Citrus Sinensis ID: 031012


Local Sequence Feature Prediction

Prediction and MethodResult
Residue Number Marker
Protein Sequence ?
Secondary Structure (Consensus) ?
Disordered Region (Consensus) ?
Transmembrane Helix (Consensus) ?
Signal Peptide (Consensus) ?
Coiled Coil (COILS) ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
ccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
MVLFLFFSMQETIERYLK*******************KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL*****************************************************
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MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNxxxxxxxxxxxxxxxxxxxxxKRKLLGEGLASCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN

Function Prediction

Annotation transfered from Closely Related SWISS-PROT Entries ?

Annotation ?Function Description ?Confidence Level ?Reference Protein ?
MADS-box protein SOC1 Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.probableO64645

Prediction of Enzyme Commission Number ?

No EC number assigned to the protein, probably not an enzyme!


Spatial Structural Prediction

Structural Models Based on Templates

Template: 2JEE, chain A
Confidence level:probable
Coverage over the Query: 66-113
View the alignment between query and template
View the model in PyMOL
Template: 3P57, chain A
Confidence level:probable
Coverage over the Query: 1-24
View the alignment between query and template
View the model in PyMOL