Citrus Sinensis ID: 030897

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRLSC
cccccEEEccccccccccccHHHHHccccccccccccccccccccEEccccccccccccccccccccccEEccccccccccccccccccccccEEEccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccccccccccccccccccccc
ccccEEEEcccccHHHHccHHHHHHHccccHHcccccHHcHHHcEEEEccccccHcccccccccHHHccEEEccccHHHHcccHHcccHHHHHEEEccccccccccccHHHHHcccEEEccccccHHcccccHHHHHHccEEEccccHHHHccccccccccEEEccccc
mkslktlvlsgclklkkfpdivqvlgdrtdiRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSgllkfrefpektsskdQLLEIHLegtairglPASIELLSGNvllnlkdcknlkslpsttngLRSLRMLHLSGcsklknvpetlgkvESLEVRLSC
MKSLKTLVLsgclklkkfpdivqVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFRefpektsskdqLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSgcsklknvpetlgkveslevrlsc
MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRLSC
*****TLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFP******DQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSK********************
MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRLSC
MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRLSC
*KSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRLSC
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRLSC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query169 2.2.26 [Sep-21-2011]
O23530 1301 Protein SUPPRESSOR OF npr no no 0.869 0.112 0.375 2e-12
Q40392 1144 TMV resistance protein N N/A no 0.958 0.141 0.321 5e-12
Q9SZ67 1895 Probable WRKY transcripti no no 0.650 0.058 0.359 2e-09
Q9RBS2 1024 Protein PopC OS=Ralstonia no no 0.946 0.156 0.304 1e-06
Q9FKN7 1613 Protein DA1-related 4 OS= no no 0.609 0.063 0.293 4e-05
Q8VDB8 371 Leucine-rich repeat-conta yes no 0.562 0.256 0.323 0.0002
Q9FKZ1809 Probable disease resistan no no 0.822 0.171 0.268 0.0002
Q6UWE0 723 E3 ubiquitin-protein liga yes no 0.408 0.095 0.408 0.0005
>sp|O23530|SNC1_ARATH Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3 Back     alignment and function desciption
 Score = 71.6 bits (174), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/160 (37%), Positives = 83/160 (51%), Gaps = 13/160 (8%)

Query: 1   MKSLKTLVLSGCLKLKKFP----DIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLE 56
           + SL+TL LSGC  L+ FP    +IV +  + T I E+   I  L RLV L +  C  LE
Sbjct: 842 LSSLETLDLSGCSSLRSFPLISTNIVWLYLENTAIEEIPSTIGNLHRLVRLEMKKCTGLE 901

Query: 57  RLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNV 116
            L   ++ L  L TL LSG    R FP  + S   L   +LE TAI  +P   +L     
Sbjct: 902 VLPTDVN-LSSLETLDLSGCSSLRSFPLISESIKWL---YLENTAIEEIP---DLSKATN 954

Query: 117 LLNLK--DCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVP 154
           L NLK  +CK+L +LP+T   L+ L    +  C+ L+ +P
Sbjct: 955 LKNLKLNNCKSLVTLPTTIGNLQKLVSFEMKECTGLEVLP 994
Disease resistance protein of the TIR-NB-LRR-type. Part of the RPP5 locus that contains a cluster of several paralogous disease resistance (R) genes. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via an indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth. Regulated by RNA silencing. Expression regulated by MOS1 at chromatin level. Negatively regulated at the transcript level by BON1.
Arabidopsis thaliana (taxid: 3702)
>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1 Back     alignment and function description
>sp|Q9SZ67|WRK19_ARATH Probable WRKY transcription factor 19 OS=Arabidopsis thaliana GN=WRKY19 PE=2 SV=1 Back     alignment and function description
>sp|Q9RBS2|POPC_RALSO Protein PopC OS=Ralstonia solanacearum (strain GMI1000) GN=popC PE=4 SV=2 Back     alignment and function description
>sp|Q9FKN7|DAR4_ARATH Protein DA1-related 4 OS=Arabidopsis thaliana GN=DAR4 PE=1 SV=2 Back     alignment and function description
>sp|Q8VDB8|LRRC2_MOUSE Leucine-rich repeat-containing protein 2 OS=Mus musculus GN=Lrrc2 PE=2 SV=1 Back     alignment and function description
>sp|Q9FKZ1|DRL42_ARATH Probable disease resistance protein At5g66900 OS=Arabidopsis thaliana GN=At5g66900 PE=3 SV=1 Back     alignment and function description
>sp|Q6UWE0|LRSM1_HUMAN E3 ubiquitin-protein ligase LRSAM1 OS=Homo sapiens GN=LRSAM1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
147802475 1244 hypothetical protein VITISV_027841 [Viti 0.964 0.131 0.464 8e-26
359493269 1299 PREDICTED: TMV resistance protein N-like 0.964 0.125 0.464 1e-25
451798990 1335 TMV resistance protein N-like protein 7 0.964 0.122 0.452 2e-25
147828597 1500 hypothetical protein VITISV_003859 [Viti 0.964 0.108 0.470 6e-25
147862986 1617 hypothetical protein VITISV_027418 [Viti 0.946 0.098 0.467 9e-25
359493267 1417 PREDICTED: TMV resistance protein N-like 0.964 0.115 0.464 2e-24
147821215 1441 hypothetical protein VITISV_004613 [Viti 0.964 0.113 0.464 2e-24
147771827 587 hypothetical protein VITISV_028498 [Viti 0.964 0.277 0.464 3e-24
147787197 754 hypothetical protein VITISV_042806 [Viti 0.964 0.216 0.464 4e-24
359487015 1610 PREDICTED: TMV resistance protein N-like 0.964 0.101 0.464 5e-24
>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  121 bits (304), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 79/170 (46%), Positives = 104/170 (61%), Gaps = 7/170 (4%)

Query: 1   MKSLKTLVLSGCLKLKKFPDI---VQVLG----DRTDIRELSFAIELLFRLVLLTLNGCK 53
           ++ LK L LSGC  LK FP+I   +Q L     D T I EL F+I  L  L+LL L  CK
Sbjct: 599 LECLKYLSLSGCSDLKNFPEIQGNMQHLSELYLDGTAISELPFSIGYLTGLILLDLENCK 658

Query: 54  NLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLS 113
            L+ L  +I  LK L TL LS   K   FPE   + + L ++ L+GTA++ L  SIE L+
Sbjct: 659 RLKSLPSSICKLKSLETLILSACSKLESFPEIMENMEHLKKLLLDGTALKQLHPSIEHLN 718

Query: 114 GNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESL 163
           G V LNL+DCKNL +LP +   L+SL  L +SGCSKL+ +PE LG ++ L
Sbjct: 719 GLVSLNLRDCKNLATLPCSIGNLKSLETLIVSGCSKLQQLPENLGSLQCL 768

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359493269|ref|XP_003634556.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|451798990|gb|AGF69193.1| TMV resistance protein N-like protein 7 [Vitis labrusca] Back     alignment and taxonomy information
>gi|147828597|emb|CAN68630.1| hypothetical protein VITISV_003859 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147862986|emb|CAN78790.1| hypothetical protein VITISV_027418 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359493267|ref|XP_002271591.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|147821215|emb|CAN66453.1| hypothetical protein VITISV_004613 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147771827|emb|CAN62507.1| hypothetical protein VITISV_028498 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787197|emb|CAN64645.1| hypothetical protein VITISV_042806 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359487015|ref|XP_003633506.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query169
TAIR|locus:2170333 1197 CSA1 "constitutive shade-avoid 0.934 0.131 0.4 1.2e-18
TAIR|locus:2153328 1231 AT5G45230 [Arabidopsis thalian 0.911 0.125 0.4 3.2e-18
TAIR|locus:2122965 1210 AT4G19510 [Arabidopsis thalian 0.775 0.108 0.414 6e-17
TAIR|locus:2118106 1219 AT4G12010 [Arabidopsis thalian 0.917 0.127 0.381 1.3e-16
TAIR|locus:2153363 1261 AT5G45200 [Arabidopsis thalian 0.934 0.125 0.375 2.2e-16
TAIR|locus:2827639 1195 AT2G17060 [Arabidopsis thalian 0.786 0.111 0.405 6.9e-16
TAIR|locus:2153207 1165 AT5G45060 [Arabidopsis thalian 0.674 0.097 0.438 2.3e-15
TAIR|locus:2175991 1294 AT5G17680 [Arabidopsis thalian 0.946 0.123 0.345 5.4e-15
TAIR|locus:2827629 1355 AT2G17050 [Arabidopsis thalian 0.893 0.111 0.347 7.4e-15
TAIR|locus:2158475 1217 RPS4 "RESISTANT TO P. SYRINGAE 0.863 0.119 0.366 1e-14
TAIR|locus:2170333 CSA1 "constitutive shade-avoidance1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 238 (88.8 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 66/165 (40%), Positives = 93/165 (56%)

Query:     3 SLKTLVLSGCLKLKKFPDIVQVLGDRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTI 62
             S K   L+G  K +   ++   L   T ++E+   +E +  LV L L GC +L+ L   I
Sbjct:   670 SKKLNTLAGLGKAQNLQELN--LEGCTALKEMHVDMENMKFLVFLNLRGCTSLKSLPE-I 726

Query:    63 SVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKD 122
              ++  L TL LSG  KF+ F  +  S D+L  ++L+GTAI+ LP  I  L   V+LN+K 
Sbjct:   727 QLIS-LKTLILSGCSKFKTF--QVIS-DKLEALYLDGTAIKELPCDIGRLQRLVMLNMKG 782

Query:   123 CKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEVRL 167
             CK LK LP +   L++L  L LSGCSKL   PET G +  LE+ L
Sbjct:   783 CKKLKRLPDSLGQLKALEELILSGCSKLNEFPETWGNMSRLEILL 827
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0006952 "defense response" evidence=IEA;ISS
GO:0007165 "signal transduction" evidence=IEA
GO:0043531 "ADP binding" evidence=IEA
GO:0009416 "response to light stimulus" evidence=IMP
GO:0010114 "response to red light" evidence=IMP
GO:0042742 "defense response to bacterium" evidence=IMP
TAIR|locus:2153328 AT5G45230 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827639 AT2G17060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2153207 AT5G45060 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158475 RPS4 "RESISTANT TO P. SYRINGAE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00038357001
SubName- Full=Chromosome undetermined scaffold_92, whole genome shotgun sequence; (1097 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
PLN03210 1153 PLN03210, PLN03210, Resistant to P 9e-11
PLN03210 1153 PLN03210, PLN03210, Resistant to P 1e-09
PLN03210 1153 PLN03210, PLN03210, Resistant to P 3e-08
PLN03210 1153 PLN03210, PLN03210, Resistant to P 5e-07
PLN03210 1153 PLN03210, PLN03210, Resistant to P 0.002
PLN03150 623 PLN03150, PLN03150, hypothetical protein; Provisio 0.003
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information 
 Score = 59.1 bits (143), Expect = 9e-11
 Identities = 55/175 (31%), Positives = 80/175 (45%), Gaps = 34/175 (19%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLG----DRTDIREL--SFAIELLFRLVLLTLNGCKN 54
           +KSL  L LSGC +LK FPDI   +     D T I E   +  +E L  L+L  +   K 
Sbjct: 703 LKSLYRLNLSGCSRLKSFPDISTNISWLDLDETAIEEFPSNLRLENLDELILCEMKSEKL 762

Query: 55  LERLERTISVLKYLS----TLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIE 110
            ER++    ++  LS     L LS +    E                       LP+SI+
Sbjct: 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVE-----------------------LPSSIQ 799

Query: 111 LLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLEV 165
            L     L +++C NL++LP+  N L SL  L LSGCS+L+  P+    +  L +
Sbjct: 800 NLHKLEHLEIENCINLETLPTGIN-LESLESLDLSGCSRLRTFPDISTNISDLNL 853

syringae 6; Provisional. Length = 1153
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P Back     alignment and domain information
>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 169
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.76
PLN00113 968 leucine-rich repeat receptor-like protein kinase; 99.76
KOG0617264 consensus Ras suppressor protein (contains leucine 99.69
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.67
PLN03210 1153 Resistant to P. syringae 6; Provisional 99.62
KOG0617264 consensus Ras suppressor protein (contains leucine 99.6
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.56
KOG0444 1255 consensus Cytoskeletal regulator Flightless-I (con 99.5
KOG0472 565 consensus Leucine-rich repeat protein [Function un 99.46
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.44
KOG4194 873 consensus Membrane glycoprotein LIG-1 [Signal tran 99.39
KOG0472565 consensus Leucine-rich repeat protein [Function un 99.33
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.28
KOG0618 1081 consensus Serine/threonine phosphatase 2C containi 99.19
KOG4237 498 consensus Extracellular matrix protein slit, conta 99.19
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 99.17
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.15
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.11
PRK15387 788 E3 ubiquitin-protein ligase SspH2; Provisional 99.11
PRK15370 754 E3 ubiquitin-protein ligase SlrP; Provisional 99.11
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 99.08
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 99.06
PF14580175 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ 99.02
PLN03150623 hypothetical protein; Provisional 99.02
cd00116319 LRR_RI Leucine-rich repeats (LRRs), ribonuclease i 98.99
PLN03150 623 hypothetical protein; Provisional 98.9
KOG0532 722 consensus Leucine-rich repeat (LRR) protein, conta 98.87
COG4886 394 Leucine-rich repeat (LRR) protein [Function unknow 98.86
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.85
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 98.79
COG4886394 Leucine-rich repeat (LRR) protein [Function unknow 98.75
KOG4237 498 consensus Extracellular matrix protein slit, conta 98.75
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.75
PF1385561 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF 98.74
KOG1259490 consensus Nischarin, modulator of integrin alpha5 98.65
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 98.61
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 98.53
KOG4658 889 consensus Apoptotic ATPase [Signal transduction me 98.52
PRK15386 426 type III secretion protein GogB; Provisional 98.45
KOG3207 505 consensus Beta-tubulin folding cofactor E [Posttra 98.45
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 98.33
PF1279944 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ 98.29
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 98.28
KOG1909382 consensus Ran GTPase-activating protein [RNA proce 98.22
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 98.0
KOG4579177 consensus Leucine-rich repeat (LRR) protein associ 97.98
KOG1909 382 consensus Ran GTPase-activating protein [RNA proce 97.96
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 97.92
KOG2120419 consensus SCF ubiquitin ligase, Skp2 component [Po 97.92
KOG3665 699 consensus ZYG-1-like serine/threonine protein kina 97.84
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 97.67
KOG1859 1096 consensus Leucine-rich repeat proteins [General fu 97.59
KOG0531 414 consensus Protein phosphatase 1, regulatory subuni 97.5
PRK15386 426 type III secretion protein GogB; Provisional 97.48
KOG2982 418 consensus Uncharacterized conserved protein [Funct 97.4
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 97.35
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 97.25
KOG4341483 consensus F-box protein containing LRR [General fu 97.19
KOG1644233 consensus U2-associated snRNP A' protein [RNA proc 97.09
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 96.91
PF13306129 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ 96.9
KOG2739260 consensus Leucine-rich acidic nuclear protein [Cel 96.74
COG5238 388 RNA1 Ran GTPase-activating protein (RanGAP) involv 96.64
PF0056022 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le 96.6
COG5238 388 RNA1 Ran GTPase-activating protein (RanGAP) involv 96.44
PF1350417 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO 96.37
KOG2123 388 consensus Uncharacterized conserved protein [Funct 95.76
KOG1947 482 consensus Leucine rich repeat proteins, some prote 95.72
smart0036926 LRR_TYP Leucine-rich repeats, typical (most popula 95.63
smart0037026 LRR Leucine-rich repeats, outliers. 95.63
KOG3864221 consensus Uncharacterized conserved protein [Funct 95.58
KOG4341483 consensus F-box protein containing LRR [General fu 95.5
KOG2982 418 consensus Uncharacterized conserved protein [Funct 94.95
KOG2123 388 consensus Uncharacterized conserved protein [Funct 94.92
KOG1947 482 consensus Leucine rich repeat proteins, some prote 94.72
KOG3864221 consensus Uncharacterized conserved protein [Funct 93.74
KOG2739 260 consensus Leucine-rich acidic nuclear protein [Cel 93.49
KOG0473 326 consensus Leucine-rich repeat protein [Function un 93.24
smart0036726 LRR_CC Leucine-rich repeat - CC (cysteine-containi 92.81
KOG0473 326 consensus Leucine-rich repeat protein [Function un 91.65
smart0036426 LRR_BAC Leucine-rich repeats, bacterial type. 91.32
PF1351624 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI 88.64
smart0036526 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily 86.85
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information 
Probab=99.76  E-value=2.3e-18  Score=141.17  Aligned_cols=131  Identities=24%  Similarity=0.249  Sum_probs=63.8

Q ss_pred             cchhhhcccccceeeecCccccccchhhccCCCCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCC-cccccccC
Q 030897           34 LSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRG-LPASIELL  112 (169)
Q Consensus        34 lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-~~~~~~~l  112 (169)
                      +|..+.++++|++|++++|.....+|..+..+++|+.|++++|.....+|..++.+++|++|++++|++.. +|..++++
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l  259 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNL  259 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCC
Confidence            44445555555555555544444444444445555555555544333444445555555555555554443 44445555


Q ss_pred             CCCCeEecCCCcccccCcccccCCCCCceEeccCCcCCcccCcccCCccchh
Q 030897          113 SGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE  164 (169)
Q Consensus       113 ~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~  164 (169)
                      ++|+.|++++|.....+|..+.++++|++|++++|.....+|..+..+++|+
T Consensus       260 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  311 (968)
T PLN00113        260 KNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLE  311 (968)
T ss_pred             CCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCc
Confidence            5555555554433334444444455555555555444444444444444443

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>PLN03210 Resistant to P Back     alignment and domain information
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] Back     alignment and domain information
>KOG0472 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional Back     alignment and domain information
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily Back     alignment and domain information
>PLN03150 hypothetical protein; Provisional Back     alignment and domain information
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown] Back     alignment and domain information
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A Back     alignment and domain information
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] Back     alignment and domain information
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] Back     alignment and domain information
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] Back     alignment and domain information
>PRK15386 type III secretion protein GogB; Provisional Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] Back     alignment and domain information
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] Back     alignment and domain information
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily Back     alignment and domain information
>smart00370 LRR Leucine-rich repeats, outliers Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG4341 consensus F-box protein containing LRR [General function prediction only] Back     alignment and domain information
>KOG2982 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2123 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] Back     alignment and domain information
>KOG3864 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] Back     alignment and domain information
>KOG0473 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily Back     alignment and domain information
>KOG0473 consensus Leucine-rich repeat protein [Function unknown] Back     alignment and domain information
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type Back     alignment and domain information
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A Back     alignment and domain information
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
4fcg_A328 Structure Of The Leucine-Rich Repeat Domain Of The 3e-05
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii Effector Xcv3220 (Xopl) Length = 328 Back     alignment and structure 
Iteration: 1

 Score = 44.3 bits (103), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 49/163 (30%), Positives = 67/163 (41%), Gaps = 20/163 (12%)
Query: 13  LKLKKFPDIVQVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKN-LERLERTISV 64
           + L +FPD    L        D   + EL    +    L  LTL   +N L  L  +I+ 
Sbjct: 91  VPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTL--ARNPLRALPASIAS 148
Query: 65  LKYLSTLKLSGLLKFREFPEKTSSKD---------QLLEIHLEGTAIRGLPASIELLSGN 115
           L  L  L +    +  E PE  +S D          L  + LE T IR LPASI  L   
Sbjct: 149 LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNL 208
Query: 116 VLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLG 158
             L +++   L +L    + L  L  L L GC+ L+N P   G
Sbjct: 209 KSLKIRNSP-LSALGPAIHHLPKLEELDLRGCTALRNYPPIFG 250

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query169
4fcg_A 328 Uncharacterized protein; structural genomics, PSI- 9e-15
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 5e-14
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 7e-14
4fcg_A 328 Uncharacterized protein; structural genomics, PSI- 1e-08
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 1e-06
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 4e-06
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 5e-04
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 9e-06
3jqh_A167 C-type lectin domain family 4 member M; DC-signr, 2e-05
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
 Score = 69.2 bits (170), Expect = 9e-15
 Identities = 29/169 (17%), Positives = 62/169 (36%), Gaps = 7/169 (4%)

Query: 1   MKSLKTLVLSGCLKLKKFPDIVQVLGDRTDI---RELSFAIELLFRLVLLTLNGCKNLER 57
               + L   G   L+ + D++       +    R  S   +       +     + L+ 
Sbjct: 11  SSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKA 70

Query: 58  LERTISVLKY--LSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGN 115
               +          L+L  +    +FP++      L  + ++   +  LP +++  +G 
Sbjct: 71  TADLLEDATQPGRVALELRSV-PLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGL 129

Query: 116 VLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKLKNVPETLGKVESLE 164
             L L     L++LP++   L  LR L +  C +L  +PE L   ++  
Sbjct: 130 ETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.9
4fcg_A328 Uncharacterized protein; structural genomics, PSI- 99.89
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 99.82
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.8
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.8
3rgz_A768 Protein brassinosteroid insensitive 1; phytohormon 99.8
1ogq_A313 PGIP-2, polygalacturonase inhibiting protein; inhi 99.8
1ozn_A285 Reticulon 4 receptor; NOGO receptor, MAD, myelinat 99.78
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.78
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.78
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.77
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.77
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 99.77
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.77
2z66_A306 Variable lymphocyte receptor B, TOLL-like recepto; 99.76
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 99.76
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.76
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 99.75
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.75
3zyj_A 440 Leucine-rich repeat-containing protein 4C; cell ad 99.75
3zyi_A 452 Leucine-rich repeat-containing protein 4; cell adh 99.74
3vq2_A606 TLR4, TOLL-like receptor 4; leucine rich repeat MD 99.74
1p9a_G290 Platelet glycoprotein IB alpha chain precursor; pl 99.73
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.73
2o6q_A270 Variable lymphocyte receptor A; leucine-rich repea 99.73
4eco_A 636 Uncharacterized protein; leucine-rich repeats, pro 99.73
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.73
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 99.73
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.72
2z80_A 353 TOLL-like receptor 2, variable lymphocyte recepto; 99.72
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.72
3rfs_A272 Internalin B, repeat modules, variable lymphocyte 99.72
2z63_A570 TOLL-like receptor 4, variable lymphocyte recepto; 99.72
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.72
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.71
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.71
4g8a_A 635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.71
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.71
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.71
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.7
3m19_A251 Variable lymphocyte receptor A diversity region; a 99.7
3t6q_A 606 CD180 antigen; protein-protein complex, leucine ri 99.7
2z81_A 549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.7
1xku_A330 Decorin; proteoglycan, leucine-rich repeat, struct 99.7
4ecn_A 876 Leucine-rich repeat protein; leucine-rich repeats, 99.7
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.7
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.7
2id5_A 477 Lingo-1, leucine rich repeat neuronal 6A; CNS-spec 99.69
2z80_A353 TOLL-like receptor 2, variable lymphocyte recepto; 99.69
3e6j_A229 Variable lymphocyte receptor diversity region; var 99.69
1h6u_A308 Internalin H; cell adhesion, leucine rich repeat, 99.69
3t6q_A606 CD180 antigen; protein-protein complex, leucine ri 99.69
4ay9_X 350 Follicle-stimulating hormone receptor; hormone-rec 99.69
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.69
2v9t_B220 SLIT homolog 2 protein N-product; structural prote 99.69
3o6n_A 390 APL1; leucine-rich repeat, protein binding; HET: N 99.69
1h6u_A 308 Internalin H; cell adhesion, leucine rich repeat, 99.69
3v47_A455 TOLL-like receptor 5B and variable lymphocyte REC 99.69
1wwl_A312 Monocyte differentiation antigen CD14; LPS, immune 99.68
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.68
4ezg_A197 Putative uncharacterized protein; internalin-A, le 99.68
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.68
2xwt_C239 Thyrotropin receptor; signaling protein-immune sys 99.68
2z63_A 570 TOLL-like receptor 4, variable lymphocyte recepto; 99.67
2z62_A276 TOLL-like receptor 4, variable lymphocyte recepto; 99.67
3o53_A317 Protein LRIM1, AGAP006348-PA; leucine-rich repeat, 99.66
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.66
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.66
3o6n_A 390 APL1; leucine-rich repeat, protein binding; HET: N 99.66
4fmz_A347 Internalin; leucine rich repeat, structural genomi 99.66
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.66
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.65
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 99.65
3oja_A 487 Leucine-rich immune molecule 1; coiled-coil, helix 99.65
2v70_A220 SLIT-2, SLIT homolog 2 protein N-product; neurogen 99.65
2ft3_A332 Biglycan; proteoglycan, dimer interface, structura 99.65
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.64
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.64
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 99.64
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.64
2z81_A549 CD282 antigen, TOLL-like receptor 2, variable lymp 99.64
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.63
3oja_B 597 Anopheles plasmodium-responsive leucine-rich REPE 99.63
1ziw_A 680 TOLL-like receptor 3; innate immunity, immune syst 99.63
1ziw_A680 TOLL-like receptor 3; innate immunity, immune syst 99.62
2o6s_A208 Variable lymphocyte receptor B; leucine-rich repea 99.62
4fmz_A 347 Internalin; leucine rich repeat, structural genomi 99.61
2je0_A149 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.61
2ell_A168 Acidic leucine-rich nuclear phosphoprotein 32 FAM 99.61
1h6t_A291 Internalin B; cell adhesion, leucine rich repeat, 99.61
2z7x_B520 TOLL-like receptor 1, variable lymphocyte recepto; 99.61
1w8a_A192 SLIT protein; signaling protein, secreted protein, 99.6
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.6
3j0a_A 844 TOLL-like receptor 5; membrane protein, leucine-ri 99.6
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.6
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 99.59
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.59
4g8a_A635 TOLL-like receptor 4; leucine rich repeat MD-2 rel 99.59
2ast_B336 S-phase kinase-associated protein 2; SCF-substrate 99.59
4glp_A310 Monocyte differentiation antigen CD14; alpha beta 99.58
1m9s_A 605 Internalin B; cell invasion, GW domains, SH3 domai 99.57
1o6v_A466 Internalin A; bacterial infection, extracellular r 99.57
4b8c_D 727 Glucose-repressible alcohol dehydrogenase transcr 99.57
3bz5_A 457 Internalin-J, INLJ; leucine rich repeat (LRR), cys 99.56
1o6v_A 466 Internalin A; bacterial infection, extracellular r 99.56
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.56
3a79_B562 TLR6, VLRB.59, TOLL-like receptor 6, variable lymp 99.56
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 99.56
3cvr_A 571 Invasion plasmid antigen; leucine rich repeat and 99.56
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 99.55
1a9n_A176 U2A', U2A'; complex (nuclear protein/RNA), RNA, sn 99.54
2xot_A 361 Amphoterin-induced protein 1; cell adhesion, neuro 99.54
1w8a_A192 SLIT protein; signaling protein, secreted protein, 99.53
1dce_A567 Protein (RAB geranylgeranyltransferase alpha subun 99.52
1xeu_A263 Internalin C; cellular invasion, leucine-rich repe 99.52
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 99.51
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 99.5
2wfh_A193 SLIT homolog 2 protein C-product; developmental pr 99.5
1jl5_A 454 Outer protein YOPM; leucine-rich repeat, molecular 99.48
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.48
2ca6_A 386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.47
4ay9_X350 Follicle-stimulating hormone receptor; hormone-rec 99.47
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 99.46
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 99.43
2o6r_A177 Variable lymphocyte receptor B; leucine-rich repea 99.42
3g06_A 622 SSPH2 (leucine-rich repeat protein); E3 ubiquitin 99.39
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 99.38
1ds9_A198 Outer arm dynein; leucine-rich repeat, beta-BETA-a 99.33
3g39_A170 Variable lymphocyte receptor VLRB.2D; antibody, X- 99.32
2r9u_A174 Variable lymphocyte receptor; adaptive immunity, V 99.31
3goz_A 362 Leucine-rich repeat-containing protein; LEGL7, NES 99.31
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.27
3goz_A 362 Leucine-rich repeat-containing protein; LEGL7, NES 99.26
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.25
1z7x_W461 Ribonuclease inhibitor; leucine-rich repeat, enzym 99.23
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 99.18
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 99.15
2ifg_A 347 High affinity nerve growth factor receptor; TRK, T 99.14
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 99.11
2p1m_B 594 Transport inhibitor response 1 protein; F-BOX, leu 99.09
3ogk_B 592 Coronatine-insensitive protein 1; leucine rich rep 99.08
3sb4_A329 Hypothetical leucine rich repeat protein; LRR, rig 99.03
3un9_A 372 NLR family member X1; leucine rich repeat (LRR), a 98.93
3un9_A 372 NLR family member X1; leucine rich repeat (LRR), a 98.87
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.83
4fdw_A401 Leucine rich hypothetical protein; putative cell s 98.6
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 98.54
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.5
3e4g_A176 ATP synthase subunit S, mitochondrial; leucine-ric 98.48
2ra8_A362 Uncharacterized protein Q64V53_bacfr; WGR domain, 98.47
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.41
1io0_A185 Tropomodulin; LRR protein, right-handed super-heli 98.4
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 98.14
3rw6_A267 Nuclear RNA export factor 1; retroviral constituti 98.09
4gt6_A394 Cell surface protein; leucine rich repeats, putati 97.7
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.63
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 97.57
4gt6_A394 Cell surface protein; leucine rich repeats, putati 97.41
4fs7_A394 Uncharacterized protein; leucine-rich repeats, pro 97.4
4h09_A379 Hypothetical leucine rich repeat protein; two LRR_ 97.19
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 96.67
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 96.61
1pgv_A197 TMD-1, tropomodulin TMD-1; structural genomics, PS 96.46
3rfe_A130 Platelet glycoprotein IB beta chain; platelet surf 96.16
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
Probab=99.90  E-value=2.1e-23  Score=151.12  Aligned_cols=161  Identities=25%  Similarity=0.452  Sum_probs=83.9

Q ss_pred             CCCcEEeccCCcCCcccCchHHhhcc-------CCChhccchhhhcccccceeeecCccccccchhhccC---------C
Q 030897            2 KSLKTLVLSGCLKLKKFPDIVQVLGD-------RTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISV---------L   65 (169)
Q Consensus         2 ~~L~~l~ls~~~~l~~~p~~~~~~~~-------~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~---------~   65 (169)
                      ++|++|++++|. +..+|+.+..+..       .+.+..+|..+..+++|++|++++|+..+.+|..+..         +
T Consensus       104 ~~L~~L~L~~n~-l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l  182 (328)
T 4fcg_A          104 SHLQHMTIDAAG-LMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGL  182 (328)
T ss_dssp             TTCSEEEEESSC-CCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEES
T ss_pred             CCCCEEECCCCC-ccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccC
Confidence            456666666665 4466655444211       2334456666666666666666666555555543322         5


Q ss_pred             CCCCEEeeCCcccccccccccCCCCCCcEEEecCcccCCcccccccCCCCCeEecCCCcccccCcccccCCCCCceEecc
Q 030897           66 KYLSTLKLSGLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLS  145 (169)
Q Consensus        66 ~~l~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~~~~l~~L~~l~l~~~~~l~~~~~~~~~l~~L~~L~l~  145 (169)
                      ++|++|++++| .+..+|..++.+++|++|++++|++..+|..++.+++|+.|++++|+..+.+|..+..+++|+.|+++
T Consensus       183 ~~L~~L~L~~n-~l~~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~  261 (328)
T 4fcg_A          183 VNLQSLRLEWT-GIRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILK  261 (328)
T ss_dssp             TTCCEEEEEEE-CCCCCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECT
T ss_pred             CCCCEEECcCC-CcCcchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECC
Confidence            55555555553 23344555555555555555555555555555555555555555544444444444444444444444


Q ss_pred             CCcCCcccCcccCCccchh
Q 030897          146 GCSKLKNVPETLGKVESLE  164 (169)
Q Consensus       146 ~~~~~~~~p~~~~~l~~L~  164 (169)
                      +|+....+|.+++.+++|+
T Consensus       262 ~n~~~~~~p~~~~~l~~L~  280 (328)
T 4fcg_A          262 DCSNLLTLPLDIHRLTQLE  280 (328)
T ss_dssp             TCTTCCBCCTTGGGCTTCC
T ss_pred             CCCchhhcchhhhcCCCCC
Confidence            4444444444444444443
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Back     alignment and structure
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Back     alignment and structure
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Back     alignment and structure
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Back     alignment and structure
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Back     alignment and structure
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Back     alignment and structure
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Back     alignment and structure
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Back     alignment and structure
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Back     alignment and structure
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Back     alignment and structure
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Back     alignment and structure
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Back     alignment and structure
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Back     alignment and structure
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Back     alignment and structure
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Back     alignment and structure
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Back     alignment and structure
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Back     alignment and structure
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Back     alignment and structure
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Back     alignment and structure
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Back     alignment and structure
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Back     alignment and structure
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* Back     alignment and structure
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Back     alignment and structure
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} Back     alignment and structure
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Back     alignment and structure
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Back     alignment and structure
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Back     alignment and structure
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Back     alignment and structure
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Back     alignment and structure
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Back     alignment and structure
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Back     alignment and structure
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Back     alignment and structure
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Back     alignment and structure
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Back     alignment and structure
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Back     alignment and structure
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Back     alignment and structure
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} Back     alignment and structure
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} Back     alignment and structure
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 Back     alignment and structure
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 169
d1jl5a_353 c.10.2.6 (A:) Leucine rich effector protein YopM { 6e-05
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 6e-05
 Identities = 17/75 (22%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 91  QLLEIHLEGTAIRGLPASIELLSGNVLLNLKDCKNLKSLPSTTNGLRSLRMLHLSGCSKL 150
            L E+++    +  LPA    L     L      +L  +P      ++L+ LH+     L
Sbjct: 285 SLEELNVSNNKLIELPALPPRLE---RLIASFN-HLAEVPEL---PQNLKQLHVEYN-PL 336

Query: 151 KNVPETLGKVESLEV 165
           +  P+    VE L +
Sbjct: 337 REFPDIPESVEDLRM 351

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query169
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.74
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.73
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.67
d1p9ag_266 von Willebrand factor binding domain of glycoprote 99.66
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.66
d1ozna_284 Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma 99.64
d1ogqa_313 Polygalacturonase inhibiting protein PGIP {Kidney 99.63
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.61
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.57
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 99.56
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.55
d1a9na_162 Splicesomal U2A' protein {Human (Homo sapiens) [Ta 99.54
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.54
d1dcea3124 Rab geranylgeranyltransferase alpha-subunit, C-ter 99.52
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.52
d1xkua_305 Decorin {Cow (Bos taurus) [TaxId: 9913]} 99.51
d2omxa2199 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.5
d1w8aa_192 Slit {Fruit fly (Drosophila melanogaster) [TaxId: 99.5
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.47
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.47
d1h6ta2210 Internalin B {Listeria monocytogenes [TaxId: 1639] 99.46
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 99.42
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.41
d2astb2284 Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa 99.35
d2omza2384 Internalin A {Listeria monocytogenes [TaxId: 1639] 99.35
d1h6ua2227 Internalin H {Listeria monocytogenes [TaxId: 1639] 99.33
d2ifga3156 High affinity nerve growth factor receptor, N-term 99.32
d1xwdc1242 Follicle-stimulating hormone receptor {Human (Homo 99.3
d1m9la_198 Outer arm dynein light chain 1 {Green algae (Chlam 99.29
d2ifga3156 High affinity nerve growth factor receptor, N-term 99.22
d1jl5a_353 Leucine rich effector protein YopM {Yersinia pesti 98.9
d1jl5a_ 353 Leucine rich effector protein YopM {Yersinia pesti 98.74
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 98.42
d2ca6a1344 Rna1p (RanGAP1), N-terminal domain {Fission yeast 98.29
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 98.19
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.16
d1koha1162 mRNA export factor tap {Human (Homo sapiens) [TaxI 98.16
d1z7xw1 460 Ribonuclease inhibitor {Human (Homo sapiens) [TaxI 98.14
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 97.94
d1pgva_167 Tropomodulin C-terminal domain {nematode (Caenorha 97.83
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 97.42
d1io0a_166 Tropomodulin C-terminal domain {Chicken (Gallus ga 97.12
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=2.3e-17  Score=114.44  Aligned_cols=159  Identities=25%  Similarity=0.218  Sum_probs=95.6

Q ss_pred             CCcEEeccCCcCCcccCchH-Hhhc-------cCCChhccchhhhcccccceeeecCccccccchhhccCCCCCCEEeeC
Q 030897            3 SLKTLVLSGCLKLKKFPDIV-QVLG-------DRTDIRELSFAIELLFRLVLLTLNGCKNLERLERTISVLKYLSTLKLS   74 (169)
Q Consensus         3 ~L~~l~ls~~~~l~~~p~~~-~~~~-------~~~~l~~lp~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~l~~l~l~   74 (169)
                      ++++|+|++|. ++.+|... ..+.       ..+.++.+|. +..+++|++|++++| .+...+..+..+++|+.++++
T Consensus        32 ~l~~L~Ls~N~-i~~l~~~~f~~l~~L~~L~L~~N~l~~l~~-~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~L~~L~l~  108 (266)
T d1p9ag_          32 DTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHN-QLQSLPLLGQTLPALTVLDVS  108 (266)
T ss_dssp             TCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSS-CCSSCCCCTTTCTTCCEEECC
T ss_pred             CCCEEECcCCc-CCCcCHHHhhcccccccccccccccccccc-ccccccccccccccc-ccccccccccccccccccccc
Confidence            46666666655 44444322 2211       1223344442 345566666666663 344444445556666666666


Q ss_pred             CcccccccccccCCCCCCcEEEecCcccCCcccc-cccCCCCCeEecCCCcccccCc-ccccCCCCCceEeccCCcCCcc
Q 030897           75 GLLKFREFPEKTSSKDQLLEIHLEGTAIRGLPAS-IELLSGNVLLNLKDCKNLKSLP-STTNGLRSLRMLHLSGCSKLKN  152 (169)
Q Consensus        75 ~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~~~~~-~~~l~~L~~l~l~~~~~l~~~~-~~~~~l~~L~~L~l~~~~~~~~  152 (169)
                      ++......+..+..+.+++++++++|.+..++.. +..+++++.+++++| .++.++ ..+..+++|++|++++| .++.
T Consensus       109 ~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N-~l~~~~~~~~~~l~~L~~L~Ls~N-~L~~  186 (266)
T d1p9ag_         109 FNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQEN-SLYT  186 (266)
T ss_dssp             SSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSS-CCCC
T ss_pred             ccccceeeccccccccccccccccccccceeccccccccccchhcccccc-cccccCccccccccccceeecccC-CCcc
Confidence            6443332334555666677777777777766543 456788888888874 555554 56788888999999885 4668


Q ss_pred             cCcccCCccchhhh
Q 030897          153 VPETLGKVESLEVR  166 (169)
Q Consensus       153 ~p~~~~~l~~L~~l  166 (169)
                      +|+++..+++|+.|
T Consensus       187 lp~~~~~~~~L~~L  200 (266)
T d1p9ag_         187 IPKGFFGSHLLPFA  200 (266)
T ss_dssp             CCTTTTTTCCCSEE
T ss_pred             cChhHCCCCCCCEE
Confidence            88877777777654
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Back     information, alignment and structure
>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure
>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} Back     information, alignment and structure