Citrus Sinensis ID: 030967

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE
Secondary Structure (PSIPRED)
cccEEEEEccccEEEEccccccccccccccccEEEccccEEEEEcccEEEEEcccccEEEccccEEEEcccccccccEEEEEEcccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEccccEEEccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEccccccccccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEHEEEHccccEEEEEEHHHcHHccccccHHHHHHHHHHHHHccccccccHHHcccccccccccccccEEEEEEcccEEEEEEEccEEEEEEcccccccccc
Coil and Loop (DISEMBL)
MGRIFVVEldgrsyrcKFCRTHLALPEDLVSRAFhcrrgkaylfnsavnitvGASEERLMLSGMHTVADIFCcscgqivgwKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFffwlggwhpagsfIYTVTICVSIynrgrivdeidfstevyidtrpsvsdaee
Flexible Loop (DISEMBL)
mgrifvveldgrsyrCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKyesareksqkykeGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIvdeidfstevyidtrpsvsdaee
Low Complexity Region (SEG)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE
Disordered region (IsUnstruct)
***IFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYID**********
Disordered Region (DISOPRED)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLY************************************EIDFSTEVYID**********
Disordered Region (DISEMBL)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDT*********
Disordered Region (DISPRO)
*GRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTR********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q9FN32	129	Protein yippee-like At5g5	yes	no	0.761	0.992	0.636	2e-53
P59234	129	Protein yippee-like OS=So	N/A	no	0.613	0.798	0.669	7e-38
Q9SR97	128	Protein yippee-like At3g0	no	no	0.613	0.804	0.621	4e-37
Q9LY56	121	Protein yippee-like At3g5	no	no	0.613	0.851	0.592	9e-35
Q9C777	129	Protein yippee-like At3g1	no	no	0.613	0.798	0.621	4e-34
Q6NWI4	119	Protein yippee-like 3 OS=	yes	no	0.595	0.840	0.539	4e-26
Q65Z54	119	Protein yippee-like 3 OS=	N/A	no	0.595	0.840	0.529	9e-26
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.535	0.708	0.566	1e-25
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.535	0.708	0.566	1e-25
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.535	0.708	0.566	1e-25

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score =  208 bits (529), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 116/168 (69%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSGMHTVADIFCC CGQ VGWKYESA EK+QKYKEGKFVLE                   
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVDEID STEVYIDT  S SD E+
Sbjct: 102 ---------------------RGRIVDEIDLSTEVYIDTHGSTSDTED 128

Arabidopsis thaliana (taxid: 3702)

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  156 bits (394), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 69/103 (66%), Positives = 85/103 (82%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FV+ L+G+ Y CK C THLAL E++VS++FHC+ GKAYLF+  VN+T G  E R+M
Sbjct: 1   MGRLFVLTLEGKIYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
           ++GMHTVADIFC  CG IVGWKYE+A EKSQKYKEGK VLER+
Sbjct: 61  MTGMHTVADIFCVCCGSIVGWKYETAHEKSQKYKEGKSVLERF 103

Solanum tuberosum (taxid: 4113)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  153 bits (387), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 87/103 (84%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FV++L+G  Y CK+C+TH A+  D++S++FHC+ G+AYLF++ VN+TVG  E R+M
Sbjct: 1   MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
           ++G HTVADIFC SCG +VGWKYE A +KSQKYKEGKF+LER+
Sbjct: 61  ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERF 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  145 bits (367), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 61/103 (59%), Positives = 82/103 (79%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+F+V+L+G  Y CK C+THL+  +D++S++F C+ G+AYLFN+ VN++VG  E+R+M
Sbjct: 1   MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
           ++G+H V DIFC  CG  VGWKYE A EKSQKYKEGK VLE Y
Sbjct: 61  ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELY 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  143 bits (361), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 64/103 (62%), Positives = 82/103 (79%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+F+V L+G+SY CK C+T+LAL +D+VS++F  R GKAYLF+  VN+  G  E+R+M
Sbjct: 1   MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
           ++GMHTV DI+C  CG  VGWKYE A EK+QKYKEGK VLERY
Sbjct: 61  MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERY 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NWI4|YPEL3_DANRE Protein yippee-like 3 OS=Danio rerio GN=ypel3 PE=3 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 55/102 (53%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 2   GRIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
            + F   LD   R Y C  CR HLA  +DL+S++F   +G+AYLFNS VN+  G +EERL
Sbjct: 7   AKTFQAYLDSCHRRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERL 66

Query: 60  MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
           +L+G+H VADI+C +C   +GWKYE A E SQKYKEGKF++E
Sbjct: 67  LLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKFIIE 108

May be involved in proliferation and apoptosis in myeloid precursor cells.

Danio rerio (taxid: 7955)

>sp|Q65Z54|YPEL3_ORYLA Protein yippee-like 3 OS=Oryzias latipes GN=ypel3 PE=3 SV=1

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 54/102 (52%), Positives = 72/102 (70%), Gaps = 2/102 (1%)

Query: 2   GRIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
            + F   LD   R Y C  CR HLA  +DL+S++F   +G+AYLFNS VN+  G +EERL
Sbjct: 7   AKTFQAYLDSCHRRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERL 66

Query: 60  MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
           +L+G+H VADI+C +C   +GWKYE A E SQKYKEGK+++E
Sbjct: 67  LLTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKYIIE 108

May be involved in proliferation and apoptosis in myeloid precursor cells.

Oryzias latipes (taxid: 8090)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query: 12  RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
           R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
           C SC   +GWKYE A E SQKYKEGK+++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query: 12  RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
           R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
           C SC   +GWKYE A E SQKYKEGK+++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score =  115 bits (289), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query: 12  RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
           R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct: 27  RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query: 72  CCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
           C SC   +GWKYE A E SQKYKEGK+++E
Sbjct: 87  CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
356549697	129	PREDICTED: protein yippee-like At5g53940	0.761	0.992	0.642	1e-53
297796245	129	yippee family protein [Arabidopsis lyrat	0.761	0.992	0.642	2e-52
15238881	129	yippee-like zinc-binding protein [Arabid	0.761	0.992	0.636	7e-52
351726992	129	uncharacterized protein LOC100306635 [Gl	0.761	0.992	0.613	1e-50
359493828	127	PREDICTED: protein yippee-like At5g53940	0.75	0.992	0.595	9e-49
449456629	129	PREDICTED: protein yippee-like At5g53940	0.761	0.992	0.601	1e-48
51970424	123	zinc-binding protein-like [Arabidopsis t	0.726	0.991	0.629	1e-48
224114878	122	predicted protein [Populus trichocarpa]	0.720	0.991	0.608	9e-47
351720851	129	uncharacterized protein LOC100305822 [Gl	0.755	0.984	0.580	5e-46
388495048	129	unknown [Lotus japonicus]	0.761	0.992	0.577	6e-46

>gi|356549697|ref|XP_003543228.1| PREDICTED: protein yippee-like At5g53940-like [Glycine max]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 119/168 (70%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIFVVEL+GRSYRCKFCRTHLAL +DL+SRAFHCRRGKAYLFN+AVN T+G  EER+M
Sbjct: 1   MGRIFVVELEGRSYRCKFCRTHLALADDLISRAFHCRRGKAYLFNNAVNFTIGTPEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSG+HTVADIFCC CGQI+GWKYESA EKSQKYKEGKFVLE                   
Sbjct: 61  LSGLHTVADIFCCCCGQIIGWKYESAHEKSQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVDE+DFSTE YID+  S+SDAEE
Sbjct: 102 ---------------------RGRIVDEVDFSTEFYIDSHASMSDAEE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796245|ref|XP_002866007.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297311842|gb|EFH42266.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 108/168 (64%), Positives = 117/168 (69%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSGMHTVADIFCCSCGQ VGWKYESA EK+QKYKEGKFVLE                   
Sbjct: 61  LSGMHTVADIFCCSCGQNVGWKYESAHEKAQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVDEID STEVYIDT  S SD E+
Sbjct: 102 ---------------------RGRIVDEIDLSTEVYIDTHGSTSDTED 128

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238881|ref|NP_200205.1| yippee-like zinc-binding protein [Arabidopsis thaliana] gi|27923898|sp|Q9FN32.1|YIPL7_ARATH RecName: Full=Protein yippee-like At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding protein-like [Arabidopsis thaliana] gi|21554253|gb|AAM63328.1| zinc-binding protein-like [Arabidopsis thaliana] gi|51971218|dbj|BAD44301.1| zinc-binding protein-like [Arabidopsis thaliana] gi|88011182|gb|ABD38914.1| At5g53940 [Arabidopsis thaliana] gi|332009048|gb|AED96431.1| yippee-like zinc-binding protein [Arabidopsis thaliana]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 107/168 (63%), Positives = 116/168 (69%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct: 1   MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSGMHTVADIFCC CGQ VGWKYESA EK+QKYKEGKFVLE                   
Sbjct: 61  LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVDEID STEVYIDT  S SD E+
Sbjct: 102 ---------------------RGRIVDEIDLSTEVYIDTHGSTSDTED 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726992|ref|NP_001237913.1| uncharacterized protein LOC100306635 [Glycine max] gi|255629139|gb|ACU14914.1| unknown [Glycine max]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 103/168 (61%), Positives = 114/168 (67%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSYRCKFCRTHLAL  DL+SRAFHC RGKAYLFN+ VN T+G  EER+M
Sbjct: 1   MGRIFAVELEGRSYRCKFCRTHLALANDLISRAFHCLRGKAYLFNNVVNFTIGTPEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSG+HTVADIFCC CG+I+GWKYESA EK QKYKEGKFVLE                   
Sbjct: 61  LSGLHTVADIFCCCCGEIIGWKYESAHEKCQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVDE+DFSTE YID+  S+SDAEE
Sbjct: 102 ---------------------RGRIVDEVDFSTEFYIDSHASMSDAEE 128

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493828|ref|XP_002282618.2| PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera] gi|302142969|emb|CBI20264.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 100/168 (59%), Positives = 116/168 (69%), Gaps = 42/168 (25%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FVVEL+ R+Y CKFC+THLAL +DLVSRAFHCRRGKAYLFN+AVNITVGA EER+M
Sbjct: 1   MGRVFVVELEARAYECKFCKTHLALADDLVSRAFHCRRGKAYLFNNAVNITVGAQEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           +SGMHTVADIFCC CGQIVGWKYE A +K+QKYKEGKFVLE                   
Sbjct: 61  ISGMHTVADIFCCCCGQIVGWKYEMAHDKTQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRI+D +D  +E YIDTR ++SDAE+
Sbjct: 102 ---------------------RGRIIDGVD--SEFYIDTRANMSDAED 126

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449456629|ref|XP_004146051.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 116/168 (69%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGR+FVVE +GRSYRCK+C T LAL +DL SRAFHCRRGKAYLFN+A+NI  GA EER+M
Sbjct: 1   MGRVFVVEREGRSYRCKYCNTQLALFDDLASRAFHCRRGKAYLFNNAINIYFGALEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSG+HTVADIFCCSCGQIVGWKYE+A EKSQKYKEGK+VLE                   
Sbjct: 61  LSGLHTVADIFCCSCGQIVGWKYEAAHEKSQKYKEGKYVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVD+I+FST  +ID+R SVSD+EE
Sbjct: 102 ---------------------RGRIVDDIEFSTGFFIDSRSSVSDSEE 128

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51970424|dbj|BAD43904.1| zinc-binding protein-like [Arabidopsis thaliana]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/162 (62%), Positives = 111/162 (68%), Gaps = 40/162 (24%)

Query: 7   VELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHT 66
           VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLMLSGMHT
Sbjct: 1   VELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLMLSGMHT 60

Query: 67  VADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWLGGWHPA 126
           VADIFCC CGQ VGWKYESA EK+QKYKEGKFVLE                         
Sbjct: 61  VADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLE------------------------- 95

Query: 127 GSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                          RGRIVDEID STEVYIDT  S SD E+
Sbjct: 96  ---------------RGRIVDEIDLSTEVYIDTHGSTSDTED 122

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114878|ref|XP_002316882.1| predicted protein [Populus trichocarpa] gi|222859947|gb|EEE97494.1| predicted protein [Populus trichocarpa]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 98/161 (60%), Positives = 109/161 (67%), Gaps = 40/161 (24%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIFVVEL+GRSYRCKFC THLALP+ LVS++F CRRGKAYLFN+ VNITVG  EER+M
Sbjct: 1   MGRIFVVELEGRSYRCKFCGTHLALPDQLVSKSFRCRRGKAYLFNNVVNITVGVLEERMM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSGMHTVADIFCC CG I+GWKYE+A E SQKYKEGKFVLE                   
Sbjct: 61  LSGMHTVADIFCCCCGGIIGWKYEAAHEMSQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRP 161
                                RGRIV E+DFSTE++IDT P
Sbjct: 102 ---------------------RGRIVGEMDFSTELFIDTHP 121

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720851|ref|NP_001237190.1| uncharacterized protein LOC100305822 [Glycine max] gi|255626701|gb|ACU13695.1| unknown [Glycine max]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 113/167 (67%), Gaps = 40/167 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSY CK C+THLAL +DL+SR+F+C+RGKAYLFN+ VN T+G  EERLM
Sbjct: 1   MGRIFTVELEGRSYSCKSCKTHLALADDLISRSFYCQRGKAYLFNNVVNFTIGELEERLM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSG+HTVADIFCC CGQIVGWKYESA E++QKYKEGKFVLE                   
Sbjct: 61  LSGLHTVADIFCCCCGQIVGWKYESAHERNQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAE 167
                                RGRIVDE+DFSTE  I++  S+SDAE
Sbjct: 102 ---------------------RGRIVDEMDFSTEFRIESCVSMSDAE 127

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495048|gb|AFK35590.1| unknown [Lotus japonicus]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 112/168 (66%), Gaps = 40/168 (23%)

Query: 1   MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
           MGRIF VEL+GRSY CK C+THLAL +DL+SR F+C+RGKAYLFN+ VN T+G  EER M
Sbjct: 1   MGRIFAVELEGRSYGCKSCKTHLALADDLISRGFYCQRGKAYLFNNVVNFTIGELEERAM 60

Query: 61  LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYMRYVSLLYIQIPFFFWL 120
           LSG+HTVADIFCC CGQI+GWKYESA EKSQKYKEGKFVLE                   
Sbjct: 61  LSGLHTVADIFCCCCGQIIGWKYESAHEKSQKYKEGKFVLE------------------- 101

Query: 121 GGWHPAGSFIYTVTICVSIYNRGRIVDEIDFSTEVYIDTRPSVSDAEE 168
                                RGRIVDEIDFSTE  +D+  S+SD+E+
Sbjct: 102 ---------------------RGRIVDEIDFSTEFRVDSCISMSDSED 128

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.607	0.790	0.852	4.2e-55
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.613	0.792	0.669	5.5e-38
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.613	0.804	0.621	1e-36
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.613	0.851	0.592	9.5e-34
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.613	0.635	0.621	1.5e-33
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.607	0.790	0.533	1.9e-26
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.589	0.831	0.544	5.2e-26
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.535	0.708	0.566	8.4e-26
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.535	0.708	0.566	8.4e-26
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.535	0.708	0.566	8.4e-26

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 480 (174.0 bits), Expect = 4.2e-55, Sum P(2) = 4.2e-55
 Identities = 87/102 (85%), Positives = 95/102 (93%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGRIF VEL+GRSYRC+FCRTHLALP+DLVSR+FHCRRGKAYLFN +VNI++G  EERLM
Sbjct:     1 MGRIFTVELEGRSYRCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERLM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
             LSGMHTVADIFCC CGQ VGWKYESA EK+QKYKEGKFVLER
Sbjct:    61 LSGMHTVADIFCCCCGQNVGWKYESAHEKAQKYKEGKFVLER 102

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 69/103 (66%), Positives = 87/103 (84%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+FVV L+G+ Y CK C+THLA  ED++S++FHC+ GKAYLFN   N+++G +EERLM
Sbjct:     1 MGRLFVVNLEGKIYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERLM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
             ++G HTVADIFC SCG IVGWKYE+A EK+QKYKEGK VLER+
Sbjct:    61 MTGKHTVADIFCVSCGSIVGWKYETAHEKNQKYKEGKSVLERF 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 395 (144.1 bits), Expect = 1.0e-36, P = 1.0e-36
 Identities = 64/103 (62%), Positives = 87/103 (84%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+FV++L+G  Y CK+C+TH A+  D++S++FHC+ G+AYLF++ VN+TVG  E R+M
Sbjct:     1 MGRLFVIDLEGLVYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRVM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
             ++G HTVADIFC SCG +VGWKYE A +KSQKYKEGKF+LER+
Sbjct:    61 ITGWHTVADIFCVSCGSLVGWKYEIAYDKSQKYKEGKFILERF 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
 Identities = 61/103 (59%), Positives = 82/103 (79%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+F+V+L+G  Y CK C+THL+  +D++S++F C+ G+AYLFN+ VN++VG  E+R+M
Sbjct:     1 MGRVFMVDLEGNIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRMM 60

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
             ++G+H V DIFC  CG  VGWKYE A EKSQKYKEGK VLE Y
Sbjct:    61 ITGLHNVVDIFCVGCGSNVGWKYEFAHEKSQKYKEGKSVLELY 103

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
 Identities = 64/103 (62%), Positives = 82/103 (79%)

Query:     1 MGRIFVVELDGRSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             MGR+F+V L+G+SY CK C+T+LAL +D+VS++F  R GKAYLF+  VN+  G  E+R+M
Sbjct:    34 MGRLFLVNLEGKSYSCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRMM 93

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERY 103
             ++GMHTV DI+C  CG  VGWKYE A EK+QKYKEGK VLERY
Sbjct:    94 MTGMHTVVDIYCVKCGSYVGWKYEFAFEKNQKYKEGKSVLERY 136

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
 Identities = 55/103 (53%), Positives = 73/103 (70%)

Query:     1 MGRIFVVELDGRSYRCKF-CRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
             MGR+F   L G S  C   C+THL L + L+S+ F  R G A+LF +  NITVG SE+R 
Sbjct:     1 MGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRT 60

Query:    60 MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLER 102
             + +GMH VADI+C  CG+ +GWKYE A+E+SQKYK GK++LE+
Sbjct:    61 LTTGMHIVADIYCIDCGETLGWKYEFAKEESQKYKVGKYILEK 103

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
 Identities = 55/101 (54%), Positives = 72/101 (71%)

Query:     3 RIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLM 60
             + F   LD   R Y C  CR HLA  +DL+S++F   +G+AYLFNS VN+  G +EERL+
Sbjct:     8 KTFQAYLDSCHRRYSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLL 67

Query:    61 LSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
             L+G+H VADI+C +C   +GWKYE A E SQKYKEGKF++E
Sbjct:    68 LTGLHAVADIYCENCHTTLGWKYEQAFELSQKYKEGKFIIE 108

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
             R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
             C SC   +GWKYE A E SQKYKEGK+++E
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
             R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
             C SC   +GWKYE A E SQKYKEGK+++E
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 51/90 (56%), Positives = 69/90 (76%)

Query:    12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIF 71
             R+Y C  CR HLA  ++L+S++F    G+AYLFNS VN+  G +E+RL+L+G+H+VADIF
Sbjct:    27 RTYSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIF 86

Query:    72 CCSCGQIVGWKYESAREKSQKYKEGKFVLE 101
             C SC   +GWKYE A E SQKYKEGK+++E
Sbjct:    87 CESCKTTLGWKYEQAFETSQKYKEGKYIIE 116

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN32	YIPL7_ARATH	No assigned EC number	0.6369	0.7619	0.9922	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh2_kg.8__1290__AT5G53940.1 annotation not avaliable (129 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	3e-61

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  184 bits (469), Expect = 3e-61
 Identities = 64/105 (60%), Positives = 79/105 (75%), Gaps = 1/105 (0%)

Query: 1   MGRIFVVELDG-RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERL 59
           MGR+FVV L G R Y CK C+THLAL  D++S++F  R G+AYLFN  VN+  G  E+R 
Sbjct: 1   MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 60  MLSGMHTVADIFCCSCGQIVGWKYESAREKSQKYKEGKFVLERYM 104
           ML+G+HTV DIFC  CG  +GWKYE A E+SQKYKEGKF+LER +
Sbjct: 61  MLTGLHTVRDIFCVGCGTTLGWKYEFAYEESQKYKEGKFILERAL 105

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.97
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	95.68
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	93.43
PRK00222	142	methionine sulfoxide reductase B; Provisional	93.39
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	93.17
PRK05508	119	methionine sulfoxide reductase B; Provisional	92.66
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	90.18
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	88.87
COG0229	140	Conserved domain frequently associated with peptid	84.69

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=8.3e-50  Score=310.27  Aligned_cols=109  Identities=56%  Similarity=1.015  Sum_probs=106.4

Q ss_pred             CcceeeeecCC--ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCc
Q 030967            1 MGRIFVVELDG--RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQI   78 (168)
Q Consensus         1 MGr~F~~yL~g--~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~   78 (168)
                      |||+|..+|++  +.|+|++|+||||.++|||||+|+|++|+||||++|+||..|+.|+|.|+||+|+|+||+|+.|++.
T Consensus         1 mgR~F~~~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~   80 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTG   80 (122)
T ss_pred             CcchHHHHhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCC
Confidence            99999999999  5999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEecccCcceecCeEEEEecceeEee
Q 030967           79 VGWKYESAREKSQKYKEGKFVLERYMRYVSL  109 (168)
Q Consensus        79 LGWKYe~A~E~SQKYKEGKfILE~~~i~~~~  109 (168)
                      ||||||.|||+||||||||||||+++|....
T Consensus        81 ~GWkYe~a~e~sQkyKEGk~ilE~~~i~~~~  111 (122)
T KOG3399|consen   81 LGWKYEHAYEKSQKYKEGKFILELAEIFKPE  111 (122)
T ss_pred             cceeeeeccCchhhhcCcchHHHHHHhcCCC
Confidence            9999999999999999999999998887764

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.97  E-value=1.7e-31  Score=194.67  Aligned_cols=89  Identities=55%  Similarity=1.001  Sum_probs=85.1

Q ss_pred             eEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeec----EEEeeeeeccCCCceeeEEEEecc
Q 030967           13 SYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGM----HTVADIFCCSCGQIVGWKYESARE   88 (168)
Q Consensus        13 ~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~----H~V~DI~C~~C~t~LGWKYe~A~E   88 (168)
                      +|.|++|++||+++++|+|  |+|+.|+||||+   ||..+++++|.|+||.    |+|+|++|.+|++.|||||++|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7778888899999999    999999999999999999999999


Q ss_pred             cCcceecCeEEEEecceeE
Q 030967           89 KSQKYKEGKFVLERYMRYV  107 (168)
Q Consensus        89 ~SQKYKEGKfILE~~~i~~  107 (168)
                      + |+||||+||||++.|..
T Consensus        77 ~-~~~k~g~file~~~i~~   94 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASISS   94 (96)
T ss_pred             h-HhhhCCEEEEEhhHEEE
Confidence            9 99999999999998864

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=95.68  E-value=0.0071  Score=46.87  Aligned_cols=88  Identities=16%  Similarity=0.168  Sum_probs=58.3

Q ss_pred             eEEecCCCCccCCCCCeeeeeecc--CCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEEecccC
Q 030967           13 SYRCKFCRTHLALPEDLVSRAFHC--RRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREKS   90 (168)
Q Consensus        13 ~y~C~~C~thLA~~~eLISk~F~G--~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~A~E~S   90 (168)
                      .+.|++|.+.++..+||-.-.-+.  --.+.  |...+.+...+++.....-+.+....|+|.+|++.+|-.+..---+=
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~yk~~~L   81 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMKYKGVEL   81 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEEETTEEE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheEECCccc
Confidence            478999999999999987642110  00122  33555666665554445568889999999999999998776544344


Q ss_pred             cceecCeEEEEe
Q 030967           91 QKYKEGKFVLER  102 (168)
Q Consensus        91 QKYKEGKfILE~  102 (168)
                      .-.|.-.|+++.
T Consensus        82 P~L~iksfvv~~   93 (123)
T PF11648_consen   82 PCLKIKSFVVEL   93 (123)
T ss_dssp             EEE-GGGEEEEE
T ss_pred             cEEEeeeeeeee
Confidence            455666666443

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>TIGR00357 methionine-R-sulfoxide reductase

Probab=93.43  E-value=0.078  Score=42.46  Aligned_cols=66  Identities=20%  Similarity=0.360  Sum_probs=41.8

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=.+++    .|....|=.-.+..+-.-.+...+|..  -|+.. ..|.|.+|+.+||--..
T Consensus        39 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~  104 (134)
T TIGR00357        39 GIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEVVAYERDES--HGMIR-TEVRCRNCDAHLGHVFD  104 (134)
T ss_pred             eEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCceEEeecCC--CCcEE-EEEEecCCCCccCcccC
Confidence            78999999999987764    455555544444444111122233322  24444 57999999999997554

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=93.39  E-value=0.066  Score=43.26  Aligned_cols=67  Identities=16%  Similarity=0.360  Sum_probs=42.4

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~   85 (168)
                      -+|.|+.|+++|=++++    .|....|=.-.+..+-.-.+...+|+.  -|+.. ..|.|.+|+.+||-....
T Consensus        42 G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~D  108 (142)
T PRK00222         42 GIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDTS--HGMVR-TEVRCANCDSHLGHVFPD  108 (142)
T ss_pred             eEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeeccC--CCceE-EEEEeCCCCCccCcccCC
Confidence            78999999999987743    466666655545544221222223321  13322 579999999999986643

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=93.17  E-value=0.085  Score=41.66  Aligned_cols=70  Identities=21%  Similarity=0.427  Sum_probs=43.2

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEEecc
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESARE   88 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~A~E   88 (168)
                      -+|.|+.|+++|=..+    ..|....|=.-.+..+..-.+...+|..  -|+. -..|.|.+|+.+||--......
T Consensus        36 G~Y~C~~Cg~pLF~S~----~Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~-R~Ev~C~~Cg~HLGHVF~DGp~  105 (124)
T PF01641_consen   36 GIYVCAVCGTPLFSSD----TKFDSGCGWPSFWQPIPGDAVKEREDFS--HGMV-RTEVRCARCGSHLGHVFDDGPP  105 (124)
T ss_dssp             EEEEETTTS-EEEEGG----GEETSSSSSSEESSCSSTTSEEEEEEEC--TSSE-EEEEEETTTCCEEEEEESTSST
T ss_pred             EEEEcCCCCCccccCc----ccccCCcCCccccCcCChHHEEEecccc--CCce-EEEEEecCCCCccccEeCCCCC
Confidence            7899999999987655    3466666654444443332222233322  1444 4468999999999986664443

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=92.66  E-value=0.13  Score=40.53  Aligned_cols=63  Identities=27%  Similarity=0.494  Sum_probs=42.7

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=+.++    .|....|=.-.+..+-| .+...+|..   | + =..|.|.+|+.+||--..
T Consensus        32 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~-~v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF~   94 (119)
T PRK05508         32 GTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKG-AVKRIPDAD---G-R-RTEIVCANCGGHLGHVFE   94 (119)
T ss_pred             eEEEecCCCCccccccc----cccCCCCCcccCccccc-ceEEEecCC---C-c-EEEEEeCCCCCccCcccC
Confidence            78999999999987764    46666665444555533 233334443   2 2 467999999999997543

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=90.18  E-value=0.23  Score=44.00  Aligned_cols=63  Identities=24%  Similarity=0.438  Sum_probs=42.4

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=++++    .|...+|=.-.++.+-|-.. ..++..   |+  =..|.|.+|+.+||--..
T Consensus        35 G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~-~~~d~~---~~--R~Ev~c~~c~~HLGHvF~   97 (283)
T PRK05550         35 GVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVK-RLPDAD---GR--RTEIVCANCGAHLGHVFE   97 (283)
T ss_pred             cEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccE-EEEcCC---Cc--eEEEEecCCCCccCcccC
Confidence            78999999999987654    46656665444665544322 222222   33  478999999999998654

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=88.87  E-value=0.4  Score=45.54  Aligned_cols=67  Identities=9%  Similarity=0.057  Sum_probs=43.2

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~   85 (168)
                      -+|.|+.|+++|=+++    ..|....|=.-.+..+-+-.+...+|.+  -|++. ..|.|.+|+.+||-....
T Consensus       417 G~y~c~~c~~pLf~s~----~Kf~sg~GWPsF~~~i~~~~v~~~~d~s--~g~~R-~Ev~c~~c~~HLGHvf~d  483 (521)
T PRK14018        417 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKVVTEHDDFS--YNMRR-TEVRSRAADSHLGHVFPD  483 (521)
T ss_pred             EEEEecCCCCccccCc----ccccCCCCCcccCcccCcCceEEeeccC--CCceE-EEEEECCCCCcCCcccCC
Confidence            7899999999998875    3466666654444444322222233322  24444 479999999999986644

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=84.69  E-value=1.3  Score=36.06  Aligned_cols=64  Identities=23%  Similarity=0.412  Sum_probs=42.1

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWK   82 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWK   82 (168)
                      -+|.|+.|+.+|=.+++    .|....|=--.+.-+.+-.+...+|+  .-|++.+ .|.|.+|+++||--
T Consensus        41 GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~Rt-EVrc~~c~sHLGHV  104 (140)
T COG0229          41 GIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVRT-EVRCANCDSHLGHV  104 (140)
T ss_pred             ceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEEE-EEEecCCCCccccc
Confidence            78999999999987764    45555554433444444344444443  2355443 68999999999963

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	94.81
3ga3_A	133	Interferon-induced helicase C domain-containing pr	93.07
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	92.06
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	91.99
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	91.32
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	90.69
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	90.64
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	90.59
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	90.47
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	88.5
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	88.38
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	86.16
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	84.42
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	84.02
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	83.49

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=94.81  E-value=0.012  Score=46.36  Aligned_cols=91  Identities=16%  Similarity=0.189  Sum_probs=57.7

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCC----CceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEEec
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRR----GKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAR   87 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~----GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~A~   87 (168)
                      -.+.|++|.+.++..+||-.-.  +.+    +++  |...+.+..++..-.....+...-..|.|.+|++.+|-....--
T Consensus        12 vkllCrkC~~~~C~g~DIr~ie--~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~~m~yk~   87 (145)
T 3eqt_A           12 VQLLCINCMVAVGHGSDLRKVE--GTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGLQMIYKS   87 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEET--TTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEEEEEETT
T ss_pred             eEEECCCCCeeEEeccceEEec--cceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHhhEEecc
Confidence            5699999999999999985431  111    111  11223332222111111345567788999999999998776655


Q ss_pred             ccCcceecCeEEEEeccee
Q 030967           88 EKSQKYKEGKFVLERYMRY  106 (168)
Q Consensus        88 E~SQKYKEGKfILE~~~i~  106 (168)
                      -+=.-.|.-.|++|...-.
T Consensus        88 ~~LP~LkIksFVve~~~g~  106 (145)
T 3eqt_A           88 VKLPVLKVRSMLLETPQGR  106 (145)
T ss_dssp             EEEEEECGGGEEEEETTEE
T ss_pred             ccCceEeEEEEEEEcCCCc
Confidence            5567788889998775443

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=93.07  E-value=0.052  Score=42.26  Aligned_cols=87  Identities=18%  Similarity=0.239  Sum_probs=56.4

Q ss_pred             ceEEecCCCCccCCCCCeeeee--eccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEEeccc
Q 030967           12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYESAREK   89 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~--F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~A~E~   89 (168)
                      -.+.|++|.+.++..+||-.-.  -.=.-+++  |...+.+..-++..+. ..+...-..|.|. |++.+|-....---+
T Consensus        11 vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~--F~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~~m~yk~~~   86 (133)
T 3ga3_A           11 ITFLCKNCSVLACSGEDIHVIEKMHHVNMTPE--FKELYIVRENKALQKK-CADYQINGEIICK-CGQAWGTMMVHKGLD   86 (133)
T ss_dssp             EEEEETTTCCEEEEGGGCEEETTTEEECCCTG--GGGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEEEEEETTEE
T ss_pred             EEEEccCCCeeEEeccceEEeccceEEeeChh--heeeEEecCCCCccch-hccccCCceEEEe-cCChhhhhEEecccc
Confidence            4589999999999999975431  11111111  2234444422222233 4667888999999 999988877655445


Q ss_pred             CcceecCeEEEEe
Q 030967           90 SQKYKEGKFVLER  102 (168)
Q Consensus        90 SQKYKEGKfILE~  102 (168)
                      =.-.|.-.|++|.
T Consensus        87 LP~LkIksFVve~   99 (133)
T 3ga3_A           87 LPCLKIRNFVVVF   99 (133)
T ss_dssp             EEEECGGGEEEEE
T ss_pred             CceEEEEEEEEEc
Confidence            6677888888875

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=92.06  E-value=0.06  Score=42.52  Aligned_cols=65  Identities=14%  Similarity=0.161  Sum_probs=41.7

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=.+++    .|....|=.-.+..+-+ .+...+|+.  -|+.. ..|.|.+|+.+||--..
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~  105 (144)
T 3e0o_A           41 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFN  105 (144)
T ss_dssp             EEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEES
T ss_pred             EEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccC
Confidence            78999999999877653    45555665443444433 333334432  24432 46899999999998654

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=91.99  E-value=0.087  Score=41.63  Aligned_cols=67  Identities=9%  Similarity=0.068  Sum_probs=41.6

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~   85 (168)
                      -+|.|+.|+++|=+++    ..|....|=.-.+..+-.-.+...+|+.+  |+. =..|.|.+|+.+||--...
T Consensus        42 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D  108 (146)
T 3hcg_A           42 GIYVDVVSGEPLFSSA----DKYDSGCGWPSFTRPIDAKSVTEHDDFSY--NMR-RTEVRSHAADSHLGHVFPD  108 (146)
T ss_dssp             EEEEETTTCCEEEEGG----GEECCSSSSCEESSCSSGGGEEEEEEEET--TEE-EEEEEETTTCCEEEEEESC
T ss_pred             EEEEecCCCcccccCc----ccccCCCCChhhccccCCCceEEeecCCC--CcE-EEEEEeCCCCCccCceeCC
Confidence            7899999999986665    34665666544444332211222334321  333 3578999999999986543

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=91.32  E-value=0.093  Score=40.52  Aligned_cols=64  Identities=16%  Similarity=0.289  Sum_probs=38.0

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY   83 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY   83 (168)
                      -+|.|+.|.++|=.+++=    |....|=.-.++.+-.-.+-..+++   .|.. ...|.|++|+.+||=-.
T Consensus        19 G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF   82 (124)
T 2kv1_A           19 GVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEF   82 (124)
T ss_dssp             EEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEEC
T ss_pred             EEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCcc
Confidence            689999999999887653    5555554332333211111112222   1221 35799999999999743

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=90.69  E-value=0.083  Score=42.51  Aligned_cols=66  Identities=24%  Similarity=0.467  Sum_probs=41.3

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=.+++    .|....|=.-.+..+-+-.+...+|..  -|+ .-..|.|..|+.+||=-..
T Consensus        72 GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm-~RtEV~C~~Cg~HLGHVF~  137 (164)
T 3cxk_A           72 GIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGM-TRVEVRCNQCGAHLGHVFE  137 (164)
T ss_dssp             EEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGC-CEEEEEETTTCCEEEEEES
T ss_pred             eEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCc-EEEEEEeCCCCCccCcccC
Confidence            78999999999876653    465555654434443221222333332  143 2456899999999998553

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=90.59  E-value=0.19  Score=39.53  Aligned_cols=79  Identities=20%  Similarity=0.351  Sum_probs=54.0

Q ss_pred             ceEEecCCCCccCCCCCee----------eeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCce
Q 030967           12 RSYRCKFCRTHLALPEDLV----------SRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIV   79 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLI----------Sk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~L   79 (168)
                      -.+.|++|.+.+++.+||-          .+.|.          ..+.+..-+. ++ ..-+..+-..|+|.  +|++.+
T Consensus        26 v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~-~k-~f~d~~~~g~I~C~~~~Cg~~W   93 (145)
T 2qfd_A           26 KKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPK-PK-QFSSFEKRAKIFCARQNCSHDW   93 (145)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSS-CC-CCSSEEEEEEEEECSTTTCCEE
T ss_pred             eEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcc-cc-hhhceeCCceEEeCCcccCcch
Confidence            4599999999999999983          33443          2233331111 11 24455678899999  999999


Q ss_pred             eeEEEEecccCcceecCeEEEEe
Q 030967           80 GWKYESAREKSQKYKEGKFVLER  102 (168)
Q Consensus        80 GWKYe~A~E~SQKYKEGKfILE~  102 (168)
                      |-....---+-.-.|.-.|+||.
T Consensus        94 G~~m~yk~~~lP~LkIksFVv~~  116 (145)
T 2qfd_A           94 GIHVKYKTFEIPVIKIESFVVED  116 (145)
T ss_dssp             EEEEEETTEEEEEECGGGEEEEC
T ss_pred             hceEEEccccCceEEEEEEEEEe
Confidence            88765544446677888888885

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=90.47  E-value=0.074  Score=39.97  Aligned_cols=64  Identities=16%  Similarity=0.292  Sum_probs=38.8

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKY   83 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY   83 (168)
                      -+|.|+.|.++|=.++    ..|....|=.-.+..+-.-.+...+|.   .++ .-..|.|.+|+.+||--.
T Consensus        12 G~Y~C~~Cg~pLF~S~----~KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A           12 GVYVCAKCGYELFSSR----SKYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             EEEEETTTCCEEEEGG----GEECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             EEEEcCCCCCccccCC----cccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            7899999999986655    346555565443443321111111221   121 246899999999999855

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=88.50  E-value=0.23  Score=37.84  Aligned_cols=87  Identities=20%  Similarity=0.304  Sum_probs=55.8

Q ss_pred             ceEEecCCCCccCCCCCeeeee--eccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 030967           12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR   87 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~--F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~LGWKYe~A~   87 (168)
                      ..+.|++|.+.+++.+||-.-.  -+=.-+++  |...+.+...+. .+. .-+.+.-..|.|.  +|++.+|-....--
T Consensus         4 ~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~   79 (121)
T 3lrr_A            4 KKLLCRKCKALACYTADVRVIEESHYTVLGDA--FKECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGIHVKYKT   79 (121)
T ss_dssp             EEEEETTTCCEEEEGGGEEEETTTEEEECSHH--HHTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEEEEEETT
T ss_pred             EEEECCCCCeEEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhheEEecc
Confidence            4589999999999999974331  11001111  112333322222 222 3466788899999  99999998776655


Q ss_pred             ccCcceecCeEEEEe
Q 030967           88 EKSQKYKEGKFVLER  102 (168)
Q Consensus        88 E~SQKYKEGKfILE~  102 (168)
                      -+=.-.|.-.|++|.
T Consensus        80 ~~LP~LkI~sfvve~   94 (121)
T 3lrr_A           80 FEIPVIKIESFVVED   94 (121)
T ss_dssp             EEEEEECGGGEEEEE
T ss_pred             ccCceEEEEEEEEEe
Confidence            556778888888887

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=88.38  E-value=0.11  Score=41.39  Aligned_cols=67  Identities=24%  Similarity=0.548  Sum_probs=41.6

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~   85 (168)
                      -+|.|+.|+++|=++++    .|....|=.-.+..+-.-.+...+|+.+  |+. =..|.|..|+.+||--...
T Consensus        60 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s~--gm~-RtEV~C~~Cg~HLGHVF~D  126 (151)
T 2k8d_A           60 GIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRSL--GMV-RCEVLCARCDAHLGHVFDD  126 (151)
T ss_dssp             SEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBTT--SSC-EEEEEETTEEEEEEEEEEC
T ss_pred             EEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCCC--Cce-EEEEEeCCCCCcCCcccCC
Confidence            78999999999876653    4655566544344433212222334321  333 2468999999999986643

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=86.16  E-value=0.21  Score=38.70  Aligned_cols=87  Identities=17%  Similarity=0.292  Sum_probs=52.3

Q ss_pred             ceEEecCCCCccCCCCCeeeee--eccCCCceEEeceeeecccCccceeEeeeecEEEeeeeec--cCCCceeeEEEEec
Q 030967           12 RSYRCKFCRTHLALPEDLVSRA--FHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCC--SCGQIVGWKYESAR   87 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~--F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~--~C~t~LGWKYe~A~   87 (168)
                      ..+.|++|.+.+++.+||-.-.  -+=.-+++  |...+.+...+. .+. .-+.+.-..|.|.  +|++.+|-....--
T Consensus         6 ~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~~m~yk~   81 (131)
T 4a2v_A            6 KNLLCGKCKAYACSTDDIRIIKDSHHIVLGEA--FKERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGITVKYLT   81 (131)
T ss_dssp             CEEEETTTCCEEEEGGGEEEETTTEEEECSSG--GGGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEEEEEETT
T ss_pred             eEEEccCCCeeEEeccceEEeecceEEeeChh--heeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhhhEeecC
Confidence            5689999999999999974331  10000111  112223311111 122 2456678889999  99999887665433


Q ss_pred             cc-CcceecCeEEEEe
Q 030967           88 EK-SQKYKEGKFVLER  102 (168)
Q Consensus        88 E~-SQKYKEGKfILE~  102 (168)
                      -+ =.-.|.-.|++|.
T Consensus        82 ~~~LP~LkIksFVve~   97 (131)
T 4a2v_A           82 FDNLPVIKIKSFVMES   97 (131)
T ss_dssp             EEEEEEECGGGEEECC
T ss_pred             cccCceEeEEEEEEEe
Confidence            33 4567888888876

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=84.42  E-value=0.15  Score=40.68  Aligned_cols=66  Identities=21%  Similarity=0.432  Sum_probs=38.0

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=.+++    .|....|=.-.+..+-.-.+...+|..  -|+. =..|.|.+|+.+||--..
T Consensus        49 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~  114 (154)
T 3hcj_A           49 GVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMI-RTEIVCARCDSHLGHVFP  114 (154)
T ss_dssp             EEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTS-CEEEEETTTCCEEEEEES
T ss_pred             EEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCce-EEEEEeCCCCCccCCccC
Confidence            78999999999876653    355445542223322111111122221  1332 257899999999998554

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=84.02  E-value=0.23  Score=39.09  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=38.3

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecc--------cCccceeEeeeecEEEeeeeeccCCCceeeEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNIT--------VGASEERLMLSGMHTVADIFCCSCGQIVGWKY   83 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~--------~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKY   83 (168)
                      -+|.|+.|+++|=++++    .|....|=.- |.+.+++.        +...+|+.  -|+. =..|.|..|+.+||=-.
T Consensus        36 G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF  107 (143)
T 2l1u_A           36 GMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDTS--LGCP-RMEVVCKQCEAHLGHVF  107 (143)
T ss_dssp             EEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEECT--TSSC-EEEEEESSSCCCCEEEE
T ss_pred             eEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeeccc--CCce-EEEEEECCCCCcCCccc
Confidence            78999999999866643    4554444432 23333211        11122221  1333 34689999999999866


Q ss_pred             E
Q 030967           84 E   84 (168)
Q Consensus        84 e   84 (168)
                      .
T Consensus       108 ~  108 (143)
T 2l1u_A          108 P  108 (143)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=83.49  E-value=0.4  Score=41.85  Aligned_cols=66  Identities=12%  Similarity=0.055  Sum_probs=40.8

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=+++    ..|....|=.-.+..+-.-.+...+|+.+  |+. =..|.|.+|+.+||--..
T Consensus       208 G~Y~c~~cg~pLF~S~----~KfdSg~GWPSF~~~i~~~~v~~~~D~s~--gm~-RtEv~c~~c~~HLGHVF~  273 (313)
T 3e0m_A          208 GIYVDITTGEPLFFAK----DKFASGCGWPSFSRPLSKELIHYYKDLSH--GME-RIEVRSRSGSAHLGHVFT  273 (313)
T ss_dssp             EEEEETTTCCEEEEGG----GBCCCCSSSCEESSCSSGGGEEEEEECCT--TCC-EEEEEESSSCCEEEEEES
T ss_pred             eEEEecCCCccccCCC----ccccCCCCCcccCcccCCCceEEeecCCC--CcE-EEEEECCCCCCccCcccC
Confidence            7899999999986654    34665566544344332111222233321  443 357899999999998554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	87.91
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	86.74

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=87.91  E-value=0.09  Score=39.41  Aligned_cols=67  Identities=10%  Similarity=0.084  Sum_probs=39.9

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYES   85 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe~   85 (168)
                      -+|.|+.|+++|=.+++    .|.-..|=.-.++.+-+-.....+|..  -|+.. ..|.|.+|+.+||=-...
T Consensus        41 G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~s--~gm~R-~Ev~C~~Cg~HLGHVF~D  107 (144)
T d1l1da_          41 GIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--FNMRR-TEVRSRAADSHLGHVFPD  107 (144)
T ss_dssp             EEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEECC--TTSCE-EEEEETTTCCEEEEEESC
T ss_pred             CceEeccccceeeehhh----cccCCccceeeccccccccccceeccc--ccccc-eeeEecCCCCccCcccCC
Confidence            78999999999876543    365555543334433332222222211  13322 378999999999985543

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=86.74  E-value=0.11  Score=38.91  Aligned_cols=65  Identities=12%  Similarity=0.124  Sum_probs=38.3

Q ss_pred             ceEEecCCCCccCCCCCeeeeeeccCCCceEEeceeeecccCccceeEeeeecEEEeeeeeccCCCceeeEEE
Q 030967           12 RSYRCKFCRTHLALPEDLVSRAFHCRRGKAYLFNSAVNITVGASEERLMLSGMHTVADIFCCSCGQIVGWKYE   84 (168)
Q Consensus        12 ~~y~C~~C~thLA~~~eLISk~F~G~~GrAyLF~~vvNV~~G~~e~r~m~TG~H~V~DI~C~~C~t~LGWKYe   84 (168)
                      -+|.|+.|+++|=..++    .|.-..|=.-.++.+-+-.. ..+|..  -|+ .=..|.|.+|+.+||--..
T Consensus        40 G~Y~C~~C~~pLF~S~~----KfdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~  104 (143)
T d1xm0a1          40 GLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFN  104 (143)
T ss_dssp             EEEEESSTTCEEEETTT----CCCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEE
T ss_pred             ceEEeccccchhhhhhh----hhccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCC
Confidence            68999999999977664    35555554333443322111 112211  111 2357899999999996553