Citrus Sinensis ID: 030971

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------17
Protein Sequence
MNQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHccccccccccccccccccccccccccHHHHHHHccHHHHccccccccccccccccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEccccccccccccccccccccHHHccccEEcccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccHHHHHHHcccccEEEccccccccccccccccccccccccHHHHHHHHHHcccccHHHHHHHHHHHHHcccEcc
Coil and Loop (DISEMBL)
mnqndsnlkyctdckttktplwrggpagpkslcnacgirfrkkKRVFEGLkkrsdkkkdkTTNAAAAAASASAKVVtekadgtgnasccvnglgDSFKMRLMALGQEVLlqrsspsssspsttsksspslflpsvvAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA
Flexible Loop (DISEMBL)
mnqndsnlkycTDCKttktplwrggpagpkslcnacgirfrkkkrvfeglkkrsdkkkdkttnAAAAaasasakvvtekadgtgNASCCVNGLGDSFKMRLMALGQEVLLQRsspsssspsttsksspslflpsvvakKQRCQRKRKLKEEEQAAFslmalscgfvfa
Low Complexity Region (SEG)
MNQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLkkrsdkkkdkttnaaaaaasasakvvtekaDGTGNASCCVNGLGDSFKMRLMALGQEVLLQRsspsssspsttsksspslflpsVVakkqrcqrkrklkeeeqaaFSLMALSCGFVFA
Disordered region (IsUnstruct)
********KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVF*************************************NASCCVNGLGDSFKMRLMALGQEVL**********************************************FSLMALSCGFV**
Disordered Region (DISOPRED)
***********TDCKTTKTPLWRGGPAGPKSLCNACGIRF******************************************************************************************************************AFSLMALSCGFVFA
Disordered Region (DISEMBL)
MNQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLK*******************************TGNASCCVNGLGDSFKMRLMALGQEVL*******************SLFLPSVV***************EQAAFSLMALSCGFVFA
Disordered Region (DISPRO)
*****SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS****************************************D**KMRLMALGQEVLLQ******************LFLPSVVAKKQRCQ*KRKLKEEEQAAFSLMALSCGFVFA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	168	2.2.26 [Sep-21-2011]
Q8LG10	149	GATA transcription factor	yes	no	0.607	0.684	0.422	4e-22
Q9FJ10	139	GATA transcription factor	no	no	0.666	0.805	0.372	3e-17
Q8LC59	120	GATA transcription factor	no	no	0.267	0.375	0.644	1e-13
Q5HZ36	398	GATA transcription factor	no	no	0.232	0.097	0.717	1e-11
Q9SZI6	352	Putative GATA transcripti	no	no	0.214	0.102	0.75	2e-11
Q6QPM2	211	GATA transcription factor	no	no	0.309	0.246	0.508	6e-11
Q6DBP8	303	GATA transcription factor	no	no	0.267	0.148	0.6	6e-11
Q9ZPX0	208	GATA transcription factor	no	no	0.208	0.168	0.742	6e-11
Q8LC79	295	GATA transcription factor	no	no	0.208	0.118	0.742	8e-11
Q8VZP4	308	GATA transcription factor	no	no	0.279	0.152	0.510	1e-09

>sp|Q8LG10|GAT15_ARATH GATA transcription factor 15 OS=Arabidopsis thaliana GN=GATA15 PE=2 SV=2

 Score =  103 bits (258), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 65/154 (42%), Positives = 76/154 (49%), Gaps = 52/154 (33%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAA 68
           K C  C T+KTPLWRGGPAGPKSLCNACGIR RKK+R    +  RS+ KK K+ N     
Sbjct: 41  KSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRRTL--ISNRSEDKKKKSHNRNPK- 97

Query: 69  ASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSP 128
                                    GDS K RLM LG+EV++QRS+  +           
Sbjct: 98  ------------------------FGDSLKQRLMELGREVMMQRSTAEN----------- 122

Query: 129 SLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALS 162
                         QR+ KL EEEQAA  LMALS
Sbjct: 123 --------------QRRNKLGEEEQAAVLLMALS 142

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FJ10|GAT16_ARATH GATA transcription factor 16 OS=Arabidopsis thaliana GN=GATA16 PE=2 SV=1

 Score = 88.2 bits (217), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 64/172 (37%), Positives = 82/172 (47%), Gaps = 60/172 (34%)

Query: 1   MNQNDSNL----KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDK 56
           + QN++++    K C DC T+KTPLWRGGP GPKSLCNACGIR RKK+R           
Sbjct: 24  IEQNNTSVNDKKKTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRR----------- 72

Query: 57  KKDKTTNAAAAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPS 116
                        +   K + + + G GN        G+S K  LM LG   + +RS+  
Sbjct: 73  -----------GGTEDNKKLKKSSSGGGNRK-----FGESLKQSLMDLG---IRKRST-- 111

Query: 117 SSSPSTTSKSSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                                +KQR    +KL EEEQAA  LMALS G V+A
Sbjct: 112 --------------------VEKQR----QKLGEEEQAAVLLMALSYGSVYA 139

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC59|GAT23_ARATH GATA transcription factor 23 OS=Arabidopsis thaliana GN=GATA23 PE=2 SV=2

 Score = 75.9 bits (185), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query: 1  MNQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
          M +    ++ C++CKTTKTP+WRGGP GPKSLCNACGIR RK++R
Sbjct: 18 MKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRR 62

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5HZ36|GAT21_ARATH GATA transcription factor 21 OS=Arabidopsis thaliana GN=GATA21 PE=1 SV=2

 Score = 69.3 bits (168), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 28/39 (71%), Positives = 32/39 (82%)

Query: 4   NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRK 42
           N+  ++ C+DC TTKTPLWR GP GPKSLCNACGIR RK
Sbjct: 225 NNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRK 263

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SZI6|GAT22_ARATH Putative GATA transcription factor 22 OS=Arabidopsis thaliana GN=GATA22 PE=2 SV=1

 Score = 68.6 bits (166), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 27/36 (75%), Positives = 30/36 (83%)

Query: 4   NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIR 39
           ND  ++ C+DC TTKTPLWR GP GPKSLCNACGIR
Sbjct: 194 NDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIR 229

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6QPM2|GAT19_ARATH GATA transcription factor 19 OS=Arabidopsis thaliana GN=GATA19 PE=2 SV=2

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 30/59 (50%), Positives = 39/59 (66%), Gaps = 7/59 (11%)

Query: 11  CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAAA 69
           C +C TT TPLWR GP GPKSLCNACGIRF+K++R       R+   ++ T+   + AA
Sbjct: 77  CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER-------RASTARNSTSGGGSTAA 128

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6DBP8|GAT11_ARATH GATA transcription factor 11 OS=Arabidopsis thaliana GN=GATA11 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 27/45 (60%), Positives = 35/45 (77%)

Query: 4   NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFE 48
           +D  ++ CT C+TTKTP WR GP+GPK+LCNACG+RFR  + V E
Sbjct: 215 SDGIVRKCTHCETTKTPQWREGPSGPKTLCNACGVRFRSGRLVPE 259

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZPX0|GAT20_ARATH GATA transcription factor 20 OS=Arabidopsis thaliana GN=GATA20 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 29/35 (82%)

Query: 11  CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
           C  C TT TPLWR GP GPKSLCNACGIRF+K++R
Sbjct: 94  CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LC79|GAT18_ARATH GATA transcription factor 18 OS=Arabidopsis thaliana GN=GATA18 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 26/35 (74%), Positives = 30/35 (85%)

Query: 11  CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
           C +C TT TPLWR GP GPKSLCNACGIRF+K++R
Sbjct: 154 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 188

Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZP4|GAT10_ARATH GATA transcription factor 10 OS=Arabidopsis thaliana GN=GATA10 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 24/47 (51%), Positives = 35/47 (74%)

Query: 2   NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFE 48
           +++D  ++ CT C+T  TP WR GP+GPK+LCNACG+RF+  + V E
Sbjct: 211 SKSDGIVRICTHCETITTPQWRQGPSGPKTLCNACGVRFKSGRLVPE 257

Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
224123912	161	predicted protein [Populus trichocarpa]	0.821	0.857	0.543	5e-33
225431869	153	PREDICTED: GATA transcription factor 16	0.708	0.777	0.478	2e-25
147814791	125	hypothetical protein VITISV_042395 [Viti	0.636	0.856	0.443	6e-24
225450647	124	PREDICTED: GATA transcription factor 16-	0.636	0.862	0.443	7e-24
449432898	148	PREDICTED: GATA transcription factor 16-	0.702	0.797	0.436	1e-23
449432896	151	PREDICTED: GATA transcription factor 16-	0.702	0.781	0.436	1e-23
255556286	149	GATA transcription factor, putative [Ric	0.714	0.805	0.466	2e-23
224110254	125	predicted protein [Populus trichocarpa]	0.666	0.896	0.462	7e-23
357511771	129	GATA transcription factor [Medicago trun	0.642	0.837	0.418	7e-22
255542842	151	conserved hypothetical protein [Ricinus	0.803	0.894	0.451	1e-21

>gi|224123912|ref|XP_002330240.1| predicted protein [Populus trichocarpa] gi|222871696|gb|EEF08827.1| predicted protein [Populus trichocarpa]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 87/160 (54%), Positives = 104/160 (65%), Gaps = 22/160 (13%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAA 68
           K CTDCKTTKTPLWRGGPAGPKSLCNACGIR+RKK+ V   L+K  +KK++KTT +    
Sbjct: 24  KACTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKKRSVMR-LEKGPEKKREKTTTSNTTT 82

Query: 69  ASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSP 128
           A+  + + T     T         + +S +M LM LG+E++LQR                
Sbjct: 83  ATDISTITTATTTNTAQVVSGNGLISESLRMSLMVLGEEMMLQR---------------- 126

Query: 129 SLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
               PSVV KKQRCQRKRKL+EEEQAAFSLMALSCG VFA
Sbjct: 127 ----PSVV-KKQRCQRKRKLREEEQAAFSLMALSCGSVFA 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431869|ref|XP_002275498.1| PREDICTED: GATA transcription factor 16 [Vitis vinifera] gi|296083288|emb|CBI22924.3| unnamed protein product [Vitis vinifera]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/161 (47%), Positives = 87/161 (54%), Gaps = 42/161 (26%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS-DKKKDKTTNAAAA 67
           K C DC TTKTPLWRGGPAGPKSLCNACGIR RKK+R F GL K S D +K K ++  + 
Sbjct: 34  KTCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKRRAFLGLNKGSTDDRKAKRSSNHSH 93

Query: 68  AASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSS 127
                                    LGDS K RL ALG+EVLLQRS+             
Sbjct: 94  NNGGGNGNNK---------------LGDSLKRRLFALGREVLLQRST------------- 125

Query: 128 PSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                     +KQR    RKL EEEQAA  LMALS G+V+A
Sbjct: 126 ---------VEKQR----RKLGEEEQAAVLLMALSYGYVYA 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147814791|emb|CAN74414.1| hypothetical protein VITISV_042395 [Vitis vinifera]

 Score =  115 bits (288), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 85/160 (53%), Gaps = 53/160 (33%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAA 68
           K CTDCKTTKTPLWRGGPAGPKSLCNACGIR+RK++    G+    +KKK++  + +   
Sbjct: 19  KCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRSSMVGV----NKKKERMNSGS--- 71

Query: 69  ASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSP 128
                                 + L ++ K  LMALG EV++QR   S            
Sbjct: 72  ----------------------HDLSETLKQSLMALGNEVMMQRQRSS------------ 97

Query: 129 SLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                    KKQR    RKL EEEQAA  LMALSCG VFA
Sbjct: 98  --------VKKQR----RKLGEEEQAAVLLMALSCGSVFA 125

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450647|ref|XP_002278369.1| PREDICTED: GATA transcription factor 16-like [Vitis vinifera]

 Score =  115 bits (288), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 71/160 (44%), Positives = 85/160 (53%), Gaps = 53/160 (33%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAA 68
           K CTDCKTTKTPLWRGGPAGPKSLCNACGIR+RK++    G+    +KKK++  + +   
Sbjct: 18  KCCTDCKTTKTPLWRGGPAGPKSLCNACGIRYRKRRSSMVGV----NKKKERMNSGS--- 70

Query: 69  ASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSP 128
                                 + L ++ K  LMALG EV++QR   S            
Sbjct: 71  ----------------------HDLSETLKQSLMALGNEVMMQRQRSS------------ 96

Query: 129 SLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                    KKQR    RKL EEEQAA  LMALSCG VFA
Sbjct: 97  --------VKKQR----RKLGEEEQAAVLLMALSCGSVFA 124

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432898|ref|XP_004134235.1| PREDICTED: GATA transcription factor 16-like isoform 2 [Cucumis sativus]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 87/165 (52%), Gaps = 47/165 (28%)

Query: 4   NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTN 63
           N+ N K C DC T+KTPLWRGGPAGPKSLCNACGIR RKK+R   GL K           
Sbjct: 31  NEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSK----------- 79

Query: 64  AAAAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTT 123
                      VV +K +   +     +   DS K RL+ALG+EVL+QRS+         
Sbjct: 80  ----------GVVEDKKNKKSSNISSNSKFRDSLKQRLLALGREVLMQRST--------- 120

Query: 124 SKSSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                         ++QR    +KL EEEQAA  LMALSCG V+A
Sbjct: 121 -------------VERQR----KKLGEEEQAAVLLMALSCGSVYA 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449432896|ref|XP_004134234.1| PREDICTED: GATA transcription factor 16-like isoform 1 [Cucumis sativus]

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 72/165 (43%), Positives = 87/165 (52%), Gaps = 47/165 (28%)

Query: 4   NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTN 63
           N+ N K C DC T+KTPLWRGGPAGPKSLCNACGIR RKK+R   GL K           
Sbjct: 34  NEQNKKTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRRAILGLSK----------- 82

Query: 64  AAAAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTT 123
                      VV +K +   +     +   DS K RL+ALG+EVL+QRS+         
Sbjct: 83  ----------GVVEDKKNKKSSNISSNSKFRDSLKQRLLALGREVLMQRST--------- 123

Query: 124 SKSSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                         ++QR    +KL EEEQAA  LMALSCG V+A
Sbjct: 124 -------------VERQR----KKLGEEEQAAVLLMALSCGSVYA 151

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255556286|ref|XP_002519177.1| GATA transcription factor, putative [Ricinus communis] gi|223541492|gb|EEF43041.1| GATA transcription factor, putative [Ricinus communis]

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 76/163 (46%), Positives = 90/163 (55%), Gaps = 43/163 (26%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS---DKKKDKTTNAA 65
           K C DC TTKTPLWRGGPAGPKSLCNACGIR RKKKR   GL + S   DKK  K +++ 
Sbjct: 27  KSCADCGTTKTPLWRGGPAGPKSLCNACGIRSRKKKRDSLGLNRASSNPDKKSRKHSSSN 86

Query: 66  AAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSK 125
            ++ + ++                   LGD  K RL+ALG+EVL+QRSS           
Sbjct: 87  GSSNNHNSNNSNR--------------LGDGLKQRLLALGREVLMQRSS----------- 121

Query: 126 SSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                       +KQR    RKL EEEQAA  LMALS G V+A
Sbjct: 122 -----------VEKQR----RKLGEEEQAAVLLMALSYGSVYA 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110254|ref|XP_002315462.1| predicted protein [Populus trichocarpa] gi|222864502|gb|EEF01633.1| predicted protein [Populus trichocarpa]

 Score =  112 bits (279), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 74/160 (46%), Positives = 83/160 (51%), Gaps = 48/160 (30%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAA 68
           K C DC T+KTPLWRGGPAGPKSLCNACGIR RKKKR   GL K             AAA
Sbjct: 14  KTCADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKKRDILGLNK-----------GGAAA 62

Query: 69  ASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSP 128
               AK       G+ N     NG  D  K RL+ALG+EVL+Q S+              
Sbjct: 63  NDKRAK------KGSTN-----NGSSDGLKQRLLALGREVLVQGSTVE------------ 99

Query: 129 SLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                         +R+RKL EEEQAA  LMALS G V+A
Sbjct: 100 --------------RRRRKLGEEEQAAVLLMALSYGSVYA 125

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357511771|ref|XP_003626174.1| GATA transcription factor [Medicago truncatula] gi|355501189|gb|AES82392.1| GATA transcription factor [Medicago truncatula]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 67/160 (41%), Positives = 84/160 (52%), Gaps = 52/160 (32%)

Query: 9   KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTTNAAAAA 68
           K+C DCKTTKTPLWRGGP GPK+LCNACGIR+RK++      ++R  K+           
Sbjct: 22  KFCADCKTTKTPLWRGGPNGPKTLCNACGIRYRKRRGCCSKGQERERKR----------- 70

Query: 69  ASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPSTTSKSSP 128
                    EKA+ T + +   + L +  KM+L+ALG+E LLQ+                
Sbjct: 71  ---------EKAEATSSDN---DDLSECLKMKLVALGEEFLLQKK--------------- 103

Query: 129 SLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                         QR  KL EEEQAA  LMALSCGFVFA
Sbjct: 104 --------------QRMIKLGEEEQAAVCLMALSCGFVFA 129

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542842|ref|XP_002512484.1| conserved hypothetical protein [Ricinus communis] gi|223548445|gb|EEF49936.1| conserved hypothetical protein [Ricinus communis]

 Score =  107 bits (268), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 75/166 (45%), Positives = 95/166 (57%), Gaps = 31/166 (18%)

Query: 3   QNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKTT 62
           +NDS  K CTDCKTT+TPLWR GPAGPKSLCNACGIR+RK KR      K S  K+ K  
Sbjct: 17  KNDSK-KSCTDCKTTETPLWRAGPAGPKSLCNACGIRYRKTKRDILSFHK-SPFKRRKRP 74

Query: 63  NAAAAAASASAKVVTEKADGTGNASCCVNGLGDSFKMRLMALGQEVLLQRSSPSSSSPST 122
           N  A   S+++   T             N + +S KMRL+ +GQ +L QRS         
Sbjct: 75  NITATTPSSTSTATTSAT---------TNEVRNSLKMRLIVVGQSMLFQRS--------- 116

Query: 123 TSKSSPSLFLPSVVAKKQRCQRKRKLKEEEQAAFSLMALSCGFVFA 168
                       +V K++  +R++  +EE+QAAFSLMALSCG VFA
Sbjct: 117 -----------KIVRKQRCQRRRKLGQEEQQAAFSLMALSCGSVFA 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	168
TAIR|locus:2083388	149	GATA15 "GATA transcription fac	0.261	0.295	0.733	8.1e-19
TAIR|locus:2155919	139	GATA16 "GATA transcription fac	0.244	0.294	0.761	1.7e-18
TAIR|locus:504955441	197	AT4G16141 [Arabidopsis thalian	0.25	0.213	0.690	1.4e-15
TAIR|locus:2093678	190	GATA17 "GATA transcription fac	0.238	0.210	0.7	2.2e-15
TAIR|locus:2148558	120	GATA23 "GATA transcription fac	0.267	0.375	0.644	2.3e-14
TAIR|locus:2120845	352	CGA1 "cytokinin-responsive gat	0.25	0.119	0.714	4.3e-13
TAIR|locus:2170277	398	GNC "GATA, nitrate-inducible,	0.261	0.110	0.659	1.3e-12
TAIR|locus:2115195	211	GATA19 "GATA transcription fac	0.208	0.165	0.742	6.4e-12
TAIR|locus:2062095	208	GATA20 "GATA transcription fac	0.208	0.168	0.742	8.2e-12
TAIR|locus:2077932	295	MNP "MONOPOLE" [Arabidopsis th	0.244	0.138	0.690	8.7e-12

TAIR|locus:2083388 GATA15 "GATA transcription factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 172 (65.6 bits), Expect = 8.1e-19, Sum P(2) = 8.1e-19
 Identities = 33/45 (73%), Positives = 36/45 (80%)

Query:     2 NQNDSN-LKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             N+  SN  K C  C T+KTPLWRGGPAGPKSLCNACGIR RKK+R
Sbjct:    33 NEAISNEKKSCAICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 77

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2155919 GATA16 "GATA transcription factor 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.7e-18, Sum P(3) = 1.7e-18
 Identities = 32/42 (76%), Positives = 34/42 (80%)

Query:     4 NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             ND   K C DC T+KTPLWRGGP GPKSLCNACGIR RKK+R
Sbjct:    32 NDKK-KTCADCGTSKTPLWRGGPVGPKSLCNACGIRNRKKRR 72

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:504955441 AT4G16141 [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
 Identities = 29/42 (69%), Positives = 35/42 (83%)

Query:     9 KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGL 50
             K C DC T++TPLWRGGPAGPKSLCNACGI+ RKK++   G+
Sbjct:    37 KTCVDCGTSRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGI 78

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2093678 GATA17 "GATA transcription factor 17" [Arabidopsis thaliana (taxid:3702)]

 Score = 168 (64.2 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 28/40 (70%), Positives = 33/40 (82%)

Query:    11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGL 50
             C DC T +TPLWRGGPAGPKSLCNACGI+ RKK++   G+
Sbjct:    44 CVDCGTIRTPLWRGGPAGPKSLCNACGIKSRKKRQAALGM 83

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0009407 "toxin catabolic process" evidence=RCA

TAIR|locus:2148558 GATA23 "GATA transcription factor 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 29/45 (64%), Positives = 37/45 (82%)

Query:     1 MNQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             M +    ++ C++CKTTKTP+WRGGP GPKSLCNACGIR RK++R
Sbjct:    18 MKEEKGTIRCCSECKTTKTPMWRGGPTGPKSLCNACGIRHRKQRR 62

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009416 "response to light stimulus" evidence=IEP

GO:0048527 "lateral root development" evidence=IMP

TAIR|locus:2120845 CGA1 "cytokinin-responsive gata factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 177 (67.4 bits), Expect = 4.3e-13, P = 4.3e-13
 Identities = 30/42 (71%), Positives = 34/42 (80%)

Query:     4 NDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             ND  ++ C+DC TTKTPLWR GP GPKSLCNACGIR RK +R
Sbjct:   194 NDCVIRICSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARR 235

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009735 "response to cytokinin stimulus" evidence=IEP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

TAIR|locus:2170277 GNC "GATA, nitrate-inducible, carbon metabolism-involved" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 1.3e-12, P = 1.3e-12
 Identities = 29/44 (65%), Positives = 35/44 (79%)

Query:     2 NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             + N+  ++ C+DC TTKTPLWR GP GPKSLCNACGIR RK +R
Sbjct:   223 SNNNGVIRVCSDCNTTKTPLWRSGPRGPKSLCNACGIRQRKARR 266

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IMP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0010255 "glucose mediated signaling pathway" evidence=IMP

GO:0051171 "regulation of nitrogen compound metabolic process" evidence=IEP;IMP

GO:0007623 "circadian rhythm" evidence=IEP

GO:0009416 "response to light stimulus" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009740 "gibberellic acid mediated signaling pathway" evidence=IEP

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0010187 "negative regulation of seed germination" evidence=IEP

GO:0010380 "regulation of chlorophyll biosynthetic process" evidence=IMP

GO:0010468 "regulation of gene expression" evidence=IDA

GO:0044212 "transcription regulatory region DNA binding" evidence=IDA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2115195 GATA19 "GATA transcription factor 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 6.4e-12, P = 6.4e-12
 Identities = 26/35 (74%), Positives = 30/35 (85%)

Query:    11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             C +C TT TPLWR GP GPKSLCNACGIRF+K++R
Sbjct:    77 CANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 111

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2062095 GATA20 "GATA transcription factor 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 26/35 (74%), Positives = 29/35 (82%)

Query:    11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             C  C TT TPLWR GP GPKSLCNACGIRF+K++R
Sbjct:    94 CASCDTTSTPLWRNGPKGPKSLCNACGIRFKKEER 128

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

TAIR|locus:2077932 MNP "MONOPOLE" [Arabidopsis thaliana (taxid:3702)]

 Score = 163 (62.4 bits), Expect = 8.7e-12, P = 8.7e-12
 Identities = 29/42 (69%), Positives = 34/42 (80%)

Query:     5 DSNL-KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
             DS L + C +C TT TPLWR GP GPKSLCNACGIRF+K++R
Sbjct:   147 DSLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEER 188

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IEP

GO:0008270 "zinc ion binding" evidence=IEA

GO:0043565 "sequence-specific DNA binding" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IGI

GO:0009790 "embryo development" evidence=IMP

GO:0048446 "petal morphogenesis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_1330084 hypothetical protein (161 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	168
pfam00320	36	pfam00320, GATA, GATA zinc finger	1e-14
smart00401	52	smart00401, ZnF_GATA, zinc finger binding to DNA c	2e-13
cd00202	54	cd00202, ZnF_GATA, Zinc finger DNA binding domain;	3e-11

>gnl|CDD|109380 pfam00320, GATA, GATA zinc finger

 Score = 63.8 bits (156), Expect = 1e-14
 Identities = 21/36 (58%), Positives = 27/36 (75%)

Query: 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRV 46
          C++C TTKTPLWR GP G ++LCNACG+ +RK    
Sbjct: 1  CSNCGTTKTPLWRRGPDGNRTLCNACGLYYRKHGLK 36

This domain uses four cysteine residues to coordinate a zinc ion. This domain binds to DNA. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. Length = 36

>gnl|CDD|214648 smart00401, ZnF_GATA, zinc finger binding to DNA consensus sequence [AT]GATA[AG]

 Score = 61.3 bits (149), Expect = 2e-13
 Identities = 22/47 (46%), Positives = 32/47 (68%)

Query: 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKK 57
          C++C TT+TPLWR GP+G K+LCNACG+ ++K   +   L  + D  
Sbjct: 6  CSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSLKKDGI 52

Length = 52

>gnl|CDD|238123 cd00202, ZnF_GATA, Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

 Score = 55.5 bits (134), Expect = 3e-11
 Identities = 19/35 (54%), Positives = 26/35 (74%)

Query: 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
          C++C TT TPLWR GP+G  +LCNACG+ ++K   
Sbjct: 2  CSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHGV 36

Length = 54

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	168
smart00401	52	ZnF_GATA zinc finger binding to DNA consensus sequ	99.51
cd00202	54	ZnF_GATA Zinc finger DNA binding domain; binds spe	99.51
PF00320	36	GATA: GATA zinc finger; InterPro: IPR000679 Zinc f	99.44
KOG1601	340	consensus GATA-4/5/6 transcription factors [Transc	98.71
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	98.18
KOG3554	693	consensus Histone deacetylase complex, MTA1 compon	93.61
COG5641	498	GAT1 GATA Zn-finger-containing transcription facto	82.51

>smart00401 ZnF_GATA zinc finger binding to DNA consensus sequence [AT]GATA[AG]

Probab=99.51  E-value=8.1e-15  Score=98.46  Aligned_cols=46  Identities=46%  Similarity=0.988  Sum_probs=39.7

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcc
Q 030971            7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKK   52 (168)
Q Consensus         7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~   52 (168)
                      ....|++|+++.||+||+||.|+..|||+|||+|++.....+|+..
T Consensus         2 ~~~~C~~C~~~~T~~WR~g~~g~~~LCnaCgl~~~k~~~~~rp~~~   47 (52)
T smart00401        2 SGRSCSNCGTTETPLWRRGPSGNKTLCNACGLYYKKHGGLKRPLSL   47 (52)
T ss_pred             CCCCcCCCCCCCCCccccCCCCCCcEeecccHHHHHcCCCCCcccc
Confidence            4689999999999999999999879999999988887665466554

>cd00202 ZnF_GATA Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C

Probab=99.51  E-value=9.1e-15  Score=99.15  Aligned_cols=43  Identities=53%  Similarity=1.146  Sum_probs=36.6

Q ss_pred             ccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCccc
Q 030971           10 YCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKR   53 (168)
Q Consensus        10 ~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~   53 (168)
                      +|+||++++||+||+||+|..+|||||||||++.+ ..+|+...
T Consensus         1 ~C~~C~~~~Tp~WR~g~~~~~~LCNaCgl~~~k~~-~~rp~~~~   43 (54)
T cd00202           1 ACSNCGTTTTPLWRRGPSGGSTLCNACGLYWKKHG-VMRPLSKR   43 (54)
T ss_pred             CCCCCCCCCCcccccCCCCcchHHHHHHHHHHhcC-CCCCcccC
Confidence            59999999999999999887999999999777765 56666553

>PF00320 GATA: GATA zinc finger; InterPro: IPR000679 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.44  E-value=2.4e-14  Score=89.66  Aligned_cols=34  Identities=53%  Similarity=1.279  Sum_probs=26.7

Q ss_pred             cccCCCCCCCcccCCCCCCcccchHHHHHHHhhc
Q 030971           11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKK   44 (168)
Q Consensus        11 C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~   44 (168)
                      |++|++++||+||++|.|+.+|||+|||+|++.+
T Consensus         1 C~~C~tt~t~~WR~~~~g~~~LCn~Cg~~~kk~~   34 (36)
T PF00320_consen    1 CSNCGTTETPQWRRGPNGNRTLCNACGLYYKKYG   34 (36)
T ss_dssp             -TTT--ST-SSEEEETTSEE-EEHHHHHHHHHHS
T ss_pred             CcCCcCCCCchhhcCCCCCCHHHHHHHHHHHHhC
Confidence            8999999999999999997779999999888765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents GATA-type zinc fingers (Znf). A number of transcription factors (including erythroid-specific transcription factor and nitrogen regulatory proteins), specifically bind the DNA sequence (A/T)GATA(A/G) [] in the regulatory regions of genes. They are consequently termed GATA-binding transcription factors. The interactions occur via highly-conserved Znf domains in which the zinc ion is coordinated by 4 cysteine residues [, ]. NMR studies have shown the core of the Znf to comprise 2 irregular anti-parallel beta-sheets and an alpha-helix, followed by a long loop to the C-terminal end of the finger. The N-terminal part, which includes the helix, is similar in structure, but not sequence, to the N-terminal zinc module of the glucocorticoid receptor DNA-binding domain. The helix and the loop connecting the 2 beta-sheets interact with the major groove of the DNA, while the C-terminal tail wraps around into the minor groove. It is this tail that is the essential determinant of specific binding. Interactions between the Znf and DNA are mainly hydrophobic, explaining the preponderance of thymines in the binding site; a large number of interactions with the phosphate backbone have also been observed []. Two GATA zinc fingers are found in the GATA transcription factors. However there are several proteins which only contains a single copy of the domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0043565 sequence-specific DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 3GAT_A 2GAT_A 1GAU_A 1GAT_A 1Y0J_A 1GNF_A 2L6Z_A 2L6Y_A 3DFV_D 3DFX_B ....

>KOG1601 consensus GATA-4/5/6 transcription factors [Transcription]

Probab=98.71  E-value=7.2e-09  Score=81.38  Aligned_cols=44  Identities=61%  Similarity=1.243  Sum_probs=37.6

Q ss_pred             CcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcc
Q 030971            8 LKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKK   52 (168)
Q Consensus         8 ~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~   52 (168)
                      ...|.+|+++.||+||+++.|+.++||+||++|++.. +.+++.+
T Consensus       199 ~~~c~~~~~~~t~~~r~~~~g~~~~cnacgl~~k~~~-~~r~~~~  242 (340)
T KOG1601|consen  199 LRQCSNCGTTKTPLWRRGPEGPKSLCNACGLRYKKGG-VRRPLPE  242 (340)
T ss_pred             CcccCCCCCCCCcceecCCCCCccccccchhhhhhcC-ccccccc
Confidence            5799999999999999999999999999999777665 5555544

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=98.18  E-value=4.5e-07  Score=84.62  Aligned_cols=44  Identities=43%  Similarity=0.929  Sum_probs=39.9

Q ss_pred             cccccCCCCCCCcccCCCC-----CCcccchHHHHHHHhhccccc-cCcccc
Q 030971            9 KYCTDCKTTKTPLWRGGPA-----GPKSLCNACGIRFRKKKRVFE-GLKKRS   54 (168)
Q Consensus         9 ~~C~~Cgtt~Tp~WRrGp~-----G~~~LCNACGL~y~k~~~~~~-~l~~~~   54 (168)
                      .+|.||.|+.||+|||+..     | -+||||||| |.|.|+..+ |+..+.
T Consensus       159 ~vc~Nc~t~stPlwrR~~~~~s~~~-n~lcnaCgl-~~klhg~~r~P~t~ks  208 (498)
T COG5641         159 HVCSNCKTTSTPLWRRASSESSLPG-NNLCNACGL-YLKLHGSPRAPISLKS  208 (498)
T ss_pred             chhccccccCCccccccccccccCC-ccccccccc-cccccCCcCCCccccc
Confidence            4899999999999999998     6 789999999 889999999 887665

>KOG3554 consensus Histone deacetylase complex, MTA1 component [Chromatin structure and dynamics]

Probab=93.61  E-value=0.061  Score=51.27  Aligned_cols=40  Identities=30%  Similarity=0.612  Sum_probs=34.2

Q ss_pred             CCCcccccCCCCCCCcc--cCCCCCCcccchHHHHHHHhhcc
Q 030971            6 SNLKYCTDCKTTKTPLW--RGGPAGPKSLCNACGIRFRKKKR   45 (168)
Q Consensus         6 ~~~~~C~~Cgtt~Tp~W--RrGp~G~~~LCNACGL~y~k~~~   45 (168)
                      ...+.|.+|+|++.-.|  ..+|+-...||-.|=+||+|..+
T Consensus       384 ~~g~~CEsC~ttqs~qWYsWGppnmqcrLCasCWiyWKKygG  425 (693)
T KOG3554|consen  384 QDGRACESCYTTQSLQWYSWGPPNMQCRLCASCWIYWKKYGG  425 (693)
T ss_pred             CCCCcccccccccccceeccCCCCccchhhHHHHHHHHHhcC
Confidence            44789999999999999  55666667899999999999877

>COG5641 GAT1 GATA Zn-finger-containing transcription factor [Transcription]

Probab=82.51  E-value=0.74  Score=43.71  Aligned_cols=44  Identities=32%  Similarity=0.305  Sum_probs=34.2

Q ss_pred             CcccccCCC-CCCCcccCCCCCCcccchHHHHHHHhhccccccCcc
Q 030971            8 LKYCTDCKT-TKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKK   52 (168)
Q Consensus         8 ~~~C~~Cgt-t~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~   52 (168)
                      ...|.+|.+ +.||.||+...---++||+||+ +.+..+..+++..
T Consensus       297 ~~~~s~~~~~~~tp~~~r~~~~~s~~~n~~~~-~~~~~~~~~p~~p  341 (498)
T COG5641         297 DKKRSTLTTSTATPLWRRTSDKSSFSCNASGS-ALKPPGSKRPLLP  341 (498)
T ss_pred             hcCcccccccccCccccccccccccccccccc-ccCCcccccccCC
Confidence            456777877 7788888886554789999999 7777777777765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	168
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	3e-13
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	4e-12
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	1e-10
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	4e-09
3dfx_A	63	Trans-acting T-cell-specific transcription factor	1e-07

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans} Length = 71

 Score = 60.7 bits (147), Expect = 3e-13
 Identities = 17/67 (25%), Positives = 25/67 (37%), Gaps = 2/67 (2%)

Query: 2  NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRK--KKRVFEGLKKRSDKKKD 59
          +  +     C++C  T+T  WR   +     CNAC I  RK  K R    + K   +K  
Sbjct: 2  SHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQRKYNKTRPVTAVNKYQKRKLK 61

Query: 60 KTTNAAA 66
                 
Sbjct: 62 VQETNGV 68

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A Length = 46

 Score = 57.0 bits (138), Expect = 4e-12
 Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 6  SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRV 46
          S  + C +C  T TPLWR    G   LCNACG+  +   + 
Sbjct: 2  SEARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQN 41

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I* Length = 43

 Score = 52.9 bits (127), Expect = 1e-10
 Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)

Query: 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRV 46
          CT+C T  TPLWR  P G + LCNACG+  +    V
Sbjct: 4  CTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVV 38

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A* Length = 66

 Score = 49.7 bits (118), Expect = 4e-09
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 2  NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDKKKDKT 61
          N   +    CT+C T  TPLWR  P G + LCNACG+  +    V     K    KK   
Sbjct: 3  NGEQNGPTTCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGVVRPLSLKTDVIKKRNR 61

Query: 62 TNAAA 66
           +A +
Sbjct: 62 NSANS 66

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* Length = 63

 Score = 45.4 bits (107), Expect = 1e-07
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRV------FEGLKKRSDKKK 58
          C +C+TT T LWR    G   +CNACG+ ++            EG++ R+ K  
Sbjct: 10 CANCQTTTTTLWRRNANG-DPVCNACGLYYKLHNINRPLTMKKEGIQTRNRKMS 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	168
3dfx_A	63	Trans-acting T-cell-specific transcription factor	99.67
4gat_A	66	Nitrogen regulatory protein AREA; DNA binding prot	99.67
1gnf_A	46	Transcription factor GATA-1; zinc finger, transcri	99.66
2vut_I	43	AREA, nitrogen regulatory protein AREA; transcript	99.65
2kae_A	71	GATA-type transcription factor; zinc finger, GATA-	99.61
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.5
4hc9_A	115	Trans-acting T-cell-specific transcription factor;	99.42

>3dfx_A Trans-acting T-cell-specific transcription factor GATA-3; activator, DNA-binding, metal-binding, nucleus; HET: DNA; 2.70A {Mus musculus} PDB: 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A*

Probab=99.67  E-value=3.3e-17  Score=113.81  Aligned_cols=48  Identities=31%  Similarity=0.737  Sum_probs=40.8

Q ss_pred             CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971            5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS   54 (168)
Q Consensus         5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~   54 (168)
                      ......|++|+++.||+||+||+|+ +|||||||+|++ +++.+|+.+.+
T Consensus         4 ~~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNACGl~~~~-~~~~RP~~~~~   51 (63)
T 3dfx_A            4 RRAGTSCANCQTTTTTLWRRNANGD-PVCNACGLYYKL-HNINRPLTMKK   51 (63)
T ss_dssp             CCTTCCCTTTCCSCCSSCCCCTTSC-CCCHHHHHHHHH-HSSCCCGGGCC
T ss_pred             CCCCCcCCCcCCCCCCccCCCCCCC-chhhHHHHHHHH-cCCCCCcCcCC
Confidence            4567899999999999999999996 999999997765 56678887754

>4gat_A Nitrogen regulatory protein AREA; DNA binding protein, transcription factor, zinc binding domain, complex (transcription regulation/DNA); HET: DNA; NMR {Emericella nidulans} SCOP: g.39.1.1 PDB: 5gat_A* 6gat_A* 7gat_A*

Probab=99.67  E-value=2.1e-17  Score=115.62  Aligned_cols=51  Identities=41%  Similarity=0.825  Sum_probs=43.4

Q ss_pred             CCCCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971            2 NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS   54 (168)
Q Consensus         2 ~~~~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~   54 (168)
                      ++.......|++|+|++||+||+||+|+ +|||||||+| +.+++.+|+.+..
T Consensus         3 ~~~~~~~~~C~~C~t~~Tp~WR~gp~G~-~LCNaCGl~~-~~~~~~RP~~~k~   53 (66)
T 4gat_A            3 NGEQNGPTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLFL-KLHGVVRPLSLKT   53 (66)
T ss_dssp             TSCSSSSCCCTTTCCCCCSSCEEETTTE-EECHHHHHHH-HHHCSCCCGGGCC
T ss_pred             CCCCCCCCCCCCCCCCCCCcCCcCCCCC-CccHHHHHHH-HHcCCCCchhhcc
Confidence            3456789999999999999999999995 9999999955 5567788888754

>1gnf_A Transcription factor GATA-1; zinc finger, transcription regulation; NMR {Mus musculus} SCOP: g.39.1.1 PDB: 1y0j_A 2l6y_A 2l6z_A

Probab=99.66  E-value=5.7e-17  Score=106.41  Aligned_cols=44  Identities=41%  Similarity=0.782  Sum_probs=38.5

Q ss_pred             CCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCc
Q 030971            6 SNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLK   51 (168)
Q Consensus         6 ~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~   51 (168)
                      .+...|++|++++||+||+||+|+ +|||||||+ .+.+++.||+.
T Consensus         2 ~~~~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~-~k~~~~~RP~~   45 (46)
T 1gnf_A            2 SEARECVNCGATATPLWRRDRTGH-YLCNACGLY-HKMNGQNRPLI   45 (46)
T ss_dssp             CCSCCCTTTCCCCCSSCBCCTTCC-CBCSHHHHH-HHHTCSCCCCC
T ss_pred             CCCCCCCCcCCCCCCcCccCCCCC-ccchHHHHH-HHHcCCCCCCC
Confidence            467899999999999999999995 999999995 56678888875

>2vut_I AREA, nitrogen regulatory protein AREA; transcription regulation, protein-protein interactions, metal-binding, nitrate assimilation; HET: NAD; 2.3A {Emericella nidulans} SCOP: g.39.1.1 PDB: 2vus_I* 2vuu_I*

Probab=99.65  E-value=5.2e-17  Score=105.19  Aligned_cols=43  Identities=47%  Similarity=0.867  Sum_probs=36.5

Q ss_pred             CcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcc
Q 030971            8 LKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKK   52 (168)
Q Consensus         8 ~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~   52 (168)
                      ++.|++|++++||+||+||+|+ +|||||||+ .+++++.||+.+
T Consensus         1 p~~C~~C~tt~Tp~WR~gp~G~-~LCNaCGl~-~k~~~~~RP~~l   43 (43)
T 2vut_I            1 PTTCTNCFTQTTPLWRRNPEGQ-PLCNACGLF-LKLHGVVRPLSL   43 (43)
T ss_dssp             -CCCSSSCCCCCSCCEECTTSC-EECHHHHHH-HHHHSSCCCCCC
T ss_pred             CCcCCccCCCCCCccccCCCCC-cccHHHHHH-HHHhCCCCCCCC
Confidence            3689999999999999999995 999999995 556777887753

>2kae_A GATA-type transcription factor; zinc finger, GATA-type, DNA; NMR {Caenorhabditis elegans}

Probab=99.61  E-value=1.3e-16  Score=113.17  Aligned_cols=54  Identities=24%  Similarity=0.350  Sum_probs=38.6

Q ss_pred             CCCCCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCccccch
Q 030971            2 NQNDSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRSDK   56 (168)
Q Consensus         2 ~~~~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~~~   56 (168)
                      .+.++....|+||+|++||+||+|+.+..+|||||||+|+ .+++.+|+.+..+.
T Consensus         2 ~~~~~~~~~C~nC~tt~Tp~WRrg~~~~g~LCNACGl~~~-~~~~~RP~~~~~~~   55 (71)
T 2kae_A            2 SHMNKKSFQCSNCSVTETIRWRNIRSKEGIQCNACFIYQR-KYNKTRPVTAVNKY   55 (71)
T ss_dssp             ------CCCCSSSCCSCCSSCCCCSSSSCCCSSHHHHHHH-HHHSCCCTHHHHHH
T ss_pred             CCCCCCCCcCCccCCCCCCccccCCCCCCccchHHHHHHH-HhCCCCCcccchhh
Confidence            3456788999999999999999954443489999999665 55678888876533

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.50  E-value=8.9e-15  Score=111.28  Aligned_cols=48  Identities=33%  Similarity=0.749  Sum_probs=41.2

Q ss_pred             CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971            5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS   54 (168)
Q Consensus         5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~   54 (168)
                      ......|+||+|+.||+||+||+| .+||||||||| +.|++.+|+.+++
T Consensus        56 ~~~~~~C~~C~t~~tp~WRr~~~g-~~lCNaCgl~~-~~~~~~rp~~~~~  103 (115)
T 4hc9_A           56 RRAGTSCANCQTTTTTLWRRNANG-DPVCNACGLYY-KLHNINRPLTMKK  103 (115)
T ss_dssp             CCTTCCCTTTCCSCCSSCEECTTS-CEECHHHHHHH-HHHSSCCCGGGCC
T ss_pred             ccccccCCCcCCCCcceeEECCCC-CCcchHHHHHH-HHhCCCCCccccc
Confidence            355789999999999999999999 89999999955 5567788888765

>4hc9_A Trans-acting T-cell-specific transcription factor; zinc finger, GATA transcription factor, DNA bridging, transc DNA complex; HET: DNA; 1.60A {Homo sapiens} PDB: 4hc7_A* 4hca_A* 3dfx_A* 3dfv_D* 2gat_A* 3gat_A* 1gat_A* 1gau_A* 1gnf_A 1y0j_A 2l6y_A 2l6z_A

Probab=99.42  E-value=5.5e-14  Score=106.93  Aligned_cols=48  Identities=38%  Similarity=0.735  Sum_probs=39.3

Q ss_pred             CCCCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971            5 DSNLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS   54 (168)
Q Consensus         5 ~~~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~   54 (168)
                      +...+.|+||+++.||+||+|++| ++||||||| |.+.+++.+|+.+++
T Consensus         2 ~~~~~~C~~Cg~~~Tp~WRr~~~g-~~lCnaCgl-~~Kl~G~nRP~~KpK   49 (115)
T 4hc9_A            2 SHMGRECVNCGATSTPLWRRDGTG-HYLCNACGL-YHKMNGQNRPLIKPK   49 (115)
T ss_dssp             ----CCCTTTCCSCCSSCEECTTS-CEECHHHHH-HHHHHSSCCCCSSCC
T ss_pred             CCCCCCCCCCCCccCCcceECCCC-CCcCcchhh-hhhhccccccccccc
Confidence            456789999999999999999999 899999999 667778888886643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	168
d1y0ja1	39	g.39.1.1 (A:200-238) Erythroid transcription facto	4e-12
d2vuti1	42	g.39.1.1 (I:671-712) Erythroid transcription facto	8e-11
d3gata_	66	g.39.1.1 (A:) Erythroid transcription factor GATA-	2e-07

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 39

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (134), Expect = 4e-12
 Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 9  KYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
          + C +C  T TPLWR    G   LCNACG+  +   +
Sbjct: 3  RECVNCGATATPLWRRDRTG-HYLCNACGLYHKMNGQ 38

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]} Length = 42

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

 Score = 52.1 bits (125), Expect = 8e-11
 Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 10 YCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
           CT+C T  TPLWR  P G + LCNACG+  +    
Sbjct: 2  TCTNCFTQTTPLWRRNPEG-QPLCNACGLFLKLHGV 36

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 66

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 43.8 bits (103), Expect = 2e-07
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)

Query: 11 CTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKR 45
          C++C+T+ T LWR  P G   +CNACG+ ++  + 
Sbjct: 7  CSNCQTSTTTLWRRSPMG-DPVCNACGLYYKLHQV 40

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	168
d2vuti1	42	Erythroid transcription factor GATA-1 {Emericella	99.71
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	99.64
d3gata_	66	Erythroid transcription factor GATA-1 {Chicken (Ga	99.64
d1neea2	37	Zinc-binding domain of translation initiation fact	84.43

>d2vuti1 g.39.1.1 (I:671-712) Erythroid transcription factor GATA-1 {Emericella nidulans [TaxId: 162425]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Emericella nidulans [TaxId: 162425]

Probab=99.71  E-value=1.5e-18  Score=110.72  Aligned_cols=41  Identities=51%  Similarity=1.023  Sum_probs=37.0

Q ss_pred             ccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcc
Q 030971           10 YCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKK   52 (168)
Q Consensus        10 ~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~   52 (168)
                      .|+||++++||+||+||+| ++||||||| |.|.+++.||+.+
T Consensus         2 ~C~nC~tt~Tp~WRr~~~G-~~lCNACGl-~~k~~g~~RP~sl   42 (42)
T d2vuti1           2 TCTNCFTQTTPLWRRNPEG-QPLCNACGL-FLKLHGVVRPLSL   42 (42)
T ss_dssp             CCSSSCCCCCSCCEECTTS-CEECHHHHH-HHHHHSSCCCCCC
T ss_pred             cCCCCCCCCCccceeCCCC-CCchhhhhH-HHHHcCCCCCCCC
Confidence            6999999999999999999 799999999 5577888888864

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.3e-17  Score=103.74  Aligned_cols=36  Identities=42%  Similarity=0.984  Sum_probs=31.8

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhh
Q 030971            7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKK   43 (168)
Q Consensus         7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~   43 (168)
                      +.+.|.+|++++||+||+||+| .+|||||||+|+..
T Consensus         1 e~r~C~~Cgtt~Tp~WR~gp~G-~~LCNACGl~~r~~   36 (39)
T d1y0ja1           1 EARECVNCGATATPLWRRDRTG-HYLCNACGLYHKMN   36 (39)
T ss_dssp             CCCCCSSSCCCCCSCCEECTTS-CEECSSHHHHHHHS
T ss_pred             CcCCCCCCCCCCCcccccCCCC-CEeeHHhHHHHHHh
Confidence            4678999999999999999999 78999999966543

>d3gata_ g.39.1.1 (A:) Erythroid transcription factor GATA-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=3.2e-17  Score=113.23  Aligned_cols=46  Identities=39%  Similarity=0.865  Sum_probs=39.0

Q ss_pred             CCcccccCCCCCCCcccCCCCCCcccchHHHHHHHhhccccccCcccc
Q 030971            7 NLKYCTDCKTTKTPLWRGGPAGPKSLCNACGIRFRKKKRVFEGLKKRS   54 (168)
Q Consensus         7 ~~~~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL~y~k~~~~~~~l~~~~   54 (168)
                      ....|+||+|++||+||+||+| .+||||||||| +.+++.+|+.+.+
T Consensus         3 ~g~~C~nCgt~~Tp~WRr~~~G-~~lCNACGl~~-~~~~~~RP~~~~~   48 (66)
T d3gata_           3 AGTVCSNCQTSTTTLWRRSPMG-DPVCNACGLYY-KLHQVNRPLTMRK   48 (66)
T ss_dssp             TTCCCTTTCCCCCSSEEECTTS-CEEEHHHHHHH-HHHCSCCCGGGCC
T ss_pred             CCCCCCCCCCCCCcccccCCCC-CcccchhHHHH-HHhCCcCCccccc
Confidence            4568999999999999999999 79999999966 5567788876643

>d1neea2 g.59.1.1 (A:99-135) Zinc-binding domain of translation initiation factor 2 beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Small proteins
fold: Zinc-binding domain of translation initiation factor 2 beta
superfamily: Zinc-binding domain of translation initiation factor 2 beta
family: Zinc-binding domain of translation initiation factor 2 beta
domain: Zinc-binding domain of translation initiation factor 2 beta
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=84.43  E-value=0.11  Score=30.90  Aligned_cols=28  Identities=32%  Similarity=0.756  Sum_probs=21.8

Q ss_pred             ccccCCCCCCCcccCCCCCCcccchHHHH
Q 030971           10 YCTDCKTTKTPLWRGGPAGPKSLCNACGI   38 (168)
Q Consensus        10 ~C~~Cgtt~Tp~WRrGp~G~~~LCNACGL   38 (168)
                      .|..|+.++|-+-+.+--- -.-|+|||-
T Consensus         3 ~C~~C~spDT~l~ke~R~~-~l~C~aCGa   30 (37)
T d1neea2           3 ICHECNRPDTRIIREGRIS-LLKCEACGA   30 (37)
T ss_dssp             HHTCCSSCSSCCEEETTTT-EEECSTTSC
T ss_pred             ECCCCCCCCCEEEEcCCEE-EEEeccCCC
Confidence            6999999999998865333 345999995