Citrus Sinensis ID: 030823

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccHHHHHHHccccccEEEEEEccHHHHHHHHHHHHccccccccccEEEEcccccccccccccEEEEcccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHccccccccEEEcccEEEccccccccccccccEEEEcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHcccEEEccccHHHHHHHHccccccEEEEEEcccHHHHHHHHHHHHccccccccEEEEEEcccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mrafgafqRSSLLLRRRrannepyalvpsgsfctdngfettsngssrvSIFDRHLKRKQRDRaawltrpndsfVDAVAENLLDRLEDCRKtfptalclggSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQqdahndnietcfvvgdeeflplkeRYACRFFVLALD
Flexible Loop (DISEMBL)
mrafgafqrsslllrRRRANnepyalvpsgsfctdngfettsngssrvsifdrhLKRKQRdraawltrpndsfvDAVAENLLDRLEDCRKTfptalclggsleaVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Low Complexity Region (SEG)
MRAFGAFQrsslllrrrrANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Disordered region (IsUnstruct)
************************ALV**GSFCT***************IF**********RAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA**
Disordered Region (DISOPRED)
********RSSLLLRRRRANNEPYALV**********************IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Disordered Region (DISEMBL)
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Disordered Region (DISPRO)
***********LLLRRRRANNEPYALVPSGSFCTDN********SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRAFGAFQRSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLALD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
O80543	355	Putative methyltransferas	yes	no	0.853	0.411	0.636	5e-48
Q5TEU4	345	NADH dehydrogenase [ubiqu	yes	no	0.649	0.321	0.340	1e-08
Q5RBS1	345	NADH dehydrogenase [ubiqu	yes	no	0.631	0.313	0.327	4e-08
A2APY7	343	NADH dehydrogenase [ubiqu	yes	no	0.666	0.332	0.310	5e-07
B2GV71	343	NADH dehydrogenase [ubiqu	yes	no	0.596	0.297	0.310	8e-07
A3KP37	321	NADH dehydrogenase [ubiqu	yes	no	0.608	0.323	0.315	3e-06

>sp|O80543|Y1280_ARATH Putative methyltransferase At1g22800 OS=Arabidopsis thaliana GN=At1g22800 PE=2 SV=2

 Score =  190 bits (482), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 120/154 (77%), Gaps = 8/154 (5%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           LL+R   ++  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
           +R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72  SRQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131

Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
           DM+K C+DAQ D+ +++IET + VGDEEFLP+KE
Sbjct: 132 DMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKE 165

Arabidopsis thaliana (taxid: 3702)

>sp|Q5TEU4|NDUF5_HUMAN NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Homo sapiens GN=NDUFAF5 PE=1 SV=1

 Score = 59.3 bits (142), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 45/132 (34%), Positives = 64/132 (48%), Gaps = 21/132 (15%)

Query: 39  ETTSNGSSR-------VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCR 89
           E TS  S R       ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  
Sbjct: 28  EVTSGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIP 87

Query: 90  KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCF 147
           + FP AL LG           GRG I + +  +T     +  + ++A +++    I T  
Sbjct: 88  RNFPLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVS 137

Query: 148 VVGDEEFLPLKE 159
           V+ DEEFLP KE
Sbjct: 138 VLADEEFLPFKE 149

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5RBS1|NDUF5_PONAB NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Pongo abelii GN=NDUFAF5 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 40/122 (32%), Positives = 60/122 (49%), Gaps = 14/122 (11%)

Query: 42  SNGSSRVSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLG 99
           S     ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + FP AL LG
Sbjct: 38  STSPRTLNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNFPLALDLG 97

Query: 100 GSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPL 157
                      GRG I + +  +T     +  + ++A +++    I T  V+ DEEFLP 
Sbjct: 98  C----------GRGYIAQYLNKETIGKFFQADIAENALKNSLETEIPTVSVLADEEFLPF 147

Query: 158 KE 159
           +E
Sbjct: 148 RE 149

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Pongo abelii (taxid: 9601)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A2APY7|NDUF5_MOUSE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Mus musculus GN=Ndufaf5 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 66/129 (51%), Gaps = 15/129 (11%)

Query: 36  NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
           +G   + + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct: 31  SGVPPSGSTSPRALNIFDRELKRKQKNWAARQPDPMKFDYLKEEVGSRIADRVYDIARDF 90

Query: 93  PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVG 150
           P AL +G           GRG I + +  +T   + +  + + A +++   +I T  ++ 
Sbjct: 91  PLALDIGC----------GRGYIAQHLDKETVGKIFQTDIAEHALKNSLETDIPTVNILA 140

Query: 151 DEEFLPLKE 159
           DEEFLP +E
Sbjct: 141 DEEFLPFQE 149

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|B2GV71|NDUF5_RAT NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Rattus norvegicus GN=Ndufaf5 PE=2 SV=1

 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 48  VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
           ++IFDR LKRKQ++ AA    P   D   + +   + DR+ D  + FP AL +G      
Sbjct: 44  LNIFDRELKRKQKNWAARQPEPMKFDYLKEEIGSRIADRVYDIARDFPLALDIGC----- 98

Query: 106 RRLLRGRGGIEKLIMMDTSYDMLK--LCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
                GRG I + +  +T   + +  + + A +++   +I T  ++ DEEFLP  E
Sbjct: 99  -----GRGYIAQHLNKETVGKIFQTDIAEHALKNSIETDIPTVNILADEEFLPFPE 149

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|A3KP37|NDUF5_DANRE NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5 OS=Danio rerio GN=ndufaf5 PE=2 SV=1

 Score = 51.6 bits (122), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 48  VSIFDRHLKRKQRDRAAWL--TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAV 105
           +++FDR +KR+Q+D A+ L  +   D   + V   + DR+ D  +TFP AL +G     +
Sbjct: 24  MNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGCGRSHI 83

Query: 106 RRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
              L  +  +E+L + D S   L+       +    +I    V+ DEEFLP KE
Sbjct: 84  AEHL-SKEVVERLFLTDISSSSLR-------NRKTSDIPAQCVMADEEFLPFKE 129

Putative methyltransferase involved in mitochondrial complex I assembly at early stages.

Danio rerio (taxid: 7955)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
225460187	339	PREDICTED: uncharacterized protein At1g2	0.818	0.412	0.734	3e-53
297741046	348	unnamed protein product [Vitis vinifera]	0.807	0.396	0.731	4e-53
255574259	336	conserved hypothetical protein [Ricinus	0.783	0.398	0.727	2e-51
449447597	177	PREDICTED: putative methyltransferase At	0.871	0.841	0.677	8e-49
297845308	355	hypothetical protein ARALYDRAFT_889792 [	0.853	0.411	0.649	2e-47
15219953	355	S-adenosyl-L-methionine-dependent methyl	0.853	0.411	0.636	2e-46
449518625	343	PREDICTED: putative methyltransferase At	0.836	0.416	0.629	1e-41
413916684	154	hypothetical protein ZEAMMB73_760336 [Ze	0.789	0.876	0.625	7e-41
223975545	343	unknown [Zea mays] gi|413916686|gb|AFW56	0.777	0.387	0.626	1e-40
413916685	181	hypothetical protein ZEAMMB73_760336 [Ze	0.777	0.734	0.626	3e-40

>gi|225460187|ref|XP_002279511.1| PREDICTED: uncharacterized protein At1g22800 [Vitis vinifera]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 105/143 (73%), Positives = 115/143 (80%), Gaps = 3/143 (2%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RR   EP++    GS  TDNG       SSRV IFDRHLKRKQRDRAAWL  P D  VD 
Sbjct: 10  RRRVQEPFSRFFYGSLSTDNG---DGFQSSRVKIFDRHLKRKQRDRAAWLACPKDPLVDT 66

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136
           VAENLLDRLEDC+K FPTALCLGGSLEA+RRLLRGRG IEKLIMMDTSYDM+KLC+DA+Q
Sbjct: 67  VAENLLDRLEDCKKAFPTALCLGGSLEAIRRLLRGRGAIEKLIMMDTSYDMVKLCRDAEQ 126

Query: 137 DAHNDNIETCFVVGDEEFLPLKE 159
           D  N++IET FVVGDEEFLP+KE
Sbjct: 127 DVPNESIETSFVVGDEEFLPIKE 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297741046|emb|CBI31358.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 117/145 (80%), Gaps = 7/145 (4%)

Query: 17  RRANNEPYALVPSGSFCTDNG--FETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFV 74
           RR   EP++    GS  TDNG  F+     SSRV IFDRHLKRKQRDRAAWL  P D  V
Sbjct: 19  RRRVQEPFSRFFYGSLSTDNGDGFQ-----SSRVKIFDRHLKRKQRDRAAWLACPKDPLV 73

Query: 75  DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA 134
           D VAENLLDRLEDC+K FPTALCLGGSLEA+RRLLRGRG IEKLIMMDTSYDM+KLC+DA
Sbjct: 74  DTVAENLLDRLEDCKKAFPTALCLGGSLEAIRRLLRGRGAIEKLIMMDTSYDMVKLCRDA 133

Query: 135 QQDAHNDNIETCFVVGDEEFLPLKE 159
           +QD  N++IET FVVGDEEFLP+KE
Sbjct: 134 EQDVPNESIETSFVVGDEEFLPIKE 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255574259|ref|XP_002528044.1| conserved hypothetical protein [Ricinus communis] gi|223532574|gb|EEF34362.1| conserved hypothetical protein [Ricinus communis]

 Score =  206 bits (525), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 104/143 (72%), Positives = 116/143 (81%), Gaps = 9/143 (6%)

Query: 17  RRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDA 76
           RRA    YA   S S+CT+         +SRV IFDRHLKR QRDRAAWL RPNDSFV+A
Sbjct: 13  RRAYEPIYAFFQSTSYCTE--------ANSRVKIFDRHLKRVQRDRAAWLMRPNDSFVNA 64

Query: 77  VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ 136
           VA+NLLDRLEDC+KTFP+AL LGGSL+A+RR LRGRG IEKLIMMDTSYDM+KLCKDA  
Sbjct: 65  VADNLLDRLEDCKKTFPSALFLGGSLDAIRRSLRGRGSIEKLIMMDTSYDMIKLCKDAHY 124

Query: 137 DAHNDNIETCFVVGDEEFLPLKE 159
           DA N+NIET FVVGDEEFLP+KE
Sbjct: 125 DA-NENIETSFVVGDEEFLPVKE 146

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447597|ref|XP_004141554.1| PREDICTED: putative methyltransferase At1g22800-like [Cucumis sativus]

 Score =  198 bits (503), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 105/155 (67%), Positives = 121/155 (78%), Gaps = 6/155 (3%)

Query: 9   RSSLLLRRRRANNEPYALVPSGSFCT--DNGFETTSNG--SSRVSIFDRHLKRKQRDRAA 64
           RS  LLR  R  + P +++   SFCT  DN      +G  SS+V +FDR LKRKQRDRAA
Sbjct: 11  RSFSLLRSTRWRDSPNSIL-CCSFCTGDDNYDGRIGDGMQSSKVKVFDRDLKRKQRDRAA 69

Query: 65  WLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS 124
           WL RP DS VD+VAENLLDRLEDC+KTFPTALCLGGSLEA+RRLLRGRG +EKLIMMD S
Sbjct: 70  WLMRPKDSLVDSVAENLLDRLEDCKKTFPTALCLGGSLEAIRRLLRGRGSVEKLIMMDAS 129

Query: 125 YDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
           +DM+KLCKD   DAH  ++ET FVVGDEEFLP+KE
Sbjct: 130 HDMIKLCKD-DTDAHVQDVETSFVVGDEEFLPIKE 163

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297845308|ref|XP_002890535.1| hypothetical protein ARALYDRAFT_889792 [Arabidopsis lyrata subsp. lyrata] gi|297336377|gb|EFH66794.1| hypothetical protein ARALYDRAFT_889792 [Arabidopsis lyrata subsp. lyrata]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 100/154 (64%), Positives = 121/154 (78%), Gaps = 8/154 (5%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           +LRR    +  + + L+ S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  MLRRVPEESTKKSHTLLASLSFSTEGSYGGDGELQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
           +R  NDSFVDAVAENLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72  SRQKNDSFVDAVAENLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131

Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
           DM+K C+DAQ+D+ +++IET + VGDEEFLP+KE
Sbjct: 132 DMIKSCRDAQEDSLDNSIETSYFVGDEEFLPVKE 165

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15219953|ref|NP_173694.1| S-adenosyl-L-methionine-dependent methyltransferases-like protein [Arabidopsis thaliana] gi|84028281|sp|O80543.2|Y1280_ARATH RecName: Full=Putative methyltransferase At1g22800 gi|30102638|gb|AAP21237.1| At1g22800 [Arabidopsis thaliana] gi|110736002|dbj|BAE99975.1| hypothetical protein [Arabidopsis thaliana] gi|332192169|gb|AEE30290.1| S-adenosyl-L-methionine-dependent methyltransferases-like protein [Arabidopsis thaliana]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 98/154 (63%), Positives = 120/154 (77%), Gaps = 8/154 (5%)

Query: 13  LLRR--RRANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWL 66
           LL+R   ++  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL
Sbjct: 13  LLKRVPEKSTKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWL 71

Query: 67  TR-PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY 125
           +R  NDSFVDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSY
Sbjct: 72  SRQKNDSFVDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSY 131

Query: 126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
           DM+K C+DAQ D+ +++IET + VGDEEFLP+KE
Sbjct: 132 DMIKSCRDAQDDSLDNSIETSYFVGDEEFLPVKE 165

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449518625|ref|XP_004166337.1| PREDICTED: putative methyltransferase At1g22800-like [Cucumis sativus]

 Score =  174 bits (440), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 95/151 (62%), Positives = 111/151 (73%), Gaps = 8/151 (5%)

Query: 9   RSSLLLRRRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTR 68
           RS  LLR  R  + P +++   SFCT +      N   R+S   +  K K RDRAAWL R
Sbjct: 11  RSFSLLRSTRWRDSPNSIL-CCSFCTGD-----DNYDGRISDGMQSSKVK-RDRAAWLMR 63

Query: 69  PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML 128
           P DS VD+VAENLLDRLEDC+KTFPTALCLGGSLEA+RRLLRGRG +EKLIMMD S+DM+
Sbjct: 64  PKDSLVDSVAENLLDRLEDCKKTFPTALCLGGSLEAIRRLLRGRGSVEKLIMMDASHDMI 123

Query: 129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
           KLCKD    AH  ++ET FVVGDEEFLP+KE
Sbjct: 124 KLCKD-DTGAHVQDVETSFVVGDEEFLPIKE 153

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916684|gb|AFW56616.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  171 bits (434), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 85/136 (62%), Positives = 102/136 (75%), Gaps = 1/136 (0%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145
           EDCRK FP+ALCLGGS  AVRRLLRGRGGIE+LIMMD S DM+K  +++ ++A  D  ET
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIERLIMMDMSADMVKKWRES-ENATGDGPET 138

Query: 146 CFVVGDEEFLPLKERY 161
            FV+GDEEFLP+KER 
Sbjct: 139 HFVIGDEEFLPIKERI 154

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223975545|gb|ACN31960.1| unknown [Zea mays] gi|413916686|gb|AFW56618.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145
           EDCRK FP+ALCLGGS  AVRRLLRGRGGIE+LIMMD S DM+K  +++ ++A  D  ET
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIERLIMMDMSADMVKKWRES-ENATGDGPET 138

Query: 146 CFVVGDEEFLPLKE 159
            FV+GDEEFLP+KE
Sbjct: 139 HFVIGDEEFLPIKE 152

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413916685|gb|AFW56617.1| hypothetical protein ZEAMMB73_760336 [Zea mays]

 Score =  169 bits (429), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/134 (62%), Positives = 101/134 (75%), Gaps = 1/134 (0%)

Query: 26  LVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRL 85
           L+P   F + +  +   +G  RV IFDR LKR+ RDRAAW+ R  D  VDAVAENLLDRL
Sbjct: 20  LLPKRHFSSSSAPDGLDDGGGRVKIFDRDLKRRHRDRAAWVMRETDGLVDAVAENLLDRL 79

Query: 86  EDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET 145
           EDCRK FP+ALCLGGS  AVRRLLRGRGGIE+LIMMD S DM+K  +++ ++A  D  ET
Sbjct: 80  EDCRKAFPSALCLGGSAGAVRRLLRGRGGIERLIMMDMSADMVKKWRES-ENATGDGPET 138

Query: 146 CFVVGDEEFLPLKE 159
            FV+GDEEFLP+KE
Sbjct: 139 HFVIGDEEFLPIKE 152

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2199650	355	AT1G22800 [Arabidopsis thalian	0.818	0.394	0.650	3.1e-44
UNIPROTKB|F1NUD7	305	F1NUD7 "Uncharacterized protei	0.602	0.337	0.389	4.8e-10
UNIPROTKB|E1C306	346	E1C306 "Uncharacterized protei	0.602	0.297	0.389	6.7e-10
UNIPROTKB|B3KR61	267	NDUFAF5 "HCG1811060, isoform C	0.666	0.426	0.333	7e-09
UNIPROTKB|Q5TEU4	345	NDUFAF5 "NADH dehydrogenase [u	0.666	0.330	0.333	1.4e-08
UNIPROTKB|Q5RBS1	345	NDUFAF5 "NADH dehydrogenase [u	0.666	0.330	0.325	3.8e-08
ZFIN|ZDB-GENE-070410-110	322	ndufaf5 "NADH dehydrogenase (u	0.625	0.332	0.344	7e-08
UNIPROTKB|F1SBJ3	345	NDUFAF5 "Uncharacterized prote	0.666	0.330	0.317	6e-07
UNIPROTKB|F1MQP4	345	C13H20orf7 "Uncharacterized pr	0.666	0.330	0.310	9.9e-07
UNIPROTKB|E2RF12	345	NDUFAF5 "Uncharacterized prote	0.666	0.330	0.317	9.9e-07

TAIR|locus:2199650 AT1G22800 [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 95/146 (65%), Positives = 115/146 (78%)

Query:    19 ANNEPYALVPSGSFCTDNGF----ETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSF 73
             +  + +  + S SF T+  +    E   N SS+V IFDR LKR  RDRAAWL+R  NDSF
Sbjct:    21 STKQAHTFLASLSFSTEGAYGGDGEFQQN-SSKVKIFDRDLKRIHRDRAAWLSRQKNDSF 79

Query:    74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD 133
             VDAVA+NLLDRLEDC+K+FPTA CLGGSL AV+RLLRGRGGIEKLIMMDTSYDM+K C+D
Sbjct:    80 VDAVADNLLDRLEDCKKSFPTAFCLGGSLGAVKRLLRGRGGIEKLIMMDTSYDMIKSCRD 139

Query:   134 AQQDAHNDNIETCFVVGDEEFLPLKE 159
             AQ D+ +++IET + VGDEEFLP+KE
Sbjct:   140 AQDDSLDNSIETSYFVGDEEFLPVKE 165

GO:0005739 "mitochondrion" evidence=ISM

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

UNIPROTKB|F1NUD7 F1NUD7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 4.8e-10, P = 4.8e-10
 Identities = 44/113 (38%), Positives = 62/113 (54%)

Query:    49 SIFDRHLKRKQRDRAAWLTRPND-SFV-DAVAENLLDRLEDCRKTFPTALCLGGSLEAVR 106
             S FDR LKRKQ++ AA   RP +  ++ D V   + DR+ D  +TFP AL LG     + 
Sbjct:     9 SPFDRRLKRKQKNWAALRPRPAECEYLRDEVGSGVADRVLDIPRTFPLALDLGSGRGYIA 68

Query:   107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
             R L  +  IEKL+ +D + ++ K   +++       I T  VV DEE LP KE
Sbjct:    69 RHLN-QEVIEKLVQVDIAENVFKSTAESE-------IPTVSVVADEECLPFKE 113

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1C306 E1C306 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 148 (57.2 bits), Expect = 6.7e-10, P = 6.7e-10
 Identities = 44/113 (38%), Positives = 62/113 (54%)

Query:    49 SIFDRHLKRKQRDRAAWLTRPND-SFV-DAVAENLLDRLEDCRKTFPTALCLGGSLEAVR 106
             S FDR LKRKQ++ AA   RP +  ++ D V   + DR+ D  +TFP AL LG     + 
Sbjct:    46 SPFDRRLKRKQKNWAALRPRPAECEYLRDEVGSGVADRVLDIPRTFPLALDLGSGRGYIA 105

Query:   107 RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
             R L  +  IEKL+ +D + ++ K   +++       I T  VV DEE LP KE
Sbjct:   106 RHLN-QEVIEKLVQVDIAENVFKSTAESE-------IPTVSVVADEECLPFKE 150

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

UNIPROTKB|B3KR61 NDUFAF5 "HCG1811060, isoform CRA_c" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 7.0e-09, P = 7.0e-09
 Identities = 43/129 (33%), Positives = 64/129 (49%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ 
Sbjct:    91 PLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLA 140

Query:   151 DEEFLPLKE 159
             DEEFLP KE
Sbjct:   141 DEEFLPFKE 149

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q5TEU4 NDUFAF5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5" [Homo sapiens (taxid:9606)]

 Score = 136 (52.9 bits), Expect = 1.4e-08, P = 1.4e-08
 Identities = 43/129 (33%), Positives = 64/129 (49%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAARQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ 
Sbjct:    91 PLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSSETEIPTVSVLA 140

Query:   151 DEEFLPLKE 159
             DEEFLP KE
Sbjct:   141 DEEFLPFKE 149

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IDA

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IMP

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q5RBS1 NDUFAF5 "NADH dehydrogenase [ubiquinone] 1 alpha subcomplex assembly factor 5" [Pongo abelii (taxid:9601)]

 Score = 132 (51.5 bits), Expect = 3.8e-08, P = 3.8e-08
 Identities = 42/129 (32%), Positives = 64/129 (49%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPRGSTSPRTLNIFDRDLKRKQKNWAAQQPEPTKFDYLKEEVGSRIADRVYDIPRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL LG           GRG I + +  +T   +    + ++A +++    I T  V+ 
Sbjct:    91 PLALDLGC----------GRGYIAQYLNKETIGKFFQADIAENALKNSLETEIPTVSVLA 140

Query:   151 DEEFLPLKE 159
             DEEFLP +E
Sbjct:   141 DEEFLPFRE 149

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=ISS

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=ISS

ZFIN|ZDB-GENE-070410-110 ndufaf5 "NADH dehydrogenase (ubiquinone) complex I, assembly factor 5" [Danio rerio (taxid:7955)]

 Score = 129 (50.5 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 41/119 (34%), Positives = 62/119 (52%)

Query:    45 SSR--VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTFPTALCLGG 100
             SSR  +++FDR +KR+Q+D A+ L   +  D   + V   + DR+ D  +TFP AL +G 
Sbjct:    20 SSRQGMNVFDRSMKRRQKDWASSLLDSSKYDYLREEVGSRVADRVYDVARTFPLALDVGC 79

Query:   101 SLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE 159
                 +   L  +  +E+L + D S   L+  K +   A       C V+ DEEFLP KE
Sbjct:    80 GRSHIAEHL-SKEVVERLFLTDISSSSLRNRKKSDIPAQ------C-VMADEEFLPFKE 130

GO:0008152 "metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|F1SBJ3 NDUFAF5 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 121 (47.7 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 41/129 (31%), Positives = 63/129 (48%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G  +  + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSSRGSTSPRALNIFDRDLKRKQKNWAARQPEPMKFDYLKEEVGSRIADRVYDITRDF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
             P AL +G           GRG I + +  +T   +    + + A ++     I T  V+ 
Sbjct:    91 PLALDVGC----------GRGYIAQHLNKETVGKFFQTDIAEHALKNTLEMEIPTVSVLA 140

Query:   151 DEEFLPLKE 159
             DEEFLP +E
Sbjct:   141 DEEFLPFRE 149

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|F1MQP4 C13H20orf7 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 119 (46.9 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 40/129 (31%), Positives = 63/129 (48%)

Query:    36 NGFETTSNGSSRV-SIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G  + S  S +  +IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGASSPSGASPKAFNIFDRDLKRKQKNWAARQPEPMKFDYLKEEVGSRIADRVYDIARDF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
               AL +G           GRG + + +  +T   +    + ++A ++A    I T  V+ 
Sbjct:    91 RLALDVGC----------GRGYVAEHLNKETVGKFFQTDIAENALKNALETEIPTVSVLA 140

Query:   151 DEEFLPLKE 159
             DEEFLP +E
Sbjct:   141 DEEFLPFRE 149

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E2RF12 NDUFAF5 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 119 (46.9 bits), Expect = 9.9e-07, P = 9.9e-07
 Identities = 41/129 (31%), Positives = 63/129 (48%)

Query:    36 NGFETTSNGSSR-VSIFDRHLKRKQRDRAAWLTRPN--DSFVDAVAENLLDRLEDCRKTF 92
             +G     + S R ++IFDR LKRKQ++ AA    P   D   + V   + DR+ D  + F
Sbjct:    31 SGVSPPGSTSPRALNIFDRDLKRKQKNWAARQPEPMRFDYLKEEVGSQIADRVYDITRNF 90

Query:    93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDT--SYDMLKLCKDAQQDAHNDNIETCFVVG 150
               AL +G           GRG I + +  +T   +  + + ++A ++     I T  V+ 
Sbjct:    91 SLALDVGC----------GRGYIAQHLNKETVGKFFQVDIAENALKNTLEMEIPTVSVLA 140

Query:   151 DEEFLPLKE 159
             DEEFLP KE
Sbjct:   141 DEEFLPFKE 149

GO:0032981 "mitochondrial respiratory chain complex I assembly" evidence=IEA

GO:0031314 "extrinsic to mitochondrial inner membrane" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG2940	325	consensus Predicted methyltransferase [General fun	99.9
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	99.81
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	99.77
PRK10258	251	biotin biosynthesis protein BioC; Provisional	99.73
PRK05785	226	hypothetical protein; Provisional	99.69
PLN02233	261	ubiquinone biosynthesis methyltransferase	99.64
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	99.6
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	99.55
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	99.54
PF08241	95	Methyltransf_11: Methyltransferase domain; InterPr	99.53
KOG1540	296	consensus Ubiquinone biosynthesis methyltransferas	99.49
PF13847	152	Methyltransf_31: Methyltransferase domain; PDB: 3T	99.47
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	99.46
PF13649	101	Methyltransf_25: Methyltransferase domain; PDB: 3B	99.44
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	99.43
COG4106	257	Tam Trans-aconitate methyltransferase [General fun	99.42
PF12847	112	Methyltransf_18: Methyltransferase domain; PDB: 3G	99.41
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	99.41
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	99.4
PLN02244	340	tocopherol O-methyltransferase	99.38
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	99.37
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	99.35
PRK06202	232	hypothetical protein; Provisional	99.33
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	99.33
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	99.31
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	99.3
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	99.28
PLN02490	340	MPBQ/MSBQ methyltransferase	99.27
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	99.26
PRK11207	197	tellurite resistance protein TehB; Provisional	99.26
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	99.25
TIGR00740	239	methyltransferase, putative. A simple BLAST search	99.25
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	99.23
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	99.22
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	99.21
PRK06922	677	hypothetical protein; Provisional	99.21
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	99.21
PLN02336	475	phosphoethanolamine N-methyltransferase	99.21
COG4976	287	Predicted methyltransferase (contains TPR repeat)	99.2
PRK08317	241	hypothetical protein; Provisional	99.19
PLN02585	315	magnesium protoporphyrin IX methyltransferase	99.19
smart00650	169	rADc Ribosomal RNA adenine dimethylases.	99.19
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	99.19
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	99.18
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	99.18
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	99.17
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	99.16
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	99.16
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	99.15
PRK12335	287	tellurite resistance protein TehB; Provisional	99.15
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.13
PF08242	99	Methyltransf_12: Methyltransferase domain; InterPr	99.13
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	99.13
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	99.12
TIGR02081	194	metW methionine biosynthesis protein MetW. This pr	99.12
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	99.12
PF05401	201	NodS: Nodulation protein S (NodS); InterPro: IPR00	99.11
TIGR00091	194	tRNA (guanine-N(7)-)-methyltransferase. In E. coli	99.1
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	99.1
TIGR00537	179	hemK_rel_arch HemK-related putative methylase. The	99.08
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	99.07
smart00138	264	MeTrc Methyltransferase, chemotaxis proteins. Meth	99.06
PLN02336	475	phosphoethanolamine N-methyltransferase	99.05
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	99.05
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	99.04
TIGR00452	314	methyltransferase, putative. Known examples to dat	99.03
smart00828	224	PKS_MT Methyltransferase in polyketide synthase (P	99.01
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	99.01
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	99.0
PF07021	193	MetW: Methionine biosynthesis protein MetW; InterP	99.0
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	98.99
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	98.98
PRK14967	223	putative methyltransferase; Provisional	98.96
PHA03411	279	putative methyltransferase; Provisional	98.96
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	98.96
TIGR03438	301	probable methyltransferase. This model represents	98.95
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	98.95
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	98.95
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	98.94
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	98.94
PRK10901	427	16S rRNA methyltransferase B; Provisional	98.94
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	98.93
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	98.93
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	98.93
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	98.93
KOG3010	261	consensus Methyltransferase [General function pred	98.92
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	98.92
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	98.92
KOG4300	252	consensus Predicted methyltransferase [General fun	98.92
PHA03412	241	putative methyltransferase; Provisional	98.91
PRK04266	226	fibrillarin; Provisional	98.91
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	98.91
PRK14968	188	putative methyltransferase; Provisional	98.89
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	98.88
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	98.87
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	98.85
COG2890	280	HemK Methylase of polypeptide chain release factor	98.84
KOG1271	227	consensus Methyltransferases [General function pre	98.84
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	98.84
COG4123	248	Predicted O-methyltransferase [General function pr	98.83
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	98.83
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	98.82
PRK07402	196	precorrin-6B methylase; Provisional	98.82
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	98.81
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	98.8
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	98.8
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	98.79
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	98.77
PLN03075	296	nicotianamine synthase; Provisional	98.76
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	98.76
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	98.76
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	98.74
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	98.73
cd02440	107	AdoMet_MTases S-adenosylmethionine-dependent methy	98.72
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	98.72
PRK14901	434	16S rRNA methyltransferase B; Provisional	98.71
PRK00811	283	spermidine synthase; Provisional	98.7
TIGR00438	188	rrmJ cell division protein FtsJ.	98.69
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	98.69
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	98.69
PTZ00146	293	fibrillarin; Provisional	98.69
PRK14903	431	16S rRNA methyltransferase B; Provisional	98.69
PRK04457	262	spermidine synthase; Provisional	98.68
PRK14902	444	16S rRNA methyltransferase B; Provisional	98.68
PRK13255	218	thiopurine S-methyltransferase; Reviewed	98.65
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	98.65
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	98.65
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	98.64
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	98.63
PRK14904	445	16S rRNA methyltransferase B; Provisional	98.62
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	98.61
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	98.61
PLN02672	1082	methionine S-methyltransferase	98.59
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	98.58
PRK01581	374	speE spermidine synthase; Validated	98.56
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	98.55
PRK04148	134	hypothetical protein; Provisional	98.54
PRK03612	521	spermidine synthase; Provisional	98.47
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	98.47
PLN02366	308	spermidine synthase	98.43
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	98.4
KOG2904	328	consensus Predicted methyltransferase [General fun	98.39
PRK13256	226	thiopurine S-methyltransferase; Reviewed	98.37
PF01170	179	UPF0020: Putative RNA methylase family UPF0020; In	98.37
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	98.36
TIGR00417	270	speE spermidine synthase. the SpeE subunit of sper	98.36
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	98.35
PF02390	195	Methyltransf_4: Putative methyltransferase ; Inter	98.35
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	98.33
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	98.32
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	98.3
COG0030	259	KsgA Dimethyladenosine transferase (rRNA methylati	98.28
PF03291	331	Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971	98.27
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	98.27
PRK00050	296	16S rRNA m(4)C1402 methyltranserfase; Provisional	98.21
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	98.2
KOG0820	315	consensus Ribosomal RNA adenine dimethylase [RNA p	98.17
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	98.12
PF05724	218	TPMT: Thiopurine S-methyltransferase (TPMT); Inter	98.11
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	98.03
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	98.03
KOG2899	288	consensus Predicted methyltransferase [General fun	98.01
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	98.01
COG0220	227	Predicted S-adenosylmethionine-dependent methyltra	97.98
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	97.95
PF00891	241	Methyltransf_2: O-methyltransferase; InterPro: IPR	97.93
COG2265	432	TrmA SAM-dependent methyltransferases related to t	97.93
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	97.93
PLN02823	336	spermine synthase	97.91
PF05148	219	Methyltransf_8: Hypothetical methyltransferase; In	97.9
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	97.88
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	97.87
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	97.85
PRK04338	382	N(2),N(2)-dimethylguanosine tRNA methyltransferase	97.85
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	97.84
KOG1975	389	consensus mRNA cap methyltransferase [RNA processi	97.83
PF13679	141	Methyltransf_32: Methyltransferase domain	97.82
PLN02476	278	O-methyltransferase	97.81
COG4122	219	Predicted O-methyltransferase [General function pr	97.8
COG0500	257	SmtA SAM-dependent methyltransferases [Secondary m	97.77
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	97.74
KOG2361	264	consensus Predicted methyltransferase [General fun	97.73
PF02475	200	Met_10: Met-10+ like-protein; InterPro: IPR003402	97.64
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	97.63
PF03141	506	Methyltransf_29: Putative S-adenosyl-L-methionine-	97.62
KOG3045	325	consensus Predicted RNA methylase involved in rRNA	97.62
PF02384	311	N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T	97.6
TIGR01444	143	fkbM_fam methyltransferase, FkbM family. Members o	97.59
PRK11760	357	putative 23S rRNA C2498 ribose 2'-O-ribose methylt	97.59
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	97.57
PF05891	218	Methyltransf_PK: AdoMet dependent proline di-methy	97.56
PLN02589	247	caffeoyl-CoA O-methyltransferase	97.53
KOG1661	237	consensus Protein-L-isoaspartate(D-aspartate) O-me	97.52
TIGR02987	524	met_A_Alw26 type II restriction m6 adenine DNA met	97.5
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	97.5
TIGR03439	319	methyl_EasF probable methyltransferase domain, Eas	97.49
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	97.49
PF08704	247	GCD14: tRNA methyltransferase complex GCD14 subuni	97.48
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	97.43
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	97.41
COG0116	381	Predicted N6-adenine-specific DNA methylase [DNA r	97.4
COG0421	282	SpeE Spermidine synthase [Amino acid transport and	97.35
PRK11933	470	yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF;	97.35
PF01564	246	Spermine_synth: Spermine/spermidine synthase; Inte	97.34
COG1041	347	Predicted DNA modification methylase [DNA replicat	97.29
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	97.28
PF04816	205	DUF633: Family of unknown function (DUF633) ; Inte	97.23
KOG2187	534	consensus tRNA uracil-5-methyltransferase and rela	97.21
PF01739	196	CheR: CheR methyltransferase, SAM binding domain;	97.17
PF07091	251	FmrO: Ribosomal RNA methyltransferase (FmrO); PDB:	97.14
PRK00536	262	speE spermidine synthase; Provisional	97.11
COG4076	252	Predicted RNA methylase [General function predicti	97.09
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	97.07
KOG1331	293	consensus Predicted methyltransferase [General fun	97.03
PF01728	181	FtsJ: FtsJ-like methyltransferase; InterPro: IPR00	96.87
PRK10611	287	chemotaxis methyltransferase CheR; Provisional	96.85
PF08123	205	DOT1: Histone methylation protein DOT1 ; InterPro:	96.85
COG0293	205	FtsJ 23S rRNA methylase [Translation, ribosomal st	96.58
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	96.44
TIGR00006	305	S-adenosyl-methyltransferase MraW. Genetics paper	96.39
KOG2352	482	consensus Predicted spermine/spermidine synthase [	96.36
COG4262	508	Predicted spermidine synthase with an N-terminal m	96.25
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	96.25
TIGR00308	374	TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi	96.23
PF12147	311	Methyltransf_20: Putative methyltransferase; Inter	96.19
PF02636	252	Methyltransf_28: Putative S-adenosyl-L-methionine-	96.16
COG2521	287	Predicted archaeal methyltransferase [General func	96.15
KOG3987	288	consensus Uncharacterized conserved protein DREV/C	96.14
COG2520	341	Predicted methyltransferase [General function pred	96.11
PF03059	276	NAS: Nicotianamine synthase protein; InterPro: IPR	95.93
PF05971	299	Methyltransf_10: Protein of unknown function (DUF8	95.88
COG2384	226	Predicted SAM-dependent methyltransferase [General	95.82
COG3897	218	Predicted methyltransferase [General function pred	95.6
COG0144	355	Sun tRNA and rRNA cytosine-C5-methylases [Translat	95.59
KOG2730	263	consensus Methylase [General function prediction o	95.54
COG0742	187	N6-adenine-specific methylase [DNA replication, re	95.43
PF01189	283	Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR	95.36
KOG4589	232	consensus Cell division protein FtsJ [Cell cycle c	95.25
KOG2915	314	consensus tRNA(1-methyladenosine) methyltransferas	95.22
PF07757	112	AdoMet_MTase: Predicted AdoMet-dependent methyltra	95.16
KOG1269	364	consensus SAM-dependent methyltransferases [Lipid	95.16
PF01269	229	Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr	95.03
PF11599	246	AviRa: RRNA methyltransferase AviRa; InterPro: IPR	94.69
COG1352	268	CheR Methylase of chemotaxis methyl-accepting prot	94.64
KOG1663	237	consensus O-methyltransferase [Secondary metabolit	94.61
COG1565	370	Uncharacterized conserved protein [Function unknow	94.34
cd00315	275	Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth	94.26
PF01795	310	Methyltransf_5: MraW methylase family; InterPro: I	93.93
COG1189	245	Predicted rRNA methylase [Translation, ribosomal s	93.88
KOG3115	249	consensus Methyltransferase-like protein [General	93.64
COG1889	231	NOP1 Fibrillarin-like rRNA methylase [Translation,	93.21
PLN02232	160	ubiquinone biosynthesis methyltransferase	93.02
PF01555	231	N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th	92.97
PRK10742	250	putative methyltransferase; Provisional	92.94
COG3129	292	Predicted SAM-dependent methyltransferase [General	92.73
KOG1501	636	consensus Arginine N-methyltransferase [General fu	91.62
KOG2651	476	consensus rRNA adenine N-6-methyltransferase [RNA	90.69
PHA01634	156	hypothetical protein	90.38
PF07942	270	N2227: N2227-like protein; InterPro: IPR012901 Thi	90.33
KOG3178	342	consensus Hydroxyindole-O-methyltransferase and re	90.32
PF01234	256	NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I	89.81
PRK11524	284	putative methyltransferase; Provisional	89.78
PF11968	219	DUF3321: Putative methyltransferase (DUF3321); Int	89.52
COG0286	489	HsdM Type I restriction-modification system methyl	89.51
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	89.19
PLN02668	386	indole-3-acetate carboxyl methyltransferase	88.8
COG0275	314	Predicted S-adenosylmethionine-dependent methyltra	88.65
KOG1122	460	consensus tRNA and rRNA cytosine-C5-methylase (nuc	88.56
PF04445	234	SAM_MT: Putative SAM-dependent methyltransferase;	88.22
PF13578	106	Methyltransf_24: Methyltransferase domain; PDB: 3S	87.98
PRK13699	227	putative methylase; Provisional	87.21
PF05206	259	TRM13: Methyltransferase TRM13; InterPro: IPR00787	87.08
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	85.51
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	85.4
KOG0822	649	consensus Protein kinase inhibitor [Cell cycle con	84.8
PF12692	160	Methyltransf_17: S-adenosyl-L-methionine methyltra	84.58
PF05050	167	Methyltransf_21: Methyltransferase FkbM domain; In	83.22
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	82.24
PF00145	335	DNA_methylase: C-5 cytosine-specific DNA methylase	82.2
KOG1709	271	consensus Guanidinoacetate methyltransferase and r	81.87
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	81.68
KOG1596	317	consensus Fibrillarin and related nucleolar RNA-bi	81.01
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	80.14

>KOG2940 consensus Predicted methyltransferase [General function prediction only]

Probab=99.90  E-value=1.7e-24  Score=174.54  Aligned_cols=138  Identities=51%  Similarity=0.835  Sum_probs=124.6

Q ss_pred             HHHhcCCCccccCCCccccCCCccccCCCCCccccccHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHHHHhcccCCCe
Q 030823           16 RRRANNEPYALVPSGSFCTDNGFETTSNGSSRVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAENLLDRLEDCRKTFPT   94 (171)
Q Consensus        16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iFDr~~~~~~r~ra~~~~~~-~~~l~~~va~~l~~rL~~i~~~~~~   94 (171)
                      -+.+||..++.+.+.+|+|+          +...+|||.+|+.||+|++|.+++ .+|++++++.+++||+.++++.|+.
T Consensus         6 ~~~st~~~~~~l~sls~~t~----------s~~~iFDR~~KR~qrdrAa~~~d~k~dylkeeig~rlaDrvfD~kk~fp~   75 (325)
T KOG2940|consen    6 PEKSTKQAHTFLASLSFSTE----------SKVKIFDRDLKRIQRDRAAWLSDQKNDYLKEEIGDRLADRVFDCKKSFPT   75 (325)
T ss_pred             chhhHHHHHHHHHHhhccch----------hhhHhhhhHHHHHHHhHHhhcchhhhhHHHHHHHHHHHHHHHHHhhhCcc
Confidence            46678889999999999886          557899999999999999998666 7999999999999999999999999


Q ss_pred             EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        95 vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++|||||-|.+.++|... .+++++.+|.|..|++.++..    ..+++.+.+.++|+|.|||++++||||+++
T Consensus        76 a~diGcs~G~v~rhl~~e-~vekli~~DtS~~M~~s~~~~----qdp~i~~~~~v~DEE~Ldf~ens~DLiisS  144 (325)
T KOG2940|consen   76 AFDIGCSLGAVKRHLRGE-GVEKLIMMDTSYDMIKSCRDA----QDPSIETSYFVGDEEFLDFKENSVDLIISS  144 (325)
T ss_pred             eeecccchhhhhHHHHhc-chhheeeeecchHHHHHhhcc----CCCceEEEEEecchhcccccccchhhhhhh
Confidence            999999999999999875 489999999999999999753    246778889999999999999999999875

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=99.81  E-value=8.7e-20  Score=148.79  Aligned_cols=116  Identities=19%  Similarity=0.174  Sum_probs=99.7

Q ss_pred             CCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823           45 SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (171)
Q Consensus        45 ~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S  124 (171)
                      ..+..+||+.++.|++.+.+.+.+.+..|+++..+.+..      .+..+|||+|||||.++..+++..+.++|+++|+|
T Consensus        11 ~~v~~vF~~ia~~YD~~n~~~S~g~~~~Wr~~~i~~~~~------~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s   84 (238)
T COG2226          11 EKVQKVFDKVAKKYDLMNDLMSFGLHRLWRRALISLLGI------KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDIS   84 (238)
T ss_pred             HHHHHHHHhhHHHHHhhcccccCcchHHHHHHHHHhhCC------CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECC
Confidence            457889999999999988777899999999988877632      26799999999999999999986667899999999


Q ss_pred             HHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823          125 YDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       125 ~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +.||+.++++..   ..+. ++.|+++|+|.|||+|++||+|+++.
T Consensus        85 ~~ML~~a~~k~~---~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f  127 (238)
T COG2226          85 ESMLEVAREKLK---KKGVQNVEFVVGDAENLPFPDNSFDAVTISF  127 (238)
T ss_pred             HHHHHHHHHHhh---ccCccceEEEEechhhCCCCCCccCEEEeee
Confidence            999999998653   2232 38899999999999999999999864

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=99.77  E-value=1.4e-18  Score=141.43  Aligned_cols=117  Identities=21%  Similarity=0.155  Sum_probs=59.3

Q ss_pred             CCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeC
Q 030823           45 SSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDT  123 (171)
Q Consensus        45 ~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~  123 (171)
                      ..+..+||+.+..|++-+.+.+.+.+..|++.+.+.+.      ..+..+|||+|||||.++..+.+. ++.++|+++|+
T Consensus         7 ~~v~~~Fd~ia~~YD~~n~~ls~g~~~~wr~~~~~~~~------~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~   80 (233)
T PF01209_consen    7 QYVRKMFDRIAPRYDRMNDLLSFGQDRRWRRKLIKLLG------LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDI   80 (233)
T ss_dssp             ------------------------------SHHHHHHT--------S--EEEEET-TTSHHHHHHGGGSS---EEEEEES
T ss_pred             HHHHHHHHHHHHHhCCCccccCCcHHHHHHHHHHhccC------CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecC
Confidence            35788999999999988777778889999987766532      245689999999999999999865 35679999999


Q ss_pred             CHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          124 SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       124 S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      |++||+.|+++...  ....++.++++|++.+||++++||+|++..
T Consensus        81 s~~ML~~a~~k~~~--~~~~~i~~v~~da~~lp~~d~sfD~v~~~f  124 (233)
T PF01209_consen   81 SPGMLEVARKKLKR--EGLQNIEFVQGDAEDLPFPDNSFDAVTCSF  124 (233)
T ss_dssp             -HHHHHHHHHHHHH--TT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred             CHHHHHHHHHHHHh--hCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence            99999999886531  112378999999999999999999999864

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=99.73  E-value=3.3e-17  Score=133.42  Aligned_cols=109  Identities=21%  Similarity=0.203  Sum_probs=93.9

Q ss_pred             cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHH
Q 030823           50 IFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLK  129 (171)
Q Consensus        50 iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~  129 (171)
                      ..|++.++.++++++..|..++.+++.+++.+++++..  .++.+|||+|||+|.++..|...  ..+|+++|+|++|++
T Consensus         3 ~~~k~~i~~~F~~aa~~Y~~~~~~q~~~a~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~   78 (251)
T PRK10258          3 TVNKQAIAAAFGRAAAHYEQHAELQRQSADALLAMLPQ--RKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLA   78 (251)
T ss_pred             ccCHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhcCc--cCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHH
Confidence            46888999999999988999999999999999888763  35689999999999999999874  479999999999999


Q ss_pred             HHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          130 LCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       130 ~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+++..       ....++++|.+.+|+++++||+|+++.
T Consensus        79 ~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~V~s~~  111 (251)
T PRK10258         79 QARQKD-------AADHYLAGDIESLPLATATFDLAWSNL  111 (251)
T ss_pred             HHHhhC-------CCCCEEEcCcccCcCCCCcEEEEEECc
Confidence            997632       234678999999999999999999874

>PRK05785 hypothetical protein; Provisional

Probab=99.69  E-value=1.7e-16  Score=128.48  Aligned_cols=109  Identities=14%  Similarity=0.073  Sum_probs=87.3

Q ss_pred             CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH
Q 030823           46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY  125 (171)
Q Consensus        46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~  125 (171)
                      .+..+||+.+..|++.+...+.+....+.+++...+...+    .+..+|||+|||||.++..|.+.. ..+|+|+|+|+
T Consensus        10 ~v~~~f~~iA~~YD~~n~~~s~g~~~~wr~~~~~~l~~~~----~~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~   84 (226)
T PRK05785         10 ELQEAYNKIPKAYDRANRFISFNQDVRWRAELVKTILKYC----GRPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAE   84 (226)
T ss_pred             HHHHHHHhhhHHHHHhhhhccCCCcHHHHHHHHHHHHHhc----CCCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCH
Confidence            4678999999999986655556667777777666554321    235799999999999999998754 36999999999


Q ss_pred             HHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       126 ~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +|++.|+++          ..++++|.+.+||++++||+|+++.
T Consensus        85 ~Ml~~a~~~----------~~~~~~d~~~lp~~d~sfD~v~~~~  118 (226)
T PRK05785         85 NMLKMNLVA----------DDKVVGSFEALPFRDKSFDVVMSSF  118 (226)
T ss_pred             HHHHHHHhc----------cceEEechhhCCCCCCCEEEEEecC
Confidence            999999752          2357899999999999999999874

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=99.64  E-value=2.2e-15  Score=124.22  Aligned_cols=118  Identities=15%  Similarity=0.077  Sum_probs=83.7

Q ss_pred             CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCC
Q 030823           46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTS  124 (171)
Q Consensus        46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S  124 (171)
                      .+..+||+.++.|++.+.....+.+..+...+.+.     ..+ .+..+|||+|||||.++..+.+.. +.++|+|+|+|
T Consensus        34 ~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~-----~~~-~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S  107 (261)
T PLN02233         34 ERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSW-----SGA-KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFS  107 (261)
T ss_pred             HHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHH-----hCC-CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECC
Confidence            35678999888888654333334455554433222     122 356899999999999999887653 45699999999


Q ss_pred             HHHHHHHHHhhhhh-ccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          125 YDMLKLCKDAQQDA-HNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       125 ~~mL~~a~~~~~~~-~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++|++.|+++.... .....++.++++|++.+|+++++||+|+++.
T Consensus       108 ~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~~~  153 (261)
T PLN02233        108 SEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITMGY  153 (261)
T ss_pred             HHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEEec
Confidence            99999997642100 0012357889999999999999999999864

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=99.60  E-value=1.9e-14  Score=119.01  Aligned_cols=112  Identities=19%  Similarity=0.148  Sum_probs=87.2

Q ss_pred             CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC---CcEEEEEe
Q 030823           46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG---IEKLIMMD  122 (171)
Q Consensus        46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~---~~~v~gvD  122 (171)
                      +.....++.+...++  +.+..+.|.++.+.+++.+.+.+   .....+|||+|||+|.++..|.+..+   ...++|+|
T Consensus        45 ~~~~~d~~~~~~ar~--~fl~~g~y~~l~~~i~~~l~~~l---~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD  119 (272)
T PRK11088         45 SKDPGDNKEMMQARR--AFLDAGHYQPLRDAVANLLAERL---DEKATALLDIGCGEGYYTHALADALPEITTMQLFGLD  119 (272)
T ss_pred             CCCCCcCHHHHHHHH--HHHHCCChHHHHHHHHHHHHHhc---CCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEEC
Confidence            345567888876654  34456778999998888776544   23557899999999999999876432   23799999


Q ss_pred             CCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          123 TSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       123 ~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +|++|+..|++.       ..++.|+++|.+.+||++++||+|+++.
T Consensus       120 ~s~~~l~~A~~~-------~~~~~~~~~d~~~lp~~~~sfD~I~~~~  159 (272)
T PRK11088        120 ISKVAIKYAAKR-------YPQVTFCVASSHRLPFADQSLDAIIRIY  159 (272)
T ss_pred             CCHHHHHHHHHh-------CCCCeEEEeecccCCCcCCceeEEEEec
Confidence            999999999752       2357789999999999999999999863

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=99.55  E-value=3.3e-14  Score=113.22  Aligned_cols=103  Identities=23%  Similarity=0.193  Sum_probs=82.9

Q ss_pred             HHHHhCCCChHHHHHHHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc
Q 030823           62 RAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN  140 (171)
Q Consensus        62 ra~~~~~~~~~l~~~va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~  140 (171)
                      +++..|..+..++..++..+++.+.... ....+|||+|||+|.++..+.+.++..+++++|+|++|++.+++..     
T Consensus         4 ~~~~~y~~~~~~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~-----   78 (240)
T TIGR02072         4 KAAKTYDRHAKIQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL-----   78 (240)
T ss_pred             hhhhchhHHHHHHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc-----
Confidence            3444455667788888898888877543 3447899999999999999988777678999999999999987632     


Q ss_pred             CCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823          141 DNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       141 ~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      . .++.++.+|.+.+|+++++||+|+++.+
T Consensus        79 ~-~~~~~~~~d~~~~~~~~~~fD~vi~~~~  107 (240)
T TIGR02072        79 S-ENVQFICGDAEKLPLEDSSFDLIVSNLA  107 (240)
T ss_pred             C-CCCeEEecchhhCCCCCCceeEEEEhhh
Confidence            1 2567899999999999999999998753

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=99.54  E-value=1e-13  Score=111.25  Aligned_cols=115  Identities=13%  Similarity=0.092  Sum_probs=85.6

Q ss_pred             CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCC
Q 030823           46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTS  124 (171)
Q Consensus        46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S  124 (171)
                      .+..+||+.+..+++.......+.+..+.+++...+    .  ..+..+|||+|||+|.++..+.+.. +..+|+|+|+|
T Consensus         6 ~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l----~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s   79 (231)
T TIGR02752         6 RVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRM----N--VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFS   79 (231)
T ss_pred             HHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhc----C--CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECC
Confidence            356789999988887544444555666554444332    1  2345799999999999999998653 45799999999


Q ss_pred             HHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEec
Q 030823          125 YDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       125 ~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++|++.+++...   ..+ .++.++++|.+.+|+++++||+|+++.
T Consensus        80 ~~~~~~a~~~~~---~~~~~~v~~~~~d~~~~~~~~~~fD~V~~~~  122 (231)
T TIGR02752        80 ENMLSVGRQKVK---DAGLHNVELVHGNAMELPFDDNSFDYVTIGF  122 (231)
T ss_pred             HHHHHHHHHHHH---hcCCCceEEEEechhcCCCCCCCccEEEEec
Confidence            999999987542   122 257889999999999999999999853

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.53  E-value=6.2e-14  Score=96.10  Aligned_cols=69  Identities=25%  Similarity=0.273  Sum_probs=56.3

Q ss_pred             EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        96 LDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ||+|||+|..+..|.+. +..+|+++|+|++|++.+++..     ....+.++++|.+.+||++++||+|+++.+
T Consensus         1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~-----~~~~~~~~~~d~~~l~~~~~sfD~v~~~~~   69 (95)
T PF08241_consen    1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRL-----KNEGVSFRQGDAEDLPFPDNSFDVVFSNSV   69 (95)
T ss_dssp             EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHT-----TTSTEEEEESBTTSSSS-TT-EEEEEEESH
T ss_pred             CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcc-----cccCchheeehHHhCccccccccccccccc
Confidence            89999999999999986 5689999999999999998753     333455899999999999999999999763

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....

>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]

Probab=99.49  E-value=3.2e-13  Score=110.67  Aligned_cols=115  Identities=16%  Similarity=0.139  Sum_probs=83.9

Q ss_pred             cccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC------CcEEEEE
Q 030823           48 VSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------IEKLIMM  121 (171)
Q Consensus        48 ~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~------~~~v~gv  121 (171)
                      ..+|.+.++.|+--+-+-+.+.|.-|++.....    |.  ....+++||++||||.++..+.+.-+      ..+|+.+
T Consensus        63 ~~vF~~vA~~YD~mND~mSlGiHRlWKd~~v~~----L~--p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~  136 (296)
T KOG1540|consen   63 HHVFESVAKKYDIMNDAMSLGIHRLWKDMFVSK----LG--PGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVL  136 (296)
T ss_pred             HHHHHHHHHHHHHHHHHhhcchhHHHHHHhhhc----cC--CCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEE
Confidence            456777777776554455567777776554443    33  23458999999999999988875332      2799999


Q ss_pred             eCCHHHHHHHHHhhhh-hccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823          122 DTSYDMLKLCKDAQQD-AHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       122 D~S~~mL~~a~~~~~~-~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      |++++||+.++++... .......+.|+++|+|.|||++++||..++.
T Consensus       137 Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D~yTia  184 (296)
T KOG1540|consen  137 DINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFDAYTIA  184 (296)
T ss_pred             eCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcceeEEEe
Confidence            9999999999875421 0011223789999999999999999999875

>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A

Probab=99.47  E-value=5.2e-13  Score=100.98  Aligned_cols=76  Identities=22%  Similarity=0.192  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHh-hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~-~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      +..+|||+|||+|.++..|. ..++..+++|+|+|++|++.+++...   ..+. ++.|+++|.+.++  ++ +.||+|+
T Consensus         3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~---~~~~~ni~~~~~d~~~l~~~~~-~~~D~I~   78 (152)
T PF13847_consen    3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAK---ELGLDNIEFIQGDIEDLPQELE-EKFDIII   78 (152)
T ss_dssp             TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHH---HTTSTTEEEEESBTTCGCGCSS-TTEEEEE
T ss_pred             CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccc---cccccccceEEeehhccccccC-CCeeEEE
Confidence            45789999999999999999 44567899999999999999987542   2333 6899999999988  76 9999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      +..+
T Consensus        79 ~~~~   82 (152)
T PF13847_consen   79 SNGV   82 (152)
T ss_dssp             EEST
T ss_pred             EcCc
Confidence            9853

...

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=99.46  E-value=6.1e-13  Score=106.21  Aligned_cols=72  Identities=11%  Similarity=0.085  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||+|||+|.++..|.+..+..+++|+|+|++|++.|++..       .++.++++|... |+++++||+|+++.+
T Consensus        43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-------~~~~~~~~d~~~-~~~~~sfD~V~~~~v  114 (204)
T TIGR03587        43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-------PNINIIQGSLFD-PFKDNFFDLVLTKGV  114 (204)
T ss_pred             CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-------CCCcEEEeeccC-CCCCCCEEEEEECCh
Confidence            457899999999999999987545579999999999999997621       235667889887 999999999999764

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A

Probab=99.44  E-value=1.9e-13  Score=96.60  Aligned_cols=72  Identities=28%  Similarity=0.259  Sum_probs=57.7

Q ss_pred             EEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           95 ALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        95 vLDlGcGtG~l~~~L~~~~---~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      |||+|||+|..+..+.+..   +..+++++|+|++||+.+++...   ..+.++.|+++|...+|+.+++||+|+++.
T Consensus         1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~---~~~~~~~~~~~D~~~l~~~~~~~D~v~~~~   75 (101)
T PF13649_consen    1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS---EDGPKVRFVQADARDLPFSDGKFDLVVCSG   75 (101)
T ss_dssp             -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH---HTTTTSEEEESCTTCHHHHSSSEEEEEE-T
T ss_pred             CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch---hcCCceEEEECCHhHCcccCCCeeEEEEcC
Confidence            7999999999999998753   33799999999999999987542   245578899999999999999999999953

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=99.43  E-value=3.8e-13  Score=110.04  Aligned_cols=81  Identities=17%  Similarity=0.081  Sum_probs=64.5

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf  157 (171)
                      ...+++.+.  ..+..+|||||||+|.++..|.+..+..+|+|+|+|+.|++.+++       .  ++.++++|.+.++ 
T Consensus        18 ~~~ll~~l~--~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~-------~--~~~~~~~d~~~~~-   85 (255)
T PRK14103         18 FYDLLARVG--AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE-------R--GVDARTGDVRDWK-   85 (255)
T ss_pred             HHHHHHhCC--CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------c--CCcEEEcChhhCC-
Confidence            344544443  235589999999999999999886666799999999999999975       2  3667899998886 


Q ss_pred             CCCccceEEEecc
Q 030823          158 KERYACRFFVLAL  170 (171)
Q Consensus       158 ~~~sfDlV~s~~~  170 (171)
                      ++++||+|+++.+
T Consensus        86 ~~~~fD~v~~~~~   98 (255)
T PRK14103         86 PKPDTDVVVSNAA   98 (255)
T ss_pred             CCCCceEEEEehh
Confidence            5789999999863

>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]

Probab=99.42  E-value=1.3e-13  Score=110.63  Aligned_cols=85  Identities=21%  Similarity=0.131  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L  155 (171)
                      +-+.+|..++.  ......|.|+|||+|+.+..|.++.+...|+|+|.|++||+.|++       ..+++.|..+|...+
T Consensus        17 RPa~dLla~Vp--~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-------rlp~~~f~~aDl~~w   87 (257)
T COG4106          17 RPARDLLARVP--LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-------RLPDATFEEADLRTW   87 (257)
T ss_pred             CcHHHHHhhCC--ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH-------hCCCCceecccHhhc
Confidence            33455554443  235578999999999999999999999999999999999999976       456788999999988


Q ss_pred             CCCCCccceEEEecc
Q 030823          156 PLKERYACRFFVLAL  170 (171)
Q Consensus       156 Pf~~~sfDlV~s~~~  170 (171)
                      - ++..+|++++||+
T Consensus        88 ~-p~~~~dllfaNAv  101 (257)
T COG4106          88 K-PEQPTDLLFANAV  101 (257)
T ss_pred             C-CCCccchhhhhhh
Confidence            7 5789999999985

>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A

Probab=99.41  E-value=1.1e-12  Score=93.34  Aligned_cols=77  Identities=16%  Similarity=0.041  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC-CCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~-e~LPf~~~sfDlV~s~~  169 (171)
                      |..+|||||||+|.++..+.+..+..+|+++|+|++|++.+++.... .....++.++++|. ....+ .+.||+|++..
T Consensus         1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~i~~~~~d~~~~~~~-~~~~D~v~~~~   78 (112)
T PF12847_consen    1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE-EGLSDRITFVQGDAEFDPDF-LEPFDLVICSG   78 (112)
T ss_dssp             TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH-TTTTTTEEEEESCCHGGTTT-SSCEEEEEECS
T ss_pred             CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECccccCccc-CCCCCEEEECC
Confidence            35789999999999999998855668999999999999999876521 12345788999999 44443 45699999976

...

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=99.41  E-value=6.6e-13  Score=106.92  Aligned_cols=90  Identities=20%  Similarity=0.166  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~  150 (171)
                      -.++.+++++-++.|+.-.....-|||||||||..+..|...+  ..++|+|+|+.||+.|.+       ..++..++.+
T Consensus        30 ~~IQ~em~eRaLELLalp~~~~~~iLDIGCGsGLSg~vL~~~G--h~wiGvDiSpsML~~a~~-------~e~egdlil~  100 (270)
T KOG1541|consen   30 VLIQAEMAERALELLALPGPKSGLILDIGCGSGLSGSVLSDSG--HQWIGVDISPSMLEQAVE-------RELEGDLILC  100 (270)
T ss_pred             eeehHHHHHHHHHHhhCCCCCCcEEEEeccCCCcchheeccCC--ceEEeecCCHHHHHHHHH-------hhhhcCeeee
Confidence            4566677777666655333335679999999999999998743  789999999999999975       2334556777


Q ss_pred             cC-CCCCCCCCccceEEEec
Q 030823          151 DE-EFLPLKERYACRFFVLA  169 (171)
Q Consensus       151 D~-e~LPf~~~sfDlV~s~~  169 (171)
                      |+ +-+||++++||-|+|.+
T Consensus       101 DMG~GlpfrpGtFDg~ISIS  120 (270)
T KOG1541|consen  101 DMGEGLPFRPGTFDGVISIS  120 (270)
T ss_pred             ecCCCCCCCCCccceEEEee
Confidence            75 78999999999999864

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=99.40  E-value=3.1e-12  Score=104.74  Aligned_cols=113  Identities=17%  Similarity=0.122  Sum_probs=78.2

Q ss_pred             ccccHHHHHHHHHHHHHhCCCC-hHHHHHHH-HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHH
Q 030823           49 SIFDRHLKRKQRDRAAWLTRPN-DSFVDAVA-ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD  126 (171)
Q Consensus        49 ~iFDr~~~~~~r~ra~~~~~~~-~~l~~~va-~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~  126 (171)
                      ..||..+.++.+.  +  |+.. -.+...+. ..+.+.+..+..+..+|||+|||+|.++..|++.  ..+|+++|+|++
T Consensus         4 ~~fd~~a~~f~~~--~--y~~~~g~~r~~~~~~~~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~   77 (255)
T PRK11036          4 RNFDDIAEKFSRN--I--YGTTKGQIRQAILWQDLDRLLAELPPRPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAE   77 (255)
T ss_pred             CChhhHHHHHHHh--c--cCCCccHHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHH
Confidence            4688877555432  2  4442 23333322 2233333444455689999999999999999885  379999999999


Q ss_pred             HHHHHHHhhhhhccCC--CceeEEEccCCCCC-CCCCccceEEEecc
Q 030823          127 MLKLCKDAQQDAHNDN--IETCFVVGDEEFLP-LKERYACRFFVLAL  170 (171)
Q Consensus       127 mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LP-f~~~sfDlV~s~~~  170 (171)
                      |++.|++...   ..+  .++.++++|.+.++ +.+++||+|+++.+
T Consensus        78 ~l~~a~~~~~---~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~v  121 (255)
T PRK11036         78 MIQRAKQAAE---AKGVSDNMQFIHCAAQDIAQHLETPVDLILFHAV  121 (255)
T ss_pred             HHHHHHHHHH---hcCCccceEEEEcCHHHHhhhcCCCCCEEEehhH
Confidence            9999987542   222  25778899988774 67899999998753

>PLN02244 tocopherol O-methyltransferase

Probab=99.38  E-value=4.1e-12  Score=108.49  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=63.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..|.+.+ ..+|+|+|+|+.|++.+++...   ..+  .++.|+++|.+.+||++++||+|++
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~---~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s  192 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAA---AQGLSDKVSFQVADALNQPFEDGQFDLVWS  192 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEEcCcccCCCCCCCccEEEE
Confidence            456799999999999999998754 4699999999999999987542   122  2588999999999999999999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       193 ~~  194 (340)
T PLN02244        193 ME  194 (340)
T ss_pred             CC
Confidence            64

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=99.37  E-value=2.4e-12  Score=105.10  Aligned_cols=87  Identities=21%  Similarity=0.122  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e  153 (171)
                      +...+..+++.+.  ..+..+|||||||+|.++..+.+..+..+|+|+|+|+.|++.+++..       .++.++.+|.+
T Consensus        16 ~~~~~~~ll~~~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-------~~~~~~~~d~~   86 (258)
T PRK01683         16 RTRPARDLLARVP--LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-------PDCQFVEADIA   86 (258)
T ss_pred             hhcHHHHHHhhCC--CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-------CCCeEEECchh
Confidence            3345555655443  23568999999999999999987666789999999999999997632       24678889998


Q ss_pred             CCCCCCCccceEEEecc
Q 030823          154 FLPLKERYACRFFVLAL  170 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~~  170 (171)
                      .++ ++++||+|+++..
T Consensus        87 ~~~-~~~~fD~v~~~~~  102 (258)
T PRK01683         87 SWQ-PPQALDLIFANAS  102 (258)
T ss_pred             ccC-CCCCccEEEEccC
Confidence            776 4579999999864

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=99.35  E-value=1.3e-11  Score=97.50  Aligned_cols=76  Identities=13%  Similarity=-0.008  Sum_probs=63.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..++...+..+|+++|+|++|++.+++...   ..+. ++.++.+|.+.++. +++||+|++++
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~---~~~l~~i~~~~~d~~~~~~-~~~fDlV~~~~  120 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAA---ELGLKNVTVVHGRAEEFGQ-EEKFDVVTSRA  120 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH---HcCCCCEEEEeccHhhCCC-CCCccEEEEcc
Confidence            3689999999999999988865567899999999999999987543   2233 48889999999887 78999999975


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      .
T Consensus       121 ~  121 (187)
T PRK00107        121 V  121 (187)
T ss_pred             c
Confidence            3

>PRK06202 hypothetical protein; Provisional

Probab=99.33  E-value=5.7e-12  Score=101.64  Aligned_cols=75  Identities=11%  Similarity=-0.062  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..|.+    .++..+|+|+|+|++|++.+++..     ...++.+.+++.+.+|+++++||+|
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~-----~~~~~~~~~~~~~~l~~~~~~fD~V  133 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP-----RRPGVTFRQAVSDELVAEGERFDVV  133 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc-----ccCCCeEEEEecccccccCCCccEE
Confidence            4557999999999999888864    233459999999999999997642     2234566778888888888999999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +++.
T Consensus       134 ~~~~  137 (232)
T PRK06202        134 TSNH  137 (232)
T ss_pred             EECC
Confidence            9985

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=99.33  E-value=2.3e-11  Score=99.32  Aligned_cols=96  Identities=17%  Similarity=0.153  Sum_probs=68.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhh--cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG--RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE  144 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~--~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~  144 (171)
                      -..|+.++..++..+ .+   ...+..+|||||||+|.++..+.+  ..+..+++++|+|++|++.|+++... .....+
T Consensus        36 ~p~y~~~~~~~~~~~-~~---~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~-~~~~~~  110 (247)
T PRK15451         36 VPGYSNIISMIGMLA-ER---FVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTP  110 (247)
T ss_pred             CCChHHHHHHHHHHH-HH---hCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCC
Confidence            345666665554332 22   224568999999999999988876  23567999999999999999875421 011225


Q ss_pred             eeEEEccCCCCCCCCCccceEEEec
Q 030823          145 TCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       145 ~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +.++++|.+.+|++  .+|+|+++.
T Consensus       111 v~~~~~d~~~~~~~--~~D~vv~~~  133 (247)
T PRK15451        111 VDVIEGDIRDIAIE--NASMVVLNF  133 (247)
T ss_pred             eEEEeCChhhCCCC--CCCEEehhh
Confidence            78899999999875  489998763

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=99.31  E-value=2.9e-11  Score=94.88  Aligned_cols=74  Identities=12%  Similarity=0.020  Sum_probs=60.5

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ..+|||+|||+|.++..++...+..+|+++|+|++|++.+++...   ..+. ++.++.+|.+.++. +++||+|++++
T Consensus        43 ~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~---~~~~~~i~~i~~d~~~~~~-~~~fD~I~s~~  117 (181)
T TIGR00138        43 GKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKA---ELGLNNVEIVNGRAEDFQH-EEQFDVITSRA  117 (181)
T ss_pred             CCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHH---HhCCCCeEEEecchhhccc-cCCccEEEehh
Confidence            579999999999999988765566799999999999998876442   2233 57889999998753 68999999975

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=99.30  E-value=5.2e-11  Score=101.33  Aligned_cols=76  Identities=11%  Similarity=-0.040  Sum_probs=61.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||||||+|.++..|++.  ..+|+|+|+|++|++.|+++... .....++.++++|++.+|+++++||+|++..
T Consensus       131 ~g~~ILDIGCG~G~~s~~La~~--g~~V~GID~s~~~i~~Ar~~~~~-~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~  206 (322)
T PLN02396        131 EGLKFIDIGCGGGLLSEPLARM--GATVTGVDAVDKNVKIARLHADM-DPVTSTIEYLCTTAEKLADEGRKFDAVLSLE  206 (322)
T ss_pred             CCCEEEEeeCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHHh-cCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence            3458999999999999999873  47999999999999999864310 0011257889999999999889999999875

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=99.28  E-value=3.6e-11  Score=96.11  Aligned_cols=71  Identities=17%  Similarity=0.075  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..++..  ..+|+|+|+|++|+..++++..   ..+.  ++.|.++|.+.++   ++||+|+++
T Consensus        55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~---~~~~~~~i~~~~~d~~~~~---~~fD~ii~~  126 (219)
T TIGR02021        55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQ---GRDVAGNVEFEVNDLLSLC---GEFDIVVCM  126 (219)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECChhhCC---CCcCEEEEh
Confidence            4689999999999999999874  3699999999999999987542   1222  5788999998877   799999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       127 ~  127 (219)
T TIGR02021       127 D  127 (219)
T ss_pred             h
Confidence            4

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=99.27  E-value=1.7e-11  Score=104.97  Aligned_cols=75  Identities=20%  Similarity=0.216  Sum_probs=62.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+.+..+..+|+++|+|++|++.++++.     ...++.++.+|.+.+|+++++||+|+++.
T Consensus       112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----~~~~i~~i~gD~e~lp~~~~sFDvVIs~~  186 (340)
T PLN02490        112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----PLKECKIIEGDAEDLPFPTDYADRYVSAG  186 (340)
T ss_pred             CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----hccCCeEEeccHHhCCCCCCceeEEEEcC
Confidence            4567999999999999988876545579999999999999998742     12346779999999999999999999864

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=99.26  E-value=4.1e-11  Score=99.00  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=61.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|..+..|++.. ..+|+++|+|++|++.+++...    ...++.++++|....|+++++||+|++.
T Consensus        51 ~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~----~~~~i~~~~~D~~~~~~~~~~FD~V~s~  124 (263)
T PTZ00098         51 NENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNS----DKNKIEFEANDILKKDFPENTFDMIYSR  124 (263)
T ss_pred             CCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcC----cCCceEEEECCcccCCCCCCCeEEEEEh
Confidence            456899999999999999887643 3599999999999999987431    2235788999999999999999999984

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=99.26  E-value=3.5e-11  Score=95.23  Aligned_cols=73  Identities=12%  Similarity=-0.035  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..|++.  ..+|+++|+|++|++.+++...   ..+. ++.+.++|...+++ +++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~---~~~~~~v~~~~~d~~~~~~-~~~fD~I~~~~  103 (197)
T PRK11207         30 KPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKA---AENLDNLHTAVVDLNNLTF-DGEYDFILSTV  103 (197)
T ss_pred             CCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHH---HcCCCcceEEecChhhCCc-CCCcCEEEEec
Confidence            4579999999999999999985  3699999999999999987542   2233 46778899988887 46799999875

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=99.25  E-value=1.8e-11  Score=97.34  Aligned_cols=76  Identities=12%  Similarity=0.073  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccC-CCCC--CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDE-EFLP--LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~-e~LP--f~~~sfDlV~  166 (171)
                      +..+|||+|||+|.++..+++..+..+|+++|+|++|++.+++...   ..+ .++.++++|+ +.++  +++++||+|+
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~---~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~  116 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIE---EEGLTNLRLLCGDAVEVLLDMFPDGSLDRIY  116 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHH---HcCCCCEEEEecCHHHHHHHHcCccccceEE
Confidence            5689999999999999999876666799999999999999987542   122 3578899999 8887  8889999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       117 ~~~  119 (202)
T PRK00121        117 LNF  119 (202)
T ss_pred             EEC
Confidence            864

>TIGR00740 methyltransferase, putative

Probab=99.25  E-value=8.9e-11  Score=95.07  Aligned_cols=77  Identities=19%  Similarity=0.145  Sum_probs=60.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+.+..  +..+++|+|+|++|++.|++.... .....++.++++|...+|++  .+|+|++
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~-~~~~~~v~~~~~d~~~~~~~--~~d~v~~  128 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRHVEIK--NASMVIL  128 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHh-cCCCCCeEEEECChhhCCCC--CCCEEee
Confidence            356789999999999998887642  467999999999999999875421 01123578899999999985  4898887


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       129 ~~  130 (239)
T TIGR00740       129 NF  130 (239)
T ss_pred             ec
Confidence            64

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=99.23  E-value=8.4e-12  Score=101.51  Aligned_cols=75  Identities=12%  Similarity=0.007  Sum_probs=64.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||+|||.|.++..+++.+  ..|+|+|+|+++++.|+.+.   ...++.+.|.....|.+-...++||+|+|+.+
T Consensus        59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha---~e~gv~i~y~~~~~edl~~~~~~FDvV~cmEV  133 (243)
T COG2227          59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHA---LESGVNIDYRQATVEDLASAGGQFDVVTCMEV  133 (243)
T ss_pred             CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhh---hhccccccchhhhHHHHHhcCCCccEEEEhhH
Confidence            56899999999999999999865  89999999999999998754   24566778888999988877799999999754

>TIGR00477 tehB tellurite resistance protein TehB

Probab=99.22  E-value=5.7e-11  Score=93.90  Aligned_cols=73  Identities=15%  Similarity=-0.009  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..|++++  .+|+++|+|+.|++.+++...   ..++++.+.++|....+++ ++||+|+++.
T Consensus        30 ~~~~vLDiGcG~G~~a~~la~~g--~~V~~iD~s~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~-~~fD~I~~~~  102 (195)
T TIGR00477        30 APCKTLDLGCGQGRNSLYLSLAG--YDVRAWDHNPASIASVLDMKA---RENLPLRTDAYDINAAALN-EDYDFIFSTV  102 (195)
T ss_pred             CCCcEEEeCCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH---HhCCCceeEeccchhcccc-CCCCEEEEec
Confidence            35799999999999999998853  699999999999999876442   2345566778888777764 6899999874

Part of a tellurite-reducing operon tehA and tehB

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=99.21  E-value=3.2e-10  Score=90.38  Aligned_cols=78  Identities=21%  Similarity=0.162  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..+...++ ..+++++|++++|++.+++.... .....++.++.+|.+.+++++++||+|+++.
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~  129 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRD-LGLSGNVEFVQGDAEALPFPDNSFDAVTIAF  129 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcc-cccccCeEEEecccccCCCCCCCccEEEEec
Confidence            457999999999999999987654 57999999999999999875321 0012357788999999998889999998753

>PRK06922 hypothetical protein; Provisional

Probab=99.21  E-value=4.7e-11  Score=109.07  Aligned_cols=76  Identities=13%  Similarity=0.123  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+++..+..+|+|+|+|+.|++.+++...   ..+.++.++++|...+|  |++++||+|+++
T Consensus       418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~---~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn  494 (677)
T PRK06922        418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ---NEGRSWNVIKGDAINLSSSFEKESVDTIVYS  494 (677)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh---hcCCCeEEEEcchHhCccccCCCCEEEEEEc
Confidence            4689999999999999999876677899999999999999986431   23345677889998888  889999999987


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       495 ~  495 (677)
T PRK06922        495 S  495 (677)
T ss_pred             h
Confidence            4

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=99.21  E-value=2e-10  Score=90.69  Aligned_cols=75  Identities=17%  Similarity=0.127  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~-~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..+.+..+. .+++++|+++.+++.+++..    ....++.++.+|...+|++++.||+|+++.
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~----~~~~~i~~~~~d~~~~~~~~~~~D~i~~~~  114 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKS----ELPLNIEFIQADAEALPFEDNSFDAVTIAF  114 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHh----ccCCCceEEecchhcCCCCCCcEEEEEEee
Confidence            5689999999999999999876543 59999999999999997643    112246788999999999889999998864

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.21  E-value=9.2e-11  Score=103.77  Aligned_cols=85  Identities=13%  Similarity=0.107  Sum_probs=66.3

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~  158 (171)
                      +.+++.+.  ..+..+|||||||+|.++..|+... ..+|+|+|+|++|+..|++...   .....+.|+++|...+|++
T Consensus       256 e~l~~~~~--~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~---~~~~~v~~~~~d~~~~~~~  329 (475)
T PLN02336        256 KEFVDKLD--LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAI---GRKCSVEFEVADCTKKTYP  329 (475)
T ss_pred             HHHHHhcC--CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhh---cCCCceEEEEcCcccCCCC
Confidence            44555443  2456799999999999998888744 4589999999999999976421   1223578899999999999


Q ss_pred             CCccceEEEec
Q 030823          159 ERYACRFFVLA  169 (171)
Q Consensus       159 ~~sfDlV~s~~  169 (171)
                      +++||+|+|..
T Consensus       330 ~~~fD~I~s~~  340 (475)
T PLN02336        330 DNSFDVIYSRD  340 (475)
T ss_pred             CCCEEEEEECC
Confidence            99999999964

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=99.20  E-value=1.9e-12  Score=104.91  Aligned_cols=111  Identities=19%  Similarity=0.180  Sum_probs=73.2

Q ss_pred             CCCCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEE
Q 030823           43 NGSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMM  121 (171)
Q Consensus        43 ~~~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gv  121 (171)
                      |+..+..+||..+.+..  ...-  .+-.|-   +-+.+.++|.... .+|.++||+|||||..+..|..  ...+++|+
T Consensus        83 P~aYVe~LFD~~Ae~Fd--~~LV--dkL~Y~---vP~~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~--~a~~ltGv  153 (287)
T COG4976          83 PSAYVETLFDQYAERFD--HILV--DKLGYS---VPELLAEMIGKADLGPFRRMLDLGCGTGLTGEALRD--MADRLTGV  153 (287)
T ss_pred             chHHHHHHHHHHHHHHH--HHHH--HHhcCc---cHHHHHHHHHhccCCccceeeecccCcCcccHhHHH--HHhhccCC
Confidence            33556788999775443  2222  111111   1122223333332 3599999999999999999987  45799999


Q ss_pred             eCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEEec
Q 030823          122 DTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERYACRFFVLA  169 (171)
Q Consensus       122 D~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f~~~sfDlV~s~~  169 (171)
                      |+|++||.+|.+       ++.--...+++.. .++ ..++.||+|++..
T Consensus       154 DiS~nMl~kA~e-------Kg~YD~L~~Aea~~Fl~~~~~er~DLi~AaD  196 (287)
T COG4976         154 DISENMLAKAHE-------KGLYDTLYVAEAVLFLEDLTQERFDLIVAAD  196 (287)
T ss_pred             chhHHHHHHHHh-------ccchHHHHHHHHHHHhhhccCCcccchhhhh
Confidence            999999999986       4443334556655 555 6789999998754

>PRK08317 hypothetical protein; Provisional

Probab=99.19  E-value=2.4e-10  Score=90.67  Aligned_cols=77  Identities=22%  Similarity=0.140  Sum_probs=63.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..+++.. +..+++++|+|+.+++.+++...   ....++.++.+|.+.+|+++++||+|++.
T Consensus        18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~~D~v~~~   94 (241)
T PRK08317         18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA---GLGPNVEFVRGDADGLPFPDGSFDAVRSD   94 (241)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh---CCCCceEEEecccccCCCCCCCceEEEEe
Confidence            355799999999999999998754 55799999999999999986421   12346788999999999999999999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus        95 ~   95 (241)
T PRK08317         95 R   95 (241)
T ss_pred             c
Confidence            4

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=99.19  E-value=2e-10  Score=97.51  Aligned_cols=74  Identities=16%  Similarity=-0.016  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCCCCCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      +..+|||+|||+|.++..|.+.  ..+|+|+|+|++|++.++++.....   ....++.|.++|.+.+   +++||+|++
T Consensus       144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l---~~~fD~Vv~  218 (315)
T PLN02585        144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL---SGKYDTVTC  218 (315)
T ss_pred             CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc---CCCcCEEEE
Confidence            4579999999999999999874  3699999999999999987542100   0123567888887654   589999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       219 ~~  220 (315)
T PLN02585        219 LD  220 (315)
T ss_pred             cC
Confidence            64

>smart00650 rADc Ribosomal RNA adenine dimethylases

Probab=99.19  E-value=1.4e-10  Score=89.46  Aligned_cols=72  Identities=13%  Similarity=0.065  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+.++  ..+|+++|+++.|++.+++...    ...++.++.+|...+++++..||.|+++
T Consensus        13 ~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~----~~~~v~ii~~D~~~~~~~~~~~d~vi~n   84 (169)
T smart00650       13 PGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFA----AADNLTVIHGDALKFDLPKLQPYKVVGN   84 (169)
T ss_pred             CcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhc----cCCCEEEEECchhcCCccccCCCEEEEC
Confidence            4578999999999999999885  4799999999999999986431    1235778999999999888889999987

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=99.19  E-value=1.1e-10  Score=96.17  Aligned_cols=78  Identities=23%  Similarity=0.216  Sum_probs=62.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|..+..+... ++..+|+++|+|++|++.+++...   ..+. ++.++.+|.+.+|+++++||+|++
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~---~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~  152 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANAR---KAGYTNVEFRLGEIEALPVADNSVDVIIS  152 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHH---HcCCCCEEEEEcchhhCCCCCCceeEEEE
Confidence            45689999999999887766543 344689999999999999987432   1222 577899999999999999999998


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       153 ~~v  155 (272)
T PRK11873        153 NCV  155 (272)
T ss_pred             cCc
Confidence            753

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=99.18  E-value=2.6e-10  Score=91.02  Aligned_cols=71  Identities=23%  Similarity=0.218  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..|.+.+  .+|+++|+|++|++.+++...   ..+.  .+.+..+|   ++..+++||+|+++
T Consensus        63 ~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~---~~~~~~~i~~~~~d---~~~~~~~fD~v~~~  134 (230)
T PRK07580         63 TGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAP---EAGLAGNITFEVGD---LESLLGRFDTVVCL  134 (230)
T ss_pred             CCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH---hcCCccCcEEEEcC---chhccCCcCEEEEc
Confidence            45799999999999999998743  579999999999999987542   1222  56778888   44557899999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       135 ~  135 (230)
T PRK07580        135 D  135 (230)
T ss_pred             c
Confidence            4

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=99.18  E-value=9.4e-11  Score=99.62  Aligned_cols=77  Identities=16%  Similarity=0.081  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+++.+ ...|+|+|+|+.|+.+++..... .....++.++.+|.+.+|+ +++||+|+|+.+
T Consensus       122 ~g~~VLDIGCG~G~~~~~la~~g-~~~V~GiD~S~~~l~q~~a~~~~-~~~~~~i~~~~~d~e~lp~-~~~FD~V~s~~v  198 (322)
T PRK15068        122 KGRTVLDVGCGNGYHMWRMLGAG-AKLVVGIDPSQLFLCQFEAVRKL-LGNDQRAHLLPLGIEQLPA-LKAFDTVFSMGV  198 (322)
T ss_pred             CCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHh-cCCCCCeEEEeCCHHHCCC-cCCcCEEEECCh
Confidence            45799999999999999998764 34799999999999876432211 0123468889999999999 899999999753

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=99.17  E-value=5.1e-10  Score=86.60  Aligned_cols=84  Identities=24%  Similarity=0.167  Sum_probs=62.9

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEEccCCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEFLPL  157 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-~~~~~~D~e~LPf  157 (171)
                      ..|++.+...  +..+|||+|||+|.++..+++..+..+|+++|+++.+++.+++...   ..+.+ +.++..|.-. ++
T Consensus        21 ~lL~~~l~~~--~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~---~n~~~~v~~~~~d~~~-~~   94 (170)
T PF05175_consen   21 RLLLDNLPKH--KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAE---RNGLENVEVVQSDLFE-AL   94 (170)
T ss_dssp             HHHHHHHHHH--TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHH---HTTCTTEEEEESSTTT-TC
T ss_pred             HHHHHHHhhc--cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH---hcCccccccccccccc-cc
Confidence            3444444432  5689999999999999999987776689999999999999976443   23333 7777777643 33


Q ss_pred             CCCccceEEEe
Q 030823          158 KERYACRFFVL  168 (171)
Q Consensus       158 ~~~sfDlV~s~  168 (171)
                      ++++||+|+||
T Consensus        95 ~~~~fD~Iv~N  105 (170)
T PF05175_consen   95 PDGKFDLIVSN  105 (170)
T ss_dssp             CTTCEEEEEE-
T ss_pred             cccceeEEEEc
Confidence            47999999997

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.16  E-value=3.9e-10  Score=90.35  Aligned_cols=89  Identities=13%  Similarity=0.082  Sum_probs=67.4

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE  153 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e  153 (171)
                      .+...+.+.+.  ..+..+|||+|||+|.++..+++.. +.++|+++|++++|++.+++...   ..+. ++.++++|..
T Consensus        63 ~~~~~~~~~l~--~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~---~~g~~~v~~~~gd~~  137 (212)
T PRK13942         63 HMVAIMCELLD--LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLK---KLGYDNVEVIVGDGT  137 (212)
T ss_pred             HHHHHHHHHcC--CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCeEEEECCcc
Confidence            34444444443  2456899999999999998887643 34699999999999999987543   2333 5788999988


Q ss_pred             CCCCCCCccceEEEec
Q 030823          154 FLPLKERYACRFFVLA  169 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~  169 (171)
                      ..+.+++.||+|++.+
T Consensus       138 ~~~~~~~~fD~I~~~~  153 (212)
T PRK13942        138 LGYEENAPYDRIYVTA  153 (212)
T ss_pred             cCCCcCCCcCEEEECC
Confidence            7776778999998864

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=99.16  E-value=5.5e-10  Score=80.25  Aligned_cols=77  Identities=12%  Similarity=0.024  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..+.+..+..+|+++|+|+.|++.+++....  ....++.++.+|... ++...++||.|++..
T Consensus        19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~D~v~~~~   96 (124)
T TIGR02469        19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARR--FGVSNIVIVEGDAPEALEDSLPEPDRVFIGG   96 (124)
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHH--hCCCceEEEeccccccChhhcCCCCEEEECC
Confidence            35799999999999999998765557999999999999999764321  111246777788764 444457999999864

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=99.15  E-value=4.6e-10  Score=89.34  Aligned_cols=77  Identities=10%  Similarity=-0.086  Sum_probs=60.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .+..+|||+|||+|.++..+.+.. +.++|+++|++++|++.+++...   ..+.  ++.++.+|....+.+.++||+|+
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~---~~~~~~~v~~~~~d~~~~~~~~~~fD~Ii  147 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIE---RLGYWGVVEVYHGDGKRGLEKHAPFDAII  147 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCcEEEEECCcccCCccCCCccEEE
Confidence            456899999999999998887643 24699999999999999986542   2232  37788899877655678999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +++
T Consensus       148 ~~~  150 (205)
T PRK13944        148 VTA  150 (205)
T ss_pred             Ecc
Confidence            875

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=99.15  E-value=1.6e-10  Score=96.38  Aligned_cols=73  Identities=14%  Similarity=0.029  Sum_probs=60.0

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ..+|||+|||+|.++..|++.+  .+|+++|+|++|++.+++...   ..++++.+.+.|....++ +++||+|+++.+
T Consensus       121 ~~~vLDlGcG~G~~~~~la~~g--~~V~avD~s~~ai~~~~~~~~---~~~l~v~~~~~D~~~~~~-~~~fD~I~~~~v  193 (287)
T PRK12335        121 PGKALDLGCGQGRNSLYLALLG--FDVTAVDINQQSLENLQEIAE---KENLNIRTGLYDINSASI-QEEYDFILSTVV  193 (287)
T ss_pred             CCCEEEeCCCCCHHHHHHHHCC--CEEEEEECCHHHHHHHHHHHH---HcCCceEEEEechhcccc-cCCccEEEEcch
Confidence            4699999999999999998743  699999999999999876542   244567778889887776 789999998753

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=99.13  E-value=1.5e-10  Score=96.03  Aligned_cols=94  Identities=15%  Similarity=0.150  Sum_probs=70.1

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      .++++-.....+++.+++.+.  ..+..+|||+|||+|.++..|.+.+  .+|+++|++++|++.+++..     ...++
T Consensus        19 ~~gq~fl~~~~i~~~i~~~l~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~avE~d~~~~~~~~~~~-----~~~~v   89 (272)
T PRK00274         19 SLGQNFLIDENILDKIVDAAG--PQPGDNVLEIGPGLGALTEPLLERA--AKVTAVEIDRDLAPILAETF-----AEDNL   89 (272)
T ss_pred             ccCcCcCCCHHHHHHHHHhcC--CCCcCeEEEeCCCccHHHHHHHHhC--CcEEEEECCHHHHHHHHHhh-----ccCce
Confidence            355543344456666666543  2355789999999999999999864  49999999999999997642     12467


Q ss_pred             eEEEccCCCCCCCCCccceEEEe
Q 030823          146 CFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++++|...+++++-.+|.|++|
T Consensus        90 ~~i~~D~~~~~~~~~~~~~vv~N  112 (272)
T PRK00274         90 TIIEGDALKVDLSELQPLKVVAN  112 (272)
T ss_pred             EEEEChhhcCCHHHcCcceEEEe
Confidence            88999999998865336888876

>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=99.13  E-value=1.3e-11  Score=86.60  Aligned_cols=73  Identities=15%  Similarity=-0.074  Sum_probs=43.1

Q ss_pred             EEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEecc
Q 030823           96 LCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERYACRFFVLAL  170 (171)
Q Consensus        96 LDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s~~~  170 (171)
                      ||||||+|.++..+.+..+..+++++|+|+.|++.++++...  ........+..+.....  ..+++||+|+++.+
T Consensus         1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v   75 (99)
T PF08242_consen    1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAE--LGNDNFERLRFDVLDLFDYDPPESFDLVVASNV   75 (99)
T ss_dssp             -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHH--CT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred             CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhh--cCCcceeEEEeecCChhhcccccccceehhhhh
Confidence            799999999999998876778999999999999877654321  11122333343333322  22369999999864

The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=99.13  E-value=3.7e-10  Score=98.92  Aligned_cols=75  Identities=13%  Similarity=-0.097  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..++...+..+|+++|+|++|++.+++...   ..+.++.++.+|.....+ .+++||+|+||
T Consensus       251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~---~~g~rV~fi~gDl~e~~l~~~~~FDLIVSN  326 (423)
T PRK14966        251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAA---DLGARVEFAHGSWFDTDMPSEGKWDIIVSN  326 (423)
T ss_pred             CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEEcchhccccccCCCccEEEEC
Confidence            3468999999999999988865566799999999999999987542   234468889999755433 24689999996

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=99.12  E-value=1.5e-10  Score=86.76  Aligned_cols=68  Identities=19%  Similarity=0.130  Sum_probs=54.6

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+..+|||||||+|.++..+.+.+  .+++|+|+|+.|++. .           ...+...+....++++++||+|+++
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~~~g~D~~~~~~~~-~-----------~~~~~~~~~~~~~~~~~~fD~i~~~   85 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRG--FEVTGVDISPQMIEK-R-----------NVVFDNFDAQDPPFPDGSFDLIICN   85 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTT--SEEEEEESSHHHHHH-T-----------TSEEEEEECHTHHCHSSSEEEEEEE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhC--CEEEEEECCHHHHhh-h-----------hhhhhhhhhhhhhccccchhhHhhH
Confidence            3567899999999999999998754  499999999999988 1           1334455555667789999999998


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus        86 ~~   87 (161)
T PF13489_consen   86 DV   87 (161)
T ss_dssp             SS
T ss_pred             HH
Confidence            64

...

>TIGR02081 metW methionine biosynthesis protein MetW

Probab=99.12  E-value=2.8e-10  Score=89.47  Aligned_cols=69  Identities=16%  Similarity=0.118  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-C-CCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-L-PLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-L-Pf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+.+.. ...++|+|+|++|+..+++       .+  +.++++|.+. + ++++++||+|+++
T Consensus        13 ~~~~iLDiGcG~G~~~~~l~~~~-~~~~~giD~s~~~i~~a~~-------~~--~~~~~~d~~~~l~~~~~~sfD~Vi~~   82 (194)
T TIGR02081        13 PGSRVLDLGCGDGELLALLRDEK-QVRGYGIEIDQDGVLACVA-------RG--VNVIQGDLDEGLEAFPDKSFDYVILS   82 (194)
T ss_pred             CCCEEEEeCCCCCHHHHHHHhcc-CCcEEEEeCCHHHHHHHHH-------cC--CeEEEEEhhhcccccCCCCcCEEEEh
Confidence            45799999999999999887643 3578999999999999864       22  4567888765 5 4788999999997


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus        83 ~   83 (194)
T TIGR02081        83 Q   83 (194)
T ss_pred             h
Confidence            5

This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=99.12  E-value=7.6e-10  Score=88.52  Aligned_cols=88  Identities=15%  Similarity=0.062  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      +...+.+.+.  ..+..+|||+|||+|.++..|++..+ .++|+++|++++|++.|++...   ..+. ++.++++|...
T Consensus        65 ~~~~~~~~l~--~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~---~~g~~~v~~~~~d~~~  139 (215)
T TIGR00080        65 MVAMMTELLE--LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLR---KLGLDNVIVIVGDGTQ  139 (215)
T ss_pred             HHHHHHHHhC--CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HCCCCCeEEEECCccc
Confidence            3344444443  24568999999999999999987532 4579999999999999987543   2333 57889999877


Q ss_pred             CCCCCCccceEEEec
Q 030823          155 LPLKERYACRFFVLA  169 (171)
Q Consensus       155 LPf~~~sfDlV~s~~  169 (171)
                      .+...+.||+|++.+
T Consensus       140 ~~~~~~~fD~Ii~~~  154 (215)
T TIGR00080       140 GWEPLAPYDRIYVTA  154 (215)
T ss_pred             CCcccCCCCEEEEcC
Confidence            655567999999864

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins

Probab=99.11  E-value=8.6e-10  Score=87.63  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=56.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...+.++||+|||.|.++..|+++.  .+++++|+|+..+++|+++..    ...++.|+++|.-.. .+++.||||+.+
T Consensus        41 ~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~----~~~~V~~~~~dvp~~-~P~~~FDLIV~S  113 (201)
T PF05401_consen   41 RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLA----GLPHVEWIQADVPEF-WPEGRFDLIVLS  113 (201)
T ss_dssp             TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTT----T-SSEEEEES-TTT----SS-EEEEEEE
T ss_pred             ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcC----CCCCeEEEECcCCCC-CCCCCeeEEEEe
Confidence            4567899999999999999999854  899999999999999998652    224788999997654 468999999998


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus       114 EV  115 (201)
T PF05401_consen  114 EV  115 (201)
T ss_dssp             S-
T ss_pred             hH
Confidence            65

The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.

>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase

Probab=99.10  E-value=1.7e-10  Score=91.08  Aligned_cols=76  Identities=9%  Similarity=0.107  Sum_probs=62.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP---f~~~sfDlV~  166 (171)
                      ....+||||||+|.++..++...+...|+|+|++++|++.+++...   ..+. ++.++++|+..++   ++++++|.|+
T Consensus        16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~---~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~   92 (194)
T TIGR00091        16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKAN---KLGLKNLHVLCGDANELLDKFFPDGSLSKVF   92 (194)
T ss_pred             CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH---HhCCCCEEEEccCHHHHHHhhCCCCceeEEE
Confidence            4578999999999999999987777899999999999999876542   1222 6888999987664   5667999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus        93 ~~~   95 (194)
T TIGR00091        93 LNF   95 (194)
T ss_pred             EEC
Confidence            874

In E. coli, this protein flanks the DNA repair protein MutY, also called micA.

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=99.10  E-value=1e-09  Score=85.78  Aligned_cols=94  Identities=16%  Similarity=0.114  Sum_probs=68.4

Q ss_pred             CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030823           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF  147 (171)
Q Consensus        69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~  147 (171)
                      ......+.+...+.+.+. + .+..+|||+|||+|.++..+.+.++..+|+++|+|++|++.+++...   ..+. ++.+
T Consensus        11 ~~~~~~~~~r~~~~~~l~-~-~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~---~~~~~~i~~   85 (187)
T PRK08287         11 KVPMTKEEVRALALSKLE-L-HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQ---RFGCGNIDI   85 (187)
T ss_pred             CCCCchHHHHHHHHHhcC-C-CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCeEE
Confidence            455666666665555553 2 35679999999999999999876666799999999999999976432   1222 4667


Q ss_pred             EEccCCCCCCCCCccceEEEec
Q 030823          148 VVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +.+|.. .++ +++||+|++..
T Consensus        86 ~~~d~~-~~~-~~~~D~v~~~~  105 (187)
T PRK08287         86 IPGEAP-IEL-PGKADAIFIGG  105 (187)
T ss_pred             EecCch-hhc-CcCCCEEEECC
Confidence            778764 344 46899999865

>TIGR00537 hemK_rel_arch HemK-related putative methylase

Probab=99.08  E-value=6.3e-10  Score=86.35  Aligned_cols=71  Identities=15%  Similarity=0.069  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++...   ..+.++.++.+|....+  +++||+|+++
T Consensus        19 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~--~~~fD~Vi~n   89 (179)
T TIGR00537        19 KPDDVLEIGAGTGLVAIRLKGKG--KCILTTDINPFAVKELRENAK---LNNVGLDVVMTDLFKGV--RGKFDVILFN   89 (179)
T ss_pred             CCCeEEEeCCChhHHHHHHHhcC--CEEEEEECCHHHHHHHHHHHH---HcCCceEEEEccccccc--CCcccEEEEC
Confidence            34789999999999999998865  389999999999999987542   23446777888876654  4599999987

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=99.07  E-value=1.1e-09  Score=88.43  Aligned_cols=75  Identities=17%  Similarity=0.076  Sum_probs=60.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ....+|||+|||+|.++..+....+..+++++|+|+.|++.+++...   ..+. ++.++.+|... ++++++||+|+++
T Consensus        86 ~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n  161 (251)
T TIGR03534        86 KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAA---RLGLDNVTFLQSDWFE-PLPGGKFDLIVSN  161 (251)
T ss_pred             cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEECchhc-cCcCCceeEEEEC
Confidence            34468999999999999999876666799999999999999986442   2233 47788899865 5678899999985

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>smart00138 MeTrc Methyltransferase, chemotaxis proteins

Probab=99.06  E-value=9.3e-10  Score=91.08  Aligned_cols=79  Identities=11%  Similarity=-0.054  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCCCcH----HHHHHhhcCC-----CcEEEEEeCCHHHHHHHHHhhhhh---c-------------cC----
Q 030823           91 TFPTALCLGGSLEA----VRRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQDA---H-------------ND----  141 (171)
Q Consensus        91 ~~~~vLDlGcGtG~----l~~~L~~~~~-----~~~v~gvD~S~~mL~~a~~~~~~~---~-------------~~----  141 (171)
                      +..+|+|+|||||.    ++..|.+..+     ..+|+|+|+|++||+.|++.....   .             ..    
T Consensus        99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~  178 (264)
T smart00138       99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR  178 (264)
T ss_pred             CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence            34689999999996    4555544322     358999999999999998642100   0             00    


Q ss_pred             ---C--CceeEEEccCCCCCCCCCccceEEEec
Q 030823          142 ---N--IETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       142 ---~--~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                         .  -.+.|.++|....|+++++||+|+|..
T Consensus       179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crn  211 (264)
T smart00138      179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRN  211 (264)
T ss_pred             EChHHhCcCEEeeccCCCCCCccCCCCEEEech
Confidence               0  147789999999988889999999853

Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=99.05  E-value=6.9e-10  Score=98.21  Aligned_cols=73  Identities=15%  Similarity=0.120  Sum_probs=59.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~LPf~~~sfDlV~s~  168 (171)
                      +..+|||||||+|.++..|.+.  ..+|+|+|+|++|++.+++..    ....++.++++|.+  .+|+++++||+|+++
T Consensus        37 ~~~~vLDlGcG~G~~~~~la~~--~~~v~giD~s~~~l~~a~~~~----~~~~~i~~~~~d~~~~~~~~~~~~fD~I~~~  110 (475)
T PLN02336         37 EGKSVLELGAGIGRFTGELAKK--AGQVIALDFIESVIKKNESIN----GHYKNVKFMCADVTSPDLNISDGSVDLIFSN  110 (475)
T ss_pred             CCCEEEEeCCCcCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHh----ccCCceEEEEecccccccCCCCCCEEEEehh
Confidence            4568999999999999999874  369999999999999876421    12235778899985  578889999999987


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       111 ~  111 (475)
T PLN02336        111 W  111 (475)
T ss_pred             h
Confidence            4

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=99.05  E-value=3e-10  Score=93.55  Aligned_cols=70  Identities=16%  Similarity=0.087  Sum_probs=53.7

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC------ceeEEEccCCCCCCCCCccceEE
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI------ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~------~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .+|||+|||+|.++..|++.+  +.|+|+|++++|++.|+++..  ..+..      .+.+.+.+.|.+--   .||.|+
T Consensus        91 ~~ilDvGCGgGLLSepLArlg--a~V~GID~s~~~V~vA~~h~~--~dP~~~~~~~y~l~~~~~~~E~~~~---~fDaVv  163 (282)
T KOG1270|consen   91 MKILDVGCGGGLLSEPLARLG--AQVTGIDASDDMVEVANEHKK--MDPVLEGAIAYRLEYEDTDVEGLTG---KFDAVV  163 (282)
T ss_pred             ceEEEeccCccccchhhHhhC--CeeEeecccHHHHHHHHHhhh--cCchhccccceeeehhhcchhhccc---ccceee
Confidence            679999999999999999854  899999999999999988632  11111      24456667666543   399999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      |+.
T Consensus       164 cse  166 (282)
T KOG1270|consen  164 CSE  166 (282)
T ss_pred             eHH
Confidence            874

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=99.04  E-value=9.9e-10  Score=90.45  Aligned_cols=92  Identities=14%  Similarity=0.107  Sum_probs=69.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      +||+=-+...+++.+++.+.  ..+..+|||+|||+|.++..+.+.  ..+|+++|+++.|++.+++...    ...++.
T Consensus         7 ~GQnfl~d~~~~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~L~~~--~~~v~~vEid~~~~~~l~~~~~----~~~~v~   78 (258)
T PRK14896          7 LGQHFLIDDRVVDRIVEYAE--DTDGDPVLEIGPGKGALTDELAKR--AKKVYAIELDPRLAEFLRDDEI----AAGNVE   78 (258)
T ss_pred             CCccccCCHHHHHHHHHhcC--CCCcCeEEEEeCccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHhc----cCCCEE
Confidence            34433334556666666543  234589999999999999999985  3699999999999999986431    123578


Q ss_pred             EEEccCCCCCCCCCccceEEEe
Q 030823          147 FVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++++|...++++  .||.|++|
T Consensus        79 ii~~D~~~~~~~--~~d~Vv~N   98 (258)
T PRK14896         79 IIEGDALKVDLP--EFNKVVSN   98 (258)
T ss_pred             EEEeccccCCch--hceEEEEc
Confidence            899999998875  48999987

>TIGR00452 methyltransferase, putative

Probab=99.03  E-value=1.9e-09  Score=91.52  Aligned_cols=78  Identities=14%  Similarity=0.026  Sum_probs=57.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+...+ ...|+|+|+|+.|+.+++..... ......+.+..++.+.+|.. ++||+|+|+.
T Consensus       120 ~~g~~VLDvGCG~G~~~~~~~~~g-~~~v~GiDpS~~ml~q~~~~~~~-~~~~~~v~~~~~~ie~lp~~-~~FD~V~s~g  196 (314)
T TIGR00452       120 LKGRTILDVGCGSGYHMWRMLGHG-AKSLVGIDPTVLFLCQFEAVRKL-LDNDKRAILEPLGIEQLHEL-YAFDTVFSMG  196 (314)
T ss_pred             CCCCEEEEeccCCcHHHHHHHHcC-CCEEEEEcCCHHHHHHHHHHHHH-hccCCCeEEEECCHHHCCCC-CCcCEEEEcc
Confidence            345799999999999988887654 35899999999999876432110 01123466778899999864 5899999986


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       197 v  197 (314)
T TIGR00452       197 V  197 (314)
T ss_pred             h
Confidence            4

Known examples to date are restricted to the proteobacteria.

>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes

Probab=99.01  E-value=1.5e-09  Score=86.59  Aligned_cols=72  Identities=13%  Similarity=-0.041  Sum_probs=57.9

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEec
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +|||||||+|.++..+.+.++..+|+|+|+|++|++.+++...   ..+  .++.++.+|.+..|++ ++||+|++..
T Consensus         2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~---~~gl~~~i~~~~~d~~~~~~~-~~fD~I~~~~   75 (224)
T smart00828        2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIR---ALGLQGRIRIFYRDSAKDPFP-DTYDLVFGFE   75 (224)
T ss_pred             eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---hcCCCcceEEEecccccCCCC-CCCCEeehHH
Confidence            6999999999999999876655799999999999999987542   122  2467888998777774 6899999753

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=99.01  E-value=2.9e-09  Score=88.96  Aligned_cols=74  Identities=12%  Similarity=-0.044  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..++...+..+|+++|+|++|++.|++...   ..+.  ++.++.+|... ++++++||+|++|
T Consensus       121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~---~~~~~~~i~~~~~D~~~-~~~~~~fD~Iv~N  196 (284)
T TIGR03533       121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIE---RHGLEDRVTLIQSDLFA-ALPGRKYDLIVSN  196 (284)
T ss_pred             CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhh-ccCCCCccEEEEC
Confidence            4468999999999999999876666799999999999999987542   2233  47788898743 3446789999997

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR00536 hemK_fam HemK family putative methylases

Probab=99.00  E-value=3.3e-09  Score=88.45  Aligned_cols=72  Identities=17%  Similarity=0.119  Sum_probs=57.9

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+|||+|||+|.++..++...+..+|+++|+|+++++.+++...   ..+.  ++.++.+|... +++++.||+|+||
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~---~~~~~~~v~~~~~d~~~-~~~~~~fDlIvsN  189 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAE---KNQLEHRVEFIQSNLFE-PLAGQKIDIIVSN  189 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhc-cCcCCCccEEEEC
Confidence            68999999999999999876666799999999999999987432   2233  37888898754 4555689999997

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins

Probab=99.00  E-value=1.3e-09  Score=86.18  Aligned_cols=69  Identities=13%  Similarity=0.101  Sum_probs=57.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f~~~sfDlV~s  167 (171)
                      .+..+|||+|||.|.+...|.+. +.-..+|+|++++.+..+-+       +++++  +.+|.+ .|+ |++++||.|+.
T Consensus        12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~-------rGv~V--iq~Dld~gL~~f~d~sFD~VIl   81 (193)
T PF07021_consen   12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVA-------RGVSV--IQGDLDEGLADFPDQSFDYVIL   81 (193)
T ss_pred             CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHH-------cCCCE--EECCHHHhHhhCCCCCccEEeh
Confidence            56799999999999999999874 45689999999999998864       56555  788865 454 99999999987


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus        82 s   82 (193)
T PF07021_consen   82 S   82 (193)
T ss_pred             H
Confidence            5

Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=98.99  E-value=3.4e-09  Score=92.13  Aligned_cols=71  Identities=14%  Similarity=0.045  Sum_probs=57.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+++.. ..+|+|+|+|++|++.+++..     .+..+.+..+|...+   +++||+|++..
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~-----~~l~v~~~~~D~~~l---~~~fD~Ivs~~  236 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERC-----AGLPVEIRLQDYRDL---NGQFDRIVSVG  236 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHh-----ccCeEEEEECchhhc---CCCCCEEEEeC
Confidence            456799999999999999998754 359999999999999998753     334567777887665   57999999864

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.98  E-value=3.4e-09  Score=89.56  Aligned_cols=72  Identities=13%  Similarity=-0.049  Sum_probs=57.8

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+|||+|||+|.++..++...+..+|+++|+|+.+++.|++...   ..+.  ++.++.+|... ++++++||+|++|
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~---~~~l~~~i~~~~~D~~~-~l~~~~fDlIvsN  208 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIE---RHGLEDRVTLIESDLFA-ALPGRRYDLIVSN  208 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCCcEEEEECchhh-hCCCCCccEEEEC
Confidence            68999999999999999876667899999999999999987542   1232  47889999643 2345789999997

>PRK14967 putative methyltransferase; Provisional

Probab=98.96  E-value=2.4e-09  Score=86.09  Aligned_cols=73  Identities=12%  Similarity=-0.038  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..++..+ ..+|+++|+|++|++.+++...   ..+.++.++.+|... ++++++||+|+++
T Consensus        36 ~~~~vLDlGcG~G~~~~~la~~~-~~~v~~vD~s~~~l~~a~~n~~---~~~~~~~~~~~d~~~-~~~~~~fD~Vi~n  108 (223)
T PRK14967         36 PGRRVLDLCTGSGALAVAAAAAG-AGSVTAVDISRRAVRSARLNAL---LAGVDVDVRRGDWAR-AVEFRPFDVVVSN  108 (223)
T ss_pred             CCCeEEEecCCHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HhCCeeEEEECchhh-hccCCCeeEEEEC
Confidence            45799999999999999888743 3599999999999999876432   234456777888755 3567899999997

>PHA03411 putative methyltransferase; Provisional

Probab=98.96  E-value=4.2e-09  Score=87.78  Aligned_cols=69  Identities=12%  Similarity=0.026  Sum_probs=56.7

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..+..+.+..+|+++|+++.|++.+++..       .++.++++|...++. +++||+|++|
T Consensus        65 ~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-------~~v~~v~~D~~e~~~-~~kFDlIIsN  133 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-------PEAEWITSDVFEFES-NEKFDVVISN  133 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-------cCCEEEECchhhhcc-cCCCcEEEEc
Confidence            47899999999999988876544469999999999999997631       246788999887764 5789999996

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=98.96  E-value=4.2e-09  Score=83.63  Aligned_cols=73  Identities=15%  Similarity=0.032  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..++||+|||.|..+..|++.+  -.|+++|.|+..++.+.+...   ..++++...+.|.+...++ +.||+|+|..
T Consensus        30 ~~g~~LDlgcG~GRNalyLA~~G--~~VtAvD~s~~al~~l~~~a~---~~~l~i~~~~~Dl~~~~~~-~~yD~I~st~  102 (192)
T PF03848_consen   30 KPGKALDLGCGEGRNALYLASQG--FDVTAVDISPVALEKLQRLAE---EEGLDIRTRVADLNDFDFP-EEYDFIVSTV  102 (192)
T ss_dssp             -SSEEEEES-TTSHHHHHHHHTT---EEEEEESSHHHHHHHHHHHH---HTT-TEEEEE-BGCCBS-T-TTEEEEEEES
T ss_pred             CCCcEEEcCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHh---hcCceeEEEEecchhcccc-CCcCEEEEEE
Confidence            35899999999999999999854  699999999999998876542   3567788899999988874 7899999853

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>TIGR03438 probable methyltransferase

Probab=98.95  E-value=6.2e-09  Score=87.55  Aligned_cols=70  Identities=21%  Similarity=0.116  Sum_probs=52.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKER  160 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~  160 (171)
                      .+..+|||+|||||..+..|.+..+ ..+|+++|+|++||+.+.++... ..+++++.++++|... +++++.
T Consensus        62 ~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~-~~p~~~v~~i~gD~~~~~~~~~~  133 (301)
T TIGR03438        62 GAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAA-DYPQLEVHGICADFTQPLALPPE  133 (301)
T ss_pred             CCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHh-hCCCceEEEEEEcccchhhhhcc
Confidence            3457899999999999999987543 46899999999999999775321 1245567788999875 455443

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=98.95  E-value=3.3e-09  Score=92.04  Aligned_cols=75  Identities=9%  Similarity=-0.005  Sum_probs=57.4

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..+.+.++..+|+++|.|+.|++.+++.... ....  .++.++..|... .+++++||+|+||
T Consensus       229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~-n~~~~~~~v~~~~~D~l~-~~~~~~fDlIlsN  305 (378)
T PRK15001        229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET-NMPEALDRCEFMINNALS-GVEPFRFNAVLCN  305 (378)
T ss_pred             CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH-cCcccCceEEEEEccccc-cCCCCCEEEEEEC
Confidence            3689999999999999998877778999999999999999864321 1111  146777777643 2345789999997

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=98.95  E-value=8.4e-09  Score=86.24  Aligned_cols=76  Identities=9%  Similarity=-0.046  Sum_probs=55.4

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+..+|||+|||+|.++..+...+ ..+|+++|+|+.|++.+++...   ..++  .+....++  ..++.+++||+|+
T Consensus       157 ~~~g~~VLDvGcGsG~lai~aa~~g-~~~V~avDid~~al~~a~~n~~---~n~~~~~~~~~~~~--~~~~~~~~fDlVv  230 (288)
T TIGR00406       157 DLKDKNVIDVGCGSGILSIAALKLG-AAKVVGIDIDPLAVESARKNAE---LNQVSDRLQVKLIY--LEQPIEGKADVIV  230 (288)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HcCCCcceEEEecc--cccccCCCceEEE
Confidence            3456899999999999998887643 4699999999999999987432   1222  23334444  3344578999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++.+
T Consensus       231 an~~  234 (288)
T TIGR00406       231 ANIL  234 (288)
T ss_pred             EecC
Confidence            9754

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=98.94  E-value=1e-08  Score=81.60  Aligned_cols=88  Identities=14%  Similarity=-0.019  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE  153 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e  153 (171)
                      ..+...+.+.+.  ..+..+|||+|||+|.++..|++..  .+|+++|.+++|++.+++...   ..+. ++.++.+|..
T Consensus        64 p~~~~~l~~~l~--~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~---~~~~~~v~~~~~d~~  136 (212)
T PRK00312         64 PYMVARMTELLE--LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLK---QLGLHNVSVRHGDGW  136 (212)
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHH---HCCCCceEEEECCcc
Confidence            344444544332  2456899999999999998887643  589999999999999987542   1233 4778888875


Q ss_pred             CCCCCCCccceEEEec
Q 030823          154 FLPLKERYACRFFVLA  169 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~  169 (171)
                      ....+.++||+|++.+
T Consensus       137 ~~~~~~~~fD~I~~~~  152 (212)
T PRK00312        137 KGWPAYAPFDRILVTA  152 (212)
T ss_pred             cCCCcCCCcCEEEEcc
Confidence            4333458999999864

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=98.94  E-value=3.8e-09  Score=90.58  Aligned_cols=72  Identities=11%  Similarity=-0.005  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..+.+..+..+|+++|+|+.|++.+++...   ..++...++.+|...  ..++.||+|+||
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~---~n~l~~~~~~~D~~~--~~~~~fDlIvsN  268 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLA---ANGLEGEVFASNVFS--DIKGRFDMIISN  268 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCEEEEccccc--ccCCCccEEEEC
Confidence            468999999999999999887666799999999999999986442   233445556666543  236899999997

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=98.94  E-value=4e-09  Score=92.66  Aligned_cols=93  Identities=14%  Similarity=0.063  Sum_probs=69.7

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~  150 (171)
                      -++++..+..+...+.  ..+..+|||+|||+|..+..+.+..+.++|+++|+|+.|++.+++...   ..+.++.++++
T Consensus       226 ~~iQd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~---~~g~~~~~~~~  300 (427)
T PRK10901        226 VSVQDAAAQLAATLLA--PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQ---RLGLKATVIVG  300 (427)
T ss_pred             EEEECHHHHHHHHHcC--CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEc
Confidence            3456666555555443  245689999999999999999876544799999999999999987542   23445678889


Q ss_pred             cCCCCC--CCCCccceEEEe
Q 030823          151 DEEFLP--LKERYACRFFVL  168 (171)
Q Consensus       151 D~e~LP--f~~~sfDlV~s~  168 (171)
                      |...++  +++++||.|++.
T Consensus       301 D~~~~~~~~~~~~fD~Vl~D  320 (427)
T PRK10901        301 DARDPAQWWDGQPFDRILLD  320 (427)
T ss_pred             CcccchhhcccCCCCEEEEC
Confidence            988765  456789999964

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=98.93  E-value=2.1e-09  Score=77.08  Aligned_cols=72  Identities=17%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCC--CCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLP--LKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LP--f~~~sfDlV~s~  168 (171)
                      .+|||+|||+|.++..+.+.+ ..+++++|+++..++.++....   ..+  .++.++++|...++  +++++||+|++|
T Consensus         2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~---~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n   77 (117)
T PF13659_consen    2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLP---RNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN   77 (117)
T ss_dssp             EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCH---HCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred             CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHH---HccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence            479999999999999998866 6899999999999999986543   222  25788999988775  889999999987

...

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=98.93  E-value=4.1e-09  Score=89.11  Aligned_cols=73  Identities=10%  Similarity=-0.043  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf-~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..++..  ..+|+|+|+|++|++.|++...   ..++ ++.|+++|.+.++. .++.||+|+++
T Consensus       173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~---~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d  247 (315)
T PRK03522        173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAA---ELGLTNVQFQALDSTQFATAQGEVPDLVLVN  247 (315)
T ss_pred             CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence            3579999999999999999984  4799999999999999986442   2333 58899999887643 34679999975

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=98.93  E-value=1e-08  Score=84.13  Aligned_cols=76  Identities=20%  Similarity=0.103  Sum_probs=59.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..++...+..+++++|+|+++++.+++...  .....++.++.+|... ++++++||+|+++
T Consensus       107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~--~~~~~~i~~~~~d~~~-~~~~~~fD~Iv~n  182 (275)
T PRK09328        107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK--HGLGARVEFLQGDWFE-PLPGGRFDLIVSN  182 (275)
T ss_pred             cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH--hCCCCcEEEEEccccC-cCCCCceeEEEEC
Confidence            35578999999999999999876666899999999999999987432  0122357788888743 3446899999986

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=98.93  E-value=3.7e-09  Score=91.94  Aligned_cols=76  Identities=11%  Similarity=-0.011  Sum_probs=63.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC--CCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL--PLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L--Pf~~~sfDlV~s  167 (171)
                      ..+.+||||||+|.++..++...+...++|+|+++.|+..+.+...   ..+. ++.++.+|+..+  +++++++|.|++
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~---~~gL~NV~~i~~DA~~ll~~~~~~s~D~I~l  198 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIE---LLNLKNLLIINYDARLLLELLPSNSVEKIFV  198 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHhhhhCCCCceeEEEE
Confidence            4578999999999999999987778899999999999999876542   2333 688899998765  588999999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       199 nF  200 (390)
T PRK14121        199 HF  200 (390)
T ss_pred             eC
Confidence            74

>KOG3010 consensus Methyltransferase [General function prediction only]

Probab=98.92  E-value=2.3e-09  Score=87.38  Aligned_cols=73  Identities=19%  Similarity=0.126  Sum_probs=52.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC--CCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~--~~sfDlV~s~  168 (171)
                      ....++|+|||+|.-++.+++.  .++|+++|+|++||+.++.+..   .....+..-..+.+-.++.  ++|+|+|++.
T Consensus        33 ~h~~a~DvG~G~Gqa~~~iae~--~k~VIatD~s~~mL~~a~k~~~---~~y~~t~~~ms~~~~v~L~g~e~SVDlI~~A  107 (261)
T KOG3010|consen   33 GHRLAWDVGTGNGQAARGIAEH--YKEVIATDVSEAMLKVAKKHPP---VTYCHTPSTMSSDEMVDLLGGEESVDLITAA  107 (261)
T ss_pred             CcceEEEeccCCCcchHHHHHh--hhhheeecCCHHHHHHhhcCCC---cccccCCccccccccccccCCCcceeeehhh
Confidence            3457999999999888888885  4899999999999999975321   1111222233444445554  9999999874

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=98.92  E-value=6.6e-09  Score=88.31  Aligned_cols=91  Identities=14%  Similarity=-0.006  Sum_probs=67.8

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV  149 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~  149 (171)
                      ..+...++..|+... .+ .+...|||+|||||.++......  ...++|+|++++|+..++....   ..+. ++.++.
T Consensus       164 ~~l~~~la~~~~~l~-~~-~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~---~~g~~~i~~~~  236 (329)
T TIGR01177       164 GSMDPKLARAMVNLA-RV-TEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLE---HYGIEDFFVKR  236 (329)
T ss_pred             CCCCHHHHHHHHHHh-CC-CCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHH---HhCCCCCeEEe
Confidence            344455565555432 22 45678999999999998777653  4799999999999999876432   1222 356788


Q ss_pred             ccCCCCCCCCCccceEEEe
Q 030823          150 GDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s~  168 (171)
                      +|...+|+++++||+|+++
T Consensus       237 ~D~~~l~~~~~~~D~Iv~d  255 (329)
T TIGR01177       237 GDATKLPLSSESVDAIATD  255 (329)
T ss_pred             cchhcCCcccCCCCEEEEC
Confidence            9999999989999999986

This family is found exclusively in the Archaea.

>TIGR00755 ksgA dimethyladenosine transferase

Probab=98.92  E-value=7.2e-09  Score=84.93  Aligned_cols=92  Identities=13%  Similarity=0.075  Sum_probs=67.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      ++++=.....+++.+++.+.  ..+..+|||+|||+|.++..|.+.+  .+|+++|+++.|++.+++..    ....++.
T Consensus         7 ~gq~fl~d~~i~~~i~~~~~--~~~~~~VLEiG~G~G~lt~~L~~~~--~~v~~iE~d~~~~~~l~~~~----~~~~~v~   78 (253)
T TIGR00755         7 LGQNFLIDESVIQKIVEAAN--VLEGDVVLEIGPGLGALTEPLLKRA--KKVTAIEIDPRLAEILRKLL----SLYERLE   78 (253)
T ss_pred             CCCccCCCHHHHHHHHHhcC--CCCcCEEEEeCCCCCHHHHHHHHhC--CcEEEEECCHHHHHHHHHHh----CcCCcEE
Confidence            34433333455556655442  2356899999999999999999865  57999999999999997643    1134577


Q ss_pred             EEEccCCCCCCCCCccc---eEEEe
Q 030823          147 FVVGDEEFLPLKERYAC---RFFVL  168 (171)
Q Consensus       147 ~~~~D~e~LPf~~~sfD---lV~s~  168 (171)
                      ++.+|...+|++  ++|   +|++|
T Consensus        79 v~~~D~~~~~~~--~~d~~~~vvsN  101 (253)
T TIGR00755        79 VIEGDALKVDLP--DFPKQLKVVSN  101 (253)
T ss_pred             EEECchhcCChh--HcCCcceEEEc
Confidence            889999998875  566   77776

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=98.92  E-value=2.2e-09  Score=85.93  Aligned_cols=74  Identities=19%  Similarity=0.198  Sum_probs=59.5

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee-EEEccCCCCC-CCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC-FVVGDEEFLP-LKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~-~~~~D~e~LP-f~~~sfDlV~s~  168 (171)
                      ...+|++|||||..-..+.- .++-.|+++|+++.|-+.+.....  .+...++. |++++.|++| ++++|+|.|++.
T Consensus        77 K~~vLEvgcGtG~Nfkfy~~-~p~~svt~lDpn~~mee~~~ks~~--E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T  152 (252)
T KOG4300|consen   77 KGDVLEVGCGTGANFKFYPW-KPINSVTCLDPNEKMEEIADKSAA--EKKPLQVERFVVADGENLPQLADGSYDTVVCT  152 (252)
T ss_pred             ccceEEecccCCCCcccccC-CCCceEEEeCCcHHHHHHHHHHHh--hccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence            35689999999998877763 256799999999999999875431  12334566 8999999999 999999999975

>PHA03412 putative methyltransferase; Provisional

Probab=98.91  E-value=6.7e-09  Score=84.88  Aligned_cols=69  Identities=9%  Similarity=-0.007  Sum_probs=56.3

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcC---CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRG---GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~---~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..+.+..   +..+|+++|+++.|++.|++.       ...+.++.+|....++ +++||+|++|
T Consensus        50 ~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n-------~~~~~~~~~D~~~~~~-~~~FDlIIsN  121 (241)
T PHA03412         50 SGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRI-------VPEATWINADALTTEF-DTLFDMAISN  121 (241)
T ss_pred             CCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhh-------ccCCEEEEcchhcccc-cCCccEEEEC
Confidence            5799999999999999887531   235899999999999999852       1246788899887775 5799999997

>PRK04266 fibrillarin; Provisional

Probab=98.91  E-value=1.1e-08  Score=82.96  Aligned_cols=74  Identities=7%  Similarity=-0.024  Sum_probs=55.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..+++..+.++|+++|++++|++...+...    ...++.++.+|...    .++ +++||+|
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~----~~~nv~~i~~D~~~~~~~~~l-~~~~D~i  145 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAE----ERKNIIPILADARKPERYAHV-VEKVDVI  145 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhh----hcCCcEEEECCCCCcchhhhc-cccCCEE
Confidence            45689999999999999999875445699999999999997654321    12357778888764    223 3579999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      ++.
T Consensus       146 ~~d  148 (226)
T PRK04266        146 YQD  148 (226)
T ss_pred             EEC
Confidence            974

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=98.91  E-value=8e-09  Score=91.16  Aligned_cols=74  Identities=11%  Similarity=0.065  Sum_probs=58.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC----CCCCCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF----LPLKERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~----LPf~~~sfDl  164 (171)
                      .+..+|||+|||+|.++..|++..  .+|+|+|+|++|++.|++...   ..+. ++.++++|.+.    +++.+++||+
T Consensus       296 ~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~---~~~~~~v~~~~~d~~~~l~~~~~~~~~fD~  370 (443)
T PRK13168        296 QPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENAR---RNGLDNVTFYHANLEEDFTDQPWALGGFDK  370 (443)
T ss_pred             CCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEEeChHHhhhhhhhhcCCCCE
Confidence            355799999999999999998743  799999999999999986432   1233 57889999753    3466788999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+++
T Consensus       371 Vi~d  374 (443)
T PRK13168        371 VLLD  374 (443)
T ss_pred             EEEC
Confidence            9975

>PRK14968 putative methyltransferase; Provisional

Probab=98.89  E-value=2e-08  Score=77.48  Aligned_cols=76  Identities=13%  Similarity=-0.021  Sum_probs=56.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..++..  ..+++++|+|++|++.+++...........+.++.+|... ++.+++||+|+++
T Consensus        22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~-~~~~~~~d~vi~n   97 (188)
T PRK14968         22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFE-PFRGDKFDVILFN   97 (188)
T ss_pred             cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccc-cccccCceEEEEC
Confidence            34578999999999999999875  4799999999999999876432100111116677787654 4556699999976

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=98.88  E-value=1.1e-08  Score=85.47  Aligned_cols=74  Identities=11%  Similarity=-0.032  Sum_probs=59.0

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+.++|||||||.|.++..+++.+ ..+|+|+++|+++.+.++++..   ..+.  ++.....|...++   +.||-|+
T Consensus        70 L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~---~~gl~~~v~v~l~d~rd~~---e~fDrIv  142 (283)
T COG2230          70 LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIA---ARGLEDNVEVRLQDYRDFE---EPFDRIV  142 (283)
T ss_pred             CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHH---HcCCCcccEEEeccccccc---cccceee
Confidence            3678999999999999999999865 5799999999999999987542   2443  3666667766665   3499999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      |..
T Consensus       143 Svg  145 (283)
T COG2230         143 SVG  145 (283)
T ss_pred             ehh
Confidence            975

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=98.87  E-value=1.4e-08  Score=86.45  Aligned_cols=76  Identities=17%  Similarity=0.128  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      ++..+|||+|||+|.++..+++..+ .+.|+++|++++|++.|++...   ..+. ++.++.+|....+.+.++||+|++
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~---~~g~~nV~~i~gD~~~~~~~~~~fD~Ii~  155 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVR---RLGIENVIFVCGDGYYGVPEFAPYDVIFV  155 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEeCChhhcccccCCccEEEE
Confidence            3558999999999999999987543 3579999999999999987442   1233 477888998777666678999998


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus       156 ~  156 (322)
T PRK13943        156 T  156 (322)
T ss_pred             C
Confidence            5

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=98.85  E-value=2.4e-08  Score=78.87  Aligned_cols=76  Identities=14%  Similarity=0.093  Sum_probs=57.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCC-CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF-LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~-LPf~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..++.. ++..+|+++|++++|++.+++...   ..+  .++.++.+|... ++..++.||+|
T Consensus        39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~---~~g~~~~v~~~~~d~~~~l~~~~~~~D~V  115 (198)
T PRK00377         39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAE---KFGVLNNIVLIKGEAPEILFTINEKFDRI  115 (198)
T ss_pred             CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCCeEEEEechhhhHhhcCCCCCEE
Confidence            45689999999999999887653 345799999999999999876542   122  256778888865 34445789999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +++
T Consensus       116 ~~~  118 (198)
T PRK00377        116 FIG  118 (198)
T ss_pred             EEC
Confidence            984

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=98.84  E-value=1.8e-08  Score=84.19  Aligned_cols=70  Identities=24%  Similarity=0.256  Sum_probs=53.3

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEe
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +|||+|||||.++..++...+...|+++|+|++.++.|++...   ..+ .++.++.+|. .-++ .+.||+|+||
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~---~~~l~~~~~~~~dl-f~~~-~~~fDlIVsN  183 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAE---RNGLVRVLVVQSDL-FEPL-RGKFDLIVSN  183 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHH---HcCCccEEEEeeec-cccc-CCceeEEEeC
Confidence            7999999999999999987777899999999999999986432   233 3344455532 2233 3499999998

>KOG1271 consensus Methyltransferases [General function prediction only]

Probab=98.84  E-value=1.7e-08  Score=79.63  Aligned_cols=74  Identities=20%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ...++|||+|||.|++...|++.+-...++|+|.|++.++.|+...+   ..+.  .+.|.+.|+-.-.+.++.||+|.
T Consensus        66 ~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe---~~~~~n~I~f~q~DI~~~~~~~~qfdlvl  141 (227)
T KOG1271|consen   66 KQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAE---RDGFSNEIRFQQLDITDPDFLSGQFDLVL  141 (227)
T ss_pred             ccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHH---hcCCCcceeEEEeeccCCcccccceeEEe
Confidence            34459999999999999999876545679999999999999876543   2333  38899999988788889999985

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=98.84  E-value=1.2e-08  Score=84.96  Aligned_cols=82  Identities=13%  Similarity=0.058  Sum_probs=55.8

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP  156 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP  156 (171)
                      +.+++++.  .++..+|||||||.|.++..+++++ ..+|+|+.+|++..+.++++..   ..+.  .+.+.+.|...++
T Consensus        52 ~~~~~~~~--l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~---~~gl~~~v~v~~~D~~~~~  125 (273)
T PF02353_consen   52 DLLCEKLG--LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIR---EAGLEDRVEVRLQDYRDLP  125 (273)
T ss_dssp             HHHHTTTT----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHH---CSTSSSTEEEEES-GGG--
T ss_pred             HHHHHHhC--CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEEeeccccC
Confidence            44555442  3577899999999999999999875 3699999999999999987653   3443  4667788877665


Q ss_pred             CCCCccceEEEec
Q 030823          157 LKERYACRFFVLA  169 (171)
Q Consensus       157 f~~~sfDlV~s~~  169 (171)
                      .   +||.|+|..
T Consensus       126 ~---~fD~IvSi~  135 (273)
T PF02353_consen  126 G---KFDRIVSIE  135 (273)
T ss_dssp             ----S-SEEEEES
T ss_pred             C---CCCEEEEEe
Confidence            4   999999975

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=98.83  E-value=1e-08  Score=84.18  Aligned_cols=76  Identities=13%  Similarity=-0.007  Sum_probs=60.8

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..++.+....+|++||+.++|.+.|++.... +.-.-.+.++++|...+.  +.-.+||+|+||
T Consensus        45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l-n~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~N  122 (248)
T COG4123          45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL-NPLEERIQVIEADIKEFLKALVFASFDLIICN  122 (248)
T ss_pred             CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh-CcchhceeEehhhHHHhhhcccccccCEEEeC
Confidence            6899999999999999999876668999999999999999864321 111125788999988774  445689999997

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=98.83  E-value=2.4e-08  Score=89.71  Aligned_cols=73  Identities=14%  Similarity=0.046  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..++...+..+|+++|+|+++++.|++...   ..++  .+.++.+|... ++++++||+|+||
T Consensus       139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~---~~~l~~~v~~~~~D~~~-~~~~~~fDlIvsN  213 (506)
T PRK01544        139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAI---KYEVTDRIQIIHSNWFE-NIEKQKFDFIVSN  213 (506)
T ss_pred             CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHH---HcCCccceeeeecchhh-hCcCCCccEEEEC
Confidence            468999999999999988765566799999999999999986432   1222  46778888532 3446789999996

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=98.82  E-value=1.5e-08  Score=85.28  Aligned_cols=94  Identities=15%  Similarity=0.061  Sum_probs=67.4

Q ss_pred             CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030823           68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF  147 (171)
Q Consensus        68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~  147 (171)
                      +|+=.....+++.+++.+.  ..+..+|||||||+|.++..|.+.  ..+|+++|+++.|++.+++.... .....++.+
T Consensus        15 GQnFL~d~~i~~~Iv~~~~--~~~~~~VLEIG~G~G~LT~~Ll~~--~~~V~avEiD~~li~~l~~~~~~-~~~~~~v~i   89 (294)
T PTZ00338         15 GQHILKNPLVLDKIVEKAA--IKPTDTVLEIGPGTGNLTEKLLQL--AKKVIAIEIDPRMVAELKKRFQN-SPLASKLEV   89 (294)
T ss_pred             CccccCCHHHHHHHHHhcC--CCCcCEEEEecCchHHHHHHHHHh--CCcEEEEECCHHHHHHHHHHHHh-cCCCCcEEE
Confidence            4443334455566655442  235689999999999999999874  36899999999999999875421 011235778


Q ss_pred             EEccCCCCCCCCCccceEEEe
Q 030823          148 VVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +.+|+...++  ..||.|++|
T Consensus        90 i~~Dal~~~~--~~~d~VvaN  108 (294)
T PTZ00338         90 IEGDALKTEF--PYFDVCVAN  108 (294)
T ss_pred             EECCHhhhcc--cccCEEEec
Confidence            9999877766  368999886

>PRK07402 precorrin-6B methylase; Provisional

Probab=98.82  E-value=4.4e-08  Score=77.11  Aligned_cols=91  Identities=10%  Similarity=0.036  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG  150 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~  150 (171)
                      ..+.++...+.+.+. + .+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++...   ..+. ++.++.+
T Consensus        23 ~t~~~v~~~l~~~l~-~-~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~---~~~~~~v~~~~~   97 (196)
T PRK07402         23 LTKREVRLLLISQLR-L-EPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCD---RFGVKNVEVIEG   97 (196)
T ss_pred             CCHHHHHHHHHHhcC-C-CCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCCeEEEEC
Confidence            444555555555442 2 35579999999999999988765556799999999999999987542   1222 4777888


Q ss_pred             cCCC-CCCCCCccceEEE
Q 030823          151 DEEF-LPLKERYACRFFV  167 (171)
Q Consensus       151 D~e~-LPf~~~sfDlV~s  167 (171)
                      |.+. ++.....+|.|+.
T Consensus        98 d~~~~~~~~~~~~d~v~~  115 (196)
T PRK07402         98 SAPECLAQLAPAPDRVCI  115 (196)
T ss_pred             chHHHHhhCCCCCCEEEE
Confidence            8753 3332334677655

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=98.81  E-value=3.6e-08  Score=78.41  Aligned_cols=74  Identities=15%  Similarity=0.064  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC-CCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK-ERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~-~~sfDlV~s~  168 (171)
                      ...+|||+|||+|.++..+...+  .+++++|++++|+..+++...   ..+. ++.+..+|.+.++.+ +++||+|+++
T Consensus        45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~  119 (224)
T TIGR01983        45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAK---KDPLLKIEYRCTSVEDLAEKGAKSFDVVTCM  119 (224)
T ss_pred             CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHH---HcCCCceEEEeCCHHHhhcCCCCCccEEEeh
Confidence            35789999999999999887743  579999999999999876432   1333 477888888877755 4899999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       120 ~  120 (224)
T TIGR01983       120 E  120 (224)
T ss_pred             h
Confidence            3

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=98.80  E-value=2.9e-08  Score=81.61  Aligned_cols=72  Identities=14%  Similarity=-0.054  Sum_probs=54.6

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCC-CCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL-KERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf-~~~sfDlV~s~  168 (171)
                      ..+|||+|||+|.++..+....+..+|+++|+|+.+++.+++...   ..+  ..++.+|... ++- ..+.||+|++|
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~---~~~--~~~~~~D~~~~l~~~~~~~fDlVv~N  160 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLA---DAG--GTVHEGDLYDALPTALRGRVDILAAN  160 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcC--CEEEEeechhhcchhcCCCEeEEEEC
Confidence            358999999999999998865555699999999999999986432   122  3578888754 331 13689999987

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=98.80  E-value=3.9e-08  Score=79.10  Aligned_cols=77  Identities=9%  Similarity=-0.109  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh----------hccCCCceeEEEccCCCCCCC-C
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----------AHNDNIETCFVVGDEEFLPLK-E  159 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~----------~~~~~~~~~~~~~D~e~LPf~-~  159 (171)
                      +..+|||+|||.|..+..|++++  -+|+|+|+|+.+++.+.++..-          ....+.++.++++|...++.. .
T Consensus        34 ~~~rvLd~GCG~G~da~~LA~~G--~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~  111 (213)
T TIGR03840        34 AGARVFVPLCGKSLDLAWLAEQG--HRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL  111 (213)
T ss_pred             CCCeEEEeCCCchhHHHHHHhCC--CeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence            44799999999999999999854  7999999999999986432100          001234578899999888753 3


Q ss_pred             CccceEEEec
Q 030823          160 RYACRFFVLA  169 (171)
Q Consensus       160 ~sfDlV~s~~  169 (171)
                      +.||+|+-.+
T Consensus       112 ~~fD~i~D~~  121 (213)
T TIGR03840       112 GPVDAVYDRA  121 (213)
T ss_pred             CCcCEEEech
Confidence            5789887643

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=98.79  E-value=5e-08  Score=79.89  Aligned_cols=71  Identities=14%  Similarity=0.114  Sum_probs=49.4

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+..+|||+|||+|.++..+...+ ..+|+++|+|+.|++.+++...   ..++.      +...++..+.+||+|+++
T Consensus       117 ~~~~~~VLDiGcGsG~l~i~~~~~g-~~~v~giDis~~~l~~A~~n~~---~~~~~------~~~~~~~~~~~fD~Vvan  186 (250)
T PRK00517        117 VLPGKTVLDVGCGSGILAIAAAKLG-AKKVLAVDIDPQAVEAARENAE---LNGVE------LNVYLPQGDLKADVIVAN  186 (250)
T ss_pred             cCCCCEEEEeCCcHHHHHHHHHHcC-CCeEEEEECCHHHHHHHHHHHH---HcCCC------ceEEEccCCCCcCEEEEc
Confidence            3467899999999999998877644 3479999999999999986432   12221      101122222389999987


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       187 i  187 (250)
T PRK00517        187 I  187 (250)
T ss_pred             C
Confidence            4

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=98.77  E-value=3e-08  Score=87.11  Aligned_cols=92  Identities=13%  Similarity=0.010  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc--eeEEE
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--TCFVV  149 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~--~~~~~  149 (171)
                      ++++..+..+...+.  ..+..+|||+|||+|..+..+++..+.++|+++|++++|++.+++...   ..+..  +.+..
T Consensus       221 ~~Qd~~s~~~~~~L~--~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~---r~g~~~~v~~~~  295 (426)
T TIGR00563       221 TVQDASAQWVATWLA--PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLK---RLGLTIKAETKD  295 (426)
T ss_pred             EEECHHHHHHHHHhC--CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEec
Confidence            345566666555553  245689999999999999998875445799999999999999987543   23333  34466


Q ss_pred             ccCCCCCC--CCCccceEEEe
Q 030823          150 GDEEFLPL--KERYACRFFVL  168 (171)
Q Consensus       150 ~D~e~LPf--~~~sfDlV~s~  168 (171)
                      +|...+++  ++++||.|++.
T Consensus       296 ~d~~~~~~~~~~~~fD~VllD  316 (426)
T TIGR00563       296 GDGRGPSQWAENEQFDRILLD  316 (426)
T ss_pred             cccccccccccccccCEEEEc
Confidence            77665554  57899999964

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PLN03075 nicotianamine synthase; Provisional

Probab=98.76  E-value=5.3e-08  Score=82.00  Aligned_cols=78  Identities=9%  Similarity=0.051  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCCcHHHHHH--hhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L--~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      +..+|+|||||.|-++..+  +..++.++++++|.+++|++.|++....  ..++  .+.|..+|+..++-..+.||+|+
T Consensus       123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~--~~gL~~rV~F~~~Da~~~~~~l~~FDlVF  200 (296)
T PLN03075        123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSS--DPDLSKRMFFHTADVMDVTESLKEYDVVF  200 (296)
T ss_pred             CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhh--ccCccCCcEEEECchhhcccccCCcCEEE
Confidence            6689999999988554433  3445778999999999999999875421  1333  58899999877653457899999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      +.++
T Consensus       201 ~~AL  204 (296)
T PLN03075        201 LAAL  204 (296)
T ss_pred             Eecc
Confidence            9864

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=98.76  E-value=3.7e-08  Score=82.79  Aligned_cols=73  Identities=14%  Similarity=0.121  Sum_probs=56.6

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||+|||.|.++..+++..+..+++++|.+...++.+++...   ..+++...+..+.-..+.++ +||+|+||
T Consensus       159 ~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~---~N~~~~~~v~~s~~~~~v~~-kfd~IisN  231 (300)
T COG2813         159 GGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA---ANGVENTEVWASNLYEPVEG-KFDLIISN  231 (300)
T ss_pred             CCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH---HcCCCccEEEEecccccccc-cccEEEeC
Confidence            458999999999999999988888899999999999999986432   23343324444444555555 99999997

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=98.76  E-value=2.7e-08  Score=79.70  Aligned_cols=67  Identities=15%  Similarity=-0.022  Sum_probs=52.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER  160 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~~  160 (171)
                      .+..+|||||||||.++..+.+.. +.++|+++|+++ |.            +..++.++++|.+..+        +.++
T Consensus        50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~------------~~~~v~~i~~D~~~~~~~~~i~~~~~~~  116 (209)
T PRK11188         50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD------------PIVGVDFLQGDFRDELVLKALLERVGDS  116 (209)
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc------------CCCCcEEEecCCCChHHHHHHHHHhCCC
Confidence            456799999999999999887754 346999999998 31            1124678999988863        7789


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|+|+.
T Consensus       117 ~~D~V~S~~  125 (209)
T PRK11188        117 KVQVVMSDM  125 (209)
T ss_pred             CCCEEecCC
Confidence            999999864

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=98.74  E-value=6.7e-08  Score=81.43  Aligned_cols=79  Identities=16%  Similarity=0.069  Sum_probs=53.8

Q ss_pred             HHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccce
Q 030823           85 LEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACR  164 (171)
Q Consensus        85 L~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDl  164 (171)
                      |.....+..+|||+|||||-++..-+.. ...+|+++|+++..+..+++...   ..++.....+.....  ...+.||+
T Consensus       155 l~~~~~~g~~vLDvG~GSGILaiaA~kl-GA~~v~a~DiDp~Av~~a~~N~~---~N~~~~~~~v~~~~~--~~~~~~dl  228 (295)
T PF06325_consen  155 LEKYVKPGKRVLDVGCGSGILAIAAAKL-GAKKVVAIDIDPLAVEAARENAE---LNGVEDRIEVSLSED--LVEGKFDL  228 (295)
T ss_dssp             HHHHSSTTSEEEEES-TTSHHHHHHHHT-TBSEEEEEESSCHHHHHHHHHHH---HTT-TTCEEESCTSC--TCCS-EEE
T ss_pred             HHHhccCCCEEEEeCCcHHHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHH---HcCCCeeEEEEEecc--cccccCCE
Confidence            3444566789999999999999887774 34689999999999999987432   344433333332222  33499999


Q ss_pred             EEEec
Q 030823          165 FFVLA  169 (171)
Q Consensus       165 V~s~~  169 (171)
                      |++|=
T Consensus       229 vvANI  233 (295)
T PF06325_consen  229 VVANI  233 (295)
T ss_dssp             EEEES
T ss_pred             EEECC
Confidence            99984

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.1e-07  Score=75.11  Aligned_cols=71  Identities=15%  Similarity=0.076  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...+|+|+|||||.++...+-. ....|+|+|+.+++++.+++...   .-..++.|+++|...+.   +.||.|++|
T Consensus        45 ~g~~V~DlG~GTG~La~ga~~l-Ga~~V~~vdiD~~a~ei~r~N~~---~l~g~v~f~~~dv~~~~---~~~dtvimN  115 (198)
T COG2263          45 EGKTVLDLGAGTGILAIGAALL-GASRVLAVDIDPEALEIARANAE---ELLGDVEFVVADVSDFR---GKFDTVIMN  115 (198)
T ss_pred             CCCEEEEcCCCcCHHHHHHHhc-CCcEEEEEecCHHHHHHHHHHHH---hhCCceEEEEcchhhcC---CccceEEEC
Confidence            3457999999999998777653 34799999999999999987542   23447889999988876   456677765

>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy)

Probab=98.72  E-value=9.5e-08  Score=64.48  Aligned_cols=74  Identities=22%  Similarity=0.108  Sum_probs=56.5

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEEecc
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERYACRFFVLAL  170 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-~~~sfDlV~s~~~  170 (171)
                      +++|+|||+|.++..+.+ ....+++++|++++++..+++...  ......+.++.+|....+. ..+.||+|+++..
T Consensus         1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~   75 (107)
T cd02440           1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAA--ALLADNVEVLKGDAEELPPEADESFDVIISDPP   75 (107)
T ss_pred             CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHh--cccccceEEEEcChhhhccccCCceEEEEEccc
Confidence            489999999999998887 456799999999999998873211  1122356778888777653 5789999998753

There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=98.72  E-value=6.8e-08  Score=77.60  Aligned_cols=88  Identities=19%  Similarity=0.172  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      +...|.+.|.  .++.++|||||||+|.++..|+.. ++.+.|+++|..+++++.|++...   ..+. ++.++++|...
T Consensus        60 ~~a~~l~~L~--l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~---~~~~~nv~~~~gdg~~  134 (209)
T PF01135_consen   60 MVARMLEALD--LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLA---RLGIDNVEVVVGDGSE  134 (209)
T ss_dssp             HHHHHHHHTT--C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHH---HHTTHSEEEEES-GGG
T ss_pred             HHHHHHHHHh--cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHH---HhccCceeEEEcchhh
Confidence            3444555444  356799999999999999988763 345689999999999999987653   2233 68889999765


Q ss_pred             CCCCCCccceEEEec
Q 030823          155 LPLKERYACRFFVLA  169 (171)
Q Consensus       155 LPf~~~sfDlV~s~~  169 (171)
                      ---+...||.|++++
T Consensus       135 g~~~~apfD~I~v~~  149 (209)
T PF01135_consen  135 GWPEEAPFDRIIVTA  149 (209)
T ss_dssp             TTGGG-SEEEEEESS
T ss_pred             ccccCCCcCEEEEee
Confidence            433567899999865

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PRK14901 16S rRNA methyltransferase B; Provisional

Probab=98.71  E-value=5.3e-08  Score=85.79  Aligned_cols=91  Identities=14%  Similarity=0.036  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG  150 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~  150 (171)
                      +++..+..+...+.  ..+..+|||+|||+|..+..+++.. +.++|+++|++++|++.+++...   ..+. ++.++++
T Consensus       236 ~qd~~s~l~~~~l~--~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~---r~g~~~v~~~~~  310 (434)
T PRK14901        236 VQDRSAQLVAPLLD--PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQ---RLGLKSIKILAA  310 (434)
T ss_pred             EECHHHHHHHHHhC--CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHH---HcCCCeEEEEeC
Confidence            34444444443332  2456899999999999999887642 34699999999999999987543   2343 5778889


Q ss_pred             cCCCCC----CCCCccceEEEe
Q 030823          151 DEEFLP----LKERYACRFFVL  168 (171)
Q Consensus       151 D~e~LP----f~~~sfDlV~s~  168 (171)
                      |...++    +.+++||.|++.
T Consensus       311 D~~~~~~~~~~~~~~fD~Vl~D  332 (434)
T PRK14901        311 DSRNLLELKPQWRGYFDRILLD  332 (434)
T ss_pred             ChhhcccccccccccCCEEEEe
Confidence            998876    557899999974

>PRK00811 spermidine synthase; Provisional

Probab=98.70  E-value=9.3e-08  Score=79.90  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=61.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCC-CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEF-LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~-LPf~~~sfDlV  165 (171)
                      ....+||+||||+|.++..+.+.....+|+++|++++|++.+++......   ..+.++.++.+|+.. ++..+++||+|
T Consensus        75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI  154 (283)
T PRK00811         75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI  154 (283)
T ss_pred             CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence            34579999999999999999876567899999999999999987532100   023467788899754 34457899999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++.+
T Consensus       155 i~D~  158 (283)
T PRK00811        155 IVDS  158 (283)
T ss_pred             EECC
Confidence            9864

>TIGR00438 rrmJ cell division protein FtsJ

Probab=98.69  E-value=4.2e-08  Score=76.71  Aligned_cols=67  Identities=18%  Similarity=0.071  Sum_probs=50.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER  160 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~~  160 (171)
                      .+..+|||+|||||.++..+.... +..+|+++|+|+.|     .      ..  ++.++.+|....+        ++++
T Consensus        31 ~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~------~~--~i~~~~~d~~~~~~~~~l~~~~~~~   97 (188)
T TIGR00438        31 KPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----P------IE--NVDFIRGDFTDEEVLNKIRERVGDD   97 (188)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----c------CC--CceEEEeeCCChhHHHHHHHHhCCC
Confidence            456899999999999999887654 44689999999866     1      12  2556778876543        4577


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|++++
T Consensus        98 ~~D~V~~~~  106 (188)
T TIGR00438        98 KVDVVMSDA  106 (188)
T ss_pred             CccEEEcCC
Confidence            899999853

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=98.69  E-value=3.7e-07  Score=73.30  Aligned_cols=75  Identities=8%  Similarity=-0.048  Sum_probs=57.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-CCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-LKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-f~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|.++..+.+.  ..+++++|++++++..+++...   ..+..+.++.++.+.++ ..++.||+|+++
T Consensus        47 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~  121 (233)
T PRK05134         47 LFGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHAL---ESGLKIDYRQTTAEELAAEHPGQFDVVTCM  121 (233)
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHH---HcCCceEEEecCHHHhhhhcCCCccEEEEh
Confidence            35678999999999999988874  3689999999999999876431   12335667778877765 456899999875


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       122 ~  122 (233)
T PRK05134        122 E  122 (233)
T ss_pred             h
Confidence            3

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=98.69  E-value=6.5e-08  Score=81.48  Aligned_cols=78  Identities=13%  Similarity=-0.026  Sum_probs=54.4

Q ss_pred             cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce--eEEEccCCCCCCCCCccceE
Q 030823           88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET--CFVVGDEEFLPLKERYACRF  165 (171)
Q Consensus        88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~--~~~~~D~e~LPf~~~sfDlV  165 (171)
                      ...++.+|||+|||+|-++...++.+ ..+|+|+|+.|-.++.+++..   ...++..  .....+....+ ..+.||+|
T Consensus       159 ~~~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa---~~N~v~~~~~~~~~~~~~~~-~~~~~DvI  233 (300)
T COG2264         159 LLKKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENA---RLNGVELLVQAKGFLLLEVP-ENGPFDVI  233 (300)
T ss_pred             hhcCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHH---HHcCCchhhhcccccchhhc-ccCcccEE
Confidence            34578999999999999999888753 468999999999999998743   2334331  11122222222 23699999


Q ss_pred             EEecc
Q 030823          166 FVLAL  170 (171)
Q Consensus       166 ~s~~~  170 (171)
                      ++|=|
T Consensus       234 VANIL  238 (300)
T COG2264         234 VANIL  238 (300)
T ss_pred             Eehhh
Confidence            99843

>PTZ00146 fibrillarin; Provisional

Probab=98.69  E-value=7.4e-08  Score=80.98  Aligned_cols=99  Identities=10%  Similarity=0.048  Sum_probs=66.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030823           67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE  144 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~  144 (171)
                      |+.-++.+..+|..+..-+..+ ..+..+|||+|||+|.++..++... +.+.|+++|+|++|++...+..    ....+
T Consensus       107 yR~w~p~rSKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~a----k~r~N  182 (293)
T PTZ00146        107 YRVWNPFRSKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMA----KKRPN  182 (293)
T ss_pred             eeeeCCcccHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHh----hhcCC
Confidence            4444566666676665544444 2466899999999999999998743 3579999999997553332211    01135


Q ss_pred             eeEEEccCCC---CCCCCCccceEEEec
Q 030823          145 TCFVVGDEEF---LPLKERYACRFFVLA  169 (171)
Q Consensus       145 ~~~~~~D~e~---LPf~~~sfDlV~s~~  169 (171)
                      +.++++|+..   +++..++||+|++..
T Consensus       183 I~~I~~Da~~p~~y~~~~~~vDvV~~Dv  210 (293)
T PTZ00146        183 IVPIIEDARYPQKYRMLVPMVDVIFADV  210 (293)
T ss_pred             CEEEECCccChhhhhcccCCCCEEEEeC
Confidence            7778888753   233446899999854

>PRK14903 16S rRNA methyltransferase B; Provisional

Probab=98.69  E-value=5.7e-08  Score=85.68  Aligned_cols=92  Identities=11%  Similarity=0.040  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV  149 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~  149 (171)
                      ++++..+..+...+ .+ .+..+|||+|||+|..+.++++.. +.++|+++|+|++|++.+++...   ..+. ++.+++
T Consensus       220 ~~Qd~~s~~~~~~l-~~-~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~---r~g~~~v~~~~  294 (431)
T PRK14903        220 TVQGESSQIVPLLM-EL-EPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAK---RLKLSSIEIKI  294 (431)
T ss_pred             EEECHHHHHHHHHh-CC-CCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEE
Confidence            45555554443322 22 356799999999999998887643 45799999999999999987543   2343 467888


Q ss_pred             ccCCCCC-CCCCccceEEEe
Q 030823          150 GDEEFLP-LKERYACRFFVL  168 (171)
Q Consensus       150 ~D~e~LP-f~~~sfDlV~s~  168 (171)
                      +|...++ +.+++||.|++.
T Consensus       295 ~Da~~l~~~~~~~fD~Vl~D  314 (431)
T PRK14903        295 ADAERLTEYVQDTFDRILVD  314 (431)
T ss_pred             CchhhhhhhhhccCCEEEEC
Confidence            9988877 557899999974

>PRK04457 spermidine synthase; Provisional

Probab=98.68  E-value=6.1e-08  Score=80.19  Aligned_cols=80  Identities=5%  Similarity=0.004  Sum_probs=60.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|.++..+....+..+|+++|++++|++.|++.... .....++.++++|... ++-.+++||+|++.
T Consensus        65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~-~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D  143 (262)
T PRK04457         65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFEL-PENGERFEVIEADGAEYIAVHRHSTDVILVD  143 (262)
T ss_pred             CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCC-CCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence            345789999999999999998766778999999999999999875310 1112457778898643 34335789999986


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      +.
T Consensus       144 ~~  145 (262)
T PRK04457        144 GF  145 (262)
T ss_pred             CC
Confidence            53

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=98.68  E-value=8e-08  Score=84.80  Aligned_cols=91  Identities=14%  Similarity=0.024  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG  150 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~  150 (171)
                      ++++.+..+...+. + .+..+|||+|||+|..+..+++.. +.++|+++|+++++++.+++...   ..+. ++.++++
T Consensus       234 ~qd~~s~lv~~~l~-~-~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~---~~g~~~v~~~~~  308 (444)
T PRK14902        234 IQDESSMLVAPALD-P-KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAK---RLGLTNIETKAL  308 (444)
T ss_pred             EEChHHHHHHHHhC-C-CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEeC
Confidence            34444444433332 2 355789999999999999888643 45799999999999999987542   2333 4778889


Q ss_pred             cCCCCC--CCCCccceEEEec
Q 030823          151 DEEFLP--LKERYACRFFVLA  169 (171)
Q Consensus       151 D~e~LP--f~~~sfDlV~s~~  169 (171)
                      |...++  ++ ++||+|++.+
T Consensus       309 D~~~~~~~~~-~~fD~Vl~D~  328 (444)
T PRK14902        309 DARKVHEKFA-EKFDKILVDA  328 (444)
T ss_pred             Ccccccchhc-ccCCEEEEcC
Confidence            987764  43 7899999753

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=98.65  E-value=1.9e-07  Score=75.31  Aligned_cols=76  Identities=12%  Similarity=-0.051  Sum_probs=56.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh----------ccCCCceeEEEccCCCCCCCC-
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA----------HNDNIETCFVVGDEEFLPLKE-  159 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~----------~~~~~~~~~~~~D~e~LPf~~-  159 (171)
                      +..+|||+|||.|..+..|++++  .+|+|+|+|+..++.+.++..-.          .....++.+.++|...++..+ 
T Consensus        37 ~~~rvL~~gCG~G~da~~LA~~G--~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~  114 (218)
T PRK13255         37 AGSRVLVPLCGKSLDMLWLAEQG--HEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAADL  114 (218)
T ss_pred             CCCeEEEeCCCChHhHHHHHhCC--CeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCcccC
Confidence            44799999999999999999854  69999999999999874321000          001235778899998886443 


Q ss_pred             CccceEEEe
Q 030823          160 RYACRFFVL  168 (171)
Q Consensus       160 ~sfDlV~s~  168 (171)
                      +.||+|+-.
T Consensus       115 ~~fd~v~D~  123 (218)
T PRK13255        115 ADVDAVYDR  123 (218)
T ss_pred             CCeeEEEeh
Confidence            689999854

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=98.65  E-value=1.7e-07  Score=74.81  Aligned_cols=94  Identities=13%  Similarity=-0.041  Sum_probs=63.7

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV  148 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~  148 (171)
                      +.+..+.+.+.+.+.+... .+..+|||+|||+|.++..+..++ ..+|+++|.+++.++.+++...   ..+. ++.++
T Consensus        33 ~Rp~~d~v~e~l~~~l~~~-~~~~~vLDl~~GsG~l~l~~lsr~-a~~V~~vE~~~~a~~~a~~Nl~---~~~~~~v~~~  107 (199)
T PRK10909         33 LRPTTDRVRETLFNWLAPV-IVDARCLDCFAGSGALGLEALSRY-AAGATLLEMDRAVAQQLIKNLA---TLKAGNARVV  107 (199)
T ss_pred             cCcCCHHHHHHHHHHHhhh-cCCCEEEEcCCCccHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH---HhCCCcEEEE
Confidence            4445555555555544332 234689999999999998644333 4799999999999999876432   1222 57778


Q ss_pred             EccCCC-CCCCCCccceEEEe
Q 030823          149 VGDEEF-LPLKERYACRFFVL  168 (171)
Q Consensus       149 ~~D~e~-LPf~~~sfDlV~s~  168 (171)
                      ++|... ++...++||+|+++
T Consensus       108 ~~D~~~~l~~~~~~fDlV~~D  128 (199)
T PRK10909        108 NTNALSFLAQPGTPHNVVFVD  128 (199)
T ss_pred             EchHHHHHhhcCCCceEEEEC
Confidence            888754 33334579999985

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=98.65  E-value=1.7e-07  Score=78.61  Aligned_cols=74  Identities=8%  Similarity=0.033  Sum_probs=58.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++...   ..+.  ++.++.+|....++++  +|+|++
T Consensus       148 ~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~gl~~rv~~~~~d~~~~~~~~--~D~v~~  221 (306)
T TIGR02716       148 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EKGVADRMRGIAVDIYKESYPE--ADAVLF  221 (306)
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hCCccceEEEEecCccCCCCCC--CCEEEe
Confidence            3557999999999999999998777789999998 799999876432   2332  4788999987767653  699876


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       222 ~~  223 (306)
T TIGR02716       222 CR  223 (306)
T ss_pred             Eh
Confidence            54

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=98.64  E-value=1.5e-07  Score=82.66  Aligned_cols=87  Identities=11%  Similarity=0.123  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHhc-c-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823           77 VAENLLDRLEDC-R-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE  153 (171)
Q Consensus        77 va~~l~~rL~~i-~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e  153 (171)
                      .++.|.+++... . .+..+|||+|||+|.++..|++.  ..+|+++|++++|++.|++...   ..+. ++.++.+|.+
T Consensus       276 ~~~~l~~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~--~~~V~~vE~~~~av~~a~~n~~---~~~~~nv~~~~~d~~  350 (431)
T TIGR00479       276 QNEKLVDRALEALELQGEELVVDAYCGVGTFTLPLAKQ--AKSVVGIEVVPESVEKAQQNAE---LNGIANVEFLAGTLE  350 (431)
T ss_pred             HHHHHHHHHHHHhccCCCCEEEEcCCCcCHHHHHHHHh--CCEEEEEEcCHHHHHHHHHHHH---HhCCCceEEEeCCHH
Confidence            344444443332 1 34578999999999999999874  3699999999999999986432   1233 6888999976


Q ss_pred             C----CCCCCCccceEEEe
Q 030823          154 F----LPLKERYACRFFVL  168 (171)
Q Consensus       154 ~----LPf~~~sfDlV~s~  168 (171)
                      .    +++.+++||+|+..
T Consensus       351 ~~l~~~~~~~~~~D~vi~d  369 (431)
T TIGR00479       351 TVLPKQPWAGQIPDVLLLD  369 (431)
T ss_pred             HHHHHHHhcCCCCCEEEEC
Confidence            4    23556789999864

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=98.63  E-value=1e-07  Score=78.81  Aligned_cols=76  Identities=5%  Similarity=-0.094  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      ++..+|||+|||+|..+..++... +.+.|+++|+++.|++.+++...   ..+. ++.++.+|...++...+.||.|++
T Consensus        70 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~---~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~  146 (264)
T TIGR00446        70 DPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANIN---RCGVLNVAVTNFDGRVFGAAVPKFDAILL  146 (264)
T ss_pred             CCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH---HcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence            456899999999999998887643 34699999999999999987543   2333 567788898877766678999997


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus       147 D  147 (264)
T TIGR00446       147 D  147 (264)
T ss_pred             c
Confidence            4

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=98.62  E-value=1.6e-07  Score=83.07  Aligned_cols=74  Identities=12%  Similarity=0.043  Sum_probs=58.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|..+..+.+.. ..++|+++|+|++|++.+++...   ..++ ++.++++|+..++ ++++||+|++
T Consensus       249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~---~~g~~~v~~~~~Da~~~~-~~~~fD~Vl~  324 (445)
T PRK14904        249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHAS---ALGITIIETIEGDARSFS-PEEQPDAILL  324 (445)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH---HhCCCeEEEEeCcccccc-cCCCCCEEEE
Confidence            355799999999999888776532 34699999999999999987543   2343 4778899998876 5679999996

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=98.61  E-value=5.2e-07  Score=71.18  Aligned_cols=93  Identities=14%  Similarity=0.092  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEcc
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D  151 (171)
                      .-++++-...+..|.  .++.++++|||||||.++..++..++..+|+++|-++++++..++.+..  ....++..+.++
T Consensus        17 ~TK~EIRal~ls~L~--~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~--fg~~n~~vv~g~   92 (187)
T COG2242          17 MTKEEIRALTLSKLR--PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAAR--FGVDNLEVVEGD   92 (187)
T ss_pred             CcHHHHHHHHHHhhC--CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHH--hCCCcEEEEecc
Confidence            344455444445554  4677899999999999999998666889999999999999988764321  122256677888


Q ss_pred             CC-CCCCCCCccceEEEec
Q 030823          152 EE-FLPLKERYACRFFVLA  169 (171)
Q Consensus       152 ~e-~LPf~~~sfDlV~s~~  169 (171)
                      +- .|+- ..+||.|+...
T Consensus        93 Ap~~L~~-~~~~daiFIGG  110 (187)
T COG2242          93 APEALPD-LPSPDAIFIGG  110 (187)
T ss_pred             chHhhcC-CCCCCEEEECC
Confidence            64 4442 23899998753

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=98.61  E-value=1.7e-07  Score=79.08  Aligned_cols=77  Identities=16%  Similarity=0.022  Sum_probs=56.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ...+|||||||.|.++-.+..++ .+.|+|+|++...+.+......- ......+.++-.-.|.+|. .+.||+|+|.+|
T Consensus       115 ~gk~VLDIGC~nGY~~frM~~~G-A~~ViGiDP~~lf~~QF~~i~~~-lg~~~~~~~lplgvE~Lp~-~~~FDtVF~MGV  191 (315)
T PF08003_consen  115 KGKRVLDIGCNNGYYSFRMLGRG-AKSVIGIDPSPLFYLQFEAIKHF-LGQDPPVFELPLGVEDLPN-LGAFDTVFSMGV  191 (315)
T ss_pred             CCCEEEEecCCCcHHHHHHhhcC-CCEEEEECCChHHHHHHHHHHHH-hCCCccEEEcCcchhhccc-cCCcCEEEEeee
Confidence            45799999999999998888764 46899999999888775432211 1112223333357789997 899999999876

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PLN02672 methionine S-methyltransferase

Probab=98.59  E-value=2.1e-07  Score=89.67  Aligned_cols=76  Identities=12%  Similarity=-0.134  Sum_probs=56.4

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc------------cCC--CceeEEEccCCCCCCC
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH------------NDN--IETCFVVGDEEFLPLK  158 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~------------~~~--~~~~~~~~D~e~LPf~  158 (171)
                      .+|||+|||+|.++..++...+..+|+++|+|+++++.|++......            .+.  -++.++.+|.....-.
T Consensus       120 ~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~~~  199 (1082)
T PLN02672        120 KTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYCRD  199 (1082)
T ss_pred             CEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccccccccccEEEEECchhhhccc
Confidence            58999999999999999876666799999999999999976432100            001  1478899997543311


Q ss_pred             -CCccceEEEe
Q 030823          159 -ERYACRFFVL  168 (171)
Q Consensus       159 -~~sfDlV~s~  168 (171)
                       ...||+|+||
T Consensus       200 ~~~~fDlIVSN  210 (1082)
T PLN02672        200 NNIELDRIVGC  210 (1082)
T ss_pred             cCCceEEEEEC
Confidence             2369999997

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=5.5e-07  Score=72.29  Aligned_cols=86  Identities=15%  Similarity=0.099  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL  155 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L  155 (171)
                      +...|++.|.  .++.++|||||||+|..+..|++.  .++|+.+|..++..+.|++...   ..+. ++..+++|...=
T Consensus        60 ~vA~m~~~L~--~~~g~~VLEIGtGsGY~aAvla~l--~~~V~siEr~~~L~~~A~~~L~---~lg~~nV~v~~gDG~~G  132 (209)
T COG2518          60 MVARMLQLLE--LKPGDRVLEIGTGSGYQAAVLARL--VGRVVSIERIEELAEQARRNLE---TLGYENVTVRHGDGSKG  132 (209)
T ss_pred             HHHHHHHHhC--CCCCCeEEEECCCchHHHHHHHHH--hCeEEEEEEcHHHHHHHHHHHH---HcCCCceEEEECCcccC
Confidence            4455655554  357799999999999999999984  4699999999999999987543   2444 677888987533


Q ss_pred             CCCCCccceEEEec
Q 030823          156 PLKERYACRFFVLA  169 (171)
Q Consensus       156 Pf~~~sfDlV~s~~  169 (171)
                      =-+...||.|+.++
T Consensus       133 ~~~~aPyD~I~Vta  146 (209)
T COG2518         133 WPEEAPYDRIIVTA  146 (209)
T ss_pred             CCCCCCcCEEEEee
Confidence            22468999999875

>PRK01581 speE spermidine synthase; Validated

Probab=98.56  E-value=2.7e-07  Score=79.75  Aligned_cols=80  Identities=13%  Similarity=0.050  Sum_probs=60.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh----h-hccCCCceeEEEccCCC-CCCCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ----D-AHNDNIETCFVVGDEEF-LPLKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~----~-~~~~~~~~~~~~~D~e~-LPf~~~sfD  163 (171)
                      ....+||++|||+|..++.+.+..+..+|+++|++++|++.|++...    + ....+.++..+++|+.. ++-.++.||
T Consensus       149 ~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YD  228 (374)
T PRK01581        149 IDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYD  228 (374)
T ss_pred             CCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCcc
Confidence            44579999999999999888876667899999999999999985210    0 00123467778888764 455567899


Q ss_pred             eEEEec
Q 030823          164 RFFVLA  169 (171)
Q Consensus       164 lV~s~~  169 (171)
                      +|++..
T Consensus       229 VIIvDl  234 (374)
T PRK01581        229 VIIIDF  234 (374)
T ss_pred             EEEEcC
Confidence            999864

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=98.55  E-value=2.9e-07  Score=79.77  Aligned_cols=73  Identities=10%  Similarity=0.001  Sum_probs=55.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC-CCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL-KERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf-~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..++..  ..+|+|+|+++.+++.+++...   ..++ ++.|+.+|.+.+.. ..+.||+|+.+
T Consensus       233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~---~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D  307 (374)
T TIGR02085       233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQ---MLGLDNLSFAALDSAKFATAQMSAPELVLVN  307 (374)
T ss_pred             CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence            3468999999999999999863  4799999999999999986432   2333 68889999865431 22469999864

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>PRK04148 hypothetical protein; Provisional

Probab=98.54  E-value=7.8e-07  Score=66.88  Aligned_cols=80  Identities=19%  Similarity=0.168  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~  154 (171)
                      .+++.+.+.+..  .+..++||||||+|. ++..|.+.+  ..|+++|++++.++.+++.       +  +..+++|...
T Consensus         3 ~i~~~l~~~~~~--~~~~kileIG~GfG~~vA~~L~~~G--~~ViaIDi~~~aV~~a~~~-------~--~~~v~dDlf~   69 (134)
T PRK04148          3 TIAEFIAENYEK--GKNKKIVELGIGFYFKVAKKLKESG--FDVIVIDINEKAVEKAKKL-------G--LNAFVDDLFN   69 (134)
T ss_pred             HHHHHHHHhccc--ccCCEEEEEEecCCHHHHHHHHHCC--CEEEEEECCHHHHHHHHHh-------C--CeEEECcCCC
Confidence            455555555432  234789999999995 898998743  6999999999999988652       2  4568888877


Q ss_pred             CCCC-CCccceEEEe
Q 030823          155 LPLK-ERYACRFFVL  168 (171)
Q Consensus       155 LPf~-~~sfDlV~s~  168 (171)
                      -++. =+.+|+|.|.
T Consensus        70 p~~~~y~~a~liysi   84 (134)
T PRK04148         70 PNLEIYKNAKLIYSI   84 (134)
T ss_pred             CCHHHHhcCCEEEEe
Confidence            6654 4788999875

>PRK03612 spermidine synthase; Provisional

Probab=98.47  E-value=7.4e-07  Score=80.38  Aligned_cols=80  Identities=18%  Similarity=0.092  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh--hhc---cCCCceeEEEccCCC-CCCCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ--DAH---NDNIETCFVVGDEEF-LPLKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~--~~~---~~~~~~~~~~~D~e~-LPf~~~sfD  163 (171)
                      ++..+|||+|||+|.+++.+.+.....+|+++|++++|++.+++...  ...   ..+.++.++++|... +.-.+++||
T Consensus       296 ~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD  375 (521)
T PRK03612        296 ARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD  375 (521)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence            35679999999999999998875445899999999999999987210  000   123457778898765 333457999


Q ss_pred             eEEEec
Q 030823          164 RFFVLA  169 (171)
Q Consensus       164 lV~s~~  169 (171)
                      +|++..
T Consensus       376 vIi~D~  381 (521)
T PRK03612        376 VIIVDL  381 (521)
T ss_pred             EEEEeC
Confidence            999874

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=98.47  E-value=6.8e-07  Score=76.19  Aligned_cols=76  Identities=11%  Similarity=-0.013  Sum_probs=54.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE-ccCCCCC----CCCCccc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV-GDEEFLP----LKERYAC  163 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~-~D~e~LP----f~~~sfD  163 (171)
                      ...++||||||+|.+...|..+.+..+++|+|+++.+++.|++....  +++.  .+.+.. .+...+.    .+++.||
T Consensus       114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~--Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fD  191 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISA--NPGLNGAIRLRLQKDSKAIFKGIIHKNERFD  191 (321)
T ss_pred             CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHh--ccCCcCcEEEEEccchhhhhhcccccCCceE
Confidence            45789999999998888887655567999999999999999875431  2223  344432 3333222    2467999


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|+||
T Consensus       192 livcN  196 (321)
T PRK11727        192 ATLCN  196 (321)
T ss_pred             EEEeC
Confidence            99997

>PLN02366 spermidine synthase

Probab=98.43  E-value=1.7e-06  Score=73.37  Aligned_cols=80  Identities=16%  Similarity=0.147  Sum_probs=60.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-C-CCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-P-LKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-P-f~~~sfDlV  165 (171)
                      .+..+||+||||+|.+.+.+.+..+..+|+.+|++++|++.+++.....  ...+.++.++++|+... . .+++.||+|
T Consensus        90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI  169 (308)
T PLN02366         90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI  169 (308)
T ss_pred             CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence            4568999999999999999987656789999999999999998743210  01234677888996432 1 236789999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++-+
T Consensus       170 i~D~  173 (308)
T PLN02366        170 IVDS  173 (308)
T ss_pred             EEcC
Confidence            9854

>TIGR00478 tly hemolysin TlyA family protein

Probab=98.40  E-value=2.6e-06  Score=69.33  Aligned_cols=39  Identities=18%  Similarity=0.214  Sum_probs=34.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL  130 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~  130 (171)
                      +..++||+|||||.++..+.+. +..+|+++|++++|+..
T Consensus        75 ~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~  113 (228)
T TIGR00478        75 KNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAE  113 (228)
T ss_pred             CCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHH
Confidence            4568999999999999999885 35799999999998876

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=98.39  E-value=3.3e-06  Score=70.39  Aligned_cols=95  Identities=19%  Similarity=0.131  Sum_probs=62.8

Q ss_pred             HHHHHHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE--
Q 030823           73 FVDAVAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV--  149 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~--  149 (171)
                      -.++.++.+++.+.... .....+||+|||+|.++..+....+...|+++|.|+..+..|.+........+ .+..+.  
T Consensus       129 ETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g-~i~v~~~~  207 (328)
T KOG2904|consen  129 ETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSG-RIEVIHNI  207 (328)
T ss_pred             cHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcC-ceEEEecc
Confidence            34555555555544321 23458999999999999999876677899999999999999876443111111 111121  


Q ss_pred             --ccC-CCCCCCCCccceEEEe
Q 030823          150 --GDE-EFLPLKERYACRFFVL  168 (171)
Q Consensus       150 --~D~-e~LPf~~~sfDlV~s~  168 (171)
                        .|. +..|..++..|+++||
T Consensus       208 me~d~~~~~~l~~~~~dllvsN  229 (328)
T KOG2904|consen  208 MESDASDEHPLLEGKIDLLVSN  229 (328)
T ss_pred             cccccccccccccCceeEEecC
Confidence              221 2445678999999997

>PRK13256 thiopurine S-methyltransferase; Reviewed

Probab=98.37  E-value=2.9e-06  Score=69.01  Aligned_cols=76  Identities=12%  Similarity=-0.054  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh----------hhccCCCceeEEEccCCCCCCCC-
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ----------DAHNDNIETCFVVGDEEFLPLKE-  159 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~----------~~~~~~~~~~~~~~D~e~LPf~~-  159 (171)
                      +..+||+.|||.|.-...|+..+  -+|+|+|+|+..++.+.+...          .....+..+.++++|...++... 
T Consensus        43 ~~~rvLvPgCGkg~D~~~LA~~G--~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~  120 (226)
T PRK13256         43 DSSVCLIPMCGCSIDMLFFLSKG--VKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN  120 (226)
T ss_pred             CCCeEEEeCCCChHHHHHHHhCC--CcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence            45799999999999999999854  689999999999999754210          00012346889999999987422 


Q ss_pred             --CccceEEEe
Q 030823          160 --RYACRFFVL  168 (171)
Q Consensus       160 --~sfDlV~s~  168 (171)
                        +.||+|+-.
T Consensus       121 ~~~~fD~VyDr  131 (226)
T PRK13256        121 NLPVFDIWYDR  131 (226)
T ss_pred             ccCCcCeeeee
Confidence              689998743

>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase

Probab=98.37  E-value=1.8e-06  Score=67.59  Aligned_cols=95  Identities=16%  Similarity=0.083  Sum_probs=64.1

Q ss_pred             CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-Cc--------EEEEEeCCHHHHHHHHHhhhhhc
Q 030823           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IE--------KLIMMDTSYDMLKLCKDAQQDAH  139 (171)
Q Consensus        69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-~~--------~v~gvD~S~~mL~~a~~~~~~~~  139 (171)
                      ....+...+|..|+. +..+ ++...+||--||+|.+...-+.... ..        +++|+|++++++..+++...   
T Consensus         8 ~~a~L~~~lA~~ll~-la~~-~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~---   82 (179)
T PF01170_consen    8 GPAPLRPTLAAALLN-LAGW-RPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLK---   82 (179)
T ss_dssp             SSTSS-HHHHHHHHH-HTT---TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHH---
T ss_pred             CCCCCCHHHHHHHHH-HhCC-CCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHH---
Confidence            356677777777764 3333 3557899999999999865532111 12        49999999999999987543   


Q ss_pred             cCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823          140 NDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       140 ~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+.  .+.+...|...+|+.++++|+|+++
T Consensus        83 ~ag~~~~i~~~~~D~~~l~~~~~~~d~Ivtn  113 (179)
T PF01170_consen   83 AAGVEDYIDFIQWDARELPLPDGSVDAIVTN  113 (179)
T ss_dssp             HTT-CGGEEEEE--GGGGGGTTSBSCEEEEE
T ss_pred             hcccCCceEEEecchhhcccccCCCCEEEEC
Confidence            2333  4678889999999889999999986

It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=98.36  E-value=1.4e-06  Score=66.56  Aligned_cols=89  Identities=12%  Similarity=0.023  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHhcc--cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823           76 AVAENLLDRLEDCR--KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (171)
Q Consensus        76 ~va~~l~~rL~~i~--~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e  153 (171)
                      .+|.-|..-+...-  -...+++|+|||.|.+.....- +....|+|+|+.++.|+.+.+..   ..-.+++.++++|.-
T Consensus        31 ~iAasM~~~Ih~TygdiEgkkl~DLgcgcGmLs~a~sm-~~~e~vlGfDIdpeALEIf~rNa---eEfEvqidlLqcdil  106 (185)
T KOG3420|consen   31 HIAASMLYTIHNTYGDIEGKKLKDLGCGCGMLSIAFSM-PKNESVLGFDIDPEALEIFTRNA---EEFEVQIDLLQCDIL  106 (185)
T ss_pred             HHHHHHHHHHHhhhccccCcchhhhcCchhhhHHHhhc-CCCceEEeeecCHHHHHHHhhch---HHhhhhhheeeeecc
Confidence            44444544444321  2457899999999999866553 34579999999999999987532   123456778999998


Q ss_pred             CCCCCCCccceEEEe
Q 030823          154 FLPLKERYACRFFVL  168 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~  168 (171)
                      .+-+..+.||.++.|
T Consensus       107 dle~~~g~fDtaviN  121 (185)
T KOG3420|consen  107 DLELKGGIFDTAVIN  121 (185)
T ss_pred             chhccCCeEeeEEec
Confidence            888888999998875

>TIGR00417 speE spermidine synthase

Probab=98.36  E-value=2.7e-06  Score=70.48  Aligned_cols=79  Identities=19%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-LPf~~~sfDlV~s  167 (171)
                      ...+||+||||+|.++..+.+..+..+++++|++++|++.+++......  ....++.++.+|... +.-.++.||+|++
T Consensus        72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~  151 (270)
T TIGR00417        72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV  151 (270)
T ss_pred             CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence            4569999999999999888775556799999999999999987431100  112345667777543 3333579999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       152 D~  153 (270)
T TIGR00417       152 DS  153 (270)
T ss_pred             eC
Confidence            54

the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=98.35  E-value=1.8e-06  Score=75.52  Aligned_cols=74  Identities=14%  Similarity=0.039  Sum_probs=55.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCCC--C--CCCccc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFLP--L--KERYAC  163 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~LP--f--~~~sfD  163 (171)
                      +..+|||+|||||.++...... +..+|+++|+|+.+++.+++...   ..++   ++.++.+|.....  +  ..++||
T Consensus       220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~---~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fD  295 (396)
T PRK15128        220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVE---LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_pred             CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHH---HcCCCCCcEEEEEccHHHHHHHHHhcCCCCC
Confidence            3578999999999998765542 34699999999999999987432   2232   4778899976542  2  356899


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|+++
T Consensus       296 lVilD  300 (396)
T PRK15128        296 VIVMD  300 (396)
T ss_pred             EEEEC
Confidence            99986

>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2

Probab=98.35  E-value=2.2e-06  Score=68.09  Aligned_cols=77  Identities=14%  Similarity=0.084  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CC--CCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LP--LKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LP--f~~~sfDlV~s  167 (171)
                      ..+.+||||||.|.+...++...+...++|+|++...+..+.++...  ..-.++.++.+|+.. ++  ++++++|-|+.
T Consensus        17 ~~~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~--~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i   94 (195)
T PF02390_consen   17 DNPLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEK--RGLKNVRFLRGDARELLRRLFPPGSVDRIYI   94 (195)
T ss_dssp             CCEEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHH--HTTSSEEEEES-CTTHHHHHSTTTSEEEEEE
T ss_pred             CCCeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHh--hcccceEEEEccHHHHHhhcccCCchheEEE
Confidence            34589999999999999999888889999999999999988765431  122378889999887 33  56799999987


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus        95 ~F   96 (195)
T PF02390_consen   95 NF   96 (195)
T ss_dssp             ES
T ss_pred             eC
Confidence            64

1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=98.33  E-value=1.8e-06  Score=74.59  Aligned_cols=73  Identities=14%  Similarity=0.063  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHhcc-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           77 VAENLLDRLEDCR-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      +++.|.+.+.... ....++||++||+|.++..|++.  ..+|+++|.++.|++.+++...   ..++ ++.++.+|.+.
T Consensus       191 ~~e~l~~~v~~~~~~~~~~vLDl~~G~G~~sl~la~~--~~~v~~vE~~~~ai~~a~~N~~---~~~~~~v~~~~~d~~~  265 (362)
T PRK05031        191 VNEKMLEWALDATKGSKGDLLELYCGNGNFTLALARN--FRRVLATEISKPSVAAAQYNIA---ANGIDNVQIIRMSAEE  265 (362)
T ss_pred             HHHHHHHHHHHHhhcCCCeEEEEeccccHHHHHHHhh--CCEEEEEECCHHHHHHHHHHHH---HhCCCcEEEEECCHHH
Confidence            4455555444322 12257999999999999999874  4699999999999999986432   2333 67889998765

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=98.32  E-value=1.8e-06  Score=74.38  Aligned_cols=73  Identities=11%  Similarity=0.050  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHhccc-CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~-~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      .++.|.+.+..... ...++||+|||+|.++..|++.  ..+|+++|++++|++.+++...   ..++ ++.++.+|.+.
T Consensus       182 ~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~--~~~v~~vE~~~~av~~a~~n~~---~~~~~~v~~~~~d~~~  256 (353)
T TIGR02143       182 VNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQN--FRRVLATEIAKPSVNAAQYNIA---ANNIDNVQIIRMSAEE  256 (353)
T ss_pred             HHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEEcCHHH
Confidence            34444444333222 2247999999999999999874  3699999999999999987432   2333 57788888765

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=98.30  E-value=2.8e-06  Score=79.17  Aligned_cols=73  Identities=11%  Similarity=-0.048  Sum_probs=56.2

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCC-CCCCCccceEEE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFL-PLKERYACRFFV  167 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~L-Pf~~~sfDlV~s  167 (171)
                      ..+|||+|||||.++..++.. +..+|+++|+|+.+++.+++...   ..+.   ++.++++|.... .-..++||+|++
T Consensus       539 g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~---~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIil  614 (702)
T PRK11783        539 GKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFA---LNGLSGRQHRLIQADCLAWLKEAREQFDLIFI  614 (702)
T ss_pred             CCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH---HhCCCccceEEEEccHHHHHHHcCCCcCEEEE
Confidence            578999999999999999874 34589999999999999987542   1222   478899996532 212578999998


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus       615 D  615 (702)
T PRK11783        615 D  615 (702)
T ss_pred             C
Confidence            5

>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]

Probab=98.28  E-value=5.7e-06  Score=68.56  Aligned_cols=72  Identities=13%  Similarity=0.120  Sum_probs=59.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCC-ccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKER-YACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~-sfDlV~s~  168 (171)
                      +.+.|||||+|.|.++..|.++.  .+|+++++.+.|+...++..    ....++..+.+|+-..+|+.- .++.|++|
T Consensus        30 ~~d~VlEIGpG~GaLT~~Ll~~~--~~v~aiEiD~~l~~~L~~~~----~~~~n~~vi~~DaLk~d~~~l~~~~~vVaN  102 (259)
T COG0030          30 PGDNVLEIGPGLGALTEPLLERA--ARVTAIEIDRRLAEVLKERF----APYDNLTVINGDALKFDFPSLAQPYKVVAN  102 (259)
T ss_pred             CCCeEEEECCCCCHHHHHHHhhc--CeEEEEEeCHHHHHHHHHhc----ccccceEEEeCchhcCcchhhcCCCEEEEc
Confidence            36899999999999999999854  78999999999999988743    134467778999998888654 67888876

>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes

Probab=98.27  E-value=5.2e-06  Score=71.08  Aligned_cols=76  Identities=13%  Similarity=0.092  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc----C----CCceeEEEccCCCC------
Q 030823           91 TFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN----D----NIETCFVVGDEEFL------  155 (171)
Q Consensus        91 ~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~----~----~~~~~~~~~D~e~L------  155 (171)
                      +..+|||||||-|. +......  ++..++|+|+|.+.|+.|+++......    .    .....|+++|...-      
T Consensus        62 ~~~~VLDl~CGkGGDL~Kw~~~--~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~  139 (331)
T PF03291_consen   62 PGLTVLDLCCGKGGDLQKWQKA--KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKL  139 (331)
T ss_dssp             TT-EEEEET-TTTTTHHHHHHT--T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTS
T ss_pred             CCCeEEEecCCCchhHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhc
Confidence            67899999999654 5555443  679999999999999999887621110    1    12456788876533      


Q ss_pred             CCCCCccceEEEe
Q 030823          156 PLKERYACRFFVL  168 (171)
Q Consensus       156 Pf~~~sfDlV~s~  168 (171)
                      +.+...||+|.+-
T Consensus       140 ~~~~~~FDvVScQ  152 (331)
T PF03291_consen  140 PPRSRKFDVVSCQ  152 (331)
T ss_dssp             SSTTS-EEEEEEE
T ss_pred             cccCCCcceeehH
Confidence            3333599999863

The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=98.27  E-value=3.9e-06  Score=68.35  Aligned_cols=76  Identities=11%  Similarity=-0.050  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-C-----CCCCc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-P-----LKERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-P-----f~~~s  161 (171)
                      +..+|||+|||+|..+..++.. .+.++|+++|.++++++.|++...   ..+.  .+.++.+|+... +     .++++
T Consensus        68 ~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~---~~gl~~~i~~~~gda~~~L~~l~~~~~~~~  144 (234)
T PLN02781         68 NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIK---KAGVDHKINFIQSDALSALDQLLNNDPKPE  144 (234)
T ss_pred             CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEccHHHHHHHHHhCCCCCC
Confidence            4579999999999988777653 245799999999999999987543   2333  477888887543 2     12579


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|+..+
T Consensus       145 fD~VfiDa  152 (234)
T PLN02781        145 FDFAFVDA  152 (234)
T ss_pred             CCEEEECC
Confidence            99999764

>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional

Probab=98.21  E-value=4.5e-06  Score=70.45  Aligned_cols=74  Identities=20%  Similarity=0.063  Sum_probs=57.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCCC--ccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKER--YACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~~--sfDl  164 (171)
                      .+...++|.+||.|..+..+++..+ .++|+|+|.+++|++.+++...    ..-++.++.++...++  ++++  ++|.
T Consensus        18 ~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~----~~~ri~~i~~~f~~l~~~l~~~~~~vDg   93 (296)
T PRK00050         18 KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLK----PFGRFTLVHGNFSNLKEVLAEGLGKVDG   93 (296)
T ss_pred             CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhc----cCCcEEEEeCCHHHHHHHHHcCCCccCE
Confidence            4557999999999999999988653 5799999999999999987542    1235778888877664  2222  7998


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus        94 Il~   96 (296)
T PRK00050         94 ILL   96 (296)
T ss_pred             EEE
Confidence            875

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=98.20  E-value=1.5e-05  Score=65.73  Aligned_cols=94  Identities=21%  Similarity=0.161  Sum_probs=69.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      ++|+=-.-..+++.+++.+..  .+...|||+|+|+|.++..|.+.+  .+++++|.++.+.+..++..    ....++.
T Consensus         8 ~gQnFL~~~~~~~~Iv~~~~~--~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~----~~~~~~~   79 (262)
T PF00398_consen    8 LGQNFLVDPNIADKIVDALDL--SEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERF----ASNPNVE   79 (262)
T ss_dssp             CTSSEEEHHHHHHHHHHHHTC--GTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHC----TTCSSEE
T ss_pred             CCcCeeCCHHHHHHHHHhcCC--CCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHh----hhcccce
Confidence            455533346667777776542  256899999999999999999855  89999999999999988743    1345678


Q ss_pred             EEEccCCCCCCCC---CccceEEEe
Q 030823          147 FVVGDEEFLPLKE---RYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e~LPf~~---~sfDlV~s~  168 (171)
                      .+.+|...+...+   +...+|++|
T Consensus        80 vi~~D~l~~~~~~~~~~~~~~vv~N  104 (262)
T PF00398_consen   80 VINGDFLKWDLYDLLKNQPLLVVGN  104 (262)
T ss_dssp             EEES-TTTSCGGGHCSSSEEEEEEE
T ss_pred             eeecchhccccHHhhcCCceEEEEE
Confidence            8999998888765   455566654

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]

Probab=98.17  E-value=1.2e-05  Score=67.10  Aligned_cols=86  Identities=13%  Similarity=0.016  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L  155 (171)
                      .++..+++.-  -.++.+.||++|.|||+++..|.+.  .++|+++++.+.|+....++-.+ .........+++|.-..
T Consensus        45 ~v~~~I~~ka--~~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~g-tp~~~kLqV~~gD~lK~  119 (315)
T KOG0820|consen   45 LVIDQIVEKA--DLKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQG-TPKSGKLQVLHGDFLKT  119 (315)
T ss_pred             HHHHHHHhcc--CCCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcC-CCccceeeEEecccccC
Confidence            4445554432  2367799999999999999999984  48999999999999998764321 00012355677887766


Q ss_pred             CCCCCccceEEEe
Q 030823          156 PLKERYACRFFVL  168 (171)
Q Consensus       156 Pf~~~sfDlV~s~  168 (171)
                      ++  -.||.+++|
T Consensus       120 d~--P~fd~cVsN  130 (315)
T KOG0820|consen  120 DL--PRFDGCVSN  130 (315)
T ss_pred             CC--cccceeecc
Confidence            65  489998885

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=98.12  E-value=8.1e-06  Score=69.82  Aligned_cols=75  Identities=13%  Similarity=0.042  Sum_probs=56.2

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ...|||+|||||.++..-++.+ ..+|+++|-|.-+ +.|.+.... +....-++.+.+..|.+-+|.+.+|+|+|=+
T Consensus        61 dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia-~~a~~iv~~-N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW  135 (346)
T KOG1499|consen   61 DKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIA-DFARKIVKD-NGLEDVITVIKGKVEDIELPVEKVDIIVSEW  135 (346)
T ss_pred             CCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHH-HHHHHHHHh-cCccceEEEeecceEEEecCccceeEEeehh
Confidence            4789999999999998888765 5799999998644 777664421 1122236778888887777689999999854

>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes

Probab=98.11  E-value=1.5e-05  Score=64.39  Aligned_cols=77  Identities=14%  Similarity=0.014  Sum_probs=54.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh-hcc---------CCCceeEEEccCCCCCCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD-AHN---------DNIETCFVVGDEEFLPLKE  159 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~-~~~---------~~~~~~~~~~D~e~LPf~~  159 (171)
                      .+..+||+.|||.|.-...|+.++  -+|+|+|+|+..++.+.+.... ...         ...++.++++|.-.++-..
T Consensus        36 ~~~~rvLvPgCG~g~D~~~La~~G--~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~  113 (218)
T PF05724_consen   36 KPGGRVLVPGCGKGYDMLWLAEQG--HDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPED  113 (218)
T ss_dssp             STSEEEEETTTTTSCHHHHHHHTT--EEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGSC
T ss_pred             CCCCeEEEeCCCChHHHHHHHHCC--CeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChhh
Confidence            344699999999999999999854  6999999999999998442210 000         1124678899998887544


Q ss_pred             -CccceEEEe
Q 030823          160 -RYACRFFVL  168 (171)
Q Consensus       160 -~sfDlV~s~  168 (171)
                       +.||+|+=.
T Consensus       114 ~g~fD~iyDr  123 (218)
T PF05724_consen  114 VGKFDLIYDR  123 (218)
T ss_dssp             HHSEEEEEEC
T ss_pred             cCCceEEEEe
Confidence             579999743

Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=98.03  E-value=3.2e-05  Score=68.70  Aligned_cols=108  Identities=13%  Similarity=0.126  Sum_probs=64.0

Q ss_pred             ccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhccc--CCCeEEEEcCCCcHHHHHHhhc----CCCcEEEE
Q 030823           47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRK--TFPTALCLGGSLEAVRRLLRGR----GGIEKLIM  120 (171)
Q Consensus        47 ~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~--~~~~vLDlGcGtG~l~~~L~~~----~~~~~v~g  120 (171)
                      .+++|.+...+++...            +.+.+.+.|+...-..  ....|||+|||+|-+.....+.    +...+|++
T Consensus       152 tYe~fE~D~vKY~~Ye------------~AI~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyA  219 (448)
T PF05185_consen  152 TYEVFEKDPVKYDQYE------------RAIEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYA  219 (448)
T ss_dssp             HHHHHCC-HHHHHHHH------------HHHHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEE
T ss_pred             cHhhHhcCHHHHHHHH------------HHHHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEE
Confidence            3456666555554332            2344455555432211  2467999999999998655442    23469999


Q ss_pred             EeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823          121 MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       121 vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++-++......++.... ..-+-.++.+.+|++.+..+ +.+|+|||=
T Consensus       220 VEkn~~A~~~l~~~v~~-n~w~~~V~vi~~d~r~v~lp-ekvDIIVSE  265 (448)
T PF05185_consen  220 VEKNPNAVVTLQKRVNA-NGWGDKVTVIHGDMREVELP-EKVDIIVSE  265 (448)
T ss_dssp             EESSTHHHHHHHHHHHH-TTTTTTEEEEES-TTTSCHS-S-EEEEEE-
T ss_pred             EcCCHhHHHHHHHHHHh-cCCCCeEEEEeCcccCCCCC-CceeEEEEe
Confidence            99998777665443110 11223588899999999874 599999984

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=98.03  E-value=7.4e-05  Score=59.89  Aligned_cols=91  Identities=16%  Similarity=0.120  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEc
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVG  150 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~  150 (171)
                      -...+. ++..|.... +..+||+|||++|.-+..+++.. +.++|+.+|+++++.+.|++...   ..+.  .+.++.+
T Consensus        30 ~~~~g~-lL~~l~~~~-~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~---~ag~~~~I~~~~g  104 (205)
T PF01596_consen   30 SPETGQ-LLQMLVRLT-RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFR---KAGLDDRIEVIEG  104 (205)
T ss_dssp             HHHHHH-HHHHHHHHH-T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHH---HTTGGGGEEEEES
T ss_pred             CHHHHH-HHHHHHHhc-CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHH---hcCCCCcEEEEEe
Confidence            334443 334444333 44799999999999999998643 35899999999999999987543   2333  5788888


Q ss_pred             cCCC-CC-C----CCCccceEEEec
Q 030823          151 DEEF-LP-L----KERYACRFFVLA  169 (171)
Q Consensus       151 D~e~-LP-f----~~~sfDlV~s~~  169 (171)
                      |+.. +| +    +.+.||+|+.-+
T Consensus       105 da~~~l~~l~~~~~~~~fD~VFiDa  129 (205)
T PF01596_consen  105 DALEVLPELANDGEEGQFDFVFIDA  129 (205)
T ss_dssp             -HHHHHHHHHHTTTTTSEEEEEEES
T ss_pred             ccHhhHHHHHhccCCCceeEEEEcc
Confidence            8643 33 1    246899999754

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>KOG2899 consensus Predicted methyltransferase [General function prediction only]

Probab=98.01  E-value=1.9e-05  Score=64.93  Aligned_cols=44  Identities=11%  Similarity=0.085  Sum_probs=39.8

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      +..+|||||..|.++..+++.+....|+|+|+.+..++.|++.+
T Consensus        59 ~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~  102 (288)
T KOG2899|consen   59 PKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEI  102 (288)
T ss_pred             cceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhc
Confidence            46799999999999999998777789999999999999998765

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=98.01  E-value=3.2e-05  Score=66.64  Aligned_cols=75  Identities=16%  Similarity=0.160  Sum_probs=49.3

Q ss_pred             HHHHHHHHHHHh-cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC
Q 030823           76 AVAENLLDRLED-CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE  153 (171)
Q Consensus        76 ~va~~l~~rL~~-i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e  153 (171)
                      .+++.|.+...+ +......+||+-||.|.++..|+.  ...+|+|+|.++++++.|++...   ..++ ++.|+.++.+
T Consensus       180 ~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~--~~~~V~gvE~~~~av~~A~~Na~---~N~i~n~~f~~~~~~  254 (352)
T PF05958_consen  180 EQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAK--KAKKVIGVEIVEEAVEDARENAK---LNGIDNVEFIRGDAE  254 (352)
T ss_dssp             HHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHC--CSSEEEEEES-HHHHHHHHHHHH---HTT--SEEEEE--SH
T ss_pred             HHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHh--hCCeEEEeeCCHHHHHHHHHHHH---HcCCCcceEEEeecc
Confidence            344444443333 223334899999999999999998  45899999999999999986432   2344 6888887765


Q ss_pred             CC
Q 030823          154 FL  155 (171)
Q Consensus       154 ~L  155 (171)
                      .+
T Consensus       255 ~~  256 (352)
T PF05958_consen  255 DF  256 (352)
T ss_dssp             HC
T ss_pred             ch
Confidence            43

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]

Probab=97.98  E-value=1.6e-05  Score=64.68  Aligned_cols=74  Identities=7%  Similarity=0.083  Sum_probs=61.1

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP---f~~~sfDlV~s~  168 (171)
                      +.+||||||.|.+...+++..|...++|||+....+..+-++..   ..++ ++..+++|+..+-   ++++++|-|+.+
T Consensus        50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~---~~~l~Nlri~~~DA~~~l~~~~~~~sl~~I~i~  126 (227)
T COG0220          50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIK---ELGLKNLRLLCGDAVEVLDYLIPDGSLDKIYIN  126 (227)
T ss_pred             cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHH---HcCCCcEEEEcCCHHHHHHhcCCCCCeeEEEEE
Confidence            68999999999999999988888899999999988888766543   4667 8888999987552   355699999877


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       127 F  127 (227)
T COG0220         127 F  127 (227)
T ss_pred             C
Confidence            4

>TIGR00095 RNA methyltransferase, RsmD family

Probab=97.95  E-value=8e-05  Score=58.77  Aligned_cols=72  Identities=11%  Similarity=0.012  Sum_probs=51.8

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC-C-CCC-ccceE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP-L-KER-YACRF  165 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LP-f-~~~-sfDlV  165 (171)
                      ..++||++||+|.++..+..++ ..+|+++|.++.+++.+++...   ..+.  ++.++.+|... +. + ..+ .||+|
T Consensus        50 g~~vLDLfaGsG~lglea~srg-a~~v~~vE~~~~a~~~~~~N~~---~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv  125 (189)
T TIGR00095        50 GAHLLDVFAGSGLLGEEALSRG-AKVAFLEEDDRKANQTLKENLA---LLKSGEQAEVVRNSALRALKFLAKKPTFDNVI  125 (189)
T ss_pred             CCEEEEecCCCcHHHHHHHhCC-CCEEEEEeCCHHHHHHHHHHHH---HhCCcccEEEEehhHHHHHHHhhccCCCceEE
Confidence            4789999999999999998765 3589999999999998876432   1222  36678888733 32 2 223 47777


Q ss_pred             EE
Q 030823          166 FV  167 (171)
Q Consensus       166 ~s  167 (171)
                      +.
T Consensus       126 ~~  127 (189)
T TIGR00095       126 YL  127 (189)
T ss_pred             EE
Confidence            64

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.93  E-value=4.7e-05  Score=61.55  Aligned_cols=69  Identities=20%  Similarity=0.184  Sum_probs=54.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|+|||+|+|.++..+.+.+|.-+++.+|+ |++++.+++        ...+.++.+|.. -|+|.  +|+|+...
T Consensus        99 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~--------~~rv~~~~gd~f-~~~P~--~D~~~l~~  166 (241)
T PF00891_consen   99 SGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE--------ADRVEFVPGDFF-DPLPV--ADVYLLRH  166 (241)
T ss_dssp             TTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH--------TTTEEEEES-TT-TCCSS--ESEEEEES
T ss_pred             cCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc--------ccccccccccHH-hhhcc--ccceeeeh
Confidence            3557899999999999999998888889999999 889988875        235888999987 66655  99998765


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       167 v  167 (241)
T PF00891_consen  167 V  167 (241)
T ss_dssp             S
T ss_pred             h
Confidence            3

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....

>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.93  E-value=6.6e-05  Score=66.45  Aligned_cols=72  Identities=15%  Similarity=0.108  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC---CCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK---ERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~---~~sfDlV~  166 (171)
                      +.+++||+=||.|.++..|++  ...+|+|+|+++++++.|++...   ..++ ++.|+.+++|.+...   ...+|+|+
T Consensus       293 ~~~~vlDlYCGvG~f~l~lA~--~~~~V~gvEi~~~aV~~A~~NA~---~n~i~N~~f~~~~ae~~~~~~~~~~~~d~Vv  367 (432)
T COG2265         293 GGERVLDLYCGVGTFGLPLAK--RVKKVHGVEISPEAVEAAQENAA---ANGIDNVEFIAGDAEEFTPAWWEGYKPDVVV  367 (432)
T ss_pred             CCCEEEEeccCCChhhhhhcc--cCCEEEEEecCHHHHHHHHHHHH---HcCCCcEEEEeCCHHHHhhhccccCCCCEEE
Confidence            557899999999999999997  56899999999999999987442   3444 689999999877644   35889987


Q ss_pred             E
Q 030823          167 V  167 (171)
Q Consensus       167 s  167 (171)
                      .
T Consensus       368 v  368 (432)
T COG2265         368 V  368 (432)
T ss_pred             E
Confidence            5

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=97.93  E-value=2.4e-05  Score=64.80  Aligned_cols=66  Identities=15%  Similarity=-0.024  Sum_probs=51.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ...++||||+|.|.++..+++.  ..+|++.|.|+.|..+.++       ++.    .+.+...+.-.+..||+|.|.-
T Consensus        94 ~~~~lLDlGAGdG~VT~~l~~~--f~~v~aTE~S~~Mr~rL~~-------kg~----~vl~~~~w~~~~~~fDvIscLN  159 (265)
T PF05219_consen   94 KDKSLLDLGAGDGEVTERLAPL--FKEVYATEASPPMRWRLSK-------KGF----TVLDIDDWQQTDFKFDVISCLN  159 (265)
T ss_pred             cCCceEEecCCCcHHHHHHHhh--cceEEeecCCHHHHHHHHh-------CCC----eEEehhhhhccCCceEEEeehh
Confidence            4578999999999999999984  4799999999999999875       332    3344444544567899998864

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PLN02823 spermine synthase

Probab=97.91  E-value=6.2e-05  Score=64.62  Aligned_cols=78  Identities=14%  Similarity=0.187  Sum_probs=59.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s  167 (171)
                      ...+||.||+|.|.+++.+.+..+..+|+++|+++++++.+++.....  ...+.++..+++|+.. +.-.+++||+|++
T Consensus       103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~  182 (336)
T PLN02823        103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG  182 (336)
T ss_pred             CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence            457899999999999998877556789999999999999998753100  0123457778888754 3445689999997


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      -
T Consensus       183 D  183 (336)
T PLN02823        183 D  183 (336)
T ss_pred             c
Confidence            4

>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases

Probab=97.90  E-value=1.4e-05  Score=64.28  Aligned_cols=57  Identities=12%  Similarity=0.020  Sum_probs=34.1

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...|.|+|||.+.++..+.+   .-+|.-.|+-.               .+  -..+.+|+.++|++++++|++|.+
T Consensus        73 ~~viaD~GCGdA~la~~~~~---~~~V~SfDLva---------------~n--~~Vtacdia~vPL~~~svDv~Vfc  129 (219)
T PF05148_consen   73 SLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA---------------PN--PRVTACDIANVPLEDESVDVAVFC  129 (219)
T ss_dssp             TS-EEEES-TT-HHHHH--S------EEEEESS----------------SS--TTEEES-TTS-S--TT-EEEEEEE
T ss_pred             CEEEEECCCchHHHHHhccc---CceEEEeeccC---------------CC--CCEEEecCccCcCCCCceeEEEEE
Confidence            46899999999999988754   24799999953               11  123779999999999999998764

; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=97.88  E-value=0.0001  Score=57.26  Aligned_cols=79  Identities=13%  Similarity=-0.034  Sum_probs=45.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc--CCCceeEEEccCCC-C--C-CCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEEF-L--P-LKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~--~~~~~~~~~~D~e~-L--P-f~~~sfD  163 (171)
                      .+..+|||||||+|..+..++......+|+..|..+ .++..+..... +.  ...++.....|-.. .  + +.++.||
T Consensus        44 ~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~-N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D  121 (173)
T PF10294_consen   44 FRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL-NGSLLDGRVSVRPLDWGDELDSDLLEPHSFD  121 (173)
T ss_dssp             TTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT-T--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred             cCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh-ccccccccccCcEEEecCcccccccccccCC
Confidence            456899999999999998888754567999999998 77776543321 01  12244445544322 1  1 3457899


Q ss_pred             eEEEecc
Q 030823          164 RFFVLAL  170 (171)
Q Consensus       164 lV~s~~~  170 (171)
                      +|+.+-+
T Consensus       122 ~IlasDv  128 (173)
T PF10294_consen  122 VILASDV  128 (173)
T ss_dssp             EEEEES-
T ss_pred             EEEEecc
Confidence            9998754

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=97.87  E-value=5.7e-05  Score=58.98  Aligned_cols=71  Identities=18%  Similarity=0.161  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfDl  164 (171)
                      ...-|||+|.|||-+++.+..++ +...++.++.|++......+..     ++.+  ++.||++.+.     +++..||.
T Consensus        48 sglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~~~--ii~gda~~l~~~l~e~~gq~~D~  120 (194)
T COG3963          48 SGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PGVN--IINGDAFDLRTTLGEHKGQFFDS  120 (194)
T ss_pred             cCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CCcc--ccccchhhHHHHHhhcCCCeeee
Confidence            34579999999999999998765 5679999999999999987743     4433  5788888774     67889999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+|.
T Consensus       121 viS~  124 (194)
T COG3963         121 VISG  124 (194)
T ss_pred             EEec
Confidence            9985

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=97.85  E-value=6.5e-05  Score=70.12  Aligned_cols=96  Identities=9%  Similarity=-0.088  Sum_probs=70.1

Q ss_pred             CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc------------C-----------------------
Q 030823           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR------------G-----------------------  113 (171)
Q Consensus        69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~------------~-----------------------  113 (171)
                      ...++.+.+|..|+. +..+..+...++|.+||+|.+....+..            +                       
T Consensus       169 ~~Apl~etlAaa~l~-~a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~  247 (702)
T PRK11783        169 GEAPLKENLAAAILL-RSGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQER  247 (702)
T ss_pred             CCCCCcHHHHHHHHH-HcCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHH
Confidence            467889889888874 3444345578999999999987554320            0                       


Q ss_pred             -------CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCC--CCccceEEEe
Q 030823          114 -------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLK--ERYACRFFVL  168 (171)
Q Consensus       114 -------~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~--~~sfDlV~s~  168 (171)
                             ...+++|+|++++|+..|++...   ..++  .+.+..+|...++.+  .++||+|++|
T Consensus       248 ~~~~~~~~~~~i~G~Did~~av~~A~~N~~---~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN  310 (702)
T PRK11783        248 ARAGLAELPSKFYGSDIDPRVIQAARKNAR---RAGVAELITFEVKDVADLKNPLPKGPTGLVISN  310 (702)
T ss_pred             HhhcccccCceEEEEECCHHHHHHHHHHHH---HcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence                   11369999999999999987543   2344  367888999888654  3589999997

>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional

Probab=97.85  E-value=6.7e-05  Score=65.40  Aligned_cols=74  Identities=16%  Similarity=0.030  Sum_probs=54.7

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|||++||+|.++..++...+..+|+++|++++.++.+++...   ..++ +..+..+|.+.+....+.||+|+..
T Consensus        58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~---~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD  132 (382)
T PRK04338         58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLE---LNGLENEKVFNKDANALLHEERKFDVVDID  132 (382)
T ss_pred             CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence            358999999999999998764445699999999999999876432   1223 3456778876543224679999874

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.84  E-value=6.2e-05  Score=62.72  Aligned_cols=45  Identities=20%  Similarity=0.167  Sum_probs=35.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhh
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      .+.+|||+|||+|...-...+.. ...+++++|.|+.|++.++...
T Consensus        33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~   78 (274)
T PF09243_consen   33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL   78 (274)
T ss_pred             CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence            34689999999997766555432 3579999999999999988754

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]

Probab=97.83  E-value=3.6e-05  Score=65.59  Aligned_cols=78  Identities=18%  Similarity=0.107  Sum_probs=56.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC----CceeEEEccCC------CCCCC
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEE------FLPLK  158 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~----~~~~~~~~D~e------~LPf~  158 (171)
                      .++...++|+|||-|-=+..+... .++.++|+|+++..++.|+.+...++...    ..+.|+++|..      .++++
T Consensus       115 ~~~~~~~~~LgCGKGGDLlKw~kA-gI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~~l~d~~e~~  193 (389)
T KOG1975|consen  115 TKRGDDVLDLGCGKGGDLLKWDKA-GIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKERLMDLLEFK  193 (389)
T ss_pred             hccccccceeccCCcccHhHhhhh-cccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchhHHHHhccCC
Confidence            456688999999988655555442 68899999999999999987765432222    14678888753      44667


Q ss_pred             CCccceEEE
Q 030823          159 ERYACRFFV  167 (171)
Q Consensus       159 ~~sfDlV~s  167 (171)
                      +.+||+|.|
T Consensus       194 dp~fDivSc  202 (389)
T KOG1975|consen  194 DPRFDIVSC  202 (389)
T ss_pred             CCCcceeee
Confidence            777999875

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=97.82  E-value=0.00018  Score=53.89  Aligned_cols=76  Identities=16%  Similarity=0.091  Sum_probs=50.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhh-----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRG-----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~-----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfD  163 (171)
                      .+...|+|+|||-|+++..|..     . +.-+|+++|.++.+++.+.+......... ....++.++....+. ++..+
T Consensus        24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  101 (141)
T PF13679_consen   24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESS-SDPPD  101 (141)
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcc-cCCCe
Confidence            4568999999999999999987     4 55799999999999998876543211111 234444454433322 45555


Q ss_pred             eEEE
Q 030823          164 RFFV  167 (171)
Q Consensus       164 lV~s  167 (171)
                      +++.
T Consensus       102 ~~vg  105 (141)
T PF13679_consen  102 ILVG  105 (141)
T ss_pred             EEEE
Confidence            5554

>PLN02476 O-methyltransferase

Probab=97.81  E-value=0.00013  Score=61.03  Aligned_cols=76  Identities=12%  Similarity=-0.048  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC-CCC-C----CCCc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE-FLP-L----KERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e-~LP-f----~~~s  161 (171)
                      +..+|||||+++|..+..++..- +.++|+.+|.++++++.|++..+   ..+.  .+.++.+|+. .|| +    .+++
T Consensus       118 ~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~---~aGl~~~I~li~GdA~e~L~~l~~~~~~~~  194 (278)
T PLN02476        118 GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYE---LAGVSHKVNVKHGLAAESLKSMIQNGEGSS  194 (278)
T ss_pred             CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHHhcccCCC
Confidence            45799999999999999987632 35689999999999999987553   2343  5778888863 343 2    2468


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|+.-+
T Consensus       195 FD~VFIDa  202 (278)
T PLN02476        195 YDFAFVDA  202 (278)
T ss_pred             CCEEEECC
Confidence            99998643

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=97.80  E-value=0.00012  Score=59.26  Aligned_cols=75  Identities=11%  Similarity=0.122  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE-ccC-CCCC-CCCCccce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV-GDE-EFLP-LKERYACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~-~D~-e~LP-f~~~sfDl  164 (171)
                      +..+||+||.+.|.-+..++..-+ .++++.+|.++++.+.|++...   ..++  .+..+. +|. +.+. +..++||+
T Consensus        59 ~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~---~ag~~~~i~~~~~gdal~~l~~~~~~~fDl  135 (219)
T COG4122          59 GPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLA---EAGVDDRIELLLGGDALDVLSRLLDGSFDL  135 (219)
T ss_pred             CCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHH---HcCCcceEEEEecCcHHHHHHhccCCCccE
Confidence            568999999999999999986544 6799999999999999987553   3443  255566 353 2233 56799999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+.=
T Consensus       136 iFID  139 (219)
T COG4122         136 VFID  139 (219)
T ss_pred             EEEe
Confidence            9864

>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]

Probab=97.77  E-value=0.00025  Score=49.15  Aligned_cols=69  Identities=25%  Similarity=0.300  Sum_probs=47.2

Q ss_pred             EEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEEccCCC--CCCCC-CccceEEE
Q 030823           95 ALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVVGDEEF--LPLKE-RYACRFFV  167 (171)
Q Consensus        95 vLDlGcGtG~l~~~L~~~~~~-~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-~~~~~~D~e~--LPf~~-~sfDlV~s  167 (171)
                      ++|+|||+|... .+...... ..++++|+++.|+..+.....   ..... +.+..++...  +|+.+ ..||++.+
T Consensus        52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~  125 (257)
T COG0500          52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAE---GAGLGLVDFVVADALGGVLPFEDSASFDLVIS  125 (257)
T ss_pred             eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhh---hcCCCceEEEEeccccCCCCCCCCCceeEEee
Confidence            999999999965 33332221 489999999999999554221   11111 4677788775  89887 59999943

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=97.74  E-value=7e-05  Score=67.47  Aligned_cols=78  Identities=9%  Similarity=-0.014  Sum_probs=60.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      ...+.+||||||.|.++..++...+...++|+|++...+..+-.+..   ..+. ++.+++.|++.+.  |+++++|-|+
T Consensus       346 ~~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~---~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~  422 (506)
T PRK01544        346 EKRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAG---EQNITNFLLFPNNLDLILNDLPNNSLDGIY  422 (506)
T ss_pred             CCCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHH---HcCCCeEEEEcCCHHHHHHhcCcccccEEE
Confidence            45688999999999999999988888899999999988877755432   2333 5666777776443  7889999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      .+.=
T Consensus       423 i~FP  426 (506)
T PRK01544        423 ILFP  426 (506)
T ss_pred             EECC
Confidence            8753

>KOG2361 consensus Predicted methyltransferase [General function prediction only]

Probab=97.73  E-value=4.6e-05  Score=62.52  Aligned_cols=76  Identities=16%  Similarity=0.018  Sum_probs=51.5

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCC--cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~--~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~LPf~~~sfDlV~s~  168 (171)
                      .+||++|||.|+..-.|.+..+.  -.|+++|.|+..++..++...- ..........-.+.+  .-|.+++++|+|++.
T Consensus        73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~-~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I  151 (264)
T KOG2361|consen   73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGY-DESRVEAFVWDLTSPSLKEPPEEGSVDIITLI  151 (264)
T ss_pred             hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhcccc-chhhhcccceeccchhccCCCCcCccceEEEE
Confidence            47999999999998888765444  5899999999999998763210 011111212222223  346789999999876


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       152 F  152 (264)
T KOG2361|consen  152 F  152 (264)
T ss_pred             E
Confidence            4

>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family

Probab=97.64  E-value=0.00025  Score=56.69  Aligned_cols=77  Identities=13%  Similarity=0.094  Sum_probs=50.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+.+.|+|+-||-|.++..++...+...|+++|+.|..++..++...   ..++  .+..+.+|...++. .+.||-|+
T Consensus        99 v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~---lNkv~~~i~~~~~D~~~~~~-~~~~drvi  174 (200)
T PF02475_consen   99 VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIR---LNKVENRIEVINGDAREFLP-EGKFDRVI  174 (200)
T ss_dssp             --TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHH---HTT-TTTEEEEES-GGG----TT-EEEEE
T ss_pred             CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHH---HcCCCCeEEEEcCCHHHhcC-ccccCEEE
Confidence            356789999999999999999875566899999999988888765332   1222  36678899887775 89999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++-
T Consensus       175 m~l  177 (200)
T PF02475_consen  175 MNL  177 (200)
T ss_dssp             E--
T ss_pred             ECC
Confidence            864

Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=97.63  E-value=8e-05  Score=57.76  Aligned_cols=70  Identities=19%  Similarity=0.130  Sum_probs=48.0

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC--CCCCc-cceEEEe
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP--LKERY-ACRFFVL  168 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP--f~~~s-fDlV~s~  168 (171)
                      .|+|+.||.|-.+..+++.  ..+|+++|+++..+..++...   ..-++  ++.|+++|...+.  +..+. +|+|+.+
T Consensus         2 ~vlD~fcG~GGNtIqFA~~--~~~Viaidid~~~~~~a~hNa---~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS   76 (163)
T PF09445_consen    2 TVLDAFCGVGGNTIQFART--FDRVIAIDIDPERLECAKHNA---EVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS   76 (163)
T ss_dssp             EEEETT-TTSHHHHHHHHT--T-EEEEEES-HHHHHHHHHHH---HHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred             EEEEeccCcCHHHHHHHHh--CCeEEEEECCHHHHHHHHHHH---HHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence            6899999999999999985  479999999999999997532   23554  6889999976542  22223 8999875

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases

Probab=97.62  E-value=5.4e-05  Score=67.62  Aligned_cols=69  Identities=14%  Similarity=0.092  Sum_probs=45.6

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCc-EEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIE-KLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~-~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+||+|||+|.++..|.+++-.. .+..-|..+..++-|-+       .|+...+-+.....|||++++||+|-|+
T Consensus       119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale-------RGvpa~~~~~~s~rLPfp~~~fDmvHcs  188 (506)
T PF03141_consen  119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE-------RGVPAMIGVLGSQRLPFPSNAFDMVHCS  188 (506)
T ss_pred             EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh-------cCcchhhhhhccccccCCccchhhhhcc
Confidence            578999999999999998743111 11122444455555533       5554433344457999999999999775

; GO: 0008168 methyltransferase activity

>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]

Probab=97.62  E-value=0.00016  Score=60.08  Aligned_cols=57  Identities=11%  Similarity=0.032  Sum_probs=43.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .....|.|+|||.+.++.  .   ...+|..+|+-.                 ++-..+.+|+..+|++|+|+|++|.+
T Consensus       179 ~~~~vIaD~GCGEakiA~--~---~~~kV~SfDL~a-----------------~~~~V~~cDm~~vPl~d~svDvaV~C  235 (325)
T KOG3045|consen  179 PKNIVIADFGCGEAKIAS--S---ERHKVHSFDLVA-----------------VNERVIACDMRNVPLEDESVDVAVFC  235 (325)
T ss_pred             cCceEEEecccchhhhhh--c---cccceeeeeeec-----------------CCCceeeccccCCcCccCcccEEEee
Confidence            345678999999998886  2   225899999842                 12233789999999999999998765

>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2

Probab=97.60  E-value=0.00029  Score=59.05  Aligned_cols=92  Identities=9%  Similarity=-0.113  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-------CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-  143 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-------~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-  143 (171)
                      |.-..+++.|+..+.  ..+..+|+|.+||+|.+...+.+.       .....++|+|+++.++..++-...   ..+. 
T Consensus        29 ~TP~~i~~l~~~~~~--~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~---l~~~~  103 (311)
T PF02384_consen   29 YTPREIVDLMVKLLN--PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL---LHGID  103 (311)
T ss_dssp             ---HHHHHHHHHHHT--T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH---HTTHH
T ss_pred             ehHHHHHHHHHhhhh--ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh---hhccc
Confidence            344566666665552  234568999999999997766541       245799999999999988764221   1222 


Q ss_pred             --ceeEEEccCCCCCCC--CCccceEEEe
Q 030823          144 --ETCFVVGDEEFLPLK--ERYACRFFVL  168 (171)
Q Consensus       144 --~~~~~~~D~e~LPf~--~~sfDlV~s~  168 (171)
                        ......+|.-..+..  ...||+|++|
T Consensus       104 ~~~~~i~~~d~l~~~~~~~~~~~D~ii~N  132 (311)
T PF02384_consen  104 NSNINIIQGDSLENDKFIKNQKFDVIIGN  132 (311)
T ss_dssp             CBGCEEEES-TTTSHSCTST--EEEEEEE
T ss_pred             cccccccccccccccccccccccccccCC
Confidence              123566665444432  5899999987

1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.

>TIGR01444 fkbM_fam methyltransferase, FkbM family

Probab=97.59  E-value=0.00015  Score=53.60  Aligned_cols=42  Identities=10%  Similarity=0.249  Sum_probs=36.8

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ++||+|||.|.++..+...++..+|+++|+++++...+++..
T Consensus         1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~   42 (143)
T TIGR01444         1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENV   42 (143)
T ss_pred             CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHH
Confidence            489999999999999988766669999999999999887653

Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.

>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional

Probab=97.59  E-value=0.00031  Score=60.49  Aligned_cols=68  Identities=15%  Similarity=-0.012  Sum_probs=49.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..++|||||++|.++..|.+++  .+|++||..+ |-....        ....+....+|......+.+.+|+|+|=
T Consensus       210 ~~g~~vlDLGAsPGGWT~~L~~rG--~~V~AVD~g~-l~~~L~--------~~~~V~h~~~d~fr~~p~~~~vDwvVcD  277 (357)
T PRK11760        210 APGMRAVDLGAAPGGWTYQLVRRG--MFVTAVDNGP-MAQSLM--------DTGQVEHLRADGFKFRPPRKNVDWLVCD  277 (357)
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHcC--CEEEEEechh-cCHhhh--------CCCCEEEEeccCcccCCCCCCCCEEEEe
Confidence            567899999999999999999865  5999999664 332221        3345666777765443236889999874

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=97.57  E-value=0.001  Score=52.52  Aligned_cols=88  Identities=13%  Similarity=0.017  Sum_probs=58.1

Q ss_pred             HHHHHHHHhc---ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           79 ENLLDRLEDC---RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        79 ~~l~~rL~~i---~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      ..+.|-|..+   .....+++|||+|.|.-+..|+=..|..+++.+|....-+.-.+....   .-+. ++..+.+.+|.
T Consensus        33 ~Hi~DSL~~~~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~---~L~L~nv~v~~~R~E~  109 (184)
T PF02527_consen   33 RHILDSLALLPFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVR---ELGLSNVEVINGRAEE  109 (184)
T ss_dssp             HHHHHHHGGGGCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHH---HHT-SSEEEEES-HHH
T ss_pred             HHHHHHHHhhhhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHH---HhCCCCEEEEEeeecc
Confidence            3444544432   223338999999999888877654577899999999866554443221   1222 47778888888


Q ss_pred             CCCCCCccceEEEecc
Q 030823          155 LPLKERYACRFFVLAL  170 (171)
Q Consensus       155 LPf~~~sfDlV~s~~~  170 (171)
                       +...++||+|++=|+
T Consensus       110 -~~~~~~fd~v~aRAv  124 (184)
T PF02527_consen  110 -PEYRESFDVVTARAV  124 (184)
T ss_dssp             -TTTTT-EEEEEEESS
T ss_pred             -cccCCCccEEEeehh
Confidence             667899999999776

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like

Probab=97.56  E-value=0.00035  Score=56.54  Aligned_cols=76  Identities=13%  Similarity=0.064  Sum_probs=47.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ...++||.|+|-|.++..|.-. ...+|-.+|+.+..++.|++....  ....-..+.+...+.+-.+++.||+|++-.
T Consensus        55 ~~~~alDcGAGIGRVTk~lLl~-~f~~VDlVEp~~~Fl~~a~~~l~~--~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW  130 (218)
T PF05891_consen   55 KFNRALDCGAGIGRVTKGLLLP-VFDEVDLVEPVEKFLEQAKEYLGK--DNPRVGEFYCVGLQDFTPEEGKYDLIWIQW  130 (218)
T ss_dssp             --SEEEEET-TTTHHHHHTCCC-C-SEEEEEES-HHHHHHHHHHTCC--GGCCEEEEEES-GGG----TT-EEEEEEES
T ss_pred             CcceEEecccccchhHHHHHHH-hcCEeEEeccCHHHHHHHHHHhcc--cCCCcceEEecCHhhccCCCCcEeEEEehH
Confidence            4689999999999999988532 358999999999999999864310  011123445555555544578999999854

; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=97.53  E-value=0.00032  Score=57.82  Aligned_cols=76  Identities=16%  Similarity=0.027  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC-CCC-C-----CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE-FLP-L-----KER  160 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e-~LP-f-----~~~  160 (171)
                      +..+||+||+++|.-+..++.. .+.++|+.+|.++++.+.|++...   ..+.  .+.++.+++. .|| +     .++
T Consensus        79 ~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~---~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~  155 (247)
T PLN02589         79 NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQ---KAGVAHKIDFREGPALPVLDQMIEDGKYHG  155 (247)
T ss_pred             CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH---HCCCCCceEEEeccHHHHHHHHHhccccCC
Confidence            4579999999999999888763 246799999999999999987653   2332  5778888864 333 1     136


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|+.-+
T Consensus       156 ~fD~iFiDa  164 (247)
T PLN02589        156 TFDFIFVDA  164 (247)
T ss_pred             cccEEEecC
Confidence            999998643

>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=0.00045  Score=55.77  Aligned_cols=84  Identities=13%  Similarity=0.012  Sum_probs=61.7

Q ss_pred             HhcccCCCeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhhhh-hc-------cCCCceeEEEccCCCC
Q 030823           86 EDCRKTFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQD-AH-------NDNIETCFVVGDEEFL  155 (171)
Q Consensus        86 ~~i~~~~~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~~~~-~~-------~~~~~~~~~~~D~e~L  155 (171)
                      .+..++..++||+|.|||.++..+..-  .+...++|+|.-++.++.+++.... .+       -...++.++++|.-..
T Consensus        77 ~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g  156 (237)
T KOG1661|consen   77 DDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG  156 (237)
T ss_pred             HHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence            333467889999999999999877631  1334559999999999998765421 11       0123577899999888


Q ss_pred             CCCCCccceEEEec
Q 030823          156 PLKERYACRFFVLA  169 (171)
Q Consensus       156 Pf~~~sfDlV~s~~  169 (171)
                      --+...||.|.+.|
T Consensus       157 ~~e~a~YDaIhvGA  170 (237)
T KOG1661|consen  157 YAEQAPYDAIHVGA  170 (237)
T ss_pred             CCccCCcceEEEcc
Confidence            77889999998865

>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family

Probab=97.50  E-value=0.00031  Score=63.34  Aligned_cols=45  Identities=13%  Similarity=-0.016  Sum_probs=35.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC--------CcEEEEEeCCHHHHHHHHHhh
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG--------IEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~--------~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ...+|||.|||+|.+...+.....        ...++|+|+++..+..++...
T Consensus        31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l   83 (524)
T TIGR02987        31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL   83 (524)
T ss_pred             cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence            346899999999999887764221        257899999999999987643

Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=97.50  E-value=0.00039  Score=59.88  Aligned_cols=73  Identities=14%  Similarity=0.104  Sum_probs=54.7

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...|||+|||+|.++..-++. ..++|++++.| +|.+.|+..... ++-.-.+..+-|-.|.+.+ ++..|+|+|-
T Consensus       178 ~kiVlDVGaGSGILS~FAaqA-GA~~vYAvEAS-~MAqyA~~Lv~~-N~~~~rItVI~GKiEdieL-PEk~DviISE  250 (517)
T KOG1500|consen  178 DKIVLDVGAGSGILSFFAAQA-GAKKVYAVEAS-EMAQYARKLVAS-NNLADRITVIPGKIEDIEL-PEKVDVIISE  250 (517)
T ss_pred             CcEEEEecCCccHHHHHHHHh-CcceEEEEehh-HHHHHHHHHHhc-CCccceEEEccCccccccC-chhccEEEec
Confidence            467999999999998777664 45799999986 688888875431 1111246667788998887 5889999973

>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family

Probab=97.49  E-value=0.0011  Score=56.71  Aligned_cols=78  Identities=12%  Similarity=0.012  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCC--CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPL--KER  160 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf--~~~  160 (171)
                      +...++|+|||+|.=+..|.+    ......++++|+|.++|+.+.+......-+.+.+.-+++|.+.    +|-  ..+
T Consensus        76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l~~~~~~~  155 (319)
T TIGR03439        76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWLKRPENRS  155 (319)
T ss_pred             CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhcccccccC
Confidence            445899999999977666543    2234589999999999999876542111234556667887643    321  234


Q ss_pred             ccceEEEe
Q 030823          161 YACRFFVL  168 (171)
Q Consensus       161 sfDlV~s~  168 (171)
                      ...+|+..
T Consensus       156 ~~r~~~fl  163 (319)
T TIGR03439       156 RPTTILWL  163 (319)
T ss_pred             CccEEEEe
Confidence            46676654

This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=97.49  E-value=0.00065  Score=56.09  Aligned_cols=74  Identities=15%  Similarity=0.104  Sum_probs=59.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeEEEccCCCCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~-~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .+..+|||.|.|+|.++..|+. .++.++|+.+|.-+++++.|++..+.   .+. + +.+..+|....-+++ .||.|+
T Consensus        93 ~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~---~~l~d~v~~~~~Dv~~~~~~~-~vDav~  168 (256)
T COG2519          93 SPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSE---FGLGDRVTLKLGDVREGIDEE-DVDAVF  168 (256)
T ss_pred             CCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHH---hccccceEEEecccccccccc-ccCEEE
Confidence            5779999999999999999985 45678999999999999999875431   132 2 667778887777655 999998


Q ss_pred             E
Q 030823          167 V  167 (171)
Q Consensus       167 s  167 (171)
                      .
T Consensus       169 L  169 (256)
T COG2519         169 L  169 (256)
T ss_pred             E
Confidence            5

>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []

Probab=97.48  E-value=0.00079  Score=55.50  Aligned_cols=77  Identities=12%  Similarity=0.012  Sum_probs=53.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC---CCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---ERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~---~~sfDlV  165 (171)
                      ++..+|||.|.|+|.++..|++ -++.++|+..|..++..+.|++..+. ....-++.+...|...-.|+   ++.+|.|
T Consensus        39 ~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~-~gl~~~v~~~~~Dv~~~g~~~~~~~~~Dav  117 (247)
T PF08704_consen   39 RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER-HGLDDNVTVHHRDVCEEGFDEELESDFDAV  117 (247)
T ss_dssp             -TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH-TTCCTTEEEEES-GGCG--STT-TTSEEEE
T ss_pred             CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH-cCCCCCceeEecceecccccccccCcccEE
Confidence            5789999999999999999985 34678999999999999999876542 11122577888887544442   3689998


Q ss_pred             EE
Q 030823          166 FV  167 (171)
Q Consensus       166 ~s  167 (171)
                      +.
T Consensus       118 fL  119 (247)
T PF08704_consen  118 FL  119 (247)
T ss_dssp             EE
T ss_pred             EE
Confidence            74

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=97.43  E-value=0.00087  Score=53.79  Aligned_cols=74  Identities=9%  Similarity=-0.066  Sum_probs=47.9

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--CC------CCCccceE
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PL------KERYACRF  165 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L--Pf------~~~sfDlV  165 (171)
                      +|||||||||..+..+++..+.-...-.|+.+..+..-.+-......+++. ..+..|...-  |.      ..++||+|
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~-~P~~lDv~~~~w~~~~~~~~~~~~~D~i  106 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVR-PPLALDVSAPPWPWELPAPLSPESFDAI  106 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccC-CCeEeecCCCCCccccccccCCCCccee
Confidence            599999999999999998887778889999988864433211100112221 1233443332  32      36799999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      ++.
T Consensus       107 ~~~  109 (204)
T PF06080_consen  107 FCI  109 (204)
T ss_pred             eeh
Confidence            985

The function of this family is unknown.

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=97.41  E-value=0.0006  Score=53.98  Aligned_cols=74  Identities=14%  Similarity=0.066  Sum_probs=51.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...-+||||||+|-++..|... ++.....++|++++.++.-.+-..   ..++.+..++.|...- +.++++|+++-|
T Consensus        43 ~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~---~n~~~~~~V~tdl~~~-l~~~~VDvLvfN  117 (209)
T KOG3191|consen   43 NPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETAR---CNRVHIDVVRTDLLSG-LRNESVDVLVFN  117 (209)
T ss_pred             CceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHH---hcCCccceeehhHHhh-hccCCccEEEEC
Confidence            3567899999999999988753 355678899999999988654321   2334455566664322 234899988765

>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]

Probab=97.40  E-value=0.00053  Score=59.65  Aligned_cols=98  Identities=8%  Similarity=-0.110  Sum_probs=73.4

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-------------------------------
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-------------------------------  114 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-------------------------------  114 (171)
                      .+.-..+|+..+|..|+.+ ..... ...++|-=||+|.+....+-...                               
T Consensus       168 ~~~g~ApLketLAaAil~l-agw~~-~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~  245 (381)
T COG0116         168 VYDGPAPLKETLAAAILLL-AGWKP-DEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAE  245 (381)
T ss_pred             ccCCCCCchHHHHHHHHHH-cCCCC-CCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHH
Confidence            3566789999999988754 33332 25799999999999876653221                               


Q ss_pred             --------CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823          115 --------IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       115 --------~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                              ...++|+|+++.|++.|+...   ...++  .+.|.++|...++-+-+.+|+|+||
T Consensus       246 ~~a~~~~~~~~~~G~Did~r~i~~Ak~NA---~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N  306 (381)
T COG0116         246 ERARRGKELPIIYGSDIDPRHIEGAKANA---RAAGVGDLIEFKQADATDLKEPLEEYGVVISN  306 (381)
T ss_pred             HHHhhcCccceEEEecCCHHHHHHHHHHH---HhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence                    014789999999999998643   34665  4889999999887544899999998

>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]

Probab=97.35  E-value=0.0016  Score=54.73  Aligned_cols=79  Identities=15%  Similarity=0.132  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~  168 (171)
                      +.+||-||.|.|..++.+.+..+..+++++|+.+++++.+++..-...  ..+..+..+..|.-. +.-.++.||+|++-
T Consensus        77 pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D  156 (282)
T COG0421          77 PKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVD  156 (282)
T ss_pred             CCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEc
Confidence            369999999999999999987788999999999999999987542100  013445667777643 34334489999986


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .-
T Consensus       157 ~t  158 (282)
T COG0421         157 ST  158 (282)
T ss_pred             CC
Confidence            54

>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed

Probab=97.35  E-value=0.00085  Score=60.09  Aligned_cols=94  Identities=6%  Similarity=-0.065  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV  148 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~  148 (171)
                      =++++..+......|..-..+..+|||++||+|.=+.+++... +.+.|+++|+++..+...++..+   ..++ ++...
T Consensus        93 ~yvQd~sS~l~~~~L~~~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~---r~G~~nv~v~  169 (470)
T PRK11933         93 FYIQEASSMLPVAALFADDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANIS---RCGVSNVALT  169 (470)
T ss_pred             EEEECHHHHHHHHHhccCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEE
Confidence            3556666665544442112567899999999999888887643 34699999999999998876543   2344 45556


Q ss_pred             EccCCCCC-CCCCccceEEE
Q 030823          149 VGDEEFLP-LKERYACRFFV  167 (171)
Q Consensus       149 ~~D~e~LP-f~~~sfDlV~s  167 (171)
                      ..|...++ ..++.||.|+.
T Consensus       170 ~~D~~~~~~~~~~~fD~ILv  189 (470)
T PRK11933        170 HFDGRVFGAALPETFDAILL  189 (470)
T ss_pred             eCchhhhhhhchhhcCeEEE
Confidence            67877653 33578999984

>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2

Probab=97.34  E-value=0.001  Score=54.55  Aligned_cols=81  Identities=14%  Similarity=0.146  Sum_probs=56.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-CCCCC-ccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-PLKER-YACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-Pf~~~-sfDlV  165 (171)
                      ....+||-||.|.|..++.+.+..+..+|+++|+++.+++.+++-....  ...+.++..+.+|+... --..+ .||+|
T Consensus        75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI  154 (246)
T PF01564_consen   75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI  154 (246)
T ss_dssp             SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred             CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence            3578999999999999999988666789999999999999998643110  11234566788887533 22233 89999


Q ss_pred             EEecc
Q 030823          166 FVLAL  170 (171)
Q Consensus       166 ~s~~~  170 (171)
                      +.-..
T Consensus       155 i~D~~  159 (246)
T PF01564_consen  155 IVDLT  159 (246)
T ss_dssp             EEESS
T ss_pred             EEeCC
Confidence            97543

5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....

>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]

Probab=97.29  E-value=0.00069  Score=58.26  Aligned_cols=73  Identities=16%  Similarity=-0.048  Sum_probs=56.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc-eeEEE-ccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-TCFVV-GDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-~~~~~-~D~e~LPf~~~sfDlV~s  167 (171)
                      ++...+||==||||.+.....-.  ..+++|+|++..|+.-++...+   .-+++ ..+.. .|+..+||++++||.|++
T Consensus       196 ~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~---~y~i~~~~~~~~~Da~~lpl~~~~vdaIat  270 (347)
T COG1041         196 KRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLE---YYGIEDYPVLKVLDATNLPLRDNSVDAIAT  270 (347)
T ss_pred             ccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhh---hhCcCceeEEEecccccCCCCCCccceEEe
Confidence            45679999999999998877653  3799999999999999976332   12222 22333 499999999999999985

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=97.28  E-value=0.0007  Score=53.26  Aligned_cols=75  Identities=17%  Similarity=0.166  Sum_probs=48.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC---CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP---LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP---f~~~sfDlV~  166 (171)
                      ...++||+-||||.++.....++ ..+|+.+|.+++.+...++..+...... ....+..|.. .++   -....||+|+
T Consensus        42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~-~~~v~~~d~~~~l~~~~~~~~~fDiIf  119 (183)
T PF03602_consen   42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLED-KIRVIKGDAFKFLLKLAKKGEKFDIIF  119 (183)
T ss_dssp             TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GG-GEEEEESSHHHHHHHHHHCTS-EEEEE
T ss_pred             CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCc-ceeeeccCHHHHHHhhcccCCCceEEE
Confidence            45899999999999988766554 5799999999999998876443211111 3455666643 332   2478999998


Q ss_pred             E
Q 030823          167 V  167 (171)
Q Consensus       167 s  167 (171)
                      .
T Consensus       120 l  120 (183)
T PF03602_consen  120 L  120 (183)
T ss_dssp             E
T ss_pred             E
Confidence            5

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins

Probab=97.23  E-value=0.0013  Score=52.67  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=51.6

Q ss_pred             EEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCCCCCCc-cceEEEecc
Q 030823           95 ALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLPLKERY-ACRFFVLAL  170 (171)
Q Consensus        95 vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~LPf~~~s-fDlV~s~~~  170 (171)
                      |+|+||--|.+...|.+.+...+++++|+++.-++.|++...   ..+.  .+....+|. +.++  ++. .|.|+..++
T Consensus         1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~---~~~l~~~i~~rlgdGL~~l~--~~e~~d~ivIAGM   75 (205)
T PF04816_consen    1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIA---KYGLEDRIEVRLGDGLEVLK--PGEDVDTIVIAGM   75 (205)
T ss_dssp             EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH---HTT-TTTEEEEE-SGGGG----GGG---EEEEEEE
T ss_pred             CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCcccEEEEECCcccccC--CCCCCCEEEEecC
Confidence            689999999999999998888899999999999999987653   2332  477788885 4443  444 899998764

; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.

>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]

Probab=97.21  E-value=0.00065  Score=60.93  Aligned_cols=59  Identities=20%  Similarity=0.255  Sum_probs=47.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      ....+||+.||||.++..+++  +.++|+|++++++.+.-|+...   ...++ +.+|++|-+|.
T Consensus       383 ~~k~llDv~CGTG~iglala~--~~~~ViGvEi~~~aV~dA~~nA---~~NgisNa~Fi~gqaE~  442 (534)
T KOG2187|consen  383 ADKTLLDVCCGTGTIGLALAR--GVKRVIGVEISPDAVEDAEKNA---QINGISNATFIVGQAED  442 (534)
T ss_pred             CCcEEEEEeecCCceehhhhc--cccceeeeecChhhcchhhhcc---hhcCccceeeeecchhh
Confidence            446789999999999999998  6689999999999999987532   34565 78999994443

>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=97.17  E-value=0.002  Score=51.26  Aligned_cols=97  Identities=16%  Similarity=0.024  Sum_probs=47.3

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCc----HHHHHHhh--cCC---CcEEEEEeCCHHHHHHHHHhhhhh--
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLE----AVRRLLRG--RGG---IEKLIMMDTSYDMLKLCKDAQQDA--  138 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG----~l~~~L~~--~~~---~~~v~gvD~S~~mL~~a~~~~~~~--  138 (171)
                      .+.+.+.+...++++..  ..+.-+|+..||+||    .++..|.+  ...   .-+|+|.|+|+.+|+.|++-....  
T Consensus        12 f~~l~~~vlp~~~~~~~--~~~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~   89 (196)
T PF01739_consen   12 FEALRDEVLPPLLARAR--PGRPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERS   89 (196)
T ss_dssp             HHHHHHHHH-------C--S-S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGG
T ss_pred             HHHHHHHHHHhhccccC--CCCCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHH
Confidence            45555555544333221  124578999999999    34444444  111   239999999999999997632110  


Q ss_pred             --------------ccCC----------CceeEEEccCCCCCCCCCccceEEEe
Q 030823          139 --------------HNDN----------IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       139 --------------~~~~----------~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                                    ...+          -.+.|...|.-..+...+.||+|+|-
T Consensus        90 ~~~~~~~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CR  143 (196)
T PF01739_consen   90 LRGLPPAYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCR  143 (196)
T ss_dssp             GTTS-HHHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S------EEEEEE-
T ss_pred             HhhhHHHHHHHhccccCCCceeEChHHcCceEEEecccCCCCcccCCccEEEec
Confidence                          0001          02567777876644567899999874

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.

>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A

Probab=97.14  E-value=0.0032  Score=51.94  Aligned_cols=75  Identities=13%  Similarity=-0.004  Sum_probs=51.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ....+|+|||||.--++..+....+...++|+|++..+++......   ...+++....+.|...-+ ++...|+.+..
T Consensus       104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l---~~l~~~~~~~v~Dl~~~~-~~~~~DlaLll  178 (251)
T PF07091_consen  104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFL---AVLGVPHDARVRDLLSDP-PKEPADLALLL  178 (251)
T ss_dssp             ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHH---HHTT-CEEEEEE-TTTSH-TTSEESEEEEE
T ss_pred             CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHH---HhhCCCcceeEeeeeccC-CCCCcchhhHH
Confidence            3468999999999988877765445579999999999999876532   234556666777766554 46788887653

>PRK00536 speE spermidine synthase; Provisional

Probab=97.11  E-value=0.0049  Score=51.25  Aligned_cols=75  Identities=12%  Similarity=0.038  Sum_probs=51.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      ..+.+||-+|.|.|..++.+.+..  .+|++||+.+++++.+++..-.  ....++++..+..   ...-..++||+|++
T Consensus        71 ~~pk~VLIiGGGDGg~~REvLkh~--~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~---~~~~~~~~fDVIIv  145 (262)
T PRK00536         71 KELKEVLIVDGFDLELAHQLFKYD--THVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ---LLDLDIKKYDLIIC  145 (262)
T ss_pred             CCCCeEEEEcCCchHHHHHHHCcC--CeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh---hhhccCCcCCEEEE
Confidence            456899999999999999998843  4999999999999999873210  0112334443331   11112478999997


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      -+
T Consensus       146 Ds  147 (262)
T PRK00536        146 LQ  147 (262)
T ss_pred             cC
Confidence            54

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=97.09  E-value=0.002  Score=51.50  Aligned_cols=71  Identities=18%  Similarity=0.171  Sum_probs=56.3

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEecc
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +.+.|+|+|+|-++..-++  ...+|++++..|.....|.+..   +.++ .++..+++|+....|  +..|+|+|--|
T Consensus        34 d~~~DLGaGsGiLs~~Aa~--~A~rViAiE~dPk~a~~a~eN~---~v~g~~n~evv~gDA~~y~f--e~ADvvicEml  105 (252)
T COG4076          34 DTFADLGAGSGILSVVAAH--AAERVIAIEKDPKRARLAEENL---HVPGDVNWEVVVGDARDYDF--ENADVVICEML  105 (252)
T ss_pred             hceeeccCCcchHHHHHHh--hhceEEEEecCcHHHHHhhhcC---CCCCCcceEEEecccccccc--cccceeHHHHh
Confidence            7789999999999877766  3579999999999988887632   2344 367778999999999  67888887544

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=97.07  E-value=0.0067  Score=49.08  Aligned_cols=73  Identities=14%  Similarity=-0.016  Sum_probs=53.6

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHH---HHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDM---LKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~m---L~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      +.+++|||+|.|.-+..|+=..+..+|+.+|....-   |+.+..      .-+. ++.++++.+|.+.-....||+|+|
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~------eL~L~nv~i~~~RaE~~~~~~~~~D~vts  141 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKK------ELGLENVEIVHGRAEEFGQEKKQYDVVTS  141 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHH------HhCCCCeEEehhhHhhcccccccCcEEEe
Confidence            589999999999888777633456679999998744   444433      2344 488899999988743333999999


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      =|+
T Consensus       142 RAv  144 (215)
T COG0357         142 RAV  144 (215)
T ss_pred             ehc
Confidence            776

>KOG1331 consensus Predicted methyltransferase [General function prediction only]

Probab=97.03  E-value=0.00035  Score=58.52  Aligned_cols=68  Identities=18%  Similarity=0.085  Sum_probs=53.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ....++|+|||.|..+..    .+.-.++|+|++...+..+++       .+.. ...++|+-.+|+.+.+||.+++.|+
T Consensus        45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~-------~~~~-~~~~ad~l~~p~~~~s~d~~lsiav  112 (293)
T KOG1331|consen   45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKR-------SGGD-NVCRADALKLPFREESFDAALSIAV  112 (293)
T ss_pred             CcceeeecccCCcccCcC----CCcceeeecchhhhhcccccc-------CCCc-eeehhhhhcCCCCCCccccchhhhh
Confidence            357789999999966532    144579999999999999864       3321 3477999999999999999998875

>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes

Probab=96.87  E-value=0.0012  Score=51.01  Aligned_cols=36  Identities=22%  Similarity=0.184  Sum_probs=30.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHH
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD  126 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~  126 (171)
                      ...++||+||++|.++..+.++. +..+|+|+|+.+.
T Consensus        23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~   59 (181)
T PF01728_consen   23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM   59 (181)
T ss_dssp             TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred             cccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence            45899999999999999999865 4589999999764

RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....

>PRK10611 chemotaxis methyltransferase CheR; Provisional

Probab=96.85  E-value=0.0026  Score=53.57  Aligned_cols=77  Identities=10%  Similarity=-0.031  Sum_probs=50.9

Q ss_pred             CCeEEEEcCCCc----HHHHHHhhcC----CCcEEEEEeCCHHHHHHHHHhhhhh----------------c--c--CC-
Q 030823           92 FPTALCLGGSLE----AVRRLLRGRG----GIEKLIMMDTSYDMLKLCKDAQQDA----------------H--N--DN-  142 (171)
Q Consensus        92 ~~~vLDlGcGtG----~l~~~L~~~~----~~~~v~gvD~S~~mL~~a~~~~~~~----------------~--~--~~-  142 (171)
                      .-+|+..||+||    .++..|.+..    ..-+|+|+|+|+.+|+.|++-....                .  .  .+ 
T Consensus       116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~  195 (287)
T PRK10611        116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL  195 (287)
T ss_pred             CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence            368999999999    3444444421    1237999999999999998642110                0  0  00 


Q ss_pred             ------C--ceeEEEccCCCCCCC-CCccceEEEe
Q 030823          143 ------I--ETCFVVGDEEFLPLK-ERYACRFFVL  168 (171)
Q Consensus       143 ------~--~~~~~~~D~e~LPf~-~~sfDlV~s~  168 (171)
                            +  .+.|...|....|++ .+.||+|+|-
T Consensus       196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cR  230 (287)
T PRK10611        196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCR  230 (287)
T ss_pred             EEEChHHHccCEEEcccCCCCCCccCCCcceeeHh
Confidence                  1  256777787665543 6899999983

>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []

Probab=96.85  E-value=0.0027  Score=50.91  Aligned_cols=81  Identities=14%  Similarity=0.033  Sum_probs=44.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh----hccCC---CceeEEEccCCCCCCCC---
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----AHNDN---IETCFVVGDEEFLPLKE---  159 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~----~~~~~---~~~~~~~~D~e~LPf~~---  159 (171)
                      .+.+..+|||||.|......+-..+..+.+|+++.+...+.|......    ....+   .++.+..+|.-..++.+   
T Consensus        41 ~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl~~~~~~~~~  120 (205)
T PF08123_consen   41 TPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFLDPDFVKDIW  120 (205)
T ss_dssp             -TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TTTHHHHHHHG
T ss_pred             CCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCccccHhHhhhh
Confidence            356889999999999877666444677899999999888777543211    01112   24555566644333221   


Q ss_pred             CccceEEEecc
Q 030823          160 RYACRFFVLAL  170 (171)
Q Consensus       160 ~sfDlV~s~~~  170 (171)
                      ...|+|++|..
T Consensus       121 s~AdvVf~Nn~  131 (205)
T PF08123_consen  121 SDADVVFVNNT  131 (205)
T ss_dssp             HC-SEEEE--T
T ss_pred             cCCCEEEEecc
Confidence            45689988753

H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....

>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=96.58  E-value=0.011  Score=47.57  Aligned_cols=68  Identities=13%  Similarity=-0.038  Sum_probs=47.9

Q ss_pred             hcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------C
Q 030823           87 DCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------L  157 (171)
Q Consensus        87 ~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f  157 (171)
                      .+-++...|+|||+-+|.+++.+.+.. ....|+++|+-|-             .+-.++.++.+|...-+        +
T Consensus        41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~-------------~~~~~V~~iq~d~~~~~~~~~l~~~l  107 (205)
T COG0293          41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM-------------KPIPGVIFLQGDITDEDTLEKLLEAL  107 (205)
T ss_pred             CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc-------------ccCCCceEEeeeccCccHHHHHHHHc
Confidence            345667999999999999999887643 3346999999541             12234777888765442        3


Q ss_pred             CCCccceEEE
Q 030823          158 KERYACRFFV  167 (171)
Q Consensus       158 ~~~sfDlV~s  167 (171)
                      ....+|+|+|
T Consensus       108 ~~~~~DvV~s  117 (205)
T COG0293         108 GGAPVDVVLS  117 (205)
T ss_pred             CCCCcceEEe
Confidence            3445799986

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=96.44  E-value=0.013  Score=51.45  Aligned_cols=72  Identities=14%  Similarity=0.058  Sum_probs=55.2

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCC-C---CCCCccce
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFL-P---LKERYACR  164 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~L-P---f~~~sfDl  164 (171)
                      ..+|||+=|=||.++.+.+.. ...+|+.||+|...|+.|++...   ..++   ...|+++|+-.+ .   -....||+
T Consensus       218 GkrvLNlFsYTGgfSv~Aa~g-GA~~vt~VD~S~~al~~a~~N~~---LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDl  293 (393)
T COG1092         218 GKRVLNLFSYTGGFSVHAALG-GASEVTSVDLSKRALEWARENAE---LNGLDGDRHRFIVGDVFKWLRKAERRGEKFDL  293 (393)
T ss_pred             CCeEEEecccCcHHHHHHHhc-CCCceEEEeccHHHHHHHHHHHH---hcCCCccceeeehhhHHHHHHHHHhcCCcccE
Confidence            688999999999999888873 34599999999999999987442   2332   467899997543 2   23459999


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus       294 Iil  296 (393)
T COG1092         294 IIL  296 (393)
T ss_pred             EEE
Confidence            985

>TIGR00006 S-adenosyl-methyltransferase MraW

Probab=96.39  E-value=0.02  Score=48.66  Aligned_cols=75  Identities=11%  Similarity=0.008  Sum_probs=55.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfDl  164 (171)
                      .+...++|.=||.|..+..+.+..+.++|+|+|.+++++..+++...   ...-++.++.++...++     ...+++|.
T Consensus        19 ~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~---~~~~R~~~i~~nF~~l~~~l~~~~~~~vDg   95 (305)
T TIGR00006        19 KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLS---DFEGRVVLIHDNFANFFEHLDELLVTKIDG   95 (305)
T ss_pred             CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHh---hcCCcEEEEeCCHHHHHHHHHhcCCCcccE
Confidence            35578999999999999999876545899999999999999987542   11225667777666543     23367888


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus        96 Il~   98 (305)
T TIGR00006        96 ILV   98 (305)
T ss_pred             EEE
Confidence            764

Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.

>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]

Probab=96.36  E-value=0.016  Score=51.88  Aligned_cols=74  Identities=16%  Similarity=0.106  Sum_probs=58.8

Q ss_pred             cCCC-eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFP-TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~-~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+.. ++|-+|||.-.+..++-.. ....|+-+|+|+-.++......   +.......+...|+..+.|+++|||+|+-
T Consensus        46 ~p~~~~~l~lGCGNS~l~e~ly~~-G~~dI~~iD~S~V~V~~m~~~~---~~~~~~~~~~~~d~~~l~fedESFdiVId  120 (482)
T KOG2352|consen   46 SPSDFKILQLGCGNSELSEHLYKN-GFEDITNIDSSSVVVAAMQVRN---AKERPEMQMVEMDMDQLVFEDESFDIVID  120 (482)
T ss_pred             chhhceeEeecCCCCHHHHHHHhc-CCCCceeccccHHHHHHHHhcc---ccCCcceEEEEecchhccCCCcceeEEEe
Confidence            3445 8999999999999988764 4679999999998888875422   11223577889999999999999999974

>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]

Probab=96.25  E-value=0.014  Score=50.95  Aligned_cols=78  Identities=18%  Similarity=0.134  Sum_probs=54.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh--hhh---ccCCCceeEEEccCCCCC-CCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ--QDA---HNDNIETCFVVGDEEFLP-LKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~--~~~---~~~~~~~~~~~~D~e~LP-f~~~sfD  163 (171)
                      +...+||-+|.|.|.-.+.|.+....++|+.+|+.|+|++-++...  ...   ...++.++.+..|+.++- -..+.||
T Consensus       288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD  367 (508)
T COG4262         288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFD  367 (508)
T ss_pred             cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhccccc
Confidence            4457899999999999999998655899999999999999986211  000   112334555666655442 3346888


Q ss_pred             eEEE
Q 030823          164 RFFV  167 (171)
Q Consensus       164 lV~s  167 (171)
                      .|+.
T Consensus       368 ~vIV  371 (508)
T COG4262         368 VVIV  371 (508)
T ss_pred             EEEE
Confidence            8875

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=96.25  E-value=0.013  Score=49.40  Aligned_cols=75  Identities=17%  Similarity=0.094  Sum_probs=50.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCC-CC--CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEF-LP--LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~-LP--f~~~sfDlV~  166 (171)
                      ...+|||+=|-||.++...+. +...+|+.||.|...|+.+++...- +.-. -.+.|+++|... +.  -..+.||+|+
T Consensus       123 ~gkrvLnlFsYTGgfsv~Aa~-gGA~~v~~VD~S~~al~~a~~N~~l-Ng~~~~~~~~~~~Dvf~~l~~~~~~~~fD~II  200 (286)
T PF10672_consen  123 KGKRVLNLFSYTGGFSVAAAA-GGAKEVVSVDSSKRALEWAKENAAL-NGLDLDRHRFIQGDVFKFLKRLKKGGRFDLII  200 (286)
T ss_dssp             TTCEEEEET-TTTHHHHHHHH-TTESEEEEEES-HHHHHHHHHHHHH-TT-CCTCEEEEES-HHHHHHHHHHTT-EEEEE
T ss_pred             CCCceEEecCCCCHHHHHHHH-CCCCEEEEEeCCHHHHHHHHHHHHH-cCCCccceEEEecCHHHHHHHHhcCCCCCEEE
Confidence            357999999999999987665 3456899999999999999874321 1111 246788888653 22  1357999998


Q ss_pred             E
Q 030823          167 V  167 (171)
Q Consensus       167 s  167 (171)
                      .
T Consensus       201 l  201 (286)
T PF10672_consen  201 L  201 (286)
T ss_dssp             E
T ss_pred             E
Confidence            6

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase

Probab=96.23  E-value=0.015  Score=50.79  Aligned_cols=72  Identities=7%  Similarity=-0.051  Sum_probs=52.8

Q ss_pred             CeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC-CCCCccceEEE
Q 030823           93 PTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP-LKERYACRFFV  167 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP-f~~~sfDlV~s  167 (171)
                      .+|||+-||+|..+..++.+. ...+|+++|++++.++..++...   ..+. ++..+.+|+..+- -..+.||+|..
T Consensus        46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~---~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl  120 (374)
T TIGR00308        46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVE---YNSVENIEVPNEDAANVLRYRNRKFHVIDI  120 (374)
T ss_pred             CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHH---HhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence            589999999999999998653 45799999999999999876432   1222 3566777776542 22367999875

This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.

>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length

Probab=96.19  E-value=0.09  Score=44.56  Aligned_cols=77  Identities=10%  Similarity=-0.041  Sum_probs=54.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeEEEccCCCC---CCCCCccc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCFVVGDEEFL---PLKERYAC  163 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~--~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~-~~~~~~D~e~L---Pf~~~sfD  163 (171)
                      ..-+||||.||.|..........+  ..+|...|.|+.-++..++...   ..+. + +.|..+|+...   .--+-..+
T Consensus       135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~---~~gL~~i~~f~~~dAfd~~~l~~l~p~P~  211 (311)
T PF12147_consen  135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIA---ERGLEDIARFEQGDAFDRDSLAALDPAPT  211 (311)
T ss_pred             CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHH---HcCCccceEEEecCCCCHhHhhccCCCCC
Confidence            457899999999977655544333  3699999999999999987653   3444 3 37888876532   22244678


Q ss_pred             eEEEecc
Q 030823          164 RFFVLAL  170 (171)
Q Consensus       164 lV~s~~~  170 (171)
                      ++++++|
T Consensus       212 l~iVsGL  218 (311)
T PF12147_consen  212 LAIVSGL  218 (311)
T ss_pred             EEEEecc
Confidence            8888875

It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.

>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function

Probab=96.16  E-value=0.027  Score=46.02  Aligned_cols=58  Identities=10%  Similarity=-0.017  Sum_probs=37.1

Q ss_pred             HHHHHHHHHhcccC--CCeEEEEcCCCcHHHHHHhhcC--------CCcEEEEEeCCHHHHHHHHHhh
Q 030823           78 AENLLDRLEDCRKT--FPTALCLGGSLEAVRRLLRGRG--------GIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        78 a~~l~~rL~~i~~~--~~~vLDlGcGtG~l~~~L~~~~--------~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      |..+++.......+  .-+|+|+|+|+|.++..+....        ..-+++.+|+|+.+.+.-++..
T Consensus         3 a~~~~~~~~~~~~p~~~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L   70 (252)
T PF02636_consen    3 ARWIAQMWEQLGRPSEPLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERL   70 (252)
T ss_dssp             HHHHHHHHHHCT--SS-EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHC
T ss_pred             HHHHHHHHHHcCCCCcCcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHh
Confidence            33444444444322  3689999999999988875411        1248999999999988876654

; PDB: 4F3N_A 1ZKD_B.

>COG2521 Predicted archaeal methyltransferase [General function prediction only]

Probab=96.15  E-value=0.0031  Score=51.87  Aligned_cols=93  Identities=17%  Similarity=0.087  Sum_probs=63.6

Q ss_pred             CChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030823           69 PNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF  147 (171)
Q Consensus        69 ~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~  147 (171)
                      ..++|.|..+.-     ..+ .++..+|||.+.|-|..+..-.+++ .-+|+-++-.+..|+.|.-..-+-....+.+..
T Consensus       116 ~tdP~~Dt~~Kv-----~~V~~~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~i  189 (287)
T COG2521         116 GTDPLEDTLAKV-----ELVKVKRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKI  189 (287)
T ss_pred             CcCcHHHHHhhh-----heeccccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEE
Confidence            356666665532     222 2357899999999999998888754 239999999999999885211000001123566


Q ss_pred             EEccCCCC--CCCCCccceEEE
Q 030823          148 VVGDEEFL--PLKERYACRFFV  167 (171)
Q Consensus       148 ~~~D~e~L--Pf~~~sfDlV~s  167 (171)
                      +.||+..+  .|+|+|||+|+.
T Consensus       190 ilGD~~e~V~~~~D~sfDaIiH  211 (287)
T COG2521         190 ILGDAYEVVKDFDDESFDAIIH  211 (287)
T ss_pred             ecccHHHHHhcCCccccceEee
Confidence            88997655  599999999974

>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]

Probab=96.14  E-value=0.00057  Score=55.34  Aligned_cols=43  Identities=19%  Similarity=0.149  Sum_probs=37.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      ...-++||+|+|.|.++..+++.  ..+|++.++|..|.++.+.+
T Consensus       111 ~~~~~lLDlGAGdGeit~~m~p~--feevyATElS~tMr~rL~kk  153 (288)
T KOG3987|consen  111 QEPVTLLDLGAGDGEITLRMAPT--FEEVYATELSWTMRDRLKKK  153 (288)
T ss_pred             CCCeeEEeccCCCcchhhhhcch--HHHHHHHHhhHHHHHHHhhc
Confidence            34568999999999999999984  47899999999999998753

>COG2520 Predicted methyltransferase [General function prediction only]

Probab=96.11  E-value=0.026  Score=48.67  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=62.0

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+..+|+|+=+|-|.++..++..+... |+++|+.|..+...++...   ..++  .+..++||....+..-+.+|-|+
T Consensus       186 v~~GE~V~DmFAGVGpfsi~~Ak~g~~~-V~A~diNP~A~~~L~eNi~---LN~v~~~v~~i~gD~rev~~~~~~aDrIi  261 (341)
T COG2520         186 VKEGETVLDMFAGVGPFSIPIAKKGRPK-VYAIDINPDAVEYLKENIR---LNKVEGRVEPILGDAREVAPELGVADRII  261 (341)
T ss_pred             hcCCCEEEEccCCcccchhhhhhcCCce-EEEEecCHHHHHHHHHHHH---hcCccceeeEEeccHHHhhhccccCCEEE
Confidence            3457999999999999999998855433 9999999999988876432   2333  26789999998887669999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++..
T Consensus       262 m~~p  265 (341)
T COG2520         262 MGLP  265 (341)
T ss_pred             eCCC
Confidence            8754

>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2

Probab=95.93  E-value=0.059  Score=45.21  Aligned_cols=79  Identities=11%  Similarity=0.084  Sum_probs=45.1

Q ss_pred             CCeEEEEcCCCcHHHHHH-hh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           92 FPTALCLGGSLEAVRRLL-RG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L-~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +.+|+-||||+=-++..+ ++ .+....|+++|.+++.++.+++.......-+..+.|+.+|....+..-..||+|+..|
T Consensus       121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa  200 (276)
T PF03059_consen  121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA  200 (276)
T ss_dssp             --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred             cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence            459999999987665544 33 2344689999999999999987542100113357889999888876668999999887


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       201 l  201 (276)
T PF03059_consen  201 L  201 (276)
T ss_dssp             T
T ss_pred             h
Confidence            6

5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.

>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes

Probab=95.88  E-value=0.035  Score=47.09  Aligned_cols=74  Identities=11%  Similarity=0.014  Sum_probs=42.4

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEcc-CCC----CCCCCCccceE
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGD-EEF----LPLKERYACRF  165 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D-~e~----LPf~~~sfDlV  165 (171)
                      -++||||||..-+...|..+....+++|.|+++..++.|++....  +++.  .+..+... ...    +-.+++.||+.
T Consensus       104 v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~--N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dft  181 (299)
T PF05971_consen  104 VRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVER--NPNLESRIELRKQKNPDNIFDGIIQPNERFDFT  181 (299)
T ss_dssp             -EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHH--T-T-TTTEEEEE--ST-SSTTTSTT--S-EEEE
T ss_pred             eEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHh--ccccccceEEEEcCCccccchhhhcccceeeEE
Confidence            479999999998877775433458999999999999999875431  2233  24333322 222    12235789999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +||
T Consensus       182 mCN  184 (299)
T PF05971_consen  182 MCN  184 (299)
T ss_dssp             EE-
T ss_pred             ecC
Confidence            886

The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.

>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=95.82  E-value=0.066  Score=43.51  Aligned_cols=79  Identities=10%  Similarity=-0.005  Sum_probs=58.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCC-ccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKER-YACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~-sfDlV~s~  168 (171)
                      +.+..+.|+||=-+.+...|.+..+...+++.|+++.-++.|.+.... ......+....+|. ..++..+ .+|+|+..
T Consensus        15 ~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~-~~l~~~i~vr~~dg-l~~l~~~d~~d~ivIA   92 (226)
T COG2384          15 KQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKK-NNLSERIDVRLGDG-LAVLELEDEIDVIVIA   92 (226)
T ss_pred             HcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHh-cCCcceEEEeccCC-ccccCccCCcCEEEEe
Confidence            344569999999999999999888889999999999999999764321 01111344455676 4456555 89999987


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      ++
T Consensus        93 GM   94 (226)
T COG2384          93 GM   94 (226)
T ss_pred             CC
Confidence            65

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=95.60  E-value=0.02  Score=45.88  Aligned_cols=73  Identities=14%  Similarity=0.010  Sum_probs=51.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ...+|||+|+|+|..+..-...+ ...|+..|+.+..+...+-   |+...++.+.++..|.-.   .+..||+|+...|
T Consensus        79 rgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~l---Na~angv~i~~~~~d~~g---~~~~~Dl~LagDl  151 (218)
T COG3897          79 RGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRL---NAAANGVSILFTHADLIG---SPPAFDLLLAGDL  151 (218)
T ss_pred             ccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhc---chhhccceeEEeeccccC---CCcceeEEEeece
Confidence            34789999999999887776643 4689999999877776542   112345566666655433   6789999987654

>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]

Probab=95.59  E-value=0.086  Score=45.58  Aligned_cols=91  Identities=15%  Similarity=0.021  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV  148 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~--~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~  148 (171)
                      +++++.++.. ..+.+ ..+..+|||++++.|.=+.++++...  ...|+++|.++.-+...++...   .-++ ++..+
T Consensus       139 ~vQd~sS~l~-a~~L~-p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~---RlG~~nv~~~  213 (355)
T COG0144         139 YVQDEASQLP-ALVLD-PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLK---RLGVRNVIVV  213 (355)
T ss_pred             EEcCHHHHHH-HHHcC-CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHH---HcCCCceEEE
Confidence            3444444333 33332 35679999999999988888876432  2457999999998888776543   3444 34567


Q ss_pred             EccCCCCC---CCCCccceEEE
Q 030823          149 VGDEEFLP---LKERYACRFFV  167 (171)
Q Consensus       149 ~~D~e~LP---f~~~sfDlV~s  167 (171)
                      ..|...++   ...+.||.|+.
T Consensus       214 ~~d~~~~~~~~~~~~~fD~iLl  235 (355)
T COG0144         214 NKDARRLAELLPGGEKFDRILL  235 (355)
T ss_pred             ecccccccccccccCcCcEEEE
Confidence            77776654   22235999985

>KOG2730 consensus Methylase [General function prediction only]

Probab=95.54  E-value=0.039  Score=45.13  Aligned_cols=91  Identities=13%  Similarity=0.117  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEE
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFV  148 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~  148 (171)
                      ..-.+.++..++.+..... ..+.|+|.-||.|..+..++-++  ..|+++|+++.-+..|+...+   .-|+  .++|+
T Consensus        75 svTpe~ia~~iA~~v~~~~-~~~~iidaf~g~gGntiqfa~~~--~~VisIdiDPikIa~AkhNae---iYGI~~rItFI  148 (263)
T KOG2730|consen   75 SVTPEKIAEHIANRVVACM-NAEVIVDAFCGVGGNTIQFALQG--PYVIAIDIDPVKIACARHNAE---VYGVPDRITFI  148 (263)
T ss_pred             EeccHHHHHHHHHHHHHhc-CcchhhhhhhcCCchHHHHHHhC--CeEEEEeccHHHHHHHhccce---eecCCceeEEE
Confidence            3444566666666655544 45788998888888877777644  689999999999999875332   2333  68899


Q ss_pred             EccCC----CCCCCCCccceEEE
Q 030823          149 VGDEE----FLPLKERYACRFFV  167 (171)
Q Consensus       149 ~~D~e----~LPf~~~sfDlV~s  167 (171)
                      +||.-    .+-|...-+|+|+.
T Consensus       149 ~GD~ld~~~~lq~~K~~~~~vf~  171 (263)
T KOG2730|consen  149 CGDFLDLASKLKADKIKYDCVFL  171 (263)
T ss_pred             echHHHHHHHHhhhhheeeeeec
Confidence            99853    33455555666654

>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]

Probab=95.43  E-value=0.11  Score=41.18  Aligned_cols=75  Identities=13%  Similarity=0.029  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-CCCC--CccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKE--RYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-Pf~~--~sfDlV~s  167 (171)
                      ...++||+=+|+|.++..-..++ ...++.+|.+.+.+...++.... .....+...+..|+... +-..  +.||+|+.
T Consensus        43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~-l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl  120 (187)
T COG0742          43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKA-LGLEGEARVLRNDALRALKQLGTREPFDLVFL  120 (187)
T ss_pred             CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHH-hCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence            45899999999999987776654 57999999999999998764321 11113455566776633 2222  35999985

>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins

Probab=95.36  E-value=0.039  Score=46.18  Aligned_cols=94  Identities=16%  Similarity=0.039  Sum_probs=61.5

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF  147 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~  147 (171)
                      +=++++..+......|.  ..+...|||++++.|.=+.++++.. ..+.|+++|+++.-+...++...   ..+. ++..
T Consensus        66 ~~~vQd~sS~l~~~~L~--~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~---r~g~~~v~~  140 (283)
T PF01189_consen   66 LFYVQDESSQLVALALD--PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLK---RLGVFNVIV  140 (283)
T ss_dssp             SEEEHHHHHHHHHHHHT--TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHH---HTT-SSEEE
T ss_pred             cEEeccccccccccccc--ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHH---hcCCceEEE
Confidence            33445555444443332  3567889999999998888887643 36799999999999988876543   2444 3444


Q ss_pred             EEccCCCC-C-CCCCccceEEEe
Q 030823          148 VVGDEEFL-P-LKERYACRFFVL  168 (171)
Q Consensus       148 ~~~D~e~L-P-f~~~sfDlV~s~  168 (171)
                      +..|...+ + .....||.|+.-
T Consensus       141 ~~~D~~~~~~~~~~~~fd~VlvD  163 (283)
T PF01189_consen  141 INADARKLDPKKPESKFDRVLVD  163 (283)
T ss_dssp             EESHHHHHHHHHHTTTEEEEEEE
T ss_pred             EeeccccccccccccccchhhcC
Confidence            54666555 2 233469999863

In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....

>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]

Probab=95.25  E-value=0.026  Score=45.11  Aligned_cols=35  Identities=14%  Similarity=0.015  Sum_probs=30.2

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeC
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDT  123 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~  123 (171)
                      .++..+|||+||.+|.+++...++. |.+.|.|+|+
T Consensus        67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDl  102 (232)
T KOG4589|consen   67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDL  102 (232)
T ss_pred             cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEee
Confidence            4567999999999999998876644 7899999998

>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]

Probab=95.22  E-value=0.12  Score=43.59  Aligned_cols=75  Identities=11%  Similarity=0.010  Sum_probs=57.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCC--CCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPL--KERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf--~~~sfDl  164 (171)
                      ++..+|++-|.|+|.++..+++. ++.++++-+|..+...+.|.+...   ..++  ++++++-|.....|  ++..+|.
T Consensus       104 ~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr---~hgi~~~vt~~hrDVc~~GF~~ks~~aDa  180 (314)
T KOG2915|consen  104 RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFR---EHGIGDNVTVTHRDVCGSGFLIKSLKADA  180 (314)
T ss_pred             CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHH---HhCCCcceEEEEeecccCCccccccccce
Confidence            57899999999999999999863 367899999999988888877653   2333  57777777665544  4678888


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus       181 VFL  183 (314)
T KOG2915|consen  181 VFL  183 (314)
T ss_pred             EEE
Confidence            874

>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) []

Probab=95.16  E-value=0.035  Score=40.33  Aligned_cols=32  Identities=19%  Similarity=0.157  Sum_probs=25.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT  123 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~  123 (171)
                      .++....|||||.|.+...|...+  -.-+|+|.
T Consensus        57 ~~~~~FVDlGCGNGLLV~IL~~EG--y~G~GiD~   88 (112)
T PF07757_consen   57 QKFQGFVDLGCGNGLLVYILNSEG--YPGWGIDA   88 (112)
T ss_pred             CCCCceEEccCCchHHHHHHHhCC--CCcccccc
Confidence            357789999999999998887643  46788887

; GO: 0008168 methyltransferase activity

>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]

Probab=95.16  E-value=0.033  Score=48.45  Aligned_cols=78  Identities=17%  Similarity=0.089  Sum_probs=59.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+...++|+|||-|-....+.. +....++|+|.++.-+.++........... ...++++|.-..||+++.||.+.++.
T Consensus       109 ~~~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~-k~~~~~~~~~~~~fedn~fd~v~~ld  186 (364)
T KOG1269|consen  109 FPGSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDN-KCNFVVADFGKMPFEDNTFDGVRFLE  186 (364)
T ss_pred             cccccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhh-hcceehhhhhcCCCCccccCcEEEEe
Confidence            4455799999999999988875 345799999999999988876543211111 23348899999999999999998764

>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]

Probab=95.03  E-value=0.17  Score=41.22  Aligned_cols=89  Identities=19%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             hHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCH----HHHHHHHHhhhhhccCCCc
Q 030823           71 DSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSY----DMLKLCKDAQQDAHNDNIE  144 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~----~mL~~a~~~~~~~~~~~~~  144 (171)
                      ++.+-.++..+..-+..+ -.+..+||.+|..+|....++.. -++.+.|++++.|+    +++..|++        ..|
T Consensus        52 ~P~RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~--------R~N  123 (229)
T PF01269_consen   52 NPFRSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKK--------RPN  123 (229)
T ss_dssp             -TTT-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH--------STT
T ss_pred             CchhhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhcc--------CCc
Confidence            444445555554444433 24668999999999988888864 23467999999999    45555543        345


Q ss_pred             eeEEEccCCCC---CCCCCccceEEE
Q 030823          145 TCFVVGDEEFL---PLKERYACRFFV  167 (171)
Q Consensus       145 ~~~~~~D~e~L---Pf~~~sfDlV~s  167 (171)
                      +..+..|+..-   ..--+.+|+|++
T Consensus       124 IiPIl~DAr~P~~Y~~lv~~VDvI~~  149 (229)
T PF01269_consen  124 IIPILEDARHPEKYRMLVEMVDVIFQ  149 (229)
T ss_dssp             EEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred             eeeeeccCCChHHhhcccccccEEEe
Confidence            77788887632   111358898876

It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....

>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes

Probab=94.69  E-value=0.087  Score=42.92  Aligned_cols=59  Identities=17%  Similarity=0.115  Sum_probs=39.7

Q ss_pred             HHHHHHHHHHHhc--ccCCCeEEEEcCCCcHHHHHH--hhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823           76 AVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLL--RGRGGIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        76 ~va~~l~~rL~~i--~~~~~~vLDlGcGtG~l~~~L--~~~~~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      ++|.++.+|-...  ...+-++-|-+||+|.+.-.+  ........|++.|+++++|+.|++.
T Consensus        34 RLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kN   96 (246)
T PF11599_consen   34 RLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKN   96 (246)
T ss_dssp             HHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHh
Confidence            4455555554322  344568899999999987655  3444678999999999999998753

This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.

>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]

Probab=94.64  E-value=0.15  Score=42.52  Aligned_cols=43  Identities=16%  Similarity=0.098  Sum_probs=33.5

Q ss_pred             CCCeEEEEcCCCc----HHHHHHhhcCC-----CcEEEEEeCCHHHHHHHHH
Q 030823           91 TFPTALCLGGSLE----AVRRLLRGRGG-----IEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        91 ~~~~vLDlGcGtG----~l~~~L~~~~~-----~~~v~gvD~S~~mL~~a~~  133 (171)
                      ..-+|+-.||+||    .++..|.+..+     .-+|++.|+|..+|+.|++
T Consensus        96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~  147 (268)
T COG1352          96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARA  147 (268)
T ss_pred             CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhc
Confidence            3578999999999    45555555432     3489999999999999975

>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=94.61  E-value=0.19  Score=41.09  Aligned_cols=76  Identities=14%  Similarity=0.030  Sum_probs=55.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCC-----CCCCc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLP-----LKERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~LP-----f~~~s  161 (171)
                      ...++||||.=||.-+..++..- ..++|+++|+.++-.+.+.+..+   ..++  ++.++++++ +.|+     .+.++
T Consensus        73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k---~agv~~KI~~i~g~a~esLd~l~~~~~~~t  149 (237)
T KOG1663|consen   73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVK---LAGVDHKITFIEGPALESLDELLADGESGT  149 (237)
T ss_pred             CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHH---hccccceeeeeecchhhhHHHHHhcCCCCc
Confidence            45789999999998777665432 46899999999999998866442   3443  578888875 3332     45799


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||.++.-+
T Consensus       150 fDfaFvDa  157 (237)
T KOG1663|consen  150 FDFAFVDA  157 (237)
T ss_pred             eeEEEEcc
Confidence            99998643

>COG1565 Uncharacterized conserved protein [Function unknown]

Probab=94.34  E-value=0.23  Score=43.19  Aligned_cols=65  Identities=11%  Similarity=0.096  Sum_probs=46.3

Q ss_pred             hHHHHHHHHHHHHHHHhcccC-CCeEEEEcCCCcHHHHHHhhc--------CCCcEEEEEeCCHHHHHHHHHhh
Q 030823           71 DSFVDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR--------GGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~-~~~vLDlGcGtG~l~~~L~~~--------~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+-+.++..++.-++.+..+ .-.++++|.|+|.+...+.+.        +...++..|++|++...+=++..
T Consensus        56 ~lFGella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L  129 (370)
T COG1565          56 QLFGELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETL  129 (370)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHH
Confidence            344455666666666665554 456999999999998777542        23569999999999988765543

>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology

Probab=94.26  E-value=0.15  Score=42.45  Aligned_cols=66  Identities=14%  Similarity=-0.015  Sum_probs=48.9

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC--CCccceEEEe
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK--ERYACRFFVL  168 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~--~~sfDlV~s~  168 (171)
                      +++|+-||.|.++..+...+ ...++++|+++..++..+..     .+.   ..+.+|...+...  ...+|+|+..
T Consensus         2 ~v~dLFsG~Gg~~~gl~~~G-~~~v~a~e~~~~a~~~~~~N-----~~~---~~~~~Di~~~~~~~~~~~~D~l~~g   69 (275)
T cd00315           2 RVIDLFAGIGGFRLGLEKAG-FEIVAANEIDKSAAETYEAN-----FPN---KLIEGDITKIDEKDFIPDIDLLTGG   69 (275)
T ss_pred             cEEEEccCcchHHHHHHHcC-CEEEEEEeCCHHHHHHHHHh-----CCC---CCccCccccCchhhcCCCCCEEEeC
Confidence            58999999999998888754 67889999999998887642     122   1456777766532  3579998864

Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.

>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria

Probab=93.93  E-value=0.27  Score=41.95  Aligned_cols=74  Identities=14%  Similarity=-0.010  Sum_probs=48.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----C-CCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----L-KERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f-~~~sfD  163 (171)
                      .+...++|.=-|.|-.+..+.+..+..+|+|+|-.+++++.+++...   .....+.++.++...++     . ..+.+|
T Consensus        19 ~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~---~~~~r~~~~~~~F~~l~~~l~~~~~~~~~d   95 (310)
T PF01795_consen   19 KPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK---KFDDRFIFIHGNFSNLDEYLKELNGINKVD   95 (310)
T ss_dssp             -TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC---CCCTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred             CCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh---hccceEEEEeccHHHHHHHHHHccCCCccC
Confidence            45678999999999999999987666999999999999999986432   12335666776655442     2 334666


Q ss_pred             eEE
Q 030823          164 RFF  166 (171)
Q Consensus       164 lV~  166 (171)
                      -|+
T Consensus        96 giL   98 (310)
T PF01795_consen   96 GIL   98 (310)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.

>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.88  E-value=0.062  Score=44.17  Aligned_cols=42  Identities=21%  Similarity=0.275  Sum_probs=35.1

Q ss_pred             cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823           88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL  130 (171)
Q Consensus        88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~  130 (171)
                      +..+...+||+|+.||-++..+.+++ ..+|+++|.....|.-
T Consensus        76 l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~  117 (245)
T COG1189          76 LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHW  117 (245)
T ss_pred             cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCH
Confidence            45567899999999999999999864 5799999999866644

>KOG3115 consensus Methyltransferase-like protein [General function prediction only]

Probab=93.64  E-value=0.089  Score=42.63  Aligned_cols=44  Identities=11%  Similarity=-0.009  Sum_probs=36.2

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ  136 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~  136 (171)
                      -...|||||-|.+...|.+.+|..-|+|+++=-..-+..++++.
T Consensus        62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~  105 (249)
T KOG3115|consen   62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQ  105 (249)
T ss_pred             ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHH
Confidence            45799999999999999998999999999997666666555443

>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]

Probab=93.21  E-value=0.42  Score=38.70  Aligned_cols=97  Identities=12%  Similarity=0.047  Sum_probs=62.5

Q ss_pred             CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      |+.-++.+...|..+..-|..+ .++..+||-||..+|....++..--+.+.+++++.|+.+....-..+    ....++
T Consensus        51 YR~Wnp~RSKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a----~~R~Ni  126 (231)
T COG1889          51 YREWNPRRSKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVA----EKRPNI  126 (231)
T ss_pred             eeeeCcchhHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHH----HhCCCc
Confidence            3334555556666665555533 35678999999999999888876444679999999987665533222    123456


Q ss_pred             eEEEccCCCC---CCCCCccceEEE
Q 030823          146 CFVVGDEEFL---PLKERYACRFFV  167 (171)
Q Consensus       146 ~~~~~D~e~L---Pf~~~sfDlV~s  167 (171)
                      ..+.+|+..-   -+-=+.+|+|+.
T Consensus       127 ~PIL~DA~~P~~Y~~~Ve~VDviy~  151 (231)
T COG1889         127 IPILEDARKPEKYRHLVEKVDVIYQ  151 (231)
T ss_pred             eeeecccCCcHHhhhhcccccEEEE
Confidence            6677776532   122355787764

>PLN02232 ubiquinone biosynthesis methyltransferase

Probab=93.02  E-value=0.081  Score=40.26  Aligned_cols=26  Identities=15%  Similarity=0.015  Sum_probs=23.5

Q ss_pred             ceeEEEccCCCCCCCCCccceEEEec
Q 030823          144 ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       144 ~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++.|+++|++.+|+++++||+|++..
T Consensus        27 ~i~~~~~d~~~lp~~~~~fD~v~~~~   52 (160)
T PLN02232         27 CIEWIEGDAIDLPFDDCEFDAVTMGY   52 (160)
T ss_pred             ceEEEEechhhCCCCCCCeeEEEecc
Confidence            47789999999999999999999864

>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases

Probab=92.97  E-value=0.45  Score=36.94  Aligned_cols=52  Identities=12%  Similarity=0.077  Sum_probs=37.1

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK  132 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~  132 (171)
                      ++.++++..   ...+.+.|||.=||+|..+..-.+.+  .+.+|+|++++..+.|.
T Consensus       179 ~l~~~lI~~---~t~~gdiVlDpF~GSGTT~~aa~~l~--R~~ig~E~~~~y~~~a~  230 (231)
T PF01555_consen  179 ELIERLIKA---STNPGDIVLDPFAGSGTTAVAAEELG--RRYIGIEIDEEYCEIAK  230 (231)
T ss_dssp             HHHHHHHHH---HS-TT-EEEETT-TTTHHHHHHHHTT---EEEEEESSHHHHHHHH
T ss_pred             HHHHHHHHh---hhccceeeehhhhccChHHHHHHHcC--CeEEEEeCCHHHHHHhc
Confidence            444444432   34577999999999999988777643  68999999999999885

In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....

>PRK10742 putative methyltransferase; Provisional

Probab=92.94  E-value=0.55  Score=38.90  Aligned_cols=73  Identities=10%  Similarity=0.027  Sum_probs=49.3

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh-cc----CC--CceeEEEccCCCC-CCCCCccce
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HN----DN--IETCFVVGDEEFL-PLKERYACR  164 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~-~~----~~--~~~~~~~~D~e~L-Pf~~~sfDl  164 (171)
                      ++|||+=+|+|..+..++.++  .+|+++|-++.+....++-.... ..    ..  -++..+.+|...+ .-..++||+
T Consensus        90 p~VLD~TAGlG~Da~~las~G--~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDV  167 (250)
T PRK10742         90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (250)
T ss_pred             CEEEECCCCccHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcE
Confidence            489999999999999998854  57999999998877765433211 00    11  1355566775433 322348999


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus       168 VYl  170 (250)
T PRK10742        168 VYL  170 (250)
T ss_pred             EEE
Confidence            984

>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]

Probab=92.73  E-value=0.42  Score=39.58  Aligned_cols=98  Identities=12%  Similarity=-0.008  Sum_probs=56.2

Q ss_pred             CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc--e
Q 030823           68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE--T  145 (171)
Q Consensus        68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~--~  145 (171)
                      +..+|++ .+++.|.+--..+..+.-++||||.|.--+...+-.+......+|.|+++..+..|+....  .+++.+  +
T Consensus        56 gRAdYih-~laDLL~s~~g~~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~--~N~~l~~~I  132 (292)
T COG3129          56 GRADYIH-HLADLLASTSGQIPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIIS--ANPGLERAI  132 (292)
T ss_pred             ChhHHHH-HHHHHHHhcCCCCCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHHHHH--cCcchhhhe
Confidence            4456655 3333332211112334568999999988777766544445799999999999999976442  233332  2


Q ss_pred             eEEE-ccCCCC-C---CCCCccceEEEe
Q 030823          146 CFVV-GDEEFL-P---LKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~-~D~e~L-P---f~~~sfDlV~s~  168 (171)
                      .... -|...+ +   -..+.||.++||
T Consensus       133 ~lr~qk~~~~if~giig~nE~yd~tlCN  160 (292)
T COG3129         133 RLRRQKDSDAIFNGIIGKNERYDATLCN  160 (292)
T ss_pred             eEEeccCccccccccccccceeeeEecC
Confidence            2221 222221 1   125778887776

>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]

Probab=91.62  E-value=0.57  Score=42.09  Aligned_cols=43  Identities=12%  Similarity=0.116  Sum_probs=35.4

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      +-.+||||.|||.++-.-.+.+ ...|++++.=..|.+.|+..-
T Consensus        67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~arkI~  109 (636)
T KOG1501|consen   67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARKIM  109 (636)
T ss_pred             eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHHHH
Confidence            4568999999999987665544 578999999999999998643

>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]

Probab=90.69  E-value=1.7  Score=38.39  Aligned_cols=44  Identities=9%  Similarity=0.061  Sum_probs=36.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      .-+.++|+|.|-|++++.|.-.+ .-.|.++|-|+....+|+...
T Consensus       153 gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra~rLd  196 (476)
T KOG2651|consen  153 GIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERAQRLD  196 (476)
T ss_pred             CCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHHHHHH
Confidence            44789999999999999997533 359999999998888887543

>PHA01634 hypothetical protein

Probab=90.38  E-value=2  Score=32.50  Aligned_cols=61  Identities=10%  Similarity=-0.000  Sum_probs=44.6

Q ss_pred             CChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           69 PNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        69 ~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      .-+|+++..-+.     ..+.....+|+|||.+-|.-+..+.-+ ....|+++++++.+.+..++.+
T Consensus        11 ~c~ywrey~~~Y-----~~idvk~KtV~dIGA~iGdSaiYF~l~-GAK~Vva~E~~~kl~k~~een~   71 (156)
T PHA01634         11 ECDYWREYPHAY-----GMLNVYQRTIQIVGADCGSSALYFLLR-GASFVVQYEKEEKLRKKWEEVC   71 (156)
T ss_pred             cchHHHHHHHHh-----hheeecCCEEEEecCCccchhhHHhhc-CccEEEEeccCHHHHHHHHHHh
Confidence            345665554322     123345689999999999998888764 3579999999999999987643

>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT)

Probab=90.33  E-value=0.85  Score=38.17  Aligned_cols=41  Identities=20%  Similarity=0.126  Sum_probs=34.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK  132 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~  132 (171)
                      +...+||--|||.|.++-.++..+  -.+.|.|.|--|+-...
T Consensus        55 ~~~~~VLVPGsGLGRLa~Eia~~G--~~~~gnE~S~~Mll~s~   95 (270)
T PF07942_consen   55 RSKIRVLVPGSGLGRLAWEIAKLG--YAVQGNEFSYFMLLASN   95 (270)
T ss_pred             CCccEEEEcCCCcchHHHHHhhcc--ceEEEEEchHHHHHHHH
Confidence            345789999999999999999854  59999999999986653

This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].

>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]

Probab=90.32  E-value=1.4  Score=38.03  Aligned_cols=66  Identities=14%  Similarity=0.083  Sum_probs=45.3

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccceEEEec
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACRFFVLA  169 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s~~  169 (171)
                      +..++|+|.|.|.++..+...+  .+|-+++.....+..+....   . ++  +..+.+|+-. .|-.    |+|++-.
T Consensus       178 v~~avDvGgGiG~v~k~ll~~f--p~ik~infdlp~v~~~a~~~---~-~g--V~~v~gdmfq~~P~~----daI~mkW  244 (342)
T KOG3178|consen  178 VNVAVDVGGGIGRVLKNLLSKY--PHIKGINFDLPFVLAAAPYL---A-PG--VEHVAGDMFQDTPKG----DAIWMKW  244 (342)
T ss_pred             CceEEEcCCcHhHHHHHHHHhC--CCCceeecCHHHHHhhhhhh---c-CC--cceecccccccCCCc----CeEEEEe
Confidence            5789999999999999998744  46888888877776664321   1 23  5667777543 4432    3777643

>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=89.81  E-value=0.6  Score=38.76  Aligned_cols=41  Identities=20%  Similarity=0.102  Sum_probs=26.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC  131 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a  131 (171)
                      .+..++||||||+-.. ..|.-.....+|+..|.++.-++..
T Consensus        55 ~~g~~llDiGsGPtiy-~~lsa~~~f~~I~l~dy~~~N~~el   95 (256)
T PF01234_consen   55 VKGETLLDIGSGPTIY-QLLSACEWFEEIVLSDYSEQNREEL   95 (256)
T ss_dssp             S-EEEEEEES-TT--G-GGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred             cCCCEEEEeCCCcHHH-hhhhHHHhhcceEEeeccHhhHHHH
Confidence            3457899999999543 3443222457999999998776644

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....

>PRK11524 putative methyltransferase; Provisional

Probab=89.78  E-value=1.6  Score=36.38  Aligned_cols=45  Identities=9%  Similarity=-0.034  Sum_probs=38.2

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.|||.=||+|..+..-.+.  ..+.+|+|++++..+.|.++.
T Consensus       206 S~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~Rl  250 (284)
T PRK11524        206 SNPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLRRL  250 (284)
T ss_pred             CCCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHHHH
Confidence            467899999999999988777663  379999999999999998764

>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein

Probab=89.52  E-value=1.1  Score=36.47  Aligned_cols=57  Identities=14%  Similarity=-0.013  Sum_probs=36.9

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEEEec
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRFFVLA  169 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV~s~~  169 (171)
                      -++|||||=+......-.   +.-.|+.||+.+             ..+++    ...|.-..|+   +++.||+|+++=
T Consensus        53 lrlLEVGals~~N~~s~~---~~fdvt~IDLns-------------~~~~I----~qqDFm~rplp~~~~e~FdvIs~SL  112 (219)
T PF11968_consen   53 LRLLEVGALSTDNACSTS---GWFDVTRIDLNS-------------QHPGI----LQQDFMERPLPKNESEKFDVISLSL  112 (219)
T ss_pred             ceEEeecccCCCCccccc---CceeeEEeecCC-------------CCCCc----eeeccccCCCCCCcccceeEEEEEE
Confidence            589999998654433222   223599999964             12332    4566666665   478999998763

>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]

Probab=89.51  E-value=1.9  Score=38.89  Aligned_cols=94  Identities=11%  Similarity=-0.109  Sum_probs=58.6

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC---C-CcEEEEEeCCHHHHHHHHHhhhhhccCCCc-
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG---G-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIE-  144 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~---~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~-  144 (171)
                      .-|...+|.+.|+..+..  .+..+|.|-.||+|.+........   . ...++|.|..+.+...++-...   ..+++ 
T Consensus       167 EfyTP~~v~~liv~~l~~--~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~---lhgi~~  241 (489)
T COG0286         167 EFYTPREVSELIVELLDP--EPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLI---LHGIEG  241 (489)
T ss_pred             ccCChHHHHHHHHHHcCC--CCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHH---HhCCCc
Confidence            345556677777666553  344589999999998765554311   1 2568999999999999874221   22332 


Q ss_pred             -eeEEEccCCCCC-----CCCCccceEEEe
Q 030823          145 -TCFVVGDEEFLP-----LKERYACRFFVL  168 (171)
Q Consensus       145 -~~~~~~D~e~LP-----f~~~sfDlV~s~  168 (171)
                       +....+|--.-|     ...+.||.|++|
T Consensus       242 ~~~i~~~dtl~~~~~~~~~~~~~~D~viaN  271 (489)
T COG0286         242 DANIRHGDTLSNPKHDDKDDKGKFDFVIAN  271 (489)
T ss_pred             cccccccccccCCcccccCCccceeEEEeC
Confidence             233344433333     234679999886

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=89.19  E-value=1.4  Score=38.02  Aligned_cols=71  Identities=17%  Similarity=0.148  Sum_probs=46.2

Q ss_pred             cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc-cCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG-DEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~-D~e~LPf~~~sfDlV~s  167 (171)
                      ++...|+-+|+| -|+++..+++.-. .+|+++|.|++-++.|++.       +... ++.. |.+.++--.+.||+|+.
T Consensus       165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~l-------GAd~-~i~~~~~~~~~~~~~~~d~ii~  235 (339)
T COG1064         165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKL-------GADH-VINSSDSDALEAVKEIADAIID  235 (339)
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHh-------CCcE-EEEcCCchhhHHhHhhCcEEEE
Confidence            467889988887 3466677776333 8999999999999998763       2222 2222 33333322334999987


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       236 tv  237 (339)
T COG1064         236 TV  237 (339)
T ss_pred             CC
Confidence            64

>PLN02668 indole-3-acetate carboxyl methyltransferase

Probab=88.80  E-value=0.5  Score=41.53  Aligned_cols=78  Identities=14%  Similarity=-0.058  Sum_probs=40.3

Q ss_pred             CCeEEEEcCCCcHHHHHHh--------hc-------CCCcEEEEEeCCHHHHHH-HHHhhh---h-------hccCCCce
Q 030823           92 FPTALCLGGSLEAVRRLLR--------GR-------GGIEKLIMMDTSYDMLKL-CKDAQQ---D-------AHNDNIET  145 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~--------~~-------~~~~~v~gvD~S~~mL~~-a~~~~~---~-------~~~~~~~~  145 (171)
                      ...|+|+|||+|.++..+.        ++       .+.-+|+.-|+-..--+. .+....   .       ....+.+.
T Consensus        64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~  143 (386)
T PLN02668         64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS  143 (386)
T ss_pred             ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence            4589999999997664431        11       123477777874321111 110000   0       00011122


Q ss_pred             eEEEc---cCCCCCCCCCccceEEEec
Q 030823          146 CFVVG---DEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       146 ~~~~~---D~e~LPf~~~sfDlV~s~~  169 (171)
                      .|+.+   ....=-||++|.++++|+.
T Consensus       144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~  170 (386)
T PLN02668        144 YFAAGVPGSFYRRLFPARSIDVFHSAF  170 (386)
T ss_pred             eEEEecCccccccccCCCceEEEEeec
Confidence            34443   3333358999999999864

>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]

Probab=88.65  E-value=3.4  Score=35.31  Aligned_cols=74  Identities=14%  Similarity=0.025  Sum_probs=52.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfD  163 (171)
                      .+....+|.--|.|-.++.+.+..+ .++++++|-.+..++.|++...   .-+..+.++.+....+.     ...+.+|
T Consensus        22 ~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~---~~~~r~~~v~~~F~~l~~~l~~~~i~~vD   98 (314)
T COG0275          22 KPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLK---EFDGRVTLVHGNFANLAEALKELGIGKVD   98 (314)
T ss_pred             CCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhh---ccCCcEEEEeCcHHHHHHHHHhcCCCcee
Confidence            4558899999999999999987654 5689999999999999988542   12335666666444332     2234566


Q ss_pred             eEE
Q 030823          164 RFF  166 (171)
Q Consensus       164 lV~  166 (171)
                      -|+
T Consensus        99 GiL  101 (314)
T COG0275          99 GIL  101 (314)
T ss_pred             EEE
Confidence            554

>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]

Probab=88.56  E-value=1.5  Score=39.09  Aligned_cols=76  Identities=13%  Similarity=0.033  Sum_probs=53.4

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC---CCCCccc
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP---LKERYAC  163 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP---f~~~sfD  163 (171)
                      .++..+|||+++.+|.=+-+++. ....+.|++.|.+++-+....+..   +.-++ ++..+..|...+|   |+. +||
T Consensus       239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~---~rlGv~ntiv~n~D~~ef~~~~~~~-~fD  314 (460)
T KOG1122|consen  239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANL---HRLGVTNTIVSNYDGREFPEKEFPG-SFD  314 (460)
T ss_pred             CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHH---HHhCCCceEEEccCcccccccccCc-ccc
Confidence            46789999999999965555543 124579999999999888876543   23444 3444557777666   555 999


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      -|..-
T Consensus       315 RVLLD  319 (460)
T KOG1122|consen  315 RVLLD  319 (460)
T ss_pred             eeeec
Confidence            99753

>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised

Probab=88.22  E-value=2.4  Score=34.75  Aligned_cols=73  Identities=19%  Similarity=0.221  Sum_probs=42.3

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCC------ceeEEEccCC-CCCCCCCccce
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNI------ETCFVVGDEE-FLPLKERYACR  164 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~-~~~~~------~~~~~~~D~e-~LPf~~~sfDl  164 (171)
                      ++|||.=+|-|.=+..++..+  .+|++++-|+-+-...++-.... .....      .++.+.+|.. .|+.++++||+
T Consensus        77 ~~VLDaTaGLG~Da~vlA~~G--~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DV  154 (234)
T PF04445_consen   77 PSVLDATAGLGRDAFVLASLG--CKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDV  154 (234)
T ss_dssp             --EEETT-TTSHHHHHHHHHT----EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SE
T ss_pred             CEEEECCCcchHHHHHHHccC--CeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCE
Confidence            589999999998888887643  68999999986655543221110 12222      4667788864 46777899999


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus       155 VY~  157 (234)
T PF04445_consen  155 VYF  157 (234)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            974

; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.

>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D

Probab=87.98  E-value=0.13  Score=35.90  Aligned_cols=68  Identities=22%  Similarity=0.126  Sum_probs=20.6

Q ss_pred             EEEcCCCcHHHHHHhhcCC-C--cEEEEEeCCHH---HHHHHHHhhhhhccCCCceeEEEccCCC-CC-CCCCccceEEE
Q 030823           96 LCLGGSLEAVRRLLRGRGG-I--EKLIMMDTSYD---MLKLCKDAQQDAHNDNIETCFVVGDEEF-LP-LKERYACRFFV  167 (171)
Q Consensus        96 LDlGcGtG~l~~~L~~~~~-~--~~v~gvD~S~~---mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LP-f~~~sfDlV~s  167 (171)
                      ||+|+..|..+..+.+..+ .  .+++++|..+.   .-+..++.     .....+.++.++... ++ ++++++|+|+.
T Consensus         1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~-----~~~~~~~~~~g~s~~~l~~~~~~~~dli~i   75 (106)
T PF13578_consen    1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKA-----GLSDRVEFIQGDSPDFLPSLPDGPIDLIFI   75 (106)
T ss_dssp             --------------------------EEEESS------------G-----GG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred             CccccccccccccccccccccccCCEEEEECCCcccccchhhhhc-----CCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence            6899999988877765321 1  37999999985   22222221     112247778887642 22 33689999886


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      -
T Consensus        76 D   76 (106)
T PF13578_consen   76 D   76 (106)
T ss_dssp             E
T ss_pred             C
Confidence            4

>PRK13699 putative methylase; Provisional

Probab=87.21  E-value=3.2  Score=33.58  Aligned_cols=45  Identities=4%  Similarity=-0.172  Sum_probs=37.7

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.|||-=||+|..+..-.+.  ..+.+|+|++++..+.+.++.
T Consensus       161 s~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~r~  205 (227)
T PRK13699        161 THPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQRL  205 (227)
T ss_pred             CCCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHHHH
Confidence            357789999999999998877763  368999999999999987654

>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []

Probab=87.08  E-value=1.3  Score=36.80  Aligned_cols=64  Identities=13%  Similarity=0.060  Sum_probs=42.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-----CCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPL  157 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-----~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf  157 (171)
                      .+...++|+|||.|.++..+....     +...++.||-...-.......    ....  +.+..+..|++.+.+
T Consensus        17 ~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR~~~R~K~D~~~----~~~~~~~~~~R~riDI~dl~l   87 (259)
T PF05206_consen   17 NPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDRASNRHKADNKI----RKDESEPKFERLRIDIKDLDL   87 (259)
T ss_pred             CCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEecCcccccchhhh----hccCCCCceEEEEEEeeccch
Confidence            455689999999999999997644     345889999854333322211    1122  457778888887754

The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=85.51  E-value=1.9  Score=36.97  Aligned_cols=44  Identities=18%  Similarity=0.138  Sum_probs=36.0

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      .+..+||.+|||+ |..+..+++.....+++++|.++++++.+++
T Consensus       183 ~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~  227 (386)
T cd08283         183 KPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARS  227 (386)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            3457899999988 8888888775554579999999999999875

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=85.40  E-value=7.3  Score=32.16  Aligned_cols=73  Identities=18%  Similarity=0.092  Sum_probs=37.9

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCCC-CCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLPL-KERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LPf-~~~sfDlV~s~  168 (171)
                      ..+||.+|-+.- .+..++-.+..++|+.+|+.+.+++--++...   ..+.++..+..|.. .||- --+.||++++.
T Consensus        45 gk~il~lGDDDL-tSlA~al~~~~~~I~VvDiDeRll~fI~~~a~---~~gl~i~~~~~DlR~~LP~~~~~~fD~f~TD  119 (243)
T PF01861_consen   45 GKRILFLGDDDL-TSLALALTGLPKRITVVDIDERLLDFINRVAE---EEGLPIEAVHYDLRDPLPEELRGKFDVFFTD  119 (243)
T ss_dssp             T-EEEEES-TT--HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHH---HHT--EEEE---TTS---TTTSS-BSEEEE-
T ss_pred             CCEEEEEcCCcH-HHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHH---HcCCceEEEEecccccCCHHHhcCCCEEEeC
Confidence            578999985443 33334333456899999999999988765432   34556777778864 4442 14899999863

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]

Probab=84.80  E-value=2.3  Score=39.05  Aligned_cols=95  Identities=15%  Similarity=0.111  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHhccc-CCCeEEEEcCCCcHHHHHHhh----cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           71 DSFVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRG----RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~-~~~~vLDlGcGtG~l~~~L~~----~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      +..+++|...|.||..+... ....|+-+|.|.|-+.....+    ....-++++++-.|..+--.+....  ..-+-.+
T Consensus       346 ~~Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~--~~W~~~V  423 (649)
T KOG0822|consen  346 DQYQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNF--ECWDNRV  423 (649)
T ss_pred             HHHHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhch--hhhcCee
Confidence            34455666777777655422 245678999999987665532    2223488999998877665543211  0112357


Q ss_pred             eEEEccCCCCCCCCCccceEEE
Q 030823          146 CFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      +.+..|+..++-+.+..|+++|
T Consensus       424 tii~~DMR~w~ap~eq~DI~VS  445 (649)
T KOG0822|consen  424 TIISSDMRKWNAPREQADIIVS  445 (649)
T ss_pred             EEEeccccccCCchhhccchHH
Confidence            7888999999955599999886

>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B

Probab=84.58  E-value=2.8  Score=32.30  Aligned_cols=34  Identities=18%  Similarity=0.018  Sum_probs=23.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S  124 (171)
                      -..-|||+|=|.|..-.+|.+..+...|+.+|-.
T Consensus        28 ~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR~   61 (160)
T PF12692_consen   28 LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDRA   61 (160)
T ss_dssp             --S-EEEE--TTSHHHHHHHHH--SS-EEEEESS
T ss_pred             CCCceEEeccCCCccHHHHHHhCCCCeEEEEeee
Confidence            3477999999999999999998888999999963

>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function

Probab=83.22  E-value=2.9  Score=30.72  Aligned_cols=38  Identities=8%  Similarity=0.064  Sum_probs=23.7

Q ss_pred             EEcCCCc--HHHHHHh--hcCCCcEEEEEeCCHHHHHHHHHh
Q 030823           97 CLGGSLE--AVRRLLR--GRGGIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        97 DlGcGtG--~l~~~L~--~~~~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      |||++.|  .....+.  ..++..+|+++|+++.+.+..++.
T Consensus         1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~   42 (167)
T PF05050_consen    1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN   42 (167)
T ss_dssp             EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred             CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence            8999999  5554442  334668999999999998877654

; PDB: 2PY6_A.

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=82.24  E-value=5.8  Score=32.86  Aligned_cols=39  Identities=18%  Similarity=0.085  Sum_probs=28.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHH
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKL  130 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~  130 (171)
                      .+.+||++|+|+|..+...+-. ...+|+..|+..-+..-
T Consensus        86 ~~~~vlELGsGtglvG~~aa~~-~~~~v~ltD~~~~~~~L  124 (248)
T KOG2793|consen   86 KYINVLELGSGTGLVGILAALL-LGAEVVLTDLPKVVENL  124 (248)
T ss_pred             cceeEEEecCCccHHHHHHHHH-hcceeccCCchhhHHHH
Confidence            3567999999999777666542 34689999987654443

>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2

Probab=82.20  E-value=2.6  Score=34.60  Aligned_cols=64  Identities=14%  Similarity=0.040  Sum_probs=46.8

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC---CCCCccceEEEe
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKERYACRFFVL  168 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP---f~~~sfDlV~s~  168 (171)
                      +++|+=||-|.+...|...+ ...++++|+++...+.-+..     .+    ....+|...+.   ++. .+|+++..
T Consensus         2 ~~~dlFsG~Gg~~~g~~~ag-~~~~~a~e~~~~a~~~y~~N-----~~----~~~~~Di~~~~~~~l~~-~~D~l~gg   68 (335)
T PF00145_consen    2 KVIDLFSGIGGFSLGLEQAG-FEVVWAVEIDPDACETYKAN-----FP----EVICGDITEIDPSDLPK-DVDLLIGG   68 (335)
T ss_dssp             EEEEET-TTTHHHHHHHHTT-EEEEEEEESSHHHHHHHHHH-----HT----EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred             cEEEEccCccHHHHHHHhcC-cEEEEEeecCHHHHHhhhhc-----cc----ccccccccccccccccc-cceEEEec
Confidence            68999999999999998754 67899999999987776542     12    45678877774   544 58988754

1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....

>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]

Probab=81.87  E-value=14  Score=30.43  Aligned_cols=74  Identities=14%  Similarity=0.135  Sum_probs=50.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-CCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-LKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-f~~~sfDlV~s  167 (171)
                      .+..+||.+|-|-|...-.+.+..+. +=+.++..++.+++-++-.-   ...-++..+.+--| .+| +++++||-|+-
T Consensus       100 tkggrvLnVGFGMgIidT~iQe~~p~-~H~IiE~hp~V~krmr~~gw---~ek~nViil~g~WeDvl~~L~d~~FDGI~y  175 (271)
T KOG1709|consen  100 TKGGRVLNVGFGMGIIDTFIQEAPPD-EHWIIEAHPDVLKRMRDWGW---REKENVIILEGRWEDVLNTLPDKHFDGIYY  175 (271)
T ss_pred             hCCceEEEeccchHHHHHHHhhcCCc-ceEEEecCHHHHHHHHhccc---ccccceEEEecchHhhhccccccCcceeEe
Confidence            46789999999999999888876554 44568999999998865110   00113444455433 333 77899998864

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=81.68  E-value=4.1  Score=34.88  Aligned_cols=41  Identities=24%  Similarity=0.283  Sum_probs=35.1

Q ss_pred             CeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           93 PTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        93 ~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      .+|+-+|||+ |.++..+++.....+|+.+|.+++-++.|++
T Consensus       170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~  211 (350)
T COG1063         170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE  211 (350)
T ss_pred             CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence            4899999997 6777777776677899999999999999976

>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]

Probab=81.01  E-value=4.3  Score=33.94  Aligned_cols=93  Identities=15%  Similarity=0.181  Sum_probs=59.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCH----HHHHHHHHhhhhhcc
Q 030823           67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSY----DMLKLCKDAQQDAHN  140 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~----~mL~~a~~~~~~~~~  140 (171)
                      |.--.+++..+|.-+.--+..+ ..+..+||-||+++|..-.+... .++.+-|++++.|+    ++++.|+        
T Consensus       131 yRVWnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAk--------  202 (317)
T KOG1596|consen  131 YRVWNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAK--------  202 (317)
T ss_pred             EEEeChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhh--------
Confidence            4445667777777666555544 45778999999999977766654 34678999999986    4555554        


Q ss_pred             CCCceeEEEccCCCCC---CCCCccceEEE
Q 030823          141 DNIETCFVVGDEEFLP---LKERYACRFFV  167 (171)
Q Consensus       141 ~~~~~~~~~~D~e~LP---f~~~sfDlV~s  167 (171)
                      +..++..++-|+...-   ..-.-+|+|++
T Consensus       203 kRtNiiPIiEDArhP~KYRmlVgmVDvIFa  232 (317)
T KOG1596|consen  203 KRTNIIPIIEDARHPAKYRMLVGMVDVIFA  232 (317)
T ss_pred             ccCCceeeeccCCCchheeeeeeeEEEEec
Confidence            3345555665554221   11235666654

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=80.14  E-value=4  Score=35.27  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=35.9

Q ss_pred             CCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           91 TFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        91 ~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ...+||-+|+|+ |.++...++.....+|+.+|++++-|+.|++
T Consensus       169 ~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~  212 (354)
T KOG0024|consen  169 KGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK  212 (354)
T ss_pred             cCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence            458999999997 5556666676677899999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	99.6
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	99.54
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	99.51
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	99.49
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	99.48
3ege_A	261	Putative methyltransferase from antibiotic biosyn	99.47
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	99.47
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	99.47
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	99.47
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	99.46
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	99.46
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	99.45
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	99.45
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	99.43
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	99.43
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	99.43
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	99.43
3f4k_A	257	Putative methyltransferase; structural genomics, P	99.43
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	99.42
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	99.42
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	99.41
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	99.41
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	99.41
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	99.41
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	99.41
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	99.41
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	99.41
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	99.4
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	99.4
2p7i_A	250	Hypothetical protein; putative methyltransferase,	99.39
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	99.39
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	99.39
1xxl_A	239	YCGJ protein; structural genomics, protein structu	99.39
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	99.38
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	99.38
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	99.38
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	99.38
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	99.38
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	99.37
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	99.37
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	99.37
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	99.36
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	99.36
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	99.36
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	99.36
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	99.36
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	99.35
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	99.35
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	99.35
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	99.34
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	99.34
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	99.34
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	99.33
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	99.33
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	99.32
3lcc_A	235	Putative methyl chloride transferase; halide methy	99.32
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	99.31
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	99.31
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	99.31
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	99.31
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	99.31
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	99.31
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	99.3
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	99.3
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	99.3
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	99.3
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	99.3
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	99.3
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	99.29
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	99.29
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	99.29
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	99.29
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	99.29
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	99.28
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	99.28
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	99.28
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	99.28
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	99.28
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	99.28
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	99.27
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	99.27
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	99.27
3ocj_A	305	Putative exported protein; structural genomics, PS	99.27
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	99.27
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	99.26
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	99.26
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	99.26
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	99.26
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	99.26
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	99.25
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	99.25
2h00_A	254	Methyltransferase 10 domain containing protein; st	99.25
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	99.25
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	99.25
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	99.24
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	99.24
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	99.24
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	99.23
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	99.23
2esr_A	177	Methyltransferase; structural genomics, hypothetic	99.23
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	99.23
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	99.23
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	99.23
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	99.23
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	99.23
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	99.23
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	99.23
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	99.23
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	99.22
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	99.22
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	99.21
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	99.21
2b3t_A	276	Protein methyltransferase HEMK; translation termin	99.21
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	99.21
3i9f_A	170	Putative type 11 methyltransferase; structural gen	99.21
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	99.2
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	99.2
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	99.19
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	99.19
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	99.19
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	99.19
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	99.19
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	99.18
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	99.18
3cc8_A	230	Putative methyltransferase; structural genomics, j	99.18
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	99.18
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	99.18
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	99.17
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	99.17
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	99.17
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.17
3lpm_A	259	Putative methyltransferase; structural genomics, p	99.16
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	99.16
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	99.15
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	99.15
2frn_A	278	Hypothetical protein PH0793; structural genomics,	99.15
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	99.15
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	99.15
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	99.15
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	99.14
1ws6_A	171	Methyltransferase; structural genomics, riken stru	99.14
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	99.13
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	99.13
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	99.13
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	99.12
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	99.12
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	99.12
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	99.12
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	99.12
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	99.11
3lec_A	230	NADB-rossmann superfamily protein; PSI, MCSG, stru	99.11
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	99.11
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	99.11
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	99.1
3gnl_A	244	Uncharacterized protein, DUF633, LMOF2365_1472; st	99.1
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	99.1
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	99.1
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	99.1
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	99.09
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	99.09
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	99.09
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	99.09
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	99.08
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	99.08
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	99.07
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	99.07
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	99.07
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	99.07
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	99.05
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	99.05
2b25_A	336	Hypothetical protein; structural genomics, methyl	99.05
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	99.05
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	99.05
3kr9_A	225	SAM-dependent methyltransferase; class I rossmann-	99.04
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	99.04
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	99.04
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	99.03
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	99.03
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	99.03
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	99.03
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	99.02
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	99.02
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	99.02
2o07_A	304	Spermidine synthase; structural genomics, structur	99.02
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	99.01
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	99.01
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	99.0
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	99.0
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	99.0
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	99.0
2pt6_A	321	Spermidine synthase; transferase, structural genom	98.99
2qm3_A	373	Predicted methyltransferase; putative methyltransf	98.98
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	98.98
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	98.98
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	98.98
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	98.97
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	98.97
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	98.97
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	98.96
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	98.96
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	98.96
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	98.95
1af7_A	274	Chemotaxis receptor methyltransferase CHER; chemot	98.95
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	98.94
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	98.94
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	98.93
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	98.93
1qyr_A	252	KSGA, high level kasugamycin resistance protein, S	98.92
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	98.91
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	98.91
2i7c_A	283	Spermidine synthase; transferase, structural genom	98.91
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	98.91
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	98.9
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	98.9
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	98.89
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	98.88
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	98.88
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	98.88
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	98.88
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	98.87
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	98.87
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	98.87
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	98.86
3sso_A	419	Methyltransferase; macrolide, natural product, ros	98.86
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	98.85
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	98.83
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	98.83
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	98.82
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	98.82
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.81
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	98.81
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	98.8
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	98.8
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	98.8
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	98.79
3k0b_A	393	Predicted N6-adenine-specific DNA methylase; methy	98.79
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	98.79
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	98.77
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	98.77
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	98.76
3giw_A	277	Protein of unknown function DUF574; rossmann-fold	98.74
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	98.74
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	98.74
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	98.73
3ldg_A	384	Putative uncharacterized protein SMU.472; YPSC, me	98.72
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	98.72
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	98.71
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	98.71
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	98.71
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	98.7
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	98.69
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	98.69
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	98.69
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	98.68
3ll7_A	410	Putative methyltransferase; methytransferase, stru	98.67
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	98.65
3k6r_A	278	Putative transferase PH0793; structural genomics,	98.64
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.62
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	98.62
2b9e_A	309	NOL1/NOP2/SUN domain family, member 5 isoform 2; m	98.61
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	98.6
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	98.57
2okc_A	445	Type I restriction enzyme stysji M protein; NP_813	98.46
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	98.45
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	98.41
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	98.39
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	98.33
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	98.26
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	98.23
4auk_A	375	Ribosomal RNA large subunit methyltransferase M; Y	98.19
2xyq_A	290	Putative 2'-O-methyl transferase; transferase-vira	98.17
3evf_A	277	RNA-directed RNA polymerase NS5; NS5 methyltransfe	98.14
3lkd_A	542	Type I restriction-modification system methyltrans	98.1
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	98.06
3gcz_A	282	Polyprotein; flavivirus, RNA capping, methyltransf	98.02
1wg8_A	285	Predicted S-adenosylmethionine-dependent methyltra	98.01
2ar0_A	541	M.ecoki, type I restriction enzyme ecoki M protein	97.98
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	97.96
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	97.93
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	97.92
3o4f_A	294	Spermidine synthase; aminopropyltransferase, polya	97.87
3khk_A	544	Type I restriction-modification system methylation	97.81
2zig_A	297	TTHA0409, putative modification methylase; methylt	97.79
3s1s_A	878	Restriction endonuclease bpusi; PD--(D/E)XK cataly	97.77
2efj_A	384	3,7-dimethylxanthine methyltransferase; SAM-depend	97.77
3eld_A	300	Methyltransferase; flavivirus, RNA capping, guanyl	97.68
1m6e_X	359	S-adenosyl-L-methionnine:salicylic acid carboxyl m	97.56
3cvo_A	202	Methyltransferase-like protein of unknown functio;	97.5
1i4w_A	353	Mitochondrial replication protein MTF1; mitochondr	97.42
3b5i_A	374	S-adenosyl-L-methionine:salicylic acid carboxyl me	97.39
3p8z_A	267	Mtase, non-structural protein 5; methyltransferase	97.38
3lkz_A	321	Non-structural protein 5; flavivirus, methyltransf	97.31
4fzv_A	359	Putative methyltransferase NSUN4; mterf fold, meth	97.14
3tka_A	347	Ribosomal RNA small subunit methyltransferase H; H	97.1
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	96.98
2px2_A	269	Genome polyprotein [contains: capsid protein C (co	96.92
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	96.65
3ufb_A	530	Type I restriction-modification system methyltran	96.4
2wk1_A	282	NOVP; transferase, O-methyltransferase, novobiocin	96.13
1g55_A	343	DNA cytosine methyltransferase DNMT2; human DNA me	95.15
3g7u_A	376	Cytosine-specific methyltransferase; DNA-binding,	95.01
3c6k_A	381	Spermine synthase; spermidine aminopropyltransfera	94.4
3r24_A	344	NSP16, 2'-O-methyl transferase; methyltransferase,	94.03
2py6_A	409	Methyltransferase FKBM; YP_546752.1, structural ge	93.98
1zkd_A	387	DUF185; NESG, RPR58, structural genomics, PSI, pro	93.81
2c7p_A	327	Modification methylase HHAI; DNA methyltransferase	92.77
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	92.23
3qv2_A	327	5-cytosine DNA methyltransferase; DNMT2, ehmeth; H	91.64
4h0n_A	333	DNMT2; SAH binding, transferase; HET: SAH; 2.71A {	90.38
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	88.9
3iht_A	174	S-adenosyl-L-methionine methyl transferase; YP_165	88.41
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	86.51
2qrv_A	295	DNA (cytosine-5)-methyltransferase 3A; DNA methylt	86.48
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	86.36
4f3n_A	432	Uncharacterized ACR, COG1565 superfamily; structur	85.5
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	84.18
3ius_A	286	Uncharacterized conserved protein; APC63810, silic	84.06
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	83.89
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	83.15
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	82.88
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	82.88
3ubt_Y	331	Modification methylase HAEIII; protein-DNA complex	82.77
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.45
1rjd_A	334	PPM1P, carboxy methyl transferase for protein phos	80.81
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	80.24

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=99.60  E-value=3e-15  Score=121.87  Aligned_cols=71  Identities=13%  Similarity=-0.037  Sum_probs=61.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .....+|||||||||.++..|.+.+  .+|+|+|+|++|++.|++        ..++.++++|++.+|+++++||+|+++
T Consensus        37 ~~~~~~vLDvGcGtG~~~~~l~~~~--~~v~gvD~s~~ml~~a~~--------~~~v~~~~~~~e~~~~~~~sfD~v~~~  106 (257)
T 4hg2_A           37 APARGDALDCGCGSGQASLGLAEFF--ERVHAVDPGEAQIRQALR--------HPRVTYAVAPAEDTGLPPASVDVAIAA  106 (257)
T ss_dssp             SSCSSEEEEESCTTTTTHHHHHTTC--SEEEEEESCHHHHHTCCC--------CTTEEEEECCTTCCCCCSSCEEEEEEC
T ss_pred             cCCCCCEEEEcCCCCHHHHHHHHhC--CEEEEEeCcHHhhhhhhh--------cCCceeehhhhhhhcccCCcccEEEEe
Confidence            3455789999999999999999854  799999999999988742        346889999999999999999999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       107 ~  107 (257)
T 4hg2_A          107 Q  107 (257)
T ss_dssp             S
T ss_pred             e
Confidence            4

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=99.54  E-value=7.8e-14  Score=113.52  Aligned_cols=79  Identities=19%  Similarity=0.143  Sum_probs=63.3

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .++..+|||||||||.++..|++..  +..+|+|+|+|++||+.|+++... .....++.++++|.+.+|++  .||+|+
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~-~~~~~~v~~~~~D~~~~~~~--~~d~v~  144 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDA-YKAPTPVDVIEGDIRDIAIE--NASMVV  144 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHT-SCCSSCEEEEESCTTTCCCC--SEEEEE
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHh-hccCceEEEeeccccccccc--ccccce
Confidence            4577899999999999999998753  345999999999999999876431 11223688999999999984  599999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++.+
T Consensus       145 ~~~~  148 (261)
T 4gek_A          145 LNFT  148 (261)
T ss_dssp             EESC
T ss_pred             eeee
Confidence            8753

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=99.51  E-value=2.1e-13  Score=106.99  Aligned_cols=114  Identities=15%  Similarity=0.122  Sum_probs=83.4

Q ss_pred             CccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH
Q 030823           46 SRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY  125 (171)
Q Consensus        46 ~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~  125 (171)
                      .+...||+....++...... ...++.+.    ..+.+.+.. ..+..+|||+|||+|.++..+.+..+..+|+++|+|+
T Consensus         5 ~~~~~f~~~a~~y~~~~~~~-~~~~~~~~----~~~~~~~~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~   78 (234)
T 3dtn_A            5 EIKRKFDAVSGKYDEQRRKF-IPCFDDFY----GVSVSIASV-DTENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSE   78 (234)
T ss_dssp             SSCCCCCHHHHHHHHHHHHH-CTTHHHHH----HHHHHTCCC-SCSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCH
T ss_pred             HHHHHHHHHHHHHHHhHHHh-CcCHHHHH----HHHHHHhhc-CCCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCH
Confidence            46778999887776543322 22222222    333333322 3456899999999999999999876678999999999


Q ss_pred             HHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823          126 DMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       126 ~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +|++.+++...    ...++.++++|.+.+|++ ++||+|+++.+
T Consensus        79 ~~~~~a~~~~~----~~~~~~~~~~d~~~~~~~-~~fD~v~~~~~  118 (234)
T 3dtn_A           79 KMLEIAKNRFR----GNLKVKYIEADYSKYDFE-EKYDMVVSALS  118 (234)
T ss_dssp             HHHHHHHHHTC----SCTTEEEEESCTTTCCCC-SCEEEEEEESC
T ss_pred             HHHHHHHHhhc----cCCCEEEEeCchhccCCC-CCceEEEEeCc
Confidence            99999987542    122788999999999987 99999999753

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=99.49  E-value=3e-13  Score=108.01  Aligned_cols=75  Identities=17%  Similarity=0.184  Sum_probs=63.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++.+|||||||+|.++..|.+.+  .+|+++|+|++|++.+++...   ..+ .++.++++|.+.+|+++++||+|+++
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~---~~~~~~v~~~~~d~~~l~~~~~~fD~V~~~  110 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIE---GNGHQQVEYVQGDAEQMPFTDERFHIVTCR  110 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEECCC-CCCSCTTCEEEEEEE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHH---hcCCCceEEEEecHHhCCCCCCCEEEEEEh
Confidence            467899999999999999998854  599999999999999987542   123 25889999999999999999999998


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       111 ~  111 (260)
T 1vl5_A          111 I  111 (260)
T ss_dssp             S
T ss_pred             h
Confidence            5

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=99.48  E-value=1.7e-13  Score=108.80  Aligned_cols=111  Identities=19%  Similarity=0.172  Sum_probs=77.8

Q ss_pred             ccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHH
Q 030823           49 SIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDML  128 (171)
Q Consensus        49 ~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL  128 (171)
                      ..||+.+..+.+.+     .....+.+.+.+.+.+. .....+..+|||+|||+|.++..+.+.  ..+|+|+|+|++|+
T Consensus         3 ~~~~~~a~~y~~~~-----~~~~~~~~~~~~~l~~~-~~~~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~   74 (263)
T 2yqz_A            3 SALLRAAYAYDRLR-----AHPPEVAGQIATAMASA-VHPKGEEPVFLELGVGTGRIALPLIAR--GYRYIALDADAAML   74 (263)
T ss_dssp             HHHHHHHHHHHHHH-----CCCHHHHHHHHHHHHHH-CCCSSSCCEEEEETCTTSTTHHHHHTT--TCEEEEEESCHHHH
T ss_pred             CchHHHHHHHhhhc-----ccChHHHHHHHHHHHHh-hcCCCCCCEEEEeCCcCCHHHHHHHHC--CCEEEEEECCHHHH
Confidence            45676666565432     12223333333333221 112245689999999999999999875  47999999999999


Q ss_pred             HHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823          129 KLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       129 ~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +.+++...   ....++.++++|.+.+|+++++||+|+++.+
T Consensus        75 ~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  113 (263)
T 2yqz_A           75 EVFRQKIA---GVDRKVQVVQADARAIPLPDESVHGVIVVHL  113 (263)
T ss_dssp             HHHHHHTT---TSCTTEEEEESCTTSCCSCTTCEEEEEEESC
T ss_pred             HHHHHHhh---ccCCceEEEEcccccCCCCCCCeeEEEECCc
Confidence            99987531   1234688999999999999999999999753

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=99.47  E-value=1.4e-13  Score=110.60  Aligned_cols=83  Identities=11%  Similarity=0.049  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL  155 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L  155 (171)
                      .+.+.+.+.+.  ..+..+|||||||+|.++..+.+  +..+|+|+|+|+.|++.+++        ..++.++++|.+.+
T Consensus        21 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~--------~~~~~~~~~d~~~~   88 (261)
T 3ege_A           21 RIVNAIINLLN--LPKGSVIADIGAGTGGYSVALAN--QGLFVYAVEPSIVMRQQAVV--------HPQVEWFTGYAENL   88 (261)
T ss_dssp             HHHHHHHHHHC--CCTTCEEEEETCTTSHHHHHHHT--TTCEEEEECSCHHHHHSSCC--------CTTEEEECCCTTSC
T ss_pred             HHHHHHHHHhC--CCCCCEEEEEcCcccHHHHHHHh--CCCEEEEEeCCHHHHHHHHh--------ccCCEEEECchhhC
Confidence            44555555443  24568999999999999999987  45799999999999998753        22788999999999


Q ss_pred             CCCCCccceEEEecc
Q 030823          156 PLKERYACRFFVLAL  170 (171)
Q Consensus       156 Pf~~~sfDlV~s~~~  170 (171)
                      |+++++||+|+++.+
T Consensus        89 ~~~~~~fD~v~~~~~  103 (261)
T 3ege_A           89 ALPDKSVDGVISILA  103 (261)
T ss_dssp             CSCTTCBSEEEEESC
T ss_pred             CCCCCCEeEEEEcch
Confidence            999999999999763

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=99.47  E-value=1.3e-13  Score=107.37  Aligned_cols=77  Identities=13%  Similarity=0.022  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc----------cCCCceeEEEccCCCCCCCC-
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH----------NDNIETCFVVGDEEFLPLKE-  159 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~----------~~~~~~~~~~~D~e~LPf~~-  159 (171)
                      +..+|||+|||+|..+..|++.+  .+|+|+|+|++|++.|+++.....          ....++.++++|...+|+++ 
T Consensus        22 ~~~~vLD~GCG~G~~~~~la~~g--~~V~gvD~S~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~l~~~~~   99 (203)
T 1pjz_A           22 PGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTARDI   99 (203)
T ss_dssp             TTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHHHH
T ss_pred             CCCEEEEeCCCCcHhHHHHHHCC--CeEEEEeCCHHHHHHHHHHccCCcccccccccccccCCccEEEECccccCCcccC
Confidence            56899999999999999998854  599999999999999987531000          01246889999999999876 


Q ss_pred             CccceEEEec
Q 030823          160 RYACRFFVLA  169 (171)
Q Consensus       160 ~sfDlV~s~~  169 (171)
                      ++||+|++..
T Consensus       100 ~~fD~v~~~~  109 (203)
T 1pjz_A          100 GHCAAFYDRA  109 (203)
T ss_dssp             HSEEEEEEES
T ss_pred             CCEEEEEECc
Confidence            8999999864

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=99.47  E-value=5.1e-13  Score=103.99  Aligned_cols=96  Identities=14%  Similarity=0.078  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccC---CCceeEEE
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND---NIETCFVV  149 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~---~~~~~~~~  149 (171)
                      +.....+.+.+.+..  .+..+|||||||+|.++..+.+.++..+|+|+|+|++|++.+++........   ..++.+++
T Consensus        13 ~~~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~   90 (219)
T 3jwg_A           13 LNQQRLGTVVAVLKS--VNAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKIDRLPEMQRKRISLFQ   90 (219)
T ss_dssp             HHHHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGGGSCHHHHTTEEEEE
T ss_pred             chHHHHHHHHHHHhh--cCCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhhccccccCcceEEEe
Confidence            334444444444432  3568999999999999999998766679999999999999998754210000   01578899


Q ss_pred             ccCCCCCCCCCccceEEEecc
Q 030823          150 GDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +|.+.+++++++||+|+++.+
T Consensus        91 ~d~~~~~~~~~~fD~V~~~~~  111 (219)
T 3jwg_A           91 SSLVYRDKRFSGYDAATVIEV  111 (219)
T ss_dssp             CCSSSCCGGGTTCSEEEEESC
T ss_pred             CcccccccccCCCCEEEEHHH
Confidence            999999998999999998754

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.47  E-value=1e-12  Score=102.19  Aligned_cols=88  Identities=20%  Similarity=0.237  Sum_probs=69.6

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf  157 (171)
                      .+.+.+.+.....+..+|||+|||+|.++..+.+.+  .+++++|+|++|++.+++...   ..+.++.++++|...+|+
T Consensus        25 ~~~~~~~l~~~~~~~~~vLDlG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~   99 (227)
T 1ve3_A           25 IETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDYG--FEVVGVDISEDMIRKAREYAK---SRESNVEFIVGDARKLSF   99 (227)
T ss_dssp             HHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---HTTCCCEEEECCTTSCCS
T ss_pred             HHHHHHHHHHhcCCCCeEEEEeccCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH---hcCCCceEEECchhcCCC
Confidence            344444444433457899999999999999998865  399999999999999987542   123567889999999999


Q ss_pred             CCCccceEEEecc
Q 030823          158 KERYACRFFVLAL  170 (171)
Q Consensus       158 ~~~sfDlV~s~~~  170 (171)
                      ++++||+|+++.+
T Consensus       100 ~~~~~D~v~~~~~  112 (227)
T 1ve3_A          100 EDKTFDYVIFIDS  112 (227)
T ss_dssp             CTTCEEEEEEESC
T ss_pred             CCCcEEEEEEcCc
Confidence            8999999999754

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=99.46  E-value=7.8e-13  Score=102.94  Aligned_cols=91  Identities=12%  Similarity=0.147  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC------ceeEE
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI------ETCFV  148 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~------~~~~~  148 (171)
                      ....+.+.+.+..  .+..+|||+|||+|.++..+.+.++..+|+|+|+|++|++.+++...   ..+.      ++.++
T Consensus        15 ~~~~~~l~~~l~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~~~v~~~   89 (217)
T 3jwh_A           15 QQRMNGVVAALKQ--SNARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLD---RLRLPRNQWERLQLI   89 (217)
T ss_dssp             HHHHHHHHHHHHH--TTCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHT---TCCCCHHHHTTEEEE
T ss_pred             HHHHHHHHHHHHh--cCCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHH---HhcCCcccCcceEEE
Confidence            3334444444432  35579999999999999999987666799999999999999987542   1221      58889


Q ss_pred             EccCCCCCCCCCccceEEEecc
Q 030823          149 VGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       149 ~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ++|.+.+++++++||+|+++.+
T Consensus        90 ~~d~~~~~~~~~~fD~v~~~~~  111 (217)
T 3jwh_A           90 QGALTYQDKRFHGYDAATVIEV  111 (217)
T ss_dssp             ECCTTSCCGGGCSCSEEEEESC
T ss_pred             eCCcccccccCCCcCEEeeHHH
Confidence            9999999988899999998764

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=99.46  E-value=1.8e-12  Score=99.73  Aligned_cols=98  Identities=21%  Similarity=0.203  Sum_probs=75.5

Q ss_pred             CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030823           68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF  147 (171)
Q Consensus        68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~  147 (171)
                      ..+.++...+++.+.+.+.   .+..+|||+|||+|.++..+.+. +..+|+++|+|++|++.+++.... .....++.+
T Consensus        23 ~~~~~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~-~~~~v~~~D~s~~~~~~a~~~~~~-~~~~~~~~~   97 (219)
T 3dlc_A           23 TLFAPIYPIIAENIINRFG---ITAGTCIDIGSGPGALSIALAKQ-SDFSIRALDFSKHMNEIALKNIAD-ANLNDRIQI   97 (219)
T ss_dssp             TTTTTHHHHHHHHHHHHHC---CCEEEEEEETCTTSHHHHHHHHH-SEEEEEEEESCHHHHHHHHHHHHH-TTCTTTEEE
T ss_pred             HhhccccHHHHHHHHHhcC---CCCCEEEEECCCCCHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHh-ccccCceEE
Confidence            3455566677777766553   22249999999999999999875 456999999999999999875421 011225889


Q ss_pred             EEccCCCCCCCCCccceEEEecc
Q 030823          148 VVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +++|.+.+|+++++||+|+++.+
T Consensus        98 ~~~d~~~~~~~~~~~D~v~~~~~  120 (219)
T 3dlc_A           98 VQGDVHNIPIEDNYADLIVSRGS  120 (219)
T ss_dssp             EECBTTBCSSCTTCEEEEEEESC
T ss_pred             EEcCHHHCCCCcccccEEEECch
Confidence            99999999999999999999753

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=99.45  E-value=5.8e-13  Score=106.52  Aligned_cols=109  Identities=10%  Similarity=0.000  Sum_probs=76.6

Q ss_pred             Ccccccc-HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823           46 SRVSIFD-RHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (171)
Q Consensus        46 ~~~~iFD-r~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S  124 (171)
                      .....|+ .....++.... .....+....+.+    .+.+.....+..+|||||||+|.++..|.+.+  .+|+|+|+|
T Consensus         9 ~~~~~y~~~~a~~yd~~~~-~~~~~~~~~~~~~----~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s   81 (263)
T 3pfg_A            9 GPQADYSGEIAELYDLVHQ-GKGKDYHREAADL----AALVRRHSPKAASLLDVACGTGMHLRHLADSF--GTVEGLELS   81 (263)
T ss_dssp             -CBCSCCHHHHHHHHHHHH-HTTCCHHHHHHHH----HHHHHHHCTTCCEEEEETCTTSHHHHHHTTTS--SEEEEEESC
T ss_pred             CcccccchhHHHHHHHHhh-cCCCCHHHHHHHH----HHHHHhhCCCCCcEEEeCCcCCHHHHHHHHcC--CeEEEEECC
Confidence            4566888 54544443211 1112233333333    33333333456899999999999999998854  689999999


Q ss_pred             HHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          125 YDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       125 ~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++|++.+++..     .  ++.++++|.+.+|+ +++||+|+++.
T Consensus        82 ~~~~~~a~~~~-----~--~~~~~~~d~~~~~~-~~~fD~v~~~~  118 (263)
T 3pfg_A           82 ADMLAIARRRN-----P--DAVLHHGDMRDFSL-GRRFSAVTCMF  118 (263)
T ss_dssp             HHHHHHHHHHC-----T--TSEEEECCTTTCCC-SCCEEEEEECT
T ss_pred             HHHHHHHHhhC-----C--CCEEEECChHHCCc-cCCcCEEEEcC
Confidence            99999998742     2  57889999999998 89999999874

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=99.45  E-value=1.6e-12  Score=104.30  Aligned_cols=94  Identities=15%  Similarity=0.106  Sum_probs=75.2

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      ..+.+..+.+.+.+.+...+   ..+..+|||+|||+|.++..+.+..+..+|+++|+|++|++.+++.       ..++
T Consensus        63 ~~~~~~~~~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~-------~~~~  132 (269)
T 1p91_A           63 DAGHYQPLRDAIVAQLRERL---DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKR-------YPQV  132 (269)
T ss_dssp             TTTTTHHHHHHHHHHHHHHS---CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHH-------CTTS
T ss_pred             hCCCcHHHHHHHHHHHHHhc---CCCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHh-------CCCc
Confidence            34567777777666654432   2456899999999999999998864457999999999999999763       2346


Q ss_pred             eEEEccCCCCCCCCCccceEEEec
Q 030823          146 CFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .++++|.+.+|+++++||+|+++.
T Consensus       133 ~~~~~d~~~~~~~~~~fD~v~~~~  156 (269)
T 1p91_A          133 TFCVASSHRLPFSDTSMDAIIRIY  156 (269)
T ss_dssp             EEEECCTTSCSBCTTCEEEEEEES
T ss_pred             EEEEcchhhCCCCCCceeEEEEeC
Confidence            789999999999999999999865

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=99.43  E-value=2e-13  Score=108.30  Aligned_cols=95  Identities=20%  Similarity=0.143  Sum_probs=74.1

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      .|..+...+...+..+++.+.  ..+..+|||+|||+|.++..+.+..+..+|+++|+|++|++.+++.       ..++
T Consensus        10 ~y~~~~~~~~~~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~-------~~~~   80 (259)
T 2p35_A           10 QYLKFEDERTRPARDLLAQVP--LERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR-------LPNT   80 (259)
T ss_dssp             GGBCCCCGGGHHHHHHHTTCC--CSCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH-------STTS
T ss_pred             HHHHHHHHHHHHHHHHHHhcC--CCCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh-------CCCc
Confidence            345554455556666655543  2456799999999999999998765567999999999999999863       2357


Q ss_pred             eEEEccCCCCCCCCCccceEEEecc
Q 030823          146 CFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      .++++|.+.+| ++++||+|+++.+
T Consensus        81 ~~~~~d~~~~~-~~~~fD~v~~~~~  104 (259)
T 2p35_A           81 NFGKADLATWK-PAQKADLLYANAV  104 (259)
T ss_dssp             EEEECCTTTCC-CSSCEEEEEEESC
T ss_pred             EEEECChhhcC-ccCCcCEEEEeCc
Confidence            78999999999 7899999999763

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=99.43  E-value=4.7e-13  Score=105.20  Aligned_cols=75  Identities=19%  Similarity=0.122  Sum_probs=64.5

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+..+|||||||+|.++..+.+.  ..+|+++|+|+.|++.+++..     ...++.++++|.+.+|+++++||+|+++
T Consensus        51 ~~~~~~vLDiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~~  123 (242)
T 3l8d_A           51 VKKEAEVLDVGCGDGYGTYKLSRT--GYKAVGVDISEVMIQKGKERG-----EGPDLSFIKGDLSSLPFENEQFEAIMAI  123 (242)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHTTT-----CBTTEEEEECBTTBCSSCTTCEEEEEEE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhc-----ccCCceEEEcchhcCCCCCCCccEEEEc
Confidence            346789999999999999999985  369999999999999998632     3346889999999999999999999997


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus       124 ~~  125 (242)
T 3l8d_A          124 NS  125 (242)
T ss_dssp             SC
T ss_pred             Ch
Confidence            64

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=99.43  E-value=9.6e-13  Score=105.60  Aligned_cols=92  Identities=11%  Similarity=0.123  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEcc
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGD  151 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D  151 (171)
                      .......+++.+.. ..+..+|||||||+|.++..+++. +..+|+|+|+|+.|++.+++...   ..++  ++.++++|
T Consensus        30 ~~~~~~~~l~~l~~-~~~~~~vLDiGcG~G~~~~~la~~-~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d  104 (267)
T 3kkz_A           30 SPEVTLKALSFIDN-LTEKSLIADIGCGTGGQTMVLAGH-VTGQVTGLDFLSGFIDIFNRNAR---QSGLQNRVTGIVGS  104 (267)
T ss_dssp             CHHHHHHHHTTCCC-CCTTCEEEEETCTTCHHHHHHHTT-CSSEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECC
T ss_pred             CHHHHHHHHHhccc-CCCCCEEEEeCCCCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHHHHH---HcCCCcCcEEEEcC
Confidence            33444444443331 245689999999999999999886 45699999999999999987542   2332  48899999


Q ss_pred             CCCCCCCCCccceEEEecc
Q 030823          152 EEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       152 ~e~LPf~~~sfDlV~s~~~  170 (171)
                      .+.+|+++++||+|+++.+
T Consensus       105 ~~~~~~~~~~fD~i~~~~~  123 (267)
T 3kkz_A          105 MDDLPFRNEELDLIWSEGA  123 (267)
T ss_dssp             TTSCCCCTTCEEEEEESSC
T ss_pred             hhhCCCCCCCEEEEEEcCC
Confidence            9999999999999998753

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=99.43  E-value=7.5e-13  Score=105.00  Aligned_cols=93  Identities=13%  Similarity=-0.015  Sum_probs=71.8

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCF  147 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~  147 (171)
                      ..+......+.+.+.+.  ..+..+|||||||+|.++..+++.. ..+|+|+|+|++|++.+++...   ..+.  ++.+
T Consensus        17 ~~~~~~~~~~~l~~~~~--~~~~~~VLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~v~~   90 (256)
T 1nkv_A           17 HNPFTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDH-GITGTGIDMSSLFTAQAKRRAE---ELGVSERVHF   90 (256)
T ss_dssp             SSSCCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHT-CCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEE
T ss_pred             cCCCCHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc-CCeEEEEeCCHHHHHHHHHHHH---hcCCCcceEE
Confidence            34444555566655543  2456899999999999999998754 3599999999999999987542   2332  5889


Q ss_pred             EEccCCCCCCCCCccceEEEec
Q 030823          148 VVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +++|.+.+|+ +++||+|++..
T Consensus        91 ~~~d~~~~~~-~~~fD~V~~~~  111 (256)
T 1nkv_A           91 IHNDAAGYVA-NEKCDVAACVG  111 (256)
T ss_dssp             EESCCTTCCC-SSCEEEEEEES
T ss_pred             EECChHhCCc-CCCCCEEEECC
Confidence            9999999998 89999999864

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=99.43  E-value=7.6e-13  Score=105.05  Aligned_cols=91  Identities=9%  Similarity=0.076  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE  152 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~  152 (171)
                      ......+.+.+..+ .+..+|||+|||+|.++..+++.++ .+|+|+|+|+.|++.+++...   ..+.  ++.++++|.
T Consensus        31 ~~~~~~~l~~l~~~-~~~~~vLDiG~G~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~~~d~  105 (257)
T 3f4k_A           31 PEATRKAVSFINEL-TDDAKIADIGCGTGGQTLFLADYVK-GQITGIDLFPDFIEIFNENAV---KANCADRVKGITGSM  105 (257)
T ss_dssp             HHHHHHHHTTSCCC-CTTCEEEEETCTTSHHHHHHHHHCC-SEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECCT
T ss_pred             HHHHHHHHHHHhcC-CCCCeEEEeCCCCCHHHHHHHHhCC-CeEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECCh
Confidence            34444444444322 3457999999999999999988654 499999999999999987542   2333  388999999


Q ss_pred             CCCCCCCCccceEEEecc
Q 030823          153 EFLPLKERYACRFFVLAL  170 (171)
Q Consensus       153 e~LPf~~~sfDlV~s~~~  170 (171)
                      +.+|+++++||+|+++.+
T Consensus       106 ~~~~~~~~~fD~v~~~~~  123 (257)
T 3f4k_A          106 DNLPFQNEELDLIWSEGA  123 (257)
T ss_dssp             TSCSSCTTCEEEEEEESC
T ss_pred             hhCCCCCCCEEEEEecCh
Confidence            999999999999998753

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=99.42  E-value=1.6e-12  Score=100.81  Aligned_cols=74  Identities=11%  Similarity=0.060  Sum_probs=62.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..|.+.+  .+|+|+|+|++|++.+++...    ...++.++++|.+.++ ++++||+|+++.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~~d~~~~~-~~~~fD~v~~~~  122 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHC--KRLTVIDVMPRAIGRACQRTK----RWSHISWAATDILQFS-TAELFDLIVVAE  122 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGE--EEEEEEESCHHHHHHHHHHTT----TCSSEEEEECCTTTCC-CSCCEEEEEEES
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHhcc----cCCCeEEEEcchhhCC-CCCCccEEEEcc
Confidence            345789999999999999998854  699999999999999987542    2236889999999999 689999999975


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       123 ~  123 (216)
T 3ofk_A          123 V  123 (216)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=99.42  E-value=1.4e-12  Score=103.54  Aligned_cols=94  Identities=12%  Similarity=0.046  Sum_probs=72.7

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV  149 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~  149 (171)
                      ......+..+.+++.+.  ..+..+|||+|||+|.++..+++.. ..+|+|+|+|++|++.+++...    ...++.+++
T Consensus        36 ~~~~~~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~  108 (266)
T 3ujc_A           36 ISSGGLEATKKILSDIE--LNENSKVLDIGSGLGGGCMYINEKY-GAHTHGIDICSNIVNMANERVS----GNNKIIFEA  108 (266)
T ss_dssp             CSTTHHHHHHHHTTTCC--CCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHTCC----SCTTEEEEE
T ss_pred             cccchHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHhh----cCCCeEEEE
Confidence            34444445555554442  2456799999999999999998753 4699999999999999987531    115688999


Q ss_pred             ccCCCCCCCCCccceEEEecc
Q 030823          150 GDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +|.+.+|+++++||+|+++.+
T Consensus       109 ~d~~~~~~~~~~fD~v~~~~~  129 (266)
T 3ujc_A          109 NDILTKEFPENNFDLIYSRDA  129 (266)
T ss_dssp             CCTTTCCCCTTCEEEEEEESC
T ss_pred             CccccCCCCCCcEEEEeHHHH
Confidence            999999999999999999753

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.41  E-value=4.1e-13  Score=106.21  Aligned_cols=74  Identities=9%  Similarity=0.026  Sum_probs=62.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--CCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L--Pf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..|.+.+ ..+|+++|+|++|++.|++...   ..+.++.++++|.+.+  |+++++||+|++
T Consensus        59 ~~~~~vLDiGcGtG~~~~~l~~~~-~~~v~gvD~s~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~fD~V~~  134 (236)
T 1zx0_A           59 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAP---RQTHKVIPLKGLWEDVAPTLPDGHFDGILY  134 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGG---GCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHhcC-CCeEEEEcCCHHHHHHHHHHHH---hcCCCeEEEecCHHHhhcccCCCceEEEEE
Confidence            456799999999999999997643 3599999999999999987542   2345788899999988  999999999998

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=99.41  E-value=1.5e-12  Score=106.37  Aligned_cols=81  Identities=10%  Similarity=0.042  Sum_probs=66.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCC------Ccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE------RYA  162 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~------~sf  162 (171)
                      .+..+|||||||+|.++..|++.. +..+|+|+|+|+.|++.+++..........++.++++|.+.+|+++      ++|
T Consensus        35 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  114 (299)
T 3g5t_A           35 GERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGSPDTYKNVSFKISSSDDFKFLGADSVDKQKI  114 (299)
T ss_dssp             SCCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHCC-CCTTEEEEECCTTCCGGGCTTTTTSSCE
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhccCCCCceEEEEcCHHhCCccccccccCCCe
Confidence            467899999999999999999643 6689999999999999998754310011347889999999999887      899


Q ss_pred             ceEEEecc
Q 030823          163 CRFFVLAL  170 (171)
Q Consensus       163 DlV~s~~~  170 (171)
                      |+|+++.+
T Consensus       115 D~V~~~~~  122 (299)
T 3g5t_A          115 DMITAVEC  122 (299)
T ss_dssp             EEEEEESC
T ss_pred             eEEeHhhH
Confidence            99999753

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=99.41  E-value=1.7e-12  Score=99.74  Aligned_cols=76  Identities=13%  Similarity=-0.044  Sum_probs=63.7

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+..+|||+|||+|.++..+.+.+. .+|+++|+|+.|++.+++...    ...++.++++|...+|+++++||+|+++
T Consensus        40 ~~~~~~vLdiGcG~G~~~~~l~~~~~-~~v~~~D~s~~~~~~a~~~~~----~~~~i~~~~~d~~~~~~~~~~fD~v~~~  114 (215)
T 2pxx_A           40 LRPEDRILVLGCGNSALSYELFLGGF-PNVTSVDYSSVVVAAMQACYA----HVPQLRWETMDVRKLDFPSASFDVVLEK  114 (215)
T ss_dssp             CCTTCCEEEETCTTCSHHHHHHHTTC-CCEEEEESCHHHHHHHHHHTT----TCTTCEEEECCTTSCCSCSSCEEEEEEE
T ss_pred             cCCCCeEEEECCCCcHHHHHHHHcCC-CcEEEEeCCHHHHHHHHHhcc----cCCCcEEEEcchhcCCCCCCcccEEEEC
Confidence            35668999999999999999987543 389999999999999987532    2236788999999999999999999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       115 ~  115 (215)
T 2pxx_A          115 G  115 (215)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=99.41  E-value=2.4e-12  Score=103.10  Aligned_cols=89  Identities=11%  Similarity=0.123  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE  153 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e  153 (171)
                      .+.+.+++.+.  ..+..+|||||||+|.++..+.+.. ..+|+++|+|++|++.+++...   ..+.  ++.++++|.+
T Consensus        48 ~~~~~l~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~~~~~d~~  121 (273)
T 3bus_A           48 RLTDEMIALLD--VRSGDRVLDVGCGIGKPAVRLATAR-DVRVTGISISRPQVNQANARAT---AAGLANRVTFSYADAM  121 (273)
T ss_dssp             HHHHHHHHHSC--CCTTCEEEEESCTTSHHHHHHHHHS-CCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECCTT
T ss_pred             HHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHHH---hcCCCcceEEEECccc
Confidence            33444444332  2456899999999999999998754 4799999999999999987542   1222  4888999999


Q ss_pred             CCCCCCCccceEEEecc
Q 030823          154 FLPLKERYACRFFVLAL  170 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~~  170 (171)
                      .+|+++++||+|+++.+
T Consensus       122 ~~~~~~~~fD~v~~~~~  138 (273)
T 3bus_A          122 DLPFEDASFDAVWALES  138 (273)
T ss_dssp             SCCSCTTCEEEEEEESC
T ss_pred             cCCCCCCCccEEEEech
Confidence            99999999999998753

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.41  E-value=1.3e-12  Score=104.82  Aligned_cols=109  Identities=18%  Similarity=0.174  Sum_probs=76.1

Q ss_pred             CCCccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC
Q 030823           44 GSSRVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT  123 (171)
Q Consensus        44 ~~~~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~  123 (171)
                      ++.+...||+....|+...      ....+ ....+.+.+.+.....+..+|||||||+|.++..+.+.  ..+|+|+|+
T Consensus        14 ~~~~~~~~~~~a~~Yd~~~------~~~~~-~~~~~~~~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~   84 (260)
T 2avn_A           14 KLRSWEFYDRIARAYDSMY------ETPKW-KLYHRLIGSFLEEYLKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDP   84 (260)
T ss_dssp             ECCHHHHHHHHHHHHGGGG------CSHHH-HHHHHHHHHHHHHHCCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEES
T ss_pred             hhhhcchhhHHHHHHHHhc------cccch-hHHHHHHHHHHHHhcCCCCeEEEeCCCcCHHHHHHHHc--CCeEEEEeC
Confidence            3456677888776664321      11222 11112222223322236789999999999999999875  369999999


Q ss_pred             CHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          124 SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       124 S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      |++|++.+++..     ..   .++++|.+.+|+++++||+|+++.
T Consensus        85 s~~~l~~a~~~~-----~~---~~~~~d~~~~~~~~~~fD~v~~~~  122 (260)
T 2avn_A           85 SKEMLEVAREKG-----VK---NVVEAKAEDLPFPSGAFEAVLALG  122 (260)
T ss_dssp             CHHHHHHHHHHT-----CS---CEEECCTTSCCSCTTCEEEEEECS
T ss_pred             CHHHHHHHHhhc-----CC---CEEECcHHHCCCCCCCEEEEEEcc
Confidence            999999998743     11   278999999999999999999864

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=99.41  E-value=1.5e-12  Score=102.42  Aligned_cols=70  Identities=13%  Similarity=-0.017  Sum_probs=61.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC-CCCCCC-CCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE-EFLPLK-ERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~-e~LPf~-~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+.+.  ..+|+++|+|+.|++.+++.       ..++.++++|. +.+|++ +++||+|++
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~-------~~~~~~~~~d~~~~~~~~~~~~fD~v~~  117 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQ--AARWAAYDFSPELLKLARAN-------APHADVYEWNGKGELPAGLGAPFGLIVS  117 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHH-------CTTSEEEECCSCSSCCTTCCCCEEEEEE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHh-------CCCceEEEcchhhccCCcCCCCEEEEEe
Confidence            56689999999999999999985  36999999999999999863       23578899999 789998 899999998


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus       118 ~  118 (226)
T 3m33_A          118 R  118 (226)
T ss_dssp             E
T ss_pred             C
Confidence            6

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=99.41  E-value=8e-13  Score=107.01  Aligned_cols=115  Identities=17%  Similarity=0.118  Sum_probs=75.5

Q ss_pred             ccccccHHHHHHHHHHHHHhCCC-ChHHHHHHHHH-HHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823           47 RVSIFDRHLKRKQRDRAAWLTRP-NDSFVDAVAEN-LLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (171)
Q Consensus        47 ~~~iFDr~~~~~~r~ra~~~~~~-~~~l~~~va~~-l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S  124 (171)
                      ....||+....+...    .+.. ...+...+... +...+..+..+..+|||||||+|.++..+.+.  ..+|+|+|+|
T Consensus        26 ~~~~fd~~a~~y~~~----~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s   99 (285)
T 4htf_A           26 QDRNFDDIAEKFSRN----IYGTTKGQLRQAILWQDLDRVLAEMGPQKLRVLDAGGGEGQTAIKMAER--GHQVILCDLS   99 (285)
T ss_dssp             ------CHHHHHHSC----TTSCHHHHHHHHHHHHHHHHHHHHTCSSCCEEEEETCTTCHHHHHHHHT--TCEEEEEESC
T ss_pred             cccchhhHHHHHHHH----hccCCcchHHHHHHHHHHHHHHHhcCCCCCEEEEeCCcchHHHHHHHHC--CCEEEEEECC
Confidence            344677766554421    1111 12333333322 22333334445679999999999999999885  4699999999


Q ss_pred             HHHHHHHHHhhhhhccCC--CceeEEEccCCCCC-CCCCccceEEEecc
Q 030823          125 YDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLP-LKERYACRFFVLAL  170 (171)
Q Consensus       125 ~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LP-f~~~sfDlV~s~~~  170 (171)
                      ++|++.+++...   ..+  .++.++++|.+.+| +++++||+|+++.+
T Consensus       100 ~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~~~~~  145 (285)
T 4htf_A          100 AQMIDRAKQAAE---AKGVSDNMQFIHCAAQDVASHLETPVDLILFHAV  145 (285)
T ss_dssp             HHHHHHHHHHHH---C-CCGGGEEEEESCGGGTGGGCSSCEEEEEEESC
T ss_pred             HHHHHHHHHHHH---hcCCCcceEEEEcCHHHhhhhcCCCceEEEECch
Confidence            999999987542   233  35789999999998 88999999999754

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=99.40  E-value=3e-12  Score=105.36  Aligned_cols=98  Identities=16%  Similarity=0.126  Sum_probs=73.2

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc-----CCCce
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-----DNIET  145 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~-----~~~~~  145 (171)
                      +++++.+...+++++.....+..+|||+|||+|.++..+.+. +..+|+++|+|++|++.+++.......     ...++
T Consensus        14 ~~~k~~l~~~~~~~l~~~~~~~~~VLDlGcG~G~~~~~l~~~-~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~   92 (313)
T 3bgv_A           14 NWMKSVLIGEFLEKVRQKKKRDITVLDLGCGKGGDLLKWKKG-RINKLVCTDIADVSVKQCQQRYEDMKNRRDSEYIFSA   92 (313)
T ss_dssp             HHHHHHHHHHHHHHHHHTC--CCEEEEETCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHHSSSCC-CCCEE
T ss_pred             HHHHHHHHHHHHHHhhhccCCCCEEEEECCCCcHHHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhhhcccccccceE
Confidence            455666777777777655456789999999999999999863 457999999999999999875421000     12257


Q ss_pred             eEEEccCCCCC----CC--CCccceEEEec
Q 030823          146 CFVVGDEEFLP----LK--ERYACRFFVLA  169 (171)
Q Consensus       146 ~~~~~D~e~LP----f~--~~sfDlV~s~~  169 (171)
                      .++++|.+.+|    ++  +++||+|+++.
T Consensus        93 ~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~  122 (313)
T 3bgv_A           93 EFITADSSKELLIDKFRDPQMCFDICSCQF  122 (313)
T ss_dssp             EEEECCTTTSCSTTTCSSTTCCEEEEEEET
T ss_pred             EEEEecccccchhhhcccCCCCEEEEEEec
Confidence            88999999886    64  45999999875

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=99.40  E-value=1.6e-12  Score=103.23  Aligned_cols=97  Identities=8%  Similarity=0.016  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHHHHHhc---c-cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ce
Q 030823           71 DSFVDAVAENLLDRLEDC---R-KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ET  145 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i---~-~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~  145 (171)
                      ....+.....+.+.+...   . .+..+|||+|||+|.++..|+...+..+|+++|+|++|++.+++....   .+. ++
T Consensus        46 ~~~~~~~~~~~~d~l~~~~~~~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~v  122 (240)
T 1xdz_A           46 TEKKEVYLKHFYDSITAAFYVDFNQVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEA---LQLENT  122 (240)
T ss_dssp             CSHHHHHHHTHHHHHGGGGTSCGGGCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHH---HTCSSE
T ss_pred             CCHHHHHHHHHHHHHhHHHhcccCCCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCE
Confidence            334444444555544322   1 256799999999999999998544667999999999999999875421   222 58


Q ss_pred             eEEEccCCCCCCC---CCccceEEEecc
Q 030823          146 CFVVGDEEFLPLK---ERYACRFFVLAL  170 (171)
Q Consensus       146 ~~~~~D~e~LPf~---~~sfDlV~s~~~  170 (171)
                      .++++|.+.++++   +++||+|++.++
T Consensus       123 ~~~~~d~~~~~~~~~~~~~fD~V~~~~~  150 (240)
T 1xdz_A          123 TFCHDRAETFGQRKDVRESYDIVTARAV  150 (240)
T ss_dssp             EEEESCHHHHTTCTTTTTCEEEEEEECC
T ss_pred             EEEeccHHHhcccccccCCccEEEEecc
Confidence            8899999888864   689999999764

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=99.39  E-value=2.1e-12  Score=101.03  Aligned_cols=83  Identities=8%  Similarity=0.007  Sum_probs=65.2

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf  157 (171)
                      .+.+.+.+... .+..+|||||||+|.++..+.+.+  .+|+|+|+|++|++.+++..     .. ++.++++|.+.+ +
T Consensus        30 ~~~~~~~l~~~-~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~~~-----~~-~v~~~~~d~~~~-~   99 (250)
T 2p7i_A           30 HPFMVRAFTPF-FRPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRL-----KD-GITYIHSRFEDA-Q   99 (250)
T ss_dssp             HHHHHHHHGGG-CCSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHS-----CS-CEEEEESCGGGC-C
T ss_pred             HHHHHHHHHhh-cCCCcEEEECCCCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhh-----hC-CeEEEEccHHHc-C
Confidence            34444444433 245789999999999999998854  48999999999999998743     22 688899999888 4


Q ss_pred             CCCccceEEEecc
Q 030823          158 KERYACRFFVLAL  170 (171)
Q Consensus       158 ~~~sfDlV~s~~~  170 (171)
                      ++++||+|+++.+
T Consensus       100 ~~~~fD~v~~~~~  112 (250)
T 2p7i_A          100 LPRRYDNIVLTHV  112 (250)
T ss_dssp             CSSCEEEEEEESC
T ss_pred             cCCcccEEEEhhH
Confidence            7899999999754

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=99.39  E-value=7.6e-13  Score=107.16  Aligned_cols=78  Identities=9%  Similarity=-0.073  Sum_probs=62.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh---------hc------cCCCceeEEEccCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---------AH------NDNIETCFVVGDEEF  154 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~---------~~------~~~~~~~~~~~D~e~  154 (171)
                      .+..+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.|+++...         ..      ....++.++++|...
T Consensus        67 ~~~~~vLD~GCG~G~~~~~La~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~D~~~  144 (252)
T 2gb4_A           67 QSGLRVFFPLCGKAIEMKWFADRG--HTVVGVEISEIGIREFFAEQNLSYTEEPLAEIAGAKVFKSSSGSISLYCCSIFD  144 (252)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCTTT
T ss_pred             CCCCeEEEeCCCCcHHHHHHHHCC--CeEEEEECCHHHHHHHHHhcccccccccccccccccccccCCCceEEEECcccc
Confidence            356899999999999999999854  5999999999999999764210         00      013468899999999


Q ss_pred             CCCCC-CccceEEEec
Q 030823          155 LPLKE-RYACRFFVLA  169 (171)
Q Consensus       155 LPf~~-~sfDlV~s~~  169 (171)
                      +|+++ ++||+|++.+
T Consensus       145 l~~~~~~~FD~V~~~~  160 (252)
T 2gb4_A          145 LPRANIGKFDRIWDRG  160 (252)
T ss_dssp             GGGGCCCCEEEEEESS
T ss_pred             CCcccCCCEEEEEEhh
Confidence            99875 8999999764

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=99.39  E-value=2.2e-12  Score=97.93  Aligned_cols=74  Identities=12%  Similarity=-0.014  Sum_probs=60.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCC-CCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLP-LKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LP-f~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..|++.  ..+|+|+|+|++|++.|++....   .+ .++.+++.+.+.++ +.+++||+|++
T Consensus        21 ~~~~~vLDiGcG~G~~~~~la~~--~~~v~~vD~s~~~l~~a~~~~~~---~~~~~v~~~~~~~~~l~~~~~~~fD~v~~   95 (185)
T 3mti_A           21 DDESIVVDATMGNGNDTAFLAGL--SKKVYAFDVQEQALGKTSQRLSD---LGIENTELILDGHENLDHYVREPIRAAIF   95 (185)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHHH---HTCCCEEEEESCGGGGGGTCCSCEEEEEE
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHHH---cCCCcEEEEeCcHHHHHhhccCCcCEEEE
Confidence            46689999999999999999985  58999999999999999875431   22 35778888877764 55889999998


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus        96 ~   96 (185)
T 3mti_A           96 N   96 (185)
T ss_dssp             E
T ss_pred             e
Confidence            6

>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A*

Probab=99.39  E-value=3e-12  Score=101.40  Aligned_cols=75  Identities=15%  Similarity=0.135  Sum_probs=63.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++....   .+ .++.++++|.+.+|+++++||+|+++
T Consensus        20 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~fD~v~~~   94 (239)
T 1xxl_A           20 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQE---KGVENVRFQQGTAESLPFPDDSFDIITCR   94 (239)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH---HTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCCCEEEEEccCcCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHHH---cCCCCeEEEecccccCCCCCCcEEEEEEC
Confidence            466899999999999999998854  5999999999999999875421   22 25888999999999999999999998


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus        95 ~   95 (239)
T 1xxl_A           95 Y   95 (239)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=99.38  E-value=1.8e-12  Score=102.88  Aligned_cols=74  Identities=18%  Similarity=0.112  Sum_probs=64.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||+|||+|.++..+++.+. .+|+|+|+|++|++.+++..     ...++.++++|.+.+|+++++||+|+++.+
T Consensus        44 ~~~~vLD~GcG~G~~~~~l~~~~~-~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  117 (253)
T 3g5l_A           44 NQKTVLDLGCGFGWHCIYAAEHGA-KKVLGIDLSERMLTEAKRKT-----TSPVVCYEQKAIEDIAIEPDAYNVVLSSLA  117 (253)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTTC-SEEEEEESCHHHHHHHHHHC-----CCTTEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHcCC-CEEEEEECCHHHHHHHHHhh-----ccCCeEEEEcchhhCCCCCCCeEEEEEchh
Confidence            568999999999999999988642 39999999999999998743     245688999999999999999999999764

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=99.38  E-value=1e-12  Score=117.48  Aligned_cols=75  Identities=19%  Similarity=0.220  Sum_probs=64.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCC--CCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFL--PLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~L--Pf~~~sfDlV~s  167 (171)
                      ...+|||||||+|.++..|++.+  ..|+|+|+|+.||+.|+.+..   ..+ .++.|.++++|.+  ++++++||+|++
T Consensus        66 ~~~~vLDvGCG~G~~~~~la~~g--a~V~giD~~~~~i~~a~~~a~---~~~~~~~~~~~~~~~~~~~~~~~~~fD~v~~  140 (569)
T 4azs_A           66 RPLNVLDLGCAQGFFSLSLASKG--ATIVGIDFQQENINVCRALAE---ENPDFAAEFRVGRIEEVIAALEEGEFDLAIG  140 (569)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---TSTTSEEEEEECCHHHHHHHCCTTSCSEEEE
T ss_pred             CCCeEEEECCCCcHHHHHHHhCC--CEEEEECCCHHHHHHHHHHHH---hcCCCceEEEECCHHHHhhhccCCCccEEEE
Confidence            45799999999999999999854  799999999999999987542   233 5899999999988  678899999999


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       141 ~e~  143 (569)
T 4azs_A          141 LSV  143 (569)
T ss_dssp             ESC
T ss_pred             Ccc
Confidence            864

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=99.38  E-value=2.2e-12  Score=104.94  Aligned_cols=88  Identities=13%  Similarity=0.011  Sum_probs=69.0

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP  156 (171)
                      ...+.+.+..+ .+..+|||+|||+|.++..+++..+ ..+|+|+|+|+.|++.+++...   ..+.++.++++|.+.+|
T Consensus        10 ~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~v~~~~~d~~~~~   85 (284)
T 3gu3_A           10 VSFLVNTVWKI-TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR---LLPYDSEFLEGDATEIE   85 (284)
T ss_dssp             HHHHHHTTSCC-CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHH---SSSSEEEEEESCTTTCC
T ss_pred             HHHHHHHHhcc-CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---hcCCceEEEEcchhhcC
Confidence            34444444322 3568999999999999999988655 4799999999999999987542   23347899999999999


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                      + +++||+|+++.+
T Consensus        86 ~-~~~fD~v~~~~~   98 (284)
T 3gu3_A           86 L-NDKYDIAICHAF   98 (284)
T ss_dssp             C-SSCEEEEEEESC
T ss_pred             c-CCCeeEEEECCh
Confidence            8 579999999764

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=99.38  E-value=3.7e-12  Score=99.77  Aligned_cols=87  Identities=13%  Similarity=0.092  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP  156 (171)
                      ..+.+.+.+.....+..+|||+|||+|.++..+.+.+  .+++++|+|+.|++.+++...   ..+.++.++++|.+.+|
T Consensus        23 ~~~~~~~~l~~~~~~~~~vLdiG~G~G~~~~~l~~~~--~~~~~~D~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~   97 (246)
T 1y8c_A           23 WSDFIIEKCVENNLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFR---SQGLKPRLACQDISNLN   97 (246)
T ss_dssp             HHHHHHHHHHTTTCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHH---HTTCCCEEECCCGGGCC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHCC--CcEEEEECCHHHHHHHHHHHh---hcCCCeEEEecccccCC
Confidence            3334444443322356899999999999999998853  689999999999999987542   23336788999999999


Q ss_pred             CCCCccceEEEec
Q 030823          157 LKERYACRFFVLA  169 (171)
Q Consensus       157 f~~~sfDlV~s~~  169 (171)
                      ++ ++||+|+++.
T Consensus        98 ~~-~~fD~v~~~~  109 (246)
T 1y8c_A           98 IN-RKFDLITCCL  109 (246)
T ss_dssp             CS-CCEEEEEECT
T ss_pred             cc-CCceEEEEcC
Confidence            87 8999999874

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=99.38  E-value=8.2e-12  Score=98.70  Aligned_cols=77  Identities=12%  Similarity=0.042  Sum_probs=63.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..|.+.+ ..+|+++|+|++|++.+++....  ....++.++++|.+.+++++++||+|+++.+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~~--~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  155 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLGE--EGKRVRNYFCCGLQDFTPEPDSYDVIWIQWV  155 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTGG--GGGGEEEEEECCGGGCCCCSSCEEEEEEESC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc-CCEEEEEeCCHHHHHHHHHHhhh--cCCceEEEEEcChhhcCCCCCCEEEEEEcch
Confidence            46899999999999999988754 46999999999999999875421  1123577899999999998899999998753

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=99.37  E-value=2.5e-12  Score=105.93  Aligned_cols=77  Identities=9%  Similarity=-0.115  Sum_probs=64.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+++.. ..+|+|+|+|++|++.+++...   ..+.  ++.++++|.+.+|+++++||+|++
T Consensus       116 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~fD~V~~  191 (312)
T 3vc1_A          116 GPDDTLVDAGCGRGGSMVMAHRRF-GSRVEGVTLSAAQADFGNRRAR---ELRIDDHVRSRVCNMLDTPFDKGAVTASWN  191 (312)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECCTTSCCCCTTCEEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHHc-CCEEEEEeCCHHHHHHHHHHHH---HcCCCCceEEEECChhcCCCCCCCEeEEEE
Confidence            356799999999999999998753 3699999999999999987542   2332  588999999999999999999999


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       192 ~~~  194 (312)
T 3vc1_A          192 NES  194 (312)
T ss_dssp             ESC
T ss_pred             CCc
Confidence            753

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=99.37  E-value=3.1e-12  Score=99.23  Aligned_cols=78  Identities=15%  Similarity=0.105  Sum_probs=65.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+.+.+ +..+|+++|+|++|++.+++....   .+. ++.++++|.+.+|+++++||+|++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~  112 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNK---LGLKNVEVLKSEENKIPLPDNTVDFIFM  112 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHH---HTCTTEEEEECBTTBCSSCSSCEEEEEE
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH---cCCCcEEEEecccccCCCCCCCeeEEEe
Confidence            456799999999999999998754 557999999999999999875421   222 588899999999999999999999


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       113 ~~~  115 (219)
T 3dh0_A          113 AFT  115 (219)
T ss_dssp             ESC
T ss_pred             ehh
Confidence            754

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=99.37  E-value=6.5e-13  Score=107.39  Aligned_cols=81  Identities=17%  Similarity=0.176  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf  157 (171)
                      ++.+.+.+.  ..+..+|||||||+|.++..+.+  +..+|+|+|+|++|++.+++..       .++.++++|.+.+|+
T Consensus        46 ~~~l~~~l~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~  114 (279)
T 3ccf_A           46 GEDLLQLLN--PQPGEFILDLGCGTGQLTEKIAQ--SGAEVLGTDNAATMIEKARQNY-------PHLHFDVADARNFRV  114 (279)
T ss_dssp             CCHHHHHHC--CCTTCEEEEETCTTSHHHHHHHH--TTCEEEEEESCHHHHHHHHHHC-------TTSCEEECCTTTCCC
T ss_pred             HHHHHHHhC--CCCCCEEEEecCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHhhC-------CCCEEEECChhhCCc
Confidence            344444443  24568999999999999999988  4579999999999999998632       357789999999998


Q ss_pred             CCCccceEEEecc
Q 030823          158 KERYACRFFVLAL  170 (171)
Q Consensus       158 ~~~sfDlV~s~~~  170 (171)
                       +++||+|+++.+
T Consensus       115 -~~~fD~v~~~~~  126 (279)
T 3ccf_A          115 -DKPLDAVFSNAM  126 (279)
T ss_dssp             -SSCEEEEEEESC
T ss_pred             -CCCcCEEEEcch
Confidence             689999999753

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=99.36  E-value=5.7e-12  Score=102.41  Aligned_cols=94  Identities=12%  Similarity=-0.024  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHh--cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC
Q 030823           75 DAVAENLLDRLED--CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (171)
Q Consensus        75 ~~va~~l~~rL~~--i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~  152 (171)
                      ....+.+++.+..  -..+..+|||+|||+|.++..|.+.. ..+|+|+|+|+.|++.+++.... .....++.++++|.
T Consensus        64 ~~~~~~l~~~l~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~~~~~~~d~  141 (297)
T 2o57_A           64 LRTDEWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNNQ-AGLADNITVKYGSF  141 (297)
T ss_dssp             HHHHHHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHHH-HTCTTTEEEEECCT
T ss_pred             HHHHHHHHHHhhhccCCCCCCEEEEeCCCCCHHHHHHHHHh-CCEEEEEeCCHHHHHHHHHHHHh-cCCCcceEEEEcCc
Confidence            3344555555420  12456899999999999999998753 25999999999999999875421 01123588899999


Q ss_pred             CCCCCCCCccceEEEecc
Q 030823          153 EFLPLKERYACRFFVLAL  170 (171)
Q Consensus       153 e~LPf~~~sfDlV~s~~~  170 (171)
                      +.+|+++++||+|+++.+
T Consensus       142 ~~~~~~~~~fD~v~~~~~  159 (297)
T 2o57_A          142 LEIPCEDNSYDFIWSQDA  159 (297)
T ss_dssp             TSCSSCTTCEEEEEEESC
T ss_pred             ccCCCCCCCEeEEEecch
Confidence            999999999999999753

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.36  E-value=1.7e-12  Score=99.77  Aligned_cols=70  Identities=10%  Similarity=0.030  Sum_probs=61.3

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ..+|||+|||+|.++..|.+.  ..+|+|+|+|++|++.+++.       ..++.++++|.+.+|+++++||+|+++.+
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~-------~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASL--GHQIEGLEPATRLVELARQT-------HPSVTFHHGTITDLSDSPKRWAGLLAWYS  111 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHT--TCCEEEECCCHHHHHHHHHH-------CTTSEEECCCGGGGGGSCCCEEEEEEESS
T ss_pred             CCeEEEecCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHHh-------CCCCeEEeCcccccccCCCCeEEEEehhh
Confidence            589999999999999999885  35999999999999999863       23577899999999999999999999753

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=99.36  E-value=4.4e-12  Score=98.39  Aligned_cols=71  Identities=14%  Similarity=0.048  Sum_probs=61.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||+|||+|.++..|.+.  ..+|+|+|+|++|++.+++..     . .++.++++|.+.+|++ ++||+|+++.+
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~-----~-~~~~~~~~d~~~~~~~-~~fD~v~~~~~  115 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLA--GRTVYGIEPSREMRMIAKEKL-----P-KEFSITEGDFLSFEVP-TSIDTIVSTYA  115 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHT--TCEEEEECSCHHHHHHHHHHS-----C-TTCCEESCCSSSCCCC-SCCSEEEEESC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhC--CCeEEEEeCCHHHHHHHHHhC-----C-CceEEEeCChhhcCCC-CCeEEEEECcc
Confidence            5689999999999999999885  469999999999999998742     2 3577899999999988 99999999753

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=99.36  E-value=6.1e-12  Score=99.46  Aligned_cols=76  Identities=13%  Similarity=0.047  Sum_probs=63.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..|.+.+ ..+|+++|+|+.|++.+++...    ...++.++++|.+.+|+++++||+|+++.
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  166 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELA----GMPVGKFILASMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTT----TSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh-cCEEEEEeCCHHHHHHHHHHhc----cCCceEEEEccHHHCCCCCCCeEEEEEcc
Confidence            356899999999999999998754 4689999999999999987542    11468889999999999999999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       167 ~  167 (254)
T 1xtp_A          167 T  167 (254)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=99.36  E-value=3.2e-12  Score=102.70  Aligned_cols=78  Identities=17%  Similarity=0.199  Sum_probs=66.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|.++..+.+.++..+|+++|+|+.|++.+++...   ..++ ++.++++|.+.+|+++++||+|+++
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~  112 (276)
T 3mgg_A           36 PPGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTE---KNGIKNVKFLQANIFSLPFEDSSFDHIFVC  112 (276)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEECCGGGCCSCTTCEEEEEEE
T ss_pred             CCCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEcccccCCCCCCCeeEEEEe
Confidence            45689999999999999999887667899999999999999987542   1232 6888999999999999999999987


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus       113 ~~  114 (276)
T 3mgg_A          113 FV  114 (276)
T ss_dssp             SC
T ss_pred             ch
Confidence            53

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=99.35  E-value=4.2e-12  Score=98.94  Aligned_cols=78  Identities=13%  Similarity=0.057  Sum_probs=65.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCC--CCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      .+..+|||||||+|.++..+++..+..+|+|+|+|++|+..+++....   .+ .++.++++|...++  +++++||+|+
T Consensus        40 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~~D~i~  116 (214)
T 1yzh_A           40 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLE---VGVPNIKLLWVDGSDLTDYFEDGEIDRLY  116 (214)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---HCCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHH---cCCCCEEEEeCCHHHHHhhcCCCCCCEEE
Confidence            456899999999999999998876678999999999999999875421   22 36888999999888  8889999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++..
T Consensus       117 ~~~~  120 (214)
T 1yzh_A          117 LNFS  120 (214)
T ss_dssp             EESC
T ss_pred             EECC
Confidence            8753

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=99.35  E-value=4.5e-12  Score=96.08  Aligned_cols=76  Identities=20%  Similarity=0.174  Sum_probs=60.0

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK  158 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~  158 (171)
                      +.+++.+.....+..+|||+|||+|.++..+++.+   +|+|+|+|++|++.  .       .  ++.++++|.+. |++
T Consensus        11 ~~l~~~l~~~~~~~~~vLD~GcG~G~~~~~l~~~~---~v~gvD~s~~~~~~--~-------~--~~~~~~~d~~~-~~~   75 (170)
T 3q87_B           11 YTLMDALEREGLEMKIVLDLGTSTGVITEQLRKRN---TVVSTDLNIRALES--H-------R--GGNLVRADLLC-SIN   75 (170)
T ss_dssp             HHHHHHHHHHTCCSCEEEEETCTTCHHHHHHTTTS---EEEEEESCHHHHHT--C-------S--SSCEEECSTTT-TBC
T ss_pred             HHHHHHHHhhcCCCCeEEEeccCccHHHHHHHhcC---cEEEEECCHHHHhc--c-------c--CCeEEECChhh-hcc
Confidence            34444444323456799999999999999999854   99999999999987  1       1  36779999987 777


Q ss_pred             CCccceEEEec
Q 030823          159 ERYACRFFVLA  169 (171)
Q Consensus       159 ~~sfDlV~s~~  169 (171)
                      +++||+|+++.
T Consensus        76 ~~~fD~i~~n~   86 (170)
T 3q87_B           76 QESVDVVVFNP   86 (170)
T ss_dssp             GGGCSEEEECC
T ss_pred             cCCCCEEEECC
Confidence            89999999974

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=99.35  E-value=1.8e-12  Score=105.78  Aligned_cols=81  Identities=9%  Similarity=0.058  Sum_probs=54.0

Q ss_pred             cCCCeEEEEcCCCcHHHHH----HhhcCCCcEE--EEEeCCHHHHHHHHHhhhhh-ccCCCceeEEEccCCCCC------
Q 030823           90 KTFPTALCLGGSLEAVRRL----LRGRGGIEKL--IMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDEEFLP------  156 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~----L~~~~~~~~v--~gvD~S~~mL~~a~~~~~~~-~~~~~~~~~~~~D~e~LP------  156 (171)
                      .+..+|||||||||.++..    +...++...|  +++|+|++|++.++++.... ....+.+.+..++.+.++      
T Consensus        51 ~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~~~vD~S~~ml~~a~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  130 (292)
T 2aot_A           51 KSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKTSNLENVKFAWHKETSSEYQSRMLEK  130 (292)
T ss_dssp             CSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECSCHHHHHHHHHHHHTCSSCTTEEEEEECSCHHHHHHHHHTT
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeEEEEeCCHHHHHHHHHHHHhccCCCcceEEEEecchhhhhhhhccc
Confidence            3456899999999976543    3333333444  99999999999998754210 001223444566666554      


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                      +++++||+|+++.+
T Consensus       131 ~~~~~fD~V~~~~~  144 (292)
T 2aot_A          131 KELQKWDFIHMIQM  144 (292)
T ss_dssp             TCCCCEEEEEEESC
T ss_pred             cCCCceeEEEEeee
Confidence            67899999999853

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=99.34  E-value=9.4e-12  Score=95.80  Aligned_cols=76  Identities=12%  Similarity=-0.009  Sum_probs=62.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..++...+..+++++|+|++|++.+++...   ..+. ++.++.+|.+.++ ++++||+|++++
T Consensus        65 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~v~~~~~d~~~~~-~~~~~D~i~~~~  140 (207)
T 1jsx_A           65 QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQH---ELKLENIEPVQSRVEEFP-SEPPFDGVISRA  140 (207)
T ss_dssp             CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH---HTTCSSEEEEECCTTTSC-CCSCEEEEECSC
T ss_pred             CCCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCeEEEecchhhCC-ccCCcCEEEEec
Confidence            3579999999999999999876566899999999999999987542   2233 4788999998877 568999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       141 ~  141 (207)
T 1jsx_A          141 F  141 (207)
T ss_dssp             S
T ss_pred             c
Confidence            4

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=99.34  E-value=2.8e-12  Score=98.61  Aligned_cols=75  Identities=17%  Similarity=0.122  Sum_probs=60.3

Q ss_pred             cCCCeEEEEcCCCcHHH-HHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVR-RLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~-~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++ ..+..  ...+|+++|+|++|++.+++...   ..+.++.++++|.+.+|+++++||+|+++
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~--~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~   96 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVE--DGYKTYGIEISDLQLKKAENFSR---ENNFKLNISKGDIRKLPFKDESMSFVYSY   96 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHH--TTCEEEEEECCHHHHHHHHHHHH---HHTCCCCEEECCTTSCCSCTTCEEEEEEC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHh--CCCEEEEEECCHHHHHHHHHHHH---hcCCceEEEECchhhCCCCCCceeEEEEc
Confidence            35689999999999984 44544  34699999999999999987542   12345778999999999999999999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus        97 ~   97 (209)
T 2p8j_A           97 G   97 (209)
T ss_dssp             S
T ss_pred             C
Confidence            4

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=99.34  E-value=8.6e-12  Score=97.02  Aligned_cols=76  Identities=13%  Similarity=0.129  Sum_probs=64.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC------ceeEEEccCCCCCCCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI------ETCFVVGDEEFLPLKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~------~~~~~~~D~e~LPf~~~sfD  163 (171)
                      .+..+|||+|||+|.++..+++.  ..+|+++|+|+.|++.+++...   ..+.      ++.++++|.+.+|+++++||
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D  103 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASK--GYSVTGIDINSEAIRLAETAAR---SPGLNQKTGGKAEFKVENASSLSFHDSSFD  103 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTT---CCSCCSSSSCEEEEEECCTTSCCSCTTCEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhC--CCeEEEEECCHHHHHHHHHHHH---hcCCccccCcceEEEEecccccCCCCCcee
Confidence            45689999999999999999885  4699999999999999987542   2222      47889999999999999999


Q ss_pred             eEEEecc
Q 030823          164 RFFVLAL  170 (171)
Q Consensus       164 lV~s~~~  170 (171)
                      +|+++.+
T Consensus       104 ~v~~~~~  110 (235)
T 3sm3_A          104 FAVMQAF  110 (235)
T ss_dssp             EEEEESC
T ss_pred             EEEEcch
Confidence            9998753

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=99.33  E-value=6.6e-12  Score=96.94  Aligned_cols=70  Identities=17%  Similarity=0.103  Sum_probs=59.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..+    ...+++++|+|++|++.+++..       .++.++++|.+.+|+++++||+|+++.
T Consensus        35 ~~~~~vLdiG~G~G~~~~~l----~~~~v~~vD~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~fD~v~~~~  103 (211)
T 2gs9_A           35 PPGESLLEVGAGTGYWLRRL----PYPQKVGVEPSEAMLAVGRRRA-------PEATWVRAWGEALPFPGESFDVVLLFT  103 (211)
T ss_dssp             CCCSEEEEETCTTCHHHHHC----CCSEEEEECCCHHHHHHHHHHC-------TTSEEECCCTTSCCSCSSCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHhHHhC----CCCeEEEEeCCHHHHHHHHHhC-------CCcEEEEcccccCCCCCCcEEEEEEcC
Confidence            36789999999999999888    2249999999999999998631       346788999999999999999999976


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       104 ~  104 (211)
T 2gs9_A          104 T  104 (211)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=99.33  E-value=7.7e-12  Score=97.86  Aligned_cols=69  Identities=13%  Similarity=0.043  Sum_probs=59.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++..       .++.++++|.+.+|+ +++||+|+++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~~D~s~~~~~~a~~~~-------~~~~~~~~d~~~~~~-~~~~D~v~~~  107 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEF--GDTAGLELSEDMLTHARKRL-------PDATLHQGDMRDFRL-GRKFSAVVSM  107 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHH--SEEEEEESCHHHHHHHHHHC-------TTCEEEECCTTTCCC-SSCEEEEEEC
T ss_pred             CCCCeEEEecccCCHHHHHHHHhC--CcEEEEeCCHHHHHHHHHhC-------CCCEEEECCHHHccc-CCCCcEEEEc
Confidence            566899999999999999998754  49999999999999998632       247789999999998 7899999953

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=99.32  E-value=2.2e-12  Score=101.40  Aligned_cols=74  Identities=8%  Similarity=-0.062  Sum_probs=56.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf~~~sfDlV  165 (171)
                      .+..+|||+|||||.++..+++..+.++|+|+|+|++|++...+...    ...++.++++|...    .|++ ++||+|
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~~~a~----~~~~v~~~~~d~~~~~~~~~~~-~~fD~V  130 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR----ERNNIIPLLFDASKPWKYSGIV-EKVDLI  130 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH----HCSSEEEECSCTTCGGGTTTTC-CCEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHh----cCCCeEEEEcCCCCchhhcccc-cceeEE
Confidence            45679999999999999999875445799999999998765443221    11257778888876    3554 899999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +++
T Consensus       131 ~~~  133 (210)
T 1nt2_A          131 YQD  133 (210)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            986

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=99.32  E-value=5.3e-12  Score=99.30  Aligned_cols=77  Identities=13%  Similarity=-0.024  Sum_probs=61.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..|.+  +..+|+|+|+|+.|++.+++.... .....++.++++|...++ ++++||+|+++.
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~gvD~s~~~~~~a~~~~~~-~~~~~~v~~~~~d~~~~~-~~~~fD~v~~~~  140 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMAS--PERFVVGLDISESALAKANETYGS-SPKAEYFSFVKEDVFTWR-PTELFDLIFDYV  140 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCB--TTEEEEEECSCHHHHHHHHHHHTT-SGGGGGEEEECCCTTTCC-CSSCEEEEEEES
T ss_pred             CCCCCEEEeCCCCCHHHHHHHh--CCCeEEEEECCHHHHHHHHHHhhc-cCCCcceEEEECchhcCC-CCCCeeEEEECh
Confidence            3446999999999999999987  447999999999999999875421 001125889999999988 467999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       141 ~  141 (235)
T 3lcc_A          141 F  141 (235)
T ss_dssp             S
T ss_pred             h
Confidence            4

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=99.31  E-value=6.8e-12  Score=96.25  Aligned_cols=71  Identities=14%  Similarity=0.041  Sum_probs=60.7

Q ss_pred             eEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           94 TALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +|||+|||+|.++..+.+.  ..+|+++|+|++|++.+++...   ..+.++.++++|.+.+|+++++||+|+++.
T Consensus        32 ~vLdiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~~~~fD~v~~~~  102 (202)
T 2kw5_A           32 KILCLAEGEGRNACFLASL--GYEVTAVDQSSVGLAKAKQLAQ---EKGVKITTVQSNLADFDIVADAWEGIVSIF  102 (202)
T ss_dssp             EEEECCCSCTHHHHHHHTT--TCEEEEECSSHHHHHHHHHHHH---HHTCCEEEECCBTTTBSCCTTTCSEEEEEC
T ss_pred             CEEEECCCCCHhHHHHHhC--CCeEEEEECCHHHHHHHHHHHH---hcCCceEEEEcChhhcCCCcCCccEEEEEh
Confidence            9999999999999999875  3599999999999999987542   123468889999999999999999999863

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=99.31  E-value=1.2e-11  Score=95.60  Aligned_cols=70  Identities=10%  Similarity=-0.171  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..+.+.  ..+|+++|+|++|++.+++..        ++.++++|.+.+| ++++||+|+++.
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~--------~~~~~~~d~~~~~-~~~~fD~v~~~~  110 (211)
T 3e23_A           42 PAGAKILELGCGAGYQAEAMLAA--GFDVDATDGSPELAAEASRRL--------GRPVRTMLFHQLD-AIDAYDAVWAHA  110 (211)
T ss_dssp             CTTCEEEESSCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHH--------TSCCEECCGGGCC-CCSCEEEEEECS
T ss_pred             CCCCcEEEECCCCCHHHHHHHHc--CCeEEEECCCHHHHHHHHHhc--------CCceEEeeeccCC-CCCcEEEEEecC
Confidence            35689999999999999999885  369999999999999998642        3566889999999 789999999975


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       111 ~  111 (211)
T 3e23_A          111 C  111 (211)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=99.31  E-value=1.4e-11  Score=94.99  Aligned_cols=81  Identities=19%  Similarity=0.091  Sum_probs=64.6

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCC
Q 030823           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (171)
Q Consensus        80 ~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~  159 (171)
                      .+.+.+..+ .+..+|||+|||+|.++..+.+.  ..+|+++|+|+.|++.+++.      ...++.++++|.+.+ +++
T Consensus        36 ~~~~~l~~~-~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~------~~~~~~~~~~d~~~~-~~~  105 (218)
T 3ou2_A           36 AALERLRAG-NIRGDVLELASGTGYWTRHLSGL--ADRVTALDGSAEMIAEAGRH------GLDNVEFRQQDLFDW-TPD  105 (218)
T ss_dssp             HHHHHHTTT-TSCSEEEEESCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHGGG------CCTTEEEEECCTTSC-CCS
T ss_pred             HHHHHHhcC-CCCCeEEEECCCCCHHHHHHHhc--CCeEEEEeCCHHHHHHHHhc------CCCCeEEEecccccC-CCC
Confidence            344444432 34579999999999999999885  36999999999999999751      224688899999988 789


Q ss_pred             CccceEEEecc
Q 030823          160 RYACRFFVLAL  170 (171)
Q Consensus       160 ~sfDlV~s~~~  170 (171)
                      ++||+|+++.+
T Consensus       106 ~~~D~v~~~~~  116 (218)
T 3ou2_A          106 RQWDAVFFAHW  116 (218)
T ss_dssp             SCEEEEEEESC
T ss_pred             CceeEEEEech
Confidence            99999999753

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=99.31  E-value=4.7e-12  Score=99.97  Aligned_cols=85  Identities=16%  Similarity=0.135  Sum_probs=66.8

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL  155 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L  155 (171)
                      ++.+...+... .+..+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.+++...   ..++  ++.++++|.+.+
T Consensus        66 ~~~l~~~~~~~-~~~~~vLD~gcG~G~~~~~la~~~--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~~~d~~~~  139 (241)
T 3gdh_A           66 AEHIAGRVSQS-FKCDVVVDAFCGVGGNTIQFALTG--MRVIAIDIDPVKIALARNNAE---VYGIADKIEFICGDFLLL  139 (241)
T ss_dssp             HHHHHHHHHHH-SCCSEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---HTTCGGGEEEEESCHHHH
T ss_pred             HHHHHHHhhhc-cCCCEEEECccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHH---HcCCCcCeEEEECChHHh
Confidence            44444444332 256899999999999999999854  899999999999999987542   2343  688999999888


Q ss_pred             CCCCCccceEEEec
Q 030823          156 PLKERYACRFFVLA  169 (171)
Q Consensus       156 Pf~~~sfDlV~s~~  169 (171)
                      + ++++||+|+++.
T Consensus       140 ~-~~~~~D~v~~~~  152 (241)
T 3gdh_A          140 A-SFLKADVVFLSP  152 (241)
T ss_dssp             G-GGCCCSEEEECC
T ss_pred             c-ccCCCCEEEECC
Confidence            7 678999999874

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=99.31  E-value=9.8e-12  Score=100.30  Aligned_cols=76  Identities=13%  Similarity=-0.045  Sum_probs=62.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCC-CCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPL-KERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf-~~~sfDlV~  166 (171)
                      .+..+|||+|||+|.++..+.+.+ ..+|+|+|+|++|++.+++...   ..+  .++.++++|.+.+|+ ++++||+|+
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~fD~v~  138 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAG-IGEYYGVDIAEVSINDARVRAR---NMKRRFKVFFRAQDSYGRHMDLGKEFDVIS  138 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHT-CSEEEEEESCHHHHHHHHHHHH---TSCCSSEEEEEESCTTTSCCCCSSCEEEEE
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH---hcCCCccEEEEECCccccccCCCCCcCEEE
Confidence            466899999999999998887753 4599999999999999987542   122  257889999999998 689999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       139 ~~~  141 (298)
T 1ri5_A          139 SQF  141 (298)
T ss_dssp             EES
T ss_pred             ECc
Confidence            874

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=99.31  E-value=7.3e-12  Score=100.20  Aligned_cols=80  Identities=9%  Similarity=0.027  Sum_probs=63.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh---ccCC-CceeEEEccCCC-CC--CCCCcc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA---HNDN-IETCFVVGDEEF-LP--LKERYA  162 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~---~~~~-~~~~~~~~D~e~-LP--f~~~sf  162 (171)
                      .+..+|||||||+|.++..|++..+...|+|+|+|+.|++.|++.....   ...+ .++.++++|+.. +|  |++++|
T Consensus        45 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~~~~~nv~~~~~d~~~~l~~~~~~~~~  124 (235)
T 3ckk_A           45 QAQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPAGGFQNIACLRSNAMKHLPNFFYKGQL  124 (235)
T ss_dssp             -CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTTCCCTTEEEEECCTTTCHHHHCCTTCE
T ss_pred             CCCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHhcCCCeEEEEECcHHHhhhhhCCCcCe
Confidence            3457899999999999999998777789999999999999987643210   0122 368899999986 77  889999


Q ss_pred             ceEEEec
Q 030823          163 CRFFVLA  169 (171)
Q Consensus       163 DlV~s~~  169 (171)
                      |.|+++.
T Consensus       125 D~v~~~~  131 (235)
T 3ckk_A          125 TKMFFLF  131 (235)
T ss_dssp             EEEEEES
T ss_pred             eEEEEeC
Confidence            9998864

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=99.30  E-value=5.7e-12  Score=98.87  Aligned_cols=77  Identities=8%  Similarity=0.036  Sum_probs=64.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      .+..+|||||||+|.++..|++..+..+|+|+|+|++|+..|++...   ..+. ++.++++|+..++  +++++||.|+
T Consensus        37 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~---~~~~~nv~~~~~d~~~l~~~~~~~~~d~v~  113 (213)
T 2fca_A           37 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK---DSEAQNVKLLNIDADTLTDVFEPGEVKRVY  113 (213)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HSCCSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHH---HcCCCCEEEEeCCHHHHHhhcCcCCcCEEE
Confidence            35678999999999999999887667899999999999999987542   1233 6888999998887  8889999998


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       114 ~~~  116 (213)
T 2fca_A          114 LNF  116 (213)
T ss_dssp             EES
T ss_pred             EEC
Confidence            764

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=99.30  E-value=1.6e-11  Score=91.92  Aligned_cols=90  Identities=11%  Similarity=-0.006  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEcc
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGD  151 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D  151 (171)
                      .+++...+.+.+.  ..+..+|||+|||+|.++..+++..+..+|+++|+|++|++.+++...   ..+.  ++ ++.+|
T Consensus        10 ~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~-~~~~d   83 (178)
T 3hm2_A           10 KQHVRALAISALA--PKPHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAI---NLGVSDRI-AVQQG   83 (178)
T ss_dssp             HHHHHHHHHHHHC--CCTTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHH---TTTCTTSE-EEECC
T ss_pred             HHHHHHHHHHHhc--ccCCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHH---HhCCCCCE-EEecc
Confidence            4445555555543  245579999999999999999886667899999999999999987542   2232  46 77787


Q ss_pred             CC-CCCCCCCccceEEEec
Q 030823          152 EE-FLPLKERYACRFFVLA  169 (171)
Q Consensus       152 ~e-~LPf~~~sfDlV~s~~  169 (171)
                      .. .+|..+++||+|+++.
T Consensus        84 ~~~~~~~~~~~~D~i~~~~  102 (178)
T 3hm2_A           84 APRAFDDVPDNPDVIFIGG  102 (178)
T ss_dssp             TTGGGGGCCSCCSEEEECC
T ss_pred             hHhhhhccCCCCCEEEECC
Confidence            63 4444448999999875

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=99.30  E-value=1.2e-11  Score=97.01  Aligned_cols=74  Identities=16%  Similarity=0.071  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+.+.+ ..+|+++|+|++|++.+++..     ...++.++++|.+.+|+++++||+|+++.+
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~~-~~~v~~vD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~fD~v~~~~~  116 (243)
T 3bkw_A           43 GGLRIVDLGCGFGWFCRWAHEHG-ASYVLGLDLSEKMLARARAAG-----PDTGITYERADLDKLHLPQDSFDLAYSSLA  116 (243)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHTS-----CSSSEEEEECCGGGCCCCTTCEEEEEEESC
T ss_pred             CCCEEEEEcCcCCHHHHHHHHCC-CCeEEEEcCCHHHHHHHHHhc-----ccCCceEEEcChhhccCCCCCceEEEEecc
Confidence            56899999999999999998753 249999999999999998743     223578899999999999999999998753

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=99.30  E-value=1.2e-11  Score=99.69  Aligned_cols=77  Identities=16%  Similarity=0.061  Sum_probs=63.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC---CCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK---ERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~---~~sfDlV~  166 (171)
                      +..+|||||||+|.++..|+...+..+|+++|+|++|++.+++...   ..+. ++.++++|.+.++..   +++||+|+
T Consensus        80 ~~~~vLDiG~G~G~~~i~la~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~l~~v~~~~~d~~~~~~~~~~~~~fD~I~  156 (249)
T 3g89_A           80 GPLRVLDLGTGAGFPGLPLKIVRPELELVLVDATRKKVAFVERAIE---VLGLKGARALWGRAEVLAREAGHREAYARAV  156 (249)
T ss_dssp             SSCEEEEETCTTTTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH---HHTCSSEEEEECCHHHHTTSTTTTTCEEEEE
T ss_pred             CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HhCCCceEEEECcHHHhhcccccCCCceEEE
Confidence            4679999999999999999876667899999999999999987543   1233 588899999988764   48999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      |.++
T Consensus       157 s~a~  160 (249)
T 3g89_A          157 ARAV  160 (249)
T ss_dssp             EESS
T ss_pred             ECCc
Confidence            9875

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=99.30  E-value=6.3e-12  Score=106.89  Aligned_cols=93  Identities=11%  Similarity=-0.037  Sum_probs=76.1

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCF  147 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~  147 (171)
                      ..++...++..|....   ..+..+|||+|||+|.++..++..+...+|+|+|+|+.|++.|++...   ..++  ++.+
T Consensus       199 ~a~l~~~la~~l~~~~---~~~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~---~~gl~~~i~~  272 (373)
T 3tm4_A          199 PAHLKASIANAMIELA---ELDGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNAL---AAGVLDKIKF  272 (373)
T ss_dssp             TTCCCHHHHHHHHHHH---TCCSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHH---HTTCGGGCEE
T ss_pred             CCCccHHHHHHHHHhh---cCCCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHH---HcCCCCceEE
Confidence            4556777777777655   345689999999999999999886554599999999999999987543   2444  6889


Q ss_pred             EEccCCCCCCCCCccceEEEe
Q 030823          148 VVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +++|...+|+++++||+|+++
T Consensus       273 ~~~D~~~~~~~~~~fD~Ii~n  293 (373)
T 3tm4_A          273 IQGDATQLSQYVDSVDFAISN  293 (373)
T ss_dssp             EECCGGGGGGTCSCEEEEEEE
T ss_pred             EECChhhCCcccCCcCEEEEC
Confidence            999999999988999999996

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=99.30  E-value=5.9e-12  Score=103.19  Aligned_cols=80  Identities=13%  Similarity=0.134  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccC-----------------------------
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND-----------------------------  141 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~-----------------------------  141 (171)
                      +..+|||||||+|.++..|+...+..+|+|+|+|+.|++.|++........                             
T Consensus        46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  125 (292)
T 3g07_A           46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC  125 (292)
T ss_dssp             TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred             CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence            468999999999999999998766679999999999999998753210000                             


Q ss_pred             ---------------------------CCceeEEEccCCCCC-----CCCCccceEEEecc
Q 030823          142 ---------------------------NIETCFVVGDEEFLP-----LKERYACRFFVLAL  170 (171)
Q Consensus       142 ---------------------------~~~~~~~~~D~e~LP-----f~~~sfDlV~s~~~  170 (171)
                                                 ..++.|+++|....+     +.+++||+|++..+
T Consensus       126 ~p~~~~~~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~v  186 (292)
T 3g07_A          126 FPASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSL  186 (292)
T ss_dssp             ----------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESC
T ss_pred             ccchhhhccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChH
Confidence                                       025888999987654     67899999999874

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=99.29  E-value=1.1e-11  Score=94.71  Aligned_cols=76  Identities=9%  Similarity=-0.066  Sum_probs=60.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCC--CCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      .+..+|||+|||+|.++..+... +..+|+++|+|++|++.+++....   .+ .++.++++|...++  +++++||+|+
T Consensus        43 ~~~~~vLDlgcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~v~~~~~d~~~~~~~~~~~~fD~i~  118 (189)
T 3p9n_A           43 LTGLAVLDLYAGSGALGLEALSR-GAASVLFVESDQRSAAVIARNIEA---LGLSGATLRRGAVAAVVAAGTTSPVDLVL  118 (189)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT-TCSEEEEEECCHHHHHHHHHHHHH---HTCSCEEEEESCHHHHHHHCCSSCCSEEE
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHC-CCCeEEEEECCHHHHHHHHHHHHH---cCCCceEEEEccHHHHHhhccCCCccEEE
Confidence            35689999999999999977764 446899999999999999875431   22 36888999988764  5579999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       119 ~~~  121 (189)
T 3p9n_A          119 ADP  121 (189)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            863

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=99.29  E-value=3.6e-11  Score=92.74  Aligned_cols=91  Identities=11%  Similarity=-0.026  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccC
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDE  152 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~  152 (171)
                      .+++...+.+++.  ..+..+|||+|||+|.++..+++.++..+|+++|+|++|++.+++....   .+ .++.++.+|.
T Consensus        25 ~~~i~~~~l~~l~--~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~---~~~~~v~~~~~d~   99 (204)
T 3e05_A           25 KQEVRAVTLSKLR--LQDDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKK---FVARNVTLVEAFA   99 (204)
T ss_dssp             CHHHHHHHHHHTT--CCTTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHH---HTCTTEEEEECCT
T ss_pred             hHHHHHHHHHHcC--CCCCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH---hCCCcEEEEeCCh
Confidence            3444444555443  2456899999999999999999877678999999999999999875421   22 3578899998


Q ss_pred             CCCCCCCCccceEEEec
Q 030823          153 EFLPLKERYACRFFVLA  169 (171)
Q Consensus       153 e~LPf~~~sfDlV~s~~  169 (171)
                      .......++||+|+++.
T Consensus       100 ~~~~~~~~~~D~i~~~~  116 (204)
T 3e05_A          100 PEGLDDLPDPDRVFIGG  116 (204)
T ss_dssp             TTTCTTSCCCSEEEESC
T ss_pred             hhhhhcCCCCCEEEECC
Confidence            65544457899999875

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=99.29  E-value=1.1e-11  Score=99.31  Aligned_cols=78  Identities=10%  Similarity=0.041  Sum_probs=63.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHH------HHHHHHHhhhhhccCC--CceeEEEcc---CCCCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYD------MLKLCKDAQQDAHNDN--IETCFVVGD---EEFLPL  157 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~------mL~~a~~~~~~~~~~~--~~~~~~~~D---~e~LPf  157 (171)
                      .+..+|||||||+|.++..+++.. +..+|+|+|+|++      |++.+++...   ..+  .++.++++|   .+.+|+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~  118 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLL---AGPLGDRLTVHFNTNLSDDLGPI  118 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHH---TSTTGGGEEEECSCCTTTCCGGG
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHH---hcCCCCceEEEECChhhhccCCC
Confidence            456899999999999999998763 5579999999997      9999987542   222  257888998   677888


Q ss_pred             CCCccceEEEecc
Q 030823          158 KERYACRFFVLAL  170 (171)
Q Consensus       158 ~~~sfDlV~s~~~  170 (171)
                      ++++||+|+++.+
T Consensus       119 ~~~~fD~v~~~~~  131 (275)
T 3bkx_A          119 ADQHFDRVVLAHS  131 (275)
T ss_dssp             TTCCCSEEEEESC
T ss_pred             CCCCEEEEEEccc
Confidence            9999999998753

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=99.29  E-value=1.3e-11  Score=104.85  Aligned_cols=81  Identities=16%  Similarity=0.010  Sum_probs=64.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhc------cCCCceeEEEccCCCC------C
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAH------NDNIETCFVVGDEEFL------P  156 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~------~~~~~~~~~~~D~e~L------P  156 (171)
                      .+..+|||||||+|.++..|++.. +..+|+|+|+|++|++.+++......      ....++.++++|.+.+      |
T Consensus        82 ~~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~g~~~~~~v~~~~~d~~~l~~~~~~~  161 (383)
T 4fsd_A           82 LEGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEKFFGSPSRSNVRFLKGFIENLATAEPEG  161 (383)
T ss_dssp             GTTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHHHHSSTTCCCEEEEESCTTCGGGCBSCC
T ss_pred             CCCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhhcccccCCCceEEEEccHHHhhhcccCC
Confidence            356899999999999999997653 45799999999999999987432100      1114688999999988      9


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                      +++++||+|+++.+
T Consensus       162 ~~~~~fD~V~~~~~  175 (383)
T 4fsd_A          162 VPDSSVDIVISNCV  175 (383)
T ss_dssp             CCTTCEEEEEEESC
T ss_pred             CCCCCEEEEEEccc
Confidence            99999999999864

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=99.29  E-value=4.2e-12  Score=100.36  Aligned_cols=69  Identities=22%  Similarity=0.284  Sum_probs=58.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--CCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L--Pf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+.+.+  .+|+|+|+|++|++.+++       .   +.++++|.+.+  |+++++||+|++
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~~~~a~~-------~---~~~~~~d~~~~~~~~~~~~fD~i~~  107 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEG--IESIGVDINEDMIKFCEG-------K---FNVVKSDAIEYLKSLPDKYLDGVMI  107 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHT--CCEEEECSCHHHHHHHHT-------T---SEEECSCHHHHHHTSCTTCBSEEEE
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCC--CcEEEEECCHHHHHHHHh-------h---cceeeccHHHHhhhcCCCCeeEEEE
Confidence            355899999999999999998753  589999999999999975       1   56788888775  899999999999


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       108 ~~~  110 (240)
T 3dli_A          108 SHF  110 (240)
T ss_dssp             ESC
T ss_pred             CCc
Confidence            754

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=99.28  E-value=1.5e-11  Score=92.04  Aligned_cols=87  Identities=10%  Similarity=0.057  Sum_probs=66.9

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEE  153 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e  153 (171)
                      +.+.+.+.+.+.  ..+..+|||+|||+|.++..+.+  +..+++++|+|++|++.+++...   ..+ .++.++++|..
T Consensus        21 ~~~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~--~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~~~~~d~~   93 (183)
T 2yxd_A           21 EEIRAVSIGKLN--LNKDDVVVDVGCGSGGMTVEIAK--RCKFVYAIDYLDGAIEVTKQNLA---KFNIKNCQIIKGRAE   93 (183)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCCCSHHHHHHHT--TSSEEEEEECSHHHHHHHHHHHH---HTTCCSEEEEESCHH
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEeCCCCCHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHH---HcCCCcEEEEECCcc
Confidence            344444544442  23557999999999999999988  56899999999999999987542   123 25788999987


Q ss_pred             CCCCCCCccceEEEec
Q 030823          154 FLPLKERYACRFFVLA  169 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~  169 (171)
                      . ++++++||+|+++.
T Consensus        94 ~-~~~~~~~D~i~~~~  108 (183)
T 2yxd_A           94 D-VLDKLEFNKAFIGG  108 (183)
T ss_dssp             H-HGGGCCCSEEEECS
T ss_pred             c-cccCCCCcEEEECC
Confidence            7 77788999999875

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=99.28  E-value=1.9e-11  Score=98.91  Aligned_cols=74  Identities=11%  Similarity=0.053  Sum_probs=63.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||+|||+|.++..|++.+  .+|+|+|+|+.|++.+++...   ..+.++.++++|.+.+++ +++||+|+++.+
T Consensus       120 ~~~~vLD~GcG~G~~~~~l~~~g--~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~-~~~fD~i~~~~~  193 (286)
T 3m70_A          120 SPCKVLDLGCGQGRNSLYLSLLG--YDVTSWDHNENSIAFLNETKE---KENLNISTALYDINAANI-QENYDFIVSTVV  193 (286)
T ss_dssp             CSCEEEEESCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCGGGCCC-CSCEEEEEECSS
T ss_pred             CCCcEEEECCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHHHH---HcCCceEEEEeccccccc-cCCccEEEEccc
Confidence            56899999999999999999853  599999999999999987543   234478899999999988 899999999753

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=99.28  E-value=7.5e-12  Score=103.97  Aligned_cols=94  Identities=7%  Similarity=-0.011  Sum_probs=72.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      ++++-.....+++.+++.+.  ..+..+|||||||+|.++..|++.  ..+|+++|++++|++.+++...    ...++.
T Consensus        28 ~GQnfL~d~~i~~~Iv~~l~--~~~~~~VLEIG~G~G~lT~~La~~--~~~V~aVEid~~li~~a~~~~~----~~~~v~   99 (295)
T 3gru_A           28 LGQCFLIDKNFVNKAVESAN--LTKDDVVLEIGLGKGILTEELAKN--AKKVYVIEIDKSLEPYANKLKE----LYNNIE   99 (295)
T ss_dssp             --CCEECCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCGGGHHHHHHHHH----HCSSEE
T ss_pred             cCccccCCHHHHHHHHHhcC--CCCcCEEEEECCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHhc----cCCCeE
Confidence            46644444556666666543  235679999999999999999985  4799999999999999987542    223688


Q ss_pred             EEEccCCCCCCCCCccceEEEe
Q 030823          147 FVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++++|...+++++.+||.|++|
T Consensus       100 vi~gD~l~~~~~~~~fD~Iv~N  121 (295)
T 3gru_A          100 IIWGDALKVDLNKLDFNKVVAN  121 (295)
T ss_dssp             EEESCTTTSCGGGSCCSEEEEE
T ss_pred             EEECchhhCCcccCCccEEEEe
Confidence            8999999999988899999987

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=99.28  E-value=2e-11  Score=99.69  Aligned_cols=73  Identities=11%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC----CceeEEEccCCCCCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEEFLPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~----~~~~~~~~D~e~LPf~~~sfDlV  165 (171)
                      .+..+|||||||+|.++..|.+.  ..+|+|+|+|+.|++.+++...   ..+    .++.++++|.+.+|+ +++||+|
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~~~v~~~~~d~~~~~~-~~~fD~v  154 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDL--GWEVTALELSTSVLAAFRKRLA---EAPADVRDRCTLVQGDMSAFAL-DKRFGTV  154 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTT--TCCEEEEESCHHHHHHHHHHHH---TSCHHHHTTEEEEECBTTBCCC-SCCEEEE
T ss_pred             CCCCcEEEEeccCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHh---hcccccccceEEEeCchhcCCc-CCCcCEE
Confidence            34469999999999999999885  3689999999999999987542   222    358899999999998 7999999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +++
T Consensus       155 ~~~  157 (299)
T 3g2m_A          155 VIS  157 (299)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            864

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=99.28  E-value=1.9e-11  Score=95.82  Aligned_cols=72  Identities=19%  Similarity=0.154  Sum_probs=60.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..+.+.   .+|+++|+|++|++.+++...   ..+.++.++++|...+|++ ++||+|+++
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~---~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~~~-~~fD~v~~~  103 (243)
T 3d2l_A           32 EPGKRIADIGCGTGTATLLLADH---YEVTGVDLSEEMLEIAQEKAM---ETNRHVDFWVQDMRELELP-EPVDAITIL  103 (243)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT---SEEEEEESCHHHHHHHHHHHH---HTTCCCEEEECCGGGCCCS-SCEEEEEEC
T ss_pred             CCCCeEEEecCCCCHHHHHHhhC---CeEEEEECCHHHHHHHHHhhh---hcCCceEEEEcChhhcCCC-CCcCEEEEe
Confidence            34589999999999999999874   799999999999999987542   1334678899999999876 899999986

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=99.28  E-value=5.7e-12  Score=99.68  Aligned_cols=77  Identities=8%  Similarity=0.097  Sum_probs=64.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC-C--CCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL-P--LKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L-P--f~~~sfDlV  165 (171)
                      .+.++|||||||+|.++..+++..+...|+|+|+|++|+..+++...   ..+. ++.++++|++.+ |  +++++||.|
T Consensus        33 ~~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~---~~~l~nv~~~~~Da~~~l~~~~~~~~~d~v  109 (218)
T 3dxy_A           33 REAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAH---EEGLSNLRVMCHDAVEVLHKMIPDNSLRMV  109 (218)
T ss_dssp             SCCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HTTCSSEEEECSCHHHHHHHHSCTTCEEEE
T ss_pred             CCCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHH---HhCCCcEEEEECCHHHHHHHHcCCCChheE
Confidence            35689999999999999999987777899999999999999987542   2333 688899998874 4  789999999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +++.
T Consensus       110 ~~~~  113 (218)
T 3dxy_A          110 QLFF  113 (218)
T ss_dssp             EEES
T ss_pred             EEeC
Confidence            9873

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=99.27  E-value=3.6e-11  Score=111.66  Aligned_cols=97  Identities=12%  Similarity=0.018  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhh---ccCC-Ccee
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDA---HNDN-IETC  146 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~---~~~~-~~~~  146 (171)
                      ++.....+.+.+.+..  .+..+|||||||+|.++..|++.+ +..+|+|+|+|++|++.|+++....   ...+ .++.
T Consensus       704 PL~eqRle~LLelL~~--~~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAkr~gl~nVe  781 (950)
T 3htx_A          704 PLSKQRVEYALKHIRE--SSASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKEACNVKSAT  781 (950)
T ss_dssp             CHHHHHHHHHHHHHHH--SCCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTTCSSCSEEE
T ss_pred             hHHHHHHHHHHHHhcc--cCCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchhhcCCCceE
Confidence            3333334444444432  356899999999999999999865 4579999999999999998743210   0112 3688


Q ss_pred             EEEccCCCCCCCCCccceEEEecc
Q 030823          147 FVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       147 ~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ++++|.+.+|+++++||+|+++.+
T Consensus       782 fiqGDa~dLp~~d~sFDlVV~~eV  805 (950)
T 3htx_A          782 LYDGSILEFDSRLHDVDIGTCLEV  805 (950)
T ss_dssp             EEESCTTSCCTTSCSCCEEEEESC
T ss_pred             EEECchHhCCcccCCeeEEEEeCc
Confidence            999999999999999999999764

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=99.27  E-value=1.2e-11  Score=96.24  Aligned_cols=77  Identities=10%  Similarity=0.077  Sum_probs=59.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHH-HhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCK-DAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~-~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..|++.++..+|+|+|+|++|++.+. .........+. ++.++++|.+.+|+++++ |.|+.
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~~~~~~~v~~~~~d~~~l~~~~~~-d~v~~  104 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPAKGGLPNLLYLWATAERLPPLSGV-GELHV  104 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGGGTCCTTEEEEECCSTTCCSCCCE-EEEEE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhhhcCCCceEEEecchhhCCCCCCC-CEEEE
Confidence            4567899999999999999998776789999999999999632 21111112232 688999999999998887 87763

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=99.27  E-value=3.7e-11  Score=95.10  Aligned_cols=73  Identities=16%  Similarity=0.170  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..|.+.  ..+|+|+|+|++|++.+++...   ..+.++.++++|...+|++ ++||+|++.
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~--~~~v~gvD~s~~~l~~a~~~~~---~~~~~v~~~~~d~~~~~~~-~~fD~v~~~  112 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAER--GYEVVGLDLHEEMLRVARRKAK---ERNLKIEFLQGDVLEIAFK-NEFDAVTMF  112 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HTTCCCEEEESCGGGCCCC-SCEEEEEEC
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHH---hcCCceEEEECChhhcccC-CCccEEEEc
Confidence            45679999999999999999885  3699999999999999987542   2344688899999999875 789999974

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=99.27  E-value=1.7e-11  Score=100.65  Aligned_cols=76  Identities=8%  Similarity=-0.116  Sum_probs=63.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHh-hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~-~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .+..+|||||||+|.++..++ ...+..+|+++|+|+.|++.+++...   ..+.  ++.++++|...+|++ ++||+|+
T Consensus       117 ~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~-~~fD~v~  192 (305)
T 3ocj_A          117 RPGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAA---GHALAGQITLHRQDAWKLDTR-EGYDLLT  192 (305)
T ss_dssp             CTTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHT---TSTTGGGEEEEECCGGGCCCC-SCEEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECchhcCCcc-CCeEEEE
Confidence            566899999999999999985 33456799999999999999987542   2333  388999999999987 9999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       193 ~~~  195 (305)
T 3ocj_A          193 SNG  195 (305)
T ss_dssp             CCS
T ss_pred             ECC
Confidence            875

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=99.27  E-value=1.6e-11  Score=93.40  Aligned_cols=74  Identities=14%  Similarity=-0.013  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..+.+.  ..+|+++|+|+.|++.+++...   ..+. ++.++++|.+.+|+ +++||+|+++.
T Consensus        32 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~~~~~~d~~~~~~-~~~~D~v~~~~  105 (199)
T 2xvm_A           32 KPGKTLDLGCGNGRNSLYLAAN--GYDVDAWDKNAMSIANVERIKS---IENLDNLHTRVVDLNNLTF-DRQYDFILSTV  105 (199)
T ss_dssp             CSCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HHTCTTEEEEECCGGGCCC-CCCEEEEEEES
T ss_pred             CCCeEEEEcCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHH---hCCCCCcEEEEcchhhCCC-CCCceEEEEcc
Confidence            4579999999999999999885  3699999999999999987542   1222 58889999999998 89999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       106 ~  106 (199)
T 2xvm_A          106 V  106 (199)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=99.26  E-value=3.2e-11  Score=90.84  Aligned_cols=70  Identities=16%  Similarity=0.056  Sum_probs=60.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..+.+.  ..+++++|+|++|++.+++..       .++.++++|...+|+++++||+|+++
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~~D~~~~~~~~a~~~~-------~~~~~~~~d~~~~~~~~~~~D~i~~~  114 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQ--GHDVLGTDLDPILIDYAKQDF-------PEARWVVGDLSVDQISETDFDLIVSA  114 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHC-------TTSEEEECCTTTSCCCCCCEEEEEEC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHC--CCcEEEEcCCHHHHHHHHHhC-------CCCcEEEcccccCCCCCCceeEEEEC
Confidence            46689999999999999999885  369999999999999998642       23678999999999989999999986

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=99.26  E-value=1.6e-11  Score=93.91  Aligned_cols=77  Identities=6%  Similarity=-0.066  Sum_probs=62.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC-CCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP-LKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP-f~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..+++.. +.++|+++|+|++|++.+++...   ..+.  ++.++++|.+.++ +.+++||+|
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~fD~v   97 (197)
T 3eey_A           21 KEGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLT---DLNLIDRVTLIKDGHQNMDKYIDCPVKAV   97 (197)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHH---HTTCGGGEEEECSCGGGGGGTCCSCEEEE
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCCeEEEECCHHHHhhhccCCceEE
Confidence            456899999999999999998753 44699999999999999987542   2232  6888999998886 677999999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +++.
T Consensus        98 ~~~~  101 (197)
T 3eey_A           98 MFNL  101 (197)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            9864

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=99.26  E-value=8.5e-11  Score=90.54  Aligned_cols=79  Identities=9%  Similarity=-0.024  Sum_probs=61.4

Q ss_pred             HHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccc
Q 030823           85 LEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYAC  163 (171)
Q Consensus        85 L~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfD  163 (171)
                      +.....+..+|||+|||+|.++..+.+. +..+|+++|+|++|++.+++...   ..+. ++.++.+|....  .+++||
T Consensus        54 l~~~~~~~~~vLDiG~G~G~~~~~l~~~-~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~v~~~~~d~~~~--~~~~fD  127 (205)
T 3grz_A           54 IERAMVKPLTVADVGTGSGILAIAAHKL-GAKSVLATDISDESMTAAEENAA---LNGIYDIALQKTSLLAD--VDGKFD  127 (205)
T ss_dssp             HHHHCSSCCEEEEETCTTSHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH---HTTCCCCEEEESSTTTT--CCSCEE
T ss_pred             HHHhccCCCEEEEECCCCCHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH---HcCCCceEEEecccccc--CCCCce
Confidence            3333356689999999999999999874 44699999999999999987542   1233 377888998654  468999


Q ss_pred             eEEEec
Q 030823          164 RFFVLA  169 (171)
Q Consensus       164 lV~s~~  169 (171)
                      +|+++.
T Consensus       128 ~i~~~~  133 (205)
T 3grz_A          128 LIVANI  133 (205)
T ss_dssp             EEEEES
T ss_pred             EEEECC
Confidence            999975

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=99.26  E-value=4e-11  Score=92.18  Aligned_cols=68  Identities=13%  Similarity=0.031  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..+.+. +..+|+|+|+|++|++.+++..     .  ++.++++|.+.+|   ++||+|+++.
T Consensus        51 ~~~~vlD~gcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~-----~--~~~~~~~d~~~~~---~~~D~v~~~~  118 (200)
T 1ne2_A           51 GGRSVIDAGTGNGILACGSYLL-GAESVTAFDIDPDAIETAKRNC-----G--GVNFMVADVSEIS---GKYDTWIMNP  118 (200)
T ss_dssp             BTSEEEEETCTTCHHHHHHHHT-TBSEEEEEESCHHHHHHHHHHC-----T--TSEEEECCGGGCC---CCEEEEEECC
T ss_pred             CCCEEEEEeCCccHHHHHHHHc-CCCEEEEEECCHHHHHHHHHhc-----C--CCEEEECcHHHCC---CCeeEEEECC
Confidence            5679999999999999999875 3458999999999999998742     2  5788999998876   7999999974

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=99.26  E-value=3.8e-11  Score=92.70  Aligned_cols=86  Identities=12%  Similarity=0.020  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL  155 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L  155 (171)
                      +...+.+.+.  ..+..+|||+|||+|.++..+++.  ..+|+++|+|++|++.+++...   ..+. ++.++.+|....
T Consensus        65 ~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~--~~~v~~vD~~~~~~~~a~~~~~---~~~~~~v~~~~~d~~~~  137 (210)
T 3lbf_A           65 MVARMTELLE--LTPQSRVLEIGTGSGYQTAILAHL--VQHVCSVERIKGLQWQARRRLK---NLDLHNVSTRHGDGWQG  137 (210)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEESCGGGC
T ss_pred             HHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHH---HcCCCceEEEECCcccC
Confidence            3344444432  245689999999999999999885  4799999999999999987542   1222 588899999888


Q ss_pred             CCCCCccceEEEec
Q 030823          156 PLKERYACRFFVLA  169 (171)
Q Consensus       156 Pf~~~sfDlV~s~~  169 (171)
                      +.++++||+|+++.
T Consensus       138 ~~~~~~~D~i~~~~  151 (210)
T 3lbf_A          138 WQARAPFDAIIVTA  151 (210)
T ss_dssp             CGGGCCEEEEEESS
T ss_pred             CccCCCccEEEEcc
Confidence            77789999999975

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=99.25  E-value=8.5e-12  Score=103.43  Aligned_cols=78  Identities=8%  Similarity=-0.130  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccC----CCceeEEEccC------CCC--CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND----NIETCFVVGDE------EFL--PLK  158 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~----~~~~~~~~~D~------e~L--Pf~  158 (171)
                      +..+|||||||+|..+..+... ...+|+|+|+|++||+.|+++.......    ...+.|.+.|.      +.+  +++
T Consensus        48 ~~~~VLDlGCG~G~~l~~~~~~-~~~~v~GiD~S~~~l~~A~~~~~~~~~~~~~~~~~~~f~~~d~~~d~~~~~l~~~~~  126 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADLEKYFYG-EIALLVATDPDADAIARGNERYNKLNSGIKTKYYKFDYIQETIRSDTFVSSVREVFY  126 (302)
T ss_dssp             SCCEEEETTCTTTTTHHHHHHT-TCSEEEEEESCHHHHHHHHHHHHHHCC----CCCEEEEEECCTTSSSHHHHHHTTCC
T ss_pred             CCCeEEEEecCCcHhHHHHHhc-CCCeEEEEECCHHHHHHHHHHHHhccccccccccccchhhhhcccchhhhhhhcccc
Confidence            4579999999999765555442 3479999999999999998764311100    01256777776      434  467


Q ss_pred             CCccceEEEec
Q 030823          159 ERYACRFFVLA  169 (171)
Q Consensus       159 ~~sfDlV~s~~  169 (171)
                      +++||+|+|..
T Consensus       127 ~~~FD~V~~~~  137 (302)
T 2vdw_A          127 FGKFNIIDWQF  137 (302)
T ss_dssp             SSCEEEEEEES
T ss_pred             CCCeeEEEECc
Confidence            88999999863

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=99.25  E-value=5.4e-11  Score=92.77  Aligned_cols=75  Identities=11%  Similarity=-0.004  Sum_probs=60.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+++.  ..+|+++|+|++|++.+++...   ..+.  ++.++.+|.+......+.||+|++
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~~~~---~~g~~~~v~~~~~d~~~~~~~~~~~D~v~~  128 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLA--GGRAITIEPRADRIENIQKNID---TYGLSPRMRAVQGTAPAALADLPLPEAVFI  128 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEESCTTGGGTTSCCCSEEEE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHc--CCEEEEEeCCHHHHHHHHHHHH---HcCCCCCEEEEeCchhhhcccCCCCCEEEE
Confidence            45689999999999999999885  5799999999999999987542   2232  488899999884334468999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       129 ~~  130 (204)
T 3njr_A          129 GG  130 (204)
T ss_dssp             CS
T ss_pred             CC
Confidence            64

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=99.25  E-value=2.3e-11  Score=96.97  Aligned_cols=75  Identities=15%  Similarity=0.066  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC---CCC---CCcc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL---PLK---ERYA  162 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L---Pf~---~~sf  162 (171)
                      +..+|||+|||+|.++..++...+..+|+|+|+|++|++.|++...   ..+.  ++.++++|.+..   +++   +++|
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~f  141 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE---QNNLSDLIKVVKVPQKTLLMDALKEESEIIY  141 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH---HcCCCccEEEEEcchhhhhhhhhhcccCCcc
Confidence            4579999999999999888765445799999999999999987542   2333  378899997752   555   3789


Q ss_pred             ceEEEe
Q 030823          163 CRFFVL  168 (171)
Q Consensus       163 DlV~s~  168 (171)
                      |+|+++
T Consensus       142 D~i~~n  147 (254)
T 2h00_A          142 DFCMCN  147 (254)
T ss_dssp             SEEEEC
T ss_pred             cEEEEC
Confidence            999997

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.25  E-value=2.9e-11  Score=98.32  Aligned_cols=93  Identities=9%  Similarity=0.066  Sum_probs=69.2

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      ++++-.....+++.+++.+.  ..+..+|||||||+|.++..|++.+  .+|+++|++++|++.+++...    ...++.
T Consensus         7 ~GQnFL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~--~~V~avEid~~~~~~~~~~~~----~~~~v~   78 (255)
T 3tqs_A            7 FGQHFLHDSFVLQKIVSAIH--PQKTDTLVEIGPGRGALTDYLLTEC--DNLALVEIDRDLVAFLQKKYN----QQKNIT   78 (255)
T ss_dssp             --CCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTTTTHHHHTTTS--SEEEEEECCHHHHHHHHHHHT----TCTTEE
T ss_pred             CCcccccCHHHHHHHHHhcC--CCCcCEEEEEcccccHHHHHHHHhC--CEEEEEECCHHHHHHHHHHHh----hCCCcE
Confidence            45544444556666766553  2356799999999999999999854  799999999999999987542    234688


Q ss_pred             EEEccCCCCCCCC----CccceEEEe
Q 030823          147 FVVGDEEFLPLKE----RYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e~LPf~~----~sfDlV~s~  168 (171)
                      ++.+|+..+++++    +.|| |++|
T Consensus        79 ~i~~D~~~~~~~~~~~~~~~~-vv~N  103 (255)
T 3tqs_A           79 IYQNDALQFDFSSVKTDKPLR-VVGN  103 (255)
T ss_dssp             EEESCTTTCCGGGSCCSSCEE-EEEE
T ss_pred             EEEcchHhCCHHHhccCCCeE-EEec
Confidence            8999999998754    5788 5554

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=99.25  E-value=2.1e-12  Score=99.04  Aligned_cols=89  Identities=12%  Similarity=0.015  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~  154 (171)
                      +.+.+.+.+.+.. ..+..+|||+|||+|.++..+++..+..+++++|+|++|++.+++...   ..+.++.++++|...
T Consensus        15 ~~~~~~~~~~l~~-~~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~   90 (215)
T 4dzr_A           15 EVLVEEAIRFLKR-MPSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAE---RFGAVVDWAAADGIE   90 (215)
T ss_dssp             HHHHHHHHHHHTT-CCTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC----------------------CCHHHHHH
T ss_pred             HHHHHHHHHHhhh-cCCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH---HhCCceEEEEcchHh
Confidence            3444445444432 145689999999999999999987666799999999999999976432   122256778888877


Q ss_pred             CCCCC-----CccceEEEe
Q 030823          155 LPLKE-----RYACRFFVL  168 (171)
Q Consensus       155 LPf~~-----~sfDlV~s~  168 (171)
                       ++++     ++||+|+++
T Consensus        91 -~~~~~~~~~~~fD~i~~n  108 (215)
T 4dzr_A           91 -WLIERAERGRPWHAIVSN  108 (215)
T ss_dssp             -HHHHHHHTTCCBSEEEEC
T ss_pred             -hhhhhhhccCcccEEEEC
Confidence             7766     999999985

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=99.24  E-value=6.5e-11  Score=91.36  Aligned_cols=82  Identities=12%  Similarity=-0.025  Sum_probs=61.4

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-  155 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-  155 (171)
                      ....+.+.+..  .+..+|||+|||+|.++..+.+.  ..+|+|+|+|+.|++.+++.        ..+.++++|.+.+ 
T Consensus        40 ~~~~~~~~~~~--~~~~~vLdiG~G~G~~~~~l~~~--~~~v~~vD~s~~~~~~a~~~--------~~~~~~~~~~~~~~  107 (227)
T 3e8s_A           40 TDQAILLAILG--RQPERVLDLGCGEGWLLRALADR--GIEAVGVDGDRTLVDAARAA--------GAGEVHLASYAQLA  107 (227)
T ss_dssp             HHHHHHHHHHH--TCCSEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHT--------CSSCEEECCHHHHH
T ss_pred             ccHHHHHHhhc--CCCCEEEEeCCCCCHHHHHHHHC--CCEEEEEcCCHHHHHHHHHh--------cccccchhhHHhhc
Confidence            33444444443  34589999999999999999885  36999999999999999862        3355677777666 


Q ss_pred             --CCCCC-ccceEEEecc
Q 030823          156 --PLKER-YACRFFVLAL  170 (171)
Q Consensus       156 --Pf~~~-sfDlV~s~~~  170 (171)
                        |+.++ +||+|+++.+
T Consensus       108 ~~~~~~~~~fD~v~~~~~  125 (227)
T 3e8s_A          108 EAKVPVGKDYDLICANFA  125 (227)
T ss_dssp             TTCSCCCCCEEEEEEESC
T ss_pred             ccccccCCCccEEEECch
Confidence              65555 4999999753

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=99.24  E-value=1.6e-11  Score=100.38  Aligned_cols=71  Identities=15%  Similarity=-0.058  Sum_probs=53.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-----CCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-----KERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-----~~~sfDl  164 (171)
                      .+..+|||||||+|.++..|++.  ..+|+++|+|++|++.+++...   ..     ++.++.+.++.     .+++||+
T Consensus        44 ~~g~~VLDlGcGtG~~a~~La~~--g~~V~gvD~S~~ml~~Ar~~~~---~~-----~v~~~~~~~~~~~~~~~~~~fD~  113 (261)
T 3iv6_A           44 VPGSTVAVIGASTRFLIEKALER--GASVTVFDFSQRMCDDLAEALA---DR-----CVTIDLLDITAEIPKELAGHFDF  113 (261)
T ss_dssp             CTTCEEEEECTTCHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHTS---SS-----CCEEEECCTTSCCCGGGTTCCSE
T ss_pred             CCcCEEEEEeCcchHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHH---hc-----cceeeeeecccccccccCCCccE
Confidence            45679999999999999999985  3799999999999999987532   11     23344444433     2679999


Q ss_pred             EEEecc
Q 030823          165 FFVLAL  170 (171)
Q Consensus       165 V~s~~~  170 (171)
                      |+++.+
T Consensus       114 Vv~~~~  119 (261)
T 3iv6_A          114 VLNDRL  119 (261)
T ss_dssp             EEEESC
T ss_pred             EEEhhh
Confidence            999863

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=99.24  E-value=1.2e-11  Score=96.06  Aligned_cols=75  Identities=8%  Similarity=-0.092  Sum_probs=58.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC---CceeEEEccCCCCCC--CCCc-cce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN---IETCFVVGDEEFLPL--KERY-ACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~---~~~~~~~~D~e~LPf--~~~s-fDl  164 (171)
                      +..+|||+|||+|.++..+...+ ..+|+++|+|++|++.+++...   ..+   .++.++++|...++.  ++++ ||+
T Consensus        53 ~~~~vLDlGcGtG~~~~~~~~~~-~~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~v~~~~~d~~~~~~~~~~~~~fD~  128 (201)
T 2ift_A           53 HQSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQ---TLKCSSEQAEVINQSSLDFLKQPQNQPHFDV  128 (201)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHH---HTTCCTTTEEEECSCHHHHTTSCCSSCCEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHcc-CCEEEEEECCHHHHHHHHHHHH---HhCCCccceEEEECCHHHHHHhhccCCCCCE
Confidence            45799999999999999866543 3699999999999999987542   223   257889999776532  4688 999


Q ss_pred             EEEec
Q 030823          165 FFVLA  169 (171)
Q Consensus       165 V~s~~  169 (171)
                      |+++.
T Consensus       129 I~~~~  133 (201)
T 2ift_A          129 VFLDP  133 (201)
T ss_dssp             EEECC
T ss_pred             EEECC
Confidence            99864

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=99.23  E-value=1.4e-11  Score=95.69  Aligned_cols=75  Identities=11%  Similarity=-0.090  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC-CCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF-LPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~-LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+...+ ..+|+++|+|++|++.+++...   ..+. ++.++++|.+. +|..+++||+|+++
T Consensus        54 ~~~~vLDlgcG~G~~~~~l~~~~-~~~V~~vD~s~~~l~~a~~~~~---~~~~~~v~~~~~D~~~~~~~~~~~fD~V~~~  129 (202)
T 2fpo_A           54 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLA---TLKAGNARVVNSNAMSFLAQKGTPHNIVFVD  129 (202)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHH---HTTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             CCCeEEEeCCCcCHHHHHHHhcC-CCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEECCHHHHHhhcCCCCCEEEEC
Confidence            45799999999999999866543 3599999999999999987542   2333 67889999876 67777899999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       130 ~  130 (202)
T 2fpo_A          130 P  130 (202)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=99.23  E-value=4e-11  Score=97.42  Aligned_cols=96  Identities=13%  Similarity=-0.081  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--------------
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--------------  139 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~--------------  139 (171)
                      .+.....+.+.+.....+..+|||||||+|.+...+.. ....+|+|+|+|++|++.+++......              
T Consensus        54 ~~~~~~~l~~~l~~~~~~~~~vLDiGcG~G~~~~l~~~-~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~  132 (289)
T 2g72_A           54 GPWKLRCLAQTFATGEVSGRTLIDIGSGPTVYQLLSAC-SHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACL  132 (289)
T ss_dssp             HHHHHHHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGG-GGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCCCCeEEEECCCcChHHHHhhc-cCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHH
Confidence            33334445444432223568999999999995543433 234699999999999999876431000              


Q ss_pred             cCC--------------CceeEEEccCCC-CCC-----CCCccceEEEecc
Q 030823          140 NDN--------------IETCFVVGDEEF-LPL-----KERYACRFFVLAL  170 (171)
Q Consensus       140 ~~~--------------~~~~~~~~D~e~-LPf-----~~~sfDlV~s~~~  170 (171)
                      ..+              ..+.++.+|++. +|+     ++++||+|+++.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~  183 (289)
T 2g72_A          133 IEGKGECWQDKERQLRARVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFC  183 (289)
T ss_dssp             HHCSCCCHHHHHHHHHHHEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESC
T ss_pred             hcCcccchhhhHHHHHhhhceEEecccCCCCCccccccCCCCCCEEEehhh
Confidence            000              013456678887 775     4567999999864

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=99.23  E-value=1.1e-11  Score=93.34  Aligned_cols=91  Identities=10%  Similarity=0.026  Sum_probs=65.3

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEcc
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGD  151 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D  151 (171)
                      .+.+.+.+.+.+... .+..+|||+|||+|.++..+.+. +..+|+++|+|++|++.+++...   ..+.  ++.++.+|
T Consensus        15 ~~~~~~~~~~~l~~~-~~~~~vLDlGcG~G~~~~~l~~~-~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~~~~~~d   89 (177)
T 2esr_A           15 SDKVRGAIFNMIGPY-FNGGRVLDLFAGSGGLAIEAVSR-GMSAAVLVEKNRKAQAIIQDNII---MTKAENRFTLLKME   89 (177)
T ss_dssp             ---CHHHHHHHHCSC-CCSCEEEEETCTTCHHHHHHHHT-TCCEEEEECCCHHHHHHHHHHHH---TTTCGGGEEEECSC
T ss_pred             HHHHHHHHHHHHHhh-cCCCeEEEeCCCCCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECc
Confidence            334444554444322 24579999999999999999875 44699999999999999987542   2332  47788899


Q ss_pred             CCC-CCCCCCccceEEEec
Q 030823          152 EEF-LPLKERYACRFFVLA  169 (171)
Q Consensus       152 ~e~-LPf~~~sfDlV~s~~  169 (171)
                      ... ++..++.||+|+++.
T Consensus        90 ~~~~~~~~~~~fD~i~~~~  108 (177)
T 2esr_A           90 AERAIDCLTGRFDLVFLDP  108 (177)
T ss_dssp             HHHHHHHBCSCEEEEEECC
T ss_pred             HHHhHHhhcCCCCEEEECC
Confidence            876 455567899999863

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=99.23  E-value=1.6e-11  Score=96.92  Aligned_cols=74  Identities=8%  Similarity=0.009  Sum_probs=60.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCC-----Cccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE-----RYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~-----~sfDl  164 (171)
                      .+..+|||+|||+|.++..|++.+  .+|+++|+|+.|++.+++..     ...++.++++|.+.+++..     ..||+
T Consensus        55 ~~~~~vLD~GcG~G~~~~~la~~~--~~v~gvD~s~~~~~~a~~~~-----~~~~~~~~~~d~~~~~~~~~~~~~~~~d~  127 (245)
T 3ggd_A           55 NPELPLIDFACGNGTQTKFLSQFF--PRVIGLDVSKSALEIAAKEN-----TAANISYRLLDGLVPEQAAQIHSEIGDAN  127 (245)
T ss_dssp             CTTSCEEEETCTTSHHHHHHHHHS--SCEEEEESCHHHHHHHHHHS-----CCTTEEEEECCTTCHHHHHHHHHHHCSCE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHHhC--CCEEEEECCHHHHHHHHHhC-----cccCceEEECcccccccccccccccCccE
Confidence            456799999999999999998865  39999999999999998743     3346889999999877543     34999


Q ss_pred             EEEecc
Q 030823          165 FFVLAL  170 (171)
Q Consensus       165 V~s~~~  170 (171)
                      |+++.+
T Consensus       128 v~~~~~  133 (245)
T 3ggd_A          128 IYMRTG  133 (245)
T ss_dssp             EEEESS
T ss_pred             EEEcch
Confidence            999864

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=99.23  E-value=3.6e-11  Score=94.05  Aligned_cols=76  Identities=11%  Similarity=0.055  Sum_probs=62.1

Q ss_pred             ccCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-CCCCCccceEE
Q 030823           89 RKTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-Pf~~~sfDlV~  166 (171)
                      ..+..+|||+||| +|.++..+++.. ..+|+++|+|++|++.+++...   ..+.++.++++|...+ ++++++||+|+
T Consensus        53 ~~~~~~vLDlG~G~~G~~~~~la~~~-~~~v~~vD~s~~~~~~a~~~~~---~~~~~v~~~~~d~~~~~~~~~~~fD~I~  128 (230)
T 3evz_A           53 LRGGEVALEIGTGHTAMMALMAEKFF-NCKVTATEVDEEFFEYARRNIE---RNNSNVRLVKSNGGIIKGVVEGTFDVIF  128 (230)
T ss_dssp             CCSSCEEEEECCTTTCHHHHHHHHHH-CCEEEEEECCHHHHHHHHHHHH---HTTCCCEEEECSSCSSTTTCCSCEEEEE
T ss_pred             cCCCCEEEEcCCCHHHHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHH---HhCCCcEEEeCCchhhhhcccCceeEEE
Confidence            4567899999999 999999998753 4799999999999999987542   2344788899997543 56779999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ++
T Consensus       129 ~n  130 (230)
T 3evz_A          129 SA  130 (230)
T ss_dssp             EC
T ss_pred             EC
Confidence            87

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=99.23  E-value=3.4e-11  Score=101.42  Aligned_cols=74  Identities=12%  Similarity=0.082  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||||||+|.++..+++. +..+|+|+|+| +|++.|++...   ..+.  .+.++++|.+.+|+++++||+|+++
T Consensus        66 ~~~~VLDvGcG~G~~~~~la~~-g~~~v~gvD~s-~~l~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~fD~Iis~  140 (349)
T 3q7e_A           66 KDKVVLDVGSGTGILCMFAAKA-GARKVIGIECS-SISDYAVKIVK---ANKLDHVVTIIKGKVEEVELPVEKVDIIISE  140 (349)
T ss_dssp             TTCEEEEESCTTSHHHHHHHHT-TCSEEEEEECS-THHHHHHHHHH---HTTCTTTEEEEESCTTTCCCSSSCEEEEEEC
T ss_pred             CCCEEEEEeccchHHHHHHHHC-CCCEEEEECcH-HHHHHHHHHHH---HcCCCCcEEEEECcHHHccCCCCceEEEEEc
Confidence            5589999999999999999886 45699999999 59999987543   2333  3889999999999999999999996


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       141 ~  141 (349)
T 3q7e_A          141 W  141 (349)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=99.23  E-value=9.2e-11  Score=90.34  Aligned_cols=72  Identities=8%  Similarity=-0.024  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||+|||+|.++..+.+.+ ..+|+|+|+|+.|++.+++...   ..+.++.++++|.+.+|   ++||+|+++.
T Consensus        49 ~~~~vlD~g~G~G~~~~~l~~~~-~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~~~~d~~~~~---~~~D~v~~~~  120 (207)
T 1wy7_A           49 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLG---EFKGKFKVFIGDVSEFN---SRVDIVIMNP  120 (207)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTG---GGTTSEEEEESCGGGCC---CCCSEEEECC
T ss_pred             CcCEEEEeeCCCCHHHHHHHHcC-CCEEEEEECCHHHHHHHHHHHH---HcCCCEEEEECchHHcC---CCCCEEEEcC
Confidence            56799999999999999998753 3589999999999999987542   22336888999998875   4899999873

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=99.23  E-value=5.1e-11  Score=93.96  Aligned_cols=74  Identities=12%  Similarity=0.068  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..|++..+.++|+++|+|++|++.+++...    ...++.++++|.+.    +|++ ++||+|
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~----~~~~v~~~~~d~~~~~~~~~~~-~~~D~v  147 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDACA----ERENIIPILGDANKPQEYANIV-EKVDVI  147 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHTT----TCTTEEEEECCTTCGGGGTTTS-CCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHhh----cCCCeEEEECCCCCcccccccC-ccEEEE
Confidence            35679999999999999999876445799999999999999987532    22468889999988    8876 899999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +..
T Consensus       148 ~~~  150 (230)
T 1fbn_A          148 YED  150 (230)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            853

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=99.23  E-value=5.8e-11  Score=96.09  Aligned_cols=76  Identities=13%  Similarity=-0.030  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc--CCCceeEEEccCCCCC---CCCCccceE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN--DNIETCFVVGDEEFLP---LKERYACRF  165 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~--~~~~~~~~~~D~e~LP---f~~~sfDlV  165 (171)
                      +..+|||||||+|.++..|++.+  .+|+|+|+|++|++.+++.......  ...++.+..+|...+|   +++++||+|
T Consensus        57 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~fD~V  134 (293)
T 3thr_A           57 GCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPAGDGFDAV  134 (293)
T ss_dssp             TCCEEEETTCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCCTTCEEEE
T ss_pred             CCCEEEEecCCCCHHHHHHHHCC--CeEEEEECCHHHHHHHHHhhhhcccccccceeeEeecChhhCccccccCCCeEEE
Confidence            55799999999999999998853  5999999999999999764311000  0124667889998888   889999999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +++
T Consensus       135 ~~~  137 (293)
T 3thr_A          135 ICL  137 (293)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            986

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=99.23  E-value=5.1e-11  Score=97.33  Aligned_cols=74  Identities=14%  Similarity=-0.019  Sum_probs=60.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+++..+ .+|+|+|+|++|++.+++...   ..+.  ++.++++|.+.+   +++||+|++
T Consensus        71 ~~~~~vLDiGcG~G~~~~~la~~~~-~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~---~~~fD~v~~  143 (302)
T 3hem_A           71 EPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFD---EVDSPRRKEVRIQGWEEF---DEPVDRIVS  143 (302)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEECCHHHHHHHHHHHH---HSCCSSCEEEEECCGGGC---CCCCSEEEE
T ss_pred             CCcCEEEEeeccCcHHHHHHHHhCC-CEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECCHHHc---CCCccEEEE
Confidence            4567999999999999999987633 799999999999999987543   2232  578899998776   799999999


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       144 ~~~  146 (302)
T 3hem_A          144 LGA  146 (302)
T ss_dssp             ESC
T ss_pred             cch
Confidence            753

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=99.23  E-value=2.3e-11  Score=101.23  Aligned_cols=76  Identities=16%  Similarity=0.142  Sum_probs=59.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|.++..+..+....+|+++|+|++|++.|++....   .+ .++.++++|+..+|  +++||+|++.
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~---~gl~~v~~v~gDa~~l~--d~~FDvV~~~  195 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEG---LGVDGVNVITGDETVID--GLEFDVLMVA  195 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHH---HTCCSEEEEESCGGGGG--GCCCSEEEEC
T ss_pred             CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHh---cCCCCeEEEECchhhCC--CCCcCEEEEC
Confidence            467899999999997764443323457999999999999999875431   22 36889999998876  7999999987


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      ++
T Consensus       196 a~  197 (298)
T 3fpf_A          196 AL  197 (298)
T ss_dssp             TT
T ss_pred             CC
Confidence            64

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=99.22  E-value=6.6e-11  Score=92.64  Aligned_cols=86  Identities=17%  Similarity=0.176  Sum_probs=65.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP  156 (171)
                      +...+.+.+.  ..+..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++...   ..+ ++.++++|.+..+
T Consensus        58 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~---~~~-~v~~~~~d~~~~~  129 (231)
T 1vbf_A           58 LGIFMLDELD--LHKGQKVLEIGTGIGYYTALIAEIV--DKVVSVEINEKMYNYASKLLS---YYN-NIKLILGDGTLGY  129 (231)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEEESCHHHHHHHHHHHT---TCS-SEEEEESCGGGCC
T ss_pred             HHHHHHHhcC--CCCCCEEEEEcCCCCHHHHHHHHHc--CEEEEEeCCHHHHHHHHHHHh---hcC-CeEEEECCccccc
Confidence            3344444432  2456799999999999999998854  799999999999999987542   122 6888999987743


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                      .++++||+|+++..
T Consensus       130 ~~~~~fD~v~~~~~  143 (231)
T 1vbf_A          130 EEEKPYDRVVVWAT  143 (231)
T ss_dssp             GGGCCEEEEEESSB
T ss_pred             ccCCCccEEEECCc
Confidence            35789999998753

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=99.22  E-value=8.5e-11  Score=100.56  Aligned_cols=73  Identities=10%  Similarity=-0.013  Sum_probs=62.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+.+.  ..+|+++|+|+.|++.+++...   ..+.++.++++|....+.++++||+|+++
T Consensus       233 ~~~~VLDlGcG~G~~~~~la~~--g~~V~gvDis~~al~~A~~n~~---~~~~~v~~~~~D~~~~~~~~~~fD~Ii~n  305 (381)
T 3dmg_A          233 RGRQVLDLGAGYGALTLPLARM--GAEVVGVEDDLASVLSLQKGLE---ANALKAQALHSDVDEALTEEARFDIIVTN  305 (381)
T ss_dssp             TTCEEEEETCTTSTTHHHHHHT--TCEEEEEESBHHHHHHHHHHHH---HTTCCCEEEECSTTTTSCTTCCEEEEEEC
T ss_pred             CCCEEEEEeeeCCHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHH---HcCCCeEEEEcchhhccccCCCeEEEEEC
Confidence            5579999999999999999885  3699999999999999987542   24455788999999998878999999997

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=99.21  E-value=1e-10  Score=88.06  Aligned_cols=85  Identities=18%  Similarity=0.163  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-c--eeEEEccCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E--TCFVVGDEE  153 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~--~~~~~~D~e  153 (171)
                      .++.+.+.+.  ..+..+|||+|||+|.++..+.+.  ..+++++|+|++|++.+++...   ..+. +  +.++.+|..
T Consensus        40 ~~~~l~~~~~--~~~~~~vLdiG~G~G~~~~~~~~~--~~~v~~~D~~~~~~~~a~~~~~---~~~~~~~~~~~~~~d~~  112 (194)
T 1dus_A           40 GTKILVENVV--VDKDDDILDLGCGYGVIGIALADE--VKSTTMADINRRAIKLAKENIK---LNNLDNYDIRVVHSDLY  112 (194)
T ss_dssp             HHHHHHHHCC--CCTTCEEEEETCTTSHHHHHHGGG--SSEEEEEESCHHHHHHHHHHHH---HTTCTTSCEEEEECSTT
T ss_pred             HHHHHHHHcc--cCCCCeEEEeCCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHHHHH---HcCCCccceEEEECchh
Confidence            3344444432  235679999999999999999875  5799999999999999987542   1233 3  788999987


Q ss_pred             CCCCCCCccceEEEec
Q 030823          154 FLPLKERYACRFFVLA  169 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~  169 (171)
                      . ++++++||+|+++.
T Consensus       113 ~-~~~~~~~D~v~~~~  127 (194)
T 1dus_A          113 E-NVKDRKYNKIITNP  127 (194)
T ss_dssp             T-TCTTSCEEEEEECC
T ss_pred             c-ccccCCceEEEECC
Confidence            7 45578999999864

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=99.21  E-value=1.7e-11  Score=100.58  Aligned_cols=93  Identities=14%  Similarity=0.144  Sum_probs=72.1

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      .++++-.....+++.+++.+. + .+. +|||||||+|.++..|.+.+  .+|+++|++++|++.+++..     ...++
T Consensus        24 ~~GQnfL~d~~i~~~Iv~~~~-~-~~~-~VLEIG~G~G~lt~~L~~~~--~~V~avEid~~~~~~l~~~~-----~~~~v   93 (271)
T 3fut_A           24 RFGQNFLVSEAHLRRIVEAAR-P-FTG-PVFEVGPGLGALTRALLEAG--AEVTAIEKDLRLRPVLEETL-----SGLPV   93 (271)
T ss_dssp             TSSCCEECCHHHHHHHHHHHC-C-CCS-CEEEECCTTSHHHHHHHHTT--CCEEEEESCGGGHHHHHHHT-----TTSSE
T ss_pred             cCCccccCCHHHHHHHHHhcC-C-CCC-eEEEEeCchHHHHHHHHHcC--CEEEEEECCHHHHHHHHHhc-----CCCCE
Confidence            355554444566677766653 2 344 99999999999999999854  79999999999999998753     23468


Q ss_pred             eEEEccCCCCCCCCC-ccceEEEe
Q 030823          146 CFVVGDEEFLPLKER-YACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~-sfDlV~s~  168 (171)
                      .++.+|...+++++. .+|.|++|
T Consensus        94 ~vi~~D~l~~~~~~~~~~~~iv~N  117 (271)
T 3fut_A           94 RLVFQDALLYPWEEVPQGSLLVAN  117 (271)
T ss_dssp             EEEESCGGGSCGGGSCTTEEEEEE
T ss_pred             EEEECChhhCChhhccCccEEEec
Confidence            889999999998653 78999987

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=99.21  E-value=6.6e-11  Score=95.86  Aligned_cols=75  Identities=17%  Similarity=0.055  Sum_probs=60.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..++...+..+|+++|+|++|++.+++....   .+. ++.++++|... ++++++||+|+++
T Consensus       108 ~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~---~~~~~v~~~~~d~~~-~~~~~~fD~Iv~n  183 (276)
T 2b3t_A          108 EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQH---LAIKNIHILQSDWFS-ALAGQQFAMIVSN  183 (276)
T ss_dssp             SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHH---HTCCSEEEECCSTTG-GGTTCCEEEEEEC
T ss_pred             cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH---cCCCceEEEEcchhh-hcccCCccEEEEC
Confidence            456799999999999999998655668999999999999999875421   222 58888999876 3457899999997

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=99.21  E-value=2.5e-11  Score=96.64  Aligned_cols=75  Identities=9%  Similarity=0.025  Sum_probs=60.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--CCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L--Pf~~~sfDlV~  166 (171)
                      ..+..+|||||||+|..+..+++.. ..+++++|+|++|++.|++...   ..+.++.++.+|.+.+  ++++++||.|+
T Consensus        58 ~~~G~rVLdiG~G~G~~~~~~~~~~-~~~v~~id~~~~~~~~a~~~~~---~~~~~~~~~~~~a~~~~~~~~~~~FD~i~  133 (236)
T 3orh_A           58 SSKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAP---RQTHKVIPLKGLWEDVAPTLPDGHFDGIL  133 (236)
T ss_dssp             TTTCEEEEEECCTTSHHHHHHTTSC-EEEEEEEECCHHHHHHHHHHGG---GCSSEEEEEESCHHHHGGGSCTTCEEEEE
T ss_pred             ccCCCeEEEECCCccHHHHHHHHhC-CcEEEEEeCCHHHHHHHHHHHh---hCCCceEEEeehHHhhcccccccCCceEE
Confidence            3567899999999999999998753 4689999999999999987542   3455677788887644  68899999997


Q ss_pred             E
Q 030823          167 V  167 (171)
Q Consensus       167 s  167 (171)
                      .
T Consensus       134 ~  134 (236)
T 3orh_A          134 Y  134 (236)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus}

Probab=99.21  E-value=1.7e-11  Score=91.52  Aligned_cols=69  Identities=12%  Similarity=-0.046  Sum_probs=58.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++.       ..++.++.+|   +|+++++||+|+++.
T Consensus        16 ~~~~~vLDiG~G~G~~~~~l~~~~--~~v~~vD~s~~~~~~a~~~-------~~~v~~~~~d---~~~~~~~~D~v~~~~   83 (170)
T 3i9f_A           16 GKKGVIVDYGCGNGFYCKYLLEFA--TKLYCIDINVIALKEVKEK-------FDSVITLSDP---KEIPDNSVDFILFAN   83 (170)
T ss_dssp             SCCEEEEEETCTTCTTHHHHHTTE--EEEEEECSCHHHHHHHHHH-------CTTSEEESSG---GGSCTTCEEEEEEES
T ss_pred             CCCCeEEEECCCCCHHHHHHHhhc--CeEEEEeCCHHHHHHHHHh-------CCCcEEEeCC---CCCCCCceEEEEEcc
Confidence            355799999999999999998854  4999999999999999863       2357778888   888899999999876


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus        84 ~   84 (170)
T 3i9f_A           84 S   84 (170)
T ss_dssp             C
T ss_pred             c
Confidence            4

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=99.20  E-value=4.6e-11  Score=94.85  Aligned_cols=77  Identities=16%  Similarity=0.137  Sum_probs=58.0

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC-HHHHHHH---HHhhhhhccCCC-ceeEEEccCCCCCCC-CCcc
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS-YDMLKLC---KDAQQDAHNDNI-ETCFVVGDEEFLPLK-ERYA  162 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S-~~mL~~a---~~~~~~~~~~~~-~~~~~~~D~e~LPf~-~~sf  162 (171)
                      ..+..+|||||||+|.++..|++..+..+|+|+|+| +.|++.|   +++.   ...+. ++.++++|.+.+|.. .+.+
T Consensus        22 ~~~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~---~~~~~~~v~~~~~d~~~l~~~~~d~v   98 (225)
T 3p2e_A           22 GQFDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKP---SKGGLSNVVFVIAAAESLPFELKNIA   98 (225)
T ss_dssp             TTCSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCG---GGTCCSSEEEECCBTTBCCGGGTTCE
T ss_pred             CCCCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHH---HHcCCCCeEEEEcCHHHhhhhccCeE
Confidence            356689999999999999999865567899999999 8888886   4322   12333 688999999999742 2556


Q ss_pred             ceEEEe
Q 030823          163 CRFFVL  168 (171)
Q Consensus       163 DlV~s~  168 (171)
                      |.|+++
T Consensus        99 ~~i~~~  104 (225)
T 3p2e_A           99 DSISIL  104 (225)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            666554

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=99.20  E-value=6.2e-11  Score=97.29  Aligned_cols=92  Identities=11%  Similarity=0.062  Sum_probs=69.6

Q ss_pred             CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--Cce
Q 030823           68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IET  145 (171)
Q Consensus        68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~  145 (171)
                      +++-.....+++.+++.+.  ..+..+|||+|||+|.++..|.+.+  .+|+++|+|++|++.+++...   ..+  .++
T Consensus         7 gq~fl~d~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~L~~~~--~~v~~vD~~~~~~~~a~~~~~---~~~~~~~v   79 (285)
T 1zq9_A            7 GQHILKNPLIINSIIDKAA--LRPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQ---GTPVASKL   79 (285)
T ss_dssp             -CCEECCHHHHHHHHHHTC--CCTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHT---TSTTGGGE
T ss_pred             CcCccCCHHHHHHHHHhcC--CCCCCEEEEEcCcccHHHHHHHhhC--CEEEEEECCHHHHHHHHHHHH---hcCCCCce
Confidence            4433334566666666543  2356799999999999999998854  699999999999999987532   122  357


Q ss_pred             eEEEccCCCCCCCCCccceEEEe
Q 030823          146 CFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++++|...++++  +||+|+++
T Consensus        80 ~~~~~D~~~~~~~--~fD~vv~n  100 (285)
T 1zq9_A           80 QVLVGDVLKTDLP--FFDTCVAN  100 (285)
T ss_dssp             EEEESCTTTSCCC--CCSEEEEE
T ss_pred             EEEEcceecccch--hhcEEEEe
Confidence            8899999988875  79999996

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=99.19  E-value=9.4e-11  Score=94.70  Aligned_cols=73  Identities=11%  Similarity=-0.003  Sum_probs=59.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+++..+ .+|+|+|+|++|++.+++...   ..+  .++.++++|.+.+|   ++||+|++
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~-~~v~gvd~s~~~~~~a~~~~~---~~~~~~~~~~~~~d~~~~~---~~fD~v~~  135 (287)
T 1kpg_A           63 QPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVA---NSENLRSKRVLLAGWEQFD---EPVDRIVS  135 (287)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHH---TCCCCSCEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCcCEEEEECCcccHHHHHHHHHcC-CEEEEEECCHHHHHHHHHHHH---hcCCCCCeEEEECChhhCC---CCeeEEEE
Confidence            4567999999999999999985333 499999999999999987542   122  25788999998776   89999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       136 ~~  137 (287)
T 1kpg_A          136 IG  137 (287)
T ss_dssp             ES
T ss_pred             eC
Confidence            75

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=99.19  E-value=4.5e-11  Score=95.99  Aligned_cols=94  Identities=9%  Similarity=0.004  Sum_probs=67.7

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      .++++-.....+++.+++.+.  ..+..+|||+|||+|.++..|.+.+  .+|+++|+|++|++.+++...    ...++
T Consensus         7 ~~gQ~fl~d~~~~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~l~~~~--~~v~~vD~~~~~~~~a~~~~~----~~~~v   78 (244)
T 1qam_A            7 KHSQNFITSKHNIDKIMTNIR--LNEHDNIFEIGSGKGHFTLELVQRC--NFVTAIEIDHKLCKTTENKLV----DHDNF   78 (244)
T ss_dssp             ---CCBCCCHHHHHHHHTTCC--CCTTCEEEEECCTTSHHHHHHHHHS--SEEEEECSCHHHHHHHHHHTT----TCCSE
T ss_pred             cCCccccCCHHHHHHHHHhCC--CCCCCEEEEEeCCchHHHHHHHHcC--CeEEEEECCHHHHHHHHHhhc----cCCCe
Confidence            456654444566666655442  2356799999999999999999864  799999999999999987531    12368


Q ss_pred             eEEEccCCCCCCCC-CccceEEEe
Q 030823          146 CFVVGDEEFLPLKE-RYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~-~sfDlV~s~  168 (171)
                      .++++|...+|+++ ..|+ |++|
T Consensus        79 ~~~~~D~~~~~~~~~~~~~-vv~n  101 (244)
T 1qam_A           79 QVLNKDILQFKFPKNQSYK-IFGN  101 (244)
T ss_dssp             EEECCCGGGCCCCSSCCCE-EEEE
T ss_pred             EEEEChHHhCCcccCCCeE-EEEe
Confidence            88999999999875 4564 4443

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=99.19  E-value=8.2e-11  Score=93.31  Aligned_cols=76  Identities=11%  Similarity=-0.087  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---------------------------
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---------------------------  143 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---------------------------  143 (171)
                      +..+|||+|||+|.++..++..+. .+|+++|+|+.|++.+++...   ....                           
T Consensus        56 ~~~~vLDlGcG~G~~~~~l~~~~~-~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  131 (265)
T 2i62_A           56 KGELLIDIGSGPTIYQLLSACESF-TEIIVSDYTDQNLWELQKWLK---KEPGAFDWSPVVTYVCDLEGNRMKGPEKEEK  131 (265)
T ss_dssp             CEEEEEEESCTTCCGGGTTGGGTE-EEEEEEESCHHHHHHHHHHHT---TCTTCCCCHHHHHHHHHHTTTCSCHHHHHHH
T ss_pred             CCCEEEEECCCccHHHHHHhhccc-CeEEEecCCHHHHHHHHHHHh---cCCccccchhhhhhhhcccccccchHHHHHH
Confidence            447899999999999998887543 599999999999999987542   1110                           


Q ss_pred             ---ce-eEEEccCCCCC-CCC---CccceEEEecc
Q 030823          144 ---ET-CFVVGDEEFLP-LKE---RYACRFFVLAL  170 (171)
Q Consensus       144 ---~~-~~~~~D~e~LP-f~~---~sfDlV~s~~~  170 (171)
                         .+ .++++|...++ +++   ++||+|+++.+
T Consensus       132 l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~  166 (265)
T 2i62_A          132 LRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLC  166 (265)
T ss_dssp             HHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESC
T ss_pred             hhhhheeEEEeeeccCCCCCccccCCccEEEEhhh
Confidence               15 78899988764 466   89999999753

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=99.19  E-value=7.4e-11  Score=95.29  Aligned_cols=75  Identities=11%  Similarity=0.064  Sum_probs=62.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc---CCC--ceeEEEccCCCC-------CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNI--ETCFVVGDEEFL-------PLK  158 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~---~~~--~~~~~~~D~e~L-------Pf~  158 (171)
                      +..+|||+|||+|.++..++.+.+..+|+++|++++|++.+++...   .   .+.  ++.++.+|...+       +++
T Consensus        36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~---~~~~~~l~~~v~~~~~D~~~~~~~~~~~~~~  112 (260)
T 2ozv_A           36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLE---LPDNAAFSARIEVLEADVTLRAKARVEAGLP  112 (260)
T ss_dssp             SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTT---SGGGTTTGGGEEEEECCTTCCHHHHHHTTCC
T ss_pred             CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHH---hhhhCCCcceEEEEeCCHHHHhhhhhhhccC
Confidence            4579999999999999999887666799999999999999987542   2   233  378899999887       367


Q ss_pred             CCccceEEEe
Q 030823          159 ERYACRFFVL  168 (171)
Q Consensus       159 ~~sfDlV~s~  168 (171)
                      +++||+|+++
T Consensus       113 ~~~fD~Vv~n  122 (260)
T 2ozv_A          113 DEHFHHVIMN  122 (260)
T ss_dssp             TTCEEEEEEC
T ss_pred             CCCcCEEEEC
Confidence            8999999997

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=99.19  E-value=9.6e-11  Score=91.54  Aligned_cols=81  Identities=17%  Similarity=0.088  Sum_probs=62.2

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhcc---CCCceeEEEccCCCCCCCCCccce
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVGDEEFLPLKERYACR  164 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~---~~~~~~~~~~D~e~LPf~~~sfDl  164 (171)
                      ..+..+|||+|||+|.++..+++. ++..+|+++|+|+.|++.+++.......   ...++.++++|....+.++++||+
T Consensus        75 ~~~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~v~~~~~d~~~~~~~~~~fD~  154 (226)
T 1i1n_A           75 LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGRMGYAEEAPYDA  154 (226)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGGGCCGGGCCEEE
T ss_pred             CCCCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhhcccccCCCcEEEEECCcccCcccCCCcCE
Confidence            346689999999999999999875 2446999999999999999865421000   012577889998877777889999


Q ss_pred             EEEec
Q 030823          165 FFVLA  169 (171)
Q Consensus       165 V~s~~  169 (171)
                      |++..
T Consensus       155 i~~~~  159 (226)
T 1i1n_A          155 IHVGA  159 (226)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99875

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=99.18  E-value=9.6e-11  Score=92.73  Aligned_cols=76  Identities=9%  Similarity=0.128  Sum_probs=62.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC-CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP-LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LP-f~~~sfDlV~  166 (171)
                      +..+|||+|||+|..+..|++..+..+|+++|+|++|++.+++...   ..+.  ++.++++|... +| ..+++||+|+
T Consensus        71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~~fD~V~  147 (232)
T 3ntv_A           71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLA---TYHFENQVRIIEGNALEQFENVNDKVYDMIF  147 (232)
T ss_dssp             TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHH---HTTCTTTEEEEESCGGGCHHHHTTSCEEEEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECCHHHHHHhhccCCccEEE
Confidence            5689999999999999999986567899999999999999987543   2332  58889999865 45 4478999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +.+
T Consensus       148 ~~~  150 (232)
T 3ntv_A          148 IDA  150 (232)
T ss_dssp             EET
T ss_pred             EcC
Confidence            865

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=99.18  E-value=5.3e-11  Score=93.62  Aligned_cols=77  Identities=9%  Similarity=0.003  Sum_probs=58.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+....+..+|+++|+|+.|++.+++...   ..++...+.++|.... .++++||+|+++-
T Consensus        48 ~~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~---~~g~~~~v~~~d~~~~-~~~~~~DvVLa~k  123 (200)
T 3fzg_A           48 KHVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIG---KLKTTIKYRFLNKESD-VYKGTYDVVFLLK  123 (200)
T ss_dssp             CCCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHH---HSCCSSEEEEECCHHH-HTTSEEEEEEEET
T ss_pred             CCCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHH---hcCCCccEEEeccccc-CCCCCcChhhHhh
Confidence            55789999999999999999765566799999999999999987542   2344323344665544 4679999999874


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       124 ~  124 (200)
T 3fzg_A          124 M  124 (200)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=99.18  E-value=9.9e-11  Score=90.51  Aligned_cols=70  Identities=19%  Similarity=0.235  Sum_probs=58.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC--CCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF--LPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~--LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+.+. + .+++++|+|++|++.+++..         ..++++|.+.  +|+++++||+|++
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~-~-~~~~~~D~~~~~~~~~~~~~---------~~~~~~d~~~~~~~~~~~~fD~v~~   99 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKEN-G-TRVSGIEAFPEAAEQAKEKL---------DHVVLGDIETMDMPYEEEQFDCVIF   99 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTT-T-CEEEEEESSHHHHHHHHTTS---------SEEEESCTTTCCCCSCTTCEEEEEE
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhc-C-CeEEEEeCCHHHHHHHHHhC---------CcEEEcchhhcCCCCCCCccCEEEE
Confidence            46689999999999999999886 3 79999999999999997521         2568889876  7888899999998


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       100 ~~~  102 (230)
T 3cc8_A          100 GDV  102 (230)
T ss_dssp             ESC
T ss_pred             CCh
Confidence            753

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=99.18  E-value=7.2e-11  Score=97.61  Aligned_cols=93  Identities=12%  Similarity=-0.019  Sum_probs=65.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-Cce
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IET  145 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~  145 (171)
                      ++++-...+.+.+.+++.+.  ..+..+|||+|||+|.++..|++.  ..+|+++|+|+.|++.+++...   ..+ .++
T Consensus        20 ~Gq~fl~~~~i~~~i~~~~~--~~~~~~VLDiG~G~G~lt~~La~~--~~~v~~vDi~~~~~~~a~~~~~---~~~~~~v   92 (299)
T 2h1r_A           20 QGQHLLKNPGILDKIIYAAK--IKSSDIVLEIGCGTGNLTVKLLPL--AKKVITIDIDSRMISEVKKRCL---YEGYNNL   92 (299)
T ss_dssp             ---CEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHTTT--SSEEEEECSCHHHHHHHHHHHH---HTTCCCE
T ss_pred             cccceecCHHHHHHHHHhcC--CCCcCEEEEEcCcCcHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHH---HcCCCce
Confidence            45543334556666666543  235679999999999999999985  4799999999999999987532   122 357


Q ss_pred             eEEEccCCCCCCCCCccceEEEe
Q 030823          146 CFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++.+|...+|++  +||+|+++
T Consensus        93 ~~~~~D~~~~~~~--~~D~Vv~n  113 (299)
T 2h1r_A           93 EVYEGDAIKTVFP--KFDVCTAN  113 (299)
T ss_dssp             EC----CCSSCCC--CCSEEEEE
T ss_pred             EEEECchhhCCcc--cCCEEEEc
Confidence            8899999988874  89999986

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=99.18  E-value=3.7e-11  Score=90.59  Aligned_cols=88  Identities=15%  Similarity=0.042  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~  154 (171)
                      +.+.+.+.+... .+..+|||+|||+|.++..+... +..+|+++|+|++|++.+++...   ..+  .++.++++|...
T Consensus        31 ~~~~~~~~l~~~-~~~~~vLD~GcG~G~~~~~~~~~-~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~~~~~~d~~~  105 (187)
T 2fhp_A           31 VKESIFNMIGPY-FDGGMALDLYSGSGGLAIEAVSR-GMDKSICIEKNFAALKVIKENIA---ITKEPEKFEVRKMDANR  105 (187)
T ss_dssp             HHHHHHHHHCSC-CSSCEEEETTCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH---HHTCGGGEEEEESCHHH
T ss_pred             HHHHHHHHHHhh-cCCCCEEEeCCccCHHHHHHHHc-CCCEEEEEECCHHHHHHHHHHHH---HhCCCcceEEEECcHHH
Confidence            334444444322 24579999999999999988763 34699999999999999987542   122  257888998765


Q ss_pred             C----CCCCCccceEEEec
Q 030823          155 L----PLKERYACRFFVLA  169 (171)
Q Consensus       155 L----Pf~~~sfDlV~s~~  169 (171)
                      .    |+++++||+|+++.
T Consensus       106 ~~~~~~~~~~~fD~i~~~~  124 (187)
T 2fhp_A          106 ALEQFYEEKLQFDLVLLDP  124 (187)
T ss_dssp             HHHHHHHTTCCEEEEEECC
T ss_pred             HHHHHHhcCCCCCEEEECC
Confidence            3    33478999999863

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=99.17  E-value=1.1e-10  Score=98.01  Aligned_cols=75  Identities=15%  Similarity=0.046  Sum_probs=62.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+++.+ ..+|+|+|+|+ |++.+++...   ..+  .++.++.+|.+.+++++++||+|++
T Consensus        63 ~~~~~VLDiGcGtG~ls~~la~~g-~~~v~gvD~s~-~~~~a~~~~~---~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs  137 (340)
T 2fyt_A           63 FKDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSE-ILYQAMDIIR---LNKLEDTITLIKGKIEEVHLPVEKVDVIIS  137 (340)
T ss_dssp             TTTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESST-HHHHHHHHHH---HTTCTTTEEEEESCTTTSCCSCSCEEEEEE
T ss_pred             cCCCEEEEeeccCcHHHHHHHHcC-CCEEEEEChHH-HHHHHHHHHH---HcCCCCcEEEEEeeHHHhcCCCCcEEEEEE
Confidence            356799999999999999998753 46999999996 9999987542   122  3588899999999998899999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       138 ~~  139 (340)
T 2fyt_A          138 EW  139 (340)
T ss_dssp             CC
T ss_pred             cC
Confidence            75

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=99.17  E-value=4.3e-11  Score=94.32  Aligned_cols=76  Identities=11%  Similarity=-0.036  Sum_probs=59.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC---CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF---LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~---LPf~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..|++.. +..+|+++|+|++|++.+.+...    ...++.++++|.+.   +|+.+++||+|
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~~~a~----~~~~v~~~~~d~~~~~~~~~~~~~~D~V  151 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLINLAK----KRTNIIPVIEDARHPHKYRMLIAMVDVI  151 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH----HCTTEEEECSCTTCGGGGGGGCCCEEEE
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHhh----ccCCeEEEEcccCChhhhcccCCcEEEE
Confidence            356799999999999999998753 45799999999887766554321    11457889999887   56678899999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +++.
T Consensus       152 ~~~~  155 (233)
T 2ipx_A          152 FADV  155 (233)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9864

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=99.17  E-value=1.2e-10  Score=96.55  Aligned_cols=89  Identities=15%  Similarity=0.107  Sum_probs=67.1

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      +...+++.+.  ..+..+|||+|||+|.++..+++.+. ..+|+++|+|++|++.+++...   ..+. ++.++++|.+.
T Consensus        63 ~~~~l~~~l~--~~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~---~~g~~~v~~~~~d~~~  137 (317)
T 1dl5_A           63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE---RLGIENVIFVCGDGYY  137 (317)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEESCGGG
T ss_pred             HHHHHHHhcC--CCCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCeEEEECChhh
Confidence            3344444432  24568999999999999999987554 3679999999999999987542   2232 47889999988


Q ss_pred             CCCCCCccceEEEecc
Q 030823          155 LPLKERYACRFFVLAL  170 (171)
Q Consensus       155 LPf~~~sfDlV~s~~~  170 (171)
                      .+.++++||+|++...
T Consensus       138 ~~~~~~~fD~Iv~~~~  153 (317)
T 1dl5_A          138 GVPEFSPYDVIFVTVG  153 (317)
T ss_dssp             CCGGGCCEEEEEECSB
T ss_pred             ccccCCCeEEEEEcCC
Confidence            6666789999999753

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=99.17  E-value=7.2e-11  Score=95.07  Aligned_cols=96  Identities=13%  Similarity=0.065  Sum_probs=70.9

Q ss_pred             CChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           69 PNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        69 ~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      .-++.+..+|..+..-|..+ .++.++|||+|||+|.++..|++. ++.++|+++|+|++|++.+++..    ....++.
T Consensus        54 ~w~p~rsklaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~a----~~~~ni~  129 (233)
T 4df3_A           54 EWNAYRSKLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTVV----RDRRNIF  129 (233)
T ss_dssp             ECCTTTCHHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHHS----TTCTTEE
T ss_pred             eECCCchHHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHhh----HhhcCee
Confidence            33444445555554444433 367899999999999999999864 57789999999999999997754    2334677


Q ss_pred             EEEccCC---CCCCCCCccceEEEe
Q 030823          147 FVVGDEE---FLPLKERYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e---~LPf~~~sfDlV~s~  168 (171)
                      ++.+|..   ..|+..+++|+|++.
T Consensus       130 ~V~~d~~~p~~~~~~~~~vDvVf~d  154 (233)
T 4df3_A          130 PILGDARFPEKYRHLVEGVDGLYAD  154 (233)
T ss_dssp             EEESCTTCGGGGTTTCCCEEEEEEC
T ss_pred             EEEEeccCccccccccceEEEEEEe
Confidence            7887764   457788999999863

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=99.16  E-value=5.7e-11  Score=95.41  Aligned_cols=74  Identities=11%  Similarity=0.058  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC--CCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      +..+|||+|||+|.++..+++.++ .+|+|+|++++|++.+++...   ..+.  ++.++++|...++  +++++||+|+
T Consensus        49 ~~~~vLDlG~G~G~~~~~la~~~~-~~v~gvDi~~~~~~~a~~n~~---~~~~~~~v~~~~~D~~~~~~~~~~~~fD~Ii  124 (259)
T 3lpm_A           49 RKGKIIDLCSGNGIIPLLLSTRTK-AKIVGVEIQERLADMAKRSVA---YNQLEDQIEIIEYDLKKITDLIPKERADIVT  124 (259)
T ss_dssp             SCCEEEETTCTTTHHHHHHHTTCC-CEEEEECCSHHHHHHHHHHHH---HTTCTTTEEEECSCGGGGGGTSCTTCEEEEE
T ss_pred             CCCEEEEcCCchhHHHHHHHHhcC-CcEEEEECCHHHHHHHHHHHH---HCCCcccEEEEECcHHHhhhhhccCCccEEE
Confidence            568999999999999999988654 399999999999999987542   2233  4788999998876  5689999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ++
T Consensus       125 ~n  126 (259)
T 3lpm_A          125 CN  126 (259)
T ss_dssp             EC
T ss_pred             EC
Confidence            96

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=99.16  E-value=2.2e-10  Score=89.35  Aligned_cols=64  Identities=17%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ..+|||+|||+|.++..+...      +++|+|++|++.+++       .  ++.++++|.+.+|+++++||+|+++.+
T Consensus        48 ~~~vLDiG~G~G~~~~~l~~~------~~vD~s~~~~~~a~~-------~--~~~~~~~d~~~~~~~~~~fD~v~~~~~  111 (219)
T 1vlm_A           48 EGRGVEIGVGTGRFAVPLKIK------IGVEPSERMAEIARK-------R--GVFVLKGTAENLPLKDESFDFALMVTT  111 (219)
T ss_dssp             SSCEEEETCTTSTTHHHHTCC------EEEESCHHHHHHHHH-------T--TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             CCcEEEeCCCCCHHHHHHHHH------hccCCCHHHHHHHHh-------c--CCEEEEcccccCCCCCCCeeEEEEcch
Confidence            689999999999999998762      999999999999976       2  467889999999999999999998754

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=99.15  E-value=2.1e-10  Score=90.82  Aligned_cols=88  Identities=14%  Similarity=0.012  Sum_probs=67.8

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhcc-CCCceeEEEccCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFL  155 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~-~~~~~~~~~~D~e~L  155 (171)
                      +..+++.+.  ..+..+|||+|||+|.++..+++. ++..+|+++|+|++|++.+++....  . ...++.++.+|....
T Consensus        85 ~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~--~~g~~~v~~~~~d~~~~  160 (258)
T 2pwy_A           85 ASAMVTLLD--LAPGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRA--FWQVENVRFHLGKLEEA  160 (258)
T ss_dssp             HHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH--HCCCCCEEEEESCGGGC
T ss_pred             HHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH--hcCCCCEEEEECchhhc
Confidence            344444432  245689999999999999999876 4568999999999999999875421  1 123578899999988


Q ss_pred             CCCCCccceEEEec
Q 030823          156 PLKERYACRFFVLA  169 (171)
Q Consensus       156 Pf~~~sfDlV~s~~  169 (171)
                      |+++++||+|+++.
T Consensus       161 ~~~~~~~D~v~~~~  174 (258)
T 2pwy_A          161 ELEEAAYDGVALDL  174 (258)
T ss_dssp             CCCTTCEEEEEEES
T ss_pred             CCCCCCcCEEEECC
Confidence            88889999999853

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=99.15  E-value=2.2e-10  Score=93.55  Aligned_cols=76  Identities=11%  Similarity=0.127  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCC---cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----------
Q 030823           91 TFPTALCLGGSL---EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------  156 (171)
Q Consensus        91 ~~~~vLDlGcGt---G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----------  156 (171)
                      ...+|||||||+   |.++..+.+..+..+|+++|+|+.||+.++++..    ...++.++++|....+           
T Consensus        77 ~~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~----~~~~v~~~~~D~~~~~~~~~~~~~~~~  152 (274)
T 2qe6_A           77 GISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLA----KDPNTAVFTADVRDPEYILNHPDVRRM  152 (274)
T ss_dssp             CCCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHT----TCTTEEEEECCTTCHHHHHHSHHHHHH
T ss_pred             CCCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcC----CCCCeEEEEeeCCCchhhhccchhhcc
Confidence            457999999999   9988877765566899999999999999987541    2246889999986531           


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                      ++.++||+|+++.+
T Consensus       153 ~d~~~~d~v~~~~v  166 (274)
T 2qe6_A          153 IDFSRPAAIMLVGM  166 (274)
T ss_dssp             CCTTSCCEEEETTT
T ss_pred             CCCCCCEEEEEech
Confidence            23358999998764

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=99.15  E-value=1.1e-10  Score=95.19  Aligned_cols=75  Identities=13%  Similarity=0.061  Sum_probs=61.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..++..+.. +|+|+|+|++|++.+++...   ..+.  .+.++++|...++. +++||+|++
T Consensus       124 ~~~~~VLDlgcG~G~~~~~la~~~~~-~V~~vD~s~~~~~~a~~n~~---~n~~~~~v~~~~~D~~~~~~-~~~fD~Vi~  198 (278)
T 2frn_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA-KVIAIEKDPYTFKFLVENIH---LNKVEDRMSAYNMDNRDFPG-ENIADRILM  198 (278)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC-EEEEECCCHHHHHHHHHHHH---HTTCTTTEEEECSCTTTCCC-CSCEEEEEE
T ss_pred             CCCCEEEEecccCCHHHHHHHHhCCC-EEEEEECCHHHHHHHHHHHH---HcCCCceEEEEECCHHHhcc-cCCccEEEE
Confidence            45689999999999999999876533 79999999999999987542   2233  37789999999887 889999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       199 ~~  200 (278)
T 2frn_A          199 GY  200 (278)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=99.15  E-value=9.3e-11  Score=101.78  Aligned_cols=93  Identities=12%  Similarity=0.058  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh----hcc---CCCceeE
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD----AHN---DNIETCF  147 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~----~~~---~~~~~~~  147 (171)
                      ......+++.+.  ..+..+|||||||+|.++..++...+..+|+|+|+|++|++.|++....    ...   ...++.+
T Consensus       159 ~~~i~~il~~l~--l~~gd~VLDLGCGtG~l~l~lA~~~g~~kVvGIDiS~~~lelAr~n~e~frkr~~~~Gl~~~rVef  236 (438)
T 3uwp_A          159 FDLVAQMIDEIK--MTDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTL  236 (438)
T ss_dssp             HHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHHHCCCSEEEEEECCHHHHHHHHHHHHHHHHHHHHHTBCCCEEEE
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHHHHHHHHhCCCCCCeEE
Confidence            334444444432  2467899999999999999998655556899999999999999763210    001   1236889


Q ss_pred             EEccCCCCCCCC--CccceEEEec
Q 030823          148 VVGDEEFLPLKE--RYACRFFVLA  169 (171)
Q Consensus       148 ~~~D~e~LPf~~--~sfDlV~s~~  169 (171)
                      +++|...+|+++  +.||+|+++.
T Consensus       237 i~GD~~~lp~~d~~~~aDVVf~Nn  260 (438)
T 3uwp_A          237 ERGDFLSEEWRERIANTSVIFVNN  260 (438)
T ss_dssp             EECCTTSHHHHHHHHTCSEEEECC
T ss_pred             EECcccCCccccccCCccEEEEcc
Confidence            999999999865  5899999875

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=99.15  E-value=1.7e-10  Score=90.11  Aligned_cols=91  Identities=11%  Similarity=-0.026  Sum_probs=65.9

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-----CCcEEEEEeCCHHHHHHHHHhhhhhcc---CCCceeEEEc
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-----GIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVG  150 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-----~~~~v~gvD~S~~mL~~a~~~~~~~~~---~~~~~~~~~~  150 (171)
                      ..+.+.+..-..+..+|||+|||+|.++..+.+..     +..+|+++|++++|++.+++.......   ...++.++.+
T Consensus        68 ~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~~~~  147 (227)
T 2pbf_A           68 ALSLKRLINVLKPGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRDKPELLKIDNFKIIHK  147 (227)
T ss_dssp             HHHHHHHTTTSCTTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGSSTTEEEEEC
T ss_pred             HHHHHHHHhhCCCCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHcCccccccCCEEEEEC
Confidence            33444443223456899999999999999998754     345999999999999999875421000   0235788999


Q ss_pred             cCCCCC----CCCCccceEEEec
Q 030823          151 DEEFLP----LKERYACRFFVLA  169 (171)
Q Consensus       151 D~e~LP----f~~~sfDlV~s~~  169 (171)
                      |....+    +++++||+|++.+
T Consensus       148 d~~~~~~~~~~~~~~fD~I~~~~  170 (227)
T 2pbf_A          148 NIYQVNEEEKKELGLFDAIHVGA  170 (227)
T ss_dssp             CGGGCCHHHHHHHCCEEEEEECS
T ss_pred             ChHhcccccCccCCCcCEEEECC
Confidence            988766    6678999999875

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=99.15  E-value=5.8e-11  Score=95.47  Aligned_cols=99  Identities=14%  Similarity=0.044  Sum_probs=70.1

Q ss_pred             CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCc
Q 030823           67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIE  144 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~  144 (171)
                      |+..++++...+..+...|..+ ..+..+|||+|||||.++..+++. ++.++|+++|+|+.|+....+...    ...+
T Consensus        51 yr~w~~~~skla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l~~~a~----~r~n  126 (232)
T 3id6_C           51 YREWNAFRSKLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVRELLLVAQ----RRPN  126 (232)
T ss_dssp             EEECCTTTCHHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHHHHHHH----HCTT
T ss_pred             hhhhchHHHHHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhh----hcCC
Confidence            4455666767777776665432 346789999999999999998763 346799999999999754332211    1236


Q ss_pred             eeEEEccCCCCC---CCCCccceEEEec
Q 030823          145 TCFVVGDEEFLP---LKERYACRFFVLA  169 (171)
Q Consensus       145 ~~~~~~D~e~LP---f~~~sfDlV~s~~  169 (171)
                      +.++++|+...+   ...++||+|++..
T Consensus       127 v~~i~~Da~~~~~~~~~~~~~D~I~~d~  154 (232)
T 3id6_C          127 IFPLLADARFPQSYKSVVENVDVLYVDI  154 (232)
T ss_dssp             EEEEECCTTCGGGTTTTCCCEEEEEECC
T ss_pred             eEEEEcccccchhhhccccceEEEEecC
Confidence            888999987643   1257999999874

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=99.14  E-value=1.7e-10  Score=91.87  Aligned_cols=79  Identities=11%  Similarity=0.080  Sum_probs=62.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cC--C-CceeEEEccCCC-CC--CCCCc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---ND--N-IETCFVVGDEEF-LP--LKERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~---~~--~-~~~~~~~~D~e~-LP--f~~~s  161 (171)
                      +..+|||||||+|.++..++..++...|+|+|+|+.|++.+++......   ..  + .++.++++|+.. +|  +++++
T Consensus        49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~nv~~~~~D~~~~l~~~~~~~~  128 (246)
T 2vdv_E           49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTASKHGFQNINVLRGNAMKFLPNFFEKGQ  128 (246)
T ss_dssp             CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC-CCSTTTTEEEEECCTTSCGGGTSCTTC
T ss_pred             CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccccccCCCcEEEEeccHHHHHHHhccccc
Confidence            4578999999999999999987666799999999999999876432100   00  3 368889999886 77  88899


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      +|.|+.+.
T Consensus       129 ~d~v~~~~  136 (246)
T 2vdv_E          129 LSKMFFCF  136 (246)
T ss_dssp             EEEEEEES
T ss_pred             cCEEEEEC
Confidence            99998763

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=99.14  E-value=2.8e-11  Score=89.86  Aligned_cols=74  Identities=15%  Similarity=0.077  Sum_probs=56.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCC---CCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPL---KERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf---~~~sfDlV~  166 (171)
                      +..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++....   .+.++.++++|... ++.   .+++||+|+
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~--~~v~~vD~~~~~~~~a~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~D~i~  115 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVRR---TGLGARVVALPVEVFLPEAKAQGERFTVAF  115 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHHH---HTCCCEEECSCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCC--CeEEEEeCCHHHHHHHHHHHHH---cCCceEEEeccHHHHHHhhhccCCceEEEE
Confidence            45799999999999999998854  3599999999999999875421   22267788888765 332   134899999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       116 ~~~  118 (171)
T 1ws6_A          116 MAP  118 (171)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            874

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=99.13  E-value=3.4e-10  Score=88.56  Aligned_cols=76  Identities=12%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCCCC-----Cc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPLKE-----RY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf~~-----~s  161 (171)
                      +..+|||||||+|..+..+++.. +..+|+++|+|++|++.+++...   ..+.  ++.++++|... +|..+     ++
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~l~~~~~~~~~~~  134 (221)
T 3u81_A           58 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEINPDCAAITQQMLN---FAGLQDKVTILNGASQDLIPQLKKKYDVDT  134 (221)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH---HHTCGGGEEEEESCHHHHGGGTTTTSCCCC
T ss_pred             CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCChHHHHHHHHHHH---HcCCCCceEEEECCHHHHHHHHHHhcCCCc
Confidence            45799999999999999998753 36799999999999999987542   1232  48889999743 44322     79


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|++.+
T Consensus       135 fD~V~~d~  142 (221)
T 3u81_A          135 LDMVFLDH  142 (221)
T ss_dssp             CSEEEECS
T ss_pred             eEEEEEcC
Confidence            99999865

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=99.13  E-value=2.8e-10  Score=90.07  Aligned_cols=75  Identities=11%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCC---CceeEEEccCCCC-C-CCCCccceE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDN---IETCFVVGDEEFL-P-LKERYACRF  165 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~---~~~~~~~~D~e~L-P-f~~~sfDlV  165 (171)
                      ..+|||||||+|..+..|++.. +.++|+++|+|++|++.|++...   ..+   .++.++++|+..+ + +++++||+|
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~g~~~~~i~~~~gda~~~l~~~~~~~fD~V  133 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFR---EAGYSPSRVRFLLSRPLDVMSRLANDSYQLV  133 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHH---HTTCCGGGEEEECSCHHHHGGGSCTTCEEEE
T ss_pred             CCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCcCcEEEEEcCHHHHHHHhcCCCcCeE
Confidence            3499999999999999998753 36899999999999999987543   222   2588899987543 3 447899999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++.+
T Consensus       134 ~~d~  137 (221)
T 3dr5_A          134 FGQV  137 (221)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9864

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=99.13  E-value=1.8e-10  Score=98.28  Aligned_cols=77  Identities=9%  Similarity=-0.032  Sum_probs=61.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc-CCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~-~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+++.++..+|+++|+|+.|++.+++....... ...++.++.+|... ++++++||+|+++
T Consensus       222 ~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~ngl~~~~~v~~~~~D~~~-~~~~~~fD~Ii~n  299 (375)
T 4dcm_A          222 LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALS-GVEPFRFNAVLCN  299 (375)
T ss_dssp             CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCGGGGGGEEEEECSTTT-TCCTTCEEEEEEC
T ss_pred             CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHcCCCcCceEEEEechhhc-cCCCCCeeEEEEC
Confidence            34799999999999999999877778999999999999999875431000 11247789999877 6778999999986

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=99.12  E-value=2.5e-10  Score=93.70  Aligned_cols=73  Identities=15%  Similarity=0.024  Sum_probs=59.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+++.. ..+|+|+|+|++|++.+++...   ..+  .++.++++|.+.+|   ++||+|++
T Consensus        89 ~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~---~~fD~v~~  161 (318)
T 2fk8_A           89 KPGMTLLDIGCGWGTTMRRAVERF-DVNVIGLTLSKNQHARCEQVLA---SIDTNRSRQVLLQGWEDFA---EPVDRIVS  161 (318)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH---TSCCSSCEEEEESCGGGCC---CCCSEEEE
T ss_pred             CCcCEEEEEcccchHHHHHHHHHC-CCEEEEEECCHHHHHHHHHHHH---hcCCCCceEEEECChHHCC---CCcCEEEE
Confidence            456799999999999999998753 3599999999999999987542   223  24788999988876   79999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       162 ~~  163 (318)
T 2fk8_A          162 IE  163 (318)
T ss_dssp             ES
T ss_pred             eC
Confidence            74

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=99.12  E-value=7.1e-11  Score=94.31  Aligned_cols=72  Identities=17%  Similarity=0.020  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhc----CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC---CCCCC-cc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGR----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL---PLKER-YA  162 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~----~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L---Pf~~~-sf  162 (171)
                      +..+|||||||+|..+..|++.    ++..+|+++|+|++|++.|+.       ...++.++++|...+   |+.++ +|
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~~-------~~~~v~~~~gD~~~~~~l~~~~~~~f  153 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPAS-------DMENITLHQGDCSDLTTFEHLREMAH  153 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCGG-------GCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             CCCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHhc-------cCCceEEEECcchhHHHHHhhccCCC
Confidence            3479999999999999999875    456899999999999988752       123588899999874   65444 79


Q ss_pred             ceEEEec
Q 030823          163 CRFFVLA  169 (171)
Q Consensus       163 DlV~s~~  169 (171)
                      |+|++.+
T Consensus       154 D~I~~d~  160 (236)
T 2bm8_A          154 PLIFIDN  160 (236)
T ss_dssp             SEEEEES
T ss_pred             CEEEECC
Confidence            9999865

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=99.12  E-value=1.5e-10  Score=93.23  Aligned_cols=74  Identities=15%  Similarity=0.067  Sum_probs=58.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..+++.+  .+|+++|+|+.|++.+++...   ..+..+.++.+|... ++++++||+|+++.
T Consensus       119 ~~~~~VLDiGcG~G~l~~~la~~g--~~v~gvDi~~~~v~~a~~n~~---~~~~~v~~~~~d~~~-~~~~~~fD~Vv~n~  192 (254)
T 2nxc_A          119 RPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAK---RNGVRPRFLEGSLEA-ALPFGPFDLLVANL  192 (254)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHH---HTTCCCEEEESCHHH-HGGGCCEEEEEEEC
T ss_pred             CCCCEEEEecCCCcHHHHHHHHhC--CeEEEEECCHHHHHHHHHHHH---HcCCcEEEEECChhh-cCcCCCCCEEEECC
Confidence            466899999999999999998854  399999999999999987542   233336778888665 25578999999975

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=99.12  E-value=3.3e-10  Score=87.70  Aligned_cols=89  Identities=10%  Similarity=-0.007  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~  154 (171)
                      +...+.+.+.  ..+..+|||+|||+|.++..+.+.. +..+|+++|+|++|++.+++....   .+ .++.++.+|...
T Consensus        65 ~~~~~~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~v~~~~~d~~~  139 (215)
T 2yxe_A           65 MVGMMCELLD--LKPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRK---LGYDNVIVIVGDGTL  139 (215)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHH---HTCTTEEEEESCGGG
T ss_pred             HHHHHHHhhC--CCCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH---cCCCCeEEEECCccc
Confidence            3344444432  2456799999999999999998754 347999999999999999875421   12 247788888754


Q ss_pred             CCCCCCccceEEEecc
Q 030823          155 LPLKERYACRFFVLAL  170 (171)
Q Consensus       155 LPf~~~sfDlV~s~~~  170 (171)
                      ....+++||+|+++..
T Consensus       140 ~~~~~~~fD~v~~~~~  155 (215)
T 2yxe_A          140 GYEPLAPYDRIYTTAA  155 (215)
T ss_dssp             CCGGGCCEEEEEESSB
T ss_pred             CCCCCCCeeEEEECCc
Confidence            3223789999998753

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=99.12  E-value=3e-10  Score=94.77  Aligned_cols=74  Identities=14%  Similarity=0.110  Sum_probs=61.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+++. +..+|+++|+| +|++.+++...   ..+.  ++.++.+|.+.+++++++||+|++.
T Consensus        38 ~~~~VLDiGcGtG~ls~~la~~-g~~~v~~vD~s-~~~~~a~~~~~---~~~~~~~i~~~~~d~~~~~~~~~~~D~Ivs~  112 (328)
T 1g6q_1           38 KDKIVLDVGCGTGILSMFAAKH-GAKHVIGVDMS-SIIEMAKELVE---LNGFSDKITLLRGKLEDVHLPFPKVDIIISE  112 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-CCSEEEEEESS-THHHHHHHHHH---HTTCTTTEEEEESCTTTSCCSSSCEEEEEEC
T ss_pred             CCCEEEEecCccHHHHHHHHHC-CCCEEEEEChH-HHHHHHHHHHH---HcCCCCCEEEEECchhhccCCCCcccEEEEe
Confidence            4579999999999999999875 34699999999 69999887542   1222  4788999999999988999999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       113 ~  113 (328)
T 1g6q_1          113 W  113 (328)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=99.11  E-value=1.1e-10  Score=98.05  Aligned_cols=94  Identities=15%  Similarity=0.040  Sum_probs=73.4

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCF  147 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~  147 (171)
                      ..++...++..|...+. + .+...|||+|||+|.++..++... +..+|+|+|++++|++.|++...   ..++ ++.+
T Consensus       184 ~a~l~~~la~~l~~~~~-~-~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~---~~g~~~i~~  258 (354)
T 3tma_A          184 RGSLTPVLAQALLRLAD-A-RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAAL---ASGLSWIRF  258 (354)
T ss_dssp             SCSCCHHHHHHHHHHTT-C-CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHH---HTTCTTCEE
T ss_pred             CCCcCHHHHHHHHHHhC-C-CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHH---HcCCCceEE
Confidence            34555666666655432 2 355789999999999999998754 56799999999999999987543   2333 5889


Q ss_pred             EEccCCCCCCCCCccceEEEe
Q 030823          148 VVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +++|...+|.+.++||+|+++
T Consensus       259 ~~~D~~~~~~~~~~~D~Ii~n  279 (354)
T 3tma_A          259 LRADARHLPRFFPEVDRILAN  279 (354)
T ss_dssp             EECCGGGGGGTCCCCSEEEEC
T ss_pred             EeCChhhCccccCCCCEEEEC
Confidence            999999999888889999995

>3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae}

Probab=99.11  E-value=2.1e-10  Score=92.23  Aligned_cols=78  Identities=6%  Similarity=-0.093  Sum_probs=63.0

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+..+|||+|||+|.++..++..++..+|+++|+++.+++.|++...   ..++  .+.+.++|....+.+++.||+|+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~---~~gl~~~I~~~~gD~l~~~~~~~~~D~Iv   95 (230)
T 3lec_A           19 VPKGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVS---EHGLTSKIDVRLANGLSAFEEADNIDTIT   95 (230)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHH---HTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECchhhccccccccCEEE
Confidence            346689999999999999999987777899999999999999987542   2333  48889999877665555899988


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +..
T Consensus        96 iaG   98 (230)
T 3lec_A           96 ICG   98 (230)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            654

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=99.11  E-value=2.1e-10  Score=92.34  Aligned_cols=76  Identities=12%  Similarity=0.027  Sum_probs=54.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccC-C---------------------------
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND-N---------------------------  142 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~-~---------------------------  142 (171)
                      +..+|||||||+|.++..+... ...+|+|+|+|+.|++.+++....  .. .                           
T Consensus        55 ~g~~vLDiGCG~G~~~~~~~~~-~~~~v~g~D~s~~~l~~a~~~~~~--~~~~~d~s~~~~~~~~~~~~~~~~~~~~~~~  131 (263)
T 2a14_A           55 QGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWLKK--EPGAYDWTPAVKFACELEGNSGRWEEKEEKL  131 (263)
T ss_dssp             CEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHHHT--CTTCCCCHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred             CCceEEEeCCCccHHHHHHHHh-hhcceeeccccHHHHHHHHHHHhc--CCCcccchHHHHHHHhcCCCCcchhhHHHHH
Confidence            4578999999999887666543 235899999999999999864321  11 0                           


Q ss_pred             -Ccee-EEEccCCC-CCCC---CCccceEEEec
Q 030823          143 -IETC-FVVGDEEF-LPLK---ERYACRFFVLA  169 (171)
Q Consensus       143 -~~~~-~~~~D~e~-LPf~---~~sfDlV~s~~  169 (171)
                       ..+. ++++|... .|++   +++||+|+++.
T Consensus       132 ~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~  164 (263)
T 2a14_A          132 RAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLL  164 (263)
T ss_dssp             HHHEEEEEECCTTSSSTTTTCCCCCEEEEEEES
T ss_pred             HhhhheEEeccccCCCCCCccccCCCCEeeehH
Confidence             0122 77889877 3543   67999999975

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=99.11  E-value=2.5e-10  Score=85.67  Aligned_cols=91  Identities=15%  Similarity=0.036  Sum_probs=66.0

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEE
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVV  149 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~  149 (171)
                      +..+++...+.+.+.  ..+..+|||+|||+|.++..+.+.+  .+|+++|+|++|++.+++...   ..+  .++.++.
T Consensus        16 ~~~~~~~~~~~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~--~~v~~~D~~~~~~~~a~~~~~---~~~~~~~~~~~~   88 (192)
T 1l3i_A           16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGRV--RRVYAIDRNPEAISTTEMNLQ---RHGLGDNVTLME   88 (192)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTTS--SEEEEEESCHHHHHHHHHHHH---HTTCCTTEEEEE
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEECCCCCHHHHHHHHhc--CEEEEEECCHHHHHHHHHHHH---HcCCCcceEEEe
Confidence            333444455554443  2456799999999999999998855  799999999999999987542   122  2577788


Q ss_pred             ccCCCCCCCC-CccceEEEecc
Q 030823          150 GDEEFLPLKE-RYACRFFVLAL  170 (171)
Q Consensus       150 ~D~e~LPf~~-~sfDlV~s~~~  170 (171)
                      +|... ++++ ++||+|+++..
T Consensus        89 ~d~~~-~~~~~~~~D~v~~~~~  109 (192)
T 1l3i_A           89 GDAPE-ALCKIPDIDIAVVGGS  109 (192)
T ss_dssp             SCHHH-HHTTSCCEEEEEESCC
T ss_pred             cCHHH-hcccCCCCCEEEECCc
Confidence            88765 3333 68999998753

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=99.10  E-value=3e-10  Score=90.27  Aligned_cols=93  Identities=11%  Similarity=-0.017  Sum_probs=68.6

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-c-eeE
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E-TCF  147 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~-~~~  147 (171)
                      ..+....+..+...+.  ..+..+|||+|||+|.++..+++. ++..+|+++|+|++|++.|++....   .+. + +.+
T Consensus        75 ~~~~~~~~~~i~~~~~--~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~---~~~~~~v~~  149 (255)
T 3mb5_A           75 QIVHPKDAALIVAYAG--ISPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKW---AGFDDRVTI  149 (255)
T ss_dssp             CCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHH---HTCTTTEEE
T ss_pred             ccccHhHHHHHHHhhC--CCCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHH---cCCCCceEE
Confidence            3334444445544432  245689999999999999999886 5678999999999999999875421   222 3 788


Q ss_pred             EEccCCCCCCCCCccceEEEec
Q 030823          148 VVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +.+|.... +++++||+|+++.
T Consensus       150 ~~~d~~~~-~~~~~~D~v~~~~  170 (255)
T 3mb5_A          150 KLKDIYEG-IEEENVDHVILDL  170 (255)
T ss_dssp             ECSCGGGC-CCCCSEEEEEECS
T ss_pred             EECchhhc-cCCCCcCEEEECC
Confidence            88998754 7788999999853

>3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str}

Probab=99.10  E-value=2.4e-10  Score=92.68  Aligned_cols=78  Identities=5%  Similarity=-0.066  Sum_probs=62.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+..+|||||||+|.++..++..++..+|+++|+++.+++.|++...   ..++  .+.+..+|....+.+++.||+|+
T Consensus        19 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~---~~gl~~~I~v~~gD~l~~~~~~~~~D~Iv   95 (244)
T 3gnl_A           19 ITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVR---SSGLTEQIDVRKGNGLAVIEKKDAIDTIV   95 (244)
T ss_dssp             CCSSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH---HTTCTTTEEEEECSGGGGCCGGGCCCEEE
T ss_pred             CCCCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCceEEEEecchhhccCccccccEEE
Confidence            356689999999999999999987777799999999999999987542   2343  47889999776655444699988


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +..
T Consensus        96 iag   98 (244)
T 3gnl_A           96 IAG   98 (244)
T ss_dssp             EEE
T ss_pred             EeC
Confidence            653

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=99.10  E-value=3.6e-10  Score=89.21  Aligned_cols=87  Identities=11%  Similarity=0.088  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      .++..+.+.+.  ..+..+|||+|||+|.++..+.+..+ .+|+++|++++|++.+++...   ..+. ++.++.+|. .
T Consensus        78 ~~~~~~~~~l~--~~~~~~vLdiG~G~G~~~~~la~~~~-~~v~~vD~~~~~~~~a~~~~~---~~~~~~v~~~~~d~-~  150 (235)
T 1jg1_A           78 HMVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIVK-TDVYTIERIPELVEFAKRNLE---RAGVKNVHVILGDG-S  150 (235)
T ss_dssp             HHHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHHC-SCEEEEESCHHHHHHHHHHHH---HTTCCSEEEEESCG-G
T ss_pred             HHHHHHHHhcC--CCCCCEEEEEeCCcCHHHHHHHHHhC-CEEEEEeCCHHHHHHHHHHHH---HcCCCCcEEEECCc-c
Confidence            34445554442  24567999999999999999987555 799999999999999987542   1232 477888887 5


Q ss_pred             CCCCCC-ccceEEEec
Q 030823          155 LPLKER-YACRFFVLA  169 (171)
Q Consensus       155 LPf~~~-sfDlV~s~~  169 (171)
                      .+++++ .||+|+++.
T Consensus       151 ~~~~~~~~fD~Ii~~~  166 (235)
T 1jg1_A          151 KGFPPKAPYDVIIVTA  166 (235)
T ss_dssp             GCCGGGCCEEEEEECS
T ss_pred             cCCCCCCCccEEEECC
Confidence            566555 499999875

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=99.10  E-value=3e-10  Score=92.03  Aligned_cols=75  Identities=12%  Similarity=-0.017  Sum_probs=61.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccC-C-CceeEEEccCCCCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHND-N-IETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~-~-~~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .+..+|||+|||+|.++..+++. ++..+|+++|+|++|++.+++...   .. + .++.++++|.+. ++++++||+|+
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~g~~~v~~~~~d~~~-~~~~~~fD~Vi  184 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLS---EFYDIGNVRTSRSDIAD-FISDQMYDAVI  184 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHH---TTSCCTTEEEECSCTTT-CCCSCCEEEEE
T ss_pred             CCcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHH---hcCCCCcEEEEECchhc-cCcCCCccEEE
Confidence            45679999999999999999875 456899999999999999987542   12 3 357889999887 77788999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ++
T Consensus       185 ~~  186 (275)
T 1yb2_A          185 AD  186 (275)
T ss_dssp             EC
T ss_pred             Ec
Confidence            84

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=99.09  E-value=3.9e-10  Score=92.52  Aligned_cols=72  Identities=11%  Similarity=0.057  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCcc---ceE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYA---CRF  165 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sf---DlV  165 (171)
                      +..+|||+|||+|.++..++.. +..+|+++|+|++|++.|++...   ..+.  .+.++++|... +++ ++|   |+|
T Consensus       123 ~~~~vLDlG~GsG~~~~~la~~-~~~~v~~vDis~~al~~A~~n~~---~~~l~~~v~~~~~D~~~-~~~-~~f~~~D~I  196 (284)
T 1nv8_A          123 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAE---RHGVSDRFFVRKGEFLE-PFK-EKFASIEMI  196 (284)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHH---HTTCTTSEEEEESSTTG-GGG-GGTTTCCEE
T ss_pred             CCCEEEEEeCchhHHHHHHHHC-CCCEEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECcchh-hcc-cccCCCCEE
Confidence            4578999999999999999876 67899999999999999987542   2333  38889999876 333 589   999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      ++|
T Consensus       197 vsn  199 (284)
T 1nv8_A          197 LSN  199 (284)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            997

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=99.09  E-value=5.3e-10  Score=89.98  Aligned_cols=93  Identities=14%  Similarity=0.010  Sum_probs=68.7

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCCceeEEEccC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDE  152 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~-~~~~~~~~~~~~D~  152 (171)
                      ...+..++..+.  ..+..+|||+|||+|.++..+++. ++..+|+++|+|++|++.+++..... .....++.++++|.
T Consensus        85 ~~~~~~i~~~~~--~~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~g~~~~~v~~~~~d~  162 (280)
T 1i9g_A           85 PKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNWRLVVSDL  162 (280)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTEEEECSCG
T ss_pred             HHHHHHHHHHcC--CCCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhcCCCCCcEEEEECch
Confidence            334444444432  245679999999999999999874 34679999999999999998754210 00023578899999


Q ss_pred             CCCCCCCCccceEEEec
Q 030823          153 EFLPLKERYACRFFVLA  169 (171)
Q Consensus       153 e~LPf~~~sfDlV~s~~  169 (171)
                      ...++++++||+|+++.
T Consensus       163 ~~~~~~~~~~D~v~~~~  179 (280)
T 1i9g_A          163 ADSELPDGSVDRAVLDM  179 (280)
T ss_dssp             GGCCCCTTCEEEEEEES
T ss_pred             HhcCCCCCceeEEEECC
Confidence            99998889999999864

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=99.09  E-value=8.5e-10  Score=95.46  Aligned_cols=74  Identities=8%  Similarity=0.025  Sum_probs=61.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC----CCCCCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF----LPLKERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~----LPf~~~sfDl  164 (171)
                      .+..+|||+|||+|.++..|++.  ..+|+|+|+|++|++.|++...   ..+. ++.|+++|.+.    +|+++++||+
T Consensus       285 ~~~~~VLDlgcG~G~~~~~la~~--~~~V~gvD~s~~al~~A~~n~~---~~~~~~v~f~~~d~~~~l~~~~~~~~~fD~  359 (433)
T 1uwv_A          285 QPEDRVLDLFCGMGNFTLPLATQ--AASVVGVEGVPALVEKGQQNAR---LNGLQNVTFYHENLEEDVTKQPWAKNGFDK  359 (433)
T ss_dssp             CTTCEEEEESCTTTTTHHHHHTT--SSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEECCTTSCCSSSGGGTTCCSE
T ss_pred             CCCCEEEECCCCCCHHHHHHHhh--CCEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEECCHHHHhhhhhhhcCCCCE
Confidence            34579999999999999999984  5799999999999999987542   2333 68899999877    4677789999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+++
T Consensus       360 Vv~d  363 (433)
T 1uwv_A          360 VLLD  363 (433)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9985

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=99.09  E-value=1.6e-10  Score=90.62  Aligned_cols=92  Identities=14%  Similarity=0.061  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC------CcEEEEEeCCHHHHHHHHHhhhhhcc---CCCceeE
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG------IEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCF  147 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~------~~~v~gvD~S~~mL~~a~~~~~~~~~---~~~~~~~  147 (171)
                      +...+.+.+.....+..+|||+|||+|.++..+++..+      ..+|+++|++++|++.+++.......   ...++.+
T Consensus        70 ~~~~~~~~l~~~~~~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~v~~  149 (227)
T 1r18_A           70 MHAFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLI  149 (227)
T ss_dssp             HHHHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEE
T ss_pred             HHHHHHHHHHhhCCCCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcCccccCCCceEE
Confidence            33444454432235668999999999999999876432      25999999999999999875421000   0125778


Q ss_pred             EEccCCCCCCCC-CccceEEEec
Q 030823          148 VVGDEEFLPLKE-RYACRFFVLA  169 (171)
Q Consensus       148 ~~~D~e~LPf~~-~sfDlV~s~~  169 (171)
                      +++|... ++++ ++||+|++.+
T Consensus       150 ~~~d~~~-~~~~~~~fD~I~~~~  171 (227)
T 1r18_A          150 VEGDGRK-GYPPNAPYNAIHVGA  171 (227)
T ss_dssp             EESCGGG-CCGGGCSEEEEEECS
T ss_pred             EECCccc-CCCcCCCccEEEECC
Confidence            8899876 5555 8999999875

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=99.08  E-value=2.5e-10  Score=92.29  Aligned_cols=94  Identities=13%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      .++++-.....+++.+++.+.  ..+..+|||+|||+|.++..|.+. +..+|+++|+++.|++.+++.      ...++
T Consensus         8 ~~GQnfl~d~~i~~~iv~~~~--~~~~~~VLDiG~G~G~lt~~L~~~-~~~~v~avEid~~~~~~~~~~------~~~~v   78 (249)
T 3ftd_A            8 SFGQHLLVSEGVLKKIAEELN--IEEGNTVVEVGGGTGNLTKVLLQH-PLKKLYVIELDREMVENLKSI------GDERL   78 (249)
T ss_dssp             CCCSSCEECHHHHHHHHHHTT--CCTTCEEEEEESCHHHHHHHHTTS-CCSEEEEECCCHHHHHHHTTS------CCTTE
T ss_pred             cccccccCCHHHHHHHHHhcC--CCCcCEEEEEcCchHHHHHHHHHc-CCCeEEEEECCHHHHHHHHhc------cCCCe
Confidence            456654444566777766553  235679999999999999999985 247999999999999999752      23467


Q ss_pred             eEEEccCCCCCCCCCc-cceEEEe
Q 030823          146 CFVVGDEEFLPLKERY-ACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~s-fDlV~s~  168 (171)
                      .++.+|...+|+++.. ...|++|
T Consensus        79 ~~i~~D~~~~~~~~~~~~~~vv~N  102 (249)
T 3ftd_A           79 EVINEDASKFPFCSLGKELKVVGN  102 (249)
T ss_dssp             EEECSCTTTCCGGGSCSSEEEEEE
T ss_pred             EEEEcchhhCChhHccCCcEEEEE
Confidence            8899999999987532 2255554

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=99.08  E-value=2.7e-10  Score=96.83  Aligned_cols=74  Identities=14%  Similarity=0.069  Sum_probs=61.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+++.+ ..+|+|+|+| +|++.+++...   ..+.  .+.++++|.+.++++ ++||+|++
T Consensus        62 ~~~~~VLDlGcGtG~ls~~la~~g-~~~V~gvD~s-~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~-~~~D~Iv~  135 (376)
T 3r0q_C           62 FEGKTVLDVGTGSGILAIWSAQAG-ARKVYAVEAT-KMADHARALVK---ANNLDHIVEVIEGSVEDISLP-EKVDVIIS  135 (376)
T ss_dssp             TTTCEEEEESCTTTHHHHHHHHTT-CSEEEEEESS-TTHHHHHHHHH---HTTCTTTEEEEESCGGGCCCS-SCEEEEEE
T ss_pred             CCCCEEEEeccCcCHHHHHHHhcC-CCEEEEEccH-HHHHHHHHHHH---HcCCCCeEEEEECchhhcCcC-CcceEEEE
Confidence            356899999999999999998863 3599999999 99999987543   2333  388999999999986 99999999


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       136 ~~  137 (376)
T 3r0q_C          136 EW  137 (376)
T ss_dssp             CC
T ss_pred             cC
Confidence            54

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=99.07  E-value=3.5e-11  Score=102.68  Aligned_cols=75  Identities=11%  Similarity=0.056  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..|.+.+  .+|+|+|+|++|++.+++..    .......+...+.+.+|+++++||+|+++.
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g--~~v~gvD~s~~~~~~a~~~~----~~~~~~~~~~~~~~~l~~~~~~fD~I~~~~  179 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAG--VRHLGFEPSSGVAAKAREKG----IRVRTDFFEKATADDVRRTEGPANVIYAAN  179 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTT--CEEEEECCCHHHHHHHHTTT----CCEECSCCSHHHHHHHHHHHCCEEEEEEES
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcC--CcEEEECCCHHHHHHHHHcC----CCcceeeechhhHhhcccCCCCEEEEEECC
Confidence            356799999999999999998853  59999999999999997621    011112233466777888899999999986


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       180 v  180 (416)
T 4e2x_A          180 T  180 (416)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=99.07  E-value=1.3e-09  Score=84.37  Aligned_cols=75  Identities=13%  Similarity=0.141  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCCCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      +..+|||+|||+|..+..+++..+ ..+|+++|+|++|++.+++....   .+.  .+.++++|... +|..++ ||+|+
T Consensus        56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~---~~~~~~v~~~~~d~~~~~~~~~~-fD~v~  131 (210)
T 3c3p_A           56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHD---NGLIDRVELQVGDPLGIAAGQRD-IDILF  131 (210)
T ss_dssp             CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHH---HSGGGGEEEEESCHHHHHTTCCS-EEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH---CCCCceEEEEEecHHHHhccCCC-CCEEE
Confidence            457999999999999999987544 67999999999999999875421   222  47788998754 465567 99999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +.+
T Consensus       132 ~~~  134 (210)
T 3c3p_A          132 MDC  134 (210)
T ss_dssp             EET
T ss_pred             EcC
Confidence            864

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=99.07  E-value=8.3e-10  Score=86.34  Aligned_cols=76  Identities=14%  Similarity=0.027  Sum_probs=59.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC---CCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP---f~~~sfDlV  165 (171)
                      .+..+|||+|||+|.++..+++. ++.++|+++|+|++|++.+.+...    ...++.++++|.+..+   ..+++||+|
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~~----~~~~v~~~~~d~~~~~~~~~~~~~~D~v  147 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE----ERRNIVPILGDATKPEEYRALVPKVDVI  147 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS----SCTTEEEEECCTTCGGGGTTTCCCEEEE
T ss_pred             CCCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHHh----ccCCCEEEEccCCCcchhhcccCCceEE
Confidence            35679999999999999999865 345799999999999998876432    2246888999988732   224689999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++..
T Consensus       148 ~~~~  151 (227)
T 1g8a_A          148 FEDV  151 (227)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9764

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=99.07  E-value=4.3e-10  Score=89.98  Aligned_cols=76  Identities=11%  Similarity=-0.014  Sum_probs=60.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCCC--CCccce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPLK--ERYACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf~--~~sfDl  164 (171)
                      +..+|||||||+|..+..+++..+ ..+|+++|+|++|++.+++...   ..+.  ++.++++|... +|..  +++||+
T Consensus        63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~g~~~~v~~~~~d~~~~l~~~~~~~~fD~  139 (248)
T 3tfw_A           63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQ---LAGVDQRVTLREGPALQSLESLGECPAFDL  139 (248)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHH---HTTCTTTEEEEESCHHHHHHTCCSCCCCSE
T ss_pred             CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHhcCCCCCeEE
Confidence            458999999999999999988654 6899999999999999987543   2232  58889999765 4433  359999


Q ss_pred             EEEec
Q 030823          165 FFVLA  169 (171)
Q Consensus       165 V~s~~  169 (171)
                      |++.+
T Consensus       140 V~~d~  144 (248)
T 3tfw_A          140 IFIDA  144 (248)
T ss_dssp             EEECS
T ss_pred             EEECC
Confidence            99754

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=99.05  E-value=1.9e-10  Score=96.32  Aligned_cols=85  Identities=12%  Similarity=0.030  Sum_probs=63.7

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf  157 (171)
                      .+.+.+.+.  ..+..+|||+|||+|.++..+.+.++..+|+++|+|+.|++.+++...   ..+....++.+|....+ 
T Consensus       185 ~~~ll~~l~--~~~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~---~~~~~~~~~~~d~~~~~-  258 (343)
T 2pjd_A          185 SQLLLSTLT--PHTKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLA---ANGVEGEVFASNVFSEV-  258 (343)
T ss_dssp             HHHHHHHSC--TTCCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHH---HTTCCCEEEECSTTTTC-
T ss_pred             HHHHHHhcC--cCCCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCEEEEccccccc-
Confidence            344444432  124578999999999999999887666699999999999999987542   23445566778876543 


Q ss_pred             CCCccceEEEec
Q 030823          158 KERYACRFFVLA  169 (171)
Q Consensus       158 ~~~sfDlV~s~~  169 (171)
                       +++||+|+++.
T Consensus       259 -~~~fD~Iv~~~  269 (343)
T 2pjd_A          259 -KGRFDMIISNP  269 (343)
T ss_dssp             -CSCEEEEEECC
T ss_pred             -cCCeeEEEECC
Confidence             78999999964

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=99.05  E-value=2.8e-10  Score=90.67  Aligned_cols=45  Identities=13%  Similarity=-0.054  Sum_probs=38.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhh
Q 030823           91 TFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      +..+|||+|||+|.++..+...  .+..+|+|+|+|+.|++.|++..
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~   97 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNL   97 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHH
Confidence            4578999999999999999875  34569999999999999998643

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=99.05  E-value=8.2e-10  Score=91.83  Aligned_cols=94  Identities=14%  Similarity=0.041  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhc------c---CCC
Q 030823           74 VDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAH------N---DNI  143 (171)
Q Consensus        74 ~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~------~---~~~  143 (171)
                      +......+++.+.  ..+..+|||+|||+|.++..+++. ++..+|+++|++++|++.|++......      .   ...
T Consensus        90 ~~~~~~~~l~~l~--~~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~~~~~ln~~~~~~~  167 (336)
T 2b25_A           90 FPKDINMILSMMD--INPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSHVEEWPD  167 (336)
T ss_dssp             CHHHHHHHHHHHT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTCSSCCCC
T ss_pred             CHHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhhcccccccccccCC
Confidence            3333444554442  245689999999999999999875 455899999999999999987542100      0   013


Q ss_pred             ceeEEEccCCCC--CCCCCccceEEEec
Q 030823          144 ETCFVVGDEEFL--PLKERYACRFFVLA  169 (171)
Q Consensus       144 ~~~~~~~D~e~L--Pf~~~sfDlV~s~~  169 (171)
                      ++.++++|.+.+  ++++++||+|+++.
T Consensus       168 ~v~~~~~d~~~~~~~~~~~~fD~V~~~~  195 (336)
T 2b25_A          168 NVDFIHKDISGATEDIKSLTFDAVALDM  195 (336)
T ss_dssp             CEEEEESCTTCCC-------EEEEEECS
T ss_pred             ceEEEECChHHcccccCCCCeeEEEECC
Confidence            588899999877  67788999999864

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=99.05  E-value=6.6e-10  Score=87.38  Aligned_cols=92  Identities=12%  Similarity=0.020  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVG  150 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~  150 (171)
                      +...++..+...+. . .+..+|||+|||+|.++..+++..+..+|+++|+|++|++.+++...   ..+.  ++.++.+
T Consensus        38 ~~~~~~~~l~~~~~-~-~~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~v~~~~~  112 (233)
T 2gpy_A           38 MDLLGMESLLHLLK-M-AAPARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVK---ALGLESRIELLFG  112 (233)
T ss_dssp             CCHHHHHHHHHHHH-H-HCCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHH---HTTCTTTEEEECS
T ss_pred             cCHHHHHHHHHHHh-c-cCCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEC
Confidence            34444444444332 2 34579999999999999999886556899999999999999987542   1232  4778889


Q ss_pred             cCCCC-CCC--CCccceEEEec
Q 030823          151 DEEFL-PLK--ERYACRFFVLA  169 (171)
Q Consensus       151 D~e~L-Pf~--~~sfDlV~s~~  169 (171)
                      |.... |..  +++||+|++.+
T Consensus       113 d~~~~~~~~~~~~~fD~I~~~~  134 (233)
T 2gpy_A          113 DALQLGEKLELYPLFDVLFIDA  134 (233)
T ss_dssp             CGGGSHHHHTTSCCEEEEEEEG
T ss_pred             CHHHHHHhcccCCCccEEEECC
Confidence            88764 543  68999999875

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=99.05  E-value=1.7e-09  Score=90.92  Aligned_cols=73  Identities=14%  Similarity=0.085  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||||||+|.++..+++. +..+|+++|+|+ |+..+++...   ..+  .++.++.+|.+.++++ ++||+|++.
T Consensus        50 ~~~~VLDiGcGtG~ls~~la~~-g~~~V~~vD~s~-~~~~a~~~~~---~~~l~~~v~~~~~d~~~~~~~-~~~D~Ivs~  123 (348)
T 2y1w_A           50 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVK---SNNLTDRIVVIPGKVEEVSLP-EQVDIIISE  123 (348)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHT-TCSEEEEEECST-HHHHHHHHHH---HTTCTTTEEEEESCTTTCCCS-SCEEEEEEC
T ss_pred             CcCEEEEcCCCccHHHHHHHhC-CCCEEEEECCHH-HHHHHHHHHH---HcCCCCcEEEEEcchhhCCCC-CceeEEEEe
Confidence            5689999999999999999875 346999999995 9988876542   123  3588899999999875 689999997


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       124 ~  124 (348)
T 2y1w_A          124 P  124 (348)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A*

Probab=99.04  E-value=7.7e-10  Score=88.62  Aligned_cols=77  Identities=9%  Similarity=0.006  Sum_probs=60.5

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccC-CCCCCCCCccceE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDE-EFLPLKERYACRF  165 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~-e~LPf~~~sfDlV  165 (171)
                      ..+..+|||+|||+|.++..++..++..+|+++|+++.+++.|++...   ..++  .+.+..+|. +.+|. ++.||+|
T Consensus        13 v~~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~---~~gl~~~i~~~~~d~l~~l~~-~~~~D~I   88 (225)
T 3kr9_A           13 VSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVE---AHGLKEKIQVRLANGLAAFEE-TDQVSVI   88 (225)
T ss_dssp             SCTTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHH---HTTCTTTEEEEECSGGGGCCG-GGCCCEE
T ss_pred             CCCCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCceEEEEECchhhhccc-CcCCCEE
Confidence            346689999999999999999987777899999999999999987542   2343  478888997 45553 2379999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +...
T Consensus        89 viaG   92 (225)
T 3kr9_A           89 TIAG   92 (225)
T ss_dssp             EEEE
T ss_pred             EEcC
Confidence            8754

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=99.04  E-value=3.8e-11  Score=98.61  Aligned_cols=74  Identities=7%  Similarity=-0.136  Sum_probs=54.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEE--EccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV--VGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~--~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+++.   ++|+|+|+|+ |+..+++........+.++.++  ++|++.+|  +++||+|+|
T Consensus        81 ~~g~~VLDlGcGtG~~s~~la~~---~~V~gVD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~Vvs  154 (276)
T 2wa2_A           81 ELKGTVVDLGCGRGSWSYYAASQ---PNVREVKAYT-LGTSGHEKPRLVETFGWNLITFKSKVDVTKME--PFQADTVLC  154 (276)
T ss_dssp             CCCEEEEEESCTTCHHHHHHHTS---TTEEEEEEEC-CCCTTSCCCCCCCCTTGGGEEEECSCCGGGCC--CCCCSEEEE
T ss_pred             CCCCEEEEeccCCCHHHHHHHHc---CCEEEEECch-hhhhhhhchhhhhhcCCCeEEEeccCcHhhCC--CCCcCEEEE
Confidence            46689999999999999999885   6999999999 7544432110000111257788  88988877  789999999


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       155 d~  156 (276)
T 2wa2_A          155 DI  156 (276)
T ss_dssp             CC
T ss_pred             CC
Confidence            63

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=99.04  E-value=3.7e-10  Score=88.01  Aligned_cols=76  Identities=11%  Similarity=-0.056  Sum_probs=58.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCCCC-----Cc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPLKE-----RY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf~~-----~s  161 (171)
                      +..+|||+|||+|..+..+++..+ ..+|+++|+|++|++.+++...   ..+.  .+.++++|... +|..+     ++
T Consensus        64 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~~  140 (225)
T 3tr6_A           64 QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWE---KAGLSDKIGLRLSPAKDTLAELIHAGQAWQ  140 (225)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEESCHHHHHHHHHTTTCTTC
T ss_pred             CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHH---HCCCCCceEEEeCCHHHHHHHhhhccCCCC
Confidence            457999999999999999987644 6899999999999999987543   2333  38889998743 33212     89


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|++.+
T Consensus       141 fD~v~~~~  148 (225)
T 3tr6_A          141 YDLIYIDA  148 (225)
T ss_dssp             EEEEEECS
T ss_pred             ccEEEECC
Confidence            99999754

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=99.03  E-value=5.1e-11  Score=97.25  Aligned_cols=74  Identities=8%  Similarity=-0.085  Sum_probs=53.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEE--EccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV--VGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~--~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+..+|||||||+|.++..+++.   ++|+|+|+|+ |+..+++........+.++.++  ++|+..+|  +++||+|+
T Consensus        72 ~~~g~~VLDlGcGtG~~s~~la~~---~~V~gvD~s~-m~~~a~~~~~~~~~~~~~v~~~~~~~D~~~l~--~~~fD~V~  145 (265)
T 2oxt_A           72 VELTGRVVDLGCGRGGWSYYAASR---PHVMDVRAYT-LGVGGHEVPRITESYGWNIVKFKSRVDIHTLP--VERTDVIM  145 (265)
T ss_dssp             CCCCEEEEEESCTTSHHHHHHHTS---TTEEEEEEEC-CCCSSCCCCCCCCBTTGGGEEEECSCCTTTSC--CCCCSEEE
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHc---CcEEEEECch-hhhhhhhhhhhhhccCCCeEEEecccCHhHCC--CCCCcEEE
Confidence            346689999999999999999874   7999999998 7543322110000111257788  89998877  78999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      |.
T Consensus       146 sd  147 (265)
T 2oxt_A          146 CD  147 (265)
T ss_dssp             EC
T ss_pred             Ee
Confidence            95

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=99.03  E-value=2.9e-10  Score=93.60  Aligned_cols=87  Identities=11%  Similarity=0.036  Sum_probs=64.5

Q ss_pred             HhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCC--cEEEEEeCCHHHHHHHHHhhhhhccCC
Q 030823           65 WLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI--EKLIMMDTSYDMLKLCKDAQQDAHNDN  142 (171)
Q Consensus        65 ~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~--~~v~gvD~S~~mL~~a~~~~~~~~~~~  142 (171)
                      ..++++-.....+++.+++.+.  ..+..+|||||||+|.++..|.+.+..  .+|+++|++++|++.+++..      .
T Consensus        18 k~~GQ~fL~d~~i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~~~~------~   89 (279)
T 3uzu_A           18 KRFGQNFLVDHGVIDAIVAAIR--PERGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLEQRF------G   89 (279)
T ss_dssp             CCCSCCEECCHHHHHHHHHHHC--CCTTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHHHHH------G
T ss_pred             ccCCccccCCHHHHHHHHHhcC--CCCcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHHHhc------C
Confidence            3466654444556666666553  245689999999999999999875421  34999999999999998741      2


Q ss_pred             CceeEEEccCCCCCCCC
Q 030823          143 IETCFVVGDEEFLPLKE  159 (171)
Q Consensus       143 ~~~~~~~~D~e~LPf~~  159 (171)
                      .++.++++|+..+|+++
T Consensus        90 ~~v~~i~~D~~~~~~~~  106 (279)
T 3uzu_A           90 ELLELHAGDALTFDFGS  106 (279)
T ss_dssp             GGEEEEESCGGGCCGGG
T ss_pred             CCcEEEECChhcCChhH
Confidence            35788999999998754

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=99.03  E-value=1.5e-09  Score=89.45  Aligned_cols=75  Identities=8%  Similarity=0.013  Sum_probs=61.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+.+..+..+++++|+| .|++.+++...   ..+.  ++.++.+|....|++++ ||+|++
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~-~D~v~~  238 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENAR---IQGVASRYHTIAGSAFEVDYGND-YDLVLL  238 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHH---HHTCGGGEEEEESCTTTSCCCSC-EEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHH---hcCCCcceEEEecccccCCCCCC-CcEEEE
Confidence            45689999999999999999887666799999999 99999987542   1222  48899999988887655 999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       239 ~~  240 (335)
T 2r3s_A          239 PN  240 (335)
T ss_dssp             ES
T ss_pred             cc
Confidence            64

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=99.03  E-value=3.6e-10  Score=93.49  Aligned_cols=81  Identities=15%  Similarity=0.112  Sum_probs=63.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCCCCC--CCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEFLPL--KERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~LPf--~~~sfDlV  165 (171)
                      .+..+|||||||+|.++..+.+..+..+|+++|+|+.|++.+++....  ......++.++++|...++.  ++++||+|
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~~fDvI  173 (304)
T 3bwc_A           94 PKPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQTPDNTYDVV  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSSCTTCEEEE
T ss_pred             CCCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhccCCceeEE
Confidence            355799999999999999998765678999999999999999874310  01123467889999887764  47899999


Q ss_pred             EEecc
Q 030823          166 FVLAL  170 (171)
Q Consensus       166 ~s~~~  170 (171)
                      ++...
T Consensus       174 i~d~~  178 (304)
T 3bwc_A          174 IIDTT  178 (304)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            98753

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=99.02  E-value=6.5e-10  Score=90.46  Aligned_cols=76  Identities=7%  Similarity=-0.008  Sum_probs=62.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||+|.++..+++..+..+|+++|+|++|++.+++...   ..++ ++.++++|.+.+|. +++||+|+++
T Consensus       118 ~~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~---~n~l~~~~~~~~d~~~~~~-~~~~D~Vi~d  193 (272)
T 3a27_A          118 NENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIK---LNKLNNVIPILADNRDVEL-KDVADRVIMG  193 (272)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHH---HTTCSSEEEEESCGGGCCC-TTCEEEEEEC
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCCEEEEECChHHcCc-cCCceEEEEC
Confidence            45689999999999999999886555699999999999999987542   2333 57789999988755 7899999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       194 ~  194 (272)
T 3a27_A          194 Y  194 (272)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=99.02  E-value=9.7e-10  Score=92.49  Aligned_cols=81  Identities=19%  Similarity=0.175  Sum_probs=62.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCC-C-CCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFL-P-LKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~L-P-f~~~sfDlV  165 (171)
                      ....+|||||||+|.++..+++..+..+|+++|+|++|++.|++.....  .....++.++++|.... + +++++||+|
T Consensus       119 ~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~~~~~fDlI  198 (334)
T 1xj5_A          119 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  198 (334)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhccCCCccEE
Confidence            3457999999999999999998656789999999999999998753210  01123578899997654 2 456899999


Q ss_pred             EEecc
Q 030823          166 FVLAL  170 (171)
Q Consensus       166 ~s~~~  170 (171)
                      ++...
T Consensus       199 i~d~~  203 (334)
T 1xj5_A          199 IVDSS  203 (334)
T ss_dssp             EECCC
T ss_pred             EECCC
Confidence            98653

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=99.02  E-value=1.6e-09  Score=91.32  Aligned_cols=76  Identities=8%  Similarity=-0.065  Sum_probs=62.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC--CCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL--PLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L--Pf~~~sfDlV  165 (171)
                      ....+|||||||+|.++..+.+.++..+++++|+ ++|++.+++...   ..+.  ++.++.+|....  |++ ++||+|
T Consensus       178 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~p-~~~D~v  252 (363)
T 3dp7_A          178 HHPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTA---GLSGSERIHGHGANLLDRDVPFP-TGFDAV  252 (363)
T ss_dssp             GCCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHT---TCTTGGGEEEEECCCCSSSCCCC-CCCSEE
T ss_pred             cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHH---hcCcccceEEEEccccccCCCCC-CCcCEE
Confidence            3568999999999999999988777779999999 999999987542   2232  588999999875  675 899999


Q ss_pred             EEecc
Q 030823          166 FVLAL  170 (171)
Q Consensus       166 ~s~~~  170 (171)
                      ++..+
T Consensus       253 ~~~~v  257 (363)
T 3dp7_A          253 WMSQF  257 (363)
T ss_dssp             EEESC
T ss_pred             EEech
Confidence            98753

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=99.02  E-value=1.1e-09  Score=90.77  Aligned_cols=80  Identities=14%  Similarity=0.116  Sum_probs=62.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      ....+|||||||+|.++..+.+..+..+|+++|++++|++.+++.....  .....++.++++|+.. ++..+++||+|+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~~~~~fD~Ii  173 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  173 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhhCCCCceEEE
Confidence            3457999999999999999998666789999999999999998753210  0113457788999765 555678999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +..
T Consensus       174 ~d~  176 (304)
T 2o07_A          174 TDS  176 (304)
T ss_dssp             EEC
T ss_pred             ECC
Confidence            865

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=99.01  E-value=7.4e-10  Score=92.08  Aligned_cols=81  Identities=20%  Similarity=0.210  Sum_probs=63.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc---cCCCceeEEEccCCC-CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH---NDNIETCFVVGDEEF-LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~---~~~~~~~~~~~D~e~-LPf~~~sfDlV  165 (171)
                      .+..+|||||||+|.++..+.+..+..+|+++|++++|++.+++......   ....++.++++|... ++..+++||+|
T Consensus        76 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~I  155 (314)
T 1uir_A           76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (314)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhcCCCccEE
Confidence            34579999999999999999886567899999999999999987532100   013467889999865 45567899999


Q ss_pred             EEecc
Q 030823          166 FVLAL  170 (171)
Q Consensus       166 ~s~~~  170 (171)
                      ++...
T Consensus       156 i~d~~  160 (314)
T 1uir_A          156 IIDLT  160 (314)
T ss_dssp             EEECC
T ss_pred             EECCC
Confidence            98754

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=99.01  E-value=1e-09  Score=83.84  Aligned_cols=67  Identities=16%  Similarity=0.065  Sum_probs=53.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCC--CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----------
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGG--IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------  156 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~--~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----------  156 (171)
                      .+..+|||+|||+|.++..+++..+  ..+|+|+|+|+..             ...++.++++|.+.++           
T Consensus        21 ~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~~~-------------~~~~v~~~~~d~~~~~~~~~~~~~~i~   87 (201)
T 2plw_A           21 KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKIMD-------------PIPNVYFIQGEIGKDNMNNIKNINYID   87 (201)
T ss_dssp             CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSCCC-------------CCTTCEEEECCTTTTSSCCC-------
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCccC-------------CCCCceEEEccccchhhhhhccccccc
Confidence            4567999999999999999987654  5799999999821             1124678899998887           


Q ss_pred             --------------CCCCccceEEEec
Q 030823          157 --------------LKERYACRFFVLA  169 (171)
Q Consensus       157 --------------f~~~sfDlV~s~~  169 (171)
                                    +++++||+|+++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~fD~v~~~~  114 (201)
T 2plw_A           88 NMNNNSVDYKLKEILQDKKIDIILSDA  114 (201)
T ss_dssp             ----CHHHHHHHHHHTTCCEEEEEECC
T ss_pred             cccchhhHHHHHhhcCCCcccEEEeCC
Confidence                          6778999999864

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=99.00  E-value=1.3e-09  Score=89.85  Aligned_cols=80  Identities=11%  Similarity=0.083  Sum_probs=61.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      ....+|||||||+|.++..+.+..+..+|+++|++++|++.+++.....  .....++.++++|... ++..+++||+|+
T Consensus        89 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  168 (296)
T 1inl_A           89 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  168 (296)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCceEEE
Confidence            3457999999999999999988656689999999999999998753210  0113457888998754 455578999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +..
T Consensus       169 ~d~  171 (296)
T 1inl_A          169 IDS  171 (296)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            864

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=99.00  E-value=3.1e-10  Score=83.66  Aligned_cols=67  Identities=18%  Similarity=0.110  Sum_probs=55.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKER  160 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~~  160 (171)
                      .+..+|||+|||+|.++..+.+. ++..+++++|+|+ |+..            .++.++++|...++        ++++
T Consensus        21 ~~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~------------~~~~~~~~d~~~~~~~~~~~~~~~~~   87 (180)
T 1ej0_A           21 KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI------------VGVDFLQGDFRDELVMKALLERVGDS   87 (180)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC------------TTEEEEESCTTSHHHHHHHHHHHTTC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc------------CcEEEEEcccccchhhhhhhccCCCC
Confidence            45679999999999999999876 3457999999999 7632            24677899999887        8889


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|+++.
T Consensus        88 ~~D~i~~~~   96 (180)
T 1ej0_A           88 KVQVVMSDM   96 (180)
T ss_dssp             CEEEEEECC
T ss_pred             ceeEEEECC
Confidence            999999854

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=99.00  E-value=2.3e-09  Score=87.00  Aligned_cols=72  Identities=14%  Similarity=0.113  Sum_probs=60.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|.++..+.   +...|+++|+++.|++.+++..   ...+++..+.++|...-|++ +++|+|+++
T Consensus       104 ~~p~~VLDlGCG~gpLal~~~---~~~~y~a~DId~~~i~~ar~~~---~~~g~~~~~~v~D~~~~~~~-~~~DvvLll  175 (253)
T 3frh_A          104 ETPRRVLDIACGLNPLALYER---GIASVWGCDIHQGLGDVITPFA---REKDWDFTFALQDVLCAPPA-EAGDLALIF  175 (253)
T ss_dssp             CCCSEEEEETCTTTHHHHHHT---TCSEEEEEESBHHHHHHHHHHH---HHTTCEEEEEECCTTTSCCC-CBCSEEEEE
T ss_pred             CCCCeEEEecCCccHHHHHhc---cCCeEEEEeCCHHHHHHHHHHH---HhcCCCceEEEeecccCCCC-CCcchHHHH
Confidence            457899999999999998877   4579999999999999998754   23567788899999888864 599999876

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=99.00  E-value=4.3e-10  Score=93.49  Aligned_cols=91  Identities=7%  Similarity=-0.080  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG  150 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~  150 (171)
                      +++..+..+...+.  ..+..+|||+|||+|..+..+++.. +.++|+++|+|+.|++.+++...   ..+. ++.++++
T Consensus       102 ~qd~~s~l~~~~l~--~~~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~---~~g~~~v~~~~~  176 (315)
T 1ixk_A          102 IQEASSMYPPVALD--PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS---RLGVLNVILFHS  176 (315)
T ss_dssp             ECCHHHHHHHHHHC--CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH---HHTCCSEEEESS
T ss_pred             EeCHHHHHHHHHhC--CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHH---HhCCCeEEEEEC
Confidence            44444444433332  2456899999999999999998753 34799999999999999987543   1233 5788899


Q ss_pred             cCCCCCCCCCccceEEEe
Q 030823          151 DEEFLPLKERYACRFFVL  168 (171)
Q Consensus       151 D~e~LPf~~~sfDlV~s~  168 (171)
                      |...++..+++||+|++.
T Consensus       177 D~~~~~~~~~~fD~Il~d  194 (315)
T 1ixk_A          177 SSLHIGELNVEFDKILLD  194 (315)
T ss_dssp             CGGGGGGGCCCEEEEEEE
T ss_pred             ChhhcccccccCCEEEEe
Confidence            998887667899999985

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=98.99  E-value=9.7e-10  Score=91.83  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=61.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~s  167 (171)
                      +..+|||||||+|.++..+.+..+..+|+++|+|++|++.+++.....  .....++.++++|... ++..+++||+|++
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fDvIi~  195 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVIIV  195 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEEE
T ss_pred             CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhcCCCceEEEE
Confidence            457999999999999999987656789999999999999998753210  0012357888998765 3445689999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       196 d~  197 (321)
T 2pt6_A          196 DS  197 (321)
T ss_dssp             EC
T ss_pred             CC
Confidence            75

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=98.98  E-value=3.2e-09  Score=89.97  Aligned_cols=75  Identities=15%  Similarity=0.064  Sum_probs=61.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC-CCC-CCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF-LPL-KERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~-LPf-~~~sfDlV~s  167 (171)
                      +..+|||+| |+|.++..++..++..+|+++|+|++|++.+++...   ..+. ++.++++|... +|. .+++||+|++
T Consensus       172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~---~~g~~~v~~~~~D~~~~l~~~~~~~fD~Vi~  247 (373)
T 2qm3_A          172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAAN---EIGYEDIEIFTFDLRKPLPDYALHKFDTFIT  247 (373)
T ss_dssp             TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHH---HHTCCCEEEECCCTTSCCCTTTSSCBSEEEE
T ss_pred             CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCEEEEEChhhhhchhhccCCccEEEE
Confidence            467999999 999999999876555799999999999999987542   1233 68889999988 774 4679999999


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       248 ~~  249 (373)
T 2qm3_A          248 DP  249 (373)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=98.98  E-value=2.9e-09  Score=92.30  Aligned_cols=84  Identities=14%  Similarity=0.095  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP  156 (171)
                      .++.|.+.+.. ..+..+|||+|||+|.++..|++.  ..+|+|+|+|++|++.|++...   ..+.++.|+++|.+.++
T Consensus       277 ~~e~l~~~~~~-~~~~~~VLDlgcG~G~~sl~la~~--~~~V~gvD~s~~ai~~A~~n~~---~ngl~v~~~~~d~~~~~  350 (425)
T 2jjq_A          277 QAVNLVRKVSE-LVEGEKILDMYSGVGTFGIYLAKR--GFNVKGFDSNEFAIEMARRNVE---INNVDAEFEVASDREVS  350 (425)
T ss_dssp             HHHHHHHHHHH-HCCSSEEEEETCTTTHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HHTCCEEEEECCTTTCC
T ss_pred             HHHHHHHHhhc-cCCCCEEEEeeccchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHH---HcCCcEEEEECChHHcC
Confidence            34444444433 345689999999999999999884  4699999999999999987442   12333789999998876


Q ss_pred             CCCCccceEEEe
Q 030823          157 LKERYACRFFVL  168 (171)
Q Consensus       157 f~~~sfDlV~s~  168 (171)
                      ..  +||+|+++
T Consensus       351 ~~--~fD~Vv~d  360 (425)
T 2jjq_A          351 VK--GFDTVIVD  360 (425)
T ss_dssp             CT--TCSEEEEC
T ss_pred             cc--CCCEEEEc
Confidence            33  89999985

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=98.98  E-value=2.1e-09  Score=87.77  Aligned_cols=81  Identities=16%  Similarity=0.121  Sum_probs=62.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      ....+|||||||+|.++..+.+..+..+|+++|++++|++.+++.....  .....++.++++|+.. ++..+++||+|+
T Consensus        74 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~~~~~fD~Ii  153 (275)
T 1iy9_A           74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (275)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhhCCCCeeEEE
Confidence            3468999999999999999987655689999999999999998743210  0123467889999765 455578999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      +...
T Consensus       154 ~d~~  157 (275)
T 1iy9_A          154 VDST  157 (275)
T ss_dssp             ESCS
T ss_pred             ECCC
Confidence            8653

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=98.98  E-value=2.1e-09  Score=93.62  Aligned_cols=89  Identities=11%  Similarity=-0.058  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHH-------HHhhhhhccCC---Cc
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLC-------KDAQQDAHNDN---IE  144 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a-------~~~~~~~~~~~---~~  144 (171)
                      ..++..+++.+.  ..+..+|||||||+|.++..+++..+..+|+|+|+|++|++.|       ++...   ..+   .+
T Consensus       228 p~~v~~ml~~l~--l~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~---~~Gl~~~n  302 (433)
T 1u2z_A          228 PNFLSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK---LYGMRLNN  302 (433)
T ss_dssp             HHHHHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH---HTTBCCCC
T ss_pred             HHHHHHHHHhcC--CCCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHH---HcCCCCCc
Confidence            344555555543  2456899999999999999998754556899999999999888       54332   233   35


Q ss_pred             eeEEEccCCCC--CC--CCCccceEEEe
Q 030823          145 TCFVVGDEEFL--PL--KERYACRFFVL  168 (171)
Q Consensus       145 ~~~~~~D~e~L--Pf--~~~sfDlV~s~  168 (171)
                      +.++++|....  ++  ..++||+|+++
T Consensus       303 V~~i~gD~~~~~~~~~~~~~~FDvIvvn  330 (433)
T 1u2z_A          303 VEFSLKKSFVDNNRVAELIPQCDVILVN  330 (433)
T ss_dssp             EEEEESSCSTTCHHHHHHGGGCSEEEEC
T ss_pred             eEEEEcCccccccccccccCCCCEEEEe
Confidence            77788765432  23  35799999986

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=98.97  E-value=1.6e-09  Score=87.61  Aligned_cols=76  Identities=16%  Similarity=0.106  Sum_probs=61.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .+..+|||+|||+|.++..+++. ++..+|+++|+|+++++.+++...   ..+.  ++.++.+|.... +++++||+|+
T Consensus       111 ~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~-~~~~~~D~V~  186 (277)
T 1o54_A          111 KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT---KWGLIERVTIKVRDISEG-FDEKDVDALF  186 (277)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH---HTTCGGGEEEECCCGGGC-CSCCSEEEEE
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHH---HcCCCCCEEEEECCHHHc-ccCCccCEEE
Confidence            45679999999999999999876 456899999999999999987542   1232  577888888776 6778999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus       187 ~~~  189 (277)
T 1o54_A          187 LDV  189 (277)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            853

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=98.97  E-value=3.5e-11  Score=96.22  Aligned_cols=93  Identities=11%  Similarity=0.096  Sum_probs=67.0

Q ss_pred             CCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCcee
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETC  146 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~  146 (171)
                      ++++-.....+.+.+++.+.  ..+..+|||+|||+|.++..|++.+  .+|+|+|+|++|++.+++..    ....++.
T Consensus         7 ~gq~fl~~~~~~~~i~~~~~--~~~~~~VLDiG~G~G~~~~~l~~~~--~~v~~id~~~~~~~~a~~~~----~~~~~v~   78 (245)
T 1yub_A            7 YSQNFLTSEKVLNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKL----KLNTRVT   78 (245)
T ss_dssp             SCCCBCCCTTTHHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTT----TTCSEEE
T ss_pred             cCCCCCCCHHHHHHHHHhcC--CCCCCEEEEEeCCCCHHHHHHHHhC--CeEEEEECCHHHHHHHHHHh----ccCCceE
Confidence            34433333444555555442  2356789999999999999998864  79999999999999886532    1123578


Q ss_pred             EEEccCCCCCCCC-CccceEEEe
Q 030823          147 FVVGDEEFLPLKE-RYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e~LPf~~-~sfDlV~s~  168 (171)
                      ++++|...+|+++ ++| .|++|
T Consensus        79 ~~~~D~~~~~~~~~~~f-~vv~n  100 (245)
T 1yub_A           79 LIHQDILQFQFPNKQRY-KIVGN  100 (245)
T ss_dssp             ECCSCCTTTTCCCSSEE-EEEEE
T ss_pred             EEECChhhcCcccCCCc-EEEEe
Confidence            8899999999874 789 66665

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=98.97  E-value=3.5e-09  Score=93.09  Aligned_cols=74  Identities=14%  Similarity=0.097  Sum_probs=59.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||||||+|.++..+++. +..+|+++|+|+ |++.|++...   ..+  .++.++.+|.+.++++ ++||+|+++
T Consensus       158 ~~~~VLDiGcGtG~la~~la~~-~~~~V~gvD~s~-~l~~A~~~~~---~~gl~~~v~~~~~d~~~~~~~-~~fD~Ivs~  231 (480)
T 3b3j_A          158 KDKIVLDVGCGSGILSFFAAQA-GARKIYAVEAST-MAQHAEVLVK---SNNLTDRIVVIPGKVEEVSLP-EQVDIIISE  231 (480)
T ss_dssp             TTCEEEEESCSTTHHHHHHHHT-TCSEEEEEECHH-HHHHHHHHHH---HTTCTTTEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             CCCEEEEecCcccHHHHHHHHc-CCCEEEEEEcHH-HHHHHHHHHH---HcCCCCcEEEEECchhhCccC-CCeEEEEEe
Confidence            4579999999999999988874 456999999998 9998876542   223  2588999999998875 689999997


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus       232 ~~  233 (480)
T 3b3j_A          232 PM  233 (480)
T ss_dssp             CC
T ss_pred             Cc
Confidence            53

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=98.96  E-value=1.5e-09  Score=91.07  Aligned_cols=75  Identities=9%  Similarity=0.053  Sum_probs=59.9

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC--CCCCCccceEEEec
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL--PLKERYACRFFVLA  169 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L--Pf~~~sfDlV~s~~  169 (171)
                      .+|||||||+|.++..+.+..+..+|+++|++++|++.+++...  .....++.++++|...+  .+++++||+|++..
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~--~~~~~rv~v~~~Da~~~l~~~~~~~fDvIi~D~  167 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD--IPRAPRVKIRVDDARMVAESFTPASRDVIIRDV  167 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC--CCCTTTEEEEESCHHHHHHTCCTTCEEEEEECC
T ss_pred             CEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc--ccCCCceEEEECcHHHHHhhccCCCCCEEEECC
Confidence            48999999999999999875555699999999999999987532  11234688899997654  35678999999864

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=98.96  E-value=7.8e-10  Score=91.97  Aligned_cols=76  Identities=9%  Similarity=-0.028  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CCC---Cccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LKE---RYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~~---~sfDl  164 (171)
                      .+..+|||+|||+|.++..+++..+..+|+|+|.|++|++.|++...   ..+.++.++++|.+.+|  +++   ++||.
T Consensus        25 ~~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~~~~~---~~g~~v~~v~~d~~~l~~~l~~~g~~~~D~  101 (301)
T 1m6y_A           25 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK---EFSDRVSLFKVSYREADFLLKTLGIEKVDG  101 (301)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG---GGTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH---hcCCcEEEEECCHHHHHHHHHhcCCCCCCE
Confidence            35689999999999999999886556799999999999999987542   12246889999988876  222   68999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |++.
T Consensus       102 Vl~D  105 (301)
T 1m6y_A          102 ILMD  105 (301)
T ss_dssp             EEEE
T ss_pred             EEEc
Confidence            9874

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=98.96  E-value=1.6e-09  Score=84.41  Aligned_cols=76  Identities=11%  Similarity=-0.021  Sum_probs=58.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-C-CC---CCcc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-P-LK---ERYA  162 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-P-f~---~~sf  162 (171)
                      +..+|||||||+|..+..+++..+ ..+|+++|++++|++.+++...   ..+.  .+.++++|.... | ++   .++|
T Consensus        58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~~~~~f  134 (223)
T 3duw_A           58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIE---RANLNDRVEVRTGLALDSLQQIENEKYEPF  134 (223)
T ss_dssp             TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEESCHHHHHHHHHHTTCCCC
T ss_pred             CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHHhcCCCCc
Confidence            458999999999999999998654 6799999999999999987542   2233  478899987543 2 21   2679


Q ss_pred             ceEEEec
Q 030823          163 CRFFVLA  169 (171)
Q Consensus       163 DlV~s~~  169 (171)
                      |+|++.+
T Consensus       135 D~v~~d~  141 (223)
T 3duw_A          135 DFIFIDA  141 (223)
T ss_dssp             SEEEECS
T ss_pred             CEEEEcC
Confidence            9999764

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=98.95  E-value=1.3e-09  Score=84.33  Aligned_cols=59  Identities=12%  Similarity=0.012  Sum_probs=50.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..+.     .+|+++|+|+.                 ++.++++|.+.+|+++++||+|+++.
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l~-----~~v~~~D~s~~-----------------~~~~~~~d~~~~~~~~~~fD~v~~~~  123 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSIR-----NPVHCFDLASL-----------------DPRVTVCDMAQVPLEDESVDVAVFCL  123 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHCC-----SCEEEEESSCS-----------------STTEEESCTTSCSCCTTCEEEEEEES
T ss_pred             CCCCeEEEECCcCCHHHHHhh-----ccEEEEeCCCC-----------------CceEEEeccccCCCCCCCEeEEEEeh
Confidence            355799999999999998883     58999999975                 24568999999999999999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       124 ~  124 (215)
T 2zfu_A          124 S  124 (215)
T ss_dssp             C
T ss_pred             h
Confidence            4

>1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A*

Probab=98.95  E-value=1.6e-09  Score=88.98  Aligned_cols=79  Identities=10%  Similarity=-0.058  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCcH----HHHHHhhc-CC---CcEEEEEeCCHHHHHHHHHhhhhh-c----------------c---CC
Q 030823           91 TFPTALCLGGSLEA----VRRLLRGR-GG---IEKLIMMDTSYDMLKLCKDAQQDA-H----------------N---DN  142 (171)
Q Consensus        91 ~~~~vLDlGcGtG~----l~~~L~~~-~~---~~~v~gvD~S~~mL~~a~~~~~~~-~----------------~---~~  142 (171)
                      +..+|||+|||||.    ++..|.+. +.   ..+|+|+|+|++||+.|++..... .                .   .+
T Consensus       105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~~y~~~~~~~~~~~~~~~~f~~~~~~~~~  184 (274)
T 1af7_A          105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSGIYRLSELKTLSPQQLQRYFMRGTGPHEG  184 (274)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHTEEEGGGGTTSCHHHHHHHEEECCTTSCS
T ss_pred             CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhcCCchhhhhcCCHHHHHHHhhccccCCCC
Confidence            34689999999998    55556543 11   248999999999999998743100 0                0   01


Q ss_pred             ---------CceeEEEccCCCCCCC-CCccceEEEec
Q 030823          143 ---------IETCFVVGDEEFLPLK-ERYACRFFVLA  169 (171)
Q Consensus       143 ---------~~~~~~~~D~e~LPf~-~~sfDlV~s~~  169 (171)
                               ..+.|..+|....|++ ++.||+|+|..
T Consensus       185 ~~~v~~~lr~~V~F~~~dl~~~~~~~~~~fDlI~crn  221 (274)
T 1af7_A          185 LVRVRQELANYVEFSSVNLLEKQYNVPGPFDAIFCRN  221 (274)
T ss_dssp             EEEECHHHHTTEEEEECCTTCSSCCCCCCEEEEEECS
T ss_pred             ceeechhhcccCeEEecccCCCCCCcCCCeeEEEECC
Confidence                     1478899999887775 68999999954

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=98.94  E-value=1.5e-09  Score=90.62  Aligned_cols=80  Identities=14%  Similarity=0.071  Sum_probs=61.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      ....+|||||||+|.++..+.+..+..+|+++|++++|++.|++.....  .....++.++++|+.. ++..+++||+|+
T Consensus       107 ~~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~~~~~fD~Ii  186 (314)
T 2b2c_A          107 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  186 (314)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHhcCCCceEEE
Confidence            3457999999999999999988656789999999999999998754210  0013457788898765 445678999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +.+
T Consensus       187 ~d~  189 (314)
T 2b2c_A          187 TDS  189 (314)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            875

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=98.94  E-value=2.7e-09  Score=91.36  Aligned_cols=75  Identities=11%  Similarity=0.053  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||||||||.++...++.+ ..+|+++|.|+ |+..|++.... +.-.-.+.++.++.+.+.++ +.||+|+|..
T Consensus        83 ~~k~VLDvG~GtGiLs~~Aa~aG-A~~V~ave~s~-~~~~a~~~~~~-n~~~~~i~~i~~~~~~~~lp-e~~DvivsE~  157 (376)
T 4hc4_A           83 RGKTVLDVGAGTGILSIFCAQAG-ARRVYAVEASA-IWQQAREVVRF-NGLEDRVHVLPGPVETVELP-EQVDAIVSEW  157 (376)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECST-THHHHHHHHHH-TTCTTTEEEEESCTTTCCCS-SCEEEEECCC
T ss_pred             CCCEEEEeCCCccHHHHHHHHhC-CCEEEEEeChH-HHHHHHHHHHH-cCCCceEEEEeeeeeeecCC-ccccEEEeec
Confidence            45789999999999988777653 46999999995 99888764421 11222588899999999885 7899999843

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=98.93  E-value=1.7e-09  Score=90.77  Aligned_cols=76  Identities=13%  Similarity=0.026  Sum_probs=57.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC----CCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL----KERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf----~~~sfDlV~  166 (171)
                      +..+|||+|||+|.++..++..+  .+|+++|+|+.|++.+++........+.++.++++|...+..    .+++||+|+
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~g--a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii  230 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  230 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCcEEEcccccCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHhcCCCceEEE
Confidence            45799999999999999998754  499999999999999987542100111137889999876532    157999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ++
T Consensus       231 ~d  232 (332)
T 2igt_A          231 TD  232 (332)
T ss_dssp             EC
T ss_pred             EC
Confidence            84

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=98.93  E-value=5.1e-09  Score=82.36  Aligned_cols=75  Identities=15%  Similarity=0.054  Sum_probs=60.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+++.  ..+|+++|+|++|++.+++...   ..+  .++.++.+|.....+++++||+|++
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~--~~~v~~vD~~~~~~~~a~~~~~---~~~~~~~~~~~~~d~~~~~~~~~~~D~v~~  164 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV--AGEVWTFEAVEEFYKTAQKNLK---KFNLGKNVKFFNVDFKDAEVPEGIFHAAFV  164 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHHH---HTTCCTTEEEECSCTTTSCCCTTCBSEEEE
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh--CCEEEEEecCHHHHHHHHHHHH---HcCCCCcEEEEEcChhhcccCCCcccEEEE
Confidence            35679999999999999999875  5799999999999999987542   122  3577888998875546789999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      +.
T Consensus       165 ~~  166 (248)
T 2yvl_A          165 DV  166 (248)
T ss_dssp             CS
T ss_pred             CC
Confidence            53

>1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A

Probab=98.92  E-value=1.8e-09  Score=87.49  Aligned_cols=82  Identities=13%  Similarity=0.127  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcE--EEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEK--LIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~--v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~  154 (171)
                      +++.+++.+.  ..+..+|||||||+|.++. +.. .  .+  |+++|++++|++.+++...    ...++.++.+|+..
T Consensus         9 i~~~iv~~~~--~~~~~~VLEIG~G~G~lt~-l~~-~--~~~~v~avEid~~~~~~a~~~~~----~~~~v~~i~~D~~~   78 (252)
T 1qyr_A            9 VIDSIVSAIN--PQKGQAMVEIGPGLAALTE-PVG-E--RLDQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMT   78 (252)
T ss_dssp             HHHHHHHHHC--CCTTCCEEEECCTTTTTHH-HHH-T--TCSCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGG
T ss_pred             HHHHHHHhcC--CCCcCEEEEECCCCcHHHH-hhh-C--CCCeEEEEECCHHHHHHHHHHhc----cCCceEEEECchhh
Confidence            4445554442  2356789999999999999 764 3  46  9999999999999986431    11368889999999


Q ss_pred             CCCCC-----CccceEEEe
Q 030823          155 LPLKE-----RYACRFFVL  168 (171)
Q Consensus       155 LPf~~-----~sfDlV~s~  168 (171)
                      +++++     +..|.|++|
T Consensus        79 ~~~~~~~~~~~~~~~vvsN   97 (252)
T 1qyr_A           79 FNFGELAEKMGQPLRVFGN   97 (252)
T ss_dssp             CCHHHHHHHHTSCEEEEEE
T ss_pred             CCHHHhhcccCCceEEEEC
Confidence            88753     235678876

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=98.91  E-value=1.7e-09  Score=88.45  Aligned_cols=77  Identities=16%  Similarity=0.159  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--cc-------CCCceeEEEccCCC-CCCCCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HN-------DNIETCFVVGDEEF-LPLKER  160 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~-------~~~~~~~~~~D~e~-LPf~~~  160 (171)
                      ...+|||||||+|.++..+.+. +..+|+++|++++|++.|++.. ..  ..       ...++.++++|+.. ++. ++
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~-~~~~v~~vDid~~~i~~ar~~~-~~~~~l~~~~~~~~~~~v~~~~~D~~~~l~~-~~  151 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLI-KIDNGLLEAMLNGKHEKAKLTIGDGFEFIKN-NR  151 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHT-CTTTTHHHHHHTTCCSSEEEEESCHHHHHHH-CC
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHH-hhccccccccccCCCCcEEEEECchHHHhcc-cC
Confidence            4579999999999999999886 6689999999999999998753 11  00       23457788888754 343 68


Q ss_pred             ccceEEEecc
Q 030823          161 YACRFFVLAL  170 (171)
Q Consensus       161 sfDlV~s~~~  170 (171)
                      +||+|++...
T Consensus       152 ~fD~Ii~d~~  161 (281)
T 1mjf_A          152 GFDVIIADST  161 (281)
T ss_dssp             CEEEEEEECC
T ss_pred             CeeEEEECCC
Confidence            9999998753

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=98.91  E-value=1.7e-09  Score=86.78  Aligned_cols=76  Identities=14%  Similarity=-0.024  Sum_probs=59.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCC------CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPL------KER  160 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf------~~~  160 (171)
                      +..+|||||||+|..+..+++..+ .++|+++|+|++|++.+++...   ..+.  ++.++++|... +|.      +++
T Consensus        79 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~---~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  155 (247)
T 1sui_A           79 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK---KAGVDHKIDFREGPALPVLDEMIKDEKNHG  155 (247)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH---HTTCGGGEEEEESCHHHHHHHHHHSGGGTT
T ss_pred             CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCCeEEEECCHHHHHHHHHhccCCCC
Confidence            457999999999999999987543 5799999999999999987543   2333  57889998754 342      268


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|++.+
T Consensus       156 ~fD~V~~d~  164 (247)
T 1sui_A          156 SYDFIFVDA  164 (247)
T ss_dssp             CBSEEEECS
T ss_pred             CEEEEEEcC
Confidence            999999864

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=98.91  E-value=1.9e-09  Score=88.24  Aligned_cols=80  Identities=14%  Similarity=0.103  Sum_probs=61.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc--cCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH--NDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~--~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      .+..+|||||||+|.++..+.+..+..+|+++|++++|++.+++......  ....++.++++|... ++..+++||+|+
T Consensus        77 ~~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~~~~fD~Ii  156 (283)
T 2i7c_A           77 KEPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENVTNTYDVII  156 (283)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHCCSCEEEEE
T ss_pred             CCCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhCCCCceEEE
Confidence            34579999999999999999876667899999999999999987532100  013457788898765 343478999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +..
T Consensus       157 ~d~  159 (283)
T 2i7c_A          157 VDS  159 (283)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            865

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=98.91  E-value=1.7e-09  Score=93.30  Aligned_cols=91  Identities=14%  Similarity=0.089  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccC
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDE  152 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~  152 (171)
                      +++..+..+...+.  ..+..+|||+|||+|..+..+++..+.++|+++|+|+.+++.+++...   ..+.++.++++|.
T Consensus       230 ~qd~~s~~~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~---~~g~~~~~~~~D~  304 (429)
T 1sqg_A          230 VQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLK---RLGMKATVKQGDG  304 (429)
T ss_dssp             ECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHH---HTTCCCEEEECCT
T ss_pred             eeCHHHHHHHHHcC--CCCcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHH---HcCCCeEEEeCch
Confidence            45555555544443  245689999999999999999876555799999999999999987542   2345577889999


Q ss_pred             CCCC--CCCCccceEEEe
Q 030823          153 EFLP--LKERYACRFFVL  168 (171)
Q Consensus       153 e~LP--f~~~sfDlV~s~  168 (171)
                      ..++  +++++||+|++.
T Consensus       305 ~~~~~~~~~~~fD~Vl~D  322 (429)
T 1sqg_A          305 RYPSQWCGEQQFDRILLD  322 (429)
T ss_dssp             TCTHHHHTTCCEEEEEEE
T ss_pred             hhchhhcccCCCCEEEEe
Confidence            8887  667899999974

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=98.90  E-value=5.5e-10  Score=89.44  Aligned_cols=76  Identities=13%  Similarity=-0.080  Sum_probs=59.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-CCC-----CCc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-PLK-----ERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-Pf~-----~~s  161 (171)
                      +..+|||||||+|..+..|++..+ .++|+++|++++|++.+++...   ..+.  ++.++++|+... +..     +++
T Consensus        60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~g~~~~i~~~~gda~~~l~~~~~~~~~~~  136 (242)
T 3r3h_A           60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWR---EAKQEHKIKLRLGPALDTLHSLLNEGGEHQ  136 (242)
T ss_dssp             TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHH---HTTCTTTEEEEESCHHHHHHHHHHHHCSSC
T ss_pred             CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHhhccCCCC
Confidence            457999999999999999987543 6799999999999999887543   2232  588899998554 322     589


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|++.+
T Consensus       137 fD~V~~d~  144 (242)
T 3r3h_A          137 FDFIFIDA  144 (242)
T ss_dssp             EEEEEEES
T ss_pred             EeEEEEcC
Confidence            99999864

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=98.90  E-value=9.7e-09  Score=85.96  Aligned_cols=75  Identities=7%  Similarity=0.032  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+.+..+..+++++|+ ++|++.+++...   ..+.  .+.++.+|....|+++.  |+|++
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~--D~v~~  262 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EKGVADRMRGIAVDIYKESYPEA--DAVLF  262 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH---HTTCTTTEEEEECCTTTSCCCCC--SEEEE
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHH---hcCCCCCEEEEeCccccCCCCCC--CEEEE
Confidence            4568999999999999999998776679999999 999999987542   1222  48899999998888654  99998


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      ..+
T Consensus       263 ~~v  265 (359)
T 1x19_A          263 CRI  265 (359)
T ss_dssp             ESC
T ss_pred             ech
Confidence            753

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=98.89  E-value=9.8e-09  Score=85.97  Aligned_cols=75  Identities=12%  Similarity=0.056  Sum_probs=59.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++...   ..+.  ++.++.+|... +++. .||+|++
T Consensus       181 ~~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~  254 (374)
T 1qzz_A          181 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFA---DAGLADRVTVAEGDFFK-PLPV-TADVVLL  254 (374)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH---HTTCTTTEEEEECCTTS-CCSC-CEEEEEE
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHH---hcCCCCceEEEeCCCCC-cCCC-CCCEEEE
Confidence            3467999999999999999988766679999999 999999987542   1232  58889999865 4443 4999998


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      +.+
T Consensus       255 ~~v  257 (374)
T 1qzz_A          255 SFV  257 (374)
T ss_dssp             ESC
T ss_pred             ecc
Confidence            753

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=98.88  E-value=4.4e-09  Score=86.37  Aligned_cols=75  Identities=16%  Similarity=-0.009  Sum_probs=61.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||+|-++..+....+..+|+++|+++.|++.+++...   ..++...+.+.|...-+ +++.+|+|+++
T Consensus       131 ~~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~---~~g~~~~~~v~D~~~~~-p~~~~DvaL~l  205 (281)
T 3lcv_B          131 PRPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALT---RLNVPHRTNVADLLEDR-LDEPADVTLLL  205 (281)
T ss_dssp             CCCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHH---HTTCCEEEEECCTTTSC-CCSCCSEEEET
T ss_pred             CCCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHH---hcCCCceEEEeeecccC-CCCCcchHHHH
Confidence            45789999999999999888776677899999999999999987542   34666777888876666 57889999875

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=98.88  E-value=4.7e-09  Score=91.20  Aligned_cols=91  Identities=18%  Similarity=0.043  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG  150 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~-~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~  150 (171)
                      +++..+..+...+.  ..+..+|||+|||+|..+..+++..+. ++|+++|+|+.+++.+++...   ..+. ++.++++
T Consensus       243 ~qd~~s~l~~~~l~--~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~---~~g~~~v~~~~~  317 (450)
T 2yxl_A          243 VQEEASAVASIVLD--PKPGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVK---RMGIKIVKPLVK  317 (450)
T ss_dssp             ECCHHHHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH---HTTCCSEEEECS
T ss_pred             ecCchhHHHHHhcC--CCCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHH---HcCCCcEEEEEc
Confidence            44444444433332  245679999999999999999875443 799999999999999987542   2343 5788899


Q ss_pred             cCCCCC--CCCCccceEEEe
Q 030823          151 DEEFLP--LKERYACRFFVL  168 (171)
Q Consensus       151 D~e~LP--f~~~sfDlV~s~  168 (171)
                      |...++  +++++||+|++.
T Consensus       318 D~~~~~~~~~~~~fD~Vl~D  337 (450)
T 2yxl_A          318 DARKAPEIIGEEVADKVLLD  337 (450)
T ss_dssp             CTTCCSSSSCSSCEEEEEEE
T ss_pred             ChhhcchhhccCCCCEEEEc
Confidence            998887  666899999974

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=98.88  E-value=5.7e-09  Score=82.49  Aligned_cols=76  Identities=12%  Similarity=0.056  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC----------
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP----------  156 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LP----------  156 (171)
                      +..+|||+|||+|..+..+++..+ ..+|+++|+++++++.+++...   ..+.  .+.++++|... +|          
T Consensus        60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~g~~~~v~~~~~d~~~~~~~~~~~~~~~~  136 (239)
T 2hnk_A           60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWK---ENGLENKIFLKLGSALETLQVLIDSKSAPS  136 (239)
T ss_dssp             TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH---HTTCGGGEEEEESCHHHHHHHHHHCSSCCG
T ss_pred             CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCCEEEEECCHHHHHHHHHhhccccc
Confidence            457999999999999999987643 5799999999999999987542   1233  37788888643 22          


Q ss_pred             ----CCC--CccceEEEec
Q 030823          157 ----LKE--RYACRFFVLA  169 (171)
Q Consensus       157 ----f~~--~sfDlV~s~~  169 (171)
                          |++  ++||+|++.+
T Consensus       137 ~~~~f~~~~~~fD~I~~~~  155 (239)
T 2hnk_A          137 WASDFAFGPSSIDLFFLDA  155 (239)
T ss_dssp             GGTTTCCSTTCEEEEEECS
T ss_pred             ccccccCCCCCcCEEEEeC
Confidence                333  8999999864

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=98.88  E-value=1.9e-08  Score=84.77  Aligned_cols=75  Identities=9%  Similarity=0.024  Sum_probs=61.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++..+.+.++..+++++|+ ++|++.+++...   ..+  .++.++.+|.. .|++. .||+|++
T Consensus       201 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~~l~~~v~~~~~d~~-~~~p~-~~D~v~~  274 (369)
T 3gwz_A          201 SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLT---GRGLADRCEILPGDFF-ETIPD-GADVYLI  274 (369)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH---HTTCTTTEEEEECCTT-TCCCS-SCSEEEE
T ss_pred             ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhh---hcCcCCceEEeccCCC-CCCCC-CceEEEh
Confidence            3468999999999999999988777779999999 999999987542   122  35889999987 56665 8999998


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      ..+
T Consensus       275 ~~v  277 (369)
T 3gwz_A          275 KHV  277 (369)
T ss_dssp             ESC
T ss_pred             hhh
Confidence            753

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=98.87  E-value=3.8e-10  Score=90.19  Aligned_cols=78  Identities=14%  Similarity=0.032  Sum_probs=51.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc-cCCCceeEEE-ccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-NDNIETCFVV-GDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~-~~~~~~~~~~-~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||||.++..|++.+ ..+|+|+|+|++|++.+.+...... ....++.++. .+.+..++...+||++++
T Consensus        36 ~~g~~VLDiGcGtG~~t~~la~~g-~~~V~gvDis~~ml~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~D~v~~  114 (232)
T 3opn_A           36 INGKTCLDIGSSTGGFTDVMLQNG-AKLVYALDVGTNQLAWKIRSDERVVVMEQFNFRNAVLADFEQGRPSFTSIDVSFI  114 (232)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT-CSEEEEECSSCCCCCHHHHTCTTEEEECSCCGGGCCGGGCCSCCCSEEEECCSSS
T ss_pred             CCCCEEEEEccCCCHHHHHHHhcC-CCEEEEEcCCHHHHHHHHHhCccccccccceEEEeCHhHcCcCCCCEEEEEEEhh
Confidence            345699999999999999998853 3599999999999999765321000 0011233333 344433345678888876


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus       115 ~  115 (232)
T 3opn_A          115 S  115 (232)
T ss_dssp             C
T ss_pred             h
Confidence            4

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=98.87  E-value=1.9e-09  Score=87.62  Aligned_cols=76  Identities=11%  Similarity=-0.005  Sum_probs=61.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC----CCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL----KERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf----~~~sfD  163 (171)
                      .+..+|||+|||+|..+..+++..+ .++|+++|+|+.|++.+++...   ..+. ++.++++|...++.    .+++||
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~---~~g~~~v~~~~~D~~~~~~~~~~~~~~fD  158 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNIN---RMGVLNTIIINADMRKYKDYLLKNEIFFD  158 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHH---HhCCCcEEEEeCChHhcchhhhhccccCC
Confidence            4568999999999999999987433 3799999999999999987542   2333 67888999887765    368999


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|++.
T Consensus       159 ~Vl~d  163 (274)
T 3ajd_A          159 KILLD  163 (274)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99986

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=98.87  E-value=1.1e-08  Score=84.74  Aligned_cols=74  Identities=15%  Similarity=0.042  Sum_probs=59.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +..+|||+|||+|.++..+.+..+..+++++|+ ++|++.+++...   ..+  .++.++.+|.. .|++. +||+|++.
T Consensus       169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~~~~~~v~~~~~d~~-~~~p~-~~D~v~~~  242 (332)
T 3i53_A          169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFL---DTGLSGRAQVVVGSFF-DPLPA-GAGGYVLS  242 (332)
T ss_dssp             GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHH---HTTCTTTEEEEECCTT-SCCCC-SCSEEEEE
T ss_pred             CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhh---hcCcCcCeEEecCCCC-CCCCC-CCcEEEEe
Confidence            357999999999999999988777779999999 999999987542   123  35889999986 46654 89999987


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus       243 ~v  244 (332)
T 3i53_A          243 AV  244 (332)
T ss_dssp             SC
T ss_pred             hh
Confidence            53

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=98.86  E-value=3.9e-09  Score=83.50  Aligned_cols=76  Identities=13%  Similarity=0.003  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC----CCCCCC--Cc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE----FLPLKE--RY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e----~LPf~~--~s  161 (171)
                      +..+|||+|||+|..+..+++..+ ..+|+++|+|+++++.|++...   ..+.  .+.++++|..    .++.++  ++
T Consensus        72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~g~~~~i~~~~~d~~~~l~~l~~~~~~~~  148 (232)
T 3cbg_A           72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQ---KAGVAEKISLRLGPALATLEQLTQGKPLPE  148 (232)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHH---HHTCGGGEEEEESCHHHHHHHHHTSSSCCC
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHHhcCCCCC
Confidence            457999999999999999987543 5799999999999999987542   1222  4778888864    334444  89


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|++.+
T Consensus       149 fD~V~~d~  156 (232)
T 3cbg_A          149 FDLIFIDA  156 (232)
T ss_dssp             EEEEEECS
T ss_pred             cCEEEECC
Confidence            99999764

>3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A*

Probab=98.86  E-value=1.6e-09  Score=93.76  Aligned_cols=70  Identities=10%  Similarity=-0.096  Sum_probs=54.5

Q ss_pred             ccCCCeEEEEcCC------CcHHHHHHh-hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC---
Q 030823           89 RKTFPTALCLGGS------LEAVRRLLR-GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK---  158 (171)
Q Consensus        89 ~~~~~~vLDlGcG------tG~l~~~L~-~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~---  158 (171)
                      ..+..+|||||||      ||..+..+. +.++..+|+|+|+|++|..           ...++.|+++|++.+||.   
T Consensus       214 ~~~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~-----------~~~rI~fv~GDa~dlpf~~~l  282 (419)
T 3sso_A          214 RNQQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV-----------DELRIRTIQGDQNDAEFLDRI  282 (419)
T ss_dssp             TTSCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG-----------CBTTEEEEECCTTCHHHHHHH
T ss_pred             cCCCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh-----------cCCCcEEEEecccccchhhhh
Confidence            3456899999999      655555554 3346689999999999831           223588999999999988   


Q ss_pred             ---CCccceEEEec
Q 030823          159 ---ERYACRFFVLA  169 (171)
Q Consensus       159 ---~~sfDlV~s~~  169 (171)
                         +++||+|++.+
T Consensus       283 ~~~d~sFDlVisdg  296 (419)
T 3sso_A          283 ARRYGPFDIVIDDG  296 (419)
T ss_dssp             HHHHCCEEEEEECS
T ss_pred             hcccCCccEEEECC
Confidence               79999999865

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=98.85  E-value=7.7e-09  Score=85.45  Aligned_cols=74  Identities=12%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      .+|||+|||+|.++..+.+..+..+++++|+ ++|++.+++..... ....++.++.+|... |++ ++||+|++..+
T Consensus       169 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-~~~~~v~~~~~d~~~-~~~-~~~D~v~~~~v  242 (334)
T 2ip2_A          169 RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL-LAGERVSLVGGDMLQ-EVP-SNGDIYLLSRI  242 (334)
T ss_dssp             CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH-HHTTSEEEEESCTTT-CCC-SSCSEEEEESC
T ss_pred             CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc-CCCCcEEEecCCCCC-CCC-CCCCEEEEchh
Confidence            7999999999999999988766679999999 99999998753210 011247889999877 665 78999998753

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=98.83  E-value=2.8e-09  Score=88.37  Aligned_cols=72  Identities=8%  Similarity=-0.022  Sum_probs=48.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE-EEccCCCCC---CCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF-VVGDEEFLP---LKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~-~~~D~e~LP---f~~~sfDlV  165 (171)
                      .+..+|||+|||||.++..|++. +..+|+|+|+|++||+.+.+.       ...+.. ...+...++   ++..+||+|
T Consensus        84 ~~g~~vLDiGcGTG~~t~~L~~~-ga~~V~aVDvs~~mL~~a~r~-------~~rv~~~~~~ni~~l~~~~l~~~~fD~v  155 (291)
T 3hp7_A           84 VEDMITIDIGASTGGFTDVMLQN-GAKLVYAVDVGTNQLVWKLRQ-------DDRVRSMEQYNFRYAEPVDFTEGLPSFA  155 (291)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHT-TCSEEEEECSSSSCSCHHHHT-------CTTEEEECSCCGGGCCGGGCTTCCCSEE
T ss_pred             ccccEEEecCCCccHHHHHHHhC-CCCEEEEEECCHHHHHHHHHh-------CcccceecccCceecchhhCCCCCCCEE
Confidence            35579999999999999999875 346999999999999985431       111111 112333332   334579999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++..
T Consensus       156 ~~d~  159 (291)
T 3hp7_A          156 SIDV  159 (291)
T ss_dssp             EECC
T ss_pred             EEEe
Confidence            8743

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=98.83  E-value=1.1e-08  Score=79.14  Aligned_cols=65  Identities=14%  Similarity=0.018  Sum_probs=51.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC-------C---
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-------E---  159 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~-------~---  159 (171)
                      ++..+|||+|||+|.++..+++.  .++|+|+|+++..             +..++.++.+|....+..       +   
T Consensus        24 ~~g~~VLDlG~G~G~~s~~la~~--~~~V~gvD~~~~~-------------~~~~v~~~~~D~~~~~~~~~~~~~~~~~~   88 (191)
T 3dou_A           24 RKGDAVIEIGSSPGGWTQVLNSL--ARKIISIDLQEME-------------EIAGVRFIRCDIFKETIFDDIDRALREEG   88 (191)
T ss_dssp             CTTCEEEEESCTTCHHHHHHTTT--CSEEEEEESSCCC-------------CCTTCEEEECCTTSSSHHHHHHHHHHHHT
T ss_pred             CCCCEEEEEeecCCHHHHHHHHc--CCcEEEEeccccc-------------cCCCeEEEEccccCHHHHHHHHHHhhccc
Confidence            46789999999999999999885  5799999999731             122577899998887631       1   


Q ss_pred             -CccceEEEec
Q 030823          160 -RYACRFFVLA  169 (171)
Q Consensus       160 -~sfDlV~s~~  169 (171)
                       ++||+|+|+.
T Consensus        89 ~~~~D~Vlsd~   99 (191)
T 3dou_A           89 IEKVDDVVSDA   99 (191)
T ss_dssp             CSSEEEEEECC
T ss_pred             CCcceEEecCC
Confidence             4999999963

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=98.82  E-value=3.2e-09  Score=82.78  Aligned_cols=76  Identities=12%  Similarity=-0.126  Sum_probs=58.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCC-C-CCC----Cc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFL-P-LKE----RY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~L-P-f~~----~s  161 (171)
                      +..+|||+|||+|..+..+++..+ ..+|+++|++++|++.+++...   ..+  .++.++++|.... + +.+    ++
T Consensus        69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~---~~g~~~~i~~~~~d~~~~~~~~~~~~~~~~  145 (229)
T 2avd_A           69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWR---QAEAEHKIDLRLKPALETLDELLAAGEAGT  145 (229)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHH---HTTCTTTEEEEESCHHHHHHHHHHTTCTTC
T ss_pred             CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HCCCCCeEEEEEcCHHHHHHHHHhcCCCCC
Confidence            457999999999999999987543 5799999999999999987542   123  2578888887533 2 221    78


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      ||+|++.+
T Consensus       146 ~D~v~~d~  153 (229)
T 2avd_A          146 FDVAVVDA  153 (229)
T ss_dssp             EEEEEECS
T ss_pred             ccEEEECC
Confidence            99999864

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=98.82  E-value=1.2e-08  Score=84.82  Aligned_cols=75  Identities=9%  Similarity=-0.060  Sum_probs=60.9

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC-CCCCccceEEEe
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP-LKERYACRFFVL  168 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP-f~~~sfDlV~s~  168 (171)
                      ..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++...   ..+.  .+.++.+|....+ +.++.||+|++.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~~~~~~~~~~D~v~~~  255 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIH---AHDLGGRVEFFEKNLLDARNFEGGAADVVMLN  255 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHH---HTTCGGGEEEEECCTTCGGGGTTCCEEEEEEE
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHH---hcCCCCceEEEeCCcccCcccCCCCccEEEEe
Confidence            68999999999999999998777789999999 889999987542   1232  4889999988876 245679999987


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus       256 ~v  257 (352)
T 3mcz_A          256 DC  257 (352)
T ss_dssp             SC
T ss_pred             cc
Confidence            53

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.81  E-value=3.1e-08  Score=80.61  Aligned_cols=78  Identities=12%  Similarity=-0.010  Sum_probs=53.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC-CHHHHHHHHHhhhh-h-ccCC------CceeEEEccCCCC--CC--
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT-SYDMLKLCKDAQQD-A-HNDN------IETCFVVGDEEFL--PL--  157 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~-S~~mL~~a~~~~~~-~-~~~~------~~~~~~~~D~e~L--Pf--  157 (171)
                      +..+|||||||+|.++..++..+ ..+|+++|+ |++|++.+++.... . ...+      .++.++..+....  .+  
T Consensus        79 ~~~~vLDlG~G~G~~~~~~a~~~-~~~v~~~D~s~~~~~~~a~~n~~~N~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~  157 (281)
T 3bzb_A           79 AGKTVCELGAGAGLVSIVAFLAG-ADQVVATDYPDPEILNSLESNIREHTANSCSSETVKRASPKVVPYRWGDSPDSLQR  157 (281)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHTT-CSEEEEEECSCHHHHHHHHHHHHTTCC----------CCCEEEECCTTSCTHHHHH
T ss_pred             CCCeEEEecccccHHHHHHHHcC-CCEEEEEeCCCHHHHHHHHHHHHHhhhhhcccccCCCCCeEEEEecCCCccHHHHh
Confidence            45799999999999999888753 359999999 89999999875410 0 0111      1355555543332  12  


Q ss_pred             --CCCccceEEEec
Q 030823          158 --KERYACRFFVLA  169 (171)
Q Consensus       158 --~~~sfDlV~s~~  169 (171)
                        ++++||+|+++.
T Consensus       158 ~~~~~~fD~Ii~~d  171 (281)
T 3bzb_A          158 CTGLQRFQVVLLAD  171 (281)
T ss_dssp             HHSCSSBSEEEEES
T ss_pred             hccCCCCCEEEEeC
Confidence              468999999854

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=98.81  E-value=1.7e-08  Score=84.24  Aligned_cols=75  Identities=13%  Similarity=0.144  Sum_probs=58.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++...   ..+.  ++.++.+|... ++++ .||+|++
T Consensus       182 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~---~~~~~~~v~~~~~d~~~-~~~~-~~D~v~~  255 (360)
T 1tw3_A          182 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLK---DEGLSDRVDVVEGDFFE-PLPR-KADAIIL  255 (360)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHH---HTTCTTTEEEEECCTTS-CCSS-CEEEEEE
T ss_pred             ccCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHH---hcCCCCceEEEeCCCCC-CCCC-CccEEEE
Confidence            3467999999999999999988766679999999 999999987542   1232  58889999865 4443 4999998


Q ss_pred             ecc
Q 030823          168 LAL  170 (171)
Q Consensus       168 ~~~  170 (171)
                      ..+
T Consensus       256 ~~v  258 (360)
T 1tw3_A          256 SFV  258 (360)
T ss_dssp             ESC
T ss_pred             ccc
Confidence            653

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=98.80  E-value=1e-08  Score=85.68  Aligned_cols=68  Identities=13%  Similarity=0.139  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++        ..++.++.+|... |+++  ||+|++..+
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~p~--~D~v~~~~~  255 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLSG--------SNNLTYVGGDMFT-SIPN--ADAVLLKYI  255 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------BTTEEEEECCTTT-CCCC--CSEEEEESC
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhccc--------CCCcEEEeccccC-CCCC--ccEEEeehh
Confidence            458999999999999999998766679999999 999988753        1248889999866 6653  999998753

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=98.80  E-value=7.5e-09  Score=82.27  Aligned_cols=76  Identities=14%  Similarity=-0.004  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-C-C-----CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-P-L-----KER  160 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-P-f-----~~~  160 (171)
                      +..+|||||||+|..+..+++..+ .++|+++|++++|++.+++...   ..+.  ++.++++|.... | +     +++
T Consensus        70 ~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~---~~g~~~~i~~~~gda~~~l~~l~~~~~~~~  146 (237)
T 3c3y_A           70 NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIR---KAGVEHKINFIESDAMLALDNLLQGQESEG  146 (237)
T ss_dssp             TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHH---HTTCGGGEEEEESCHHHHHHHHHHSTTCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEEcCHHHHHHHHHhccCCCC
Confidence            457999999999999999987543 6899999999999999987543   2333  478888887543 3 2     268


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|++.+
T Consensus       147 ~fD~I~~d~  155 (237)
T 3c3y_A          147 SYDFGFVDA  155 (237)
T ss_dssp             CEEEEEECS
T ss_pred             CcCEEEECC
Confidence            999999754

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=98.80  E-value=5.7e-09  Score=84.89  Aligned_cols=74  Identities=9%  Similarity=-0.026  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--ccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--HNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...+|||||||+|.++..+.+. + .+|+++|++++|++.|++.....  .....++.++++|+...+   ++||+|++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~-~-~~v~~veid~~~i~~ar~~~~~~~~~~~~~rv~~~~~D~~~~~---~~fD~Ii~d  146 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY-D-THIDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQLLDLDI---KKYDLIFCL  146 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS-S-CEEEEECSCHHHHGGGTTTSTTHHHHHTCTTEEEESSGGGSCC---CCEEEEEES
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC-C-CEEEEEECCHHHHHHHHHHHHhhccccCCCeEEEEechHHHHH---hhCCEEEEC
Confidence            4579999999999999999886 5 89999999999999997632100  012345777889987665   899999986


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      +
T Consensus       147 ~  147 (262)
T 2cmg_A          147 Q  147 (262)
T ss_dssp             S
T ss_pred             C
Confidence            5

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=98.79  E-value=6.6e-09  Score=91.35  Aligned_cols=94  Identities=7%  Similarity=-0.042  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEE
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVV  149 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~  149 (171)
                      ++++..+..+...|.....+..+|||+|||+|..+..|++.. +.+.|+++|+|+.|++.+++...   ..++ ++.+++
T Consensus        98 ~~Qd~~s~l~~~~L~~~~~~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~---r~g~~nv~~~~  174 (479)
T 2frx_A           98 YIQEASSMLPVAALFADGNAPQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANIS---RCGISNVALTH  174 (479)
T ss_dssp             EECCHHHHHHHHHHTTTTCCCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHH---HHTCCSEEEEC
T ss_pred             EEECHHHHHHHHHhCcccCCCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCCcEEEEe
Confidence            445554444434333111266899999999999999998753 34799999999999999987543   1233 577888


Q ss_pred             ccCCCCCC-CCCccceEEEe
Q 030823          150 GDEEFLPL-KERYACRFFVL  168 (171)
Q Consensus       150 ~D~e~LPf-~~~sfDlV~s~  168 (171)
                      +|...++. .+++||+|++.
T Consensus       175 ~D~~~~~~~~~~~fD~Il~D  194 (479)
T 2frx_A          175 FDGRVFGAAVPEMFDAILLD  194 (479)
T ss_dssp             CCSTTHHHHSTTCEEEEEEE
T ss_pred             CCHHHhhhhccccCCEEEEC
Confidence            99988874 57899999984

>3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str}

Probab=98.79  E-value=8.7e-09  Score=88.44  Aligned_cols=93  Identities=8%  Similarity=-0.097  Sum_probs=69.4

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-----------------------------------
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-----------------------------------  114 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-----------------------------------  114 (171)
                      ..++.+.+|..|+.... . .+...+||.+||+|.++...+....                                   
T Consensus       182 ~Apl~e~lAa~ll~l~~-~-~~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~  259 (393)
T 3k0b_A          182 SAPIKETMAAALVLLTS-W-HPDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLAN  259 (393)
T ss_dssp             SCSCCHHHHHHHHHHSC-C-CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred             CCCCcHHHHHHHHHHhC-C-CCCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhc
Confidence            45677788877765432 2 3457899999999999877653211                                   


Q ss_pred             ---CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823          115 ---IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       115 ---~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                         ..+|+|+|+++.|++.|++...   ..++  .+.++++|...++.+ ++||+|++|
T Consensus       260 ~~~~~~V~GvDid~~al~~Ar~Na~---~~gl~~~I~~~~~D~~~~~~~-~~fD~Iv~N  314 (393)
T 3k0b_A          260 YDQPLNIIGGDIDARLIEIAKQNAV---EAGLGDLITFRQLQVADFQTE-DEYGVVVAN  314 (393)
T ss_dssp             TTCCCCEEEEESCHHHHHHHHHHHH---HTTCTTCSEEEECCGGGCCCC-CCSCEEEEC
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECChHhCCCC-CCCCEEEEC
Confidence               1469999999999999987543   2343  378899999999874 599999997

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=98.79  E-value=2.1e-08  Score=84.44  Aligned_cols=69  Identities=16%  Similarity=0.084  Sum_probs=57.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++        ..++.++.+|... |+++  ||+|+++.
T Consensus       208 ~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~~~--~D~v~~~~  275 (372)
T 1fp1_D          208 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAPP--------LSGIEHVGGDMFA-SVPQ--GDAMILKA  275 (372)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCC--EEEEEEES
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhhh--------cCCCEEEeCCccc-CCCC--CCEEEEec
Confidence            3467999999999999999998777679999999 999988743        1348889999987 7764  99999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       276 ~  276 (372)
T 1fp1_D          276 V  276 (372)
T ss_dssp             S
T ss_pred             c
Confidence            4

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=98.77  E-value=3.1e-08  Score=83.62  Aligned_cols=69  Identities=13%  Similarity=0.039  Sum_probs=57.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++        ..++.++.+|... |++++  |+|++..
T Consensus       200 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~D~~~-~~p~~--D~v~~~~  267 (364)
T 3p9c_A          200 EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAPQ--------FPGVTHVGGDMFK-EVPSG--DTILMKW  267 (364)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCCC--SEEEEES
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhhh--------cCCeEEEeCCcCC-CCCCC--CEEEehH
Confidence            3568999999999999999998777779999999 999987742        2468899999887 88755  9999865


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       268 v  268 (364)
T 3p9c_A          268 I  268 (364)
T ss_dssp             C
T ss_pred             H
Confidence            3

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=98.77  E-value=7.2e-09  Score=88.63  Aligned_cols=93  Identities=12%  Similarity=-0.007  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC------------------------------------
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG------------------------------------  113 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~------------------------------------  113 (171)
                      ..++.+.++..|+.....  .+...+||+|||+|.++..++...                                    
T Consensus       176 ~Apl~e~lAa~ll~~~~~--~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~  253 (385)
T 3ldu_A          176 KAPIRETLAAGLIYLTPW--KAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKID  253 (385)
T ss_dssp             CCCCCHHHHHHHHHTSCC--CTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSC
T ss_pred             CCCCcHHHHHHHHHhhCC--CCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhh
Confidence            345666677776654321  345789999999999987775421                                    


Q ss_pred             --CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823          114 --GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       114 --~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                        ...+|+|+|+++.|++.|++...   ..++  .+.+.++|...++. +++||+|++|
T Consensus       254 ~~~~~~V~GvDid~~ai~~Ar~Na~---~~gl~~~i~~~~~D~~~l~~-~~~~D~Iv~N  308 (385)
T 3ldu_A          254 NESKFKIYGYDIDEESIDIARENAE---IAGVDEYIEFNVGDATQFKS-EDEFGFIITN  308 (385)
T ss_dssp             CSCCCCEEEEESCHHHHHHHHHHHH---HHTCGGGEEEEECCGGGCCC-SCBSCEEEEC
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECChhhcCc-CCCCcEEEEC
Confidence              11479999999999999987543   2343  58899999999886 4699999986

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=98.76  E-value=1.6e-09  Score=95.05  Aligned_cols=91  Identities=13%  Similarity=0.024  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEcc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D  151 (171)
                      +++..+..+...+.  ..+..+|||+|||+|..+..++... +.++|+++|+|+.|++.+++...   ..++.+.++++|
T Consensus        85 vQd~ss~l~a~~L~--~~~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~---r~G~~v~~~~~D  159 (464)
T 3m6w_A           85 IQEPSAQAVGVLLD--PKPGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVE---RWGAPLAVTQAP  159 (464)
T ss_dssp             ECCTTTHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH---HHCCCCEEECSC
T ss_pred             EECHHHHHHHHhcC--cCCCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HcCCeEEEEECC
Confidence            44444444433332  2466899999999999999998653 34799999999999999987543   223346778889


Q ss_pred             CCCCC-CCCCccceEEEe
Q 030823          152 EEFLP-LKERYACRFFVL  168 (171)
Q Consensus       152 ~e~LP-f~~~sfDlV~s~  168 (171)
                      ...++ +.+++||+|++.
T Consensus       160 a~~l~~~~~~~FD~Il~D  177 (464)
T 3m6w_A          160 PRALAEAFGTYFHRVLLD  177 (464)
T ss_dssp             HHHHHHHHCSCEEEEEEE
T ss_pred             HHHhhhhccccCCEEEEC
Confidence            88776 357899999974

>3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A*

Probab=98.74  E-value=2.5e-08  Score=82.09  Aligned_cols=78  Identities=13%  Similarity=0.110  Sum_probs=54.7

Q ss_pred             CCCeEEEEcCCC---cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC------CCCCc
Q 030823           91 TFPTALCLGGSL---EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP------LKERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGt---G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP------f~~~s  161 (171)
                      ....+||||||+   |++...+....+..+|+++|.|+.||..|+++...  ....++.|+++|...++      ...++
T Consensus        78 g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~mLa~Ar~~l~~--~~~~~~~~v~aD~~~~~~~l~~~~~~~~  155 (277)
T 3giw_A           78 GIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPIVLTLSQGLLAS--TPEGRTAYVEADMLDPASILDAPELRDT  155 (277)
T ss_dssp             CCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHHHHHTTHHHHCC--CSSSEEEEEECCTTCHHHHHTCHHHHTT
T ss_pred             CCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChHHHHHHHHHhcc--CCCCcEEEEEecccChhhhhcccccccc
Confidence            346899999996   45554444444668999999999999999876421  11235889999998763      11456


Q ss_pred             cc-----eEEEecc
Q 030823          162 AC-----RFFVLAL  170 (171)
Q Consensus       162 fD-----lV~s~~~  170 (171)
                      ||     .|+++++
T Consensus       156 ~D~~~p~av~~~av  169 (277)
T 3giw_A          156 LDLTRPVALTVIAI  169 (277)
T ss_dssp             CCTTSCCEEEEESC
T ss_pred             cCcCCcchHHhhhh
Confidence            66     4777764

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=98.74  E-value=2.3e-08  Score=83.61  Aligned_cols=74  Identities=7%  Similarity=-0.162  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-----CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-----IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRF  165 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-----~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV  165 (171)
                      +..+|||+|||+|.++..+.+..+     ..+++|+|+++.++..|+....   ..+.++.++++|... +..++.||+|
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~---~~g~~~~i~~~D~l~-~~~~~~fD~I  205 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD---LQRQKMTLLHQDGLA-NLLVDPVDVV  205 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH---HHTCCCEEEESCTTS-CCCCCCEEEE
T ss_pred             CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHH---hCCCCceEEECCCCC-ccccCCccEE
Confidence            457899999999999988865332     1689999999999999986432   123456778888755 3356899999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      +++
T Consensus       206 i~N  208 (344)
T 2f8l_A          206 ISD  208 (344)
T ss_dssp             EEE
T ss_pred             EEC
Confidence            997

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=98.74  E-value=2.5e-08  Score=84.23  Aligned_cols=68  Identities=15%  Similarity=0.082  Sum_probs=56.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+.+.++..+++++|+ ++|++.+++        ..++.++.+|... |++++  |+|++..+
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~p~~--D~v~~~~v  270 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAPA--------FSGVEHLGGDMFD-GVPKG--DAIFIKWI  270 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCCC--------CTTEEEEECCTTT-CCCCC--SEEEEESC
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhhh--------cCCCEEEecCCCC-CCCCC--CEEEEech
Confidence            457999999999999999998777789999999 999987742        2458899999876 77654  99998653

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=98.73  E-value=1.2e-08  Score=87.01  Aligned_cols=74  Identities=14%  Similarity=0.029  Sum_probs=59.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCCCCC----CCCccc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEFLPL----KERYAC  163 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~LPf----~~~sfD  163 (171)
                      +..+|||+|||+|.++..++..+ ..+|+++|+|+++++.+++...   ..++   ++.++++|...+..    .+++||
T Consensus       220 ~~~~VLDl~cG~G~~sl~la~~g-~~~V~~vD~s~~al~~a~~n~~---~ngl~~~~v~~~~~D~~~~~~~~~~~~~~fD  295 (396)
T 3c0k_A          220 ENKRVLNCFSYTGGFAVSALMGG-CSQVVSVDTSQEALDIARQNVE---LNKLDLSKAEFVRDDVFKLLRTYRDRGEKFD  295 (396)
T ss_dssp             TTCEEEEESCTTCSHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHH---HTTCCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEeeccCCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH---HcCCCccceEEEECCHHHHHHHHHhcCCCCC
Confidence            56799999999999999998853 4699999999999999987542   2344   68899999876532    257899


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|++.
T Consensus       296 ~Ii~d  300 (396)
T 3c0k_A          296 VIVMD  300 (396)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99985

>3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans}

Probab=98.72  E-value=2e-08  Score=85.94  Aligned_cols=93  Identities=4%  Similarity=-0.126  Sum_probs=68.5

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCC-----------------------------------
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGG-----------------------------------  114 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~-----------------------------------  114 (171)
                      ..++.+.+|..|+.... . .+...+||.+||+|.++...+....                                   
T Consensus       175 ~Apl~e~LAaall~l~~-~-~~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~  252 (384)
T 3ldg_A          175 GAPIKENMAAAIILLSN-W-FPDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQAD  252 (384)
T ss_dssp             -CCCCHHHHHHHHHHTT-C-CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCC
T ss_pred             CCCCcHHHHHHHHHHhC-C-CCCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhh
Confidence            35667777777765432 2 3457899999999999877653211                                   


Q ss_pred             ---CcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEEe
Q 030823          115 ---IEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       115 ---~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                         ..+|+|+|+++.|++.|++...   ..++  .+.++++|...++.+ ++||+|++|
T Consensus       253 ~~~~~~v~GvDid~~al~~Ar~Na~---~~gl~~~I~~~~~D~~~l~~~-~~fD~Iv~N  307 (384)
T 3ldg_A          253 YDIQLDISGFDFDGRMVEIARKNAR---EVGLEDVVKLKQMRLQDFKTN-KINGVLISN  307 (384)
T ss_dssp             TTCCCCEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECCGGGCCCC-CCSCEEEEC
T ss_pred             ccCCceEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECChHHCCcc-CCcCEEEEC
Confidence               1469999999999999987543   2444  478899999999875 599999997

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=98.72  E-value=1.3e-08  Score=77.18  Aligned_cols=66  Identities=14%  Similarity=-0.053  Sum_probs=49.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCC---------cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEE-EccCCCCC---
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGI---------EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV-VGDEEFLP---  156 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~---------~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~-~~D~e~LP---  156 (171)
                      .+..+|||+|||+|.++..+++..+.         .+|+++|+|+.+             ...++.++ .+|....+   
T Consensus        21 ~~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~-------------~~~~~~~~~~~d~~~~~~~~   87 (196)
T 2nyu_A           21 RPGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIF-------------PLEGATFLCPADVTDPRTSQ   87 (196)
T ss_dssp             CTTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCC-------------CCTTCEEECSCCTTSHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhcc-------------cCCCCeEEEeccCCCHHHHH
Confidence            45689999999999999999876433         799999999832             01135667 78876654   


Q ss_pred             -----CCCCccceEEEe
Q 030823          157 -----LKERYACRFFVL  168 (171)
Q Consensus       157 -----f~~~sfDlV~s~  168 (171)
                           +++++||+|+++
T Consensus        88 ~~~~~~~~~~fD~V~~~  104 (196)
T 2nyu_A           88 RILEVLPGRRADVILSD  104 (196)
T ss_dssp             HHHHHSGGGCEEEEEEC
T ss_pred             HHHHhcCCCCCcEEEeC
Confidence                 456799999985

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=98.71  E-value=1.7e-08  Score=86.02  Aligned_cols=75  Identities=13%  Similarity=0.000  Sum_probs=59.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCC----CCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPL----KERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf----~~~sfD  163 (171)
                      .+..+|||+|||+|.++..++.. +..+|+++|+|+.|++.+++...   ..++  ++.++++|...++.    ++++||
T Consensus       216 ~~~~~VLDl~~G~G~~~~~la~~-g~~~v~~vD~s~~~l~~a~~n~~---~n~~~~~v~~~~~d~~~~~~~~~~~~~~fD  291 (396)
T 2as0_A          216 QPGDRVLDVFTYTGGFAIHAAIA-GADEVIGIDKSPRAIETAKENAK---LNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  291 (396)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH---HTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             hCCCeEEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH---HcCCCccceEEECCHHHHHHHHHhhCCCCC
Confidence            35689999999999999999875 35699999999999999987542   2333  58899999866532    367999


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|++.
T Consensus       292 ~Vi~d  296 (396)
T 2as0_A          292 IVVLD  296 (396)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99984

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=98.71  E-value=6.3e-09  Score=88.33  Aligned_cols=80  Identities=10%  Similarity=-0.078  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e  153 (171)
                      +.+++.|++.+..  .+..+|||+|||+|.++..+.++. +..+++|+|+++.|++.|           .++.++++|..
T Consensus        25 ~~l~~~~~~~~~~--~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a-----------~~~~~~~~D~~   91 (421)
T 2ih2_A           25 PEVVDFMVSLAEA--PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP-----------PWAEGILADFL   91 (421)
T ss_dssp             HHHHHHHHHHCCC--CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC-----------TTEEEEESCGG
T ss_pred             HHHHHHHHHhhcc--CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC-----------CCCcEEeCChh
Confidence            3445555554431  345699999999999999998643 347999999999998765           13667888887


Q ss_pred             CCCCCCCccceEEEe
Q 030823          154 FLPLKERYACRFFVL  168 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~  168 (171)
                      ..+. ++.||+|++|
T Consensus        92 ~~~~-~~~fD~Ii~N  105 (421)
T 2ih2_A           92 LWEP-GEAFDLILGN  105 (421)
T ss_dssp             GCCC-SSCEEEEEEC
T ss_pred             hcCc-cCCCCEEEEC
Confidence            7653 5799999996

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=98.71  E-value=3.8e-08  Score=82.36  Aligned_cols=70  Identities=9%  Similarity=0.044  Sum_probs=57.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      .+..+|||+|||+|.++.. +.  +..+|+++|+|+.+++.+++...   ..+.  ++.++++|...++   ++||+|++
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~--~~~~V~~vD~s~~ai~~a~~n~~---~n~l~~~v~~~~~D~~~~~---~~fD~Vi~  264 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK--NAKKIYAIDINPHAIELLKKNIK---LNKLEHKIIPILSDVREVD---VKGNRVIM  264 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT--TSSEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEESCGGGCC---CCEEEEEE
T ss_pred             CCCCEEEEccCccCHHHHh-cc--CCCEEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEECChHHhc---CCCcEEEE
Confidence            3568999999999999998 76  46799999999999999987542   2332  5888999988776   89999998


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      +
T Consensus       265 d  265 (336)
T 2yx1_A          265 N  265 (336)
T ss_dssp             C
T ss_pred             C
Confidence            6

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=98.70  E-value=5.1e-09  Score=86.95  Aligned_cols=70  Identities=10%  Similarity=-0.035  Sum_probs=51.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC----CHHHHHHHHHhhhhhccCC-CceeEEEc-cCCCCCCCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT----SYDMLKLCKDAQQDAHNDN-IETCFVVG-DEEFLPLKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~----S~~mL~~a~~~~~~~~~~~-~~~~~~~~-D~e~LPf~~~sfD  163 (171)
                      ++..+|||||||+|.++..+++.   ++|+++|+    +++|++....     ...+ ..+.++++ |...+|  +++||
T Consensus        81 ~~g~~VLDlGcG~G~~s~~la~~---~~V~gvD~~~~~~~~~~~~~~~-----~~~~~~~v~~~~~~D~~~l~--~~~fD  150 (305)
T 2p41_A           81 TPEGKVVDLGCGRGGWSYYCGGL---KNVREVKGLTKGGPGHEEPIPM-----STYGWNLVRLQSGVDVFFIP--PERCD  150 (305)
T ss_dssp             CCCEEEEEETCTTSHHHHHHHTS---TTEEEEEEECCCSTTSCCCCCC-----CSTTGGGEEEECSCCTTTSC--CCCCS
T ss_pred             CCCCEEEEEcCCCCHHHHHHHhc---CCEEEEeccccCchhHHHHHHh-----hhcCCCCeEEEeccccccCC--cCCCC
Confidence            45679999999999999999985   58999999    6665532110     0111 24777888 777665  57999


Q ss_pred             eEEEec
Q 030823          164 RFFVLA  169 (171)
Q Consensus       164 lV~s~~  169 (171)
                      +|+|..
T Consensus       151 ~V~sd~  156 (305)
T 2p41_A          151 TLLCDI  156 (305)
T ss_dssp             EEEECC
T ss_pred             EEEECC
Confidence            999953

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=98.69  E-value=3.5e-09  Score=86.01  Aligned_cols=73  Identities=11%  Similarity=0.046  Sum_probs=57.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH-------HHHHHHHHhhhhhccCCC--ceeEEEccCCCC-C-CCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY-------DMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-P-LKE  159 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~-------~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-P-f~~  159 (171)
                      +..+|||+|||+|.++..|+..  ..+|+++|+|+       +|++.+++...   ..+.  .+.++++|.+.+ + +++
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~--g~~V~~vD~s~~~~~ll~~~l~~a~~n~~---~~~~~~ri~~~~~d~~~~l~~~~~  157 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASL--GLTVTAFEQHPAVACLLSDGIRRALLNPE---TQDTAARINLHFGNAAEQMPALVK  157 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHT--TCCEEEEECCHHHHHHHHHHHHHHHHSHH---HHHHHTTEEEEESCHHHHHHHHHH
T ss_pred             CcCeEEEeeCccCHHHHHHHHh--CCEEEEEECChhhhHHHHHHHHHHHhHHH---hhCCccCeEEEECCHHHHHHhhhc
Confidence            4578999999999999999885  36999999999       99999875321   1122  378899998764 4 555


Q ss_pred             --CccceEEEe
Q 030823          160 --RYACRFFVL  168 (171)
Q Consensus       160 --~sfDlV~s~  168 (171)
                        ++||+|+++
T Consensus       158 ~~~~fD~V~~d  168 (258)
T 2r6z_A          158 TQGKPDIVYLD  168 (258)
T ss_dssp             HHCCCSEEEEC
T ss_pred             cCCCccEEEEC
Confidence              799999985

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=98.69  E-value=3e-08  Score=85.12  Aligned_cols=74  Identities=9%  Similarity=-0.024  Sum_probs=55.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-CCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-PLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-Pf~~~sfDlV~s~  168 (171)
                      .+..+|||+|||||.++..++..+  ..|+++|+|+.|++.+++...   ..++...+.++|...+ +..++.||+|+++
T Consensus       213 ~~g~~VLDlg~GtG~~sl~~a~~g--a~V~avDis~~al~~a~~n~~---~ng~~~~~~~~D~~~~l~~~~~~fD~Ii~d  287 (393)
T 4dmg_A          213 RPGERVLDVYSYVGGFALRAARKG--AYALAVDKDLEALGVLDQAAL---RLGLRVDIRHGEALPTLRGLEGPFHHVLLD  287 (393)
T ss_dssp             CTTCEEEEESCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---HHTCCCEEEESCHHHHHHTCCCCEEEEEEC
T ss_pred             cCCCeEEEcccchhHHHHHHHHcC--CeEEEEECCHHHHHHHHHHHH---HhCCCCcEEEccHHHHHHHhcCCCCEEEEC
Confidence            356899999999999999998853  459999999999999987542   2233344668887654 2223449999985

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=98.69  E-value=5.4e-08  Score=81.47  Aligned_cols=68  Identities=18%  Similarity=0.118  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+.+.++..+++++|+ +.|++.+++        ..++.++.+|... |++  .||+|+++.+
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~--------~~~v~~~~~d~~~-~~~--~~D~v~~~~v  260 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLTG--------NENLNFVGGDMFK-SIP--SADAVLLKWV  260 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCCC--------CSSEEEEECCTTT-CCC--CCSEEEEESC
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhccc--------CCCcEEEeCccCC-CCC--CceEEEEccc
Confidence            458999999999999999998777679999999 799977642        1248889999877 775  4999998753

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=98.68  E-value=4.8e-08  Score=82.65  Aligned_cols=72  Identities=10%  Similarity=0.020  Sum_probs=56.4

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCC---------
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKE---------  159 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~---------  159 (171)
                      ..+|||+|||+|.++..+++.  ..+|+++|+|++|++.|++...   ..++ ++.|+++|.+.+.  +.+         
T Consensus       214 ~~~vLDl~cG~G~~~l~la~~--~~~V~gvd~~~~ai~~a~~n~~---~ng~~~v~~~~~d~~~~~~~~~~~~~~~~l~~  288 (369)
T 3bt7_A          214 KGDLLELYCGNGNFSLALARN--FDRVLATEIAKPSVAAAQYNIA---ANHIDNVQIIRMAAEEFTQAMNGVREFNRLQG  288 (369)
T ss_dssp             CSEEEEESCTTSHHHHHHGGG--SSEEEEECCCHHHHHHHHHHHH---HTTCCSEEEECCCSHHHHHHHSSCCCCTTGGG
T ss_pred             CCEEEEccCCCCHHHHHHHhc--CCEEEEEECCHHHHHHHHHHHH---HcCCCceEEEECCHHHHHHHHhhccccccccc
Confidence            478999999999999999873  4799999999999999986442   2333 6888999987652  222         


Q ss_pred             -----CccceEEEe
Q 030823          160 -----RYACRFFVL  168 (171)
Q Consensus       160 -----~sfDlV~s~  168 (171)
                           ++||+|+..
T Consensus       289 ~~~~~~~fD~Vv~d  302 (369)
T 3bt7_A          289 IDLKSYQCETIFVD  302 (369)
T ss_dssp             SCGGGCCEEEEEEC
T ss_pred             cccccCCCCEEEEC
Confidence                 389999874

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=98.67  E-value=2.3e-08  Score=86.45  Aligned_cols=75  Identities=15%  Similarity=0.061  Sum_probs=58.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCC-CC-CCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFL-PL-KERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~L-Pf-~~~sfDlV~s  167 (171)
                      +..+|||+|||+|..+..|++.  ..+|+++|+|++|++.+++..... ..+. ++.++++|.... +. ++++||+|++
T Consensus        93 ~g~~VLDLgcG~G~~al~LA~~--g~~V~~VD~s~~~l~~Ar~N~~~~-~~gl~~i~~i~~Da~~~L~~~~~~~fDvV~l  169 (410)
T 3ll7_A           93 EGTKVVDLTGGLGIDFIALMSK--ASQGIYIERNDETAVAARHNIPLL-LNEGKDVNILTGDFKEYLPLIKTFHPDYIYV  169 (410)
T ss_dssp             TTCEEEESSCSSSHHHHHHHTT--CSEEEEEESCHHHHHHHHHHHHHH-SCTTCEEEEEESCGGGSHHHHHHHCCSEEEE
T ss_pred             CCCEEEEeCCCchHHHHHHHhc--CCEEEEEECCHHHHHHHHHhHHHh-ccCCCcEEEEECcHHHhhhhccCCCceEEEE
Confidence            3689999999999999999874  379999999999999998754210 0133 688999998764 43 3578999997


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus       170 D  170 (410)
T 3ll7_A          170 D  170 (410)
T ss_dssp             C
T ss_pred             C
Confidence            4

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=98.65  E-value=2.5e-08  Score=85.01  Aligned_cols=74  Identities=14%  Similarity=-0.071  Sum_probs=57.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCC-CCC---CCCccc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEF-LPL---KERYAC  163 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~-LPf---~~~sfD  163 (171)
                      +..+|||+|||+|.++..++..+ ..+|+++|+|++|++.|++...   ..++   ++.++++|+.. ++.   ..++||
T Consensus       212 ~~~~VLDl~cGtG~~sl~la~~g-a~~V~~vD~s~~al~~A~~N~~---~n~~~~~~v~~~~~D~~~~l~~~~~~~~~fD  287 (385)
T 2b78_A          212 AGKTVLNLFSYTAAFSVAAAMGG-AMATTSVDLAKRSRALSLAHFE---ANHLDMANHQLVVMDVFDYFKYARRHHLTYD  287 (385)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHTT-BSEEEEEESCTTHHHHHHHHHH---HTTCCCTTEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCeEEEEeeccCHHHHHHHHCC-CCEEEEEECCHHHHHHHHHHHH---HcCCCccceEEEECCHHHHHHHHHHhCCCcc
Confidence            45799999999999999998743 4599999999999999987542   2232   57899999765 332   246899


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|++.
T Consensus       288 ~Ii~D  292 (385)
T 2b78_A          288 IIIID  292 (385)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            99974

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=98.64  E-value=7.5e-08  Score=79.21  Aligned_cols=77  Identities=13%  Similarity=0.056  Sum_probs=61.2

Q ss_pred             cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceE
Q 030823           88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRF  165 (171)
Q Consensus        88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV  165 (171)
                      ...+..+|||+|||+|.++..++..+ ..+|+++|+++.+++.+++...   ..++  .+.++.+|...++. .+.||.|
T Consensus       122 ~~~~g~~VlD~~aG~G~~~i~~a~~g-~~~V~avD~np~a~~~~~~N~~---~N~v~~~v~~~~~D~~~~~~-~~~~D~V  196 (278)
T 3k6r_A          122 VAKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIH---LNKVEDRMSAYNMDNRDFPG-ENIADRI  196 (278)
T ss_dssp             HCCTTCEEEETTCTTTTTTHHHHHHT-CCEEEEECCCHHHHHHHHHHHH---HTTCTTTEEEECSCTTTCCC-CSCEEEE
T ss_pred             hcCCCCEEEEecCcCcHHHHHHHHhc-CCeEEEEECCHHHHHHHHHHHH---HcCCCCcEEEEeCcHHHhcc-ccCCCEE
Confidence            34567999999999999999888754 3689999999999999986432   2333  47778899988874 6899999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +++-
T Consensus       197 i~~~  200 (278)
T 3k6r_A          197 LMGY  200 (278)
T ss_dssp             EECC
T ss_pred             EECC
Confidence            9863

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.62  E-value=4.5e-08  Score=89.65  Aligned_cols=74  Identities=12%  Similarity=-0.026  Sum_probs=59.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---ceeEEEccCCC-CCCCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      +..+|||+|||||.++..++.. ...+|+++|+|+.|++.+++...   ..++   ++.++++|... ++..+++||+|+
T Consensus       539 ~g~~VLDlg~GtG~~sl~aa~~-ga~~V~aVD~s~~al~~a~~N~~---~ngl~~~~v~~i~~D~~~~l~~~~~~fD~Ii  614 (703)
T 3v97_A          539 KGKDFLNLFSYTGSATVHAGLG-GARSTTTVDMSRTYLEWAERNLR---LNGLTGRAHRLIQADCLAWLREANEQFDLIF  614 (703)
T ss_dssp             TTCEEEEESCTTCHHHHHHHHT-TCSEEEEEESCHHHHHHHHHHHH---HTTCCSTTEEEEESCHHHHHHHCCCCEEEEE
T ss_pred             CCCcEEEeeechhHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHH---HcCCCccceEEEecCHHHHHHhcCCCccEEE
Confidence            4579999999999999998874 34689999999999999987542   2232   48889999865 555678999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      +.
T Consensus       615 ~D  616 (703)
T 3v97_A          615 ID  616 (703)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=98.62  E-value=2.9e-08  Score=84.28  Aligned_cols=73  Identities=10%  Similarity=-0.021  Sum_probs=58.2

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCC----CCCccceE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPL----KERYACRF  165 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf----~~~sfDlV  165 (171)
                      +..+|||+|||+|.++..++..  ..+|+++|+|+.+++.+++...   ..+. ++.++++|.+.+..    ++++||+|
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~--~~~v~~vD~s~~~~~~a~~n~~---~n~~~~~~~~~~d~~~~~~~~~~~~~~fD~I  283 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG--FREVVAVDSSAEALRRAEENAR---LNGLGNVRVLEANAFDLLRRLEKEGERFDLV  283 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH--EEEEEEEESCHHHHHHHHHHHH---HTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeEEEeeeccCHHHHHHHHh--CCEEEEEECCHHHHHHHHHHHH---HcCCCCceEEECCHHHHHHHHHhcCCCeeEE
Confidence            4578999999999999999874  4799999999999999987542   2333 37889999876532    26799999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      ++.
T Consensus       284 i~d  286 (382)
T 1wxx_A          284 VLD  286 (382)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38

Probab=98.61  E-value=1.3e-07  Score=78.74  Aligned_cols=76  Identities=7%  Similarity=-0.087  Sum_probs=60.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCC---Cccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKE---RYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~---~sfDl  164 (171)
                      .+..+|||+|||+|..+..+++. .+.++|+++|+++++++.+++...   ..++ ++.++.+|...++...   ++||.
T Consensus       101 ~~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~~n~~---r~g~~~v~~~~~D~~~~~~~~~~~~~fD~  177 (309)
T 2b9e_A          101 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA---RAGVSCCELAEEDFLAVSPSDPRYHEVHY  177 (309)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CCCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCeEEEEeCChHhcCccccccCCCCE
Confidence            45689999999999999998864 245799999999999999987543   2343 5788899988776432   58999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |++.
T Consensus       178 Vl~D  181 (309)
T 2b9e_A          178 ILLD  181 (309)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9973

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=98.60  E-value=9.5e-09  Score=89.95  Aligned_cols=92  Identities=13%  Similarity=-0.038  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc
Q 030823           73 FVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG  150 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~  150 (171)
                      +++..+..+...+.  ..+..+|||+|||+|..+..++... +.++|+++|+|+.+++.+++...   ..++ ++.++.+
T Consensus        89 vQd~ss~l~~~~L~--~~~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~---r~g~~nv~v~~~  163 (456)
T 3m4x_A           89 SQEPSAMIVGTAAA--AKPGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIE---RWGVSNAIVTNH  163 (456)
T ss_dssp             ECCTTTHHHHHHHC--CCTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHH---HHTCSSEEEECC
T ss_pred             EECHHHHHHHHHcC--CCCCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHH---HcCCCceEEEeC
Confidence            34444444433332  2456899999999999999887642 34799999999999999987543   2233 4777888


Q ss_pred             cCCCCC-CCCCccceEEEec
Q 030823          151 DEEFLP-LKERYACRFFVLA  169 (171)
Q Consensus       151 D~e~LP-f~~~sfDlV~s~~  169 (171)
                      |...++ ..+++||+|++.+
T Consensus       164 Da~~l~~~~~~~FD~Il~Da  183 (456)
T 3m4x_A          164 APAELVPHFSGFFDRIVVDA  183 (456)
T ss_dssp             CHHHHHHHHTTCEEEEEEEC
T ss_pred             CHHHhhhhccccCCEEEECC
Confidence            887775 3468999999854

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=98.57  E-value=1.1e-07  Score=79.25  Aligned_cols=74  Identities=11%  Similarity=-0.021  Sum_probs=53.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..+.+.++..+++++|+ ++++.  ++.... .....++.++.+|.. .|++  +||+|++..
T Consensus       183 ~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~--~~~~~~-~~~~~~v~~~~~d~~-~~~p--~~D~v~~~~  255 (348)
T 3lst_A          183 PATGTVADVGGGRGGFLLTVLREHPGLQGVLLDR-AEVVA--RHRLDA-PDVAGRWKVVEGDFL-REVP--HADVHVLKR  255 (348)
T ss_dssp             CSSEEEEEETCTTSHHHHHHHHHCTTEEEEEEEC-HHHHT--TCCCCC-GGGTTSEEEEECCTT-TCCC--CCSEEEEES
T ss_pred             cCCceEEEECCccCHHHHHHHHHCCCCEEEEecC-HHHhh--cccccc-cCCCCCeEEEecCCC-CCCC--CCcEEEEeh
Confidence            3467999999999999999988777779999999 45555  211100 011225888999985 4554  999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       256 v  256 (348)
T 3lst_A          256 I  256 (348)
T ss_dssp             C
T ss_pred             h
Confidence            3

>2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45

Probab=98.46  E-value=3.4e-07  Score=79.22  Aligned_cols=88  Identities=9%  Similarity=-0.088  Sum_probs=62.2

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC-------------CCcEEEEEeCCHHHHHHHHHhhhhhccC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG-------------GIEKLIMMDTSYDMLKLCKDAQQDAHND  141 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~-------------~~~~v~gvD~S~~mL~~a~~~~~~~~~~  141 (171)
                      +.+++.|++.+.  ..+..+|||.|||+|.++..+.+..             ...+++|+|+++.|+..|+....   ..
T Consensus       157 ~~v~~~mv~~l~--~~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~---l~  231 (445)
T 2okc_A          157 RPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY---LH  231 (445)
T ss_dssp             HHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH---HT
T ss_pred             HHHHHHHHHHhC--CCCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHH---Hh
Confidence            445555555442  2345689999999999987776421             23579999999999999975332   12


Q ss_pred             CC---ceeEEEccCCCCCCCCCccceEEEe
Q 030823          142 NI---ETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       142 ~~---~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      +.   +..+.++|.-..+.. +.||+|++|
T Consensus       232 g~~~~~~~i~~gD~l~~~~~-~~fD~Iv~N  260 (445)
T 2okc_A          232 GIGTDRSPIVCEDSLEKEPS-TLVDVILAN  260 (445)
T ss_dssp             TCCSSCCSEEECCTTTSCCS-SCEEEEEEC
T ss_pred             CCCcCCCCEeeCCCCCCccc-CCcCEEEEC
Confidence            33   456788998777654 489999997

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=98.45  E-value=4.8e-08  Score=73.31  Aligned_cols=58  Identities=9%  Similarity=-0.131  Sum_probs=47.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV~  166 (171)
                      .+..+|||+|||+                +++|+|++|++.++++.     . .++.++++|.+.+|+   ++++||+|+
T Consensus        11 ~~g~~vL~~~~g~----------------v~vD~s~~ml~~a~~~~-----~-~~~~~~~~d~~~~~~~~~~~~~fD~V~   68 (176)
T 2ld4_A           11 SAGQFVAVVWDKS----------------SPVEALKGLVDKLQALT-----G-NEGRVSVENIKQLLQSAHKESSFDIIL   68 (176)
T ss_dssp             CTTSEEEEEECTT----------------SCHHHHHHHHHHHHHHT-----T-TTSEEEEEEGGGGGGGCCCSSCEEEEE
T ss_pred             CCCCEEEEecCCc----------------eeeeCCHHHHHHHHHhc-----c-cCcEEEEechhcCccccCCCCCEeEEE
Confidence            4668999999996                23899999999998753     1 137889999999988   899999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      ++.
T Consensus        69 ~~~   71 (176)
T 2ld4_A           69 SGL   71 (176)
T ss_dssp             ECC
T ss_pred             ECC
Confidence            864

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=98.41  E-value=4.5e-07  Score=83.06  Aligned_cols=94  Identities=12%  Similarity=-0.018  Sum_probs=69.2

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC------------------------------------
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG------------------------------------  113 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~------------------------------------  113 (171)
                      ..++.+.+|..|+.... . .+...+||.+||+|.++...+...                                    
T Consensus       171 ~apl~e~LAa~ll~~~~-~-~~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~  248 (703)
T 3v97_A          171 IAPIKETLAAAIVMRSG-W-QPGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRA  248 (703)
T ss_dssp             CCSSCHHHHHHHHHHTT-C-CTTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhhC-C-CCCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            45677788887766543 2 345789999999999987665310                                    


Q ss_pred             ------CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC--CCCCCccceEEEe
Q 030823          114 ------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL--PLKERYACRFFVL  168 (171)
Q Consensus       114 ------~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L--Pf~~~sfDlV~s~  168 (171)
                            +..+|+|+|+++.|++.|++...   ..++  .+.+.++|...+  |..+++||+|++|
T Consensus       249 ~~~~~~~~~~i~G~Did~~av~~A~~N~~---~agv~~~i~~~~~D~~~~~~~~~~~~~d~Iv~N  310 (703)
T 3v97_A          249 RKGLAEYSSHFYGSDSDARVIQRARTNAR---LAGIGELITFEVKDVAQLTNPLPKGPYGTVLSN  310 (703)
T ss_dssp             HHHHHHCCCCEEEEESCHHHHHHHHHHHH---HTTCGGGEEEEECCGGGCCCSCTTCCCCEEEEC
T ss_pred             hhccccCCccEEEEECCHHHHHHHHHHHH---HcCCCCceEEEECChhhCccccccCCCCEEEeC
Confidence                  11479999999999999987442   3455  378899998877  4445599999997

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=98.39  E-value=1.8e-06  Score=72.51  Aligned_cols=76  Identities=20%  Similarity=0.131  Sum_probs=59.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ....+|+|||||+|.++..+.++++.-+++..|+ |++++.+++....  ....++.++.+|....|++  .+|+|++..
T Consensus       178 ~~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~--~~~~rv~~~~gD~~~~~~~--~~D~~~~~~  252 (353)
T 4a6d_A          178 SVFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF--QEEEQIDFQEGDFFKDPLP--EADLYILAR  252 (353)
T ss_dssp             GGCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC----CCSEEEEESCTTTSCCC--CCSEEEEES
T ss_pred             ccCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh--cccCceeeecCccccCCCC--CceEEEeee
Confidence            3457999999999999999998888889999998 8899999875421  1123588999998766654  479998865


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       253 v  253 (353)
T 4a6d_A          253 V  253 (353)
T ss_dssp             S
T ss_pred             e
Confidence            3

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=98.26  E-value=1.1e-06  Score=71.56  Aligned_cols=74  Identities=11%  Similarity=0.043  Sum_probs=52.7

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc-c---CC---CceeEEEccCCC-CCCCCCccce
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-N---DN---IETCFVVGDEEF-LPLKERYACR  164 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~-~---~~---~~~~~~~~D~e~-LPf~~~sfDl  164 (171)
                      .+|||+|||+|..+..++.++  .+|+++|.++.+...+++...... +   .+   .++.++++|.+. ++..+++||+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g--~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~~~~fDv  167 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQV  167 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCCSE
T ss_pred             CEEEEcCCcCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhCcccCCE
Confidence            799999999999999998754  589999999988655544221100 1   11   247789999765 4433347999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+..
T Consensus       168 V~lD  171 (258)
T 2oyr_A          168 VYLD  171 (258)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9874

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=98.23  E-value=1.5e-06  Score=74.12  Aligned_cols=76  Identities=16%  Similarity=-0.049  Sum_probs=57.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccC--------------CC-ceeEEEccCCCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND--------------NI-ETCFVVGDEEFL  155 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~--------------~~-~~~~~~~D~e~L  155 (171)
                      +..+|||+|||+|.++..++...+..+|+++|+++++++.+++....  +.              +. ++.++.+|+..+
T Consensus        47 ~~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~--n~~~~~~~~~~~~~~~gl~~i~v~~~Da~~~  124 (378)
T 2dul_A           47 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVML--NFDGELRESKGRAILKGEKTIVINHDDANRL  124 (378)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHH--HCCSCCEECSSEEEEESSSEEEEEESCHHHH
T ss_pred             CCCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH--hcccccccccccccccCCCceEEEcCcHHHH
Confidence            45789999999999999998764446899999999999999875431  10              33 377888887654


Q ss_pred             CC-CCCccceEEEe
Q 030823          156 PL-KERYACRFFVL  168 (171)
Q Consensus       156 Pf-~~~sfDlV~s~  168 (171)
                      .. ..+.||+|+..
T Consensus       125 ~~~~~~~fD~I~lD  138 (378)
T 2dul_A          125 MAERHRYFHFIDLD  138 (378)
T ss_dssp             HHHSTTCEEEEEEC
T ss_pred             HHhccCCCCEEEeC
Confidence            31 24689999964

>4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A*

Probab=98.19  E-value=5.2e-06  Score=70.90  Aligned_cols=69  Identities=13%  Similarity=-0.053  Sum_probs=55.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++..+||||||++|.++..+.+++  ++|++||+.+ |-....        ....+.++.+|...+..+.+.||+|+|-
T Consensus       209 l~~G~~vlDLGAaPGGWT~~l~~rg--~~V~aVD~~~-l~~~l~--------~~~~V~~~~~d~~~~~~~~~~~D~vvsD  277 (375)
T 4auk_A          209 LANGMWAVDLGACPGGWTYQLVKRN--MWVYSVDNGP-MAQSLM--------DTGQVTWLREDGFKFRPTRSNISWMVCD  277 (375)
T ss_dssp             SCTTCEEEEETCTTCHHHHHHHHTT--CEEEEECSSC-CCHHHH--------TTTCEEEECSCTTTCCCCSSCEEEEEEC
T ss_pred             CCCCCEEEEeCcCCCHHHHHHHHCC--CEEEEEEhhh-cChhhc--------cCCCeEEEeCccccccCCCCCcCEEEEc
Confidence            4678999999999999999999854  7999999873 333322        2345788999998888778899999983

>2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A*

Probab=98.17  E-value=9.5e-07  Score=73.02  Aligned_cols=61  Identities=11%  Similarity=-0.045  Sum_probs=45.4

Q ss_pred             cCCCeEEEEcCCC------cHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE-EEccCCCCCCCCCc
Q 030823           90 KTFPTALCLGGSL------EAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF-VVGDEEFLPLKERY  161 (171)
Q Consensus        90 ~~~~~vLDlGcGt------G~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~-~~~D~e~LPf~~~s  161 (171)
                      ++..+|||+|||+      |.  ..+++.. +.++|+|+|+|+. +            .  ++.+ +++|+..++++ ++
T Consensus        62 ~~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v------------~--~v~~~i~gD~~~~~~~-~~  123 (290)
T 2xyq_A           62 PYNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V------------S--DADSTLIGDCATVHTA-NK  123 (290)
T ss_dssp             CTTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B------------C--SSSEEEESCGGGCCCS-SC
T ss_pred             CCCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C------------C--CCEEEEECccccCCcc-Cc
Confidence            4567999999944      65  3333322 3579999999987 1            1  3667 99999998874 78


Q ss_pred             cceEEEe
Q 030823          162 ACRFFVL  168 (171)
Q Consensus       162 fDlV~s~  168 (171)
                      ||+|+|+
T Consensus       124 fD~Vvsn  130 (290)
T 2xyq_A          124 WDLIISD  130 (290)
T ss_dssp             EEEEEEC
T ss_pred             ccEEEEc
Confidence            9999996

>3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A*

Probab=98.14  E-value=2.2e-06  Score=70.39  Aligned_cols=76  Identities=7%  Similarity=-0.099  Sum_probs=52.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++..+|||||||+|.++...++..+...+.++|++.++......    ....+.++..+..+.+..+++++.||+|+|.
T Consensus        72 l~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~~pi~----~~~~g~~ii~~~~~~dv~~l~~~~~DlVlsD  147 (277)
T 3evf_A           72 VKLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHEKPMN----VQSLGWNIITFKDKTDIHRLEPVKCDTLLCD  147 (277)
T ss_dssp             SCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCCCCCC----CCBTTGGGEEEECSCCTTTSCCCCCSEEEEC
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcccccc----cCcCCCCeEEEeccceehhcCCCCccEEEec
Confidence            345679999999999999988765456789999998654111100    0011224555667777788889999999985

>3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus}

Probab=98.10  E-value=1.5e-05  Score=71.06  Aligned_cols=91  Identities=8%  Similarity=-0.155  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHhc--ccCCCeEEEEcCCCcHHHHHHhhc---CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC---cee
Q 030823           75 DAVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLLRGR---GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI---ETC  146 (171)
Q Consensus        75 ~~va~~l~~rL~~i--~~~~~~vLDlGcGtG~l~~~L~~~---~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~---~~~  146 (171)
                      ..+++.|++.+...  ..+..+|+|.+||||.+...+.+.   .....++|+|+++.++..|+....   ..++   +..
T Consensus       203 ~~Vv~lmv~ll~~~~~~~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~---l~gi~~~~~~  279 (542)
T 3lkd_A          203 QPVAKLMTQIAFLGREDKQGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI---LHGVPIENQF  279 (542)
T ss_dssp             HHHHHHHHHHHHTTCTTCTTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH---HTTCCGGGEE
T ss_pred             HHHHHHHHHHHhcccCCCCCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH---HcCCCcCccc
Confidence            44555555554421  235679999999999987766543   224689999999999999975321   2333   355


Q ss_pred             EEEccCCCC--C-CCCCccceEEEe
Q 030823          147 FVVGDEEFL--P-LKERYACRFFVL  168 (171)
Q Consensus       147 ~~~~D~e~L--P-f~~~sfDlV~s~  168 (171)
                      +.++|.-..  | +++..||+|++|
T Consensus       280 I~~gDtL~~d~p~~~~~~fD~IvaN  304 (542)
T 3lkd_A          280 LHNADTLDEDWPTQEPTNFDGVLMN  304 (542)
T ss_dssp             EEESCTTTSCSCCSSCCCBSEEEEC
T ss_pred             eEecceecccccccccccccEEEec
Confidence            678886655  4 457899999987

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=98.06  E-value=1e-05  Score=73.38  Aligned_cols=107  Identities=14%  Similarity=0.077  Sum_probs=67.4

Q ss_pred             ccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccC--CCeEEEEcCCCcHHHHHHh---hcCC-CcEEEE
Q 030823           47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKT--FPTALCLGGSLEAVRRLLR---GRGG-IEKLIM  120 (171)
Q Consensus        47 ~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~--~~~vLDlGcGtG~l~~~L~---~~~~-~~~v~g  120 (171)
                      .+++|.+...++...+            +.+.+.|.+++..-...  ...|||+|||+|-+...-.   .... .-+|++
T Consensus       323 tYevFEkD~vKy~~Ye------------~AI~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyA  390 (637)
T 4gqb_A          323 TYEVFEKDPIKYSQYQ------------QAIYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYA  390 (637)
T ss_dssp             HHHHHTTCHHHHHHHH------------HHHHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred             hhhhhcCChhhHHHHH------------HHHHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEE
Confidence            4567777666665433            33445555654432222  2469999999998843332   2221 127899


Q ss_pred             EeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823          121 MDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       121 vD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ||-|+ |...+.+.... +.-+-.++.+.+|+|.+.+| +.+|+|||=
T Consensus       391 VEknp-~A~~a~~~v~~-N~~~dkVtVI~gd~eev~LP-EKVDIIVSE  435 (637)
T 4gqb_A          391 VEKNP-NAVVTLENWQF-EEWGSQVTVVSSDMREWVAP-EKADIIVSE  435 (637)
T ss_dssp             EESCH-HHHHHHHHHHH-HTTGGGEEEEESCTTTCCCS-SCEEEEECC
T ss_pred             EECCH-HHHHHHHHHHh-ccCCCeEEEEeCcceeccCC-cccCEEEEE
Confidence            99997 56566553321 12223588899999999874 789999984

>3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus}

Probab=98.02  E-value=3.6e-06  Score=69.27  Aligned_cols=76  Identities=5%  Similarity=-0.101  Sum_probs=51.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+..+|||||||+|.+++......+...|+|+|++..|...+..    ....+.++.....+.+...++++.+|+|+|-
T Consensus        88 Lk~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~~~~pi~----~~~~g~~ii~~~~~~dv~~l~~~~~DvVLSD  163 (282)
T 3gcz_A           88 VKPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQGHEKPIM----RTTLGWNLIRFKDKTDVFNMEVIPGDTLLCD  163 (282)
T ss_dssp             CCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC----CCBTTGGGEEEECSCCGGGSCCCCCSEEEEC
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCccccccc----cccCCCceEEeeCCcchhhcCCCCcCEEEec
Confidence            346679999999999999987765566789999998765322210    0011234444444445556778999999984

>1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23

Probab=98.01  E-value=2e-05  Score=65.01  Aligned_cols=70  Identities=13%  Similarity=-0.028  Sum_probs=57.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfDl  164 (171)
                      ++...++|.+||.|..+..|.++  .++|+|+|.++++++.+++ ..    . .++.++.++.+.++     ...++||.
T Consensus        21 ~~gg~~VD~T~G~GGHS~~il~~--~g~VigiD~Dp~Ai~~A~~-L~----~-~rv~lv~~~f~~l~~~L~~~g~~~vDg   92 (285)
T 1wg8_A           21 RPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKG-LH----L-PGLTVVQGNFRHLKRHLAALGVERVDG   92 (285)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHH-TC----C-TTEEEEESCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHC--CCEEEEEeCCHHHHHHHHh-hc----c-CCEEEEECCcchHHHHHHHcCCCCcCE
Confidence            45689999999999999999985  4799999999999999987 42    2 36888999888774     22367999


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus        93 IL~   95 (285)
T 1wg8_A           93 ILA   95 (285)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            886

>2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B*

Probab=97.98  E-value=9.8e-06  Score=72.06  Aligned_cols=88  Identities=8%  Similarity=-0.104  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc----C--------------CCcEEEEEeCCHHHHHHHHHhhhh
Q 030823           76 AVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----G--------------GIEKLIMMDTSYDMLKLCKDAQQD  137 (171)
Q Consensus        76 ~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~----~--------------~~~~v~gvD~S~~mL~~a~~~~~~  137 (171)
                      .+++.|++.+.  ..+..+|||.|||||.++..+.+.    .              ....++|+|+++.|+..|+.... 
T Consensus       156 ~iv~~mv~~l~--p~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~-  232 (541)
T 2ar0_A          156 PLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL-  232 (541)
T ss_dssp             HHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHhc--cCCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH-
Confidence            34444544332  234578999999999988666531    1              01379999999999999975331 


Q ss_pred             hccCCCc------eeEEEccCCCCC-CCCCccceEEEe
Q 030823          138 AHNDNIE------TCFVVGDEEFLP-LKERYACRFFVL  168 (171)
Q Consensus       138 ~~~~~~~------~~~~~~D~e~LP-f~~~sfDlV~s~  168 (171)
                        ..+..      ..+.++|.-..+ .+.+.||+|++|
T Consensus       233 --l~gi~~~~~~~~~I~~gDtL~~~~~~~~~fD~Vv~N  268 (541)
T 2ar0_A          233 --LHDIEGNLDHGGAIRLGNTLGSDGENLPKAHIVATN  268 (541)
T ss_dssp             --TTTCCCBGGGTBSEEESCTTSHHHHTSCCEEEEEEC
T ss_pred             --HhCCCccccccCCeEeCCCcccccccccCCeEEEEC
Confidence              22332      566788865543 456789999987

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=97.96  E-value=5.7e-06  Score=71.01  Aligned_cols=75  Identities=12%  Similarity=-0.141  Sum_probs=56.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC-c--eeEEEccCCCC-C-CCCCccce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-E--TCFVVGDEEFL-P-LKERYACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~--~~~~~~D~e~L-P-f~~~sfDl  164 (171)
                      +..+|||++||+|.++..++... ..++|+++|++++.++.+++...   ..++ +  +.++.+|+..+ . -..+.||+
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~---~Ngl~~~~v~v~~~Da~~~l~~~~~~~fD~  128 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFK---LNNIPEDRYEIHGMEANFFLRKEWGFGFDY  128 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHH---HTTCCGGGEEEECSCHHHHHHSCCSSCEEE
T ss_pred             CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHH---HhCCCCceEEEEeCCHHHHHHHhhCCCCcE
Confidence            45789999999999999888643 23699999999999999987442   2344 2  77888887543 2 22568999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+..
T Consensus       129 V~lD  132 (392)
T 3axs_A          129 VDLD  132 (392)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9975

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=97.93  E-value=3e-05  Score=58.24  Aligned_cols=58  Identities=19%  Similarity=0.139  Sum_probs=42.5

Q ss_pred             CCCeEEEEcCCCc-HHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCC--CccceEE
Q 030823           91 TFPTALCLGGSLE-AVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE--RYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG-~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~--~sfDlV~  166 (171)
                      +..+|||||||.| .++..|++ .+  -.|+++|+++..++                 +++.|... |..+  +.||+|.
T Consensus        35 ~~~rVlEVG~G~g~~vA~~La~~~g--~~V~atDInp~Av~-----------------~v~dDiF~-P~~~~Y~~~DLIY   94 (153)
T 2k4m_A           35 PGTRVVEVGAGRFLYVSDYIRKHSK--VDLVLTDIKPSHGG-----------------IVRDDITS-PRMEIYRGAALIY   94 (153)
T ss_dssp             SSSEEEEETCTTCCHHHHHHHHHSC--CEEEEECSSCSSTT-----------------EECCCSSS-CCHHHHTTEEEEE
T ss_pred             CCCcEEEEccCCChHHHHHHHHhCC--CeEEEEECCccccc-----------------eEEccCCC-CcccccCCcCEEE
Confidence            4579999999999 69999986 33  57999999863322                 56777665 4333  4899996


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      +.
T Consensus        95 si   96 (153)
T 2k4m_A           95 SI   96 (153)
T ss_dssp             EE
T ss_pred             Ec
Confidence            53

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=97.92  E-value=1.4e-05  Score=73.30  Aligned_cols=75  Identities=12%  Similarity=-0.010  Sum_probs=51.4

Q ss_pred             CeEEEEcCCCcHHHHHHh---h-cC---------CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC-
Q 030823           93 PTALCLGGSLEAVRRLLR---G-RG---------GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-  158 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~---~-~~---------~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~-  158 (171)
                      ..|||||||+|-+.....   + .+         ...+|++||-++......+....+  .-+-.++.+.+|++.+.++ 
T Consensus       411 ~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~N--g~~d~VtVI~gd~eev~lp~  488 (745)
T 3ua3_A          411 VVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNVR--TWKRRVTIIESDMRSLPGIA  488 (745)
T ss_dssp             EEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHHH--TTTTCSEEEESCGGGHHHHH
T ss_pred             cEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHhc--CCCCeEEEEeCchhhccccc
Confidence            579999999999964321   1 11         124999999998666554433211  1222477899999998775 


Q ss_pred             ----CCccceEEEec
Q 030823          159 ----ERYACRFFVLA  169 (171)
Q Consensus       159 ----~~sfDlV~s~~  169 (171)
                          ++.+|+|||=-
T Consensus       489 ~~~~~ekVDIIVSEl  503 (745)
T 3ua3_A          489 KDRGFEQPDIIVSEL  503 (745)
T ss_dssp             HHTTCCCCSEEEECC
T ss_pred             ccCCCCcccEEEEec
Confidence                78999999843

>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}

Probab=97.87  E-value=0.0002  Score=59.21  Aligned_cols=80  Identities=14%  Similarity=0.184  Sum_probs=62.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh---hccCCCceeEEEccCCC-CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD---AHNDNIETCFVVGDEEF-LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~---~~~~~~~~~~~~~D~e~-LPf~~~sfDlV  165 (171)
                      ..+.+||-||.|.|.+++.+.+..+..+|+++|+.+++++.+++-.-.   ....+.++..+++|+.. +--.+++||+|
T Consensus        82 p~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~~~~~yDvI  161 (294)
T 3o4f_A           82 GHAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQTSQTFDVI  161 (294)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSCSSCCEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhhccccCCEE
Confidence            456899999999999999998876788999999999999999864311   01234567778899754 44567899999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      +.-.
T Consensus       162 i~D~  165 (294)
T 3o4f_A          162 ISDC  165 (294)
T ss_dssp             EESC
T ss_pred             EEeC
Confidence            9754

>3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei}

Probab=97.81  E-value=2.2e-05  Score=69.96  Aligned_cols=88  Identities=8%  Similarity=-0.171  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcC---------------CCcEEEEEeCCHHHHHHHHHhhhhhc
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRG---------------GIEKLIMMDTSYDMLKLCKDAQQDAH  139 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~---------------~~~~v~gvD~S~~mL~~a~~~~~~~~  139 (171)
                      ..+++.|++.+.   ....+|||.+||||.+.....+..               ....++|+|+++.++..|+....   
T Consensus       231 ~~Vv~lmv~ll~---p~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~Nl~---  304 (544)
T 3khk_A          231 KSIVTLIVEMLE---PYKGRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAMNMV---  304 (544)
T ss_dssp             HHHHHHHHHHHC---CCSEEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHHHHH---
T ss_pred             HHHHHHHHHHHh---cCCCeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHHHHH---
Confidence            455555555442   223489999999998876653210               02489999999999999975321   


Q ss_pred             cCCCc--eeEEEccCCCCC-CCCCccceEEEe
Q 030823          140 NDNIE--TCFVVGDEEFLP-LKERYACRFFVL  168 (171)
Q Consensus       140 ~~~~~--~~~~~~D~e~LP-f~~~sfDlV~s~  168 (171)
                      ..++.  +...++|.-..| +++..||+|++|
T Consensus       305 l~gi~~~i~i~~gDtL~~~~~~~~~fD~Iv~N  336 (544)
T 3khk_A          305 IRGIDFNFGKKNADSFLDDQHPDLRADFVMTN  336 (544)
T ss_dssp             HTTCCCBCCSSSCCTTTSCSCTTCCEEEEEEC
T ss_pred             HhCCCcccceeccchhcCcccccccccEEEEC
Confidence            23332  222567754443 567899999997

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=97.79  E-value=6.2e-05  Score=61.60  Aligned_cols=44  Identities=9%  Similarity=-0.095  Sum_probs=38.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      .+.+.|||++||+|.++......+  .+++|+|++++|++.+++..
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g--~~~~g~e~~~~~~~~a~~r~  277 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWG--RRALGVELVPRYAQLAKERF  277 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHH
Confidence            567899999999999999988744  69999999999999998765

>3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus}

Probab=97.77  E-value=5.1e-05  Score=70.57  Aligned_cols=97  Identities=7%  Similarity=-0.180  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHHHHHhc----ccCCCeEEEEcCCCcHHHHHHhhcCC---CcEEEEEeCCHHHHHHHHHhhhhh---ccC
Q 030823           72 SFVDAVAENLLDRLEDC----RKTFPTALCLGGSLEAVRRLLRGRGG---IEKLIMMDTSYDMLKLCKDAQQDA---HND  141 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i----~~~~~~vLDlGcGtG~l~~~L~~~~~---~~~v~gvD~S~~mL~~a~~~~~~~---~~~  141 (171)
                      |...+++..|++....+    ..+..+|||.|||+|.++..+.+..+   ..+++|+|+++.++..|+.+....   ...
T Consensus       298 YTP~eLA~lMVeLA~ill~~~l~~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LAK~RlNL~lN~Llh  377 (878)
T 3s1s_A          298 PTDIELGKVLSIISQHILGRPLTEDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELLSIRLGLLFPQLVS  377 (878)
T ss_dssp             SCCHHHHHHHHHHHHHHHCSCCCTTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHHHHHHHTTSTTTCB
T ss_pred             cCCHHHHHHHHHHHhhhccccCCCCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHHHHHHHHHHhhhhc
Confidence            34455666555541111    12457999999999999988876432   358999999999999983221100   011


Q ss_pred             CCce-eEEEccCCCC-CCCCCccceEEEe
Q 030823          142 NIET-CFVVGDEEFL-PLKERYACRFFVL  168 (171)
Q Consensus       142 ~~~~-~~~~~D~e~L-Pf~~~sfDlV~s~  168 (171)
                      +... .....|.... +...+.||+|++|
T Consensus       378 Gi~~~~I~~dD~L~~~~~~~~kFDVVIgN  406 (878)
T 3s1s_A          378 SNNAPTITGEDVCSLNPEDFANVSVVVMN  406 (878)
T ss_dssp             TTBCCEEECCCGGGCCGGGGTTEEEEEEC
T ss_pred             CCCcceEEecchhcccccccCCCCEEEEC
Confidence            2222 2222333322 3456789999987

>2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A*

Probab=97.77  E-value=0.0002  Score=61.27  Aligned_cols=74  Identities=8%  Similarity=-0.059  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCcHHHHHHhhc-----------------CCCcEEEEEeCC-----------HHHHHHHHHhhhhhccCCC
Q 030823           92 FPTALCLGGSLEAVRRLLRGR-----------------GGIEKLIMMDTS-----------YDMLKLCKDAQQDAHNDNI  143 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~-----------------~~~~~v~gvD~S-----------~~mL~~a~~~~~~~~~~~~  143 (171)
                      ..+|+|+||++|..+..+...                 .+.-+|+..|+.           +.+.+..++..    ....
T Consensus        53 ~~~IaDlGCssG~NT~~~v~~ii~~i~~~~~~~~~~~~~pe~~v~~nDLp~NDFN~lF~~L~~~~~~~~~~~----g~~~  128 (384)
T 2efj_A           53 CFKVGDLGCASGPNTFSTVRDIVQSIDKVGQEKKNELERPTIQIFLNDLFQNDFNSVFKLLPSFYRNLEKEN----GRKI  128 (384)
T ss_dssp             EEEEEEETCCSSHHHHHHHHHHHHHHTCC----------CEEEEEEECCTTSCHHHHHHHHHHHHHHHHHHT----CCCT
T ss_pred             ceEEEecCCCCCchHHHHHHHHHHHHHHHhhhcccCCCCCceEEEecCCCccchHHHHhhhhhhHhhhhhhc----cCCC
Confidence            467999999999888766431                 234588999998           66666553311    1112


Q ss_pred             ceeEEEccCCC---CCCCCCccceEEEec
Q 030823          144 ETCFVVGDEEF---LPLKERYACRFFVLA  169 (171)
Q Consensus       144 ~~~~~~~D~e~---LPf~~~sfDlV~s~~  169 (171)
                      +..|+.|....   -.|++++||+|+|++
T Consensus       129 ~~~f~~gvpgSFy~rlfp~~S~d~v~Ss~  157 (384)
T 2efj_A          129 GSCLIGAMPGSFYSRLFPEESMHFLHSCY  157 (384)
T ss_dssp             TSEEEEECCSCTTSCCSCTTCEEEEEEES
T ss_pred             CceEEEecchhhhhccCCCCceEEEEecc
Confidence            35677776665   589999999999986

>3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A*

Probab=97.68  E-value=5.7e-05  Score=62.59  Aligned_cols=77  Identities=4%  Similarity=-0.102  Sum_probs=50.1

Q ss_pred             cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823           88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      +.++..+||||||++|.++..+.+..+...|+|+|++..+.....-    ....+.++.......+..-++++.+|+|+|
T Consensus        78 l~~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg~~~~~~P~~----~~~~~~~iv~~~~~~di~~l~~~~~DlVls  153 (300)
T 3eld_A           78 YLRITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLGIEGHEKPIH----MQTLGWNIVKFKDKSNVFTMPTEPSDTLLC  153 (300)
T ss_dssp             SCCCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTSCCCCC----CCBTTGGGEEEECSCCTTTSCCCCCSEEEE
T ss_pred             CCCCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEecccccccccc----ccccCCceEEeecCceeeecCCCCcCEEee
Confidence            4457789999999999999999975566789999998654211000    000122333333333444566789999998


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      -
T Consensus       154 D  154 (300)
T 3eld_A          154 D  154 (300)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35

Probab=97.56  E-value=0.00012  Score=62.23  Aligned_cols=77  Identities=10%  Similarity=-0.060  Sum_probs=52.3

Q ss_pred             CCeEEEEcCCCcHHHHHHhhc----------------CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-
Q 030823           92 FPTALCLGGSLEAVRRLLRGR----------------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-  154 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~----------------~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-  154 (171)
                      .-+|+|+||++|..+..+...                .+.-+|+..|+...+.+..-+...... ...+..|+.|.... 
T Consensus        52 ~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~~~~-~~~~~~f~~gvpgSF  130 (359)
T 1m6e_X           52 RLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLPIEN-DVDGVCFINGVPGSF  130 (359)
T ss_dssp             EECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTTTSC-SCTTCEEEEEEESCS
T ss_pred             ceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcchhc-ccCCCEEEEecchhh
Confidence            357999999999777554321                234589999999999988754321000 00124566665554 


Q ss_pred             --CCCCCCccceEEEec
Q 030823          155 --LPLKERYACRFFVLA  169 (171)
Q Consensus       155 --LPf~~~sfDlV~s~~  169 (171)
                        -.|+++++|+|+|++
T Consensus       131 y~rlfp~~S~d~v~Ss~  147 (359)
T 1m6e_X          131 YGRLFPRNTLHFIHSSY  147 (359)
T ss_dssp             SSCCSCTTCBSCEEEES
T ss_pred             hhccCCCCceEEEEehh
Confidence              689999999999986

>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}

Probab=97.50  E-value=0.0012  Score=51.68  Aligned_cols=73  Identities=12%  Similarity=-0.004  Sum_probs=52.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC----CceeEEEccCCC------------
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN----IETCFVVGDEEF------------  154 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~----~~~~~~~~D~e~------------  154 (171)
                      +..+|||+||  |.-+..+++. ..++|+.+|.++++.+.+++...   ..+    -++.++.+|+..            
T Consensus        30 ~a~~VLEiGt--GySTl~lA~~-~~g~VvtvE~d~~~~~~ar~~l~---~~g~~~~~~I~~~~gda~~~~~wg~p~~~~~  103 (202)
T 3cvo_A           30 EAEVILEYGS--GGSTVVAAEL-PGKHVTSVESDRAWARMMKAWLA---ANPPAEGTEVNIVWTDIGPTGDWGHPVSDAK  103 (202)
T ss_dssp             HCSEEEEESC--SHHHHHHHTS-TTCEEEEEESCHHHHHHHHHHHH---HSCCCTTCEEEEEECCCSSBCGGGCBSSSTT
T ss_pred             CCCEEEEECc--hHHHHHHHHc-CCCEEEEEeCCHHHHHHHHHHHH---HcCCCCCCceEEEEeCchhhhcccccccchh
Confidence            3479999998  4677777763 25899999999999999987553   223    257788888643            


Q ss_pred             ---CC--------C-CCCccceEEEec
Q 030823          155 ---LP--------L-KERYACRFFVLA  169 (171)
Q Consensus       155 ---LP--------f-~~~sfDlV~s~~  169 (171)
                         +|        . ..++||+|+.-+
T Consensus       104 ~~~l~~~~~~i~~~~~~~~fDlIfIDg  130 (202)
T 3cvo_A          104 WRSYPDYPLAVWRTEGFRHPDVVLVDG  130 (202)
T ss_dssp             GGGTTHHHHGGGGCTTCCCCSEEEECS
T ss_pred             hhhHHHHhhhhhccccCCCCCEEEEeC
Confidence               22        2 237899999744

>1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24

Probab=97.42  E-value=0.00058  Score=57.77  Aligned_cols=81  Identities=10%  Similarity=0.053  Sum_probs=56.9

Q ss_pred             CCCChHHHHHHHHHHHHHHHhccc-----CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccC
Q 030823           67 TRPNDSFVDAVAENLLDRLEDCRK-----TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHND  141 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i~~-----~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~  141 (171)
                      +|++=-.-..+++.+++.+. +..     +...|||||.|.|.++..|.+.....+|+++|+.+.++...++..     .
T Consensus        30 lGQnFL~d~~i~~~Iv~~~~-l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~~L~~~~-----~  103 (353)
T 1i4w_A           30 YGFKYLWNPTVYNKIFDKLD-LTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-----E  103 (353)
T ss_dssp             GGCCCBCCHHHHHHHHHHHC-GGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-----T
T ss_pred             CCcCccCCHHHHHHHHHhcc-CCcccCcCCCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHHHHHHhc-----c
Confidence            45543333555666666654 222     357899999999999999997533468999999999999887642     1


Q ss_pred             CCceeEEEccCC
Q 030823          142 NIETCFVVGDEE  153 (171)
Q Consensus       142 ~~~~~~~~~D~e  153 (171)
                      ..++..+.+|+-
T Consensus       104 ~~~l~ii~~D~l  115 (353)
T 1i4w_A          104 GSPLQILKRDPY  115 (353)
T ss_dssp             TSSCEEECSCTT
T ss_pred             CCCEEEEECCcc
Confidence            235666778873

>3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana}

Probab=97.39  E-value=0.00033  Score=59.70  Aligned_cols=78  Identities=18%  Similarity=-0.041  Sum_probs=48.6

Q ss_pred             CCeEEEEcCCCcHHHHHHh--------hc-------CCCcEEEEEeCCHHHHHHHHHhhhhhcc----------CCCcee
Q 030823           92 FPTALCLGGSLEAVRRLLR--------GR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHN----------DNIETC  146 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~--------~~-------~~~~~v~gvD~S~~mL~~a~~~~~~~~~----------~~~~~~  146 (171)
                      ..+|+|+|||+|..+..+.        +.       .+.-+|+..|+...+-+..=+.......          ......
T Consensus        53 ~~~IaDlGCssG~Nt~~~v~~ii~~i~~~~~~~~~~~pe~~v~~nDLp~NDFn~lF~~L~~~~~~~~~~~~~~~~~~~~~  132 (374)
T 3b5i_A           53 PFTAVDLGCSSGANTVHIIDFIVKHISKRFDAAGIDPPEFTAFFSDLPSNDFNTLFQLLPPLVSNTCMEECLAADGNRSY  132 (374)
T ss_dssp             CEEEEEETCCSSHHHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEECTTSCHHHHHHHSCCBCCCC--CCC---CCCBCS
T ss_pred             ceEEEecCCCCChhHHHHHHHHHHHHHHHHhhcCCCCCceeEEecCCCccchHHHHhhhhhhhhhcchhhhccccCCCce
Confidence            4689999999998887762        11       1445899999988775443111100000          111224


Q ss_pred             EEEcc---CCCCCCCCCccceEEEec
Q 030823          147 FVVGD---EEFLPLKERYACRFFVLA  169 (171)
Q Consensus       147 ~~~~D---~e~LPf~~~sfDlV~s~~  169 (171)
                      |+.+.   ...-.||+++||+|+|++
T Consensus       133 f~~gvpgSFy~rlfP~~S~d~v~Ss~  158 (374)
T 3b5i_A          133 FVAGVPGSFYRRLFPARTIDFFHSAF  158 (374)
T ss_dssp             EEEEEESCTTSCCSCTTCEEEEEEES
T ss_pred             EEEecChhhhcccCCCcceEEEEecc
Confidence            54443   334579999999999986

>3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A*

Probab=97.38  E-value=0.00041  Score=56.07  Aligned_cols=80  Identities=10%  Similarity=-0.005  Sum_probs=51.9

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc-cCCCCCC
Q 030823           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG-DEEFLPL  157 (171)
Q Consensus        80 ~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~-D~e~LPf  157 (171)
                      ++.++.  ..++..+||||||++|.++...+......+|+++|+-..--    +........+. .+.|..+ |.+.++-
T Consensus        69 ei~ek~--~l~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~gh----e~P~~~~s~gwn~v~fk~gvDv~~~~~  142 (267)
T 3p8z_A           69 WFVERN--MVIPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPGH----EEPVPMSTYGWNIVKLMSGKDVFYLPP  142 (267)
T ss_dssp             HHHHTT--SSCCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTTS----CCCCCCCCTTTTSEEEECSCCGGGCCC
T ss_pred             HHHHhc--CCCCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCCc----cCcchhhhcCcCceEEEeccceeecCC
Confidence            344444  23566799999999999999777655667999999953211    00000001122 3678887 8776664


Q ss_pred             CCCccceEEE
Q 030823          158 KERYACRFFV  167 (171)
Q Consensus       158 ~~~sfDlV~s  167 (171)
                        ..+|+|+|
T Consensus       143 --~~~Dtllc  150 (267)
T 3p8z_A          143 --EKCDTLLC  150 (267)
T ss_dssp             --CCCSEEEE
T ss_pred             --ccccEEEE
Confidence              66999987

>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}

Probab=97.31  E-value=0.00097  Score=55.37  Aligned_cols=72  Identities=8%  Similarity=0.004  Sum_probs=47.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEc-cCCCCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVG-DEEFLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~-D~e~LPf~~~sfDlV~s  167 (171)
                      ++...||||||++|.++...+......+|+|+|+-..--.    ........+. -+.+..+ |...++.  ..+|+|+|
T Consensus        93 ~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG~~~he----~P~~~~ql~w~lV~~~~~~Dv~~l~~--~~~D~ivc  166 (321)
T 3lkz_A           93 EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKGGPGHE----EPQLVQSYGWNIVTMKSGVDVFYRPS--ECCDTLLC  166 (321)
T ss_dssp             CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCCSTTSC----CCCCCCBTTGGGEEEECSCCTTSSCC--CCCSEEEE
T ss_pred             CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcCCCCcc----CcchhhhcCCcceEEEeccCHhhCCC--CCCCEEEE
Confidence            4667999999999999997776556679999999653000    0000000111 2556666 7777764  56999987

>4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A*

Probab=97.14  E-value=0.00031  Score=59.53  Aligned_cols=79  Identities=15%  Similarity=-0.031  Sum_probs=58.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhcc----CCCceeEEEccCCCCC-CCCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHN----DNIETCFVVGDEEFLP-LKERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~----~~~~~~~~~~D~e~LP-f~~~sfDl  164 (171)
                      .+.++|||+++|.|.=+.+|+.....+.|+++|+++.-+...++.......    .+.++.....|...++ +..+.||.
T Consensus       147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~~~~~~~~~v~v~~~D~~~~~~~~~~~fD~  226 (359)
T 4fzv_A          147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVPEEIRDGNQVRVTSWDGRKWGELEGDTYDR  226 (359)
T ss_dssp             CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSCTTTTTSSSEEEECCCGGGHHHHSTTCEEE
T ss_pred             CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhhhhhccCCceEEEeCchhhcchhccccCCE
Confidence            567899999999999988888766667899999999988887654422111    1124556677877664 45689999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+.-
T Consensus       227 VLlD  230 (359)
T 4fzv_A          227 VLVD  230 (359)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9863

>3tka_A Ribosomal RNA small subunit methyltransferase H; HET: SAM CTN PG4; 2.25A {Escherichia coli}

Probab=97.10  E-value=0.00077  Score=56.88  Aligned_cols=72  Identities=13%  Similarity=0.069  Sum_probs=54.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--CC----CCcc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--LK----ERYA  162 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--f~----~~sf  162 (171)
                      ++.+.++|..||.|..+..|++. ++.++|+|+|.++++++.++ ..     ....+.++.++.+.++  ++    ++++
T Consensus        56 ~pggiyVD~TlG~GGHS~~iL~~lg~~GrVig~D~Dp~Al~~A~-rL-----~~~Rv~lv~~nF~~l~~~L~~~g~~~~v  129 (347)
T 3tka_A           56 RPDGIYIDGTFGRGGHSRLILSQLGEEGRLLAIDRDPQAIAVAK-TI-----DDPRFSIIHGPFSALGEYVAERDLIGKI  129 (347)
T ss_dssp             CTTCEEEESCCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHT-TC-----CCTTEEEEESCGGGHHHHHHHTTCTTCE
T ss_pred             CCCCEEEEeCcCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHH-hh-----cCCcEEEEeCCHHHHHHHHHhcCCCCcc
Confidence            56789999999999999999875 46789999999999999984 22     2335777888776663  11    1368


Q ss_pred             ceEEE
Q 030823          163 CRFFV  167 (171)
Q Consensus       163 DlV~s  167 (171)
                      |.|+.
T Consensus       130 DgILf  134 (347)
T 3tka_A          130 DGILL  134 (347)
T ss_dssp             EEEEE
T ss_pred             cEEEE
Confidence            88775

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=96.98  E-value=0.00078  Score=54.36  Aligned_cols=80  Identities=11%  Similarity=-0.011  Sum_probs=49.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-------CC-----CcEEEEEeCCH---HHHHHH-----------HHhhhh------
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-------GG-----IEKLIMMDTSY---DMLKLC-----------KDAQQD------  137 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-------~~-----~~~v~gvD~S~---~mL~~a-----------~~~~~~------  137 (171)
                      ++..+|||+|+|+|..+..+.+.       .+     ..+++++|..+   +++.++           ++....      
T Consensus        59 ~~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~l~~~w~~~~~  138 (257)
T 2qy6_A           59 HPLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQLQAQWPMPLP  138 (257)
T ss_dssp             SSEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHHHHHTCCCSCS
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHHHHHhcccccc
Confidence            34579999999999887765432       23     24899999765   666644           322110      


Q ss_pred             ------hccCCCceeEEEccCCC-CCCCCC----ccceEEEec
Q 030823          138 ------AHNDNIETCFVVGDEEF-LPLKER----YACRFFVLA  169 (171)
Q Consensus       138 ------~~~~~~~~~~~~~D~e~-LPf~~~----sfDlV~s~~  169 (171)
                            ......++..+.+|+.. +|..++    .||+|+.-+
T Consensus       139 g~~r~~~~~~~~~l~l~~GDa~~~l~~~~~~~~~~~D~iflD~  181 (257)
T 2qy6_A          139 GCHRLLLDEGRVTLDLWFGDINELISQLDDSLNQKVDAWFLDG  181 (257)
T ss_dssp             EEEEEEEC--CEEEEEEESCHHHHGGGSCGGGTTCEEEEEECS
T ss_pred             chhheeccCCceEEEEEECcHHHHHhhcccccCCeEEEEEECC
Confidence                  00112356678899765 564333    799998743

>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*

Probab=96.92  E-value=0.00067  Score=55.24  Aligned_cols=79  Identities=8%  Similarity=0.000  Sum_probs=47.2

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHH--HHHHHHHhhhhhccCCCce-eEEEc-cCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD--MLKLCKDAQQDAHNDNIET-CFVVG-DEEF  154 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~--mL~~a~~~~~~~~~~~~~~-~~~~~-D~e~  154 (171)
                      .+|.++-  +.++..+||||||+.|.++....+..+.+.|.|.++..+  +.....      ...++++ .+..+ |...
T Consensus        63 ~EIdeK~--likpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~P~~~------~~~Gv~~i~~~~G~Df~~  134 (269)
T 2px2_A           63 RWLVERR--FVQPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEEPMLM------QSYGWNIVTMKSGVDVFY  134 (269)
T ss_dssp             HHHHHTT--SCCCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCCCCCC------CSTTGGGEEEECSCCGGG
T ss_pred             HHHHHcC--CCCCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccCCCcc------cCCCceEEEeeccCCccC
Confidence            4455552  557789999999999999999987533445555555433  111100      0023232 23335 7655


Q ss_pred             CCCCCCccceEEE
Q 030823          155 LPLKERYACRFFV  167 (171)
Q Consensus       155 LPf~~~sfDlV~s  167 (171)
                      +  ++..+|+|+|
T Consensus       135 ~--~~~~~DvVLS  145 (269)
T 2px2_A          135 K--PSEISDTLLC  145 (269)
T ss_dssp             S--CCCCCSEEEE
T ss_pred             C--CCCCCCEEEe
Confidence            3  3568999998

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=96.65  E-value=0.0058  Score=48.79  Aligned_cols=45  Identities=9%  Similarity=-0.054  Sum_probs=38.8

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.|||..||+|..+......+  .+++|+|+++.+++.++++.
T Consensus       210 ~~~~~~vlD~f~GsGtt~~~a~~~g--r~~ig~e~~~~~~~~~~~r~  254 (260)
T 1g60_A          210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVL  254 (260)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHH
Confidence            3567899999999999998887744  79999999999999998754

>3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus}

Probab=96.40  E-value=0.009  Score=52.85  Aligned_cols=89  Identities=7%  Similarity=-0.082  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhh----cCC---------CcEEEEEeCCHHHHHHHHHhhhhhccC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG----RGG---------IEKLIMMDTSYDMLKLCKDAQQDAHND  141 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~----~~~---------~~~v~gvD~S~~mL~~a~~~~~~~~~~  141 (171)
                      ..|++.|++.+.  ..+..+|+|-+||||.+.....+    ...         ...++|+|+.+.+...|+-...   ..
T Consensus       203 ~~Vv~lmv~l~~--p~~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~mNl~---lh  277 (530)
T 3ufb_A          203 RPVVRFMVEVMD--PQLGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQMNLL---LH  277 (530)
T ss_dssp             HHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHHHHHH---HH
T ss_pred             HHHHHHHHHhhc--cCCCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHHHHHH---hc
Confidence            455555555432  23456899999999998755432    111         2469999999999999864211   11


Q ss_pred             CCc-eeEEEccCCCCCC----CCCccceEEEe
Q 030823          142 NIE-TCFVVGDEEFLPL----KERYACRFFVL  168 (171)
Q Consensus       142 ~~~-~~~~~~D~e~LPf----~~~sfDlV~s~  168 (171)
                      +.. .....+|.-..|+    +...||+|++|
T Consensus       278 g~~~~~I~~~dtL~~~~~~~~~~~~fD~Il~N  309 (530)
T 3ufb_A          278 GLEYPRIDPENSLRFPLREMGDKDRVDVILTN  309 (530)
T ss_dssp             TCSCCEEECSCTTCSCGGGCCGGGCBSEEEEC
T ss_pred             CCccccccccccccCchhhhcccccceEEEec
Confidence            221 2234566544443    23579999987

>2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus}

Probab=96.13  E-value=0.012  Score=48.12  Aligned_cols=78  Identities=12%  Similarity=-0.023  Sum_probs=50.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc----C-CCcEEEEEeCCHH--------------------------HHHHHHHhhhhh
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR----G-GIEKLIMMDTSYD--------------------------MLKLCKDAQQDA  138 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~----~-~~~~v~gvD~S~~--------------------------mL~~a~~~~~~~  138 (171)
                      ..+..|||+|+..|..+..++..    + +.++|+++|..++                          +++.+++.....
T Consensus       105 ~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~DtfeG~pe~~~~~~~~d~~~~~~~~~~~~~~~~~~ar~n~~~~  184 (282)
T 2wk1_A          105 NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADSFQGIPDVGEDGYAGDRKMALHRRNSVLAVSEEEVRRNFRNY  184 (282)
T ss_dssp             TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEECSSCSCCCCTTSCHHHHHHCGGGGHHHHCCCHHHHHHHHHHT
T ss_pred             CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEECCCCCCcccccccccccccccccccccchhHHHHHHHHHHHc
Confidence            34689999999999888777532    1 2579999997532                          345555433211


Q ss_pred             ccCCCceeEEEccC-CCCC-CCCCccceEEE
Q 030823          139 HNDNIETCFVVGDE-EFLP-LKERYACRFFV  167 (171)
Q Consensus       139 ~~~~~~~~~~~~D~-e~LP-f~~~sfDlV~s  167 (171)
                      ....-++.++.|+. +.+| +++++||+|+.
T Consensus       185 gl~~~~I~li~Gda~etL~~~~~~~~d~vfI  215 (282)
T 2wk1_A          185 DLLDEQVRFLPGWFKDTLPTAPIDTLAVLRM  215 (282)
T ss_dssp             TCCSTTEEEEESCHHHHSTTCCCCCEEEEEE
T ss_pred             CCCcCceEEEEeCHHHHHhhCCCCCEEEEEE
Confidence            11113588899986 4565 44679999985

>1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26

Probab=95.15  E-value=0.018  Score=48.03  Aligned_cols=69  Identities=13%  Similarity=0.003  Sum_probs=50.6

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV~s~  168 (171)
                      .+++|+-||.|.++..+...+- ...|+++|+++..++..+...     +  +..++.+|...+..   +...+|+|+..
T Consensus         3 ~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~~N~-----~--~~~~~~~Di~~~~~~~~~~~~~D~l~~g   75 (343)
T 1g55_A            3 LRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYNF-----P--HTQLLAKTIEGITLEEFDRLSFDMILMS   75 (343)
T ss_dssp             EEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHHC-----T--TSCEECSCGGGCCHHHHHHHCCSEEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHHHhc-----c--ccccccCCHHHccHhHcCcCCcCEEEEc
Confidence            5799999999999999987542 358999999999998886521     2  23356788777642   22268998864

>3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157}

Probab=95.01  E-value=0.049  Score=46.07  Aligned_cols=68  Identities=7%  Similarity=-0.046  Sum_probs=51.0

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC--------CCCccce
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL--------KERYACR  164 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf--------~~~sfDl  164 (171)
                      .+++|+-||.|.++..+...+ ...++++|+++..++..+..     .+  +..++++|+..+..        ....+|+
T Consensus         3 ~~vidLFsG~GGlslG~~~aG-~~~v~avE~d~~a~~t~~~N-----~~--~~~~~~~DI~~~~~~~~~~~~~~~~~~D~   74 (376)
T 3g7u_A            3 LNVIDLFSGVGGLSLGAARAG-FDVKMAVEIDQHAINTHAIN-----FP--RSLHVQEDVSLLNAEIIKGFFKNDMPIDG   74 (376)
T ss_dssp             CEEEEETCTTSHHHHHHHHHT-CEEEEEECSCHHHHHHHHHH-----CT--TSEEECCCGGGCCHHHHHHHHCSCCCCCE
T ss_pred             CeEEEEccCcCHHHHHHHHCC-CcEEEEEeCCHHHHHHHHHh-----CC--CCceEecChhhcCHHHHHhhcccCCCeeE
Confidence            579999999999999998754 56788999999988877642     12  34456788776642        3468999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+..
T Consensus        75 i~gg   78 (376)
T 3g7u_A           75 IIGG   78 (376)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            9864

>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*

Probab=94.40  E-value=0.082  Score=45.07  Aligned_cols=78  Identities=14%  Similarity=-0.002  Sum_probs=54.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh---ccC---CCceeEEEccCCCC----CCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA---HND---NIETCFVVGDEEFL----PLKE  159 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~---~~~---~~~~~~~~~D~e~L----Pf~~  159 (171)
                      .++.+||-||.|.|...+.+.+. +..+|+++|+.+++++.+++-.-..   ...   ...+..+++|+...    +-..
T Consensus       204 ~~pkrVLIIGgGdG~~~revlkh-~~~~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~~~  282 (381)
T 3c6k_A          204 YTGKDVLILGGGDGGILCEIVKL-KPKMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAKEG  282 (381)
T ss_dssp             CTTCEEEEEECTTCHHHHHHHTT-CCSEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHHHT
T ss_pred             CCCCeEEEECCCcHHHHHHHHhc-CCceeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhhcc
Confidence            35689999999999999999875 4589999999999999998742100   001   12355677775432    2234


Q ss_pred             CccceEEEe
Q 030823          160 RYACRFFVL  168 (171)
Q Consensus       160 ~sfDlV~s~  168 (171)
                      +.||+|+.-
T Consensus       283 ~~yDvIIvD  291 (381)
T 3c6k_A          283 REFDYVIND  291 (381)
T ss_dssp             CCEEEEEEE
T ss_pred             CceeEEEEC
Confidence            689999864

>3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus}

Probab=94.03  E-value=0.052  Score=45.21  Aligned_cols=71  Identities=13%  Similarity=0.042  Sum_probs=44.6

Q ss_pred             HHHHHHHhc---ccCCCeEEEEcC------CCcHHHHHHhhcCCC-cEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE
Q 030823           80 NLLDRLEDC---RKTFPTALCLGG------SLEAVRRLLRGRGGI-EKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV  149 (171)
Q Consensus        80 ~l~~rL~~i---~~~~~~vLDlGc------GtG~l~~~L~~~~~~-~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~  149 (171)
                      .|++-|...   ....++|||+|+      -+|..  .+.+.++. +.|+++|+.+--             .... .+++
T Consensus        95 qlcqyl~~~~~~vp~gmrVLDLGA~s~kg~APGS~--VLr~~~p~g~~VVavDL~~~~-------------sda~-~~Iq  158 (344)
T 3r24_A           95 QLCQYLNTLTLAVPYNMRVIHFGAGSDKGVAPGTA--VLRQWLPTGTLLVDSDLNDFV-------------SDAD-STLI  158 (344)
T ss_dssp             HHHHHHTTSCCCCCTTCEEEEESCCCTTSBCHHHH--HHHHHSCTTCEEEEEESSCCB-------------CSSS-EEEE
T ss_pred             HHHHHhccccEeecCCCEEEeCCCCCCCCCCCcHH--HHHHhCCCCcEEEEeeCcccc-------------cCCC-eEEE
Confidence            455555432   345789999996      66653  23332343 599999996411             1112 4588


Q ss_pred             ccCCCCCCCCCccceEEE
Q 030823          150 GDEEFLPLKERYACRFFV  167 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s  167 (171)
                      +|...+.. .+.||+|+|
T Consensus       159 GD~~~~~~-~~k~DLVIS  175 (344)
T 3r24_A          159 GDCATVHT-ANKWDLIIS  175 (344)
T ss_dssp             SCGGGEEE-SSCEEEEEE
T ss_pred             cccccccc-CCCCCEEEe
Confidence            99765443 588999998

>2py6_A Methyltransferase FKBM; YP_546752.1, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; 2.15A {Methylobacillus flagellatus KT} SCOP: c.66.1.56

Probab=93.98  E-value=0.1  Score=44.44  Aligned_cols=46  Identities=15%  Similarity=0.107  Sum_probs=37.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHh-hcCC-CcEEEEEeCCHHHHHHHHHhh
Q 030823           90 KTFPTALCLGGSLEAVRRLLR-GRGG-IEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~-~~~~-~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ++...++|+|++.|..+..++ ...+ .++|+++|+++...+..++..
T Consensus       225 ~~~~~viDvGAn~G~~s~~~a~~~~~~~~~V~afEP~p~~~~~L~~n~  272 (409)
T 2py6_A          225 SDSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNVL  272 (409)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHHH
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHHH
Confidence            466899999999999998877 4333 479999999999998887643

>1zkd_A DUF185; NESG, RPR58, structural genomics, PSI, protein structure INI northeast structural genomics consortium, unknown function; 2.10A {Rhodopseudomonas palustris} SCOP: c.66.1.52

Probab=93.81  E-value=0.57  Score=39.85  Aligned_cols=91  Identities=4%  Similarity=-0.100  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHhcccC-CCeEEEEcCCCcHHHHHHhhc-------CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC
Q 030823           72 SFVDAVAENLLDRLEDCRKT-FPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI  143 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~-~~~vLDlGcGtG~l~~~L~~~-------~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~  143 (171)
                      .+-+.++..+++.......+ .-.|+|+|.|+|.+...+.+.       ...-+++.||+|+.+.+.=++...   ..+ 
T Consensus        60 ~FGe~la~~~~~~w~~~g~p~~~~ivElGaG~GtLa~diL~~l~~~p~~~~~~~y~iVE~Sp~Lr~~Q~~~L~---~~~-  135 (387)
T 1zkd_A           60 MFGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLLA---GIR-  135 (387)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHST---TCS-
T ss_pred             HHHHHHHHHHHHHHHHcCCCCCcEEEEECCCcchHHHHHHHHHHhCCccccccEEEEEecCHHHHHHHHHHhc---CCC-
Confidence            33344455555443333333 236999999999997766431       122489999999988875443321   111 


Q ss_pred             ceeEEEccCCCCCCCCCccceEEEecc
Q 030823          144 ETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       144 ~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ++.| ..+.+.+|-  + .=+|++|.+
T Consensus       136 ~v~W-~~~l~~lp~--~-~~~viANE~  158 (387)
T 1zkd_A          136 NIHW-HDSFEDVPE--G-PAVILANEY  158 (387)
T ss_dssp             SEEE-ESSGGGSCC--S-SEEEEEESS
T ss_pred             CeEE-eCChhhcCC--C-CeEEEeccc
Confidence            3444 334445552  1 336666643

>2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ...

Probab=92.77  E-value=0.29  Score=40.41  Aligned_cols=66  Identities=14%  Similarity=-0.082  Sum_probs=46.7

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC-CCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~-~~sfDlV~s~  168 (171)
                      .+++|+.||.|.++..+...+ ...++++|+++..++..+...     +..    ..+|...+... -..+|+|+..
T Consensus        12 ~~~~dLFaG~Gg~~~g~~~aG-~~~v~~~e~d~~a~~t~~~N~-----~~~----~~~Di~~~~~~~~~~~D~l~~g   78 (327)
T 2c7p_A           12 LRFIDLFAGLGGFRLALESCG-AECVYSNEWDKYAQEVYEMNF-----GEK----PEGDITQVNEKTIPDHDILCAG   78 (327)
T ss_dssp             CEEEEETCTTTHHHHHHHHTT-CEEEEEECCCHHHHHHHHHHH-----SCC----CBSCGGGSCGGGSCCCSEEEEE
T ss_pred             CcEEEECCCcCHHHHHHHHCC-CeEEEEEeCCHHHHHHHHHHc-----CCC----CcCCHHHcCHhhCCCCCEEEEC
Confidence            689999999999999998754 578899999999888776522     221    14665554311 1258988864

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=92.23  E-value=0.41  Score=39.22  Aligned_cols=45  Identities=7%  Similarity=-0.028  Sum_probs=38.6

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.|||.-||+|..+......+  .+.+|+|+++.+.+.++++.
T Consensus       250 ~~~~~~VlDpF~GsGtt~~aa~~~g--r~~ig~e~~~~~~~~~~~r~  294 (323)
T 1boo_A          250 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRF  294 (323)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGG
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHcC--CCEEEEeCCHHHHHHHHHHH
Confidence            3567899999999999988777643  79999999999999998754

>3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica}

Probab=91.64  E-value=0.32  Score=40.33  Aligned_cols=71  Identities=10%  Similarity=0.085  Sum_probs=50.1

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcC-CCcEE-EEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRG-GIEKL-IMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~-~~~~v-~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDl  164 (171)
                      +...+++|+-||.|.++..+...+ ....+ +++|+++...+.-+...     +..   .+.+|...+..   +...+|+
T Consensus         8 ~~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~~N~-----~~~---~~~~DI~~~~~~~i~~~~~Di   79 (327)
T 3qv2_A            8 QKQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYSKNF-----KEE---VQVKNLDSISIKQIESLNCNT   79 (327)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHHHHH-----CCC---CBCCCTTTCCHHHHHHTCCCE
T ss_pred             CCCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHHHHC-----CCC---cccCChhhcCHHHhccCCCCE
Confidence            344689999999999999998754 23567 79999998887765421     221   45678777742   2236898


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      ++..
T Consensus        80 l~gg   83 (327)
T 3qv2_A           80 WFMS   83 (327)
T ss_dssp             EEEC
T ss_pred             EEec
Confidence            8754

>4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda}

Probab=90.38  E-value=0.34  Score=40.22  Aligned_cols=69  Identities=13%  Similarity=0.046  Sum_probs=48.5

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC---CCCCccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP---LKERYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP---f~~~sfDlV~s~  168 (171)
                      .+++|+-||.|.+...+...+- ...|+++|+++...+.-+..     .++  ...+.+|...+.   ++...+|+++..
T Consensus         4 ~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~~N-----~~~--~~~~~~DI~~~~~~~~~~~~~D~l~gg   76 (333)
T 4h0n_A            4 HKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYKHN-----FPE--TNLLNRNIQQLTPQVIKKWNVDTILMS   76 (333)
T ss_dssp             EEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-----CTT--SCEECCCGGGCCHHHHHHTTCCEEEEC
T ss_pred             CEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHHHh-----CCC--CceeccccccCCHHHhccCCCCEEEec
Confidence            4799999999999999987542 35788999999888776542     122  334567777664   223468988754

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=88.90  E-value=0.97  Score=37.11  Aligned_cols=45  Identities=13%  Similarity=0.008  Sum_probs=38.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCH---HHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSY---DMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~---~mL~~a~~~~  135 (171)
                      ..+.+.|||.=||+|..+......+  .+.+|+|+++   +.++.+.++.
T Consensus       240 ~~~~~~vlDpF~GsGtt~~aa~~~~--r~~ig~e~~~~~~~~~~~~~~Rl  287 (319)
T 1eg2_A          240 SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLTFL  287 (319)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHHHC
T ss_pred             CCCCCEEEecCCCCCHHHHHHHHcC--CcEEEEECCccHHHHHHHHHHHH
Confidence            3567899999999999988777643  6999999999   9999988754

>3iht_A S-adenosyl-L-methionine methyl transferase; YP_165822.1, STR genomics, joint center for structural genomics, JCSG; HET: MSE SAM; 1.80A {Ruegeria pomeroyi dss-3}

Probab=88.41  E-value=1.7  Score=32.80  Aligned_cols=35  Identities=11%  Similarity=-0.018  Sum_probs=30.6

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeC
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDT  123 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~  123 (171)
                      ..-..-|||+|-|.|..-.+|.+..+...|+.+|-
T Consensus        38 ~~~~GpVlElGLGNGRTydHLRe~~P~R~I~vfDR   72 (174)
T 3iht_A           38 AGLSGPVYELGLGNGRTYHHLRQHVQGREIYVFER   72 (174)
T ss_dssp             TTCCSCEEEECCTTCHHHHHHHHHCCSSCEEEEES
T ss_pred             cCCCCceEEecCCCChhHHHHHHhCCCCcEEEEEe
Confidence            33457799999999999999999888899999995

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=86.51  E-value=0.77  Score=38.27  Aligned_cols=44  Identities=20%  Similarity=0.076  Sum_probs=35.0

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||.+|||. |.++..+++.....+|+++|.+++.++.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 2dph_A          184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLSD  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHT
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHH
Confidence            4668999999977 7777777764344489999999999988864

>2qrv_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase 3A (DNMT3A) and ITS regulatory factor; HET: DNA SAH; 2.89A {Homo sapiens}

Probab=86.48  E-value=1.3  Score=35.99  Aligned_cols=71  Identities=15%  Similarity=0.038  Sum_probs=49.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcE--EEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC----CCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEK--LIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK----ERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~--v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~----~~sfD  163 (171)
                      +...+++|+=||.|.++..+...+ ...  |+++|+++...+.-+..     .+  ....+.+|...+...    .+.+|
T Consensus        14 ~~~~~vidLFaG~GG~~~g~~~aG-~~~~~v~a~E~d~~a~~ty~~N-----~~--~~~~~~~DI~~i~~~~i~~~~~~D   85 (295)
T 2qrv_A           14 RKPIRVLSLFDGIATGLLVLKDLG-IQVDRYIASEVCEDSITVGMVR-----HQ--GKIMYVGDVRSVTQKHIQEWGPFD   85 (295)
T ss_dssp             CCCEEEEEETCTTTHHHHHHHHTT-BCEEEEEEECCCHHHHHHHHHH-----TT--TCEEEECCGGGCCHHHHHHTCCCS
T ss_pred             CCCCEEEEeCcCccHHHHHHHHCC-CccceEEEEECCHHHHHHHHHh-----CC--CCceeCCChHHccHHHhcccCCcC
Confidence            445689999999999999888754 333  79999999887765431     12  234567887766421    14689


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|+..
T Consensus        86 ll~gg   90 (295)
T 2qrv_A           86 LVIGG   90 (295)
T ss_dssp             EEEEC
T ss_pred             EEEec
Confidence            88764

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=86.36  E-value=1.4  Score=35.93  Aligned_cols=66  Identities=6%  Similarity=-0.139  Sum_probs=44.0

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++.++||-+|+|. |.++..+++... .+|+++|.+++-++.+++       -+...  +..+.+.+  . +.+|+|+-+
T Consensus       175 ~~g~~VlV~GaG~vG~~a~qla~~~G-a~Vi~~~~~~~~~~~~~~-------lGa~~--v~~~~~~~--~-~~~D~vid~  241 (348)
T 3two_A          175 TKGTKVGVAGFGGLGSMAVKYAVAMG-AEVSVFARNEHKKQDALS-------MGVKH--FYTDPKQC--K-EELDFIIST  241 (348)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHTT-CEEEEECSSSTTHHHHHH-------TTCSE--EESSGGGC--C-SCEEEEEEC
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCC-CeEEEEeCCHHHHHHHHh-------cCCCe--ecCCHHHH--h-cCCCEEEEC
Confidence            4678999999875 677777766433 589999999998888865       23222  22333322  2 278888854

>4f3n_A Uncharacterized ACR, COG1565 superfamily; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.75A {Burkholderia thailandensis} PDB: 4g67_A*

Probab=85.50  E-value=2.4  Score=36.53  Aligned_cols=42  Identities=12%  Similarity=0.178  Sum_probs=31.6

Q ss_pred             CeEEEEcCCCcHHHHHHhh----cC-CCcEEEEEeCCHHHHHHHHHh
Q 030823           93 PTALCLGGSLEAVRRLLRG----RG-GIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~----~~-~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      ..|+|+|+|+|.+...+.+    .. ...+++.||+|+.+.++=++.
T Consensus       139 ~~ivE~GaG~GtLa~DiL~~l~~~~~~~~~y~iVE~Sp~Lr~~Q~~~  185 (432)
T 4f3n_A          139 RRVMEFGAGTGKLAAGLLTALAALGVELDEYAIVDLSGELRARQRET  185 (432)
T ss_dssp             CEEEEESCTTSHHHHHHHHHHHHTTCCCSEEEEECTTSSSHHHHHHH
T ss_pred             CeEEEeCCCccHHHHHHHHHHHhcCCCCceEEEEEcCHHHHHHHHHH
Confidence            6899999999998776643    11 134899999999887765543

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=84.18  E-value=1.3  Score=36.33  Aligned_cols=44  Identities=18%  Similarity=0.156  Sum_probs=34.5

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||.+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus       189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~~  233 (371)
T 1f8f_A          189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAKQ  233 (371)
T ss_dssp             CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence            4568999999876 7777777664333479999999999988865

>3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3}

Probab=84.06  E-value=3.8  Score=31.63  Aligned_cols=64  Identities=13%  Similarity=-0.003  Sum_probs=45.5

Q ss_pred             CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++||-.|+  |.++..+.+..  ...+|++++-++.-......         ..+.++.+|...+.  -..+|.|+.++
T Consensus         6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~---------~~~~~~~~D~~d~~--~~~~d~vi~~a   71 (286)
T 3ius_A            6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPDQMEAIRA---------SGAEPLLWPGEEPS--LDGVTHLLIST   71 (286)
T ss_dssp             CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGGGHHHHHH---------TTEEEEESSSSCCC--CTTCCEEEECC
T ss_pred             CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChhhhhhHhh---------CCCeEEEecccccc--cCCCCEEEECC
Confidence            57999994  88887775421  23689999998866554432         23677888888766  46789999876

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=83.89  E-value=1.8  Score=35.91  Aligned_cols=44  Identities=16%  Similarity=-0.009  Sum_probs=35.1

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus       184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~~  228 (398)
T 1kol_A          184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA  228 (398)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHHH
Confidence            4668999999876 7777777765444589999999999998865

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=83.15  E-value=0.21  Score=51.68  Aligned_cols=74  Identities=7%  Similarity=-0.158  Sum_probs=43.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC---C--CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC-CCCCCCccce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG---G--IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF-LPLKERYACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~---~--~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~-LPf~~~sfDl  164 (171)
                      +..+||+||.|||..+..+.+..   +  ..+++..|+|+...+.++++..     ..++..-.-|.+. -+|.+++||+
T Consensus      1240 ~~~~ilEigagtg~~t~~il~~l~~~~~~~~~yt~td~s~~~~~~a~~~f~-----~~di~~~~~d~~~~~~~~~~~ydl 1314 (2512)
T 2vz8_A         1240 PKMKVVEVLAGDGQLYSRIPALLNTQPVMDLDYTATDRNPQALEAAQAKLE-----QLHVTQGQWDPANPAPGSLGKADL 1314 (2512)
T ss_dssp             SEEEEEEESCSSSCCTTTHHHHTTTSSSCEEEEEEECSSSSSTTTTTTTHH-----HHTEEEECCCSSCCCC-----CCE
T ss_pred             CCceEEEECCCccHHHHHHHHhhcccCcccceEEEecCChHHHHHHHHHhh-----hcccccccccccccccCCCCceeE
Confidence            45689999999997765543211   1  3588999999988877765421     1112221124333 2566788999


Q ss_pred             EEEec
Q 030823          165 FFVLA  169 (171)
Q Consensus       165 V~s~~  169 (171)
                      |+.+.
T Consensus      1315 via~~ 1319 (2512)
T 2vz8_A         1315 LVCNC 1319 (2512)
T ss_dssp             EEEEC
T ss_pred             EEEcc
Confidence            99753

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=82.88  E-value=2.1  Score=34.92  Aligned_cols=44  Identities=20%  Similarity=0.178  Sum_probs=34.6

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|+|. |.++..+++.....+|+++|.+++-++.+++
T Consensus       170 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~~  214 (356)
T 1pl8_A          170 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE  214 (356)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence            4568999999875 7777777765444489999999998888865

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=82.88  E-value=3.4  Score=28.70  Aligned_cols=65  Identities=17%  Similarity=0.131  Sum_probs=41.0

Q ss_pred             CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030823           93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFF  166 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~  166 (171)
                      .+++-+|||  .++..+.+..  ...+|+++|.+++-++.+.+       .+  ..++.+|.....    ..-..+|+|+
T Consensus         7 ~~v~I~G~G--~iG~~la~~L~~~g~~V~~id~~~~~~~~~~~-------~~--~~~~~gd~~~~~~l~~~~~~~~d~vi   75 (141)
T 3llv_A            7 YEYIVIGSE--AAGVGLVRELTAAGKKVLAVDKSKEKIELLED-------EG--FDAVIADPTDESFYRSLDLEGVSAVL   75 (141)
T ss_dssp             CSEEEECCS--HHHHHHHHHHHHTTCCEEEEESCHHHHHHHHH-------TT--CEEEECCTTCHHHHHHSCCTTCSEEE
T ss_pred             CEEEEECCC--HHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH-------CC--CcEEECCCCCHHHHHhCCcccCCEEE
Confidence            578999985  4555543211  23689999999998887754       22  345667765321    1235688887


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      .+
T Consensus        76 ~~   77 (141)
T 3llv_A           76 IT   77 (141)
T ss_dssp             EC
T ss_pred             Ee
Confidence            64

>3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A*

Probab=82.77  E-value=2  Score=34.66  Aligned_cols=66  Identities=8%  Similarity=0.011  Sum_probs=47.4

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCC-CCccceEEE
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLK-ERYACRFFV  167 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~-~~sfDlV~s  167 (171)
                      .+||||=||.|-++..|.+.+ ..-+.++|+++...+.-+..     .+   ...+.+|+..+... -..+|+|+.
T Consensus         1 mkvidLFsG~GG~~~G~~~aG-~~~v~a~e~d~~a~~ty~~N-----~~---~~~~~~DI~~i~~~~~~~~D~l~g   67 (331)
T 3ubt_Y            1 MNLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESN-----HS---AKLIKGDISKISSDEFPKCDGIIG   67 (331)
T ss_dssp             CEEEEESCTTCHHHHHHHHTT-CEEEEEEECCTTTHHHHHHH-----CC---SEEEESCGGGCCGGGSCCCSEEEC
T ss_pred             CeEEEeCcCccHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHH-----CC---CCcccCChhhCCHhhCCcccEEEe
Confidence            368999999999999997754 57888999999887776531     12   24567888776432 136888764

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.45  E-value=5.1  Score=30.15  Aligned_cols=68  Identities=15%  Similarity=-0.025  Sum_probs=43.4

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCce-eEEEccCC-CCCCCCCccceEEE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET-CFVVGDEE-FLPLKERYACRFFV  167 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~-~~~~~D~e-~LPf~~~sfDlV~s  167 (171)
                      .++||-.| |+|.++..+.+..  ...+|++++-+++-+....+       .  .+ .++.+|.. .+.-.-+.+|+|+.
T Consensus        21 ~~~ilVtG-atG~iG~~l~~~L~~~G~~V~~~~R~~~~~~~~~~-------~--~~~~~~~~Dl~~~~~~~~~~~D~vi~   90 (236)
T 3e8x_A           21 GMRVLVVG-ANGKVARYLLSELKNKGHEPVAMVRNEEQGPELRE-------R--GASDIVVANLEEDFSHAFASIDAVVF   90 (236)
T ss_dssp             CCEEEEET-TTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHHH-------T--TCSEEEECCTTSCCGGGGTTCSEEEE
T ss_pred             CCeEEEEC-CCChHHHHHHHHHHhCCCeEEEEECChHHHHHHHh-------C--CCceEEEcccHHHHHHHHcCCCEEEE
Confidence            47899888 5666665554311  23699999999877665432       2  25 66778874 33212247899998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ++
T Consensus        91 ~a   92 (236)
T 3e8x_A           91 AA   92 (236)
T ss_dssp             CC
T ss_pred             CC
Confidence            76

>1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A

Probab=80.81  E-value=5.6  Score=32.75  Aligned_cols=43  Identities=12%  Similarity=-0.059  Sum_probs=33.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      +...|+.||||.......|...++.-.++-+|. |++++.-++.
T Consensus        97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~  139 (334)
T 1rjd_A           97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSI  139 (334)
T ss_dssp             SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHH
T ss_pred             CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHH
Confidence            457899999999999988876444458889998 7777765554

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=80.24  E-value=4.1  Score=28.52  Aligned_cols=65  Identities=15%  Similarity=0.095  Sum_probs=41.4

Q ss_pred             CeEEEEcCCC-c-HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEE
Q 030823           93 PTALCLGGSL-E-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFF  166 (171)
Q Consensus        93 ~~vLDlGcGt-G-~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~  166 (171)
                      ++|+-+|||. | .++..|.+.  ...|+++|.+++-++.+++       .+  +..+.+|.....    ..-..+|+|+
T Consensus         8 ~~viIiG~G~~G~~la~~L~~~--g~~v~vid~~~~~~~~~~~-------~g--~~~i~gd~~~~~~l~~a~i~~ad~vi   76 (140)
T 3fwz_A            8 NHALLVGYGRVGSLLGEKLLAS--DIPLVVIETSRTRVDELRE-------RG--VRAVLGNAANEEIMQLAHLECAKWLI   76 (140)
T ss_dssp             SCEEEECCSHHHHHHHHHHHHT--TCCEEEEESCHHHHHHHHH-------TT--CEEEESCTTSHHHHHHTTGGGCSEEE
T ss_pred             CCEEEECcCHHHHHHHHHHHHC--CCCEEEEECCHHHHHHHHH-------cC--CCEEECCCCCHHHHHhcCcccCCEEE
Confidence            6789999864 2 223344442  3689999999999888764       23  344677765432    1235788877


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ..
T Consensus        77 ~~   78 (140)
T 3fwz_A           77 LT   78 (140)
T ss_dssp             EC
T ss_pred             EE
Confidence            54

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	99.69
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	99.68
d1xxla_	234	Hypothetical protein YcgJ {Bacillus subtilis [TaxI	99.67
d1vl5a_	231	Hypothetical protein BH2331 {Bacillus halodurans [	99.65
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	99.6
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	99.57
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	99.56
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	99.54
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	99.52
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	99.5
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	99.49
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	99.47
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	99.45
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	99.44
d2p7ia1	225	Hypothetical protein ECA1738 {Erwinia carotovora [	99.43
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	99.43
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	99.42
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	99.38
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	99.36
d1pjza_	201	Thiopurine S-methyltransferase {Pseudomonas syring	99.35
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	99.34
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	99.27
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	99.23
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	99.23
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	99.22
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	99.21
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	99.2
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	99.18
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	99.17
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	99.16
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	99.15
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	99.14
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	99.12
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	99.11
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	99.11
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	99.11
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	99.1
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	99.1
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	99.1
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	99.09
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	99.08
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	99.05
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	99.04
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	99.03
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	99.0
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	99.0
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	98.96
d2h00a1	250	Methyltransferase 10 domain containing protein MET	98.86
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	98.84
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	98.82
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	98.8
d1qama_	235	rRNA adenine dimethylase {Bacillus subtilis, Ermc'	98.78
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	98.77
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	98.75
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	98.74
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	98.73
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	98.69
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	98.69
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	98.67
d1m6ya2	192	TM0872, methyltransferase domain {Thermotoga marit	98.66
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	98.56
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	98.56
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	98.55
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	98.48
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	98.44
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	98.4
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	98.35
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	98.24
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	98.21
d1qyra_	252	High level kasugamycin resistance protein KsgA {Es	98.2
d2f8la1	328	Hypothetical protein Lmo1582 {Listeria monocytogen	98.16
d1zq9a1	278	Probable dimethyladenosine transferase {Human (Hom	98.15
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	98.1
d2ih2a1	223	DNA methylase TaqI, N-terminal domain {Thermus aqu	98.05
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	98.0
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	97.95
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	97.91
d1fp2a2	244	Isoflavone O-methyltransferase {Alfalfa (Medicago	97.89
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	97.89
d1uira_	312	Spermidine synthase {Thermus thermophilus [TaxId:	97.88
d1mjfa_	276	Putative spermidine synthetase PF0127 (SpeE) {Arch	97.84
d1inla_	295	Spermidine synthase {Thermotoga maritima [TaxId: 2	97.8
d1xj5a_	290	Spermidine synthase {Thale cress (Arabidopsis thal	97.66
d1iy9a_	274	Spermidine synthase {Bacillus subtilis [TaxId: 142	97.65
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	97.62
d1wg8a2	182	TM0872, methyltransferase domain {Thermus thermoph	97.57
d2o07a1	285	Spermidine synthase {Human (Homo sapiens) [TaxId:	97.54
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	97.51
d2b2ca1	312	Spermidine synthase {Caenorhabditis elegans [TaxId	97.5
d1i4wa_	322	Transcription factor sc-mtTFB {Baker's yeast (Sacc	97.36
d1ej0a_	180	RNA methyltransferase FtsJ {Escherichia coli [TaxI	97.14
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	97.14
d2okca1	425	Type I restriction enzyme StySJI M protein {Bacter	96.95
d1sqga2	284	Ribosomal RNA small subunit methyltransferase B, R	96.75
d1ixka_	313	Hypothetical methyltransferase PH1374 {Archaeon Py	96.62
d2b9ea1	293	NOL1R {Human (Homo sapiens) [TaxId: 9606]}	96.56
d1af7a2	193	Chemotaxis receptor methyltransferase CheR, C-term	96.5
d2p41a1	257	An RNA cap (nucleoside-2'-O-)-methyltransferase do	96.12
d2bm8a1	232	Cephalosporin hydroxylase CmcI {Streptomyces clavu	95.57
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	94.75
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	94.74
d1zkda1	365	Hypothetical protein RPA4359 {Rhodopseudomonas pal	94.49
d2ar0a1	524	M.EcoKI {Escherichia coli [TaxId: 562]}	94.15
d2dula1	375	N(2),N(2)-dimethylguanosine tRNA methyltransferase	93.51
d1booa_	320	m.PvuII N4 cytosine-specific DNA methyltransferase	93.43
d1g60a_	256	Methyltransferase mboII {Moraxella bovis [TaxId: 4	92.76
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	92.69
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	92.57
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	91.97
d2g5ca2	171	Prephenate dehydrogenase TyrA {Aquifex aeolicus [T	91.95
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	91.13
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	90.98
d1eg2a_	279	m.RsrI N6 adenosine-specific DNA methyltransferase	89.92
d1g55a_	343	DNMT2 {Human (Homo sapiens) [TaxId: 9606]}	87.19
d1dcta_	324	DNA methylase HaeIII {Haemophilus aegyptius [TaxId	86.92
d1lssa_	132	Ktn Mja218 {Archaeon Methanococcus jannaschii [Tax	86.27
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	85.76
d1udca_	338	Uridine diphosphogalactose-4-epimerase (UDP-galact	85.13
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	84.43
d2f1ka2	165	Prephenate dehydrogenase TyrA {Synechocystis sp. p	82.46
d1o9ga_	249	rRNA methyltransferase AviRa {Streptomyces viridoc	81.71
d2py6a1	395	Methyltransferase FkbM {Methylobacillus flagellatu	81.2
d1i24a_	393	Sulfolipid biosynthesis protein SQD1 {Thale cress	81.18
d1ae1a_	258	Tropinone reductase {Jimsonweed (Datura stramonium	80.69
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	80.63

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.69  E-value=2.1e-16  Score=121.22  Aligned_cols=96  Identities=19%  Similarity=0.173  Sum_probs=74.3

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVV  149 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~  149 (171)
                      .....+.-...+..-+....++..+|||||||+|.++..|++.  ..+|+|+|+|++|++.|++...   ..+..+.+++
T Consensus        16 ~~~~~~~~~~~~~~~~~~~l~~~~~ILDiGcG~G~~~~~la~~--~~~v~giD~S~~~i~~ak~~~~---~~~~~~~~~~   90 (226)
T d1ve3a1          16 NSQEYRSRIETLEPLLMKYMKKRGKVLDLACGVGGFSFLLEDY--GFEVVGVDISEDMIRKAREYAK---SRESNVEFIV   90 (226)
T ss_dssp             TSHHHHHHHHHHHHHHHHSCCSCCEEEEETCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HTTCCCEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCcchhhhhHhhh--hcccccccccccchhhhhhhhc---cccccccccc
Confidence            3444444444444434333356689999999999999999984  4699999999999999987543   2445677899


Q ss_pred             ccCCCCCCCCCccceEEEecc
Q 030823          150 GDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +|++.+|+++++||+|+++.+
T Consensus        91 ~d~~~l~~~~~~fD~I~~~~~  111 (226)
T d1ve3a1          91 GDARKLSFEDKTFDYVIFIDS  111 (226)
T ss_dssp             CCTTSCCSCTTCEEEEEEESC
T ss_pred             cccccccccCcCceEEEEecc
Confidence            999999999999999999864

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=99.68  E-value=4.7e-16  Score=124.93  Aligned_cols=111  Identities=15%  Similarity=0.095  Sum_probs=88.1

Q ss_pred             ccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHH
Q 030823           47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD  126 (171)
Q Consensus        47 ~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~  126 (171)
                      ....++++....++  .....+.+..+.+.++..+.+++   ..+..+|||+|||+|.++..|++.++..+++|+|+|++
T Consensus        45 ~~~~~~~~~~~ar~--~~l~~g~~~~l~~~~~~~l~~~~---~~~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~  119 (268)
T d1p91a_          45 RDPGDSAEMMQARR--AFLDAGHYQPLRDAIVAQLRERL---DDKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKV  119 (268)
T ss_dssp             CCCSSSHHHHHHHH--HHHTTTTTHHHHHHHHHHHHHHS---CTTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHH
T ss_pred             CCCCCCHHHHHHHH--HHHHcCchHHHHHHHHHHHHHhc---CCCCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHh
Confidence            34456666654432  23446778888888887776654   34568999999999999999998777789999999999


Q ss_pred             HHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823          127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       127 mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      |++.|++.       ..++.|+++|++.+||++++||+|++..
T Consensus       120 ~~~~a~~~-------~~~~~~~~~d~~~l~~~~~sfD~v~~~~  155 (268)
T d1p91a_         120 AIKAAAKR-------YPQVTFCVASSHRLPFSDTSMDAIIRIY  155 (268)
T ss_dssp             HHHHHHHH-------CTTSEEEECCTTSCSBCTTCEEEEEEES
T ss_pred             hhhhhhcc-------cccccceeeehhhccCCCCCEEEEeecC
Confidence            99999763       3457889999999999999999999864

>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein YcgJ
species: Bacillus subtilis [TaxId: 1423]

Probab=99.67  E-value=2.3e-16  Score=123.39  Aligned_cols=76  Identities=14%  Similarity=0.120  Sum_probs=65.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++..+|||||||||.++..|++.+  .+|+|+|+|++|++.|++...   ..+ .++.++++|++.+||++++||+|+|+
T Consensus        15 ~~~~rILDiGcGtG~~~~~la~~~--~~v~gvD~S~~~l~~A~~~~~---~~~~~~~~~~~~d~~~~~~~~~~fD~v~~~   89 (234)
T d1xxla_          15 RAEHRVLDIGAGAGHTALAFSPYV--QECIGVDATKEMVEVASSFAQ---EKGVENVRFQQGTAESLPFPDDSFDIITCR   89 (234)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHH---HHTCCSEEEEECBTTBCCSCTTCEEEEEEE
T ss_pred             CCCCEEEEeCCcCcHHHHHHHHhC--CeEEEEeCChhhhhhhhhhhc---ccccccccccccccccccccccccceeeee
Confidence            577999999999999999999854  799999999999999987543   122 35889999999999999999999997


Q ss_pred             cc
Q 030823          169 AL  170 (171)
Q Consensus       169 ~~  170 (171)
                      .+
T Consensus        90 ~~   91 (234)
T d1xxla_          90 YA   91 (234)
T ss_dssp             SC
T ss_pred             ce
Confidence            53

>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein BH2331
species: Bacillus halodurans [TaxId: 86665]

Probab=99.65  E-value=5.5e-16  Score=119.95  Aligned_cols=77  Identities=18%  Similarity=0.183  Sum_probs=64.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++..+|||||||+|.++..+++.+  .+|+|+|+|++|++.|++....  ....++.|+++|.+.+||++++||+|++..
T Consensus        14 ~~~~rVLDiGcG~G~~~~~l~~~~--~~v~gvD~s~~~i~~A~~~~~~--~~~~~i~~~~~d~~~l~~~~~~fD~v~~~~   89 (231)
T d1vl5a_          14 KGNEEVLDVATGGGHVANAFAPFV--KKVVAFDLTEDILKVARAFIEG--NGHQQVEYVQGDAEQMPFTDERFHIVTCRI   89 (231)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHH--TTCCSEEEEECCC-CCCSCTTCEEEEEEES
T ss_pred             CCcCEEEEecccCcHHHHHHHHhC--CEEEEEECCHHHHhhhhhcccc--cccccccccccccccccccccccccccccc
Confidence            566899999999999999999854  6999999999999999875421  223468899999999999999999999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus        90 ~   90 (231)
T d1vl5a_          90 A   90 (231)
T ss_dssp             C
T ss_pred             c
Confidence            3

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=99.60  E-value=3.5e-15  Score=115.63  Aligned_cols=72  Identities=22%  Similarity=0.259  Sum_probs=60.9

Q ss_pred             cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEE
Q 030823           88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFV  167 (171)
Q Consensus        88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s  167 (171)
                      ...+..+|||+|||+|.++..|++.  ..+|+|+|+|++|++.|++..       . ..++.+|++.+||++++||+|++
T Consensus        39 ~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~giD~s~~~l~~a~~~~-------~-~~~~~~~~~~l~~~~~~fD~ii~  108 (246)
T d2avna1          39 YLKNPCRVLDLGGGTGKWSLFLQER--GFEVVLVDPSKEMLEVAREKG-------V-KNVVEAKAEDLPFPSGAFEAVLA  108 (246)
T ss_dssp             HCCSCCEEEEETCTTCHHHHHHHTT--TCEEEEEESCHHHHHHHHHHT-------C-SCEEECCTTSCCSCTTCEEEEEE
T ss_pred             hcCCCCEEEEECCCCchhccccccc--ceEEEEeeccccccccccccc-------c-cccccccccccccccccccceee
Confidence            3456789999999999999999984  469999999999999998632       1 23578999999999999999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       109 ~~  110 (246)
T d2avna1         109 LG  110 (246)
T ss_dssp             CS
T ss_pred             ec
Confidence            53

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=99.57  E-value=3.1e-15  Score=114.39  Aligned_cols=99  Identities=15%  Similarity=0.081  Sum_probs=72.0

Q ss_pred             ccccccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHH
Q 030823           47 RVSIFDRHLKRKQRDRAAWLTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYD  126 (171)
Q Consensus        47 ~~~iFDr~~~~~~r~ra~~~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~  126 (171)
                      +.++||+.+..++++.     ..+..+......    .+..+. +..+|||||||+|.++..+.      +++|+|+|++
T Consensus         2 ~~~~f~~~a~~Yd~w~-----~~~~~~~~~~~~----~~~~~~-~~~~vLDiGcG~G~~~~~~~------~~~giD~s~~   65 (208)
T d1vlma_           2 MWHIFERFVNEYERWF-----LVHRFAYLSELQ----AVKCLL-PEGRGVEIGVGTGRFAVPLK------IKIGVEPSER   65 (208)
T ss_dssp             TTHHHHHTHHHHHHHH-----HHTHHHHHHHHH----HHHHHC-CSSCEEEETCTTSTTHHHHT------CCEEEESCHH
T ss_pred             HHHHHHHHHHHHHHHH-----HHhHHHHHHHHH----HHHhhC-CCCeEEEECCCCcccccccc------eEEEEeCChh
Confidence            5678999888876531     112222222212    222222 34689999999999988874      4689999999


Q ss_pred             HHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823          127 MLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       127 mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      |++.++++         ++.++++|.+.+|+++++||+|+++.+
T Consensus        66 ~~~~a~~~---------~~~~~~~d~~~l~~~~~~fD~I~~~~~  100 (208)
T d1vlma_          66 MAEIARKR---------GVFVLKGTAENLPLKDESFDFALMVTT  100 (208)
T ss_dssp             HHHHHHHT---------TCEEEECBTTBCCSCTTCEEEEEEESC
T ss_pred             hccccccc---------ccccccccccccccccccccccccccc
Confidence            99999762         367899999999999999999999864

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=99.56  E-value=1.3e-14  Score=116.44  Aligned_cols=88  Identities=13%  Similarity=0.009  Sum_probs=69.7

Q ss_pred             HHHHHHHHhc--ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCC
Q 030823           79 ENLLDRLEDC--RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEF  154 (171)
Q Consensus        79 ~~l~~rL~~i--~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~  154 (171)
                      +.++++|...  ..+..+|||||||+|.++..|++.+ ..+|+|+|+|+.|++.|++...   ..+  .++.++++|.+.
T Consensus        53 ~~~~~~l~~~~~l~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvD~s~~~i~~a~~~~~---~~gl~~~v~~~~~d~~~  128 (282)
T d2o57a1          53 EWLASELAMTGVLQRQAKGLDLGAGYGGAARFLVRKF-GVSIDCLNIAPVQNKRNEEYNN---QAGLADNITVKYGSFLE  128 (282)
T ss_dssp             HHHHHHHHHTTCCCTTCEEEEETCTTSHHHHHHHHHH-CCEEEEEESCHHHHHHHHHHHH---HHTCTTTEEEEECCTTS
T ss_pred             HHHHHHHHHhcCCCCCCEEEEeCCCCcHHHhhhhccC-CcEEEEEeccchhhhhhhcccc---ccccccccccccccccc
Confidence            4444554432  3467899999999999999998753 3589999999999999987543   122  258899999999


Q ss_pred             CCCCCCccceEEEecc
Q 030823          155 LPLKERYACRFFVLAL  170 (171)
Q Consensus       155 LPf~~~sfDlV~s~~~  170 (171)
                      +|+++++||+|++..+
T Consensus       129 l~~~~~sfD~V~~~~~  144 (282)
T d2o57a1         129 IPCEDNSYDFIWSQDA  144 (282)
T ss_dssp             CSSCTTCEEEEEEESC
T ss_pred             ccccccccchhhccch
Confidence            9999999999998753

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=99.54  E-value=1.3e-14  Score=113.76  Aligned_cols=74  Identities=15%  Similarity=0.083  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+..+|||||||||.++..|++.+  .+|+|+|+|++||+.|+++..   ..+.++.++++|+..+++ +++||+|+|.
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g--~~v~GvD~S~~ml~~A~~~~~---~~~~~v~~~~~d~~~~~~-~~~fD~i~~~  108 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKF--KNTWAVDLSQEMLSEAENKFR---SQGLKPRLACQDISNLNI-NRKFDLITCC  108 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGS--SEEEEECSCHHHHHHHHHHHH---HTTCCCEEECCCGGGCCC-SCCEEEEEEC
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhC--CccEeeccchhhhhhcccccc---ccCccceeeccchhhhcc-ccccccccee
Confidence            3455789999999999999999854  589999999999999987542   355678899999999987 5799999984

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.52  E-value=1.6e-14  Score=112.77  Aligned_cols=73  Identities=18%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+..+|||||||||.++..|++.+  .+|+|+|+|++|++.|++...   ..+.++.++++|++.+|++ +.||+|++.
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~--~~v~gvD~s~~mi~~a~~~~~---~~~~~i~~~~~d~~~l~~~-~~fD~I~~~  112 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERG--YEVVGLDLHEEMLRVARRKAK---ERNLKIEFLQGDVLEIAFK-NEFDAVTMF  112 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---HTTCCCEEEESCGGGCCCC-SCEEEEEEC
T ss_pred             CCCCEEEEeCCCCCccchhhcccc--eEEEEEeeccccccccccccc---cccccchheehhhhhcccc-cccchHhhh
Confidence            455689999999999999999854  689999999999999987642   3455788999999999986 689999985

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=5.2e-14  Score=110.52  Aligned_cols=93  Identities=14%  Similarity=0.028  Sum_probs=70.9

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCF  147 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~  147 (171)
                      .++..++....|.+.+.  ..+..+|||||||+|.++..+++..+ .+|+|+|+|+.|++.|++...   ..++  ++.|
T Consensus        14 ~~p~~~~~~~~l~~~~~--l~pg~~VLDiGCG~G~~~~~la~~~~-~~v~GvD~s~~~~~~ar~~~~---~~gl~~~v~~   87 (245)
T d1nkva_          14 HNPFTEEKYATLGRVLR--MKPGTRILDLGSGSGEMLCTWARDHG-ITGTGIDMSSLFTAQAKRRAE---ELGVSERVHF   87 (245)
T ss_dssp             SSSCCHHHHHHHHHHTC--CCTTCEEEEETCTTCHHHHHHHHHTC-CEEEEEESCHHHHHHHHHHHH---HTTCTTTEEE
T ss_pred             cCCCCHHHHHHHHHHcC--CCCCCEEEEEcCCCCHHHHHHHHhcC-CEEEEEecccchhhHHHHHHH---Hhhccccchh
Confidence            34555555555554433  35678999999999999999987543 699999999999999987532   2333  4889


Q ss_pred             EEccCCCCCCCCCccceEEEec
Q 030823          148 VVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +++|.+.++ ++++||+|+|..
T Consensus        88 ~~~d~~~~~-~~~~fD~v~~~~  108 (245)
T d1nkva_          88 IHNDAAGYV-ANEKCDVAACVG  108 (245)
T ss_dssp             EESCCTTCC-CSSCEEEEEEES
T ss_pred             hhhHHhhcc-ccCceeEEEEEe
Confidence            999999984 689999999874

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-14  Score=109.73  Aligned_cols=76  Identities=12%  Similarity=0.040  Sum_probs=62.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||||||+|.++..|...+ ..+|+|+|+|++||+.|++...   ..+ .++.|+++|++.+++++++||+|++..
T Consensus        60 ~~~~vLDiGcG~G~~~~~l~~~~-~~~v~~vD~s~~~l~~ak~~~~---~~~~~~~~f~~~d~~~~~~~~~~fD~I~~~~  135 (222)
T d2ex4a1          60 GTSCALDCGAGIGRITKRLLLPL-FREVDMVDITEDFLVQAKTYLG---EEGKRVRNYFCCGLQDFTPEPDSYDVIWIQW  135 (222)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT-CSEEEEEESCHHHHHHHHHHTG---GGGGGEEEEEECCGGGCCCCSSCEEEEEEES
T ss_pred             CCCEEEEeccCCCHhhHHHHHhc-CCEEEEeecCHHHhhccccccc---ccccccccccccccccccccccccccccccc
Confidence            45789999999999999886533 3689999999999999987542   122 256899999999999999999999976


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       136 ~  136 (222)
T d2ex4a1         136 V  136 (222)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=99.47  E-value=2.3e-13  Score=105.50  Aligned_cols=79  Identities=18%  Similarity=0.126  Sum_probs=57.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      .++..+|||||||||.++..|++.  .+..+|+|+|+|++|++.|+++... ......+.+..+|...+  +.+.+|+|+
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~-~~~~~~~~~~~~d~~~~--~~~~~d~i~  113 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAA-YHSEIPVEILCNDIRHV--EIKNASMVI  113 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHT-SCCSSCEEEECSCTTTC--CCCSEEEEE
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHh-hcccchhhhccchhhcc--ccccceeeE
Confidence            456789999999999999988763  2567999999999999999875421 11223455555665554  457889998


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++.+
T Consensus       114 ~~~~  117 (225)
T d1im8a_         114 LNFT  117 (225)
T ss_dssp             EESC
T ss_pred             Eeee
Confidence            8753

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=99.45  E-value=1.8e-13  Score=110.14  Aligned_cols=76  Identities=13%  Similarity=0.003  Sum_probs=63.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++.+|||+|||+|.++..|++..+ ..+|+|+|+|++|++.|++...   ..+.++.|+++|.+.+|++ ++||+|+++.
T Consensus        27 ~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~---~~~~~~~f~~~d~~~~~~~-~~fD~v~~~~  102 (281)
T d2gh1a1          27 KPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFR---LLPYDSEFLEGDATEIELN-DKYDIAICHA  102 (281)
T ss_dssp             SCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHH---SSSSEEEEEESCTTTCCCS-SCEEEEEEES
T ss_pred             CcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhcccc---ccccccccccccccccccc-CCceEEEEeh
Confidence            457999999999999999987544 4689999999999999987542   3455788999999999985 6899999986


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       103 ~  103 (281)
T d2gh1a1         103 F  103 (281)
T ss_dssp             C
T ss_pred             h
Confidence            4

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=99.44  E-value=2.3e-13  Score=107.35  Aligned_cols=79  Identities=11%  Similarity=-0.043  Sum_probs=62.5

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC-CCCccceEEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL-KERYACRFFV  167 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf-~~~sfDlV~s  167 (171)
                      ..+..+|||||||+|..+..+.+. +..+|+|+|+|++||+.|+++... .....++.|.++|+...++ .+++||+|+|
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~-~~~~v~GiD~S~~~l~~A~~r~~~-~~~~~~v~f~~~D~~~~~~~~~~~fD~V~~   99 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERA-GIGEYYGVDIAEVSINDARVRARN-MKRRFKVFFRAQDSYGRHMDLGKEFDVISS   99 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHH-TCSEEEEEESCHHHHHHHHHHHHT-SCCSSEEEEEESCTTTSCCCCSSCEEEEEE
T ss_pred             CCCcCEEEEecccCcHHHHHHHHc-CCCeEEEecCCHHHHHHHHHHHHh-cCCCcceEEEEcchhhhcccccccceEEEE
Confidence            356689999999999988888764 346899999999999999875421 1223468899999988776 4679999998


Q ss_pred             ec
Q 030823          168 LA  169 (171)
Q Consensus       168 ~~  169 (171)
                      ..
T Consensus       100 ~~  101 (252)
T d1ri5a_         100 QF  101 (252)
T ss_dssp             ES
T ss_pred             cc
Confidence            75

>d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical protein ECA1738
species: Erwinia carotovora [TaxId: 554]

Probab=99.43  E-value=3.3e-13  Score=104.78  Aligned_cols=71  Identities=11%  Similarity=0.032  Sum_probs=60.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..|++.+  .+|+|+|+|++|++.|++..      .-++.++.++.+.+++ +++||+|++..+
T Consensus        20 ~~~~VLDiGcG~G~~~~~l~~~g--~~v~giD~s~~~i~~a~~~~------~~~~~~~~~~~~~~~~-~~~fD~I~~~~v   90 (225)
T d2p7ia1          20 RPGNLLELGSFKGDFTSRLQEHF--NDITCVEASEEAISHAQGRL------KDGITYIHSRFEDAQL-PRRYDNIVLTHV   90 (225)
T ss_dssp             CSSCEEEESCTTSHHHHHHTTTC--SCEEEEESCHHHHHHHHHHS------CSCEEEEESCGGGCCC-SSCEEEEEEESC
T ss_pred             CCCcEEEEeCCCcHHHHHHHHcC--CeEEEEeCcHHHhhhhhccc------cccccccccccccccc-ccccccccccce
Confidence            35789999999999999998854  68999999999999998642      2257789999999887 689999999764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.43  E-value=3.4e-13  Score=102.67  Aligned_cols=73  Identities=11%  Similarity=0.003  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEEEecc
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      ..+|||||||+|..+..|++++  .+|+|+|+|++|++.+++...   ..++ ++.+.++|.+.+++ +++||+|+++.+
T Consensus        31 ~grvLDiGcG~G~~~~~la~~g--~~v~gvD~s~~~l~~a~~~~~---~~~~~~~~~~~~d~~~~~~-~~~fD~I~~~~~  104 (198)
T d2i6ga1          31 PGRTLDLGCGNGRNSLYLAANG--YDVTAWDKNPASMANLERIKA---AEGLDNLQTDLVDLNTLTF-DGEYDFILSTVV  104 (198)
T ss_dssp             SCEEEEETCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHH---HTTCTTEEEEECCTTTCCC-CCCEEEEEEESC
T ss_pred             CCcEEEECCCCCHHHHHHHHHh--hhhccccCcHHHHHHHHHHhh---hccccchhhhheecccccc-cccccEEEEeee
Confidence            4699999999999999999854  699999999999999876542   2444 47788999999986 789999998753

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=99.42  E-value=6.6e-13  Score=105.60  Aligned_cols=76  Identities=13%  Similarity=0.047  Sum_probs=63.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||+|||+|.++..|+..+ ..+|+++|+|++|++.|++...    ....+.|+++|.+.+++++++||+|++..
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll~~~-~~~v~~vD~s~~~l~~a~~~~~----~~~~~~~~~~d~~~~~~~~~~fD~I~~~~  166 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLLTKL-YATTDLLEPVKHMLEEAKRELA----GMPVGKFILASMETATLPPNTYDLIVIQW  166 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH-CSEEEEEESCHHHHHHHHHHTT----TSSEEEEEESCGGGCCCCSSCEEEEEEES
T ss_pred             CCCCeEEEecccCChhhHHHHhhc-CceEEEEcCCHHHHHhhhcccc----ccccceeEEccccccccCCCccceEEeec
Confidence            356799999999999999876532 3689999999999999987531    22357889999999999999999999986


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       167 v  167 (254)
T d1xtpa_         167 T  167 (254)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.38  E-value=7.5e-13  Score=100.34  Aligned_cols=91  Identities=15%  Similarity=0.065  Sum_probs=72.4

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEE
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVV  149 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~  149 (171)
                      +...++-..++..+.  .++.++|||+|||+|.++..+++.  ..+|+++|++++|++.|++...   ..++  ++.+++
T Consensus        16 ~t~~eir~~il~~l~--~~~g~~VLDiGcGsG~~s~~lA~~--~~~V~avD~~~~~l~~a~~n~~---~~gl~~~v~~~~   88 (186)
T d1l3ia_          16 PTAMEVRCLIMCLAE--PGKNDVAVDVGCGTGGVTLELAGR--VRRVYAIDRNPEAISTTEMNLQ---RHGLGDNVTLME   88 (186)
T ss_dssp             CCCHHHHHHHHHHHC--CCTTCEEEEESCTTSHHHHHHHTT--SSEEEEEESCHHHHHHHHHHHH---HTTCCTTEEEEE
T ss_pred             CChHHHHHHHHHhcC--CCCCCEEEEEECCeEccccccccc--ceEEEEecCCHHHHHHHHHHHH---HcCCCcceEEEE
Confidence            445556555655543  357799999999999999999874  4799999999999999987543   2332  688899


Q ss_pred             ccCCCCCCCCCccceEEEec
Q 030823          150 GDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +|+..++++.+.||+|+++.
T Consensus        89 gda~~~~~~~~~~D~v~~~~  108 (186)
T d1l3ia_          89 GDAPEALCKIPDIDIAVVGG  108 (186)
T ss_dssp             SCHHHHHTTSCCEEEEEESC
T ss_pred             CchhhcccccCCcCEEEEeC
Confidence            99998888889999999864

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.36  E-value=2.1e-12  Score=98.28  Aligned_cols=85  Identities=19%  Similarity=0.135  Sum_probs=64.8

Q ss_pred             HHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCC
Q 030823           80 NLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE  159 (171)
Q Consensus        80 ~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~  159 (171)
                      .|++.+.  ..+..+|||+|||+|.++..+++.+  .+|+++|+|+.|++.+++..........++.++.+|... ++++
T Consensus        43 lLi~~l~--~~~~~~VLDiGcG~G~~~~~la~~~--~~v~~iD~s~~~i~~a~~n~~~~~l~~~~i~~~~~d~~~-~~~~  117 (194)
T d1dusa_          43 ILVENVV--VDKDDDILDLGCGYGVIGIALADEV--KSTTMADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE-NVKD  117 (194)
T ss_dssp             HHHHHCC--CCTTCEEEEETCTTSHHHHHHGGGS--SEEEEEESCHHHHHHHHHHHHHTTCTTSCEEEEECSTTT-TCTT
T ss_pred             HHHHhCC--cCCCCeEEEEeecCChhHHHHHhhc--cccceeeeccccchhHHHHHHHhCCccceEEEEEcchhh-hhcc
Confidence            3444443  2456899999999999999998744  699999999999999987543211233457788899866 6778


Q ss_pred             CccceEEEec
Q 030823          160 RYACRFFVLA  169 (171)
Q Consensus       160 ~sfDlV~s~~  169 (171)
                      ++||+|+++.
T Consensus       118 ~~fD~Ii~~~  127 (194)
T d1dusa_         118 RKYNKIITNP  127 (194)
T ss_dssp             SCEEEEEECC
T ss_pred             CCceEEEEcc
Confidence            9999999964

>d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Pseudomonas syringae [TaxId: 317]

Probab=99.35  E-value=3.9e-13  Score=100.13  Aligned_cols=80  Identities=13%  Similarity=-0.030  Sum_probs=61.8

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc----------cCCCceeEEEccCCCCCC-
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH----------NDNIETCFVVGDEEFLPL-  157 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~----------~~~~~~~~~~~D~e~LPf-  157 (171)
                      ..+..+|||+|||+|..+..|++++  .+|+|+|+|++|++.|+++.....          ..+....++.+|...++. 
T Consensus        18 ~~~~~rvLd~GCG~G~~a~~la~~G--~~V~gvD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~   95 (201)
T d1pjza_          18 VVPGARVLVPLCGKSQDMSWLSGQG--YHVVGAELSEAAVERYFTERGEQPHITSQGDFKVYAAPGIEIWCGDFFALTAR   95 (201)
T ss_dssp             CCTTCEEEETTTCCSHHHHHHHHHC--CEEEEEEECHHHHHHHHHHHCSCSEEEEETTEEEEECSSSEEEEECCSSSTHH
T ss_pred             CCCCCEEEEecCcCCHHHHHHHHcC--CceEeecccHHHHHHHHHHhccccchhhhhhhhhccccccceecccccccccc
Confidence            3567899999999999999999864  799999999999999987542100          012235678899888874 


Q ss_pred             CCCccceEEEecc
Q 030823          158 KERYACRFFVLAL  170 (171)
Q Consensus       158 ~~~sfDlV~s~~~  170 (171)
                      ...+||+|++..+
T Consensus        96 ~~~~~D~i~~~~~  108 (201)
T d1pjza_          96 DIGHCAAFYDRAA  108 (201)
T ss_dssp             HHHSEEEEEEESC
T ss_pred             cccceeEEEEEee
Confidence            4579999998653

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=99.34  E-value=9.5e-13  Score=105.29  Aligned_cols=81  Identities=15%  Similarity=0.062  Sum_probs=64.2

Q ss_pred             HHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCcc
Q 030823           83 DRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYA  162 (171)
Q Consensus        83 ~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sf  162 (171)
                      +.|....++..+|||+|||+|.++..+++.+  .+|+|+|+|+.|++.|++...   ..+++..++++|.+. ++++++|
T Consensus       112 ~~l~~~~~~g~~VLDiGcGsG~l~i~aa~~g--~~V~gvDis~~av~~A~~na~---~n~~~~~~~~~d~~~-~~~~~~f  185 (254)
T d2nxca1         112 KALARHLRPGDKVLDLGTGSGVLAIAAEKLG--GKALGVDIDPMVLPQAEANAK---RNGVRPRFLEGSLEA-ALPFGPF  185 (254)
T ss_dssp             HHHHHHCCTTCEEEEETCTTSHHHHHHHHTT--CEEEEEESCGGGHHHHHHHHH---HTTCCCEEEESCHHH-HGGGCCE
T ss_pred             HHHHhhcCccCEEEEcccchhHHHHHHHhcC--CEEEEEECChHHHHHHHHHHH---HcCCceeEEeccccc-ccccccc
Confidence            3344445678999999999999999888743  689999999999999987442   356667788888664 4567899


Q ss_pred             ceEEEec
Q 030823          163 CRFFVLA  169 (171)
Q Consensus       163 DlV~s~~  169 (171)
                      |+|+++-
T Consensus       186 D~V~ani  192 (254)
T d2nxca1         186 DLLVANL  192 (254)
T ss_dssp             EEEEEEC
T ss_pred             chhhhcc
Confidence            9999974

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.27  E-value=1e-11  Score=96.33  Aligned_cols=88  Identities=15%  Similarity=0.134  Sum_probs=69.0

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF  154 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~  154 (171)
                      +...|++.+.  .++.++|||||||||.++..|++. ++.++|+++|++++|++.|++...   ..+. ++.++++|...
T Consensus        63 ~~a~~l~~l~--l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~---~~~~~n~~~~~~d~~~  137 (213)
T d1dl5a1          63 LMALFMEWVG--LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVE---RLGIENVIFVCGDGYY  137 (213)
T ss_dssp             HHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEESCGGG
T ss_pred             hhHHHHHhhh--ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHh---hhcccccccccCchHH
Confidence            3344555443  356799999999999999999764 356799999999999999987543   2333 57788899988


Q ss_pred             CCCCCCccceEEEec
Q 030823          155 LPLKERYACRFFVLA  169 (171)
Q Consensus       155 LPf~~~sfDlV~s~~  169 (171)
                      .++.+++||+|++++
T Consensus       138 ~~~~~~~fD~I~~~~  152 (213)
T d1dl5a1         138 GVPEFSPYDVIFVTV  152 (213)
T ss_dssp             CCGGGCCEEEEEECS
T ss_pred             ccccccchhhhhhhc
Confidence            888889999999876

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.23  E-value=9.8e-12  Score=96.22  Aligned_cols=78  Identities=8%  Similarity=0.027  Sum_probs=66.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      .+.+.|||||||+|..+..|++..+...++|+|+++.|+..+.+...   ..+. ++.++.+|+..++  ++++++|.|+
T Consensus        28 ~~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~~---~~~l~Nv~~~~~Da~~l~~~~~~~~~d~v~  104 (204)
T d2fcaa1          28 NDNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVK---DSEAQNVKLLNIDADTLTDVFEPGEVKRVY  104 (204)
T ss_dssp             SCCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HSCCSSEEEECCCGGGHHHHCCTTSCCEEE
T ss_pred             CCCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHHH---HHhccCchhcccchhhhhcccCchhhhccc
Confidence            34578999999999999999988888999999999999999876543   2343 6889999998886  8999999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++..
T Consensus       105 i~fp  108 (204)
T d2fcaa1         105 LNFS  108 (204)
T ss_dssp             EESC
T ss_pred             cccc
Confidence            8754

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.23  E-value=2.1e-11  Score=97.91  Aligned_cols=99  Identities=14%  Similarity=0.015  Sum_probs=75.5

Q ss_pred             CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhcc-CCCce
Q 030823           68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN-DNIET  145 (171)
Q Consensus        68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~-~~~~~  145 (171)
                      +....+...-+..++.++.  ..+..+|||+|||+|.++..|++. ++.++|+++|++++|++.|++....... ...++
T Consensus        75 r~tqiiypkD~s~Ii~~l~--i~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~~~~~~~nv  152 (264)
T d1i9ga_          75 RGPQVIYPKDAAQIVHEGD--IFPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCYGQPPDNW  152 (264)
T ss_dssp             SCSCCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHHTSCCTTE
T ss_pred             CCccccchHHHHHHHHHhC--CCCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhhccCCCceE
Confidence            3344455455555655543  357899999999999999999864 5678999999999999999875432111 12368


Q ss_pred             eEEEccCCCCCCCCCccceEEEe
Q 030823          146 CFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++++|....++++++||.|+..
T Consensus       153 ~~~~~d~~~~~~~~~~fDaV~ld  175 (264)
T d1i9ga_         153 RLVVSDLADSELPDGSVDRAVLD  175 (264)
T ss_dssp             EEECSCGGGCCCCTTCEEEEEEE
T ss_pred             EEEecccccccccCCCcceEEEe
Confidence            88999999999999999999874

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.22  E-value=9.8e-12  Score=96.41  Aligned_cols=73  Identities=8%  Similarity=-0.092  Sum_probs=58.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRF  165 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV  165 (171)
                      .++..+|||+|||+|..+..|++..+.++|+|+|+|++|++.+++..+    ...++.++++|....+..+..+|.|
T Consensus        54 lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~----~~~ni~~i~~d~~~~~~~~~~~~~v  126 (209)
T d1nt2a_          54 LRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR----ERNNIIPLLFDASKPWKYSGIVEKV  126 (209)
T ss_dssp             CCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH----HCSSEEEECSCTTCGGGTTTTCCCE
T ss_pred             CCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhh----ccCCceEEEeeccCccccccccceE
Confidence            357799999999999999999876566799999999999999987543    2236888999988876655555444

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=1.9e-11  Score=95.73  Aligned_cols=93  Identities=18%  Similarity=0.085  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhcc---CCCceeEEEccCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHN---DNIETCFVVGDEE  153 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~---~~~~~~~~~~D~e  153 (171)
                      ...|++.|..-.++.++|||+|||+|..+..|++. ++.++|+++|.+++|++.|++.......   ...++.++++|..
T Consensus        63 ~a~~le~L~~~l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~~~~~~~~~~~~~gD~~  142 (224)
T d1i1na_          63 HAYALELLFDQLHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDPTLLSSGRVQLVVGDGR  142 (224)
T ss_dssp             HHHHHHHTTTTSCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCTHHHHTSSEEEEESCGG
T ss_pred             HHHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCcccccccceEEEEeecc
Confidence            34555555433457789999999999999888763 4567999999999999999765421000   1124677889999


Q ss_pred             CCCCCCCccceEEEecc
Q 030823          154 FLPLKERYACRFFVLAL  170 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~~~  170 (171)
                      ..+++++.||+|++++.
T Consensus       143 ~~~~~~~~fD~I~~~~~  159 (224)
T d1i1na_         143 MGYAEEAPYDAIHVGAA  159 (224)
T ss_dssp             GCCGGGCCEEEEEECSB
T ss_pred             cccchhhhhhhhhhhcc
Confidence            88888999999998763

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.20  E-value=1.7e-11  Score=96.39  Aligned_cols=98  Identities=12%  Similarity=0.045  Sum_probs=71.3

Q ss_pred             CCCChHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           67 TRPNDSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        67 ~~~~~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      |+.-++.+..++..+..-+..+ ..+..+|||||||+|..+..|+...+.+.|+|+|+|+.|++.+++..    ....++
T Consensus        49 ~r~w~p~rsklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a----~~~~ni  124 (230)
T d1g8sa_          49 YRIWNPNKSKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC----AERENI  124 (230)
T ss_dssp             EEECCTTTCHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT----TTCTTE
T ss_pred             eeeECCCccHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH----hhhccc
Confidence            3444555556666665544443 35678999999999999999998777789999999999999998754    233456


Q ss_pred             eEEEccCCCC-CCCCCccceEEEe
Q 030823          146 CFVVGDEEFL-PLKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~L-Pf~~~sfDlV~s~  168 (171)
                      .++.+|.... ++.+..+|++++.
T Consensus       125 ~~i~~d~~~~~~~~~~~~~v~~i~  148 (230)
T d1g8sa_         125 IPILGDANKPQEYANIVEKVDVIY  148 (230)
T ss_dssp             EEEECCTTCGGGGTTTCCCEEEEE
T ss_pred             ceEEEeeccCcccccccceeEEee
Confidence            6788887655 3566777776553

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=1.8e-11  Score=95.02  Aligned_cols=78  Identities=9%  Similarity=-0.083  Sum_probs=61.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh---------------ccCCCceeEEEccCCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA---------------HNDNIETCFVVGDEEF  154 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~---------------~~~~~~~~~~~~D~e~  154 (171)
                      .+..+|||+|||+|..+..|++.+  .+|+|+|+|+.|++.++++....               ...+.++.++++|...
T Consensus        44 ~~~~rvLd~GCG~G~~a~~LA~~G--~~V~gvD~S~~ai~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~d~~~  121 (229)
T d2bzga1          44 KSGLRVFFPLCGKAVEMKWFADRG--HSVVGVEISELGIQEFFTEQNLSYSEEPITEIPGTKVFKSSSGNISLYCCSIFD  121 (229)
T ss_dssp             CCSCEEEETTCTTCTHHHHHHHTT--CEEEEECSCHHHHHHHHHHTTCCEEEEECTTSTTCEEEEETTSSEEEEESCGGG
T ss_pred             CCCCEEEEeCCCCcHHHHHHHhCC--CcEEEEeCCHHHHHHHHHHhhccccccchhcccccceeeecCCcEEEEEcchhh
Confidence            356799999999999999999854  69999999999999987653100               0123457889999887


Q ss_pred             CC-CCCCccceEEEec
Q 030823          155 LP-LKERYACRFFVLA  169 (171)
Q Consensus       155 LP-f~~~sfDlV~s~~  169 (171)
                      ++ ..+++||+|+..+
T Consensus       122 l~~~~~~~fd~i~~~~  137 (229)
T d2bzga1         122 LPRTNIGKFDMIWDRG  137 (229)
T ss_dssp             GGGSCCCCEEEEEESS
T ss_pred             ccccccCceeEEEEEE
Confidence            74 6678999998765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.17  E-value=7.3e-11  Score=91.20  Aligned_cols=78  Identities=13%  Similarity=0.073  Sum_probs=65.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCC--CCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLP--LKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LP--f~~~sfDlV~  166 (171)
                      ...+.|||||||+|.++..+++..+...++|+|+++.|+..+.++..   ..+. ++.++.+|++.++  ++++++|.|+
T Consensus        30 ~~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~~~~~---~~~l~Ni~~~~~da~~l~~~~~~~~~~~i~  106 (204)
T d1yzha1          30 NDNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVL---EVGVPNIKLLWVDGSDLTDYFEDGEIDRLY  106 (204)
T ss_dssp             SCCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH---HHCCSSEEEEECCSSCGGGTSCTTCCSEEE
T ss_pred             CCCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHHHhhh---hhccccceeeecCHHHHhhhccCCceehhc
Confidence            34578999999999999999988888999999999999999876543   2333 6888999998886  8899999999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      ++.-
T Consensus       107 i~fP  110 (204)
T d1yzha1         107 LNFS  110 (204)
T ss_dssp             EESC
T ss_pred             cccc
Confidence            8754

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.16  E-value=7.4e-11  Score=90.94  Aligned_cols=89  Identities=11%  Similarity=-0.029  Sum_probs=63.5

Q ss_pred             hCCCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCce
Q 030823           66 LTRPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIET  145 (171)
Q Consensus        66 ~~~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~  145 (171)
                      +|.....+...+...+. .+.+  -...+|||+|||||.++..+...+ ..+|+++|+++++++.|++..       .++
T Consensus        26 Qy~T~~~~a~~~~~~~~-~~~d--l~Gk~VLDlGcGtG~l~i~a~~~g-a~~V~~vDid~~a~~~ar~N~-------~~~   94 (197)
T d1ne2a_          26 QYPTDASTAAYFLIEIY-NDGN--IGGRSVIDAGTGNGILACGSYLLG-AESVTAFDIDPDAIETAKRNC-------GGV   94 (197)
T ss_dssp             -CCCCHHHHHHHHHHHH-HHTS--SBTSEEEEETCTTCHHHHHHHHTT-BSEEEEEESCHHHHHHHHHHC-------TTS
T ss_pred             cCCCCHHHHHHHHHHHH-HcCC--CCCCEEEEeCCCCcHHHHHHHHcC-CCcccccccCHHHHHHHHHcc-------ccc
Confidence            34455555444443322 2222  246799999999999987777643 468999999999999998632       246


Q ss_pred             eEEEccCCCCCCCCCccceEEEe
Q 030823          146 CFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       146 ~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .++++|...++   +.||+|++|
T Consensus        95 ~~~~~D~~~l~---~~fD~Vi~N  114 (197)
T d1ne2a_          95 NFMVADVSEIS---GKYDTWIMN  114 (197)
T ss_dssp             EEEECCGGGCC---CCEEEEEEC
T ss_pred             cEEEEehhhcC---CcceEEEeC
Confidence            78999988765   689999987

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=4.8e-11  Score=92.88  Aligned_cols=74  Identities=9%  Similarity=0.018  Sum_probs=58.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC--CCCCCCCccceEEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE--FLPLKERYACRFFV  167 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e--~LPf~~~sfDlV~s  167 (171)
                      .+..+|||||||+|..+..+++.. ..+|+++|+|++|++.|++...   .....+..+.++..  ..++++++||+|+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~-~~~v~~id~s~~~~~~a~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~fD~i~f  127 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAP-IDEHWIIECNDGVFQRLRDWAP---RQTHKVIPLKGLWEDVAPTLPDGHFDGILY  127 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSC-EEEEEEEECCHHHHHHHHHHGG---GCSSEEEEEESCHHHHGGGSCTTCEEEEEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcC-CCeEEEeCCCHHHHHHHHHHhh---hcccccccccccccccccccccccccceee
Confidence            456799999999999999998753 4689999999999999987542   23445556666654  44688899999984

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.14  E-value=1.8e-10  Score=92.25  Aligned_cols=75  Identities=13%  Similarity=0.029  Sum_probs=50.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC----CCCCCCCccce
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE----FLPLKERYACR  164 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e----~LPf~~~sfDl  164 (171)
                      +..+|||+|||+|.++..|++.+  .+|+|+|+|++||+.|++..........  ......++..    .+|+ .++||+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g--~~v~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~fd~  132 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEG--FSVTSVDASDKMLKYALKERWNRRKEPAFDKWVIEEANWLTLDKDVPA-GDGFDA  132 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTT--CEEEEEESCHHHHHHHHHHHHHTTTSHHHHTCEEEECCGGGHHHHSCC-TTCEEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcC--CeeeeccCchHHHHHHHHHHHhcccccccceeeeeeccccccccccCC-CCCceE
Confidence            34689999999999999999854  6899999999999999875421000100  1112222222    2333 578999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |++.
T Consensus       133 v~~~  136 (292)
T d1xvaa_         133 VICL  136 (292)
T ss_dssp             EEEC
T ss_pred             EEEe
Confidence            9975

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-10  Score=94.06  Aligned_cols=77  Identities=12%  Similarity=0.018  Sum_probs=60.4

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+++.+ ..+|+++|.|+.|+...+....  .....++.++.+|.+.+++++++||+|++..+
T Consensus        35 ~~~~VLDiGcG~G~lsl~aa~~G-a~~V~aid~s~~~~~a~~~~~~--~~~~~~i~~~~~~~~~l~~~~~~~D~Ivse~~  111 (311)
T d2fyta1          35 KDKVVLDVGCGTGILSMFAAKAG-AKKVLGVDQSEILYQAMDIIRL--NKLEDTITLIKGKIEEVHLPVEKVDVIISEWM  111 (311)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEESSTHHHHHHHHHHH--TTCTTTEEEEESCTTTSCCSCSCEEEEEECCC
T ss_pred             CcCEEEEECCCCCHHHHHHHHcC-CCEEEEEeCHHHHHHHHHHHHH--hCCCccceEEEeeHHHhcCccccceEEEEeee
Confidence            45789999999999999888854 3699999999998765433221  12233688899999999999999999998543

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.11  E-value=3.1e-10  Score=87.22  Aligned_cols=71  Identities=8%  Similarity=-0.017  Sum_probs=57.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...+|||+|||||.++..+..++ ..+|+|+|+++++++.+++...   ..+.+..++.+|...+   ++.||+|+++
T Consensus        46 ~g~~vLDlg~GtG~l~i~a~~~g-~~~v~~vdi~~~~~~~a~~N~~---~~~~~~~~~~~d~~~~---~~~fD~Vi~n  116 (201)
T d1wy7a1          46 EGKVVADLGAGTGVLSYGALLLG-AKEVICVEVDKEAVDVLIENLG---EFKGKFKVFIGDVSEF---NSRVDIVIMN  116 (201)
T ss_dssp             TTCEEEEETCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHTG---GGTTSEEEEESCGGGC---CCCCSEEEEC
T ss_pred             CCCEEEECcCcchHHHHHHHHcC-CCEEEEEcCcHHHHHHHHHHHH---HcCCCceEEECchhhh---CCcCcEEEEc
Confidence            45799999999999998877653 3599999999999999987432   3455677888887665   4679999987

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=1.3e-10  Score=93.55  Aligned_cols=83  Identities=17%  Similarity=0.089  Sum_probs=60.9

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP  156 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP  156 (171)
                      +.++++|.  .++..+|||||||+|.++..+++..+ .+|+|+|+|+++++.++++..   ..+.  .+.+...|...+ 
T Consensus        42 ~~~~~~l~--l~~g~~VLDiGCG~G~~a~~~a~~~g-~~v~gi~ls~~q~~~a~~~~~---~~~l~~~~~~~~~d~~~~-  114 (280)
T d2fk8a1          42 DLNLDKLD--LKPGMTLLDIGCGWGTTMRRAVERFD-VNVIGLTLSKNQHARCEQVLA---SIDTNRSRQVLLQGWEDF-  114 (280)
T ss_dssp             HHHHTTSC--CCTTCEEEEESCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHH---TSCCSSCEEEEESCGGGC-
T ss_pred             HHHHHHcC--CCCCCEEEEecCCchHHHHHHHHhCc-eeEEEecchHHHHHHHHHHHH---hhccccchhhhhhhhhhh-
Confidence            34545442  35678999999999999998887543 599999999999999987653   2333  344555565444 


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                        +++||.|+|..+
T Consensus       115 --~~~fD~i~si~~  126 (280)
T d2fk8a1         115 --AEPVDRIVSIEA  126 (280)
T ss_dssp             --CCCCSEEEEESC
T ss_pred             --ccchhhhhHhhH
Confidence              479999999754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.11  E-value=7.5e-11  Score=95.72  Aligned_cols=83  Identities=14%  Similarity=0.009  Sum_probs=61.8

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLP  156 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LP  156 (171)
                      +.+++++.  ..+..+|||||||.|.++..+++..+ .+|+|+++|+++++.++++..   ..+.  .+.+...|   .+
T Consensus        51 ~~~~~~l~--l~~G~~VLDiGCG~G~~~~~~a~~~g-~~v~git~s~~q~~~a~~~~~---~~~l~~~v~~~~~d---~~  121 (291)
T d1kpia_          51 KLALDKLN--LEPGMTLLDIGCGWGSTMRHAVAEYD-VNVIGLTLSENQYAHDKAMFD---EVDSPRRKEVRIQG---WE  121 (291)
T ss_dssp             HHHHHTTC--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHH---HSCCSSCEEEEECC---GG
T ss_pred             HHHHHhcC--CCCCCEEEEecCcchHHHHHHHHhcC-cceeeccchHHHHHHHHHHHH---hhccchhhhhhhhc---cc
Confidence            44555543  35779999999999999999986544 599999999999999987653   2332  34445555   45


Q ss_pred             CCCCccceEEEecc
Q 030823          157 LKERYACRFFVLAL  170 (171)
Q Consensus       157 f~~~sfDlV~s~~~  170 (171)
                      +.+++||.|+|...
T Consensus       122 ~~~~~fD~i~sie~  135 (291)
T d1kpia_         122 EFDEPVDRIVSLGA  135 (291)
T ss_dssp             GCCCCCSEEEEESC
T ss_pred             ccccccceEeechh
Confidence            67899999999753

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=4.4e-11  Score=98.31  Aligned_cols=80  Identities=15%  Similarity=0.066  Sum_probs=63.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhc-------cCCCceeEEEccCCCCCCCCCcc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAH-------NDNIETCFVVGDEEFLPLKERYA  162 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~-------~~~~~~~~~~~D~e~LPf~~~sf  162 (171)
                      .+..+|||||||+|.++..++...+..+++|+|+|++|++.|++......       ....++.++++|...+|+.+..+
T Consensus       150 ~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~~~~~g~~~~~i~~~~gd~~~~~~~~~~~  229 (328)
T d1nw3a_         150 TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKWMKWYGKKHAEYTLERGDFLSEEWRERIA  229 (328)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEEECCTTSHHHHHHHH
T ss_pred             CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHhhhccccCCceEEEECcccccccccccC
Confidence            56789999999999999998876677899999999999999976432110       12346889999999999988766


Q ss_pred             --ceEEEec
Q 030823          163 --CRFFVLA  169 (171)
Q Consensus       163 --DlV~s~~  169 (171)
                        |+|+++.
T Consensus       230 ~advi~~~~  238 (328)
T d1nw3a_         230 NTSVIFVNN  238 (328)
T ss_dssp             HCSEEEECC
T ss_pred             cceEEEEcc
Confidence              6677654

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.10  E-value=1.9e-10  Score=90.15  Aligned_cols=74  Identities=15%  Similarity=0.151  Sum_probs=61.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ++.++|||||||+|.++..|++.  .++|+++|.++++++.|++...    ...++.++++|...-..+.+.||.|++.+
T Consensus        69 ~~g~~VLdIG~GsGy~ta~La~l--~~~V~aiE~~~~~~~~A~~~~~----~~~nv~~~~~d~~~g~~~~~pfD~Iiv~~  142 (224)
T d1vbfa_          69 HKGQKVLEIGTGIGYYTALIAEI--VDKVVSVEINEKMYNYASKLLS----YYNNIKLILGDGTLGYEEEKPYDRVVVWA  142 (224)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEEESCHHHHHHHHHHHT----TCSSEEEEESCGGGCCGGGCCEEEEEESS
T ss_pred             cccceEEEecCCCCHHHHHHHHH--hcccccccccHHHHHHHHHHHh----cccccccccCchhhcchhhhhHHHHHhhc
Confidence            56789999999999999999884  4799999999999999987532    33478889999776555678899999865

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.7e-10  Score=94.22  Aligned_cols=77  Identities=13%  Similarity=0.063  Sum_probs=60.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEecc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +..+|||||||+|.++..+++.+ ..+|+++|.|+ |+..+++.... .....++.++.++.+.+++++++||+|++..+
T Consensus        38 ~~~~VLDlGcGtG~ls~~aa~~G-a~~V~avd~s~-~~~~a~~~~~~-~~~~~~i~~i~~~~~~l~~~~~~~D~i~se~~  114 (328)
T d1g6q1_          38 KDKIVLDVGCGTGILSMFAAKHG-AKHVIGVDMSS-IIEMAKELVEL-NGFSDKITLLRGKLEDVHLPFPKVDIIISEWM  114 (328)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTC-CSEEEEEESST-HHHHHHHHHHH-TTCTTTEEEEESCTTTSCCSSSCEEEEEECCC
T ss_pred             CcCEEEEeCCCCCHHHHHHHHhC-CCEEEEEeCCH-HHHHHHHHHHH-hCccccceEEEeehhhccCcccceeEEEEEec
Confidence            45899999999999998888754 46999999996 66676654321 12233688899999999999999999998543

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=9.8e-11  Score=92.97  Aligned_cols=78  Identities=8%  Similarity=0.052  Sum_probs=52.7

Q ss_pred             CeEEEEcCCCcHHHHHHhh----cCC--CcEEEEEeCCHHHHHHHHHhhhhh-ccCCCceeEEEccCC------CCCCCC
Q 030823           93 PTALCLGGSLEAVRRLLRG----RGG--IEKLIMMDTSYDMLKLCKDAQQDA-HNDNIETCFVVGDEE------FLPLKE  159 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~----~~~--~~~v~gvD~S~~mL~~a~~~~~~~-~~~~~~~~~~~~D~e------~LPf~~  159 (171)
                      .+|||||||+|.++..|++    .++  ...++|+|+|+.|++.+++..... ....+...+...+.+      ..++++
T Consensus        42 ~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (280)
T d1jqea_          42 IKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKISNLENVKFAWHKETSSEYQSRMLEKKEL  121 (280)
T ss_dssp             EEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTCCSCTTEEEEEECSCHHHHHHHHTTSSSC
T ss_pred             CeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhccccccccccchhhhhhhhcchhcccCCC
Confidence            4799999999998777653    222  247899999999999998754210 011122334444433      347789


Q ss_pred             CccceEEEecc
Q 030823          160 RYACRFFVLAL  170 (171)
Q Consensus       160 ~sfDlV~s~~~  170 (171)
                      ++||+|++..+
T Consensus       122 ~~fD~I~~~~~  132 (280)
T d1jqea_         122 QKWDFIHMIQM  132 (280)
T ss_dssp             CCEEEEEEESC
T ss_pred             CceeEEEEccc
Confidence            99999999753

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=99.08  E-value=1.7e-10  Score=92.99  Aligned_cols=77  Identities=17%  Similarity=0.047  Sum_probs=62.6

Q ss_pred             cccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCCCCccceEE
Q 030823           88 CRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        88 i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      +.....+|||+|||+|-++..++...+..+|+++|+|+..++.|++...   ..+. ++.++.+|... +++++.||+|+
T Consensus       105 ~~~~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~---~~~~~~v~~~~~d~~~-~~~~~~fDlIv  180 (274)
T d2b3ta1         105 LPEQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQ---HLAIKNIHILQSDWFS-ALAGQQFAMIV  180 (274)
T ss_dssp             SCSSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHH---HHTCCSEEEECCSTTG-GGTTCCEEEEE
T ss_pred             hcccccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHH---HhCcccceeeeccccc-ccCCCceeEEE
Confidence            3455678999999999999999877777899999999999999987443   2233 58888899754 56678999999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ||
T Consensus       181 sN  182 (274)
T d2b3ta1         181 SN  182 (274)
T ss_dssp             EC
T ss_pred             ec
Confidence            98

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=1.2e-10  Score=90.67  Aligned_cols=45  Identities=9%  Similarity=-0.032  Sum_probs=36.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      .+..+|||||||+|.++..+... ...+|+|+|+|+.|++.|++..
T Consensus        50 ~~g~~vLDlGcG~G~~~~~~~~~-~~~~v~giD~S~~~i~~a~~~~   94 (257)
T d2a14a1          50 LQGDTLIDIGSGPTIYQVLAACD-SFQDITLSDFTDRNREELEKWL   94 (257)
T ss_dssp             CCEEEEEESSCTTCCGGGTTGGG-TEEEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCHhHHHHhcc-ccCcEEEecCCHHHHHHHHHHH
Confidence            34578999999999888766653 3458999999999999998754

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=99.04  E-value=5e-10  Score=89.05  Aligned_cols=78  Identities=13%  Similarity=0.024  Sum_probs=62.0

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ++..+|||+|||+|.++..|++. ++.++|+++|.+++|++.|++.... .....++.+..+|.... +++++||.|+..
T Consensus        84 ~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~-~~~~~nv~~~~~Di~~~-~~~~~fD~V~ld  161 (250)
T d1yb2a1          84 RPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSE-FYDIGNVRTSRSDIADF-ISDQMYDAVIAD  161 (250)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHT-TSCCTTEEEECSCTTTC-CCSCCEEEEEEC
T ss_pred             CCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHH-hcCCCceEEEEeeeecc-cccceeeeeeec
Confidence            57799999999999999999864 4668999999999999999875421 01123688888998776 468899999975


Q ss_pred             c
Q 030823          169 A  169 (171)
Q Consensus       169 ~  169 (171)
                      .
T Consensus       162 ~  162 (250)
T d1yb2a1         162 I  162 (250)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.03  E-value=4.5e-10  Score=91.33  Aligned_cols=76  Identities=12%  Similarity=-0.009  Sum_probs=57.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +..+|||||||+|.++..+++.+ ..+|+++|.|+.+. .+.+.... +.-.-++.++.+|.+.++++.++||+|++.-
T Consensus        33 ~~~~VLDiGcG~G~ls~~aa~~G-a~~V~avd~s~~~~-~a~~~~~~-n~~~~~v~~~~~~~~~~~~~~~~~D~ivs~~  108 (316)
T d1oria_          33 KDKVVLDVGSGTGILCMFAAKAG-ARKVIGIECSSISD-YAVKIVKA-NKLDHVVTIIKGKVEEVELPVEKVDIIISEW  108 (316)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTT-CSEEEEEECSTTHH-HHHHHHHH-TTCTTTEEEEESCTTTCCCSSSCEEEEEECC
T ss_pred             CcCEEEEEecCCcHHHHHHHHhC-CCEEEEEcCcHHHh-hhhhHHHH-hCCccccceEeccHHHcccccceeEEEeeee
Confidence            45789999999999999888754 35899999998654 44332211 1122258889999999999999999999854

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.00  E-value=7.5e-10  Score=89.45  Aligned_cols=82  Identities=12%  Similarity=0.023  Sum_probs=63.4

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC--CceeEEEccCCCCC
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN--IETCFVVGDEEFLP  156 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~--~~~~~~~~D~e~LP  156 (171)
                      +.|++++.  ..+..+|||||||.|.++..+++..+ .+|+|+++|++.++.++++..   ..+  ..+.+..+|...+|
T Consensus        52 ~~~~~~l~--l~~G~~VLDiGCG~G~~a~~~a~~~g-~~v~git~s~~Q~~~a~~~~~---~~g~~~~v~~~~~d~~~~~  125 (285)
T d1kpga_          52 DLALGKLG--LQPGMTLLDVGCGWGATMMRAVEKYD-VNVVGLTLSKNQANHVQQLVA---NSENLRSKRVLLAGWEQFD  125 (285)
T ss_dssp             HHHHTTTT--CCTTCEEEEETCTTSHHHHHHHHHHC-CEEEEEESCHHHHHHHHHHHH---TCCCCSCEEEEESCGGGCC
T ss_pred             HHHHHHcC--CCCCCEEEEecCcchHHHHHHHhcCC-cceEEEeccHHHHHHHHHHHH---hhhhhhhhHHHHhhhhccc
Confidence            45555553  35779999999999999999887543 699999999999999987643   233  25677888877665


Q ss_pred             CCCCccceEEEec
Q 030823          157 LKERYACRFFVLA  169 (171)
Q Consensus       157 f~~~sfDlV~s~~  169 (171)
                         ++||.|+|..
T Consensus       126 ---~~fD~i~si~  135 (285)
T d1kpga_         126 ---EPVDRIVSIG  135 (285)
T ss_dssp             ---CCCSEEEEES
T ss_pred             ---ccccceeeeh
Confidence               6899999875

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.00  E-value=3.5e-10  Score=88.69  Aligned_cols=94  Identities=13%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             hHHHHHHHHHHHHHHHhc-ccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEE
Q 030823           71 DSFVDAVAENLLDRLEDC-RKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFV  148 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i-~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~  148 (171)
                      ++.+-.++..+...+..+ .++..+|||+|||+|..+.+|++. ++.++|+++|+|++|++.+++..+    ...++..+
T Consensus        52 ~p~rSKlaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a~----~~~~~~~i  127 (227)
T d1g8aa_          52 NPNRSKLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIVE----ERRNIVPI  127 (227)
T ss_dssp             CTTTCHHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHS----SCTTEEEE
T ss_pred             CCCccHHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHHH----hcCCceEE
Confidence            444445555555444433 357799999999999999999864 467899999999999999987542    33356667


Q ss_pred             EccCC---CCCCCCCccceEEEe
Q 030823          149 VGDEE---FLPLKERYACRFFVL  168 (171)
Q Consensus       149 ~~D~e---~LPf~~~sfDlV~s~  168 (171)
                      ..|..   .++...+.+|+|++.
T Consensus       128 ~~d~~~~~~~~~~~~~vD~i~~d  150 (227)
T d1g8aa_         128 LGDATKPEEYRALVPKVDVIFED  150 (227)
T ss_dssp             ECCTTCGGGGTTTCCCEEEEEEC
T ss_pred             EEECCCcccccccccceEEEEEE
Confidence            77764   345566889988764

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=98.96  E-value=1.3e-09  Score=85.62  Aligned_cols=77  Identities=14%  Similarity=0.092  Sum_probs=58.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      .+..+|||||||+|.++..++++++..+++++|+ ++|++.+++.... .....++.++.+|... + .+.+||+|++..
T Consensus        79 ~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~-~~~~~~a~~~~~~-~~~~~rv~~~~~D~~~-~-~~~~~D~v~~~~  154 (253)
T d1tw3a2          79 TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKD-EGLSDRVDVVEGDFFE-P-LPRKADAIILSF  154 (253)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHH-TTCTTTEEEEECCTTS-C-CSSCEEEEEEES
T ss_pred             ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccC-HHHHHHHHHHHHH-hhcccchhhccccchh-h-cccchhheeecc
Confidence            3457999999999999999998888889999998 6789888765431 1112358889999743 2 246799999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       155 v  155 (253)
T d1tw3a2         155 V  155 (253)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=5.7e-09  Score=82.54  Aligned_cols=75  Identities=12%  Similarity=0.019  Sum_probs=55.1

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC------CCCCCcc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL------PLKERYA  162 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L------Pf~~~sf  162 (171)
                      +..++||+|||+|-++..|+.+.+..+++|+|+|+++++.|++...   ..+.  .+..+..+....      ...++.|
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~~---~n~l~~~~~~~~~~~~~~~~~~~~~~~~~~f  137 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVE---QNNLSDLIKVVKVPQKTLLMDALKEESEIIY  137 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---HTTCTTTEEEEECCTTCSSTTTSTTCCSCCB
T ss_pred             ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHHH---HhCCCcceeeeeeccHHhhhhhhhhcccCce
Confidence            3468999999999999999876667899999999999999987543   2232  344444443322      2346789


Q ss_pred             ceEEEe
Q 030823          163 CRFFVL  168 (171)
Q Consensus       163 DlV~s~  168 (171)
                      |+|+||
T Consensus       138 D~ivsN  143 (250)
T d2h00a1         138 DFCMCN  143 (250)
T ss_dssp             SEEEEC
T ss_pred             eEEEec
Confidence            999997

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.84  E-value=3.4e-09  Score=82.68  Aligned_cols=91  Identities=14%  Similarity=0.042  Sum_probs=65.2

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc------CCCcEEEEEeCCHHHHHHHHHhhhhh--c-cCCCceeEEE
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR------GGIEKLIMMDTSYDMLKLCKDAQQDA--H-NDNIETCFVV  149 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~------~~~~~v~gvD~S~~mL~~a~~~~~~~--~-~~~~~~~~~~  149 (171)
                      ..|.+.|..-.++.++|||||||||.++..|++.      ....+|+++|.++++++.+++.....  . ....++.++.
T Consensus        68 a~~l~~L~~~l~~g~~VLeIGtGsGY~ta~la~l~g~~g~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~~~~~~nv~~~~  147 (223)
T d1r18a_          68 AFALEYLRDHLKPGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDDRSMLDSGQLLIVE  147 (223)
T ss_dssp             HHHHHHTTTTCCTTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHHHHHHHHTSEEEEE
T ss_pred             HHHHHHHhhccCCCCeEEEecCCCCHHHHHHHHHhhhccCCcccEEEEEecCHHHHHHHHHhhhhcchhhcCccEEEEEe
Confidence            3455544322356789999999999998888652      12358999999999999997643210  0 0112578899


Q ss_pred             ccCCCCCCCCCccceEEEec
Q 030823          150 GDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus       150 ~D~e~LPf~~~sfDlV~s~~  169 (171)
                      +|......+.+.||.|++.+
T Consensus       148 ~d~~~~~~~~~~fD~Iiv~~  167 (223)
T d1r18a_         148 GDGRKGYPPNAPYNAIHVGA  167 (223)
T ss_dssp             SCGGGCCGGGCSEEEEEECS
T ss_pred             cccccccccccceeeEEEEe
Confidence            99888777788999999875

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=98.82  E-value=7.9e-09  Score=80.23  Aligned_cols=87  Identities=11%  Similarity=0.026  Sum_probs=67.2

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEEEccCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFVVGDEEFL  155 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~~~D~e~L  155 (171)
                      +...|.+.|.  .++..+|||||||||..+..|+... ..+|+++|..+++++.+++...   ..+ .++.++++|....
T Consensus        66 ~~a~ml~~L~--l~~g~~VLeIGsGsGY~taila~l~-g~~V~~ie~~~~l~~~a~~~l~---~~g~~nv~~~~gd~~~g  139 (215)
T d1jg1a_          66 MVAIMLEIAN--LKPGMNILEVGTGSGWNAALISEIV-KTDVYTIERIPELVEFAKRNLE---RAGVKNVHVILGDGSKG  139 (215)
T ss_dssp             HHHHHHHHHT--CCTTCCEEEECCTTSHHHHHHHHHH-CSCEEEEESCHHHHHHHHHHHH---HTTCCSEEEEESCGGGC
T ss_pred             hHHHHHHhhc--cCccceEEEecCCCChhHHHHHHhh-CceeEEEeccHHHHHHHHHHHH---HcCCceeEEEECccccC
Confidence            3344555443  3567899999999999999888642 2579999999999999987653   233 3788899998877


Q ss_pred             CCCCCccceEEEec
Q 030823          156 PLKERYACRFFVLA  169 (171)
Q Consensus       156 Pf~~~sfDlV~s~~  169 (171)
                      ..+.+.||.|++.+
T Consensus       140 ~~~~~pfD~Iiv~~  153 (215)
T d1jg1a_         140 FPPKAPYDVIIVTA  153 (215)
T ss_dssp             CGGGCCEEEEEECS
T ss_pred             CcccCcceeEEeec
Confidence            66789999998865

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=98.80  E-value=1.7e-08  Score=79.67  Aligned_cols=77  Identities=13%  Similarity=0.016  Sum_probs=57.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ....+|||||||+|.++..|++.++..+++++|+ ++++..+++.... ......+.++.+|... |+ +..||+|++..
T Consensus        80 ~~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~-~~~~~ri~~~~~d~~~-~~-p~~~D~v~~~~  155 (256)
T d1qzza2          80 SAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFAD-AGLADRVTVAEGDFFK-PL-PVTADVVLLSF  155 (256)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHH-TTCTTTEEEEECCTTS-CC-SCCEEEEEEES
T ss_pred             ccCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhh-cCCcceeeeeeeeccc-cc-cccchhhhccc
Confidence            3557899999999999999999888889999998 7899888765421 1111246777777643 44 35699999875


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       156 v  156 (256)
T d1qzza2         156 V  156 (256)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Bacillus subtilis, Ermc' [TaxId: 1423]

Probab=98.78  E-value=1.3e-08  Score=79.92  Aligned_cols=73  Identities=10%  Similarity=0.048  Sum_probs=59.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+.++|||||||+|.++..|.+.  ..+|+++|+++.|+...+++..    ...++.++.+|+-.+++++.....|++|
T Consensus        20 ~~~d~VlEIGpG~G~LT~~Ll~~--~~~v~avE~D~~l~~~l~~~~~----~~~n~~i~~~D~l~~~~~~~~~~~vv~N   92 (235)
T d1qama_          20 NEHDNIFEIGSGKGHFTLELVQR--CNFVTAIEIDHKLCKTTENKLV----DHDNFQVLNKDILQFKFPKNQSYKIFGN   92 (235)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH--SSEEEEECSCHHHHHHHHHHTT----TCCSEEEECCCGGGCCCCSSCCCEEEEE
T ss_pred             CCCCeEEEECCCchHHHHHHHhC--cCceEEEeeccchHHHHHHHhh----cccchhhhhhhhhhccccccccceeeee
Confidence            46799999999999999999985  3799999999999999987531    3346888999998888876655566665

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.77  E-value=2.4e-08  Score=81.83  Aligned_cols=98  Identities=14%  Similarity=0.058  Sum_probs=65.7

Q ss_pred             CCChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhh--------
Q 030823           68 RPNDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDA--------  138 (171)
Q Consensus        68 ~~~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~--------  138 (171)
                      +....+...=+..++..+. + .+..+|||+|||+|.++..|++. ++.++|+++|++++|++.|++.....        
T Consensus        77 r~tqiiypkD~~~Il~~l~-i-~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~~~~~~  154 (324)
T d2b25a1          77 RGTAITFPKDINMILSMMD-I-NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDSWKLSH  154 (324)
T ss_dssp             CSSCCCCHHHHHHHHHHHT-C-CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             CCCcccccccHHHHHHHhC-C-CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhhhhhhh
Confidence            3333333333444555443 3 57799999999999999999864 46789999999999999998754311        


Q ss_pred             -ccCCCceeEEEccCCCCC--CCCCccceEEE
Q 030823          139 -HNDNIETCFVVGDEEFLP--LKERYACRFFV  167 (171)
Q Consensus       139 -~~~~~~~~~~~~D~e~LP--f~~~sfDlV~s  167 (171)
                       ....-++.+..+|.....  +++.+||.|+.
T Consensus       155 ~~~~~~nv~~~~~di~~~~~~~~~~~fD~V~L  186 (324)
T d2b25a1         155 VEEWPDNVDFIHKDISGATEDIKSLTFDAVAL  186 (324)
T ss_dssp             SSCCCCCEEEEESCTTCCC-------EEEEEE
T ss_pred             hhccccceeEEecchhhcccccCCCCcceEee
Confidence             011125788999987664  56789999985

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.4e-08  Score=80.19  Aligned_cols=56  Identities=13%  Similarity=-0.040  Sum_probs=39.5

Q ss_pred             HHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           79 ENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        79 ~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.+..-.....++||||||+|.+....... ...+|+++|+|+.|++.+++..
T Consensus        42 ~~~~~~f~~g~~~g~~vLDiGcG~g~~~~~~~~~-~~~~v~~~D~S~~~i~~~~~~~   97 (263)
T d2g72a1          42 RCLAQTFATGEVSGRTLIDIGSGPTVYQLLSACS-HFEDITMTDFLEVNRQELGRWL   97 (263)
T ss_dssp             HHHHHHHHTSCSCCSEEEEETCTTCCGGGTTGGG-GCSEEEEECSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCcEEEEeccCCCHHHHHHhcc-cCCeEEEEeCCHHHHHHHHHHH
Confidence            3343333333345689999999999776544432 3469999999999999998643

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=98.74  E-value=8.5e-09  Score=76.96  Aligned_cols=74  Identities=12%  Similarity=0.023  Sum_probs=52.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCC----CCCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEF----LPLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~----LPf~~~sfDlV  165 (171)
                      ....+|||+|||+|.++.....++  .+++++|.++++++.+++...   ..+.+......+...    .....+.||+|
T Consensus        40 ~~g~~vLDl~~G~G~~~i~a~~~g--a~vv~vD~~~~a~~~~~~N~~---~~~~~~~v~~~~~d~~~~~~~~~~~~fD~I  114 (171)
T d1ws6a1          40 PRRGRFLDPFAGSGAVGLEAASEG--WEAVLVEKDPEAVRLLKENVR---RTGLGARVVALPVEVFLPEAKAQGERFTVA  114 (171)
T ss_dssp             TTCCEEEEETCSSCHHHHHHHHTT--CEEEEECCCHHHHHHHHHHHH---HHTCCCEEECSCHHHHHHHHHHTTCCEEEE
T ss_pred             cCCCeEEEeccccchhhhhhhhcc--chhhhcccCHHHHhhhhHHHH---hhccccceeeeehhcccccccccCCcccee
Confidence            355799999999999998877754  689999999999999986442   223332333343322    23456789999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      ++.
T Consensus       115 f~D  117 (171)
T d1ws6a1         115 FMA  117 (171)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            974

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=98.73  E-value=2.3e-08  Score=79.74  Aligned_cols=92  Identities=14%  Similarity=0.069  Sum_probs=65.2

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeE
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCF  147 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~  147 (171)
                      ..+...-+..++.++.  .++..+|||+|||+|.++..|++. ++.++|+++|.+++|++.|++...   ..+.  .+.+
T Consensus        85 qiiypkd~~~Ii~~l~--i~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~---~~g~~~~v~~  159 (266)
T d1o54a_          85 QIVYPKDSSFIAMMLD--VKEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLT---KWGLIERVTI  159 (266)
T ss_dssp             CCCCHHHHHHHHHHTT--CCTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHH---HTTCGGGEEE
T ss_pred             cccchHHHHHHHHhhC--CCCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHH---HhccccCcEE
Confidence            3333334445555543  357899999999999999999864 356899999999999999987553   2232  3555


Q ss_pred             EEccCCCCCCCCCccceEEEe
Q 030823          148 VVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ...|. ..++....||.|+..
T Consensus       160 ~~~d~-~~~~~~~~~D~V~~d  179 (266)
T d1o54a_         160 KVRDI-SEGFDEKDVDALFLD  179 (266)
T ss_dssp             ECCCG-GGCCSCCSEEEEEEC
T ss_pred             Eeccc-cccccccceeeeEec
Confidence            55664 335667899998864

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=98.69  E-value=9.4e-10  Score=87.16  Aligned_cols=83  Identities=10%  Similarity=0.127  Sum_probs=64.3

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL  157 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf  157 (171)
                      ++.+++.+.  ..+.++|||||||+|.++..|.+.+  .+|+++|++++|++.+++..    ....++.++.+|...+++
T Consensus        18 i~kIv~~~~--~~~~d~VLEIGpG~G~LT~~L~~~~--~~v~aIE~D~~l~~~l~~~~----~~~~n~~ii~~D~l~~~~   89 (245)
T d1yuba_          18 LNQIIKQLN--LKETDTVYEIGTGKGHLTTKLAKIS--KQVTSIELDSHLFNLSSEKL----KLNTRVTLIHQDILQFQF   89 (245)
T ss_dssp             HHHHHHHCC--CCSSEEEEECSCCCSSCSHHHHHHS--SEEEESSSSCSSSSSSSCTT----TTCSEEEECCSCCTTTTC
T ss_pred             HHHHHHhcC--CCCCCeEEEECCCccHHHHHHHhhc--CceeEeeecccchhhhhhhh----hhccchhhhhhhhhcccc
Confidence            344544332  2456899999999999999999853  79999999999998876432    123468889999999999


Q ss_pred             CCCccceEEEe
Q 030823          158 KERYACRFFVL  168 (171)
Q Consensus       158 ~~~sfDlV~s~  168 (171)
                      ++..++.|++|
T Consensus        90 ~~~~~~~vv~N  100 (245)
T d1yuba_          90 PNKQRYKIVGN  100 (245)
T ss_dssp             CCSSEEEEEEE
T ss_pred             ccceeeeEeee
Confidence            88888888876

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=98.69  E-value=1e-08  Score=74.95  Aligned_cols=74  Identities=9%  Similarity=-0.005  Sum_probs=57.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf~~~sfDlV~s  167 (171)
                      ...+|||+|||||.++...+.++ ..+|+++|.++++++.+++...   ..+.  ++.++.+|... ++...++||+|++
T Consensus        14 ~g~~vlDl~~GtG~~~iea~~rg-a~~v~~ve~~~~a~~~~~~n~~---~~~~~~~~~ii~~D~~~~l~~~~~~fDiIf~   89 (152)
T d2esra1          14 NGGRVLDLFAGSGGLAIEAVSRG-MSAAVLVEKNRKAQAIIQDNII---MTKAENRFTLLKMEAERAIDCLTGRFDLVFL   89 (152)
T ss_dssp             CSCEEEEETCTTCHHHHHHHHTT-CCEEEEECCCHHHHHHHHHHHH---TTTCGGGEEEECSCHHHHHHHBCSCEEEEEE
T ss_pred             CCCeEEEcCCccCHHHHHHHHhC-cceeeeehhchhhhhhhhhhhh---hcccccchhhhcccccccccccccccceeEe
Confidence            45799999999999998776654 3699999999999999887442   2333  47778888765 4566789999997


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus        90 D   90 (152)
T d2esra1          90 D   90 (152)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=98.67  E-value=3.5e-08  Score=78.39  Aligned_cols=75  Identities=13%  Similarity=0.067  Sum_probs=60.4

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCCCCCCCccceEE
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFLPLKERYACRFF  166 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~LPf~~~sfDlV~  166 (171)
                      ..+..+|||+|||+|.++..++..+ ..+|+++|+++++++.+++...   ..++  .+.++.+|...++. .+.||.|+
T Consensus       105 ~~~g~~VlD~~aG~G~~~l~~a~~~-~~~V~avd~n~~a~~~~~~N~~---~n~l~~~v~~~~~D~~~~~~-~~~~D~Ii  179 (260)
T d2frna1         105 AKPDELVVDMFAGIGHLSLPIAVYG-KAKVIAIEKDPYTFKFLVENIH---LNKVEDRMSAYNMDNRDFPG-ENIADRIL  179 (260)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHT-CCEEEEECCCHHHHHHHHHHHH---HTTCTTTEEEECSCTTTCCC-CSCEEEEE
T ss_pred             cCCccEEEECcceEcHHHHHHHHhC-CcEEEEecCCHHHHHHHHHHHH---HhCCCceEEEEEcchHHhcc-CCCCCEEE
Confidence            3567999999999999999888754 3699999999999999986442   2333  47788899988874 68899999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ++
T Consensus       180 ~~  181 (260)
T d2frna1         180 MG  181 (260)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.66  E-value=3e-08  Score=75.59  Aligned_cols=75  Identities=8%  Similarity=-0.038  Sum_probs=59.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC-----CCCCCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL-----PLKERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L-----Pf~~~sfDl  164 (171)
                      .+...+||++||+|..+..+.+..+.++|+|+|.+++|++.+++...   ..+.++.++.++...+     .+..++||.
T Consensus        22 ~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~---~~~~r~~~~~~~f~~~~~~~~~~~~~~vdg   98 (192)
T d1m6ya2          22 EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLK---EFSDRVSLFKVSYREADFLLKTLGIEKVDG   98 (192)
T ss_dssp             CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTG---GGTTTEEEEECCGGGHHHHHHHTTCSCEEE
T ss_pred             CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhc---cccccccchhHHHhhHHHHHHHcCCCCcce
Confidence            56789999999999999999887777899999999999999987643   1233577788776654     345688888


Q ss_pred             EEE
Q 030823          165 FFV  167 (171)
Q Consensus       165 V~s  167 (171)
                      |+.
T Consensus        99 Il~  101 (192)
T d1m6ya2          99 ILM  101 (192)
T ss_dssp             EEE
T ss_pred             eee
Confidence            863

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=98.56  E-value=1.5e-08  Score=82.58  Aligned_cols=73  Identities=11%  Similarity=0.022  Sum_probs=58.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCC----CCCCCCccceE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEF----LPLKERYACRF  165 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~----LPf~~~sfDlV  165 (171)
                      +..+|||++||||.++..++.  ...+|+++|+|+.+++.+++...   ..++ ++.++++|...    ++...+.||+|
T Consensus       145 ~g~rVLDl~~gtG~~s~~~a~--g~~~V~~vD~s~~al~~a~~n~~---~ngl~~~~~i~~d~~~~~~~~~~~~~~fD~V  219 (318)
T d1wxxa2         145 RGERALDVFSYAGGFALHLAL--GFREVVAVDSSAEALRRAEENAR---LNGLGNVRVLEANAFDLLRRLEKEGERFDLV  219 (318)
T ss_dssp             CEEEEEEETCTTTHHHHHHHH--HEEEEEEEESCHHHHHHHHHHHH---HTTCTTEEEEESCHHHHHHHHHHTTCCEEEE
T ss_pred             CCCeeeccCCCCcHHHHHHHh--cCCcEEeecchHHHHHHHHHHHH---HcCCCCcceeeccHHHHhhhhHhhhcCCCEE
Confidence            457999999999999998876  34799999999999999987543   2444 57888998754    45567899999


Q ss_pred             EEe
Q 030823          166 FVL  168 (171)
Q Consensus       166 ~s~  168 (171)
                      ++.
T Consensus       220 i~D  222 (318)
T d1wxxa2         220 VLD  222 (318)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            974

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=5.3e-08  Score=82.06  Aligned_cols=56  Identities=13%  Similarity=-0.039  Sum_probs=45.2

Q ss_pred             HHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           78 AENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        78 a~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ...|++++.  ..+.+++||||||+|.++..++...+.++++|+|+|+.|++.|++..
T Consensus       205 i~~Il~~l~--Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~  260 (406)
T d1u2za_         205 LSDVYQQCQ--LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQY  260 (406)
T ss_dssp             HHHHHHHTT--CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHH
T ss_pred             HHHHHHHhC--CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHH
Confidence            444555543  25678999999999999999987666779999999999999998654

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.55  E-value=5.6e-08  Score=79.23  Aligned_cols=75  Identities=15%  Similarity=0.043  Sum_probs=59.4

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC----CCCCCCccc
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF----LPLKERYAC  163 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~----LPf~~~sfD  163 (171)
                      .+..+|||+|||+|.++..++..+ ..+|+++|+|+++++.+++...   ..++  ++.++++|...    ++...+.||
T Consensus       144 ~~g~~VLDl~~g~G~~si~~a~~g-a~~V~~vD~s~~al~~a~~N~~---~ngl~~~~~~~~~d~~~~~~~~~~~~~~fD  219 (324)
T d2as0a2         144 QPGDRVLDVFTYTGGFAIHAAIAG-ADEVIGIDKSPRAIETAKENAK---LNGVEDRMKFIVGSAFEEMEKLQKKGEKFD  219 (324)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHH---HTTCGGGEEEEESCHHHHHHHHHHTTCCEE
T ss_pred             CCCCeeecccCcccchhhhhhhcC-CcEEEeecCCHHHHHHHHHHHH---HcCCCccceeeechhhhhhHHHHhccCCCC
Confidence            457899999999999999888753 4699999999999999987542   2343  57788888653    345678999


Q ss_pred             eEEEe
Q 030823          164 RFFVL  168 (171)
Q Consensus       164 lV~s~  168 (171)
                      +|++.
T Consensus       220 ~Vi~D  224 (324)
T d2as0a2         220 IVVLD  224 (324)
T ss_dssp             EEEEC
T ss_pred             chhcC
Confidence            99974

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.48  E-value=1e-07  Score=77.64  Aligned_cols=75  Identities=13%  Similarity=0.051  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC----CCCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L----Pf~~~sfDlV~  166 (171)
                      +..+|||++||||.++..++..+  ++|++||.|+.+++.|++...........+.|+++|+...    ....+.||+|+
T Consensus       132 ~~~rVLdlf~~tG~~sl~aa~~G--A~V~~VD~s~~al~~a~~N~~ln~~~~~~~~~i~~D~~~~l~~~~~~~~~fD~Ii  209 (309)
T d2igta1         132 RPLKVLNLFGYTGVASLVAAAAG--AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREERRGSTYDIIL  209 (309)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTT--CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHHHTCCBSEEE
T ss_pred             CCCeEEEecCCCcHHHHHHHhCC--CeEEEEeChHHHHHHHHHhhhhhcccCCcEEEEeCCHHHhHHHHhhcCCCCCEEE
Confidence            45799999999999999988743  6899999999999999874421011222578899987543    23457999999


Q ss_pred             E
Q 030823          167 V  167 (171)
Q Consensus       167 s  167 (171)
                      +
T Consensus       210 l  210 (309)
T d2igta1         210 T  210 (309)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=98.44  E-value=5.3e-07  Score=71.95  Aligned_cols=74  Identities=9%  Similarity=-0.008  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CCCCCCccceEEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LPLKERYACRFFV  167 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LPf~~~sfDlV~s  167 (171)
                      ...+++|+|||+|.++..+++. +..+|+++|+|++.+..|++...   ..+.  .+.+..+|... ++...+.||+|+|
T Consensus       110 ~~~~vld~g~GsG~i~~~la~~-~~~~v~a~Dis~~Al~~A~~Na~---~~~~~~~~~i~~~~~~~~~~~~~~~fDlIVs  185 (271)
T d1nv8a_         110 GIKTVADIGTGSGAIGVSVAKF-SDAIVFATDVSSKAVEIARKNAE---RHGVSDRFFVRKGEFLEPFKEKFASIEMILS  185 (271)
T ss_dssp             TCCEEEEESCTTSHHHHHHHHH-SSCEEEEEESCHHHHHHHHHHHH---HTTCTTSEEEEESSTTGGGGGGTTTCCEEEE
T ss_pred             cccEEEEeeeeeehhhhhhhhc-ccceeeechhhhhHHHHHHHHHH---HcCCCceeEEeecccccccccccCcccEEEE
Confidence            3468999999999999888763 66899999999999999986432   2333  34445566543 3444579999999


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      |
T Consensus       186 N  186 (271)
T d1nv8a_         186 N  186 (271)
T ss_dssp             C
T ss_pred             c
Confidence            8

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=98.40  E-value=9e-07  Score=72.05  Aligned_cols=87  Identities=9%  Similarity=0.059  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHhc--ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccC
Q 030823           76 AVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDE  152 (171)
Q Consensus        76 ~va~~l~~rL~~i--~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~  152 (171)
                      ..++.|.+.+...  ..+..+|||+-||+|.++..|++  ..++|+|+|.++++++.|++...   ..++ ++.|+.++.
T Consensus       195 ~~~e~l~~~v~~~~~~~~~~~vlDLycG~G~fsl~La~--~~~~V~gvE~~~~ai~~A~~na~---~n~i~n~~~~~~~~  269 (358)
T d1uwva2         195 GVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLAT--QAASVVGVEGVPALVEKGQQNAR---LNGLQNVTFYHENL  269 (358)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESCTTTTTHHHHHT--TSSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEECCT
T ss_pred             hhhhHHHHHHHHhhccCCCceEEEecccccccchhccc--cccEEEeccCcHHHHHHHHHhHH---hcccccceeeecch
Confidence            3444444443332  23567899999999999999988  45899999999999999986432   2344 688999887


Q ss_pred             CCC----CCCCCccceEEE
Q 030823          153 EFL----PLKERYACRFFV  167 (171)
Q Consensus       153 e~L----Pf~~~sfDlV~s  167 (171)
                      +..    +.....+|+|+.
T Consensus       270 ~~~~~~~~~~~~~~d~vil  288 (358)
T d1uwva2         270 EEDVTKQPWAKNGFDKVLL  288 (358)
T ss_dssp             TSCCSSSGGGTTCCSEEEE
T ss_pred             hhhhhhhhhhhccCceEEe
Confidence            643    334578999975

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=7.7e-07  Score=66.62  Aligned_cols=74  Identities=12%  Similarity=-0.051  Sum_probs=55.3

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCC-CCCCCCCccceEEEe
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEE-FLPLKERYACRFFVL  168 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e-~LPf~~~sfDlV~s~  168 (171)
                      ...+|||++||||.++.....++ ..+|+.+|.+++.++.+++....   .+. +...+.+|+. .+......||+|++.
T Consensus        43 ~~~~vLDlfaGsG~~giealsrG-a~~v~~VE~~~~a~~~~k~N~~~---~~~~~~~ii~~d~~~~l~~~~~~fDlIf~D  118 (183)
T d2fpoa1          43 VDAQCLDCFAGSGALGLEALSRY-AAGATLIEMDRAVSQQLIKNLAT---LKAGNARVVNSNAMSFLAQKGTPHNIVFVD  118 (183)
T ss_dssp             TTCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHH---TTCCSEEEECSCHHHHHSSCCCCEEEEEEC
T ss_pred             chhhhhhhhccccceeeeEEecC-cceeEEEEEeechhhHHHHHHhh---ccccceeeeeecccccccccccccCEEEEc
Confidence            34789999999999998776654 46999999999999998874431   222 4556777755 344567899999974

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=98.24  E-value=1e-06  Score=71.55  Aligned_cols=77  Identities=16%  Similarity=-0.095  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC----CCCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L----Pf~~~sfDlV~  166 (171)
                      +..+|||++||||.++...+.. ...+|+++|+|+.+++.+++....-.....++.++.+|+...    .-..+.||+|+
T Consensus       144 ~g~~VLdlf~~~G~~sl~aa~~-ga~~V~~vD~s~~a~~~a~~N~~~n~l~~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii  222 (317)
T d2b78a2         144 AGKTVLNLFSYTAAFSVAAAMG-GAMATTSVDLAKRSRALSLAHFEANHLDMANHQLVVMDVFDYFKYARRHHLTYDIII  222 (317)
T ss_dssp             BTCEEEEETCTTTHHHHHHHHT-TBSEEEEEESCTTHHHHHHHHHHHTTCCCTTEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCceeecCCCCcHHHHHHHhC-CCceEEEecCCHHHHHHHHHHHHHhcccCcceEEEEccHHHHHHHHHhhcCCCCEEE
Confidence            5689999999999999877653 446899999999999999875431011112577899997432    33457899999


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ..
T Consensus       223 ~D  224 (317)
T d2b78a2         223 ID  224 (317)
T ss_dssp             EC
T ss_pred             Ec
Confidence            63

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.21  E-value=1.5e-06  Score=66.79  Aligned_cols=75  Identities=12%  Similarity=0.068  Sum_probs=57.9

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCC-CC-----CCCCc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEF-LP-----LKERY  161 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~-LP-----f~~~s  161 (171)
                      ++.+|||+|||+|..+..|+... ..++|+++|.++++++.+++...   ..+.  .++++.+|... +|     +..+.
T Consensus        56 kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~~~~~~~a~~~~~---~~gl~~~i~l~~Gd~~e~l~~l~~~~~~~~  132 (214)
T d2cl5a1          56 SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMNPDYAAITQQMLN---FAGLQDKVTILNGASQDLIPQLKKKYDVDT  132 (214)
T ss_dssp             CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHH---HHTCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred             CCCEEEEEccCchhHHHHHHHhCCCccEEEEEeccHHHHHHHHHHHH---HcCCCccceeeeccccccccchhhcccccc
Confidence            44799999999999999998743 45799999999999999987543   2333  47888888653 33     44578


Q ss_pred             cceEEEe
Q 030823          162 ACRFFVL  168 (171)
Q Consensus       162 fDlV~s~  168 (171)
                      ||+|+.-
T Consensus       133 ~D~ifiD  139 (214)
T d2cl5a1         133 LDMVFLD  139 (214)
T ss_dssp             EEEEEEC
T ss_pred             cceeeec
Confidence            9999864

>d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: High level kasugamycin resistance protein KsgA
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=1.4e-06  Score=68.69  Aligned_cols=73  Identities=11%  Similarity=0.168  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC
Q 030823           77 VAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP  156 (171)
Q Consensus        77 va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP  156 (171)
                      +++.+++.+.  ..+.+.|||||||+|.++..|.+.  ..+|+++|+++.|++..++...    ...++..+.+|.-.++
T Consensus         9 ~~~~Iv~~~~--~~~~d~vlEIGpG~G~LT~~Ll~~--~~~v~aiEiD~~l~~~L~~~~~----~~~~~~ii~~D~l~~~   80 (252)
T d1qyra_           9 VIDSIVSAIN--PQKGQAMVEIGPGLAALTEPVGER--LDQLTVIELDRDLAARLQTHPF----LGPKLTIYQQDAMTFN   80 (252)
T ss_dssp             HHHHHHHHHC--CCTTCCEEEECCTTTTTHHHHHTT--CSCEEEECCCHHHHHHHHTCTT----TGGGEEEECSCGGGCC
T ss_pred             HHHHHHHhcC--CCCCCEEEEECCCchHHHHHHHcc--CCceEEEEeccchhHHHHHHhh----hccchhHHhhhhhhhc
Confidence            3444544432  245688999999999999999985  4799999999999999876321    2246777888887765


Q ss_pred             C
Q 030823          157 L  157 (171)
Q Consensus       157 f  157 (171)
                      +
T Consensus        81 ~   81 (252)
T d1qyra_          81 F   81 (252)
T ss_dssp             H
T ss_pred             c
Confidence            4

>d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Hypothetical protein Lmo1582
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.16  E-value=3.8e-06  Score=67.47  Aligned_cols=90  Identities=10%  Similarity=-0.088  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHhc--ccCCCeEEEEcCCCcHHHHHHhhc-----CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeE
Q 030823           75 DAVAENLLDRLEDC--RKTFPTALCLGGSLEAVRRLLRGR-----GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCF  147 (171)
Q Consensus        75 ~~va~~l~~rL~~i--~~~~~~vLDlGcGtG~l~~~L~~~-----~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~  147 (171)
                      +.+++.|.+.+..+  ..+..+|||.|||+|.++..+..+     ....+++|+|+++.++..|+....   ..+.....
T Consensus        99 ~~i~~~m~~l~~~~~~~~~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~---~~~~~~~~  175 (328)
T d2f8la1          99 DSIGFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGAD---LQRQKMTL  175 (328)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHH---HHTCCCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHH---Hhhhhhhh
Confidence            34444444333322  234578999999999998777431     123489999999999998864321   22334555


Q ss_pred             EEccCCCCCCCCCccceEEEe
Q 030823          148 VVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       148 ~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..+|.... .+...||+|++|
T Consensus       176 ~~~d~~~~-~~~~~fD~vi~N  195 (328)
T d2f8la1         176 LHQDGLAN-LLVDPVDVVISD  195 (328)
T ss_dssp             EESCTTSC-CCCCCEEEEEEE
T ss_pred             hccccccc-cccccccccccC
Confidence            66665433 345799999997

>d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Probable dimethyladenosine transferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.15  E-value=7.4e-06  Score=65.38  Aligned_cols=74  Identities=12%  Similarity=0.058  Sum_probs=55.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEe
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      .+.+.|||||+|+|.++..|.+.+  .+|+++++++.++...++.... .....++..+.+|.-..+++  .++.|++|
T Consensus        20 ~~~d~VlEIGPG~G~LT~~Ll~~~--~~v~aiE~D~~l~~~L~~~~~~-~~~~~~~~~i~~D~l~~~~~--~~~~vV~N   93 (278)
T d1zq9a1          20 RPTDVVLEVGPGTGNMTVKLLEKA--KKVVACELDPRLVAELHKRVQG-TPVASKLQVLVGDVLKTDLP--FFDTCVAN   93 (278)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHS--SEEEEEESCHHHHHHHHHHHTT-STTGGGEEEEESCTTTSCCC--CCSEEEEE
T ss_pred             CCCCEEEEECCCchHHHHHHHhcC--CcEEEEEEccchhHHHHHHHhh-hccccchhhhHHHHhhhhhh--hhhhhhcc
Confidence            356899999999999999999854  7999999999999998765421 01123577788998776654  34567665

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.10  E-value=2.9e-06  Score=63.47  Aligned_cols=76  Identities=14%  Similarity=0.009  Sum_probs=55.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCC----CCCCCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFL----PLKERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~L----Pf~~~sfDlV~  166 (171)
                      ...+|||++||||.++.....++ ..+|+++|.++++++.+++..... ....++.++++|....    .-+...||+|+
T Consensus        41 ~~~~vLDlfaGsG~~g~ea~srG-a~~v~~ve~~~~a~~~~~~N~~~~-~~~~~~~i~~~D~~~~l~~~~~~~~~fDlIf  118 (182)
T d2fhpa1          41 DGGMALDLYSGSGGLAIEAVSRG-MDKSICIEKNFAALKVIKENIAIT-KEPEKFEVRKMDANRALEQFYEEKLQFDLVL  118 (182)
T ss_dssp             SSCEEEETTCTTCHHHHHHHHTT-CSEEEEEESCHHHHHHHHHHHHHH-TCGGGEEEEESCHHHHHHHHHHTTCCEEEEE
T ss_pred             CCCEEEEcccccccccceeeecc-hhHHHHHHHHHHHHHHHHHHhhhh-hcccccccccccchhhhhhhcccCCCcceEE
Confidence            45899999999999999777654 469999999999999998644211 1122566788887542    22456899998


Q ss_pred             Ee
Q 030823          167 VL  168 (171)
Q Consensus       167 s~  168 (171)
                      ..
T Consensus       119 lD  120 (182)
T d2fhpa1         119 LD  120 (182)
T ss_dssp             EC
T ss_pred             ec
Confidence            63

>d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: DNA methylase TaqI, N-terminal domain
domain: DNA methylase TaqI, N-terminal domain
species: Thermus aquaticus [TaxId: 271]

Probab=98.05  E-value=1.3e-06  Score=65.59  Aligned_cols=80  Identities=11%  Similarity=-0.030  Sum_probs=55.0

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e  153 (171)
                      ..+++.|++.+.  ..+..+|||.|||+|.++..+.+. .....++|+|+.+..+..++           ....+.+|..
T Consensus         5 ~~i~~~m~~l~~--~~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~~~~~~-----------~~~~~~~~~~   71 (223)
T d2ih2a1           5 PEVVDFMVSLAE--APRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLPP-----------WAEGILADFL   71 (223)
T ss_dssp             HHHHHHHHHHCC--CCTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCCT-----------TEEEEESCGG
T ss_pred             HHHHHHHHHhcC--CCCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHHHhhcc-----------cceeeeeehh
Confidence            345666666543  245689999999999998877643 34468999999986654432           2344666655


Q ss_pred             CCCCCCCccceEEEe
Q 030823          154 FLPLKERYACRFFVL  168 (171)
Q Consensus       154 ~LPf~~~sfDlV~s~  168 (171)
                      ..+ ....||+|+++
T Consensus        72 ~~~-~~~~fd~ii~n   85 (223)
T d2ih2a1          72 LWE-PGEAFDLILGN   85 (223)
T ss_dssp             GCC-CSSCEEEEEEC
T ss_pred             ccc-cccccceeccc
Confidence            544 35789999987

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.1e-05  Score=62.04  Aligned_cols=78  Identities=13%  Similarity=-0.091  Sum_probs=58.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC-CCC-----CCCCccc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE-FLP-----LKERYAC  163 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e-~LP-----f~~~sfD  163 (171)
                      +..+|||||||+|.-+..+++.- ..++|+.+|.++++.+.|++....+ ...-.+.++++|+. .+|     ..+++||
T Consensus        59 ~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a-g~~~~i~~~~Gda~e~l~~~~~~~~~~~fD  137 (219)
T d2avda1          59 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA-EAEHKIDLRLKPALETLDELLAAGEAGTFD  137 (219)
T ss_dssp             TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-TCTTTEEEEESCHHHHHHHHHHTTCTTCEE
T ss_pred             CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc-CccceEEEEEeehhhcchhhhhhcccCCcc
Confidence            45899999999999999998643 3579999999999999998755321 11224777888863 332     3468999


Q ss_pred             eEEEec
Q 030823          164 RFFVLA  169 (171)
Q Consensus       164 lV~s~~  169 (171)
                      +|+..+
T Consensus       138 ~ifiD~  143 (219)
T d2avda1         138 VAVVDA  143 (219)
T ss_dssp             EEEECS
T ss_pred             EEEEeC
Confidence            999754

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.95  E-value=1.9e-05  Score=61.48  Aligned_cols=69  Identities=16%  Similarity=0.066  Sum_probs=51.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ....+|||||||+|.++..+.+++|.-+++.+|+ |+.++.+        ...-.+.++.+|... |++  ..|+|+...
T Consensus        80 ~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~--------~~~~ri~~~~gd~~~-~~p--~~D~~~l~~  147 (244)
T d1fp1d2          80 EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENA--------PPLSGIEHVGGDMFA-SVP--QGDAMILKA  147 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTC--------CCCTTEEEEECCTTT-CCC--CEEEEEEES
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecc-hhhhhcc--------CCCCCeEEecCCccc-ccc--cceEEEEeh
Confidence            4568999999999999999998888889999998 5555432        123357888898642 443  349988764


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       148 v  148 (244)
T d1fp1d2         148 V  148 (244)
T ss_dssp             S
T ss_pred             h
Confidence            3

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=97.91  E-value=4.5e-05  Score=58.17  Aligned_cols=94  Identities=12%  Similarity=0.023  Sum_probs=64.8

Q ss_pred             ChHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEE
Q 030823           70 NDSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFV  148 (171)
Q Consensus        70 ~~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~  148 (171)
                      .+.+.+.+.+-+.- +..+  +..+++|+|+|.|.-+..|+=..|..+++.+|.+..-+.-.++...   .-+. ++..+
T Consensus        47 ~~~~~rHi~DSl~~-~~~~--~~~~ilDiGsGaG~PGi~laI~~p~~~~~Lves~~KK~~FL~~~~~---~L~L~nv~v~  120 (207)
T d1jsxa_          47 NEMLVRHILDSIVV-APYL--QGERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQH---ELKLENIEPV  120 (207)
T ss_dssp             -CHHHHHHHHHHHH-GGGC--CSSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHH---HTTCSSEEEE
T ss_pred             HHHHHHHhcchHhh-hhhh--cCCceeeeeccCCceeeehhhhcccceEEEEecchHHHHHHHHHHH---HcCCcceeee
Confidence            45555555544321 1112  3579999999999888888755577899999999876655544321   2333 57778


Q ss_pred             EccCCCCCCCCCccceEEEecc
Q 030823          149 VGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       149 ~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      +...|.+.. +.+||+|+|=|+
T Consensus       121 ~~R~E~~~~-~~~fD~V~sRA~  141 (207)
T d1jsxa_         121 QSRVEEFPS-EPPFDGVISRAF  141 (207)
T ss_dssp             ECCTTTSCC-CSCEEEEECSCS
T ss_pred             ccchhhhcc-ccccceehhhhh
Confidence            889998763 578999998776

>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Isoflavone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.89  E-value=1.7e-05  Score=61.82  Aligned_cols=69  Identities=13%  Similarity=0.129  Sum_probs=52.3

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCCCccceEEEec
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKERYACRFFVLA  169 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~~sfDlV~s~~  169 (171)
                      ....+|||||||+|.++..+.++++.-+++..|+ ++.++.+.        ...++.++.+|... |.+  .+|+++...
T Consensus        79 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~vi~~~~--------~~~rv~~~~gD~f~-~~p--~aD~~~l~~  146 (244)
T d1fp2a2          79 DGLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS--------GSNNLTYVGGDMFT-SIP--NADAVLLKY  146 (244)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------CBTTEEEEECCTTT-CCC--CCSEEEEES
T ss_pred             cCceEEEEecCCccHHHHHHHHhCCCCeEEEecC-HHHHHhCc--------ccCceEEEecCccc-CCC--CCcEEEEEe
Confidence            3457899999999999999999888889999999 55554432        22358889999765 333  579998764


Q ss_pred             c
Q 030823          170 L  170 (171)
Q Consensus       170 ~  170 (171)
                      +
T Consensus       147 v  147 (244)
T d1fp2a2         147 I  147 (244)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=97.89  E-value=3.3e-05  Score=57.34  Aligned_cols=75  Identities=9%  Similarity=-0.037  Sum_probs=51.7

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC---CCCCCCCccceEEE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE---FLPLKERYACRFFV  167 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e---~LPf~~~sfDlV~s  167 (171)
                      ..+|||+-||||.++.....++ ..+|+.+|.+.+.++..++..+...........+..|..   ..+.....||+|++
T Consensus        44 ~~~vLDlFaGsG~~glEalSRG-A~~v~fVE~~~~a~~~ik~Ni~~l~~~~~~~~~~~~d~~~~l~~~~~~~~fDlIFl  121 (183)
T d2ifta1          44 QSECLDGFAGSGSLGFEALSRQ-AKKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQPQNQPHFDVVFL  121 (183)
T ss_dssp             TCEEEETTCTTCHHHHHHHHTT-CSEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSCCSSCCEEEEEE
T ss_pred             cceEeecccCccceeeeeeeec-ceeeEEeecccchhhhHhhHHhhhcccccccccccccccccccccccCCcccEEEe
Confidence            4689999999999998887765 569999999999999887644321112222333444432   22344567999986

>d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermus thermophilus [TaxId: 274]

Probab=97.88  E-value=1.8e-05  Score=63.94  Aligned_cols=80  Identities=18%  Similarity=0.173  Sum_probs=60.2

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh---ccCCCceeEEEccCCCC-CCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA---HNDNIETCFVVGDEEFL-PLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~---~~~~~~~~~~~~D~e~L-Pf~~~sfDlV  165 (171)
                      ....+||.||.|.|..+..+.+..+..+|+++|+++++++.+++.....   ...+.++..+++|+... .-.++.||+|
T Consensus        76 ~~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvI  155 (312)
T d1uira_          76 PEPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERTEERYDVV  155 (312)
T ss_dssp             SCCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHCCCCEEEE
T ss_pred             CCcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcCcccccCccCCCceEEEEchHHHHhhhcCCcccEE
Confidence            4568999999999999999987667789999999999999998643110   11234577788887543 3346789999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++-.
T Consensus       156 i~D~  159 (312)
T d1uira_         156 IIDL  159 (312)
T ss_dssp             EEEC
T ss_pred             EEeC
Confidence            9643

>d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Putative spermidine synthetase PF0127 (SpeE)
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=97.84  E-value=2.4e-05  Score=62.05  Aligned_cols=80  Identities=15%  Similarity=0.169  Sum_probs=58.7

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh--------ccCCCceeEEEccCCCCCCCCC
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA--------HNDNIETCFVVGDEEFLPLKER  160 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~--------~~~~~~~~~~~~D~e~LPf~~~  160 (171)
                      ..+..+||.||+|.|..+..+.+. +..+|+++|+++++++.+++.....        ...+.++..+++|+...--.++
T Consensus        70 ~~~p~~vLiiG~G~G~~~~~~l~~-~~~~v~~VEiD~~Vi~~a~~~f~~~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~  148 (276)
T d1mjfa_          70 HPKPKRVLVIGGGDGGTVREVLQH-DVDEVIMVEIDEDVIMVSKDLIKIDNGLLEAMLNGKHEKAKLTIGDGFEFIKNNR  148 (276)
T ss_dssp             SSCCCEEEEEECTTSHHHHHHTTS-CCSEEEEEESCHHHHHHHHHHTCTTTTHHHHHHTTCCSSEEEEESCHHHHHHHCC
T ss_pred             CCCCceEEEecCCchHHHHHHHHh-CCceEEEecCCHHHHHHHHHhhhhccchhhhhhccCCCCceEEEChHHHHHhccC
Confidence            356689999999999999988764 4579999999999999998643100        0123456778888754433467


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      .||+|++-.
T Consensus       149 ~yDvIi~D~  157 (276)
T d1mjfa_         149 GFDVIIADS  157 (276)
T ss_dssp             CEEEEEEEC
T ss_pred             CCCEEEEeC
Confidence            899999754

>d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=97.80  E-value=4.8e-05  Score=60.99  Aligned_cols=80  Identities=11%  Similarity=0.120  Sum_probs=60.5

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCC-CCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEE-FLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e-~LPf~~~sfDlV~  166 (171)
                      ..+.+||-||.|.|..++.+.+..+..+|+++|+++++++.+++....  ....+.++..+++|+. .+.-.++.||+|+
T Consensus        88 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi  167 (295)
T d1inla_          88 PNPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRKFKNEFDVII  167 (295)
T ss_dssp             SSCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGGCSSCEEEEE
T ss_pred             CCCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhhcccccCCCcEEEhhhHHHHHhcCCCCCCEEE
Confidence            456899999999999999998866778999999999999999874311  0112345677888864 3333467899999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +-.
T Consensus       168 ~D~  170 (295)
T d1inla_         168 IDS  170 (295)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            754

>d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.66  E-value=0.00011  Score=58.48  Aligned_cols=80  Identities=21%  Similarity=0.228  Sum_probs=60.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCC-CC-CCCCCccceE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEE-FL-PLKERYACRF  165 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e-~L-Pf~~~sfDlV  165 (171)
                      ....+||-||.|.|...+.+.+..+..+|+++|+++++++.+++-...  ....+.++..+.+|+. .+ -.+++.||+|
T Consensus        79 ~~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~~~~~~r~~i~~~Da~~~l~~~~~~~yDvI  158 (290)
T d1xj5a_          79 PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNAAEGSYDAV  158 (290)
T ss_dssp             SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTSCTTCEEEE
T ss_pred             CCCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhccccCCCcEEEEccHHHHHhhccccCccEE
Confidence            456899999999999999998876788999999999999999874310  0123445777888854 33 2445799999


Q ss_pred             EEec
Q 030823          166 FVLA  169 (171)
Q Consensus       166 ~s~~  169 (171)
                      ++-.
T Consensus       159 i~D~  162 (290)
T d1xj5a_         159 IVDS  162 (290)
T ss_dssp             EECC
T ss_pred             EEcC
Confidence            9754

>d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Bacillus subtilis [TaxId: 1423]

Probab=97.65  E-value=0.00013  Score=57.62  Aligned_cols=80  Identities=16%  Similarity=0.134  Sum_probs=60.9

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      ....+||-||.|.|..++.+.+..+..+|+++|+.+++++.+++....  ....+.++..+.+|+.. +--.++.||+|+
T Consensus        74 ~~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~~~~~~~~~d~r~~i~~~D~~~~l~~~~~~yDvIi  153 (274)
T d1iy9a_          74 PNPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAKSENQYDVIM  153 (274)
T ss_dssp             SSCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHTCCSCEEEEE
T ss_pred             CCcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhChhhcccccCCCeEEEechHHHHHhhcCCCCCEEE
Confidence            456899999999999999998866778999999999999999874310  01234567778888653 333467899999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +-.
T Consensus       154 ~D~  156 (274)
T d1iy9a_         154 VDS  156 (274)
T ss_dssp             ESC
T ss_pred             EcC
Confidence            754

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.62  E-value=5.4e-05  Score=58.42  Aligned_cols=76  Identities=14%  Similarity=-0.001  Sum_probs=58.0

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcC-CCcEEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCC-CCC------CCCC
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRG-GIEKLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEE-FLP------LKER  160 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~-~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e-~LP------f~~~  160 (171)
                      +..+|||+|+++|.-+..+++.. ..++|+.+|.+++..+.|++...   ..+.  .+.++++++. .+|      ..++
T Consensus        59 ~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~---~~g~~~~i~~~~g~a~~~L~~l~~~~~~~~  135 (227)
T d1susa1          59 NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIK---KAGVDHKIDFREGPALPVLDEMIKDEKNHG  135 (227)
T ss_dssp             TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHH---HTTCGGGEEEEESCHHHHHHHHHHCGGGTT
T ss_pred             CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHH---HhccccceeeeehHHHHHHHHHHhccccCC
Confidence            45899999999999999998543 35899999999999999987553   2333  4778888864 333      1357


Q ss_pred             ccceEEEec
Q 030823          161 YACRFFVLA  169 (171)
Q Consensus       161 sfDlV~s~~  169 (171)
                      +||+|+.-+
T Consensus       136 ~fD~iFiDa  144 (227)
T d1susa1         136 SYDFIFVDA  144 (227)
T ss_dssp             CBSEEEECS
T ss_pred             ceeEEEecc
Confidence            899999753

>d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: MraW-like putative methyltransferases
domain: TM0872, methyltransferase domain
species: Thermus thermophilus [TaxId: 274]

Probab=97.57  E-value=0.00015  Score=54.06  Aligned_cols=71  Identities=13%  Similarity=-0.034  Sum_probs=53.5

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCccc
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERYAC  163 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~sfD  163 (171)
                      ..+.+.++|..||.|..+..+.+.  .++|+|+|..++++..+++.      ....+.++.+....+.     +..+.+|
T Consensus        16 ~~~g~~~vD~T~G~GGhs~~iL~~--~~~viaiD~D~~ai~~a~~~------~~~~~~~~~~~f~~~~~~l~~~~~~~vd   87 (182)
T d1wg8a2          16 VRPGGVYVDATLGGAGHARGILER--GGRVIGLDQDPEAVARAKGL------HLPGLTVVQGNFRHLKRHLAALGVERVD   87 (182)
T ss_dssp             CCTTCEEEETTCTTSHHHHHHHHT--TCEEEEEESCHHHHHHHHHT------CCTTEEEEESCGGGHHHHHHHTTCSCEE
T ss_pred             CCCCCEEEEeCCCCcHHHHHHhcc--cCcEEEEhhhhhHHHHHhhc------cccceeEeehHHHHHHHHHHHcCCCccC
Confidence            356789999999999999999884  47999999999999999763      2234666666544432     3446788


Q ss_pred             eEEE
Q 030823          164 RFFV  167 (171)
Q Consensus       164 lV~s  167 (171)
                      .|+.
T Consensus        88 gIl~   91 (182)
T d1wg8a2          88 GILA   91 (182)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

>d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=0.00016  Score=57.45  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=60.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCC-CCCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEE-FLPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e-~LPf~~~sfDlV~  166 (171)
                      ..+.+||-||.|.|..++.+.+..+..+|+++|+.+++++.+++....  ....+.++..+.+|+. .+--.++.||+|+
T Consensus        77 ~~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~~~~~~~d~rv~i~~~Da~~~l~~~~~~yDvIi  156 (285)
T d2o07a1          77 PNPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQNQDAFDVII  156 (285)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHTCSSCEEEEE
T ss_pred             cCcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchhhccccCCCCceEEEccHHHHHhcCCCCCCEEE
Confidence            456899999999999999999866778999999999999999874310  0123446777888854 3333567999999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +-.
T Consensus       157 ~D~  159 (285)
T d2o07a1         157 TDS  159 (285)
T ss_dssp             EEC
T ss_pred             EcC
Confidence            754

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=97.51  E-value=5.8e-05  Score=58.35  Aligned_cols=55  Identities=18%  Similarity=0.088  Sum_probs=42.7

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCC
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEE  153 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e  153 (171)
                      ....+|||||||+|.++..+++++|.-+++.+|+.+ .++.+        .....+.++.+|..
T Consensus        80 ~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi~~~--------~~~~r~~~~~~d~~  134 (243)
T d1kyza2          80 EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPH-VIEDA--------PSYPGVEHVGGDMF  134 (243)
T ss_dssp             SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTT-TTTTC--------CCCTTEEEEECCTT
T ss_pred             cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHH-hhhhc--------ccCCceEEeccccc
Confidence            346789999999999999999988888999999954 33332        22345788888874

>d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Spermidine synthase
domain: Spermidine synthase
species: Caenorhabditis elegans [TaxId: 6239]

Probab=97.50  E-value=0.00012  Score=59.17  Aligned_cols=80  Identities=14%  Similarity=0.076  Sum_probs=59.8

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhh--hccCCCceeEEEccCCC-CCCCCCccceEE
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQD--AHNDNIETCFVVGDEEF-LPLKERYACRFF  166 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~--~~~~~~~~~~~~~D~e~-LPf~~~sfDlV~  166 (171)
                      ..+.+||-||.|.|.+++.+.+..++.+|+++|+.+++++.+++....  ....+.++..+.+|+.. +--.++.||+|+
T Consensus       105 ~~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~~~~~~~~~dprv~i~i~Da~~~l~~~~~~yDvII  184 (312)
T d2b2ca1         105 PDPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKNHKNEFDVII  184 (312)
T ss_dssp             SSCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHHCTTCEEEEE
T ss_pred             CCCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhchhhccccCCCCeEEEEchHHHHHHhCCCCCCEEE
Confidence            456899999999999999998866778999999999999999874310  01123456667777643 333467899999


Q ss_pred             Eec
Q 030823          167 VLA  169 (171)
Q Consensus       167 s~~  169 (171)
                      +-.
T Consensus       185 ~D~  187 (312)
T d2b2ca1         185 TDS  187 (312)
T ss_dssp             ECC
T ss_pred             EcC
Confidence            754

>d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: Transcription factor sc-mtTFB
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.36  E-value=0.00025  Score=57.04  Aligned_cols=74  Identities=9%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             HHHHHHHHHHHHhcc----cCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEc
Q 030823           75 DAVAENLLDRLEDCR----KTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVG  150 (171)
Q Consensus        75 ~~va~~l~~rL~~i~----~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~  150 (171)
                      +.+++.+++.+.--+    ....+|||||+|.|.++..|.+.+...+|+++|..+.+....++..     .+.++..+.+
T Consensus        23 ~~i~~~Iv~~~~l~~~~~~~~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~~L~~~~-----~~~~~~ii~~   97 (322)
T d1i4wa_          23 PTVYNKIFDKLDLTKTYKHPEELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYKFLNAKF-----EGSPLQILKR   97 (322)
T ss_dssp             HHHHHHHHHHHCGGGTCCCTTTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHHHHHHHT-----TTSSCEEECS
T ss_pred             HHHHHHHHHHhcCCccccccCCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc-----cCCCcEEEeC
Confidence            455566666543211    1456899999999999999987544569999999999999987653     2334555666


Q ss_pred             cCC
Q 030823          151 DEE  153 (171)
Q Consensus       151 D~e  153 (171)
                      |.-
T Consensus        98 D~l  100 (322)
T d1i4wa_          98 DPY  100 (322)
T ss_dssp             CTT
T ss_pred             chh
Confidence            653

>d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RNA methyltransferase FtsJ
domain: RNA methyltransferase FtsJ
species: Escherichia coli [TaxId: 562]

Probab=97.14  E-value=0.00042  Score=51.28  Aligned_cols=67  Identities=18%  Similarity=0.081  Sum_probs=48.1

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhh-cCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC--------CCC
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRG-RGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP--------LKE  159 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~-~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP--------f~~  159 (171)
                      .++..+||||||++|.+++.+.+ ......|+++|+.+ |            .+-.++.++.+|.....        +..
T Consensus        20 ~k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-~------------~~i~~~~~~~~d~~~~~~~~~~~~~~~~   86 (180)
T d1ej0a_          20 FKPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M------------DPIVGVDFLQGDFRDELVMKALLERVGD   86 (180)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C------------CCCTTEEEEESCTTSHHHHHHHHHHHTT
T ss_pred             cCCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-c------------cccCCceEeecccccchhhhhhhhhccC
Confidence            35678999999999999998865 34557999999854 1            12235667888776432        235


Q ss_pred             CccceEEEe
Q 030823          160 RYACRFFVL  168 (171)
Q Consensus       160 ~sfDlV~s~  168 (171)
                      +.||+|+|-
T Consensus        87 ~~~DlVlSD   95 (180)
T d1ej0a_          87 SKVQVVMSD   95 (180)
T ss_dssp             CCEEEEEEC
T ss_pred             cceeEEEec
Confidence            679999874

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=97.14  E-value=0.0017  Score=50.16  Aligned_cols=77  Identities=9%  Similarity=-0.016  Sum_probs=53.8

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC---CCccceEE
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK---ERYACRFF  166 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~---~~sfDlV~  166 (171)
                      ...+++|||+|.|.-+..|+=..+..+++.+|.+..-+.-.+....   .-+. ++..+...+|.++..   .++||+|+
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~---~L~L~n~~i~~~R~E~~~~~~~~~~~~D~v~  146 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSE---ALQLENTTFCHDRAETFGQRKDVRESYDIVT  146 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHH---HHTCSSEEEEESCHHHHTTCTTTTTCEEEEE
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHH---HhCCCCcEEEeehhhhccccccccccceEEE
Confidence            4578999999999888888754466899999999865544332211   1222 456677777766532   46899999


Q ss_pred             Eecc
Q 030823          167 VLAL  170 (171)
Q Consensus       167 s~~~  170 (171)
                      |=|+
T Consensus       147 sRAv  150 (239)
T d1xdza_         147 ARAV  150 (239)
T ss_dssp             EECC
T ss_pred             Ehhh
Confidence            9776

>d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: Type I restriction enzyme StySJI M protein
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=96.95  E-value=0.0016  Score=53.65  Aligned_cols=91  Identities=8%  Similarity=-0.118  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc----CC---------CcEEEEEeCCHHHHHHHHHhhhhhccC
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR----GG---------IEKLIMMDTSYDMLKLCKDAQQDAHND  141 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~----~~---------~~~v~gvD~S~~mL~~a~~~~~~~~~~  141 (171)
                      ..|++.|++.+.  ..+..+|+|-.||+|.+.....+.    ..         ...++|+|+++.+...|+-...-....
T Consensus       148 ~~Iv~~mv~ll~--~~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~l~g~~  225 (425)
T d2okca1         148 RPLIQAMVDCIN--PQMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYLHGIG  225 (425)
T ss_dssp             HHHHHHHHHHHC--CCTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHHTTCC
T ss_pred             hhhhHhhheecc--CcccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhhhcCCc
Confidence            455565655443  234689999999999998666431    11         135999999999999886432100011


Q ss_pred             CCceeEEEccCCCCCCCCCccceEEEe
Q 030823          142 NIETCFVVGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       142 ~~~~~~~~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ........+|.-.- .+...||+|++|
T Consensus       226 ~~~~~i~~~d~l~~-~~~~~fD~Ii~N  251 (425)
T d2okca1         226 TDRSPIVCEDSLEK-EPSTLVDVILAN  251 (425)
T ss_dssp             SSCCSEEECCTTTS-CCSSCEEEEEEC
T ss_pred             cccceeecCchhhh-hcccccceEEec
Confidence            11233345554332 346789999987

>d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=96.75  E-value=0.0013  Score=51.76  Aligned_cols=92  Identities=14%  Similarity=0.094  Sum_probs=60.9

Q ss_pred             HHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEcc
Q 030823           72 SFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGD  151 (171)
Q Consensus        72 ~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D  151 (171)
                      +++|..+...+..|.  ..+..+|||+++|.|.=+.+++.....+.|+++|+++.-+...++...   ..+.....++.+
T Consensus        85 ~vQD~sS~l~~~~L~--~~~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~~---r~g~~~~~~~~~  159 (284)
T d1sqga2          85 TVQDASAQGCMTWLA--PQNGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLK---RLGMKATVKQGD  159 (284)
T ss_dssp             EECCHHHHTHHHHHC--CCTTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHH---HTTCCCEEEECC
T ss_pred             EeccccccccccccC--ccccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhhh---cccccceeeecc
Confidence            344444444433332  356789999999999888888765556899999999988888776543   344444444444


Q ss_pred             CCCCC--CCCCccceEEEe
Q 030823          152 EEFLP--LKERYACRFFVL  168 (171)
Q Consensus       152 ~e~LP--f~~~sfDlV~s~  168 (171)
                      ....+  ..++.||.|+.=
T Consensus       160 ~~~~~~~~~~~~fd~IL~D  178 (284)
T d1sqga2         160 GRYPSQWCGEQQFDRILLD  178 (284)
T ss_dssp             TTCTHHHHTTCCEEEEEEE
T ss_pred             ccccchhcccccccEEEEe
Confidence            33322  345789999863

>d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: Hypothetical methyltransferase PH1374
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.62  E-value=0.0018  Score=51.67  Aligned_cols=93  Identities=8%  Similarity=-0.083  Sum_probs=62.6

Q ss_pred             hHHHHHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCC-CceeEE
Q 030823           71 DSFVDAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDN-IETCFV  148 (171)
Q Consensus        71 ~~l~~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~-~~~~~~  148 (171)
                      =+++|..+......| . ..+.++|||++||.|.=+.++... ...+.++++|.++.-+...++...   ..+ .++..+
T Consensus        98 ~~vQD~aS~l~~~~l-~-~~~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~---r~~~~~i~~~  172 (313)
T d1ixka_          98 IYIQEASSMYPPVAL-D-PKPGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLS---RLGVLNVILF  172 (313)
T ss_dssp             EEECCHHHHHHHHHH-C-CCTTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHH---HHTCCSEEEE
T ss_pred             EEEecccccchhhcc-c-CCccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHH---HHHhhccccc
Confidence            344454444333322 2 356789999999999877777542 245799999999999988765432   122 245556


Q ss_pred             EccCCCCCCCCCccceEEEe
Q 030823          149 VGDEEFLPLKERYACRFFVL  168 (171)
Q Consensus       149 ~~D~e~LPf~~~sfDlV~s~  168 (171)
                      ..|...++..++.||.|+.-
T Consensus       173 ~~d~~~~~~~~~~fD~ILvD  192 (313)
T d1ixka_         173 HSSSLHIGELNVEFDKILLD  192 (313)
T ss_dssp             SSCGGGGGGGCCCEEEEEEE
T ss_pred             cccccccccccccccEEEEc
Confidence            66777777778899999863

>d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: NOL1/NOP2/sun
domain: NOL1R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.56  E-value=0.0049  Score=48.54  Aligned_cols=76  Identities=7%  Similarity=-0.111  Sum_probs=54.6

Q ss_pred             cCCCeEEEEcCCCcHHHHHHhhc-CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-ceeEEEccCCCCCCC---CCccce
Q 030823           90 KTFPTALCLGGSLEAVRRLLRGR-GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-ETCFVVGDEEFLPLK---ERYACR  164 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l~~~L~~~-~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-~~~~~~~D~e~LPf~---~~sfDl  164 (171)
                      .+.++|||++||+|.=+.+++.. .+.+.|+++|+++.-+...++...   ..++ ++.....|...++..   .+.||.
T Consensus        93 ~~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~~~l~---r~g~~~~~~~~~d~~~~~~~~~~~~~fD~  169 (293)
T d2b9ea1          93 PPGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMATLLA---RAGVSCCELAEEDFLAVSPSDPRYHEVHY  169 (293)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHH---HTTCCSEEEEECCGGGSCTTCGGGTTEEE
T ss_pred             CccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHHHHHH---hcCccceeeeehhhhhhcccccccceeeE
Confidence            56789999999999877777642 345799999999998888776443   2344 455566776655432   267999


Q ss_pred             EEEe
Q 030823          165 FFVL  168 (171)
Q Consensus       165 V~s~  168 (171)
                      |+.-
T Consensus       170 VL~D  173 (293)
T d2b9ea1         170 ILLD  173 (293)
T ss_dssp             EEEC
T ss_pred             Eeec
Confidence            9864

>d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Chemotaxis receptor methyltransferase CheR, C-terminal domain
domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.50  E-value=0.0016  Score=48.19  Aligned_cols=43  Identities=14%  Similarity=0.071  Sum_probs=31.8

Q ss_pred             CCCeEEEEcCCCcH----HHHHHhhc----CCCcEEEEEeCCHHHHHHHHH
Q 030823           91 TFPTALCLGGSLEA----VRRLLRGR----GGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        91 ~~~~vLDlGcGtG~----l~~~L~~~----~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      +.-+|+++|||||.    ++..|.+.    ...-+|+|+|+|+.+|+.|++
T Consensus        24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~   74 (193)
T d1af7a2          24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARS   74 (193)
T ss_dssp             SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHH
T ss_pred             CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhc
Confidence            44689999999996    44444331    112379999999999999975

>d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap methylase
domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5
species: Dengue virus 2 [TaxId: 11060]

Probab=96.12  E-value=0.0035  Score=48.79  Aligned_cols=36  Identities=8%  Similarity=-0.009  Sum_probs=29.9

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCC
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTS  124 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S  124 (171)
                      .++..+|+|||||.|.++..+..+.+...|.|+|+-
T Consensus        64 ~~~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG   99 (257)
T d2p41a1          64 VTPEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG   99 (257)
T ss_dssp             SCCCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred             ccCCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence            356679999999999999999876666788888884

>d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CmcI-like
domain: Cephalosporin hydroxylase CmcI
species: Streptomyces clavuligerus [TaxId: 1901]

Probab=95.57  E-value=0.011  Score=45.11  Aligned_cols=70  Identities=20%  Similarity=0.083  Sum_probs=45.7

Q ss_pred             CCCeEEEEcCCCcHHHHHHh----hcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCcc
Q 030823           91 TFPTALCLGGSLEAVRRLLR----GRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYA  162 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~----~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sf  162 (171)
                      ++.+|||+|++.|.-+..++    ..+..++|+++|+.+.......       ....++.++.+|.....    +....+
T Consensus        80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~~~~~~~~-------~~~~~I~~i~gDs~~~~~~~~l~~~~~  152 (232)
T d2bm8a1          80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA-------SDMENITLHQGDCSDLTTFEHLREMAH  152 (232)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG-------GGCTTEEEEECCSSCSGGGGGGSSSCS
T ss_pred             CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcChhhhhhhh-------ccccceeeeecccccHHHHHHHHhcCC
Confidence            35789999999997665443    2235679999999765443321       12235778888764332    345578


Q ss_pred             ceEEE
Q 030823          163 CRFFV  167 (171)
Q Consensus       163 DlV~s  167 (171)
                      |+|+.
T Consensus       153 dlIfI  157 (232)
T d2bm8a1         153 PLIFI  157 (232)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            88775

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=94.75  E-value=0.025  Score=41.48  Aligned_cols=44  Identities=16%  Similarity=-0.009  Sum_probs=36.4

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||.+|||. |.++..+++.....+|+++|.+++.++.+++
T Consensus        24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~~   68 (195)
T d1kola2          24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAKA   68 (195)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhhh
Confidence            5678999999998 6666666655456799999999999999976

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=94.74  E-value=0.029  Score=43.25  Aligned_cols=75  Identities=12%  Similarity=0.109  Sum_probs=51.5

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhh-ccCCC------ceeEEEccC-CCCCCCCCcc
Q 030823           91 TFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDA-HNDNI------ETCFVVGDE-EFLPLKERYA  162 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~-~~~~~------~~~~~~~D~-e~LPf~~~sf  162 (171)
                      ...+|||.-||.|.-+..++..+  .+|+++|-++.+....++-.... .....      +++++.+|. +.+.-..++|
T Consensus        88 ~~~~VlD~TaGlG~Da~vlA~~G--~~V~~iEr~p~l~~ll~d~l~r~~~~~~~~~~~~~ri~li~~Ds~~~L~~~~~~~  165 (250)
T d2oyra1          88 YLPDVVDATAGLGRDAFVLASVG--CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRP  165 (250)
T ss_dssp             BCCCEEETTCTTCHHHHHHHHHT--CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTCSSCC
T ss_pred             CCCEEEECCCcccHHHHHHHhCC--CEEEEEccCHHHHHHHHHHHHHHHhCchhHHHHhhhheeecCcHHHHHhccCCCC
Confidence            34589999999999999998754  79999999997655443322111 01111      467888885 4454446789


Q ss_pred             ceEEE
Q 030823          163 CRFFV  167 (171)
Q Consensus       163 DlV~s  167 (171)
                      |+|+.
T Consensus       166 DvIYl  170 (250)
T d2oyra1         166 QVVYL  170 (250)
T ss_dssp             SEEEE
T ss_pred             CEEEE
Confidence            99974

>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359 {Rhodopseudomonas palustris [TaxId: 1076]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: RPA4359-like
domain: Hypothetical protein RPA4359
species: Rhodopseudomonas palustris [TaxId: 1076]

Probab=94.49  E-value=0.16  Score=40.44  Aligned_cols=89  Identities=6%  Similarity=-0.093  Sum_probs=51.1

Q ss_pred             HHHHHHHHHHHHHHhccc-CCCeEEEEcCCCcHHHHHHhhc-------CCCcEEEEEeCCHHHHHHHHHhhhhhccCCC-
Q 030823           73 FVDAVAENLLDRLEDCRK-TFPTALCLGGSLEAVRRLLRGR-------GGIEKLIMMDTSYDMLKLCKDAQQDAHNDNI-  143 (171)
Q Consensus        73 l~~~va~~l~~rL~~i~~-~~~~vLDlGcGtG~l~~~L~~~-------~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~-  143 (171)
                      +-..++..+......... ..-+|+|+|+|+|.++..+...       ...-+++.+|.|+.+...-++..     ... 
T Consensus        60 Fg~~ia~~~~~~~~~~~~~~~~~ivE~GaG~G~La~dil~~l~~~~~~~~~~~~~~vE~s~~L~~~Q~~~l-----~~~~  134 (365)
T d1zkda1          60 FGELLGLWSASVWKAADEPQTLRLIEIGPGRGTMMADALRALRVLPILYQSLSVHLVEINPVLRQKQQTLL-----AGIR  134 (365)
T ss_dssp             HHHHHHHHHHHHHHHTTCCSSEEEEEECCTTSHHHHHHHHHHTTSHHHHTTEEEEEECCCHHHHHHHHHHS-----TTCS
T ss_pred             HHHHHHHHHHHHHHHhCCCccceEEecCCcccHHHHhhhhhhcccccccccceEEEeccchhHHHHHHHHh-----cccc
Confidence            333444444443333332 3357999999999998766431       12347899999998776655432     222 


Q ss_pred             ceeEEEccCCCCCCCCCccceEEEecc
Q 030823          144 ETCFVVGDEEFLPLKERYACRFFVLAL  170 (171)
Q Consensus       144 ~~~~~~~D~e~LPf~~~sfDlV~s~~~  170 (171)
                      .+. +..+.+.+|-.   .-+|++|.+
T Consensus       135 ~i~-w~~~~~~~~~~---~g~iiaNE~  157 (365)
T d1zkda1         135 NIH-WHDSFEDVPEG---PAVILANEY  157 (365)
T ss_dssp             SEE-EESSGGGSCCS---SEEEEEESS
T ss_pred             cce-eccChhhcccC---CeEEEeccc
Confidence            333 34555555522   246666643

>d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N-6 DNA Methylase-like
domain: M.EcoKI
species: Escherichia coli [TaxId: 562]

Probab=94.15  E-value=0.023  Score=47.78  Aligned_cols=57  Identities=5%  Similarity=-0.038  Sum_probs=38.1

Q ss_pred             HHHHHHHHHHHHhcccCCCeEEEEcCCCcHHHHHHhh----cCC--------------CcEEEEEeCCHHHHHHHHH
Q 030823           75 DAVAENLLDRLEDCRKTFPTALCLGGSLEAVRRLLRG----RGG--------------IEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        75 ~~va~~l~~rL~~i~~~~~~vLDlGcGtG~l~~~L~~----~~~--------------~~~v~gvD~S~~mL~~a~~  133 (171)
                      ..|++.|++.+.  ..+..+|+|-.||+|.+.....+    ...              ...++|+|+.+.+...|+-
T Consensus       150 ~~Iv~~mv~ll~--~~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~~  224 (524)
T d2ar0a1         150 RPLIKTIIHLLK--PQPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALM  224 (524)
T ss_dssp             HHHHHHHHHHHC--CCTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHH
T ss_pred             cchhHhhhhccc--CccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHHH
Confidence            344555554432  23457899999999999765432    110              1268999999999988864

>d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TRM1-like
domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=93.51  E-value=0.055  Score=43.88  Aligned_cols=44  Identities=16%  Similarity=-0.046  Sum_probs=36.8

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+|||..||||..+...+...+..+|+++|+|++.++.+++..
T Consensus        46 ~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~   89 (375)
T d2dula1          46 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNV   89 (375)
T ss_dssp             CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHH
T ss_pred             CCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHH
Confidence            47899999999999987654345679999999999999997643

>d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.PvuII N4 cytosine-specific DNA methyltransferase
species: Proteus vulgaris [TaxId: 585]

Probab=93.43  E-value=0.11  Score=39.30  Aligned_cols=45  Identities=7%  Similarity=-0.028  Sum_probs=38.7

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.|||.=||+|..+..-...+  .+.+|+|++++.++.+.++.
T Consensus       248 s~~gdiVlDpF~GSGTT~~AA~~lg--R~~Ig~El~~~y~~~a~~Rl  292 (320)
T d1booa_         248 TEPDDLVVDIFGGSNTTGLVAERES--RKWISFEMKPEYVAASAFRF  292 (320)
T ss_dssp             CCTTCEEEETTCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHGGG
T ss_pred             ccCCCEEEecCCCCcHHHHHHHHcC--CcEEEEeCCHHHHHHHHHHH
Confidence            4577999999999999988777643  79999999999999998754

>d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: Methyltransferase mboII
species: Moraxella bovis [TaxId: 476]

Probab=92.76  E-value=0.19  Score=36.81  Aligned_cols=45  Identities=9%  Similarity=-0.054  Sum_probs=38.4

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQ  135 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~  135 (171)
                      ..+.+.|||.=||+|..+..-.+.+  .+.+|+|++++-++.|+++.
T Consensus       210 s~~gd~VlDpF~GSGTT~~aa~~~~--R~~ig~El~~~y~~~a~~Rl  254 (256)
T d1g60a_         210 SNPNDLVLDCFMGSGTTAIVAKKLG--RNFIGCDMNAEYVNQANFVL  254 (256)
T ss_dssp             CCTTCEEEESSCTTCHHHHHHHHTT--CEEEEEESCHHHHHHHHHHH
T ss_pred             CCCCCEEEECCCCchHHHHHHHHcC--CeEEEEeCCHHHHHHHHHHH
Confidence            4677999999999999988777643  79999999999999998653

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=92.69  E-value=0.098  Score=37.20  Aligned_cols=44  Identities=20%  Similarity=0.197  Sum_probs=35.0

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|||. |.+...+++.....+|+++|.+++-++.+++
T Consensus        27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~~   71 (182)
T d1vj0a2          27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAEE   71 (182)
T ss_dssp             CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCccchhheeccccccccccccccccccccccccc
Confidence            4578999999874 6666667665545689999999999999976

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=92.57  E-value=0.092  Score=37.46  Aligned_cols=44  Identities=9%  Similarity=-0.026  Sum_probs=36.6

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|||. |.++..+++.....+|+++|.+++-++.+++
T Consensus        26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~~   70 (174)
T d1jqba2          26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAKF   70 (174)
T ss_dssp             CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHHH
T ss_pred             CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHHh
Confidence            4678899999997 7888888775555689999999999999876

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.97  E-value=0.069  Score=37.63  Aligned_cols=43  Identities=7%  Similarity=-0.079  Sum_probs=34.0

Q ss_pred             cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|+| .|.++..+++.. ..+|+++|.+++.++.+++
T Consensus        26 ~~g~~vlI~GaG~vG~~a~q~ak~~-G~~vi~~~~~~~k~~~a~~   69 (168)
T d1piwa2          26 GPGKKVGIVGLGGIGSMGTLISKAM-GAETYVISRSSRKREDAMK   69 (168)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHH-TCEEEEEESSSTTHHHHHH
T ss_pred             CCCCEEEEECCCCcchhHHHHhhhc-cccccccccchhHHHHhhc
Confidence            567899999998 566666666543 3589999999999999876

>d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.95  E-value=0.13  Score=35.83  Aligned_cols=40  Identities=20%  Similarity=0.223  Sum_probs=31.3

Q ss_pred             eEEEEcCCC--cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           94 TALCLGGSL--EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        94 ~vLDlGcGt--G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      +|+-+|||-  |.++..|.+.+...+|+++|.+++.++.+.+
T Consensus         3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~~   44 (171)
T d2g5ca2           3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAVD   44 (171)
T ss_dssp             EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHH
T ss_pred             EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHHH
Confidence            588899874  3556677665555689999999999999976

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=91.13  E-value=0.39  Score=33.27  Aligned_cols=43  Identities=19%  Similarity=0.123  Sum_probs=33.8

Q ss_pred             cCCCeEEEEcCC-CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGS-LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcG-tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+||| .|.++..+++.. ..+|+++|.+++-++.+++
T Consensus        25 ~~g~~vlV~G~G~vG~~~~~~ak~~-Ga~vi~v~~~~~r~~~a~~   68 (170)
T d1e3ja2          25 QLGTTVLVIGAGPIGLVSVLAAKAY-GAFVVCTARSPRRLEVAKN   68 (170)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHT-TCEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEEcccccchhhHhhHhhh-cccccccchHHHHHHHHHH
Confidence            567899999988 456666666543 3699999999999999976

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=90.98  E-value=0.14  Score=36.50  Aligned_cols=44  Identities=14%  Similarity=0.076  Sum_probs=37.3

Q ss_pred             cCCCeEEEEcCCC-cHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSL-EAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGt-G~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|||+ |.++..+++......|+.+|.+++-++.+++
T Consensus        27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~~   71 (174)
T d1e3ia2          27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAKA   71 (174)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHHH
Confidence            4668999999998 8888888776556689999999999999976

>d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Type II DNA methylase
domain: m.RsrI N6 adenosine-specific DNA methyltransferase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=89.92  E-value=0.36  Score=35.66  Aligned_cols=46  Identities=13%  Similarity=0.036  Sum_probs=38.8

Q ss_pred             ccCCCeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhh
Q 030823           89 RKTFPTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQ  136 (171)
Q Consensus        89 ~~~~~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~  136 (171)
                      ..+.+.|||.=||+|..+..-...+  .+.+|+|++++..+.+.++..
T Consensus       205 s~~gdiVLDpF~GSGTT~~Aa~~lg--R~~ig~El~~~y~~~a~~Ri~  250 (279)
T d1eg2a_         205 SHPGSTVLDFFAGSGVTARVAIQEG--RNSICTDAAPVFKEYYQKQLT  250 (279)
T ss_dssp             SCTTCEEEETTCTTCHHHHHHHHHT--CEEEEEESSTHHHHHHHHHHH
T ss_pred             cCCCCEEEecCCCCcHHHHHHHHhC--CeEEEEeCCHHHHHHHHHHHH
Confidence            3577899999999999887776644  699999999999999987653

>d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNMT2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.19  E-value=0.27  Score=37.56  Aligned_cols=70  Identities=13%  Similarity=-0.014  Sum_probs=47.6

Q ss_pred             CCeEEEEcCCCcHHHHHHhhcCC-CcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCC---CCCccceEEE
Q 030823           92 FPTALCLGGSLEAVRRLLRGRGG-IEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPL---KERYACRFFV  167 (171)
Q Consensus        92 ~~~vLDlGcGtG~l~~~L~~~~~-~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf---~~~sfDlV~s  167 (171)
                      +.+|+|+-||.|-+...|...+- ..-+.++|+.+..++.-+..     .++  ...+++|.+.+..   +...+|+++.
T Consensus         2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~~n-----~~~--~~~~~~di~~~~~~~~~~~~~Dll~g   74 (343)
T d1g55a_           2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYKYN-----FPH--TQLLAKTIEGITLEEFDRLSFDMILM   74 (343)
T ss_dssp             CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHHHH-----CTT--SCEECSCGGGCCHHHHHHHCCSEEEE
T ss_pred             CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHHHH-----CCC--CCcccCchhhCCHhHcCCCCccEEEe
Confidence            36799999999999888866432 23578999999888876541     222  3446677776642   2246888875


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus        75 g   75 (343)
T d1g55a_          75 S   75 (343)
T ss_dssp             C
T ss_pred             e
Confidence            3

>d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: C5 cytosine-specific DNA methylase, DCM
domain: DNA methylase HaeIII
species: Haemophilus aegyptius [TaxId: 197575]

Probab=86.92  E-value=0.99  Score=33.77  Aligned_cols=67  Identities=9%  Similarity=0.026  Sum_probs=48.3

Q ss_pred             CeEEEEcCCCcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCCCCC-CccceEEEe
Q 030823           93 PTALCLGGSLEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLPLKE-RYACRFFVL  168 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LPf~~-~sfDlV~s~  168 (171)
                      .+|||+=||.|-+...|...+ ...+.++|+.+...+.-+..     .+   ...+++|...+...+ ..+|+++..
T Consensus         1 mk~~~lF~G~Gg~~~gl~~aG-~~~~~a~e~d~~a~~~~~~N-----~~---~~~~~~Di~~~~~~~~~~~dll~~g   68 (324)
T d1dcta_           1 MNLISLFSGAGGLDLGFQKAG-FRIICANEYDKSIWKTYESN-----HS---AKLIKGDISKISSDEFPKCDGIIGG   68 (324)
T ss_dssp             CEEEEESCSSCHHHHHHHHHT-CEEEEEEECCHHHHHHHHHH-----CC---SEEEESCTTTSCGGGSCCCSEEEEC
T ss_pred             CeEEEeCcCcCHHHHHHHHCC-CEEEEEEeCCHHHHHHHHHH-----CC---CCCccCChhhCCHhHcccccEEeec
Confidence            369999999999998887654 56788999999888765431     12   344678888875322 468888754

>d1lssa_ c.2.1.9 (A:) Ktn Mja218 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Potassium channel NAD-binding domain
domain: Ktn Mja218
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=86.27  E-value=1.7  Score=28.67  Aligned_cols=65  Identities=14%  Similarity=0.083  Sum_probs=41.6

Q ss_pred             eEEEEcCCCcHHHHHHhhcC--CCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC----CCCCccceEEE
Q 030823           94 TALCLGGSLEAVRRLLRGRG--GIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP----LKERYACRFFV  167 (171)
Q Consensus        94 ~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP----f~~~sfDlV~s  167 (171)
                      +|+-+|+  |.++..+.+..  ....|+.+|.+++.++.+.+.      .  ....+.||.....    ..-+..|.+++
T Consensus         2 ~IvI~G~--G~~G~~la~~L~~~g~~v~vid~d~~~~~~~~~~------~--~~~vi~Gd~~~~~~l~~~~i~~a~~vv~   71 (132)
T d1lssa_           2 YIIIAGI--GRVGYTLAKSLSEKGHDIVLIDIDKDICKKASAE------I--DALVINGDCTKIKTLEDAGIEDADMYIA   71 (132)
T ss_dssp             EEEEECC--SHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH------C--SSEEEESCTTSHHHHHHTTTTTCSEEEE
T ss_pred             EEEEECC--CHHHHHHHHHHHHCCCCcceecCChhhhhhhhhh------h--hhhhccCcccchhhhhhcChhhhhhhcc
Confidence            5666665  66776665421  336899999999999887652      1  2445778766442    12356777776


Q ss_pred             e
Q 030823          168 L  168 (171)
Q Consensus       168 ~  168 (171)
                      .
T Consensus        72 ~   72 (132)
T d1lssa_          72 V   72 (132)
T ss_dssp             C
T ss_pred             c
Confidence            4

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=85.76  E-value=0.51  Score=33.33  Aligned_cols=45  Identities=16%  Similarity=0.092  Sum_probs=34.5

Q ss_pred             cCCCeEEEEcCCCcH-HHHHHhhcCCCcEEEEEeCCHHHHHHHHHh
Q 030823           90 KTFPTALCLGGSLEA-VRRLLRGRGGIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~-l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      ++.++||-+|||..- ++..+.+.....+|+++|.+++-++.|++.
T Consensus        28 ~~g~tVlI~G~GgvGl~ai~~ak~~G~~~Vi~vd~~~~kl~~Ak~~   73 (176)
T d1d1ta2          28 KPGSTCVVFGLGGVGLSVIMGCKSAGASRIIGIDLNKDKFEKAMAV   73 (176)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHHH
T ss_pred             CCCCEEEEECCCchhHHHHHHHHHcCCceEEEecCcHHHHHHHHhc
Confidence            467899999998653 344445544557999999999999999863

>d1udca_ c.2.1.2 (A:) Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Uridine diphosphogalactose-4-epimerase (UDP-galactose 4-epimerase)
species: Escherichia coli [TaxId: 562]

Probab=85.13  E-value=0.41  Score=36.69  Aligned_cols=70  Identities=16%  Similarity=0.121  Sum_probs=45.2

Q ss_pred             CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeC----CHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----CCCCc
Q 030823           93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDT----SYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----LKERY  161 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~----S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----f~~~s  161 (171)
                      ++||-.| |+|.++..|....  ...+|+++|.    ....+......      ...++.++.+|.....     +.+..
T Consensus         1 MKiLItG-~tGfIG~~l~~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~------~~~~~~~~~~Dl~d~~~l~~~~~~~~   73 (338)
T d1udca_           1 MRVLVTG-GSGYIGSHTCVQLLQNGHDVIILDNLCNSKRSVLPVIERL------GGKHPTFVEGDIRNEALMTEILHDHA   73 (338)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCSSCCTTHHHHHHHH------HTSCCEEEECCTTCHHHHHHHHHHTT
T ss_pred             CEEEEEC-CCCHHHHHHHHHHHHCcCEEEEEECCCCcchhhHHHHHhh------cCCCCEEEEeecCCHHHHHHHHhccC
Confidence            4688888 9999888775311  2368999984    34444443221      2235778889876553     34557


Q ss_pred             cceEEEec
Q 030823          162 ACRFFVLA  169 (171)
Q Consensus       162 fDlV~s~~  169 (171)
                      +|.|+.+|
T Consensus        74 ~d~ViHlA   81 (338)
T d1udca_          74 IDTVIHFA   81 (338)
T ss_dssp             CSEEEECC
T ss_pred             CCEEEECC
Confidence            89998765

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=84.43  E-value=0.66  Score=32.15  Aligned_cols=44  Identities=16%  Similarity=0.141  Sum_probs=33.5

Q ss_pred             cCCCeEEEEcCCCcHH-HHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSLEAV-RRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGtG~l-~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|||.+-+ ...+........|+++|.+++-++.+++
T Consensus        27 k~g~~VlI~G~Gg~g~~~~~~~~~~g~~~Vi~~~~~~~rl~~a~~   71 (175)
T d1cdoa2          27 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAKV   71 (175)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHHH
T ss_pred             CCCCEEEEEecCCccchHHHHHHHHhhchheeecchHHHHHHHHH
Confidence            5678999999998544 3334444455799999999999999876

>d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=82.46  E-value=1.1  Score=30.75  Aligned_cols=39  Identities=15%  Similarity=0.002  Sum_probs=29.7

Q ss_pred             CeEEEEcCC--CcHHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           93 PTALCLGGS--LEAVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        93 ~~vLDlGcG--tG~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++|.-||+|  .+.++..|.+.  ..+|++.|.+++.++.+.+
T Consensus         1 MkI~iIG~G~mG~~lA~~l~~~--g~~V~~~d~~~~~~~~a~~   41 (165)
T d2f1ka2           1 MKIGVVGLGLIGASLAGDLRRR--GHYLIGVSRQQSTCEKAVE   41 (165)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHT--TCEEEEECSCHHHHHHHHH
T ss_pred             CEEEEEeecHHHHHHHHHHHHC--CCEEEEEECCchHHHHHHH
Confidence            357788887  45566677663  3699999999999998875

>d1o9ga_ c.66.1.29 (A:) rRNA methyltransferase AviRa {Streptomyces viridochromogenes [TaxId: 1938]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase AviRa
domain: rRNA methyltransferase AviRa
species: Streptomyces viridochromogenes [TaxId: 1938]

Probab=81.71  E-value=0.22  Score=37.97  Aligned_cols=52  Identities=4%  Similarity=-0.116  Sum_probs=32.0

Q ss_pred             EEEEEeCCHHHHHHHHHhhhhhccCCC--ceeEEEccCCCC-CC----CCCccceEEEe
Q 030823          117 KLIMMDTSYDMLKLCKDAQQDAHNDNI--ETCFVVGDEEFL-PL----KERYACRFFVL  168 (171)
Q Consensus       117 ~v~gvD~S~~mL~~a~~~~~~~~~~~~--~~~~~~~D~e~L-Pf----~~~sfDlV~s~  168 (171)
                      .++|.|+++++++.|++...++...++  .+.+...|.... |+    ++...++|++|
T Consensus       116 ~i~G~D~d~~ai~~A~~~r~n~~~Agl~~~i~i~~~d~f~~~~~~~~~~~~~~GlIVtN  174 (249)
T d1o9ga_         116 ERFGKPSYLEAAQAARRLRERLTAEGGALPCAIRTADVFDPRALSAVLAGSAPDVVLTD  174 (249)
T ss_dssp             HHHCCHHHHHHHHHHHHHHHHHHHTTSSCCEEEEECCTTCGGGHHHHHTTCCCSEEEEE
T ss_pred             CccccccCHHHHHHHHHHHHHHHHcCCCceeeeeecchhccCcchhccCCCCCCEEEeC
Confidence            567899999999888542222233444  355666775433 21    24567899987

>d2py6a1 c.66.1.56 (A:14-408) Methyltransferase FkbM {Methylobacillus flagellatus [TaxId: 405]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: FkbM-like
domain: Methyltransferase FkbM
species: Methylobacillus flagellatus [TaxId: 405]

Probab=81.20  E-value=1.2  Score=35.87  Aligned_cols=44  Identities=18%  Similarity=0.184  Sum_probs=34.6

Q ss_pred             CCCeEEEEcCCCcHHHHHHhhc--CCCcEEEEEeCCHHHHHHHHHh
Q 030823           91 TFPTALCLGGSLEAVRRLLRGR--GGIEKLIMMDTSYDMLKLCKDA  134 (171)
Q Consensus        91 ~~~~vLDlGcGtG~l~~~L~~~--~~~~~v~gvD~S~~mL~~a~~~  134 (171)
                      +...++|+|+-.|..+..+...  ....+|+++|+++...+..++.
T Consensus       212 kn~vfIDVGAniG~~s~~f~~~~~~~~~kV~aFEP~p~n~~~LkkN  257 (395)
T d2py6a1         212 DSEKMVDCGASIGESLAGLIGVTKGKFERVWMIEPDRINLQTLQNV  257 (395)
T ss_dssp             SSCEEEEETCTTSHHHHHHHHHHTSCCSEEEEECCCHHHHHHHHHH
T ss_pred             CCCEEEECCcCCCHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHH
Confidence            4568999999999888766532  2346999999999998887653

>d1i24a_ c.2.1.2 (A:) Sulfolipid biosynthesis protein SQD1 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Sulfolipid biosynthesis protein SQD1
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=81.18  E-value=0.57  Score=36.46  Aligned_cols=70  Identities=11%  Similarity=-0.020  Sum_probs=42.4

Q ss_pred             CeEEEEcCCCcHHHHHHhhcC--CCcEEEEEeC-CH-------------------HHHHHHHHhhhhhccCCCceeEEEc
Q 030823           93 PTALCLGGSLEAVRRLLRGRG--GIEKLIMMDT-SY-------------------DMLKLCKDAQQDAHNDNIETCFVVG  150 (171)
Q Consensus        93 ~~vLDlGcGtG~l~~~L~~~~--~~~~v~gvD~-S~-------------------~mL~~a~~~~~~~~~~~~~~~~~~~  150 (171)
                      ++||-.| |+|.++.+|....  ...+|+++|. +.                   +.+.....      ..+.++.|+.+
T Consensus         2 ~kILVTG-atGfiG~~lv~~Ll~~g~~V~~iDnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~   74 (393)
T d1i24a_           2 SRVMVIG-GDGYCGWATALHLSKKNYEVCIVDNLVRRLFDHQLGLESLTPIASIHDRISRWKA------LTGKSIELYVG   74 (393)
T ss_dssp             CEEEEET-TTSHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTCCCSSCCCCHHHHHHHHHH------HHCCCCEEEES
T ss_pred             CEEEEEC-CCcHHHHHHHHHHHHCcCEEEEEecCCcccccccccccccccccchHHHHHHHHh------hcCCCcEEEEc
Confidence            5788888 7998887664311  2369999993 21                   22222211      11235778889


Q ss_pred             cCCCCC-----CCCCccceEEEec
Q 030823          151 DEEFLP-----LKERYACRFFVLA  169 (171)
Q Consensus       151 D~e~LP-----f~~~sfDlV~s~~  169 (171)
                      |.....     |.+..+|.|+..|
T Consensus        75 Dl~d~~~l~~~~~~~~~d~ViHlA   98 (393)
T d1i24a_          75 DICDFEFLAESFKSFEPDSVVHFG   98 (393)
T ss_dssp             CTTSHHHHHHHHHHHCCSEEEECC
T ss_pred             cCCCHHHHHHHHHhhcchheeccc
Confidence            876542     3445679888765

>d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Tropinone reductase
species: Jimsonweed (Datura stramonium), I [TaxId: 4076]

Probab=80.69  E-value=3.1  Score=30.73  Aligned_cols=73  Identities=19%  Similarity=0.068  Sum_probs=48.7

Q ss_pred             CCeEEEEcCCCc---HHHHHHhhcCCCcEEEEEeCCHHHHHHHHHhhhhhccCCCceeEEEccCCCCC-----------C
Q 030823           92 FPTALCLGGSLE---AVRRLLRGRGGIEKLIMMDTSYDMLKLCKDAQQDAHNDNIETCFVVGDEEFLP-----------L  157 (171)
Q Consensus        92 ~~~vLDlGcGtG---~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~~~~~~~~~~~~~~~~~~D~e~LP-----------f  157 (171)
                      ..++|-.|+..|   .++..|++.  ..+|+.+|.+++-++.+.+...   ..+....++.+|.....           .
T Consensus         6 gK~alITGas~GIG~aia~~la~~--G~~V~i~~r~~~~l~~~~~~~~---~~~~~~~~~~~D~s~~~~~~~~~~~~~~~   80 (258)
T d1ae1a_           6 GTTALVTGGSKGIGYAIVEELAGL--GARVYTCSRNEKELDECLEIWR---EKGLNVEGSVCDLLSRTERDKLMQTVAHV   80 (258)
T ss_dssp             TCEEEEESCSSHHHHHHHHHHHHT--TCEEEEEESCHHHHHHHHHHHH---HTTCCEEEEECCTTCHHHHHHHHHHHHHH
T ss_pred             CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHH---hcCCCceEEEeecCCHHHHHHHHHHHHHH
Confidence            468899998776   345555653  3799999999988877765432   34555666777765331           1


Q ss_pred             CCCccceEEEec
Q 030823          158 KERYACRFFVLA  169 (171)
Q Consensus       158 ~~~sfDlV~s~~  169 (171)
                      -++..|++++++
T Consensus        81 ~~g~idilinna   92 (258)
T d1ae1a_          81 FDGKLNILVNNA   92 (258)
T ss_dssp             TTSCCCEEEECC
T ss_pred             hCCCcEEEeccc
Confidence            135688888765

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.63  E-value=1.7  Score=29.92  Aligned_cols=44  Identities=20%  Similarity=0.163  Sum_probs=33.3

Q ss_pred             cCCCeEEEEcCCCc-HHHHHHhhcCCCcEEEEEeCCHHHHHHHHH
Q 030823           90 KTFPTALCLGGSLE-AVRRLLRGRGGIEKLIMMDTSYDMLKLCKD  133 (171)
Q Consensus        90 ~~~~~vLDlGcGtG-~l~~~L~~~~~~~~v~gvD~S~~mL~~a~~  133 (171)
                      ++.++||-+|||+. .++..+++.....+|+++|.+++-++.+++
T Consensus        25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~~   69 (171)
T d1pl8a2          25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAKE   69 (171)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHHH
Confidence            46689999999764 444444554445699999999999999976