Citrus Sinensis ID: 031012

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Secondary Structure (PSIPRED)
ccccccccHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cEEEcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccEEEEEEccccccccccccccccc
Coil and Loop (DISEMBL)
MVLFLFFSMQETIERYLKHTkdtrnkqqpteQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRleekcgmenwqgskeqpenltnddgastsdvetelfigppperrarrlaippqn
Flexible Loop (DISEMBL)
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIaqlkekgkvlEAENTRleekcgmenwqgskeqpenltnddgastsdvetelfigppperrarrlaippqn
Low Complexity Region (SEG)
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTleelqqierqleKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Disordered region (IsUnstruct)
*VLFLFFSMQETIERYL***************************VKKIELLEVSKRKLLGEGLASCTLEEL************************************************************************************************
Disordered Region (DISOPRED)
MVLFLFFSMQETIERYLK*******************KHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRL*****************************************************
Disordered Region (DISEMBL)
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Disordered Region (DISPRO)
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG**********************SDVETELFIGPPPE************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVLFLFFSMQETIERYLKHTKDTRNKQQPTEQNxxxxxxxxxxxxxxxxxxxxxKRKLLGEGLASCTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxCGMENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
O64645	214	MADS-box protein SOC1 OS=	yes	no	0.928	0.724	0.568	7e-39
O82743	219	Agamous-like MADS-box pro	no	no	0.916	0.698	0.413	4e-24
Q9XJ60	230	MADS-box transcription fa	yes	no	0.898	0.652	0.406	8e-23
A2Z9Q7	233	MADS-box transcription fa	N/A	no	0.898	0.643	0.379	1e-20
P0C5B2	233	MADS-box transcription fa	no	no	0.898	0.643	0.367	1e-18
Q38838	221	Agamous-like MADS-box pro	no	no	0.928	0.701	0.406	1e-18
Q0D4T4	249	MADS-box transcription fa	no	no	0.880	0.590	0.326	2e-13
A2YNI2	249	MADS-box transcription fa	N/A	no	0.880	0.590	0.326	2e-13
Q40704	236	MADS-box transcription fa	no	no	0.856	0.605	0.317	5e-13
Q6Q9H6	239	MADS-box transcription fa	no	no	0.766	0.535	0.335	8e-13

>sp|O64645|SOC1_ARATH MADS-box protein SOC1 OS=Arabidopsis thaliana GN=SOC1 PE=1 SV=1

 Score =  159 bits (403), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 91/160 (56%), Positives = 117/160 (73%), Gaps = 5/160 (3%)

Query: 3   LFLFFS--MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLG 60
           L+ F S  MQ+TI+RYL+HTKD  + +  +E+NMQHLK+EAANM+KKIE LE SKRKLLG
Sbjct: 54  LYEFASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLG 113

Query: 61  EGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG- 119
           EG+ +C++EELQQIE+QLEKSV  IRARK QVF EQI QLK+K K L AEN +L EK G 
Sbjct: 114 EGIGTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGS 173

Query: 120 --MENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERR 157
              E W    ++     +++ + +S+VET+LFIG P   R
Sbjct: 174 HESEVWSNKNQESTGRGDEESSPSSEVETQLFIGLPCSSR 213

Transcription activator active in flowering time control. May integrate signals from the photoperiod, vernalization and autonomous floral induction pathways. Can modulates class B and C homeotic genes expression. When associated with AGL24, mediates effect of gibberellins on flowering under short-day conditions, and regulates the expression of LEAFY (LFY), which links floral induction and floral development.
Arabidopsis thaliana (taxid: 3702)

>sp|O82743|AGL19_ARATH Agamous-like MADS-box protein AGL19 OS=Arabidopsis thaliana GN=AGL19 PE=1 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 102/174 (58%), Gaps = 21/174 (12%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
           F   S+  TIERY +  K+  N  +  + N Q  + E + + KKIE LE+SKRKLLGEG+
Sbjct: 57  FSSSSIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGI 115

Query: 64  ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 123
            +C++EELQQ+E QL++S+S IRA+K Q+  E+I +LK + + L  EN  L+EK     W
Sbjct: 116 DACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEK-----W 170

Query: 124 QG----------SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 167
            G          S      +  DD     +VET LFIGPP  R++++   PPQN
Sbjct: 171 LGMGTATIASSQSTLSSSEVNIDDNM---EVETGLFIGPPETRQSKKF--PPQN 219

Probable transcription factor that promotes flowering, especially in response to vernalization by short periods of cold, in an FLC-inpedendent manner.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XJ60|MAD50_ORYSJ MADS-box transcription factor 50 OS=Oryza sativa subsp. japonica GN=MADS50 PE=2 SV=1

 Score =  106 bits (264), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 15/165 (9%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
           F   S Q+TIERY  +TK+     +  +Q+++ +K +A  + KK+E LE  KRKLLGE L
Sbjct: 57  FASASTQKTIERYRTYTKENIG-NKTVQQDIEQVKADADGLAKKLEALETYKRKLLGEKL 115

Query: 64  ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME-- 121
             C++EEL  +E +LE+S+ +IR RK ++  EQ+A+L+EK   L  +N  L EKC  +  
Sbjct: 116 DECSIEELHSLEVKLERSLISIRGRKTKLLEEQVAKLREKEMKLRKDNEELREKCKNQPP 175

Query: 122 -----NWQGSKEQPE---NLTNDDGASTSDVETELFIGPPPERRA 158
                  +   E P+   N TND+     DVETELFIG P   R+
Sbjct: 176 LSAPLTVRAEDENPDRNINTTNDN----MDVETELFIGLPGRSRS 216

Probable transcription factor active in flowering time control. May control internode elongation and promote floral transition phase. May act upstream of the floral regulators MADS1, MADS14, MADS15 and MADS18 in the floral induction pathway.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Z9Q7|MAD56_ORYSI MADS-box transcription factor 56 OS=Oryza sativa subsp. indica GN=MADS56 PE=2 SV=2

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 95/166 (57%), Gaps = 16/166 (9%)

Query: 8   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
           S+Q+TI+RY  +TKD  N  +  +Q++Q +K +   + KK+E L+ S+RK+LGE L  C+
Sbjct: 62  SLQKTIDRYKAYTKDHVN-NKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGCS 120

Query: 68  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL--EAENTR-----LEEKCGM 120
           +EEL+ +E +LEKS+ NIR +K ++   QIA+LKEK + L  + EN R     LE    +
Sbjct: 121 IEELRGLEMKLEKSLHNIRLKKTELLERQIAKLKEKERTLLKDNENLRGKHRNLEAAALV 180

Query: 121 ENWQGSKEQPENLTND--------DGASTSDVETELFIGPPPERRA 158
            N   +   P     D          A   DVET+L+IG P   R+
Sbjct: 181 ANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLPGTERS 226

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|P0C5B2|MAD56_ORYSJ MADS-box transcription factor 56 OS=Oryza sativa subsp. japonica GN=MADS56 PE=2 SV=1

 Score = 92.8 bits (229), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 94/166 (56%), Gaps = 16/166 (9%)

Query: 8   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
           S+Q+TI+RY  +TKD  N  +  +Q++Q +K +   + KK+E L+ S+RK+LGE L   +
Sbjct: 62  SLQKTIDRYKAYTKDHVN-NKTIQQDIQQVKDDTLGLAKKLEALDESRRKILGENLEGFS 120

Query: 68  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVL--EAENTR-----LEEKCGM 120
           +EEL+ +E +LEKS+  IR +K ++  +QIA+LKEK + L  + EN R     LE    +
Sbjct: 121 IEELRGLEMKLEKSLHKIRLKKTELLEQQIAKLKEKERTLLKDNENLRGKHRNLEAAALV 180

Query: 121 ENWQGSKEQPENLTND--------DGASTSDVETELFIGPPPERRA 158
            N   +   P     D          A   DVET+L+IG P   R+
Sbjct: 181 ANHMTTTTAPAAWPRDVPMTSSTAGAADAMDVETDLYIGLPGTERS 226

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q38838|AGL14_ARATH Agamous-like MADS-box protein AGL14 OS=Arabidopsis thaliana GN=AGL14 PE=1 SV=2

 Score = 92.4 bits (228), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 67/165 (40%), Positives = 97/165 (58%), Gaps = 10/165 (6%)

Query: 8   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
           S+ +T+ERY K  +D  +  +  + N Q  K E   + +KIE LE+S RK++GEGL + +
Sbjct: 62  SIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASS 120

Query: 68  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGME-----N 122
           +EELQQ+E QL++S+  IRA+K Q+  E+  +LKEK + L AEN  L EKC M+      
Sbjct: 121 IEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQGRGIIG 180

Query: 123 WQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 167
              S      L  DD  +  +V T+LFIGPP  R  ++   PP N
Sbjct: 181 RISSSSSTSELDIDD--NEMEVVTDLFIGPPETRHFKKF--PPSN 221

Probable transcription factor.

Arabidopsis thaliana (taxid: 3702)

>sp|Q0D4T4|MAD18_ORYSJ MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 85/147 (57%)

Query: 8   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
           SM+  +ERY +++ D R   +P  ++ ++   E   +  K++ L+ S+R+LLGE L + T
Sbjct: 62  SMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT 121

Query: 68  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 127
           ++ELQQ+E QLE S+ +IR++KNQ+  E I++L++K K L+ +N  L++    E  + + 
Sbjct: 122 IKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNA 181

Query: 128 EQPENLTNDDGASTSDVETELFIGPPP 154
               N    +GA+ S         P P
Sbjct: 182 IINTNREEQNGATPSTSSPTPVTAPDP 208

Probable transcription factor that may promote floral transition phase and differentiation program of the vegetative shoot.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2YNI2|MAD18_ORYSI MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 48/147 (32%), Positives = 85/147 (57%)

Query: 8   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
           SM+  +ERY +++ D R   +P  ++ ++   E   +  K++ L+ S+R+LLGE L + T
Sbjct: 62  SMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT 121

Query: 68  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 127
           ++ELQQ+E QLE S+ +IR++KNQ+  E I++L++K K L+ +N  L++    E  + + 
Sbjct: 122 IKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNA 181

Query: 128 EQPENLTNDDGASTSDVETELFIGPPP 154
               N    +GA+ S         P P
Sbjct: 182 IINTNREEQNGATPSTSSPTPVTAPDP 208

Probable transcription factor.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q40704|MADS3_ORYSJ MADS-box transcription factor 3 OS=Oryza sativa subsp. japonica GN=MADS3 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 88/151 (58%), Gaps = 8/151 (5%)

Query: 8   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLE-VSKRKLLGEGLASC 66
           S++ T+ERY K   DT N     E N QH + E++ + ++I  L+  + R ++G+ + + 
Sbjct: 61  SVKSTVERYKKANSDTSNSGTVAEVNAQHYQQESSKLRQQISSLQNANSRTIVGDSINTM 120

Query: 67  TLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGS 126
           +L +L+Q+E +LEK ++ IRARKN++   ++  ++++   L+ +N  L  K  +EN +G 
Sbjct: 121 SLRDLKQVENRLEKGIAKIRARKNELLYAEVEYMQKREVELQNDNMYLRSKV-VENERG- 178

Query: 127 KEQPENLTNDDGASTSDVETELFIGPPPERR 157
            +QP N+     ASTS  E +  +  P + R
Sbjct: 179 -QQPLNMM--GAASTS--EYDHMVNNPYDSR 204

Probable transcription factor involved in the development of floral organs. Acts as C-class protein in association with MADS58. Involved in the control of lodicule number (whorl 2), stamen specification (whorl 3) and floral meristem determinacy (whorl 4), but not in the regulation of carpel morphogenesis. Plays a more predominant role in controlling lodicule development and in specifying stamen identity than MADS58.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Q9H6|MAD34_ORYSJ MADS-box transcription factor 34 OS=Oryza sativa subsp. japonica GN=MADS34 PE=2 SV=2

 Score = 73.2 bits (178), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 44/131 (33%), Positives = 75/131 (57%), Gaps = 3/131 (2%)

Query: 3   LFLFFS---MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLL 59
           L+ F S   M +T+ERY ++   +++   PT   MQ+   E  N+   +E+L+ S+R LL
Sbjct: 54  LYQFSSSSNMLKTLERYQRYIYASQDAAAPTSDEMQNNYQEYVNLKAHVEILQQSQRNLL 113

Query: 60  GEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG 119
           GE LA     EL+Q+E Q+ +++  IR+RK QV  +++  LK K ++L+  N  L+ K  
Sbjct: 114 GEDLAPLATNELEQLESQVVRTLKQIRSRKTQVLLDELCDLKRKEQMLQDANRVLKRKLD 173

Query: 120 MENWQGSKEQP 130
             + + +  QP
Sbjct: 174 EIDVEAAPPQP 184

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
154720967	220	SOC1-like protein 1 [Citrus sinensis]	0.982	0.745	0.981	4e-88
255541406	157	mads box protein, putative [Ricinus comm	0.934	0.993	0.668	4e-49
225453843	218	PREDICTED: MADS-box protein SOC1 [Vitis	0.952	0.729	0.652	2e-48
444230588	215	SOC1 [Prunus salicina]	0.934	0.725	0.675	2e-48
226291977	214	SOC1 [Prunus armeniaca] gi|444230590|gb|	0.928	0.724	0.660	4e-48
346214851	214	SOC1-like protein [Prunus mume]	0.928	0.724	0.666	4e-48
109627813	220	MADS box transcription factor 5 [Populus	0.964	0.731	0.628	5e-48
31295609	220	MADS-box protein PTM5 [Populus tremuloid	0.964	0.731	0.622	1e-47
269116072	218	suppressor of overexpression of CO 1 [Vi	0.952	0.729	0.645	2e-47
224130078	219	MIKC mads-box transcription factor PTM5	0.958	0.730	0.622	3e-47

>gi|154720967|gb|ABS84659.1| SOC1-like protein 1 [Citrus sinensis]

 Score =  328 bits (841), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 161/164 (98%), Positives = 161/164 (98%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
           F   SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL
Sbjct: 57  FASSSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 116

Query: 64  ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 123
           ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW
Sbjct: 117 ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 176

Query: 124 QGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 167
           QGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN
Sbjct: 177 QGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 220

Source: Citrus sinensis

Species: Citrus sinensis

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541406|ref|XP_002511767.1| mads box protein, putative [Ricinus communis] gi|223548947|gb|EEF50436.1| mads box protein, putative [Ricinus communis]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 107/160 (66%), Positives = 127/160 (79%), Gaps = 4/160 (2%)

Query: 9   MQETIERYLKHTKDTRNKQQPTEQNMQH-LKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
           MQ+TIERY +H K+ +  ++PT++NMQH LK EA N++KKIELLEVSKRKLLG+GL SC 
Sbjct: 1   MQDTIERYRRHVKEHQTNKKPTDENMQHQLKSEAGNLMKKIELLEVSKRKLLGQGLGSCN 60

Query: 68  LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 127
           LEELQQIE+QLEKSVS+IRARKNQVF EQI QLKEK K L AEN RL EKCG++   G K
Sbjct: 61  LEELQQIEQQLEKSVSSIRARKNQVFKEQIEQLKEKEKQLAAENARLSEKCGVQALPGLK 120

Query: 128 EQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 167
           EQ EN   ++G+  SDVETELFIG PPE R +R   PP+N
Sbjct: 121 EQEENRPYEEGSPVSDVETELFIG-PPETRTKRF--PPRN 157

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453843|ref|XP_002277773.1| PREDICTED: MADS-box protein SOC1 [Vitis vinifera] gi|95116634|gb|ABF56527.1| MADS-box protein [Vitis vinifera] gi|296089122|emb|CBI38825.3| unnamed protein product [Vitis vinifera]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 105/161 (65%), Positives = 124/161 (77%), Gaps = 2/161 (1%)

Query: 4   FLFFSMQETIERYLKHTKDTR-NKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEG 62
           F   SMQETIERY +HTKD   N  + TE NMQHLKHEAANM KKIELLE+SKRKLLGEG
Sbjct: 57  FSSSSMQETIERYQRHTKDVHTNNYKTTEHNMQHLKHEAANMAKKIELLEISKRKLLGEG 116

Query: 63  LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN 122
           L SC++EELQQIE+QLE+SVS+IRARKNQVF EQI QLKEK K L AEN  L EKCG++ 
Sbjct: 117 LGSCSIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQP 176

Query: 123 WQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAI 163
           +Q   ++ E L + + +  SDV T+LFIG  PE RA+RL +
Sbjct: 177 YQAPNQENETLPSAERSQNSDVSTDLFIG-LPEGRAKRLLL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|444230588|gb|AGD88523.1| SOC1 [Prunus salicina]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 108/160 (67%), Positives = 125/160 (78%), Gaps = 4/160 (2%)

Query: 4   FLFFSMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGE 61
           F   SMQ TIERY KH KD  T NK   T+QNMQHLK E+++M+K+IELLEVSKRKLLGE
Sbjct: 57  FASSSMQTTIERYQKHAKDNHTNNKPVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGE 116

Query: 62  GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-M 120
           GL SCT+EELQ+IE+QLE+SVSN+RARK QVF EQI QLKEKGK L AEN RL EKCG +
Sbjct: 117 GLGSCTIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLKEKGKALAAENERLIEKCGRI 176

Query: 121 ENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARR 160
           +  Q S EQ ENL   + + +SDVETELFIG  PERR +R
Sbjct: 177 QPRQASNEQRENLAYIESSPSSDVETELFIG-LPERRMKR 215

Source: Prunus salicina

Species: Prunus salicina

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226291977|gb|ACO40488.1| SOC1 [Prunus armeniaca] gi|444230590|gb|AGD88524.1| SOC1 [Prunus armeniaca]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 105/159 (66%), Positives = 124/159 (77%), Gaps = 4/159 (2%)

Query: 4   FLFFSMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGE 61
           F   SMQ TIERY KHTKD  T NK   T+QNMQHLK E+++M+K+IE LE+SKRKLLGE
Sbjct: 57  FASSSMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIEFLEISKRKLLGE 116

Query: 62  GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-M 120
           GL SC++EELQ+IE+QLE+SVSN+RARK QVF EQI QL+EKGK L AEN RL EKCG +
Sbjct: 117 GLGSCSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENERLIEKCGRI 176

Query: 121 ENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRAR 159
           +  Q S EQ ENL   + + +SDVETELFIG  PERR R
Sbjct: 177 QPRQASNEQRENLAYTESSPSSDVETELFIG-LPERRKR 214

Source: Prunus armeniaca

Species: Prunus armeniaca

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346214851|gb|AEO20229.1| SOC1-like protein [Prunus mume]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 106/159 (66%), Positives = 125/159 (78%), Gaps = 4/159 (2%)

Query: 4   FLFFSMQETIERYLKHTKD--TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGE 61
           F   SMQ TIERY KHTKD  T NK   T+QNMQHLK E+++M+K+IELLEVSKRKLLGE
Sbjct: 57  FASSSMQTTIERYQKHTKDNLTNNKSVSTDQNMQHLKQESSSMMKQIELLEVSKRKLLGE 116

Query: 62  GLASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-M 120
           GL SC++EELQ+IE+QLE+SVSN+RARK QVF EQI QL+EKGK L AEN +L EKCG +
Sbjct: 117 GLGSCSIEELQEIEQQLERSVSNVRARKTQVFKEQIEQLREKGKALAAENEKLIEKCGRI 176

Query: 121 ENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERRAR 159
           +  Q S EQ ENL   + + +SDVETELFIG  PERR R
Sbjct: 177 QPRQASNEQRENLAFTESSPSSDVETELFIG-LPERRKR 214

Source: Prunus mume

Species: Prunus mume

Genus: Prunus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|109627813|gb|ABG34340.1| MADS box transcription factor 5 [Populus tomentosa]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 105/167 (62%), Positives = 124/167 (74%), Gaps = 6/167 (3%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
           F   SMQETIERY +H K+    +QP EQNM  LK EAA+M+KKIE LEVSKRKLLGE L
Sbjct: 57  FASSSMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECL 116

Query: 64  ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 123
            SCT+EELQQIE QLE+SVS IRARKNQVF EQI  LK+K K+L AENTRL ++CG ++W
Sbjct: 117 GSCTIEELQQIEHQLERSVSTIRARKNQVFKEQIELLKQKEKLLAAENTRLSDECGAQSW 176

Query: 124 QGSKEQPENLTND---DGASTSDVETELFIGPPPERRARRLAIPPQN 167
             S EQ ++L  +   + +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 177 PVSWEQRDDLPREEQRESSSISDVETELFIGPPETRTKR---IPPRN 220

Source: Populus tomentosa

Species: Populus tomentosa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|31295609|gb|AAP46287.1|AF377868_1 MADS-box protein PTM5 [Populus tremuloides]

 Score =  194 bits (492), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 124/167 (74%), Gaps = 6/167 (3%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
           F   SMQETIERY +H K+    +QP EQNM  LK EAA+M+KKIE LEVSKRKLLGE L
Sbjct: 57  FASSSMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECL 116

Query: 64  ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 123
            SCT+EELQQIE+QLE+SVS IRARKNQVF EQI  LK+K K+L AEN RL ++CG ++W
Sbjct: 117 GSCTIEELQQIEQQLERSVSTIRARKNQVFKEQIELLKQKEKLLAAENARLSDECGAQSW 176

Query: 124 QGSKEQPENLTND---DGASTSDVETELFIGPPPERRARRLAIPPQN 167
             S EQ ++L  +   + +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 177 PVSWEQRDDLPREEQRESSSISDVETELFIGPPETRTKR---IPPRN 220

Source: Populus tremuloides

Species: Populus tremuloides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|269116072|gb|ACZ26527.1| suppressor of overexpression of CO 1 [Vitis vinifera]

 Score =  193 bits (491), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 123/161 (76%), Gaps = 2/161 (1%)

Query: 4   FLFFSMQETIERYLKHTKDTR-NKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEG 62
           F   SMQETIERY +HTKD   N  + TE NMQ LKHEAANM KKIELLE+SKRKLLGEG
Sbjct: 57  FSSSSMQETIERYQRHTKDVHTNNYKTTEHNMQQLKHEAANMAKKIELLEISKRKLLGEG 116

Query: 63  LASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN 122
           L SC++EELQQIE+QLE+SVS+IRARKNQVF EQI QLKEK K L AEN  L EKCG++ 
Sbjct: 117 LGSCSIEELQQIEQQLERSVSSIRARKNQVFKEQIEQLKEKEKALAAENAMLCEKCGVQP 176

Query: 123 WQGSKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAI 163
           +Q   ++ E L + + +  SDV T+LFIG  PE RA+RL +
Sbjct: 177 YQAPNQENETLPSAERSQNSDVSTDLFIG-LPEGRAKRLLL 216

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130078|ref|XP_002320747.1| MIKC mads-box transcription factor PTM5 [Populus trichocarpa] gi|222861520|gb|EEE99062.1| MIKC mads-box transcription factor PTM5 [Populus trichocarpa]

 Score =  192 bits (488), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/167 (62%), Positives = 124/167 (74%), Gaps = 7/167 (4%)

Query: 4   FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
           F   SMQETIERY +H K+    +QP EQNM  LK EAA+M+KKIE LEVSKRKLLGE L
Sbjct: 57  FASTSMQETIERYRRHVKENNTNKQPVEQNMLQLKEEAASMIKKIEHLEVSKRKLLGECL 116

Query: 64  ASCTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENW 123
            SCT+EELQQIE+QLE+SVS IRARKNQVF EQI  L++K K+L AEN RL ++CG ++W
Sbjct: 117 GSCTVEELQQIEQQLERSVSTIRARKNQVFKEQIELLRQKEKLLAAENARLSDECGAQSW 176

Query: 124 QGSKEQPENLTNDD---GASTSDVETELFIGPPPERRARRLAIPPQN 167
             S+EQ  +L  +D    +S SDVETELFIGPP  R  R   IPP+N
Sbjct: 177 PVSREQ-RDLPREDLRESSSISDVETELFIGPPETRTKR---IPPRN 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2005522	214	AGL20 "AT2G45660" [Arabidopsis	0.922	0.719	0.503	2.8e-34
UNIPROTKB|Q9ATE9	216	FBP20 "MADS-box transcription	0.904	0.699	0.535	9.8e-32
UNIPROTKB|Q9ATE3	215	FBP28 "MADS-box transcription	0.916	0.711	0.5	4.9e-30
TAIR|locus:505006709	210	AGL42 "AGAMOUS-like 42" [Arabi	0.892	0.709	0.432	3.6e-25
TAIR|locus:2127213	219	AGL19 "AGAMOUS-like 19" [Arabi	0.940	0.716	0.376	3.9e-21
TAIR|locus:2137070	221	AGL14 "AGAMOUS-like 14" [Arabi	0.922	0.696	0.361	4e-19
TAIR|locus:2165386	211	AGL72 "AGAMOUS-like 72" [Arabi	0.880	0.696	0.333	7.7e-16
UNIPROTKB|Q0D4T4	249	MADS18 "MADS-box transcription	0.880	0.590	0.272	5.6e-11
UNIPROTKB|Q40882	228	fbp11 "Fbp11 protein" [Petunia	0.682	0.5	0.304	5.3e-10
UNIPROTKB|D2T2F8	249	grcd4 "GRCD4 protein" [Gerbera	0.772	0.518	0.305	2.5e-09

TAIR|locus:2005522 AGL20 "AT2G45660" [Arabidopsis thaliana (taxid:3702)]

 Score = 372 (136.0 bits), Expect = 2.8e-34, P = 2.8e-34
 Identities = 79/157 (50%), Positives = 103/157 (65%)

Query:     4 FLFFSMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGL 63
             F   +MQ+TI+RYL+HTKD  + +  +E+NMQHLK+EAANM+KKIE LE SKRKLLGEG+
Sbjct:    57 FASSNMQDTIDRYLRHTKDRVSTKPVSEENMQHLKYEAANMMKKIEQLEASKRKLLGEGI 116

Query:    64 ASCTXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM--- 120
              +C+            KSV  IRARK QVF EQI QLK+K K L AEN +L EK G    
Sbjct:   117 GTCSIEELQQIEQQLEKSVKCIRARKTQVFKEQIEQLKQKEKALAAENEKLSEKWGSHES 176

Query:   121 ENWQGSKEQPENLTNDDGASTSDVETELFIGPPPERR 157
             E W    ++     +++ + +S+VET+LFIG P   R
Sbjct:   177 EVWSNKNQESTGRGDEESSPSSEVETQLFIGLPCSSR 213

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0009911 "positive regulation of flower development" evidence=IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=IPI

GO:0009409 "response to cold" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IEP

GO:0000060 "protein import into nucleus, translocation" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0009739 "response to gibberellin stimulus" evidence=IEP

GO:0010077 "maintenance of inflorescence meristem identity" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

UNIPROTKB|Q9ATE9 FBP20 "MADS-box transcription factor FBP20" [Petunia x hybrida (taxid:4102)]

 Score = 348 (127.6 bits), Expect = 9.8e-32, P = 9.8e-32
 Identities = 84/157 (53%), Positives = 97/157 (61%)

Query:     8 SMQETIERYLKHTKD-TRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 66
             SMQE IERY  HTKD  + + Q  EQN+QH   E A ++KKIE LE SKRKLLGEGL SC
Sbjct:    61 SMQEIIERYKGHTKDKVQTENQAGEQNLQH---ETAGLMKKIEFLETSKRKLLGEGLGSC 117

Query:    67 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQG 125
             T            +SVS IRARK QVF EQI +L EK K L AEN  L EK G ++  Q 
Sbjct:   118 TLEELQKIEKQLERSVSIIRARKMQVFKEQIEKLNEKEKALAAENAMLREKFGGLQQRQA 177

Query:   126 SKEQPEN-LTNDDGASTSDVETELFIGPPPERRARRL 161
             S  + E  +   +G+  SDVETELFIGPP  R   RL
Sbjct:   178 SSGEKEGEVVCTEGSDKSDVETELFIGPPECRIRHRL 214

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATE3 FBP28 "MADS-box transcription factor FBP28" [Petunia x hybrida (taxid:4102)]

 Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
 Identities = 81/162 (50%), Positives = 105/162 (64%)

Query:     8 SMQETIERYLKHTKDTRNKQQPTEQN-MQHLKHEAANMVKKIELLEVSKRKLLGEGLASC 66
             SMQE IERY +H++D + ++   EQN MQ+LK +AA+++KKIE+LE SKRKLLGE L SC
Sbjct:    61 SMQEIIERYRRHSEDVQGEKPAVEQNNMQNLKLDAASLMKKIEILETSKRKLLGEDLGSC 120

Query:    67 TXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCG-MENWQG 125
             +            +S+S IRARK +VF EQI +LK   KVL  EN  L EKCG +E  Q 
Sbjct:   121 SLEELQQIEKQLERSISTIRARKMEVFREQIERLKGNVKVLATENAMLWEKCGDLEMQQT 180

Query:   126 SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 167
             S  +  ++   +G+  SDVETELFIG P E R +R   P QN
Sbjct:   181 SGGEDLSI---EGSEKSDVETELFIGLP-ECRTKR---PLQN 215

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:505006709 AGL42 "AGAMOUS-like 42" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 67/155 (43%), Positives = 93/155 (60%)

Query:     3 LFLFFS--MQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLG 60
             L+ F S  MQ+TIERY K+TKD       ++ ++Q LK EA++M+ KIELLE  KRKLLG
Sbjct:    54 LYEFSSSDMQKTIERYRKYTKDHETSNHDSQIHLQQLKQEASHMITKIELLEFHKRKLLG 113

Query:    61 EGLASCTXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM 120
             +G+ASC+            +S+  +R RK Q+F EQ+ +LK K K L  EN +L +K  +
Sbjct:   114 QGIASCSLEELQEIDSQLQRSLGKVRERKAQLFKEQLEKLKAKEKQLLEENVKLHQKNVI 173

Query:   121 ENWQGSK--EQPENLTNDDGASTSDVETELFIGPP 153
               W+GS   +Q E     D     +VET+LFIG P
Sbjct:   174 NPWRGSSTDQQQEKYKVID--LNLEVETDLFIGLP 206

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0009838 "abscission" evidence=IMP

GO:0010150 "leaf senescence" evidence=IMP

GO:0080187 "floral organ senescence" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2127213 AGL19 "AGAMOUS-like 19" [Arabidopsis thaliana (taxid:3702)]

 Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
 Identities = 61/162 (37%), Positives = 92/162 (56%)

Query:     8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
             S+  TIERY +  K+  N  +  + N Q  + E + + KKIE LE+SKRKLLGEG+ +C+
Sbjct:    61 SIAATIERYQRRIKEIGNNHKRND-NSQQARDETSGLTKKIEQLEISKRKLLGEGIDACS 119

Query:    68 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK-CGMENWQGS 126
                         +S+S IRA+K Q+  E+I +LK + + L  EN  L+EK  GM     +
Sbjct:   120 IEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAEERNLVKENKDLKEKWLGMGTATIA 179

Query:   127 KEQPENLTNDDGASTS-DVETELFIGPPPERRARRLAIPPQN 167
               Q    +++     + +VET LFIGPP  R++++   PPQN
Sbjct:   180 SSQSTLSSSEVNIDDNMEVETGLFIGPPETRQSKKF--PPQN 219

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA;IMP

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

TAIR|locus:2137070 AGL14 "AGAMOUS-like 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 60/166 (36%), Positives = 88/166 (53%)

Query:     8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
             S+ +T+ERY K  +D  +  +  + N Q  K E   + +KIE LE+S RK++GEGL + +
Sbjct:    62 SIPKTVERYQKRIQDLGSNHKRND-NSQQSKDETYGLARKIEHLEISTRKMMGEGLDASS 120

Query:    68 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQG-- 125
                         +S+  IRA+K Q+  E+  +LKEK + L AEN  L EKC M+  +G  
Sbjct:   121 IEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKERNLIAENKMLMEKCEMQG-RGII 179

Query:   126 ----SKEQPENLTNDDGASTSDVETELFIGPPPERRARRLAIPPQN 167
                 S      L  DD  +  +V T+LFIGPP  R  ++   PP N
Sbjct:   180 GRISSSSSTSELDIDD--NEMEVVTDLFIGPPETRHFKKF--PPSN 221

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:2165386 AGL72 "AGAMOUS-like 72" [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 50/150 (33%), Positives = 81/150 (54%)

Query:     4 FLFFSMQETIERYLKHTKDTRNKQ-QPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEG 62
             F    ++ TI+RY ++ ++    +  P EQ +Q LK E   MVKKIE+LEV  RK++G+ 
Sbjct:    57 FASSDIRNTIKRYAEYKREYFVAETHPIEQYVQGLKKEMVTMVKKIEVLEVHNRKMMGQS 116

Query:    63 LASCTXXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLE-EKCGME 121
             L SC+            KS+  +R RK +++ +++ +LK K + L+ E  RL  +K    
Sbjct:   117 LDSCSVKELSEIATQIEKSLHMVRLRKAKLYEDELQKLKAKERELKDERVRLSLKKTIYT 176

Query:   122 NWQGSKEQPENLTNDDGASTSDVETELFIG 151
             +     E+P  + +       DVET+LFIG
Sbjct:   177 HLCQVGERPMGMPSGS-KEKEDVETDLFIG 205

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0009909 "regulation of flower development" evidence=IMP

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q0D4T4 MADS18 "MADS-box transcription factor 18" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 153 (58.9 bits), Expect = 5.6e-11, P = 5.6e-11
 Identities = 40/147 (27%), Positives = 74/147 (50%)

Query:     8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
             SM+  +ERY +++ D R   +P  ++ ++   E   +  K++ L+ S+R+LLGE L + T
Sbjct:    62 SMEGILERYQRYSFDERAVLEPNTEDQENWGDEYGILKSKLDALQKSQRQLLGEQLDTLT 121

Query:    68 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 127
                          S+ +IR++KNQ+  E I++L++K K L+ +N  L++    E  + + 
Sbjct:   122 IKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLMETEKEKNNA 181

Query:   128 EQPENLTNDDGASTSDVETELFIGPPP 154
                 N    +GA+ S         P P
Sbjct:   182 IINTNREEQNGATPSTSSPTPVTAPDP 208

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q40882 fbp11 "Fbp11 protein" [Petunia x hybrida (taxid:4102)]

 Score = 143 (55.4 bits), Expect = 5.3e-10, P = 5.3e-10
 Identities = 35/115 (30%), Positives = 62/115 (53%)

Query:     8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
             +++ TIERY K T +T N     E N Q  + E+  + ++I+LL+ + R L+GEGL++  
Sbjct:    61 NIKGTIERYKKATAETSNACTTQELNAQFYQQESKKLRQQIQLLQNTNRHLVGEGLSALN 120

Query:    68 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMEN 122
                         + ++ IR++K+++   +   L+++   LE ENT L  K   EN
Sbjct:   121 VRELKQLENRLERGITRIRSKKHEMILAETENLQKREIQLEQENTFLRSKIA-EN 174

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|D2T2F8 grcd4 "GRCD4 protein" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 139 (54.0 bits), Expect = 2.5e-09, P = 2.5e-09
 Identities = 41/134 (30%), Positives = 65/134 (48%)

Query:     8 SMQETIERYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCT 67
             SM +T+E+Y   +  +    QP E   Q+  HE   +  ++E+L+ S+R LLGE LA   
Sbjct:    62 SMVKTLEKYHSCSYGSLKASQP-ENESQYNYHEYLRLKARVEVLQRSQRNLLGEDLAPLN 120

Query:    68 XXXXXXXXXXXXKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGMENWQGSK 127
                          S+  IR+ K Q   +Q+A L+ K +VL   N  L +K  +E  + ++
Sbjct:   121 TKELEQLEHQLEMSLRKIRSTKTQSMLDQLADLQRKEQVLAETNKALRKK--LE--ESAQ 176

Query:   128 EQPENLTNDDGAST 141
             E P     + GA T
Sbjct:   177 EYPVRQMWEGGAQT 190

GO:0005515 "protein binding" evidence=IPI

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O64645	SOC1_ARATH	No assigned EC number	0.5687	0.9281	0.7242	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	MADS8	SubName- Full=MADS-box protein (Chromosome chr15 scaffold_37, whole genome shotgun sequence); (218 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	TFL1	SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (173 aa)							•		0.483
	PHYA	SubName- Full=Putative uncharacterized protein (Chromosome chr14 scaffold_27, whole genome shot [...] (1124 aa)							•		0.483
	FT	SubName- Full=Flowering locus T-like protein (FT-like protein) (Putative uncharacterized protei [...] (174 aa)							•		0.483
	PHYB	SubName- Full=Chromosome chr5 scaffold_64, whole genome shotgun sequence; (1130 aa)							•		0.481
	GSVIVG00015048001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (359 aa)							•		0.481
	GSVIVG00038466001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (762 aa)							•		0.480

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
pfam01486	100	pfam01486, K-box, K-box region	4e-22
TIGR04211	198	TIGR04211, SH3_and_anchor, SH3 domain protein	0.002

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 84.5 bits (210), Expect = 4e-22
 Identities = 38/87 (43%), Positives = 60/87 (68%)

Query: 31  EQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKN 90
           E   ++L+ EAA + K+ E L+  +R LLGE L S +L+ELQQ+E+QLE  + +IR+RKN
Sbjct: 11  ESKYENLQQEAAKLKKQNENLQREQRHLLGEDLGSLSLKELQQLEQQLENGLKHIRSRKN 70

Query: 91  QVFNEQIAQLKEKGKVLEAENTRLEEK 117
           ++   QI +L++K + L+ EN  L +K
Sbjct: 71  ELLLNQIEELQKKERELQEENRNLRQK 97

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|234501 TIGR04211, SH3_and_anchor, SH3 domain protein

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 30/111 (27%), Positives = 56/111 (50%), Gaps = 15/111 (13%)

Query: 15  RYLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQI 74
           RYL  T   R +    +Q +  L+ E A + +++  L+   ++L  E      L  L+  
Sbjct: 56  RYLSDTPSARERLPELQQELAELQEELAELQEQLAELQQENQELKQE------LSTLEAE 109

Query: 75  ERQLEKSVSNIR---------ARKNQVFNEQIAQLKEKGKVLEAENTRLEE 116
             +L+K ++ I+           +N+   E++A+LK++ + LEAEN RL+E
Sbjct: 110 LERLQKELARIKQLSANAIELDEENRELREELAELKQENEALEAENERLQE 160

Members of this protein family have a signal peptide, a strongly conserved SH3 domain, a variable region, and then a C-terminal hydrophobic transmembrane alpha helix region. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.92
KOG0014	195	consensus MADS box transcription factor [Transcrip	98.3
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	94.92
PRK15422	79	septal ring assembly protein ZapB; Provisional	90.51
COG3074	79	Uncharacterized protein conserved in bacteria [Fun	87.42
PF06698	59	DUF1192: Protein of unknown function (DUF1192); In	85.48
PF01166	59	TSC22: TSC-22/dip/bun family; InterPro: IPR000580	85.06
cd07429	108	Cby_like Chibby, a nuclear inhibitor of Wnt/beta-c	84.99
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	83.68
PRK10884	206	SH3 domain-containing protein; Provisional	82.18
PRK13169	110	DNA replication intiation control protein YabA; Re	81.23
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.85

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.92  E-value=1.8e-24  Score=155.90  Aligned_cols=99  Identities=39%  Similarity=0.559  Sum_probs=92.6

Q ss_pred             HHhcccccccCCCCcHHhHHHHHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012           16 YLKHTKDTRNKQQPTEQNMQHLKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARKNQVFNE   95 (167)
Q Consensus        16 Y~~~~~~~~~~~~~~~~~~q~~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~   95 (167)
                      |++.++...|.     ...+.|+.++++|+.+++.|+..+|+|+|+||++||++||+.||++|+.||.+||+||+++|.+
T Consensus         1 Y~~~~~~~~~~-----~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~   75 (100)
T PF01486_consen    1 YQKQSGTDLWD-----SQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQLLME   75 (100)
T ss_pred             CCcccCCCCCH-----HHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            66677666654     4678999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhh
Q 031012           96 QIAQLKEKGKVLEAENTRLEEKCG  119 (167)
Q Consensus        96 qi~~Lk~Ke~~L~eeN~~L~~k~~  119 (167)
                      +|+.|++|++.+.++|..|+.++.
T Consensus        76 ~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   76 QIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999885

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=98.30  E-value=3.4e-07  Score=72.16  Aligned_cols=109  Identities=33%  Similarity=0.390  Sum_probs=80.7

Q ss_pred             CcccCCCC--HHHHHHHHHhcccccccCCCCc-HHh--------------H-----HHHHHHHHHHHHHHHHHHHH---h
Q 031012            1 MVLFLFFS--MQETIERYLKHTKDTRNKQQPT-EQN--------------M-----QHLKHEAANMVKKIELLEVS---K   55 (167)
Q Consensus         1 L~efsSsS--M~~ileRY~~~~~~~~~~~~~~-~~~--------------~-----q~~~~e~~~L~~~ie~L~~~---~   55 (167)
                      +|+|++++  |..+++||.............. ...              .     ..+......++...+.+...   .
T Consensus        54 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  133 (195)
T KOG0014|consen   54 LYEFGSSDESVDAVVDRFLNLTEPSRKKKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQ  133 (195)
T ss_pred             ccccCCcchhHHHHHHHHHhhhhhhhcccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHH
Confidence            68999986  9999999987655432211100 000              0     12455667777777777644   8


Q ss_pred             hHhhCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 031012           56 RKLLGEGLASCTL-EELQQIERQLEKSVSNIRARKNQVFNEQIA-QLKEKGKVLEA  109 (167)
Q Consensus        56 R~l~GEdL~~Ls~-~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~-~Lk~Ke~~L~e  109 (167)
                      ++++|+++.++++ .+|..++.+++.++..+|..+...+..++. .++.++..+..
T Consensus       134 ~~~~~~~l~~l~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (195)
T KOG0014|consen  134 RKLTGEDLQSLSSLNELNSLESQLESSLHNSRSSKSKPLSDSNFQVLQEKEKSLEA  189 (195)
T ss_pred             HHHhccccccCCHHHHhcchhhHHHHhhcCCCCCCCcCCcchhhhhhcccchhccc
Confidence            9999999999999 999999999999999999999999988876 55555544443

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=94.92  E-value=0.27  Score=33.42  Aligned_cols=47  Identities=34%  Similarity=0.495  Sum_probs=32.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012           66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEK  117 (167)
Q Consensus        66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k  117 (167)
                      +|++-|.+||..+..++..|..=|     .+++.|+.+...|.++|..|...
T Consensus         1 M~~E~l~~LE~ki~~aveti~~Lq-----~e~eeLke~n~~L~~e~~~L~~e   47 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIALLQ-----MENEELKEKNNELKEENEELKEE   47 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHhHHHHHHHHHHH
Confidence            478899999999999999987544     45666777655444444444443

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PRK15422 septal ring assembly protein ZapB; Provisional

Probab=90.51  E-value=2.1  Score=29.58  Aligned_cols=40  Identities=28%  Similarity=0.538  Sum_probs=31.0

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012           66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAE  110 (167)
Q Consensus        66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~ee  110 (167)
                      +|++=|.+||..+..|+.-|-     ++.-+|++||.|-..|.++
T Consensus         1 MS~EvleqLE~KIqqAvdtI~-----LLqmEieELKekn~~L~~e   40 (79)
T PRK15422          1 MSLEVFEKLEAKVQQAIDTIT-----LLQMEIEELKEKNNSLSQE   40 (79)
T ss_pred             CcHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHH
Confidence            578889999999999999884     5666777888775555554

>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=87.42  E-value=5.2  Score=27.15  Aligned_cols=42  Identities=26%  Similarity=0.497  Sum_probs=31.2

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012           66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENT  112 (167)
Q Consensus        66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~  112 (167)
                      +|++=|..||..+..|+.-|     .|+.-+|++||.|...|..|-.
T Consensus         1 MSlEv~ekLE~KiqqAvdTI-----~LLQmEieELKEknn~l~~e~q   42 (79)
T COG3074           1 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQ   42 (79)
T ss_pred             CchHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhhHhHHHHH
Confidence            57888999999999999887     4666677788777665444433

>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length

Probab=85.48  E-value=1.4  Score=28.90  Aligned_cols=31  Identities=29%  Similarity=0.437  Sum_probs=23.5

Q ss_pred             HhhCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 031012           57 KLLGEGLASCTLEELQQIERQLEKSVSNIRA   87 (167)
Q Consensus        57 ~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~   87 (167)
                      +..|+||+.||++||..==..|+.=+.++++
T Consensus        12 ~~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~   42 (59)
T PF06698_consen   12 HEIGEDLSLLSVEELEERIALLEAEIARLEA   42 (59)
T ss_pred             cccCCCchhcCHHHHHHHHHHHHHHHHHHHH
Confidence            6789999999999998755556555555554

The function of this family is unknown.

>PF01166 TSC22: TSC-22/dip/bun family; InterPro: IPR000580 Several eukaryotic proteins are evolutionary related and are thought to be involved in transcriptional regulation

Probab=85.06  E-value=2.4  Score=27.64  Aligned_cols=30  Identities=40%  Similarity=0.584  Sum_probs=25.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012           90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG  119 (167)
Q Consensus        90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~  119 (167)
                      .+.+.++|.+|..+...|+.||..|+..+.
T Consensus        16 VevLK~~I~eL~~~n~~Le~EN~~Lk~~~~   45 (59)
T PF01166_consen   16 VEVLKEQIAELEERNSQLEEENNLLKQNAS   45 (59)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            467888999999999999999999988665

These proteins are highly similar in a region of about 50 residues that include a conserved leucine-zipper domain most probably involved in homo- or hetero-dimerisation. Proteins containing this signature include: Vertebrate protein TSC-22 [], a transcriptional regulator which seems to act on C-type natriuretic peptide (CNP) promoter. Mammalian protein DIP (DSIP-immunoreactive peptide) [], a protein whose function is not yet known. Drosophila protein bunched [] (gene bun) (also known as shortsighted), a probable transcription factor required for peripheral nervous system morphogenesis, eye development and oogenesis. Caenorhabditis elegans hypothetical protein T18D3.7. ; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1DIP_B.

>cd07429 Cby_like Chibby, a nuclear inhibitor of Wnt/beta-catenin mediated transcription, and similar proteins

Probab=84.99  E-value=1.5  Score=32.06  Aligned_cols=25  Identities=36%  Similarity=0.461  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012           95 EQIAQLKEKGKVLEAENTRLEEKCG  119 (167)
Q Consensus        95 ~qi~~Lk~Ke~~L~eeN~~L~~k~~  119 (167)
                      .++..+|+|.+.|+|||+.|+.|++
T Consensus        72 ~e~~rlkkk~~~LeEENNlLklKie   96 (108)
T cd07429          72 REVLRLKKKNQQLEEENNLLKLKIE   96 (108)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999986

Chibby(Cby) is a well-conserved nuclear protein that functions as part of the Wnt/beta-catenin signaling pathway. Specifically, Cby binds directly to beta-catenin by interacting with its central region, which harbors armadillo repeats. Cby-beta-catenin interactions may also involve 14-3-3 proteins. By competing with other binding partners of beta-catenin, the Tcf/Lef transcription factors, Cby inhibits transcriptional activation. Cby has been shown to play a role in adipocyte differentiation. The C-terminal region of Cby appears to contain an alpha-helical coiled-coil motif.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=83.68  E-value=9.5  Score=29.37  Aligned_cols=50  Identities=28%  Similarity=0.355  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 031012           39 HEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIRARK   89 (167)
Q Consensus        39 ~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR~rK   89 (167)
                      ..+..|..+++.|+..+..+.+ +-...+.+|...++.....+....|.||
T Consensus       116 ~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRK  165 (169)
T PF07106_consen  116 EEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRK  165 (169)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444443 2233444444444444444444444443

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>PRK10884 SH3 domain-containing protein; Provisional

Probab=82.18  E-value=20  Score=29.01  Aligned_cols=78  Identities=12%  Similarity=0.147  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHhhCCCCCCCCHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012           37 LKHEAANMVKKIELLEVSKRKLLGEGLASCTLEELQQIERQLEKSVSNIR--ARKNQVFNEQIAQLKEKGKVLEAENTRL  114 (167)
Q Consensus        37 ~~~e~~~L~~~ie~L~~~~R~l~GEdL~~Ls~~EL~~LE~qLe~sL~~IR--~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L  114 (167)
                      ...-+..+.++++.++..+..+.++ .    -.....+.+.+..+=..|-  ....+-+.+++..++.+...|..+|..+
T Consensus        91 ~~~rlp~le~el~~l~~~l~~~~~~-~----~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~  165 (206)
T PRK10884         91 LRTRVPDLENQVKTLTDKLNNIDNT-W----NQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDK  165 (206)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhH-H----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4445566666666666665555443 1    1444445554444433333  3334455667777777777777777777


Q ss_pred             HHHhh
Q 031012          115 EEKCG  119 (167)
Q Consensus       115 ~~k~~  119 (167)
                      ...+.
T Consensus       166 ~~~~~  170 (206)
T PRK10884        166 QRTII  170 (206)
T ss_pred             HHHHH
Confidence            76554

>PRK13169 DNA replication intiation control protein YabA; Reviewed

Probab=81.23  E-value=13  Score=27.30  Aligned_cols=48  Identities=29%  Similarity=0.445  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012           68 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM  120 (167)
Q Consensus        68 ~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~  120 (167)
                      ++-|.+||+++..-+..|..-|.+     +..+-.....|.-||..|+.++..
T Consensus         7 fd~l~~le~~l~~l~~el~~LK~~-----~~el~EEN~~L~iEN~~Lr~~l~~   54 (110)
T PRK13169          7 FDALDDLEQNLGVLLKELGALKKQ-----LAELLEENTALRLENDKLRERLEE   54 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            466888999998888777766644     345666677778888888888875

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.85  E-value=13  Score=27.00  Aligned_cols=48  Identities=29%  Similarity=0.441  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 031012           68 LEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTRLEEKCGM  120 (167)
Q Consensus        68 ~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~~  120 (167)
                      ++.|.+||++|..-+..|..-|.+     +..|-..-..|.-||..|+..+..
T Consensus         7 ~~~l~~le~~l~~l~~~~~~LK~~-----~~~l~EEN~~L~~EN~~Lr~~l~~   54 (107)
T PF06156_consen    7 FDRLDQLEQQLGQLLEELEELKKQ-----LQELLEENARLRIENEHLRERLEE   54 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788888888877777665543     345666666677777777777764

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	96.41
2jee_A	81	YIIU; FTSZ, septum, coiled-coil, cell division, ce	93.2
1dip_A	78	Delta-sleep-inducing peptide immunoreactive peptid	81.42

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=96.41  E-value=0.00089  Score=46.49  Aligned_cols=24  Identities=8%  Similarity=0.229  Sum_probs=20.6

Q ss_pred             CcccCCCCHHHHHHHHHhcccccc
Q 031012            1 MVLFLFFSMQETIERYLKHTKDTR   24 (167)
Q Consensus         1 L~efsSsSM~~ileRY~~~~~~~~   24 (167)
                      ||+|+|++|.+||+||+++.....
T Consensus        53 ~~~f~s~~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A           53 LFQYASTDMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             EEEEESSCHHHHHHHHHHCCSCCC
T ss_pred             EEEeCCCCHHHHHHHHHhcCcccc
Confidence            589999999999999999876443

>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}

Probab=93.20  E-value=0.62  Score=31.42  Aligned_cols=43  Identities=26%  Similarity=0.488  Sum_probs=32.4

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 031012           66 CTLEELQQIERQLEKSVSNIRARKNQVFNEQIAQLKEKGKVLEAENTR  113 (167)
Q Consensus        66 Ls~~EL~~LE~qLe~sL~~IR~rK~~ll~~qi~~Lk~Ke~~L~eeN~~  113 (167)
                      +|++=|.+||..+..++..|     .++..+|++||.|...|.++|..
T Consensus         3 MS~ElleqLE~KIq~avdtI-----~lLqmEieELKekN~~L~~e~~e   45 (81)
T 2jee_A            3 MSLEVFEKLEAKVQQAIDTI-----TLLQMEIEELKEKNNSLSQEVQN   45 (81)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH
Confidence            68889999999999999977     45666677777776665444444

>1dip_A Delta-sleep-inducing peptide immunoreactive peptide; structure, leucine zipper, PIG, acetylation; NMR {Sus scrofa} SCOP: h.1.12.1

Probab=81.42  E-value=2.5  Score=27.96  Aligned_cols=30  Identities=40%  Similarity=0.484  Sum_probs=26.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 031012           90 NQVFNEQIAQLKEKGKVLEAENTRLEEKCG  119 (167)
Q Consensus        90 ~~ll~~qi~~Lk~Ke~~L~eeN~~L~~k~~  119 (167)
                      .+++.++|.+|..|...|+.||..|+.-..
T Consensus        17 VevLKe~I~EL~e~~~qLE~EN~~Lk~~as   46 (78)
T 1dip_A           17 VEILKEQIRELVEKNSQLERENTLLKTLAS   46 (78)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            357889999999999999999999988664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	89.62
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	84.36

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=89.62  E-value=0.025  Score=37.02  Aligned_cols=20  Identities=5%  Similarity=0.009  Sum_probs=17.3

Q ss_pred             CcccCCCCHHHHHHHHHhcc
Q 031012            1 MVLFLFFSMQETIERYLKHT   20 (167)
Q Consensus         1 L~efsSsSM~~ileRY~~~~   20 (167)
                      +|+|+||+|..||+||....
T Consensus        55 ~~~f~sp~v~~vl~r~~~~~   74 (85)
T d1mnma_          55 VYTFSTPKFEPIVTQQEGRN   74 (85)
T ss_dssp             EEEEECTTTTHHHHSHHHHH
T ss_pred             EEeccCCCHHHHHHHHhccc
Confidence            48999999999999998543

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.36  E-value=0.057  Score=35.17  Aligned_cols=18  Identities=17%  Similarity=0.052  Sum_probs=16.2

Q ss_pred             CcccCCCCHHHHHHHHHh
Q 031012            1 MVLFLFFSMQETIERYLK   18 (167)
Q Consensus         1 L~efsSsSM~~ileRY~~   18 (167)
                      +|+|+|+++..+|+||+.
T Consensus        55 ~~~f~s~~~~~vi~~~~~   72 (84)
T d1srsa_          55 VYTFATRKLQPMITSETG   72 (84)
T ss_dssp             EEEEECGGGHHHHSSHHH
T ss_pred             EEEeeCCCHHHHHHHHHH
Confidence            589999999999999974