QPLPSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Disordered Region (DISPRO)
*AV**RA****PNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVS*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q6DFN1	183	NADH dehydrogenase [ubiqu	yes	no	0.637	0.595	0.357	7e-16
O08776	185	NADH dehydrogenase [ubiqu	yes	no	0.725	0.670	0.314	5e-14
Q9JKL4	185	NADH dehydrogenase [ubiqu	yes	no	0.725	0.670	0.298	1e-13
Q9BU61	184	NADH dehydrogenase [ubiqu	yes	no	0.725	0.673	0.298	2e-13
Q2HJI2	184	NADH dehydrogenase [ubiqu	yes	no	0.725	0.673	0.298	3e-13
A1L1F1	174	NADH dehydrogenase [ubiqu	yes	no	0.596	0.586	0.323	5e-09
P29962	124	Uncharacterized protein R	yes	no	0.614	0.846	0.294	0.0002

>sp|Q6DFN1|NDUF3_XENTR NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Xenopus tropicalis GN=ndufaf3 PE=2 SV=1

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 63/109 (57%)

Query: 58  QGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCG 117
           + Y+  GF +NG +  G    I   +L W    + +I    LS+F ++ P  EIL++G G
Sbjct: 66  ETYSSQGFIINGDKVVGPCAVIPKAILQWNVGSYKDINLESLSLFHMLSPRIEILVVGTG 125

Query: 118 RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
             +E ++P + +F+R  G+ +E  D+ NA +T+N L  E RI AAAL+P
Sbjct: 126 DRVERLDPNILKFMRQKGVAVEVQDTANACATFNFLVSERRITAAALIP 174

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).
Xenopus tropicalis (taxid: 8364)

>sp|O08776|NDUF3_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Rattus norvegicus GN=Ndufaf3 PE=2 SV=1

 Score = 77.0 bits (188), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/124 (31%), Positives = 66/124 (53%)

Query: 43  QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
           +I+L+ N     +    Y   GFT+NG +  G    +   ++ W      +IT    SIF
Sbjct: 47  RISLLQNEFPQAVYIDSYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIF 106

Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
            ++ P  EI+++G G   E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct: 107 WMLEPRIEIVVVGTGNKTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGA 166

Query: 163 ALLP 166
           AL+P
Sbjct: 167 ALIP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Rattus norvegicus (taxid: 10116)

>sp|Q9JKL4|NDUF3_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Mus musculus GN=Ndufaf3 PE=2 SV=1

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 68/124 (54%)

Query: 43  QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
           +I+L+ +     +    Y+  GFT+ G +  G  + +   ++ W      +IT    S+F
Sbjct: 47  RISLLQSEFPQAVYIDSYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLF 106

Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
            ++ P  EI+++G G   E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct: 107 WMLEPRIEIVVVGTGNKTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 166

Query: 163 ALLP 166
           AL+P
Sbjct: 167 ALIP 170

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Mus musculus (taxid: 10090)

>sp|Q9BU61|NDUF3_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Homo sapiens GN=NDUFAF3 PE=1 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 65/124 (52%)

Query: 43  QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
           +I+L+       +    Y   GF +NG +  G    + + ++ W      +IT +  S+F
Sbjct: 46  RISLLQREAAQAMYIDSYNSRGFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLF 105

Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
            L+ P  EI+++G G   E +  ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct: 106 WLLEPRIEIVVVGTGDRTERLQSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 165

Query: 163 ALLP 166
           AL+P
Sbjct: 166 ALIP 169

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Homo sapiens (taxid: 9606)

>sp|Q2HJI2|NDUF3_BOVIN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Bos taurus GN=NDUFAF3 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 65/124 (52%)

Query: 43  QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
           +I+L+       +    Y+  GF VNG +  G    +   ++ W    + +IT    S+F
Sbjct: 46  RISLLQRESPLAMYIDSYSSRGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLF 105

Query: 103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
            ++ P  EI+++G G   E + P + + +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct: 106 WMLEPRIEIVVVGTGDRTERLQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 165

Query: 163 ALLP 166
           AL+P
Sbjct: 166 ALIP 169

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Bos taurus (taxid: 9913)

>sp|A1L1F1|NDUF3_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3 OS=Danio rerio GN=ndufaf3 PE=2 SV=1

 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 33/102 (32%), Positives = 56/102 (54%)

Query: 60  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 119
           Y+  GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G  
Sbjct: 62  YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGAR 121

Query: 120 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVA 161
            E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R+ A
Sbjct: 122 TERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAA 163

Essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I).

Danio rerio (taxid: 7955)

>sp|P29962|Y1784_RHOCB Uncharacterized protein RCAP_rcc01784 OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=RCAP_rcc01784 PE=4 SV=1

 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 33/112 (29%), Positives = 52/112 (46%), Gaps = 7/112 (6%)

Query: 55  LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILIL 114
           L   GY    F + G  + G LL      + WT   F +     L+  + +    ++L+ 
Sbjct: 12  LPIDGYGPGFFRIAGAVHRGGLLIHAEAAMPWT--GFDD-----LAALRALAGQVDLLLC 64

Query: 115 GCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
           G G  I  +   L+  + + G+  E + + +AA  YN+L  EGR V AALLP
Sbjct: 65  GMGADIAHLPKGLQVELEALGVMAEPMSTASAARHYNVLLSEGRRVGAALLP 116

Not required for the biogenesis of c-type cytochromes.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:3436179	170	AT2G44525 "AT2G44525" [Arabido	0.994	1.0	0.748	9.4e-66
TAIR|locus:2101437	170	AT3G60150 "AT3G60150" [Arabido	0.994	1.0	0.736	1.1e-64
RGD|708545	185	Ndufaf3 "NADH dehydrogenase (u	0.725	0.670	0.314	6.9e-15
MGI|MGI:1913956	185	Ndufaf3 "NADH dehydrogenase (u	0.725	0.670	0.298	1.8e-14
UNIPROTKB|F1SKI6	185	NDUFAF3 "Uncharacterized prote	0.725	0.670	0.298	2.3e-14
UNIPROTKB|Q2HJI2	184	NDUFAF3 "NADH dehydrogenase [u	0.894	0.831	0.286	3.8e-14
UNIPROTKB|Q9BU61	184	NDUFAF3 "NADH dehydrogenase [u	0.888	0.826	0.294	4.9e-14
ZFIN|ZDB-GENE-070112-282	174	zgc:153176 "zgc:153176" [Danio	0.625	0.614	0.345	6.2e-14
UNIPROTKB|G4N5R1	250	MGG_05297 "Uncharacterized pro	0.409	0.28	0.458	2.4e-13
FB|FBgn0034919	196	CG5569 [Drosophila melanogaste	0.842	0.734	0.274	2.4e-12

TAIR|locus:3436179 AT2G44525 "AT2G44525" [Arabidopsis thaliana (taxid:3702)]

 Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
 Identities = 128/171 (74%), Positives = 151/171 (88%)

Query:     1 MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60
             MA+R +++ TLP L++S+RK  PK + N  LPSLRRAFSLYDQINLIDNVPEDQLRFQ +
Sbjct:     1 MAMRLKSMATLPKLIQSMRKEVPKHS-NPVLPSLRRAFSLYDQINLIDNVPEDQLRFQEF 59

Query:    61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYI 120
              DT FTVNGV+YEGSLLC+GNLL+SW+P+KFSEIT + LSIFQ VRPIPE+LI+GCGR I
Sbjct:    60 NDTSFTVNGVKYEGSLLCVGNLLMSWSPRKFSEITTDSLSIFQTVRPIPELLIVGCGRDI 119

Query:   121 EPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS 171
              PV PE+RQF++S GMKLE +DSRNAASTYNILNEEGR+VAAALLPYGV+S
Sbjct:   120 HPVTPEVRQFVKSLGMKLETVDSRNAASTYNILNEEGRVVAAALLPYGVTS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2101437 AT3G60150 "AT3G60150" [Arabidopsis thaliana (taxid:3702)]

 Score = 659 (237.0 bits), Expect = 1.1e-64, P = 1.1e-64
 Identities = 126/171 (73%), Positives = 150/171 (87%)

Query:     1 MAVRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGY 60
             MAVRQ+A+ TLP L++S+R    K  P+  LPSLRRAFSLYDQINLIDNVPEDQLRFQ +
Sbjct:     1 MAVRQKAMATLPKLIQSMRNEVTKQ-PSLVLPSLRRAFSLYDQINLIDNVPEDQLRFQEF 59

Query:    61 TDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYI 120
              +T FTVNGV+YEGSLLC+GNLL+SW+P+ FS+IT + LSIFQ VRPIPE+LI+GCGRY 
Sbjct:    60 DETSFTVNGVKYEGSLLCVGNLLMSWSPRYFSDITTDSLSIFQTVRPIPELLIVGCGRYN 119

Query:   121 EPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGVSS 171
              P+NP++RQF++S GMKLE +DSRNAASTYNILNEEGRIVAAALLPYGV+S
Sbjct:   120 HPLNPQVRQFVKSIGMKLETVDSRNAASTYNILNEEGRIVAAALLPYGVTS 170

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

RGD|708545 Ndufaf3 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 3" [Rattus norvegicus (taxid:10116)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 39/124 (31%), Positives = 66/124 (53%)

Query:    43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
             +I+L+ N     +    Y   GFT+NG +  G    +   ++ W      +IT    SIF
Sbjct:    47 RISLLQNEFPQAVYIDSYNSRGFTINGNRVFGPCALLPQTVVQWNVGSHQDITEESFSIF 106

Query:   103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
              ++ P  EI+++G G   E ++ ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct:   107 WMLEPRIEIVVVGTGNKTERLHSQVLQAMRQRGIAVEIQDTPNACATFNFLCHEGRVTGA 166

Query:   163 ALLP 166
             AL+P
Sbjct:   167 ALIP 170

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA;ISO

MGI|MGI:1913956 Ndufaf3 "NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, assembly factor 3" [Mus musculus (taxid:10090)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 37/124 (29%), Positives = 68/124 (54%)

Query:    43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
             +I+L+ +     +    Y+  GFT+ G +  G  + +   ++ W      +IT    S+F
Sbjct:    47 RISLLQSEFPQAVYIDSYSSRGFTICGNRVFGPCVLLPQTVVQWNVGSHQDITEESFSLF 106

Query:   103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
              ++ P  EI+++G G   E ++P++ Q +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct:   107 WMLEPRIEIVVVGTGNKTERLHPQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 166

Query:   163 ALLP 166
             AL+P
Sbjct:   167 ALIP 170

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005743 "mitochondrial inner membrane" evidence=ISO

GO:0016020 "membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISO

UNIPROTKB|F1SKI6 NDUFAF3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 37/124 (29%), Positives = 66/124 (53%)

Query:    43 QINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIF 102
             +I+L+       +    Y+  GF VNG +  G    + + ++ W      +IT    S+F
Sbjct:    46 RISLLQRESPQAMYIDSYSSRGFVVNGNRVLGPCALLPHSVVQWNVGSHQDITEGSFSLF 105

Query:   103 QLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
              ++ P  EI+++G G   E + P++ + +R  G+ +E  D+ NA +T+N L  EGR+  A
Sbjct:   106 WMLEPRIEIVVVGTGDRTERLQPQVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGA 165

Query:   163 ALLP 166
             AL+P
Sbjct:   166 ALIP 169

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q2HJI2 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Bos taurus (taxid:9913)]

 Score = 182 (69.1 bits), Expect = 3.8e-14, P = 3.8e-14
 Identities = 47/164 (28%), Positives = 81/164 (49%)

Query:    14 LMRSLRKGSPKA-APNQPLP-SLRRAF-------SLYDQ--INLIDNVPEDQLRFQGYTD 62
             ++R+L +  P   +P   LP + RR          LY +  I+L+       +    Y+ 
Sbjct:     6 VLRNLYRARPALRSPPSELPWAPRRGHRLTPADDELYQRTRISLLQRESPLAMYIDSYSS 65

Query:    63 TGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP 122
              GF VNG +  G    +   ++ W    + +IT    S+F ++ P  EI+++G G   E 
Sbjct:    66 RGFVVNGNRVFGPCALLPQSVVQWNVGSYQDITEESFSLFWMLEPRIEIVVVGTGDRTER 125

Query:   123 VNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
             + P + + +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   126 LQPHVLRAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

UNIPROTKB|Q9BU61 NDUFAF3 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 3" [Homo sapiens (taxid:9606)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 48/163 (29%), Positives = 79/163 (48%)

Query:    15 MRSLRKGSPKA-APNQPLP-SLRRAF-------SLYDQ--INLIDNVPEDQLRFQGYTDT 63
             +RSL +  P    P   LP + RR          LY +  I+L+       +    Y   
Sbjct:     7 LRSLYRARPSLRCPPVELPWAPRRGHRLSPADDELYQRTRISLLQREAAQAMYIDSYNSR 66

Query:    64 GFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPV 123
             GF +NG +  G    + + ++ W      +IT +  S+F L+ P  EI+++G G   E +
Sbjct:    67 GFMINGNRVLGPCALLPHSVVQWNVGSHQDITEDSFSLFWLLEPRIEIVVVGTGDRTERL 126

Query:   124 NPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
               ++ Q +R  G+ +E  D+ NA +T+N L  EGR+  AAL+P
Sbjct:   127 QSQVLQAMRQRGIAVEVQDTPNACATFNFLCHEGRVTGAALIP 169

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

ZFIN|ZDB-GENE-070112-282 zgc:153176 "zgc:153176" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 37/107 (34%), Positives = 61/107 (57%)

Query:    60 YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRY 119
             Y+  GF +NG    G    +   +L W     S+I+   LS+F L+ P  E+L+LG G  
Sbjct:    62 YSPRGFNINGNTVFGPCAVLPPAILQWNVGSHSDISVESLSLFYLLEPQIEVLVLGTGAR 121

Query:   120 IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
              E ++ E+ + ++  G+ +E  D+ NA +T+N L+ E R+ AAAL+P
Sbjct:   122 TERLHAEVLEELKKRGIAVEVQDTPNACATFNFLSSEKRLAAAALIP 168

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

UNIPROTKB|G4N5R1 MGG_05297 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 154 (59.3 bits), Expect = 2.4e-13, Sum P(2) = 2.4e-13
 Identities = 33/72 (45%), Positives = 50/72 (69%)

Query:    99 LSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNIL-NEEG 157
             L++  LV P P++L+LG G  + P+ P  R+FI   G+++E +D+RNAA+ +N+L  E G
Sbjct:   174 LALLGLVWPRPDLLLLGLGAEMRPLCPATRKFITGLGIRVEVLDTRNAAAQFNLLATERG 233

Query:   158 -RIVAAALLPYG 168
              R VAAAL+P G
Sbjct:   234 TRDVAAALIPAG 245

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0034919 CG5569 [Drosophila melanogaster (taxid:7227)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 42/153 (27%), Positives = 77/153 (50%)

Query:    23 PKAAPNQPLPSLRRAFS-LYD-----QINLIDNVPEDQLRFQGYTDTGFTVNG-VQYEGS 75
             P+    +PL ++   FS  YD     ++ + +   +  L   GY+  GF +N  +   G 
Sbjct:    19 PRITACRPLHAIPANFSKAYDHDGKTKVTIFNTETDLGLMVTGYSQYGFRLNNDMVLIGP 78

Query:    76 LLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP--VNPELRQFIRS 133
             +      +LSW    F +I  + LS+F  + P  ++LI+G G    P  ++  + +F++ 
Sbjct:    79 ISVFPRSVLSWNVNSFEDINEDSLSLFPTLEPKIDVLIIGIGDQAPPPALSKRIIEFMKK 138

Query:   134 TGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
               + +E + +  A +T+N LN E R+VA AL+P
Sbjct:   139 YKINVEILRTEQACATFNFLNAENRMVACALIP 171

GO:0022008 "neurogenesis" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
cd05125	114	cd05125, Mth938_2P1-like, Mth938_2P1-like domain	2e-42
pfam04430	109	pfam04430, DUF498, Protein of unknown function (DU	1e-34
cd00248	109	cd00248, Mth938-like, Mth938-like domain	1e-23
COG3737	127	COG3737, COG3737, Uncharacterized conserved protei	1e-20
cd05560	109	cd05560, Xcc1710_like, Xcc1710_like family, specif	1e-19

>gnl|CDD|240161 cd05125, Mth938_2P1-like, Mth938_2P1-like domain

 Score =  137 bits (347), Expect = 2e-42
 Identities = 48/114 (42%), Positives = 72/114 (63%)

Query: 55  LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILIL 114
                Y++ GF +N  +  GS   +   + SW    F +IT   LS+F+L+ P PEIL++
Sbjct: 1   NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVI 60

Query: 115 GCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 168
           G GR   P++PELR++ +  G+ +E +D+RNA +T+N L EEGR VAAAL+P G
Sbjct: 61  GTGRKSRPLSPELRKYFKKLGIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG 114

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available. Length = 114

>gnl|CDD|218085 pfam04430, DUF498, Protein of unknown function (DUF498/DUF598)

 Score =  117 bits (295), Expect = 1e-34
 Identities = 45/109 (41%), Positives = 68/109 (62%), Gaps = 1/109 (0%)

Query: 57  FQGYTDTGFTVNGVQYEGSLLCIGN-LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILG 115
             GY   GF +NGV+YEGSLL + + ++  W    F +++P  L++   + P PE+LI+G
Sbjct: 1   IDGYGPGGFRINGVRYEGSLLVLPDGIVWDWDVGSFEDLSPEDLALLLALAPDPEVLIIG 60

Query: 116 CGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 164
            G  +  + PELR+ +R  G+ +E +D+  A  TYN+L  EGR VAAAL
Sbjct: 61  TGARLRFLPPELREALRKLGIGVEVMDTGAACRTYNVLASEGRRVAAAL 109

This is a large family of uncharacterized proteins found in all domains of life. The structure shows a novel fold with three beta sheets. A dimeric form is found in the crystal structure. It was suggested that the cleft in between the two monomers might bing nucleic acid. Length = 109

>gnl|CDD|238152 cd00248, Mth938-like, Mth938-like domain

 Score = 89.2 bits (222), Expect = 1e-23
 Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 3/110 (2%)

Query: 57  FQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITP-NCLSIFQLVRPIPEILILG 115
             GY   GF + G  Y G LL + + ++ W     S++ P   L +    RP  +IL++G
Sbjct: 2   IDGYGPGGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAEDRP--DILLIG 59

Query: 116 CGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 165
            G  I  +   LR  +R+ G+ +E + +  A  TYN+L  EGR VAAAL+
Sbjct: 60  TGAEIAFLPRALRAALRAAGIGVEVMSTGAACRTYNVLLSEGRRVAAALI 109

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined. Length = 109

>gnl|CDD|226260 COG3737, COG3737, Uncharacterized conserved protein [Function unknown]

 Score = 82.1 bits (203), Expect = 1e-20
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 2/115 (1%)

Query: 53  DQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITP-NCLSIFQLVRPIPEI 111
            +     Y   GF    + + GSLL + + +  W     S++TP +   +     P  EI
Sbjct: 14  GRAPIDAYGAGGFRFADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEA-PDVEI 72

Query: 112 LILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
           L++G G  +    P+LR  +++ G+ +E + +  A  TYN+L  EGR VAAAL+ 
Sbjct: 73  LLIGTGARLRFPPPKLRAALKAAGISVEPMSTGAAVRTYNVLLSEGRRVAAALIA 127

Length = 127

>gnl|CDD|240187 cd05560, Xcc1710_like, Xcc1710_like family, specific to proteobacteria

 Score = 79.2 bits (196), Expect = 1e-19
 Identities = 36/111 (32%), Positives = 54/111 (48%), Gaps = 3/111 (2%)

Query: 56  RFQGYTDTGFTVNGVQYEGSLLCI-GNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILIL 114
               Y D    +N  +YE SL+     L+  W   +F ++T        L+   PE+++L
Sbjct: 1   TITAYGDGYVEINDQRYEHSLIVTPDELITDWPVARFEDLTAAHFE--ALLALQPEVILL 58

Query: 115 GCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 165
           G G       P L   + + G+ +E +D++ A  TYNIL  EGR V AALL
Sbjct: 59  GTGERQRFPPPALLAPLLARGIGVEVMDTQAACRTYNILMGEGRRVVAALL 109

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG3363	196	consensus Uncharacterized conserved nuclear protei	100.0
cd05125	114	Mth938_2P1-like Mth938_2P1-like domain. This model	100.0
cd00248	109	Mth938-like Mth938-like domain. The members of thi	100.0
PF04430	110	DUF498: Protein of unknown function (DUF498/DUF598	100.0
cd05560	109	Xcc1710_like Xcc1710_like family, specific to prot	100.0
cd05126	117	Mth938 Mth938 domain. Mth938 is a hypothetical pro	100.0
COG3737	127	Uncharacterized conserved protein [Function unknow	100.0
COG1504	121	Uncharacterized conserved protein [Function unknow	99.73
PF05499	176	DMAP1: DNA methyltransferase 1-associated protein	81.43

>KOG3363 consensus Uncharacterized conserved nuclear protein [Function unknown]

Probab=100.00  E-value=3.9e-48  Score=307.74  Aligned_cols=168  Identities=55%  Similarity=0.916  Sum_probs=157.7

Q ss_pred             chhhhhhhhHHHHHHHhcCCCCCCCCCCCCccccccccccccccccCCCCCcceEEEEcCCeE-EECCEEEeecEEEeCC
Q 030786            3 VRQRAVTTLPNLMRSLRKGSPKAAPNQPLPSLRRAFSLYDQINLIDNVPEDQLRFQGYTDTGF-TVNGVQYEGSLLCIGN   81 (171)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~I~~y~~g~f-~Ing~~y~gsvii~p~   81 (171)
                      .|-...+++|+|+|++|++.+++ ...-+||++|+|++|++||++++.+++++.++||+..+| .+||+.|.|++.|+|+
T Consensus         6 lr~~g~qt~~~ll~s~~a~r~lh-~~~vnps~~~d~s~~~qI~l~~te~~~ql~v~gys~ygfrl~ng~~l~Gpi~~fp~   84 (196)
T KOG3363|consen    6 LRALGMQTLPKLLQSMRAERPLH-GYPVNPSLRRDFSLYDQINLIDTEPEDQLRVQGYSCYGFRLVNGVKLEGPILCFPN   84 (196)
T ss_pred             HHHHhHhhHHHHHHHHhhccccc-cccCChhhhhcccccceeeeecCCchhhheeeeecccceEeecCeEEEecceeccc
Confidence            44555689999999999998874 888999999999999999999999999999999995555 5689999999999999


Q ss_pred             ceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCC--CCHHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccce
Q 030786           82 LLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP--VNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRI  159 (171)
Q Consensus        82 ~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~--l~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~  159 (171)
                      .+++|.+.+++||+.++|++|..++|+||+||+|+|.+...  +.++++++++++||++|+|||++||.|||+|++|||.
T Consensus        85 ~~lSW~v~~fedIt~dSLslF~tlePkidlLIvG~Gd~~~p~~v~~~V~~F~k~~ki~lEi~dte~A~aTfNfLNaEgR~  164 (196)
T KOG3363|consen   85 LLLSWSVRTFEDITTDSLSLFQTLEPKIDLLIVGCGDKKHPDKVRPSVRQFVKSHKIKLEIVDTENAAATFNFLNAEGRY  164 (196)
T ss_pred             ceeeccCCChhhcCcchHhHhhhcCCCccEEEEecCCcCCchhcCHHHHHHHHHhCcceEEecchhhhhHhhhccccccE
Confidence            99999999999999999999999999999999999999776  9999999999999999999999999999999999999


Q ss_pred             eEEEeccCccCC
Q 030786          160 VAAALLPYGVSS  171 (171)
Q Consensus       160 VaAALip~~~~~  171 (171)
                      |||||+|++|.|
T Consensus       165 VaaAL~Pp~v~s  176 (196)
T KOG3363|consen  165 VAAALLPPGVTS  176 (196)
T ss_pred             EEEEecCCcccc
Confidence            999999999875

>cd05125 Mth938_2P1-like Mth938_2P1-like domain

Probab=100.00  E-value=1.2e-41  Score=257.50  Aligned_cols=114  Identities=42%  Similarity=0.779  Sum_probs=111.1

Q ss_pred             ceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHc
Q 030786           55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRST  134 (171)
Q Consensus        55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~  134 (171)
                      +.|++|++++|+|||+.|.||++++|+.+++|+++++++++.+||+.|..++|+||+||||||+++++++|+++++|+++
T Consensus         1 ~~I~~y~~~~f~in~~~~~gs~iv~p~~~~~W~~~~~~~l~~~~l~~l~~~~~~peiliiGtG~~~~~~~~~~~~~l~~~   80 (114)
T cd05125           1 NYIDAYSENGFRLNNNKVIGSGAILPKEVFSWNVSSFEDITEESLSLFELLEPRPEILVIGTGRKSRPLSPELRKYFKKL   80 (114)
T ss_pred             CeEEeECCCeEEECCEEEEEeEEEccCceeccCCCChhhCCHHHHHHHHhccCCCCEEEEccCCCCCcCCHHHHHHHHHc
Confidence            46999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCeEEEeChHHHHHHHHHhhhccceeEEEeccCc
Q 030786          135 GMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  168 (171)
Q Consensus       135 GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~  168 (171)
                      ||++|+|+|++||||||+|++|||+|+|||||++
T Consensus        81 gi~vevm~T~~AcrtyN~L~~EgR~VaaaLip~~  114 (114)
T cd05125          81 GIAVEVVDTRNACATFNFLAEEGRRVAAALIPPG  114 (114)
T ss_pred             CCEEEEECHHHHHHHHHHHHhCCCeEEEEEecCC
Confidence            9999999999999999999999999999999985

This model contains sequences that are similar to 2P1, a partially characterized nuclear protein, which is homologous to E3-3 from rat and known to be alternatively spliced. Its function is unknown. This family is part of the Mth938 family, for which structures, but no functional data are available.

>cd00248 Mth938-like Mth938-like domain

Probab=100.00  E-value=9.8e-41  Score=250.14  Aligned_cols=109  Identities=34%  Similarity=0.614  Sum_probs=104.0

Q ss_pred             eEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 030786           56 RFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG  135 (171)
Q Consensus        56 ~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~G  135 (171)
                      .|++|++|+|+|||++|.||++++|+.+++|+++++++++.+||+.+...+ +||+||||||+++++++|+++++|+++|
T Consensus         1 ~i~~y~~g~~~i~g~~y~~~viv~p~~~~~w~~~~~~~l~~~~l~~~~~~~-~peiliiGTG~~~~~~~~~~~~~l~~~g   79 (109)
T cd00248           1 PIDGYGPGGFRIAGQVYRGPLLVLPDGVVPWDGTSLSDLDPEALLPLLAED-RPDILLIGTGAEIAFLPRALRAALRAAG   79 (109)
T ss_pred             CeeeecCCEEEECCEEEeeCEEEeCCceeecCCcCcccCCHHHHHHHHhhC-CCCEEEEcCCCCCCcCCHHHHHHHHHcC
Confidence            489999999999999999999999999999999999999999999655544 5999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          136 MKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       136 I~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      |++|+|||++||||||+|++|||+|+||||
T Consensus        80 I~vE~m~T~aAcrTyNiL~~EgR~Vaaali  109 (109)
T cd00248          80 IGVEVMSTGAACRTYNVLLSEGRRVAAALI  109 (109)
T ss_pred             CeEEEeCcHHHHHHHHHHHhCCcceEEEeC
Confidence            999999999999999999999999999996

The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.

>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1

Probab=100.00  E-value=1.8e-40  Score=248.31  Aligned_cols=109  Identities=40%  Similarity=0.706  Sum_probs=101.0

Q ss_pred             EEEEcCCeEEECCEEEeecEEEeCCce-eecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHcC
Q 030786           57 FQGYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRSTG  135 (171)
Q Consensus        57 I~~y~~g~f~Ing~~y~gsvii~p~~v-~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~G  135 (171)
                      |++|++|+|+|||++|.||++++|+.+ ++|+.+++++++.++|+.+..+.|+||+||||||+++++++|+++++|+++|
T Consensus         1 I~~y~~g~~~i~g~~~~~~iii~p~~~~~~w~~~~~~~l~~~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~G   80 (110)
T PF04430_consen    1 ITGYGFGGFVINGKEYEGSIIIFPDGVIRDWKVKSPHDLTPEDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKG   80 (110)
T ss_dssp             EEEEETTEEEETTEEESSEEEEETTSEEEEEHHSSTTCEETHHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT
T ss_pred             CceEeCCEEEECCEEEccCEEEECCCcccCcCCCCcccCCHHHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcC
Confidence            799999999999999999999999998 8998899999999999988888899999999999999999999999999999


Q ss_pred             CeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          136 MKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       136 I~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      |++|+|+|++||||||+|++|||+|+|||+
T Consensus        81 I~ve~m~T~~Ac~tyN~L~~EgR~V~aal~  110 (110)
T PF04430_consen   81 IGVEVMDTPAACRTYNILASEGRRVAAALI  110 (110)
T ss_dssp             -EEEEE-HHHHHHHHHHHHHTTC-EEEEEE
T ss_pred             CeEEEECHHHHHHHHHHHHhCCccEEEEeC
Confidence            999999999999999999999999999996

6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.

>cd05560 Xcc1710_like Xcc1710_like family, specific to proteobacteria

Probab=100.00  E-value=5.8e-40  Score=246.19  Aligned_cols=108  Identities=32%  Similarity=0.534  Sum_probs=102.0

Q ss_pred             eEEEEcCCeEEECCEEEeecEEEeCCceee-cCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHHHHc
Q 030786           56 RFQGYTDTGFTVNGVQYEGSLLCIGNLLLS-WTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFIRST  134 (171)
Q Consensus        56 ~I~~y~~g~f~Ing~~y~gsvii~p~~v~~-W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l~~~  134 (171)
                      .|++|++|+|+|||++|.||++++|+.+.. |.++++++++.+||+.+.  ..+||+||||||+++.+++|+++++|+++
T Consensus         1 ~I~~y~~g~~~i~g~~y~~sviv~p~~~~~~w~~~~~~~l~~e~l~~l~--~~~peiliiGTG~~~~~~~~~~~~~l~~~   78 (109)
T cd05560           1 TITAYGDGYVEINDQRYEHSLIVTPDELITDWPVARFEDLTAAHFEALL--ALQPEVILLGTGERQRFPPPALLAPLLAR   78 (109)
T ss_pred             CeEeecCCEEEECCEEEecCEEEECCceeeccccCCcccCCHHHHHHHH--hcCCCEEEEecCCCCCcCCHHHHHHHHHc
Confidence            489999999999999999999999998766 999999999999999544  45699999999999999999999999999


Q ss_pred             CCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          135 GMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       135 GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      ||++|+|+|++||||||+|++|||+|+||||
T Consensus        79 gi~vE~m~T~~AcrTyN~L~~EgR~V~Aali  109 (109)
T cd05560          79 GIGVEVMDTQAACRTYNILMGEGRRVVAALL  109 (109)
T ss_pred             CCeEEEECHHHHHHHHHHHHhCCCcEEEEeC
Confidence            9999999999999999999999999999996

Xcc1710 is a hypothetical protein from Xanthomonas campestris pv. campestris str. ATCC 33913, similar to Mth938, a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. Their three-dimensional structures have been determined, but their functions are unknown.

>cd05126 Mth938 Mth938 domain

Probab=100.00  E-value=5e-37  Score=233.18  Aligned_cols=108  Identities=22%  Similarity=0.314  Sum_probs=100.6

Q ss_pred             eEEEEcCCeEEECCEEEeecEEEeCCceeecCCC-------CCCCCChhhhhhhhhhCCCCcEEEEeecCCCC-CCCHHH
Q 030786           56 RFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPK-------KFSEITPNCLSIFQLVRPIPEILILGCGRYIE-PVNPEL  127 (171)
Q Consensus        56 ~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~-------~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~-~l~p~l  127 (171)
                      .|++|++|+|+|||++|++|++|.|+++..|+++       ++++++.+||+  ++++.+||+||||||.+++ +++|++
T Consensus         1 ~i~~y~~G~i~i~g~~y~~~viv~p~~~~~w~~~~~s~~~~~~~~l~~~~l~--~ll~~~peivliGTG~~~~~~~~~~~   78 (117)
T cd05126           1 EIESTSFGSITVGGETYEHDIVVYPDGSRARRWKELSKKTGTSHGLQPEELE--ELLEEGVEVIVIGTGQSGALKVPPET   78 (117)
T ss_pred             CcceecCCEEEECCEEEcCCEEEeCCccccccccccccccCCcccCCHHHHH--HHHhcCCCEEEEcCCCCccccCCHHH
Confidence            4899999999999999999999999998888876       88899999998  4566789999999999976 789999


Q ss_pred             HHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          128 RQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       128 ~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      +++|+++||++|+|+|++||||||+|++|||+|+|||-
T Consensus        79 ~~~l~~~Gi~ve~m~T~aAcrTYN~L~~EgRrV~Aa~H  116 (117)
T cd05126          79 VEKLEKRGVEVLVLPTEEAVKRYNELAGKGRRVLAVIH  116 (117)
T ss_pred             HHHHHhcCCEEEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence            99999999999999999999999999999999999983

Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.

>COG3737 Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=5.4e-38  Score=237.83  Aligned_cols=121  Identities=29%  Similarity=0.481  Sum_probs=112.4

Q ss_pred             cccCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCH
Q 030786           46 LIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNP  125 (171)
Q Consensus        46 ~~~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p  125 (171)
                      +-++..+++..|++|+.|||++||+.++||++|.|+++..|.+.+.+++++++|+.+....+++|+||||||..++|+|+
T Consensus         7 ~~e~~~Pg~~~~~ayG~Gg~R~a~~sh~~SlL~lpdgv~~W~v~~~~~Lt~e~f~~vl~~a~~~EilliGTG~~~rf~p~   86 (127)
T COG3737           7 FREAHFPGRAPIDAYGAGGFRFADMSHRGSLLVLPDGVCDWEVATLSDLTPEDFERVLAEAPDVEILLIGTGARLRFPPP   86 (127)
T ss_pred             eecCCCCCcchhhhhcCCceEeccccccccEEEecCccccccccChhhCCHHHHHHHHhcCCCceEEEEecCccccCCCH
Confidence            33555577777999999999999999999999999999999999999999999985555567789999999999999999


Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEecc
Q 030786          126 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  166 (171)
Q Consensus       126 ~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip  166 (171)
                      ++++.|+..||++|+|+|++||||||+|++|||+||||||+
T Consensus        87 ~l~aal~~~gIsve~Mst~AA~RTYNvL~sEgRrvAAALi~  127 (127)
T COG3737          87 KLRAALKAAGISVEPMSTGAAVRTYNVLLSEGRRVAAALIA  127 (127)
T ss_pred             HHHHHHHHcCCccccccchhhHHHHHHHHhccHHHHHHhcC
Confidence            99999999999999999999999999999999999999986

>COG1504 Uncharacterized conserved protein [Function unknown]

Probab=99.73  E-value=2.3e-17  Score=124.16  Aligned_cols=107  Identities=21%  Similarity=0.320  Sum_probs=95.0

Q ss_pred             eEEEEcCCeEEECCEEEeecEEEeCCce------eecCCC--CCCCCChhhhhhhhhhCCCCcEEEEeecCC-CCCCCHH
Q 030786           56 RFQGYTDTGFTVNGVQYEGSLLCIGNLL------LSWTPK--KFSEITPNCLSIFQLVRPIPEILILGCGRY-IEPVNPE  126 (171)
Q Consensus        56 ~I~~y~~g~f~Ing~~y~gsvii~p~~v------~~W~~~--~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~-~~~l~p~  126 (171)
                      .|++|++|+++|.|+.|+.+|+|.|++-      ..|+.+  +++.+.+|+++  ++++.+||+||+|||.. ...++++
T Consensus         3 ~ie~~~FG~v~i~Gk~f~~DIvi~~dG~v~rr~K~lskrK~GTSHkl~~eEle--~~lee~~E~ivvGTG~~G~l~l~~e   80 (121)
T COG1504           3 EIESTSFGSVTIGGKDFEHDIVIRPDGKVERREKELSKRKYGTSHKLALEELE--ELLEEGPEVIVVGTGQSGMLELSEE   80 (121)
T ss_pred             cccccceeeEEECCEeccccEEEecCCceehhhhhhhhhhcCcccccCHHHHH--HHHhcCCcEEEEecCceeEEEeCHH
Confidence            4889999999999999999999998763      225554  46999999998  46667899999999999 6799999


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      .+++|+++|++|...+|+.|...||.|.+. |+|+|++-
T Consensus        81 a~e~~r~k~~~vi~~pT~EAikr~nel~~~-krV~aiiH  118 (121)
T COG1504          81 AREFFRKKGCEVIELPTPEAIKRYNELRGK-KRVAAIIH  118 (121)
T ss_pred             HHHHHHhcCCeEEEeCCHHHHHHHHHHhcc-ceEEEEEE
Confidence            999999999999999999999999999999 89988763

>PF05499 DMAP1: DNA methyltransferase 1-associated protein 1 (DMAP1); InterPro: IPR008468 DNA methylation can contribute to transcriptional silencing through several transcriptionally repressive complexes, which include methyl-CpG binding domain proteins (MBDs) and histone deacetylases (HDACs)

Probab=81.43  E-value=1.2  Score=36.44  Aligned_cols=31  Identities=19%  Similarity=0.515  Sum_probs=27.4

Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHHhhhc
Q 030786          126 ELRQFIRSTGMKLEAIDSRNAASTYNILNEE  156 (171)
Q Consensus       126 ~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sE  156 (171)
                      .+-..|.+.||.+..|+|..=|..||-|.++
T Consensus       109 ~iEq~L~elgv~~~PmPTe~Ic~~fneLRsd  139 (176)
T PF05499_consen  109 AIEQFLQELGVDLNPMPTEEICQEFNELRSD  139 (176)
T ss_pred             HHHHHHHHcCCCCCCCChHHHHHHHHHHHHH
Confidence            3455789999999999999999999999875

The chief enzyme that maintains mammalian DNA methylation, DNMT1, can also establish a repressive transcription complex. The non-catalytic N terminus of DNMT1 binds to HDAC2 and DMAP1 (for DNMT1 associated protein), and can mediate transcriptional repression. DMAP1 has intrinsic transcription repressive activity, and binds to the transcriptional co-repressor TSG101. DMAP1 is targeted to replication foci through interaction with the far N terminus of DNMT1 throughout S phase, whereas HDAC2 joins DNMT1 and DMAP1 only during late S phase, providing a platform for how histones may become deacetylated in heterochromatin following replication [].; GO: 0045892 negative regulation of transcription, DNA-dependent, 0005634 nucleus

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
2k2e_A	158	Solution Nmr Structure Of Bordetella Pertussis Prot		2e-08
3cpk_A	150	Crystal Structure Of The Q7w7n7_borpa Protein From		3e-08
2fvt_A	135	Nmr Structure Of The Rpa2829 Protein From Rhodopseu		1e-06

>pdb|2K2E|A Chain A, Solution Nmr Structure Of Bordetella Pertussis Protein Bp2786, A Mth938-Like Domain. Northeast Structural Genomics Consortium Target Ber31 Length = 158

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 168
           PE+L++G GR    + PE  + + + G+ +EA+D++ AA TYNIL  EGR V  ALLP G
Sbjct: 89  PEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDG 148
Query: 169 VS 170
            S
Sbjct: 149 DS 150

>pdb|3CPK|A Chain A, Crystal Structure Of The Q7w7n7_borpa Protein From Bordetella Parapertussis. Northeast Structural Genomics Consortium Target Ber31 Length = 150

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/62 (46%), Positives = 40/62 (64%)
Query: 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG 168
           PE+L++G GR    + PE  + + + G+ +EA D++ AA TYNIL  EGR V  ALLP G
Sbjct: 89  PEVLLVGTGRRQHLLGPEQVRPLLAXGVGVEAXDTQAAARTYNILXAEGRRVVVALLPDG 148
Query: 169 VS 170
            S
Sbjct: 149 DS 150

>pdb|2FVT|A Chain A, Nmr Structure Of The Rpa2829 Protein From Rhodopseudomonas Palustris: Northeast Structural Genomics Target Rpr43 Length = 135

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/107 (31%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 60  YTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLS-IFQLVRPIPEILILGCGR 118
           Y   GF   G+ ++GSLL + + +  W   K  +I    L  +F     I + LI+G G 
Sbjct: 19  YGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAI-DTLIVGTGA 77
Query: 119 YIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL 165
            +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+
Sbjct: 78  DVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALI 124

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	2e-37
2fi9_A	128	Outer membrane protein; bartonella hense protein s	2e-36
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	1e-35
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	1e-31
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	2e-24
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	1e-09

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV} Length = 132

 Score =  124 bits (313), Expect = 2e-37
 Identities = 28/124 (22%), Positives = 55/124 (44%), Gaps = 3/124 (2%)

Query: 49  NVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGN-LLLSWTPKKFSEITPNCLSIFQLVRP 107
             P+     +        VN    + S + + + L+  W      ++ P    +  ++  
Sbjct: 6   EHPDYTYALRAADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPA--HMDAVLAL 63

Query: 108 IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY 167
            P +++LG G   +  + ++     + G+ LEA+ +  AA TYN+L  EGR VA A++  
Sbjct: 64  NPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVG 123

Query: 168 GVSS 171
           G+  
Sbjct: 124 GLEH 127

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1 Length = 128

 Score =  121 bits (306), Expect = 2e-36
 Identities = 27/125 (21%), Positives = 50/125 (40%), Gaps = 1/125 (0%)

Query: 42  DQINLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSI 101
             I + +     +     Y + GF    + + GS++CI + +           T   +S 
Sbjct: 3   HAIQIREAHFPGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISR 61

Query: 102 FQLVRPIPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVA 161
                   E+L++G G  +  +  ELR  +    +  + + +  A  T+N+L  E R VA
Sbjct: 62  VLEESDQIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVA 121

Query: 162 AALLP 166
           A L  
Sbjct: 122 ALLFA 126

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1 Length = 135

 Score =  120 bits (301), Expect = 1e-35
 Identities = 32/115 (27%), Positives = 51/115 (44%)

Query: 52  EDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEI 111
                   Y   GF   G+ ++GSLL + + +  W   K  +I    L          + 
Sbjct: 11  PRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDT 70

Query: 112 LILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
           LI+G G  +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+ 
Sbjct: 71  LIVGTGADVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIA 125

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A Length = 150

 Score =  110 bits (276), Expect = 1e-31
 Identities = 40/148 (27%), Positives = 65/148 (43%), Gaps = 23/148 (15%)

Query: 46  LIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCI-GNLLLSWTPKKFSEITPNCLSIFQL 104
           L  +          Y D    VN V++  ++       + SW  ++ ++IT + L     
Sbjct: 3   LHTDPATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAG 62

Query: 105 VRPI----------------------PEILILGCGRYIEPVNPELRQFIRSTGMKLEAID 142
           +  +                      PE+L++G GR    + PE  + + + G+ +EA+D
Sbjct: 63  LAEVVRDPLAFLDEPEAGAGARPANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMD 122

Query: 143 SRNAASTYNILNEEGRIVAAALLPYGVS 170
           ++ AA TYNIL  EGR V  ALLP G S
Sbjct: 123 TQAAARTYNILMAEGRRVVVALLPDGDS 150

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A Length = 122

 Score = 91.1 bits (226), Expect = 2e-24
 Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 9/116 (7%)

Query: 56  RFQGYTDTGFTVNGVQYEGS-LLCIGNLLLSWTPKK-----FSEITPNCLSIFQLVRPIP 109
                +     V G                +W  ++        + P    + ++V    
Sbjct: 5   EIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPA--DVKEVVEKGV 62

Query: 110 EILILGCGRY-IEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 164
           + L++G G      V     ++++  G+ +  + +  A   YN L  +G  V    
Sbjct: 63  QTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 118

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1 Length = 113

 Score = 52.7 bits (126), Expect = 1e-09
 Identities = 21/116 (18%), Positives = 37/116 (31%), Gaps = 18/116 (15%)

Query: 57  FQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSE--------ITPNCLSIFQLVRPI 108
           F        T  G +Y   ++   +  ++   K+ S         +    L   +L+   
Sbjct: 4   FSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELE--ELLEEK 61

Query: 109 PEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 164
           PE +I+G G +                     + +  A   YN     GR VAA +
Sbjct: 62  PESIIIGSGVH--------GALETGFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2fi9_A	128	Outer membrane protein; bartonella hense protein s	100.0
2fvt_A	135	Conserved hypothetical protein; MTH938-like fold,	100.0
2gm2_A	132	Conserved hypothetical protein; MTH938-like fold,	100.0
3cpk_A	150	Uncharacterized protein Q7W7N7_borpa; BPP2477, BER	100.0
2ab1_A	122	Hypothetical protein; HS.95870, DUF498, structural	100.0
2cyj_A	118	Hypothetical protein PH1505; conserved hypothetica	100.0
1ihn_A	113	Hypothetical protein MTH938; methanobacterium ther	99.97

>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1

Probab=100.00  E-value=1.6e-42  Score=265.37  Aligned_cols=123  Identities=22%  Similarity=0.315  Sum_probs=113.3

Q ss_pred             cccccCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCC
Q 030786           44 INLIDNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPV  123 (171)
Q Consensus        44 ~~~~~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l  123 (171)
                      +.+-++..++.+.|++|++|+|+|||++|.|||+|+|++++.|++++ ++|+++||+.+..+.|+||+||||||.+++++
T Consensus         5 M~l~~~~~~~~~~I~~y~~g~f~i~g~~~~g~i~v~p~~~~~W~~~~-~~l~~~~l~~l~~~~p~pevliiGtG~~~~~l   83 (128)
T 2fi9_A            5 IQIREAHFPGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRL   83 (128)
T ss_dssp             ------CBSSCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCC
T ss_pred             cccCCCCCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCeeccCCCc-CCCCHHHHHHHHhcCCCCCEEEECCCCCCCCC
Confidence            44556677888999999999999999999999999999999999999 99999999988788899999999999999999


Q ss_pred             CHHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccC
Q 030786          124 NPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY  167 (171)
Q Consensus       124 ~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~  167 (171)
                      +|+++++|+++||++|+|||++||||||+|++|||+|+|||||+
T Consensus        84 ~p~~~~~l~~~GI~vE~m~T~aAcrtyNiL~~EgR~VaaaLi~~  127 (128)
T 2fi9_A           84 PEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAV  127 (128)
T ss_dssp             CHHHHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred             CHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEEec
Confidence            99999999999999999999999999999999999999999995

>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1

Probab=100.00  E-value=1.6e-42  Score=267.95  Aligned_cols=117  Identities=27%  Similarity=0.376  Sum_probs=113.0

Q ss_pred             CCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHH
Q 030786           52 EDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFI  131 (171)
Q Consensus        52 ~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l  131 (171)
                      ++.+.|++|++|+|+|||++|.|||+|+|++++.|+++++++|++++|+.|..+.|+||+||||||.++.+++|+++++|
T Consensus        11 ~~~~~I~~y~~g~f~ing~~~~gsilv~p~~~~~W~~~~~~~l~~e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l   90 (135)
T 2fvt_A           11 PRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLREAL   90 (135)
T ss_dssp             CSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHH
T ss_pred             CCCceEEEEcCCEEEECCEEEEeCEEEeCCCccccCCCCcccCCHHHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHH
Confidence            56678999999999999999999999999999999999999999999998888899999999999999999999999999


Q ss_pred             HHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCc
Q 030786          132 RSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  168 (171)
Q Consensus       132 ~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~  168 (171)
                      +++||+||+|||++||||||+|++|||+|+|||||+.
T Consensus        91 ~~~GI~vE~M~T~aAcrTyNiL~~EgR~VaAaLi~~~  127 (135)
T 2fvt_A           91 RGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAVP  127 (135)
T ss_dssp             HTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECCC
T ss_pred             HHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEcCCC
Confidence            9999999999999999999999999999999999975

>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}

Probab=100.00  E-value=1.1e-41  Score=262.33  Aligned_cols=119  Identities=24%  Similarity=0.381  Sum_probs=111.5

Q ss_pred             cCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCce-eecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHH
Q 030786           48 DNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPE  126 (171)
Q Consensus        48 ~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v-~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~  126 (171)
                      ++..++.+.|++|++|+|+|||++|.|||+|+|+++ +.|+++++++|++++|+.+  ++++||+||||||.++.+++|+
T Consensus         5 ~~~~~~~~~I~~y~~g~f~i~g~~~~g~ilv~p~~~v~~W~~~~~~~l~~e~l~~l--l~~~pevliiGTG~~~~~l~p~   82 (132)
T 2gm2_A            5 QEHPDYTYALRAADGRHAKVNEQILQQSFILMPDELVEHWPVPSLGQLQPAHMDAV--LALNPAVILLGTGERQQFPSTD   82 (132)
T ss_dssp             CSSCCCCCCEEEECSSCEEETTEEECSEEEECSSCEECCCCCSSGGGCCTTTSHHH--HHHCCSEEEEECTTSCCCCCHH
T ss_pred             ccCCCCCceEEEEcCCEEEECCEEEEeCEEEeCCCceeecCCCCcccCCHHHHHHH--HhcCCCEEEECCCCCCCcCCHH
Confidence            455677889999999999999999999999999997 9999999999999999954  4456999999999999999999


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCc
Q 030786          127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  168 (171)
Q Consensus       127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~  168 (171)
                      ++++|+++||++|+|||++||||||+|++|||+|+|||+|++
T Consensus        83 ~~~~l~~~GI~vE~m~T~aAcrTyNiL~~EgR~VaAaLi~~~  124 (132)
T 2gm2_A           83 VLAACLTRGIGLEAMTNAAAARTYNVLASEGRRVALAMIVGG  124 (132)
T ss_dssp             HHHHHHHHTCEEEEECHHHHHHHHHHHHHHTCCEEEEEECCC
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEccCC
Confidence            999999999999999999999999999999999999999985

>3cpk_A Uncharacterized protein Q7W7N7_borpa; BPP2477, BER31, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Bordetella parapertussis 12822} PDB: 2k2e_A

Probab=100.00  E-value=3.7e-40  Score=258.68  Aligned_cols=122  Identities=31%  Similarity=0.435  Sum_probs=110.9

Q ss_pred             cCCCCCcceEEEEcCCeEEECCEEEeecEEEeCCce-eecCCCCCCCCChhhhhhhhhhCC-------------------
Q 030786           48 DNVPEDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLL-LSWTPKKFSEITPNCLSIFQLVRP-------------------  107 (171)
Q Consensus        48 ~~~~~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v-~~W~~~~~~~l~~e~L~~l~~l~p-------------------  107 (171)
                      ++...+.+.|++|++|+|+|||++|.||++++|++. ..|+++++++|+.++|+.+..+.+                   
T Consensus         5 ~~~~~~~~~I~~Y~~g~~~ing~~~~gsv~v~p~g~v~~W~~~~~~~i~~~~l~~l~~l~~~~~~~~~~~~~~~~~~~~~   84 (150)
T 3cpk_A            5 TDPATALNTVTAYGDGYIEVNQVRFSHAIAFAPEGPVASWPVQRPADITASLLQQAAGLAEVVRDPLAFLDEPEAGAGAR   84 (150)
T ss_dssp             --CCCCCCCEEEEETTEEEETTEEECSCEEECSSSCCEECCCSSGGGCCHHHHHHHHTCC--------------------
T ss_pred             ccCCCCCceEEEEcCCEEEECCEEEEcCEEEecCCceeecCCCChhhCCHHHHHHHHhcccccccchhhccccccccccc
Confidence            445667788999999999999999999999999876 999999999999999997666644                   


Q ss_pred             ---CCcEEEEeecCCCCCCCHHHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCcc
Q 030786          108 ---IPEILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYGV  169 (171)
Q Consensus       108 ---~PEvLIIGTG~~~~~l~p~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~~  169 (171)
                         +||+||||||.++++++|+++++|+++||+||+|+|++||||||+|++|||+|+|||||++-
T Consensus        85 p~~~pEvliiGTG~~~~~l~p~~~~~L~~~GIgvE~M~T~aA~rTyNiL~~EgRrVaaaLi~~~~  149 (150)
T 3cpk_A           85 PANAPEVLLVGTGRRQHLLGPEQVRPLLAMGVGVEAMDTQAAARTYNILMAEGRRVVVALLPDGD  149 (150)
T ss_dssp             ---CCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred             cCCCCCEEEEcCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence               89999999999999999999999999999999999999999999999999999999999863

>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A

Probab=100.00  E-value=3.6e-39  Score=245.26  Aligned_cols=111  Identities=14%  Similarity=0.218  Sum_probs=106.1

Q ss_pred             cceEEEEcCCeEEECCEEEee-cEEEeCCceeecC-----CCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCC-CCHH
Q 030786           54 QLRFQGYTDTGFTVNGVQYEG-SLLCIGNLLLSWT-----PKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEP-VNPE  126 (171)
Q Consensus        54 ~~~I~~y~~g~f~Ing~~y~g-svii~p~~v~~W~-----~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~-l~p~  126 (171)
                      ++.|++|++|+|+|||++|.| |++|+|+++..|+     .+++++++++||+.  +++++||+||||||.+.++ ++|+
T Consensus         3 ~~~I~~y~~g~~~ing~~~~~~siiv~p~~~~~w~w~~~g~~~~~~l~~~~l~~--ll~~~~evliiGtG~~~~~~~~~~   80 (122)
T 2ab1_A            3 SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVKE--VVEKGVQTLVIGRGMSEALKVPSS   80 (122)
T ss_dssp             CCCEEEEETTEEEETTCSCEESEEEEETTEEEEECHHHHTCCSSSCCCHHHHHH--HHTTCCSEEEEEECSSCCSCCCHH
T ss_pred             CCEEEEEcCCEEEECCEEEeCCCEEEECCccccCcccccCcCChhHCCHHHHHH--HhhCCCCEEEECCCCCCccCCCHH
Confidence            678999999999999999999 9999999999998     88999999999994  5788999999999999997 9999


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEecc
Q 030786          127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  166 (171)
Q Consensus       127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip  166 (171)
                      ++++|+++||++|+|+|++||||||+|++|||+|+|||+.
T Consensus        81 ~~~~l~~~gI~ve~m~T~~A~rtyN~L~~EgR~VaAal~~  120 (122)
T 2ab1_A           81 TVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFHS  120 (122)
T ss_dssp             HHHHHHHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred             HHHHHHHcCCEEEEeCHHHHHHHHHHHHhCCCcEEEEEee
Confidence            9999999999999999999999999999999999999974

>2cyj_A Hypothetical protein PH1505; conserved hypothetical protein, structural genomics, NPPSFA; HET: OCS; 1.50A {Pyrococcus horikoshii} SCOP: c.103.1.1

Probab=100.00  E-value=2.6e-35  Score=222.95  Aligned_cols=106  Identities=12%  Similarity=0.166  Sum_probs=96.0

Q ss_pred             ceEEEEcCCeEEECCEEEeecEEEeCCce---eecCCCC-----CCCCChhhhhhhhhhCCCCcEEEEeecCCC-CCCCH
Q 030786           55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP  125 (171)
Q Consensus        55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v---~~W~~~~-----~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~-~~l~p  125 (171)
                      +.|++|++|+|+|||++|.|||+|.|+++   ..|++..     +++|+++|++.  +++.+||+||||||.++ .++++
T Consensus         1 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~   78 (118)
T 2cyj_A            1 MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEK--YLVEDFDVLLVGTGIYGMLSLLP   78 (118)
T ss_dssp             CCEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHHT--TTTSCCSEEEEEECTTCCCEECH
T ss_pred             CceeEecCCEEEECCEEEeeCEEEeCCCcccccccCccccccCCcccCCHHHHHH--HHhcCCCEEEECCCCCccccCCH
Confidence            36999999999999999999999999987   6666543     68899999984  55667999999999995 78999


Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          126 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       126 ~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      +++++|+++  ++|+|||++||||||+|+ |||+|+|||.
T Consensus        79 ~~~~~l~~~--~ve~M~T~aAcrTYNiL~-EgRrV~aalh  115 (118)
T 2cyj_A           79 ESKKLVEDK--EVIEKPTKEALKLLEELW-GKKRILAIIH  115 (118)
T ss_dssp             HHHHHTTTS--EEEEECHHHHHHHHHHHB-TTBCEEEEEE
T ss_pred             HHHHHHHHC--CcEEeCHHHHHHHHHHHh-cCCeEEEEEe
Confidence            999999999  999999999999999999 9999999985

>1ihn_A Hypothetical protein MTH938; methanobacterium thermoautotrophicum, unknown function; 2.20A {Methanothermobacterthermautotrophicus} SCOP: c.103.1.1

Probab=99.97  E-value=3.2e-33  Score=210.13  Aligned_cols=100  Identities=19%  Similarity=0.155  Sum_probs=87.3

Q ss_pred             ceEEEEcCCeEEECCEEEeecEEEeCCce---eecCCCC-----CCCCChhhhhhhhhhCCCCcEEEEeecCCC-CCCCH
Q 030786           55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLL---LSWTPKK-----FSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNP  125 (171)
Q Consensus        55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v---~~W~~~~-----~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~-~~l~p  125 (171)
                      ..|++|++|+|+|||++|.+||+|.|+++   ..|++..     +++|+++|++.  +++.+||+||||||.++ .++++
T Consensus         2 ~~I~~yg~G~~~i~g~~~~~sviv~p~g~v~~~~w~~~~~~~gt~~~l~~~~~~~--ll~~~~evlliGTG~~~~~~~~~   79 (113)
T 1ihn_A            2 HMFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEE--LLEEKPESIIIGSGVHGALETGF   79 (113)
T ss_dssp             CCEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHHH--HHTTCCSEEEEECCTTCCCEESS
T ss_pred             CceeEEcCCEEEECCEEEeeCEEEeCCCcccccccCccccccCccccCCHHHHHH--HHhcCCCEEEECCCCCccccCCh
Confidence            56999999999999999999999999887   6666543     67899999984  55567999999999995 45667


Q ss_pred             HHHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          126 ELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       126 ~l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      +++         +|+|+|++||||||+|++|||+|+|||.
T Consensus        80 ~~~---------ve~M~T~aAcrTYNiL~~EgRrV~aalh  110 (113)
T 1ihn_A           80 RSD---------ATVLPTCEAIKRYNEERSAGRRVAAIIH  110 (113)
T ss_dssp             CCS---------CEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             hhE---------EEEcChHHHHHHHHHHHhCCCeEEEEEe
Confidence            664         9999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	171
d2fvta1	127	c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {	8e-35
d2fi9a1	118	c.103.1.1 (A:11-128) Hypothetical outer membrane p	5e-32
d2cyja1	118	c.103.1.1 (A:1-118) Hypothetical protein PH1505 {P	5e-22
d2q4qa1	121	c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C	8e-22
d1ihna_	113	c.103.1.1 (A:) Hypothetical protein MT938 (MTH938)	5e-18

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]} Length = 127

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

 Score =  116 bits (292), Expect = 8e-35
 Identities = 32/115 (27%), Positives = 51/115 (44%)

Query: 52  EDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEI 111
                   Y   GF   G+ ++GSLL + + +  W   K  +I    L          + 
Sbjct: 11  PRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDT 70

Query: 112 LILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
           LI+G G  +     +LR+ +R   + L+ + +  A  TYNI+  E R VAAAL+ 
Sbjct: 71  LIVGTGADVWIAPRQLREALRGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIA 125

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

 Score =  109 bits (273), Expect = 5e-32
 Identities = 26/114 (22%), Positives = 47/114 (41%), Gaps = 1/114 (0%)

Query: 53  DQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEIL 112
            +     Y + GF    + + GS++CI + +           T   +S         E+L
Sbjct: 4   GRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGI-DMTGPVPTQEDISRVLEESDQIEVL 62

Query: 113 ILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP 166
           ++G G  +  +  ELR  +    +  + + +  A  T+N+L  E R VAA L  
Sbjct: 63  LIGTGVELLRLPEELRVLLWEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFA 116

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 83.4 bits (206), Expect = 5e-22
 Identities = 15/115 (13%), Positives = 48/115 (41%), Gaps = 9/115 (7%)

Query: 55  LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSE---ITPNCLS---IFQLVRPI 108
           ++ +        ++G +++  ++   +  +    K+ S+    T + L    + + +   
Sbjct: 1   MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELEKYLVED 60

Query: 109 PEILILGCG-RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAA 162
            ++L++G G   +  + PE ++ +     ++    ++ A      L  + RI+A 
Sbjct: 61  FDVLLVGTGIYGMLSLLPESKKLVE--DKEVIEKPTKEALKLLEELWGKKRILAI 113

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]} Length = 121

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 83.0 bits (205), Expect = 8e-22
 Identities = 17/113 (15%), Positives = 37/113 (32%), Gaps = 9/113 (7%)

Query: 59  GYTDTGFTVNGVQYEGSLLCI---GNLLLSWT---PKKFSEITPNCLSIFQLVRPIPEIL 112
             +     V G         +   G+    W     +    + P    + ++V    + L
Sbjct: 7   SLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPA--DVKEVVEKGVQTL 64

Query: 113 ILGCG-RYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 164
           ++G G      V     ++++  G+ +  + +  A   YN L  +G  V    
Sbjct: 65  VIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVF 117

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 113

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 73.1 bits (179), Expect = 5e-18
 Identities = 21/114 (18%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 57  FQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFS---EITPNCLS---IFQLVRPIPE 110
           F        T  G +Y   ++   +  ++   K+ S     T + ++   + +L+   PE
Sbjct: 4   FSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELEELLEEKPE 63

Query: 111 ILILGCGRYIEPVNPELRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAAL 164
            +I+G G +                     + +  A   YN     GR VAA +
Sbjct: 64  SIIIGSGVHG--------ALETGFRSDATVLPTCEAIKRYNEERSAGRRVAAII 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d2fi9a1	118	Hypothetical outer membrane protein BH05650 {Barto	100.0
d2fvta1	127	Hypothetical protein RPA2829 {Rhodopseudomonas pal	100.0
d2q4qa1	121	Hypothetical protein PTD015 (C11orf67) {Human (Hom	100.0
d2cyja1	118	Hypothetical protein PH1505 {Pyrococcus horikoshii	100.0
d1ihna_	113	Hypothetical protein MT938 (MTH938) {Archaeon Meth	99.97

>d2fi9a1 c.103.1.1 (A:11-128) Hypothetical outer membrane protein BH05650 {Bartonella henselae [TaxId: 38323]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical outer membrane protein BH05650
species: Bartonella henselae [TaxId: 38323]

Probab=100.00  E-value=5.2e-42  Score=257.09  Aligned_cols=116  Identities=22%  Similarity=0.326  Sum_probs=108.8

Q ss_pred             CCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHH
Q 030786           52 EDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFI  131 (171)
Q Consensus        52 ~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l  131 (171)
                      +++..|+||++|+|+|||++|.||++|+|+.++.|+++. ++++.++++.+..+.++||+||||||.++++++++++++|
T Consensus         3 ~~~~~I~~Yg~g~f~I~g~~y~~siii~p~~i~~w~~~~-~~~~~~~~~~~~~~~~~peilliGtG~~~~~~~~~~~~~l   81 (118)
T d2fi9a1           3 PGRAPIDAYGNGGFRFADMSHRGSIICIPSGIYGIDMTG-PVPTQEDISRVLEESDQIEVLLIGTGVELLRLPEELRVLL   81 (118)
T ss_dssp             SSCCCEEEEETTEEEETTEEEESEEEEETTEEEEECCSS-SSCCTGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHHHH
T ss_pred             CCCCcEeeecCCEEEECCEEEecCEEEccCcEEEccCCC-cccCHHHHHHHHhccCCCCEEEEecCccccCCCHHHHHHH
Confidence            567789999999999999999999999999999998765 6788999987666778999999999999999999999999


Q ss_pred             HHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccCc
Q 030786          132 RSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPYG  168 (171)
Q Consensus       132 ~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~~  168 (171)
                      +++||++|+|+|++||||||+|++|||+|+|||||.+
T Consensus        82 ~~~gI~~EvM~T~aAcrTfNvL~sEgR~VaAaLipi~  118 (118)
T d2fi9a1          82 WEKRISSDTMSTGAAVRTFNVLLAEDRAVAALLFAVE  118 (118)
T ss_dssp             HHTTCEEEEECHHHHHHHHHHHHHTTCCEEEEECCCC
T ss_pred             HHcCCeEEEeCcHHHHHHHHHHHhcCccEEEEEEecC
Confidence            9999999999999999999999999999999999974

>d2fvta1 c.103.1.1 (A:1-127) Hypothetical protein RPA2829 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein RPA2829
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=100.00  E-value=1.8e-42  Score=262.87  Aligned_cols=116  Identities=28%  Similarity=0.383  Sum_probs=111.4

Q ss_pred             CCcceEEEEcCCeEEECCEEEeecEEEeCCceeecCCCCCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHHHHHHH
Q 030786           52 EDQLRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPKKFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPELRQFI  131 (171)
Q Consensus        52 ~~~~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~l~~~l  131 (171)
                      .++..|++|++|+|+|||++|.||++++|+.++.|+++++++++.++++.+..++++||+||||||+++.+++++++++|
T Consensus        11 ~~~~~I~~Yg~g~f~I~g~~y~~siii~p~~~~~w~~~~~~~l~~~~l~~l~~l~~~peilliGtG~~~~~~~~~~~~~l   90 (127)
T d2fvta1          11 PRTAAIDAYGKGGFYFAGMSHQGSLLFLPDAVWGWDVTKPEQIDRYSLQRVFDNANAIDTLIVGTGADVWIAPRQLREAL   90 (127)
T ss_dssp             CSCCCCCCEETTEEECSSSEECSEEEECSSCEEEESCCSTTCCCTTTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHH
T ss_pred             CCCCceEeeCCCeEEECCEEEecCEEEECCceecCCCCCcccCCHHHHHHHHhcCCCCCEEEEecCCccCCCCHHHHHHH
Confidence            45677999999999999999999999999999999999999999999998777889999999999999999999999999


Q ss_pred             HHcCCeEEEeChHHHHHHHHHhhhccceeEEEeccC
Q 030786          132 RSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLPY  167 (171)
Q Consensus       132 ~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip~  167 (171)
                      +++||++|+|+|++||||||+|++|||+|+|||||+
T Consensus        91 ~~~gI~vE~M~T~aAcrTfNvL~~EgR~V~AaLip~  126 (127)
T d2fvta1          91 RGVNVVLDTMQTGPAIRTYNIMIGERRRVAAALIAV  126 (127)
T ss_dssp             HTTTCEEEEECHHHHHHHHHHHHHHTSCEEEEEECC
T ss_pred             HHCCCEEEEeCcHHHHHHHHHHHhcCCceEEEEecC
Confidence            999999999999999999999999999999999996

>d2q4qa1 c.103.1.1 (A:2-122) Hypothetical protein PTD015 (C11orf67) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PTD015 (C11orf67)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=9.7e-35  Score=219.04  Aligned_cols=110  Identities=15%  Similarity=0.227  Sum_probs=99.5

Q ss_pred             cceEEEEcCCeEEECCEEEe-ecEEEeCCceeecCCC-----CCCCCChhhhhhhhhhCCCCcEEEEeecCCC-CCCCHH
Q 030786           54 QLRFQGYTDTGFTVNGVQYE-GSLLCIGNLLLSWTPK-----KFSEITPNCLSIFQLVRPIPEILILGCGRYI-EPVNPE  126 (171)
Q Consensus        54 ~~~I~~y~~g~f~Ing~~y~-gsvii~p~~v~~W~~~-----~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~-~~l~p~  126 (171)
                      ...|++|++|+|+|+|..|. ++++|+|+++..|+++     ++..++.+++.  ++++++||+||||||++. .+++++
T Consensus         2 ~p~I~~~s~G~i~i~G~~~~~~di~v~P~g~~~w~~~~~g~~~~~~l~~~~l~--~~l~~~peilliGtG~~~~~~l~~~   79 (121)
T d2q4qa1           2 SPEIASLSWGQMKVKGSNTTYKDCKVWPGGSRTWDWRETGTEHSPGVQPADVK--EVVEKGVQTLVIGRGMSEALKVPSS   79 (121)
T ss_dssp             CCEEEEEETTEEEEETCSCCCSSEEEETTEEEECCGGGTTCCSSSCSCHHHHH--HHHTTCCSEEEEECCSSCCSCCCHH
T ss_pred             CCeeeeeeceeEEEcCeeeecCCEEEecCCceecccccCCCCcccccCHHHHH--HHhccCCCEEEEcCCCCcccCCCHH
Confidence            45799999999999999997 6999999999999753     45778888876  577899999999999874 568999


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      ++++|+++||++|+|+|++||||||+|++|||+|+|||.
T Consensus        80 ~~~~l~~~gi~ve~m~T~~AcrtyNvL~~EgR~V~Aalh  118 (121)
T d2q4qa1          80 TVEYLKKHGIDVRVLQTEQAVKEYNALVAQGVRVGGVFH  118 (121)
T ss_dssp             HHHHHHTTTCEEEEECHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred             HHHHHHHcCCceEEeCHHHHHHHHHHHHhCCCcEEEEEe
Confidence            999999999999999999999999999999999999985

>d2cyja1 c.103.1.1 (A:1-118) Hypothetical protein PH1505 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein PH1505
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=100.00  E-value=1.2e-33  Score=211.33  Aligned_cols=107  Identities=11%  Similarity=0.120  Sum_probs=90.8

Q ss_pred             ceEEEEcCCeEEECCEEEeecEEEeCCceeecCCC--------CCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHH
Q 030786           55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPK--------KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPE  126 (171)
Q Consensus        55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~--------~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~  126 (171)
                      +.|++|++|+|+|||++|++|++|+|+++..|++.        +.++++.++++  .+++++||+||||||++..++.++
T Consensus         1 ~~I~~~~~G~i~I~g~~y~~siiV~P~g~i~~~~~~~s~~~~~t~~~l~~~dl~--~~l~~~peilliGtG~~~~~~~~~   78 (118)
T d2cyja1           1 MKIEEVRFGLVKIDGKEFDHDIVIYPSGRIERRMKEISKKKHGTSHKLDPEELE--KYLVEDFDVLLVGTGIYGMLSLLP   78 (118)
T ss_dssp             CCEEEEETTEEEETTEEESSCEEECTTSCEEECCTHHHHHHHSSTTEECHHHHH--TTTTSCCSEEEEEECTTCCCEECH
T ss_pred             CeeccccCCEEEECCEEEecCEEEcCCCccccccccccccccCCcccCCHHHHH--HHhccCCCEEEEecCCCccCCChH
Confidence            46999999999999999999999999998887654        57789999987  456789999999999997765555


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEec
Q 030786          127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALL  165 (171)
Q Consensus       127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALi  165 (171)
                      ..+.+. +||++|+|+|++||||||+|++|+| |+|||.
T Consensus        79 ~~~~~~-~~i~ve~m~T~~AcrtyNvL~~e~R-v~A~lh  115 (118)
T d2cyja1          79 ESKKLV-EDKEVIEKPTKEALKLLEELWGKKR-ILAIIH  115 (118)
T ss_dssp             HHHHHT-TTSEEEEECHHHHHHHHHHHBTTBC-EEEEEE
T ss_pred             HHHHHH-hCCCEEEEChHHHHHHHHHHhcCCc-eEEEEE
Confidence            444444 5999999999999999999999976 777764

>d1ihna_ c.103.1.1 (A:) Hypothetical protein MT938 (MTH938) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: MTH938-like
superfamily: MTH938-like
family: MTH938-like
domain: Hypothetical protein MT938 (MTH938)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.97  E-value=1.7e-31  Score=198.70  Aligned_cols=102  Identities=20%  Similarity=0.186  Sum_probs=88.7

Q ss_pred             ceEEEEcCCeEEECCEEEeecEEEeCCceeecCCC--------CCCCCChhhhhhhhhhCCCCcEEEEeecCCCCCCCHH
Q 030786           55 LRFQGYTDTGFTVNGVQYEGSLLCIGNLLLSWTPK--------KFSEITPNCLSIFQLVRPIPEILILGCGRYIEPVNPE  126 (171)
Q Consensus        55 ~~I~~y~~g~f~Ing~~y~gsvii~p~~v~~W~~~--------~~~~l~~e~L~~l~~l~p~PEvLIIGTG~~~~~l~p~  126 (171)
                      ..|++|++|+|+|||++|++||+|+|+++..|+..        ++++++.+++.  .+++.+||++|||||+...++.  
T Consensus         2 ~~~~~~~~G~~~I~G~~Y~~sViv~p~g~v~~~~~~~s~~~~~t~~~l~~~dl~--~ll~~~peiiliGtG~~~~~~~--   77 (113)
T d1ihna_           2 HMFSDCRFGSVTYRGREYRSDIVVHVDGSVTPRRKEISRRKYGTSHVMAEEELE--ELLEEKPESIIIGSGVHGALET--   77 (113)
T ss_dssp             CCEEEEETTEEEETTEEECSCEEECTTSCEEECCHHHHHHHHSSTTEECTHHHH--HHHTTCCSEEEEECCTTCCCEE--
T ss_pred             ccccceeccEEEECCEEeecCEEEcCCCceecccccccccccCccccCCHHHHH--HHHhcCCCEEEEecCccccccc--
Confidence            46999999999999999999999999987654432        57889999987  4667789999999999976543  


Q ss_pred             HHHHHHHcCCeEEEeChHHHHHHHHHhhhccceeEEEecc
Q 030786          127 LRQFIRSTGMKLEAIDSRNAASTYNILNEEGRIVAAALLP  166 (171)
Q Consensus       127 l~~~l~~~GI~vEvMdT~aAcrTyNiL~sEGR~VaAALip  166 (171)
                            ..||++|+|+|++||||||+|++|||+|+|+|-.
T Consensus        78 ------~~~i~~e~m~T~~AcrtyN~L~~egR~v~A~lh~  111 (113)
T d1ihna_          78 ------GFRSDATVLPTCEAIKRYNEERSAGRRVAAIIHV  111 (113)
T ss_dssp             ------SSCCSCEEECHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             ------CCCCcEEEEChHHHHHHHHHHHhCCCeEEEEEEe
Confidence                  3599999999999999999999999999999953