Citrus Sinensis ID: 031017

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKVIKIYM
Secondary Structure (PSIPRED)
cccccccccccccEEEcccccccccHHHHHHHHcccccHHHHHHHHHHHccccccccccccccccEEEccccccEEcccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
ccccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHcccEEEEccccccccccHHHccccEEEEEHHHHHHHHHHcccccccccHHHHHcccEEEEEEEcccccccccccccccccccccHHHcccccccccccccccccccHHHHHccccccccccEEEEcc
Coil and Loop (DISEMBL)
mkiqcdvcekapatvICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLsnklppcdicqeKAAFIFCVEDralfckdcdepihspgslsanHQRFLATGIRVALSsscskdaerniseppnqqasqtsvkmptqqssgisspwavddflqfsdfessgkvIKIYM
Flexible Loop (DISEMBL)
mkiqcdvcekAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNIseppnqqasqtsvKMPTQQSSGISSPWAVDDFLqfsdfessgkvikiym
Low Complexity Region (SEG)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKVIKIYM
Disordered region (IsUnstruct)
***QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIH*******NHQRFLATGIRVA***************************************WAVDDFLQFSDF***********
Disordered Region (DISOPRED)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG************************************************FLQFSDFESSG**IKIYM
Disordered Region (DISEMBL)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVAL***********************************SSPWAVDDFLQFSDFESSGKVIKIYM
Disordered Region (DISPRO)
*KIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALS************************************PWAVDDFLQFSDFESSGKVIKIYM
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISEPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGKVIKIYM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q9SID1	238	Salt tolerance-like prote	yes	no	0.946	0.663	0.709	2e-59
Q96288	248	Salt tolerance protein OS	no	no	0.964	0.649	0.702	6e-57
Q9SYM2	299	Probable salt tolerance-l	no	no	0.646	0.361	0.601	2e-33
Q9LQZ7	331	Probable salt tolerance-l	no	no	0.670	0.338	0.547	5e-29
Q0IGM7	242	B-box zinc finger protein	no	no	0.652	0.450	0.536	5e-27
O50055	355	Zinc finger protein CONST	no	no	0.664	0.312	0.385	2e-15
Q9SK53	294	Zinc finger protein CONST	no	no	0.497	0.282	0.423	1e-14
Q940T9	362	Zinc finger protein CONST	no	no	0.586	0.270	0.392	7e-14
Q96502	347	Zinc finger protein CONST	no	no	0.497	0.239	0.423	3e-13
Q39057	373	Zinc finger protein CONST	no	no	0.646	0.289	0.325	1e-12

>sp|Q9SID1|STH_ARATH Salt tolerance-like protein OS=Arabidopsis thaliana GN=STH PE=1 SV=2

 Score =  228 bits (580), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 115/162 (70%), Positives = 129/162 (79%), Gaps = 4/162 (2%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPAT+ICCADEAALCAKCDVEVHAANKLASKHQRL L  LS K PPCDIC
Sbjct: 1   MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNIS 119
            EKAAFIFCVEDRAL C+DCDE  H+P + SANHQRFLATGIRVALSS SC+++ E+N  
Sbjct: 61  LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query: 120 EPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
           +P NQQ+     K PTQQ +  S  WA D+F  +SD + S K
Sbjct: 121 DPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNK 159

Arabidopsis thaliana (taxid: 3702)

>sp|Q96288|STO_ARATH Salt tolerance protein OS=Arabidopsis thaliana GN=STO PE=1 SV=1

 Score =  219 bits (558), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 118/168 (70%), Positives = 131/168 (77%), Gaps = 7/168 (4%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALC +CD+E+HAANKLASKHQRL L  LS K P CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNIS 119
           QEKAAFIFCVEDRAL C+DCDE IH   S SANHQRFLATGI+VAL+S+ CSK+ E+N  
Sbjct: 61  QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query: 120 EPPN--QQASQTSVKMPTQQSSGISS----PWAVDDFLQFSDFESSGK 161
           EP N  Q+A+Q   K  +QQ    SS    PWAVDDF  FSD ES+ K
Sbjct: 121 EPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDK 168

May act as a transcription factor in the salt-stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SYM2|STHY_ARATH Probable salt tolerance-like protein At1g78600 OS=Arabidopsis thaliana GN=At1g78600 PE=1 SV=2

 Score =  141 bits (355), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 80/108 (74%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQC+VCE A ATV+CCADEAALC  CD ++HAANKLA KHQR+ L   ++ +P CDIC
Sbjct: 1   MKIQCNVCEAAEATVLCCADEAALCWACDEKIHAANKLAGKHQRVPLSASASSIPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS 108
           QE + F FC++DRAL C+ CD  IH+     + HQRFL TGI+V L S
Sbjct: 61  QEASGFFFCLQDRALLCRKCDVAIHTVNPHVSAHQRFLLTGIKVGLES 108

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQZ7|STHX_ARATH Probable salt tolerance-like protein At1g75540 OS=Arabidopsis thaliana GN=At1g75540 PE=1 SV=1

 Score =  127 bits (318), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/115 (54%), Positives = 79/115 (68%), Gaps = 3/115 (2%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-C 57
           MKI+CDVC+K  A+V C ADEA+LC  CD +VH ANKLASKH R  LL    SN   P C
Sbjct: 1   MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query: 58  DICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSK 112
           DICQ+K A +FC +DRA+ CKDCD  IH+    +  H RFL TG++++ +SS  K
Sbjct: 61  DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYK 115

Arabidopsis thaliana (taxid: 3702)

>sp|Q0IGM7|BBX20_ARATH B-box zinc finger protein 20 OS=Arabidopsis thaliana GN=BBX20 PE=1 SV=1

 Score =  120 bits (300), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 59/110 (53%), Positives = 72/110 (65%), Gaps = 1/110 (0%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNK-LPPCDI 59
           MKI C VC+K  A+V CCADEAALC  CD  VH ANKLA KH R  L   + K  P CDI
Sbjct: 1   MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query: 60  CQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS 109
           C E+ A +FC EDRA+ C++CD PIH     +  H RFL TG++++ S S
Sbjct: 61  CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPS 110

Arabidopsis thaliana (taxid: 3702)

>sp|O50055|COL1_ARATH Zinc finger protein CONSTANS-LIKE 1 OS=Arabidopsis thaliana GN=COL1 PE=1 SV=1

 Score = 81.6 bits (200), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 47/122 (38%), Positives = 64/122 (52%), Gaps = 11/122 (9%)

Query: 5   CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
           CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   
Sbjct: 12  CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query: 65  AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI-RVALSSSCSKDA-ERNISEPP 122
           A  FC  D A  C  CD  IHS   L+  HQR     I   + SS+ +  + E  +++P 
Sbjct: 63  AAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPE 122

Query: 123 NQ 124
           N+
Sbjct: 123 NR 124

Putative transcription factor that may be involved in the light input to the circadian clock but does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SK53|COL3_ARATH Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana GN=COL3 PE=1 SV=1

 Score = 79.3 bits (194), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 52/92 (56%), Gaps = 9/92 (9%)

Query: 5  CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
          CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C++  
Sbjct: 8  CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query: 65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
          A + C  D A  C  CD  IHS   LS  H+R
Sbjct: 59 AHVTCKADAAALCVTCDRDIHSANPLSRRHER 90

Arabidopsis thaliana (taxid: 3702)

>sp|Q940T9|COL4_ARATH Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana GN=COL4 PE=2 SV=2

 Score = 76.6 bits (187), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 57/107 (53%), Gaps = 9/107 (8%)

Query: 5   CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
           CD C+ A A + C  D A LC  CD +VHAANKLAS+H R+ +         C++C++  
Sbjct: 6   CDSCKSATAALYCRPDAAFLCLSCDSKVHAANKLASRHARVWM---------CEVCEQAP 56

Query: 65  AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCS 111
           A + C  D A  C  CD  IHS   L+  H+R   T    ++SS  S
Sbjct: 57  AHVTCKADAAALCVTCDRDIHSANPLARRHERVPVTPFYDSVSSDGS 103

Arabidopsis thaliana (taxid: 3702)

>sp|Q96502|COL2_ARATH Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis thaliana GN=COL2 PE=1 SV=1

 Score = 74.3 bits (181), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/92 (42%), Positives = 47/92 (51%), Gaps = 9/92 (9%)

Query: 5  CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
          CD C  A  TV C AD A LC  CD  VHAAN++AS+H+R+ +         C  C+   
Sbjct: 16 CDTCRSAACTVYCEADSAYLCTTCDARVHAANRVASRHERVRV---------CQSCESAP 66

Query: 65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
          A   C  D A  C  CD  IHS   L+  HQR
Sbjct: 67 AAFLCKADAASLCTACDAEIHSANPLARRHQR 98

Putative transcription factor. Does not affect flowering time.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39057|CONS_ARATH Zinc finger protein CONSTANS OS=Arabidopsis thaliana GN=CO PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 60/120 (50%), Gaps = 12/120 (10%)

Query: 5   CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
           CD C     TV C AD A LC  CD +VH+AN++AS+H+R+ +         C+ C+   
Sbjct: 20  CDTCRSNACTVYCHADSAYLCMSCDAQVHSANRVASRHKRVRV---------CESCERAP 70

Query: 65  AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR---FLATGIRVALSSSCSKDAERNISEP 121
           A   C  D A  C  CD  +HS   L+  HQR      +G   +  ++    +E+ +++P
Sbjct: 71  AAFLCEADDASLCTACDSEVHSANPLARRHQRVPILPISGNSFSSMTTTHHQSEKTMTDP 130

Putative transcription factor that acts in the long day flowering pathway and may mediate between the circadian clock and the control of flowering. Plays a role in the regulation of flowering time by acting on 'SUPPRESSOR OF OVEREXPRESSION OF CO1', 'TERMINAL FLOWER 1' and 'FLOWERING LOCUS T'. Also regulates P5CS2 and ACS10 (involved in proline and ethylene biosynthesis, respectively).

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
224133194	238	predicted protein [Populus trichocarpa]	0.952	0.668	0.861	7e-75
224093108	237	predicted protein [Populus trichocarpa]	0.976	0.687	0.836	2e-72
118486140	235	unknown [Populus trichocarpa]	0.946	0.672	0.849	9e-72
225433924	239	PREDICTED: salt tolerance-like protein [	0.964	0.673	0.822	3e-71
255587107	238	Salt-tolerance protein, putative [Ricinu	0.952	0.668	0.817	8e-71
307136260	237	salt-tolerance protein [Cucumis melo sub	0.964	0.679	0.807	1e-69
449454578	237	PREDICTED: salt tolerance protein-like [	0.964	0.679	0.801	3e-69
168480805	237	putative transcription factor [Cucumis s	0.964	0.679	0.795	1e-68
358249332	240	uncharacterized protein LOC100797515 [Gl	0.964	0.670	0.788	3e-68
302398757	239	COL domain class transcription factor [M	0.964	0.673	0.807	5e-68

>gi|224133194|ref|XP_002327983.1| predicted protein [Populus trichocarpa] gi|222837392|gb|EEE75771.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (728), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 137/159 (86%), Positives = 146/159 (91%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCD+EVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVALSSSCSKD + N S 
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLATGIRVALSSSCSKDTQTNSSG 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESS 159
           PPNQ A QT +K+P QQ+S  ++ WAVDD LQFS+FESS
Sbjct: 121 PPNQSAQQTPMKIPAQQTSSFATSWAVDDLLQFSEFESS 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093108|ref|XP_002309796.1| predicted protein [Populus trichocarpa] gi|222852699|gb|EEE90246.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (706), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 138/165 (83%), Positives = 147/165 (89%), Gaps = 2/165 (1%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALC KCD+EVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCEKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVALSSSCSKD +++  E
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLATGIRVALSSSCSKDTQKSSLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDF-ESSGKVIK 164
           PPNQ   QTS K+P Q +S   S WAVDDFLQFSD  ES+ KVI+
Sbjct: 121 PPNQSEQQTS-KLPWQHASSFGSSWAVDDFLQFSDIEESTDKVIR 164

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486140|gb|ABK94913.1| unknown [Populus trichocarpa]

 Score =  274 bits (701), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 135/159 (84%), Positives = 142/159 (89%), Gaps = 1/159 (0%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALC KCD+EVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCEKCDIEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVALSSSCSKD +++  E
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGSLSANHQRFLATGIRVALSSSCSKDTQKSSLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESS 159
           PPNQ   QTS K+P Q +S   S WAVDDFLQFSD E S
Sbjct: 121 PPNQSEQQTS-KLPWQHASSFGSSWAVDDFLQFSDIEES 158

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433924|ref|XP_002268700.1| PREDICTED: salt tolerance-like protein [Vitis vinifera] gi|297743809|emb|CBI36692.3| unnamed protein product [Vitis vinifera]

 Score =  272 bits (696), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 134/163 (82%), Positives = 147/163 (90%), Gaps = 2/163 (1%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCE+APATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC
Sbjct: 1   MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS G+L+ANHQRFLATGIRVALSS C+K+ +++ SE
Sbjct: 61  QEKAAFIFCVEDRALFCRDCDEPIHSAGNLAANHQRFLATGIRVALSSKCAKETDKSSSE 120

Query: 121 -PPNQQASQTSVKMPTQQSSGI-SSPWAVDDFLQFSDFESSGK 161
            PPNQ + Q ++KMP QQ+    SS WAVDD LQFSDFESS K
Sbjct: 121 PPPNQNSQQITMKMPPQQAPNFTSSSWAVDDLLQFSDFESSDK 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587107|ref|XP_002534139.1| Salt-tolerance protein, putative [Ricinus communis] gi|223525797|gb|EEF28243.1| Salt-tolerance protein, putative [Ricinus communis]

 Score =  271 bits (692), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 141/159 (88%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCE+APATVICCADEAALCAKCD+EVHAANKLASKHQRLLL CLSNKLPPCDIC
Sbjct: 1   MKIQCDVCERAPATVICCADEAALCAKCDIEVHAANKLASKHQRLLLNCLSNKLPPCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           QEKAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA+ SSC+KD +++  E
Sbjct: 61  QEKAAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVAVGSSCTKDTKKSCLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESS 159
           PPNQ   QTS K+  QQ S  +S WAVD+ LQ SDFESS
Sbjct: 121 PPNQSEQQTSTKLSVQQPSSFNSQWAVDELLQLSDFESS 159

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136260|gb|ADN34088.1| salt-tolerance protein [Cucumis melo subsp. melo]

 Score =  267 bits (682), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 140/161 (86%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS KLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+KAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA+SSSC+KD ++   E
Sbjct: 61  QDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKDVDKVKME 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
           PPN +  Q   K+P+QQ    +S WAVDDFL FSD ESS K
Sbjct: 121 PPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDK 161

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454578|ref|XP_004145031.1| PREDICTED: salt tolerance protein-like [Cucumis sativus] gi|449471891|ref|XP_004153437.1| PREDICTED: salt tolerance protein-like [Cucumis sativus] gi|449520978|ref|XP_004167509.1| PREDICTED: salt tolerance protein-like [Cucumis sativus]

 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 129/161 (80%), Positives = 140/161 (86%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS KLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+KAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA+SSSC+K+ ++   E
Sbjct: 61  QDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGIRVAMSSSCTKEVDKVKME 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
           PPN +  Q   K+P+QQ    +S WAVDDFL FSD ESS K
Sbjct: 121 PPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDK 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|168480805|gb|ACA24496.1| putative transcription factor [Cucumis sativus]

 Score =  264 bits (674), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 128/161 (79%), Positives = 139/161 (86%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS KLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSTKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+KAAFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATG RVA+SSSC+K+ ++   E
Sbjct: 61  QDKAAFIFCVEDRALFCQDCDEPIHSSGSLSANHQRFLATGTRVAMSSSCTKEVDKVKME 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
           PPN +  Q   K+P+QQ    +S WAVDDFL FSD ESS K
Sbjct: 121 PPNPKNPQVPAKVPSQQVPNFTSSWAVDDFLHFSDLESSDK 161

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358249332|ref|NP_001240034.1| uncharacterized protein LOC100797515 [Glycine max] gi|255640046|gb|ACU20314.1| unknown [Glycine max]

 Score =  263 bits (671), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 127/161 (78%), Positives = 140/161 (86%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCE+APATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLS+KLP CDIC
Sbjct: 1   MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSSKLPTCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+K AFIFCVEDRALFC+DCDEPIHS GSLSANHQRFLATGIRVA SS+C+KD E++ SE
Sbjct: 61  QDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNEKSHSE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
           PPN+ A Q S K+P QQ    +S WAVDD L+ + FES  K
Sbjct: 121 PPNRSAQQVSAKIPPQQVPSFTSSWAVDDLLELTGFESPEK 161

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302398757|gb|ADL36673.1| COL domain class transcription factor [Malus x domestica]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 130/161 (80%), Positives = 139/161 (86%)

Query: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
           MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQ LSNKLP CDIC
Sbjct: 1   MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQSLSNKLPKCDIC 60

Query: 61  QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNISE 120
           Q+K AFIFCVEDRALFC+DCDEPIHS  SLSANHQRFLATGIRV L+SS +K+AE +  E
Sbjct: 61  QDKIAFIFCVEDRALFCQDCDEPIHSANSLSANHQRFLATGIRVPLASSSTKEAETSSLE 120

Query: 121 PPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
           P NQ A + S K+   Q+SGISSPW VDD LQ SDFESS K
Sbjct: 121 PSNQGAQKISTKVSAPQASGISSPWGVDDLLQLSDFESSDK 161

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2061330	238	STH "salt tolerance homologue"	0.946	0.663	0.709	1.2e-58
TAIR|locus:2198841	248	STO "SALT TOLERANCE" [Arabidop	0.964	0.649	0.702	4e-58
TAIR|locus:2005624	331	BBX21 "B-box domain protein 21	0.862	0.435	0.473	3.3e-31
TAIR|locus:2122759	162	bbx23 "B-box domain protein 23	0.802	0.827	0.462	1.8e-30
TAIR|locus:2120207	242	BZS1 "BZS1" [Arabidopsis thali	0.712	0.491	0.508	5e-28
TAIR|locus:2050130	172	BBX18 "B-box domain protein 18	0.604	0.587	0.480	6.3e-21
TAIR|locus:2143221	355	COL1 "CONSTANS-like 1" [Arabid	0.886	0.416	0.343	5.7e-20
TAIR|locus:2047246	294	COL3 "CONSTANS-like 3" [Arabid	0.622	0.353	0.380	6.7e-17
UNIPROTKB|Q9FRZ7	342	Hd1 "Hd1 protein" [Oryza sativ	0.497	0.242	0.423	7.7e-16
UNIPROTKB|Q9FRZ6	259	Q9FRZ6 "Hd1" [Oryza sativa (ta	0.497	0.320	0.413	2.6e-15

TAIR|locus:2061330 STH "salt tolerance homologue" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 115/162 (70%), Positives = 129/162 (79%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
             MKIQCDVCEKAPAT+ICCADEAALCAKCDVEVHAANKLASKHQRL L  LS K PPCDIC
Sbjct:     1 MKIQCDVCEKAPATLICCADEAALCAKCDVEVHAANKLASKHQRLFLDSLSTKFPPCDIC 60

Query:    61 QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSS-SCSKDAERNIS 119
              EKAAFIFCVEDRAL C+DCDE  H+P + SANHQRFLATGIRVALSS SC+++ E+N  
Sbjct:    61 LEKAAFIFCVEDRALLCRDCDEATHAPNTRSANHQRFLATGIRVALSSTSCNQEVEKNHF 120

Query:   120 EPPNQQASQTSVKMPTQQSSGISSPWAVDDFLQFSDFESSGK 161
             +P NQQ+     K PTQQ +  S  WA D+F  +SD + S K
Sbjct:   121 DPSNQQSLS---KPPTQQPAAPSPLWATDEFFSYSDLDCSNK 159

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0019904 "protein domain specific binding" evidence=NAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010224 "response to UV-B" evidence=RCA

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2198841 STO "SALT TOLERANCE" [Arabidopsis thaliana (taxid:3702)]

 Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
 Identities = 118/168 (70%), Positives = 131/168 (77%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
             MKIQCDVCEKAPATVICCADEAALC +CD+E+HAANKLASKHQRL L  LS K P CDIC
Sbjct:     1 MKIQCDVCEKAPATVICCADEAALCPQCDIEIHAANKLASKHQRLHLNSLSTKFPRCDIC 60

Query:    61 QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSS-CSKDAERNIS 119
             QEKAAFIFCVEDRAL C+DCDE IH   S SANHQRFLATGI+VAL+S+ CSK+ E+N  
Sbjct:    61 QEKAAFIFCVEDRALLCRDCDESIHVANSRSANHQRFLATGIKVALTSTICSKEIEKNQP 120

Query:   120 EPPN--QQASQTSVKMPTQQ----SSGISSPWAVDDFLQFSDFESSGK 161
             EP N  Q+A+Q   K  +QQ    SS    PWAVDDF  FSD ES+ K
Sbjct:   121 EPSNNQQKANQIPAKSTSQQQQQPSSATPLPWAVDDFFHFSDIESTDK 168

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005515 "protein binding" evidence=IPI

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009640 "photomorphogenesis" evidence=IGI

GO:0080167 "response to karrikin" evidence=IEP

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0009651 "response to salt stress" evidence=IGI;RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0003677 "DNA binding" evidence=ISS

TAIR|locus:2005624 BBX21 "B-box domain protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
 Identities = 71/150 (47%), Positives = 93/150 (62%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQR--LLLQCLSNKLPP-C 57
             MKI+CDVC+K  A+V C ADEA+LC  CD +VH ANKLASKH R  LL    SN   P C
Sbjct:     1 MKIRCDVCDKEEASVFCTADEASLCGGCDHQVHHANKLASKHLRFSLLYPSSSNTSSPLC 60

Query:    58 DICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 117
             DICQ+K A +FC +DRA+ CKDCD  IH+    +  H RFL TG++++ +SS  K   ++
Sbjct:    61 DICQDKKALLFCQQDRAILCKDCDSSIHAANEHTKKHDRFLLTGVKLSATSSVYKPTSKS 120

Query:   118 ISEPP-NQQASQ--TSVKMPTQQSSGISSP 144
              S    NQ  S   +S+  P      +S+P
Sbjct:   121 SSSSSSNQDFSVPGSSISNPPPLKKPLSAP 150

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0009641 "shade avoidance" evidence=IGI;IMP

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IMP

TAIR|locus:2122759 bbx23 "B-box domain protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
 Identities = 67/145 (46%), Positives = 93/145 (64%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQ------CLSNKL 54
             MKIQC+VCEKA A V+CC+DEA LC  CD++VH ANKL  +H R+ LQ        ++  
Sbjct:     1 MKIQCEVCEKAEAEVLCCSDEAVLCKPCDIKVHEANKLFQRHHRVALQKDAASATTASGA 60

Query:    55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDA 114
             P CDICQE+  + FC+EDRA+ C DCDE IH+  S    HQRFL +G++V+   S ++++
Sbjct:    61 PLCDICQERKGYFFCLEDRAMLCNDCDEAIHTCNS----HQRFLLSGVQVS-DQSLTENS 115

Query:   115 ERNISEPPNQQASQTSVKMPTQQSS 139
             E + S        Q+ V + +Q SS
Sbjct:   116 ECSTSFSSETYQIQSKVSLNSQYSS 140

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2120207 BZS1 "BZS1" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 61/120 (50%), Positives = 75/120 (62%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNK-LPPCDI 59
             MKI C VC+K  A+V CCADEAALC  CD  VH ANKLA KH R  L   + K  P CDI
Sbjct:     1 MKIWCAVCDKEEASVFCCADEAALCNGCDRHVHFANKLAGKHLRFSLTSPTFKDAPLCDI 60

Query:    60 CQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERNIS 119
             C E+ A +FC EDRA+ C++CD PIH     +  H RFL TG++++ S S    A  + S
Sbjct:    61 CGERRALLFCQEDRAILCRECDIPIHQANEHTKKHNRFLLTGVKISASPSAYPRASNSNS 120

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010200 "response to chitin" evidence=IEP

GO:0080167 "response to karrikin" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

TAIR|locus:2050130 BBX18 "B-box domain protein 18" [Arabidopsis thaliana (taxid:3702)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 50/104 (48%), Positives = 61/104 (58%)

Query:     1 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDIC 60
             M+I CD CE A A V C ADEAALC  CD +VH  NKLAS+H R+ L   SN  P CDIC
Sbjct:     1 MRILCDACESAAAIVFCAADEAALCCSCDEKVHKCNKLASRHLRVGLADPSNA-PSCDIC 59

Query:    61 QEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRV 104
             +   AF +C  D +  C  CD  +H  G  +  H+RFL    R+
Sbjct:    60 ENAPAFFYCEIDGSSLCLQCDMVVHVGGKRT--HRRFLLLRQRI 101

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

TAIR|locus:2143221 COL1 "CONSTANS-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 59/172 (34%), Positives = 87/172 (50%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C  A  TV C AD A LC+ CD +VHAAN+LAS+H+R+ +         C  C+   
Sbjct:    12 CDTCRSAACTVYCRADSAYLCSSCDAQVHAANRLASRHERVRV---------CQSCERAP 62

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGI-RVALSSSCSKDA-ERNISEPP 122
             A  FC  D A  C  CD  IHS   L+  HQR     I   + SS+ +  + E  +++P 
Sbjct:    63 AAFFCKADAASLCTTCDSEIHSANPLARRHQRVPILPISEYSYSSTATNHSCETTVTDPE 122

Query:   123 NQ-----------QASQTSVKMPTQ-QSSGISSPWAV-DDFLQFSDFESSGK 161
             N+           +A   S  +P   ++SG ++ +++ D+FL   D+ SS K
Sbjct:   123 NRLVLGQEEEDEDEAEAASWLLPNSGKNSGNNNGFSIGDEFLNLVDYSSSDK 174

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0007623 "circadian rhythm" evidence=IMP

GO:0009909 "regulation of flower development" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0042802 "identical protein binding" evidence=IPI

GO:0006281 "DNA repair" evidence=RCA

GO:0010100 "negative regulation of photomorphogenesis" evidence=RCA

GO:0048608 "reproductive structure development" evidence=RCA

TAIR|locus:2047246 COL3 "CONSTANS-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 43/113 (38%), Positives = 59/113 (52%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C+   AT+ C AD A LC  CD ++H ANKLAS+H+R+ L         C++C++  
Sbjct:     8 CDSCKSTAATLFCRADAAFLCGDCDGKIHTANKLASRHERVWL---------CEVCEQAP 58

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATGIRVALSSSCSKDAERN 117
             A + C  D A  C  CD  IHS   LS  H+R   T    A+  + S  +  N
Sbjct:    59 AHVTCKADAAALCVTCDRDIHSANPLSRRHERVPITPFYDAVGPAKSASSSVN 111

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005515 "protein binding" evidence=IPI

GO:0010099 "regulation of photomorphogenesis" evidence=IMP

GO:0010161 "red light signaling pathway" evidence=IMP

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0032880 "regulation of protein localization" evidence=RCA

UNIPROTKB|Q9FRZ7 Hd1 "Hd1 protein" [Oryza sativa Indica Group (taxid:39946)]

 Score = 201 (75.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 39/92 (42%), Positives = 52/92 (56%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C  AP+ V C AD A LCA CD  VHAAN++AS+H+R+ +         C+ C++  
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV---------CEACEQAP 85

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
             A + C  D A  C  CD  +HS   L+  HQR
Sbjct:    86 AALACRADAAALCVACDVQVHSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

UNIPROTKB|Q9FRZ6 Q9FRZ6 "Hd1" [Oryza sativa (taxid:4530)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/92 (41%), Positives = 51/92 (55%)

Query:     5 CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPPCDICQEKA 64
             CD C  AP+ V C AD A LCA CD  VHAAN++AS+H+R+ +         C+ C+   
Sbjct:    35 CDGCRAAPSVVYCRADAAYLCASCDARVHAANRVASRHERVRV---------CEACERAP 85

Query:    65 AFIFCVEDRALFCKDCDEPIHSPGSLSANHQR 96
             A + C  D A  C  CD  ++S   L+  HQR
Sbjct:    86 AALACRADAAALCVACDVQVYSANPLARRHQR 117

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0008270 "zinc ion binding" evidence=ISS

GO:0010229 "inflorescence development" evidence=IGI

GO:0048571 "long-day photoperiodism" evidence=IEP

GO:0048572 "short-day photoperiodism" evidence=IEP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SID1	STH_ARATH	No assigned EC number	0.7098	0.9461	0.6638	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_640116 hypothetical protein (239 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	167
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-07
smart00336	42	smart00336, BBOX, B-Box-type zinc finger	3e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	9e-06
cd00021	39	cd00021, BBOX, B-Box-type zinc finger; zinc bindin	2e-05
pfam00643	42	pfam00643, zf-B_box, B-box zinc finger	0.002

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 44.3 bits (105), Expect = 3e-07
 Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 6/46 (13%)

Query: 53 KLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFL 98
          + P CD   ++ A  FC E  AL C+ CDE  H        H   L
Sbjct: 2  RAPKCDSHGDEPAEFFCEECGALLCRTCDEAEHR------GHTVVL 41

Length = 42

>gnl|CDD|197662 smart00336, BBOX, B-Box-type zinc finger

 Score = 41.9 bits (99), Expect = 3e-06
 Identities = 14/43 (32%), Positives = 15/43 (34%), Gaps = 6/43 (13%)

Query: 5  CDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL 47
          CD     PA   C    A LC  CD   H        H  +LL
Sbjct: 6  CDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL 42

Length = 42

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 40.3 bits (95), Expect = 9e-06
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)

Query: 55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFL 98
            CD   E+   +FC  DRAL C DCD  +HS       H+R  
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVP 38

Length = 39

>gnl|CDD|237988 cd00021, BBOX, B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 6/45 (13%)

Query: 3  IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL 47
            CD   + P ++ C  D A LC  CD+ VH      S H+R+ L
Sbjct: 1  RLCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL 39

Length = 39

>gnl|CDD|216039 pfam00643, zf-B_box, B-box zinc finger

 Score = 34.0 bits (78), Expect = 0.002
 Identities = 9/35 (25%), Positives = 17/35 (48%)

Query: 52 NKLPPCDICQEKAAFIFCVEDRALFCKDCDEPIHS 86
          +K   C   +EK   ++C + + L C++C    H 
Sbjct: 1  SKERLCPEHEEKPLELYCEDCQQLLCEECALSGHK 35

Length = 42

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.76
cd00021	39	BBOX B-Box-type zinc finger; zinc binding domain (	97.56
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.32
smart00336	42	BBOX B-Box-type zinc finger.	97.2
PF00643	42	zf-B_box: B-box zinc finger; InterPro: IPR000315 Z	97.15
smart00336	42	BBOX B-Box-type zinc finger.	96.9
KOG4367	699	consensus Predicted Zn-finger protein [Function un	96.64
PF13248	26	zf-ribbon_3: zinc-ribbon domain	80.8

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.76  E-value=2.1e-05  Score=47.52  Aligned_cols=38  Identities=39%  Similarity=0.853  Sum_probs=33.6

Q ss_pred             cccccCCCCeEEEecccccccchhhchhcccCcccccCceecee
Q 031017            4 QCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL   47 (167)
Q Consensus         4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (167)
                      .|+.++++++.+||..|+..+|..|+...|.      .|.|+||
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H~------~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVHS------GHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhcC------CCCEeeC
Confidence            6899998899999999999999999987773      8888875

>cd00021 BBOX B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction

Probab=97.56  E-value=6.2e-05  Score=45.46  Aligned_cols=38  Identities=42%  Similarity=0.831  Sum_probs=33.4

Q ss_pred             CCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceee
Q 031017           56 PCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLA   99 (167)
Q Consensus        56 ~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l   99 (167)
                      .|+.|+++++.+||..|...+|..|+...|      +.|++++|
T Consensus         2 ~C~~H~~~~~~~fC~~~~~~iC~~C~~~~H------~~H~~~~i   39 (39)
T cd00021           2 LCDEHGEEPLSLFCETDRALLCVDCDLSVH------SGHRRVPL   39 (39)
T ss_pred             CCCccCCcceEEEeCccChhhhhhcChhhc------CCCCEeeC
Confidence            499999989999999999999999998776      47888764

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.32  E-value=0.00023  Score=44.08  Aligned_cols=40  Identities=23%  Similarity=0.571  Sum_probs=34.0

Q ss_pred             CccccccCCCCeEEEecccccccchhhchhcccCcccccCceecee
Q 031017            2 KIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL   47 (167)
Q Consensus         2 ~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (167)
                      ...|+.+++.++.+||..+...+|..|....|..      |..++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~~------H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHKG------HKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTTT------SEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCCC------CEEeEC
Confidence            3579999998899999999999999999998854      887765

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=97.20  E-value=0.0003  Score=42.94  Aligned_cols=39  Identities=36%  Similarity=0.642  Sum_probs=33.5

Q ss_pred             ccccccCCCCeEEEecccccccchhhchhcccCcccccCceecee
Q 031017            3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLL   47 (167)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL   47 (167)
                      ..|..+++.++.+||..|++.+|..|....|      +.|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            5689998889999999999999999997766      57877664

>PF00643 zf-B_box: B-box zinc finger; InterPro: IPR000315 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.15  E-value=0.00019  Score=44.41  Aligned_cols=40  Identities=23%  Similarity=0.494  Sum_probs=33.5

Q ss_pred             CCCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceee
Q 031017           54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLA   99 (167)
Q Consensus        54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l   99 (167)
                      ...|+.|++.++.+||.++...+|..|....|.      +|+.++|
T Consensus         3 ~~~C~~H~~~~~~~~C~~C~~~~C~~C~~~~H~------~H~~~~i   42 (42)
T PF00643_consen    3 EPKCPEHPEEPLSLFCEDCNEPLCSECTVSGHK------GHKIVPI   42 (42)
T ss_dssp             SSB-SSTTTSBEEEEETTTTEEEEHHHHHTSTT------TSEEEEC
T ss_pred             CccCccCCccceEEEecCCCCccCccCCCCCCC------CCEEeEC
Confidence            345999999999999999999999999988884      3877764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents B-box-type zinc finger domains, which are around 40 residues in length. B-box zinc fingers can be divided into two groups, where types 1 and 2 B-box domains differ in their consensus sequence and in the spacing of the 7-8 zinc-binding residues. Several proteins contain both types 1 and 2 B-boxes, suggesting some level of cooperativity between these two domains. B-box domains are found in over 1500 proteins from a variety of organisms. They are found in TRIM (tripartite motif) proteins that consist of an N-terminal RING finger (originally called an A-box), followed by 1-2 B-box domains and a coiled-coil domain (also called RBCC for Ring, B-box, Coiled-Coil). TRIM proteins contain a type 2 B-box domain, and may also contain a type 1 B-box. In proteins that do not contain RING or coiled-coil domains, the B-box domain is primarily type 2. Many type 2 B-box proteins are involved in ubiquitinylation. Proteins containing a B-box zinc finger domain include transcription factors, ribonucleoproteins and proto-oncoproteins; for example, MID1, MID2, TRIM9, TNL, TRIM36, TRIM63, TRIFIC, NCL1 and CONSTANS-like proteins []. The microtubule-associated E3 ligase MID1 (6.3.2 from EC) contains a type 1 B-box zinc finger domain. MID1 specifically binds Alpha-4, which in turn recruits the catalytic subunit of phosphatase 2A (PP2Ac). This complex is required for targeting of PP2Ac for proteasome-mediated degradation. The MID1 B-box coordinates two zinc ions and adopts a beta/beta/alpha cross-brace structure similar to that of ZZ, PHD, RING and FYVE zinc fingers [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 3DDT_B 2D8U_A 3Q1D_A 2EGM_A 2YVR_B 2DJA_A 2DQ5_A 2JUN_A 2YRG_A 2DID_A ....

>smart00336 BBOX B-Box-type zinc finger

Probab=96.90  E-value=0.00081  Score=41.01  Aligned_cols=39  Identities=41%  Similarity=0.782  Sum_probs=33.0

Q ss_pred             CCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceee
Q 031017           55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLA   99 (167)
Q Consensus        55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l   99 (167)
                      ..|+.|+..++.+||..|...+|..|....|      ++|.+++|
T Consensus         4 ~~C~~h~~~~~~~~C~~c~~~iC~~C~~~~H------~~H~~~~l   42 (42)
T smart00336        4 PKCDSHGDEPAEFFCEECGALLCRTCDEAEH------RGHTVVLL   42 (42)
T ss_pred             CcCCCCCCCceEEECCCCCcccccccChhhc------CCCceecC
Confidence            3499999899999999999999999997766      57877654

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=96.64  E-value=0.00054  Score=63.33  Aligned_cols=82  Identities=27%  Similarity=0.560  Sum_probs=69.7

Q ss_pred             ccccccCCCC--eEEEecccccccchhhchhcccCcccccCceeceecc-------cCCCCCCCcccccCceEEEecCCc
Q 031017            3 IQCDVCEKAP--ATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC-------LSNKLPPCDICQEKAAFIFCVEDR   73 (167)
Q Consensus         3 ~~Cd~C~~~~--A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~-------~~~~~~~Cd~C~~~pA~v~C~~d~   73 (167)
                      ..|..|++++  |+|+|..+..+.|.-|..+.|-+...+.||.-+|-++       .+++...|..|+.+.-..||..+.
T Consensus       163 ~kcqlce~a~k~a~v~ceqcdv~yc~pc~~~~hp~rgplakh~l~~~~~grvs~~~s~r~~~~ct~h~~e~~smyc~~ck  242 (699)
T KOG4367|consen  163 LKCQLCEKAPKEATVMCEQCDVFYCDPCRLRCHPPRGPLAKHRLVPPAQGRVSRRLSPRKVSTCTDHELENHSMYCVQCK  242 (699)
T ss_pred             hhhhhhcCChhhhhhhHhhCceEEechHHhccCCCCCchhhcccCCcccCceeeccchhhhhhccCCCCCCceEEEEecC
Confidence            3699999975  9999999999999999999999888889998776544       334677899999999889999998


Q ss_pred             cccccccCCCC
Q 031017           74 ALFCKDCDEPI   84 (167)
Q Consensus        74 a~LC~~CD~~i   84 (167)
                      ...|..|-...
T Consensus       243 ~pvc~~clee~  253 (699)
T KOG4367|consen  243 MPVCYQCLEEG  253 (699)
T ss_pred             ChHHHHHHHhh
Confidence            88888887553

>PF13248 zf-ribbon_3: zinc-ribbon domain

Probab=80.80  E-value=1.2  Score=25.21  Aligned_cols=25  Identities=24%  Similarity=0.706  Sum_probs=18.4

Q ss_pred             CCccccccCCCCeEEEecccccccchhhchh
Q 031017            1 MKIQCDVCEKAPATVICCADEAALCAKCDVE   31 (167)
Q Consensus         1 m~~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~   31 (167)
                      |...|-.|+...      .+++.+|..|..+
T Consensus         1 m~~~Cp~Cg~~~------~~~~~fC~~CG~~   25 (26)
T PF13248_consen    1 MEMFCPNCGAEI------DPDAKFCPNCGAK   25 (26)
T ss_pred             CcCCCcccCCcC------CcccccChhhCCC
Confidence            788899999732      5567888888754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	167
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	4e-04

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens} Length = 101

 Score = 36.8 bits (85), Expect = 4e-04
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 4/83 (4%)

Query: 2  KIQCDVCE---KAPATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPC 57
          K+ C  C+      A   C   E + C +C    H   K  + H+ +  +     +   C
Sbjct: 3  KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMC 62

Query: 58 DICQEKAAFIFCVEDRALFCKDC 80
             +++   ++CV D  L C  C
Sbjct: 63 LEHEDEKVNMYCVTDDQLICALC 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	99.18
2dja_A	84	Midline-2; tripartite motif protein 1, ZF-B_BOX, s	95.1
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	94.63
3ddt_A	48	E3 ubiquitin-protein ligase TRIM63; zinc-binding m	93.87
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	93.77
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	93.74
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	93.43
1fre_A	42	Nuclear factor XNF7; zinc-binding protein, BBOX, d	92.95
2d8u_A	64	Ubiquitin ligase TRIM63; tripartite motif-containi	92.58
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	91.57
2csv_A	72	Tripartite motif protein 29; ZF-B_BOX domain, TRIM	89.92
2did_A	53	Tripartite motif protein 39; ZF-B-box domian, Zn b	86.63
2egm_A	57	Tripartite motif-containing protein 41; ZF-B_BOX d	86.22
2ffw_A	78	Midline-1; B-BOX, ring finger, zinc-finger, ligase	83.15
2yvr_A	50	Transcription intermediary factor 1-beta; ZF-B_BOX	82.57
2yrg_A	59	Tripartite motif-containing protein 5; B-box domai	82.13

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=99.18  E-value=2e-11  Score=87.45  Aligned_cols=93  Identities=23%  Similarity=0.446  Sum_probs=77.8

Q ss_pred             CccccccCC---CCeEEEecccccccchhhchhcccCcccccCceec-eecccCCCCCCCcccccCceEEEecCCccccc
Q 031017            2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQRL-LLQCLSNKLPPCDICQEKAAFIFCVEDRALFC   77 (167)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~Rv-pL~~~~~~~~~Cd~C~~~pA~v~C~~d~a~LC   77 (167)
                      +..|++|.+   .+|+.+|..+.+.||..|...+|..++.+++|.++ |+...+.....|+.|+.++..+||..|...+|
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~~~~~~~~~~~~~C~~H~~e~l~~fC~~~~~~iC   82 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLIEPIPDSHIRGLMCLEHEDEKVNMYCVTDDQLIC   82 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBSSCCCSCCSSCCCCSSCSSSCCCEEETTTTEEEC
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeeeccccccCccCCcCcCcCCCcceEECCCCCCccc
Confidence            467999984   68999999999999999999999988888999987 56544445678999998889999999999999


Q ss_pred             cccCC-CCCCCCCCCCCCcceeec
Q 031017           78 KDCDE-PIHSPGSLSANHQRFLAT  100 (167)
Q Consensus        78 ~~CD~-~iH~an~ls~~HqRv~l~  100 (167)
                      ..|.. ..|      +.|..++|+
T Consensus        83 ~~C~~~~~H------~~H~~~~l~  100 (101)
T 2jun_A           83 ALCKLVGRH------RDHQVAALS  100 (101)
T ss_dssp             HHHHHHTTT------SSSCBCCCC
T ss_pred             hhcCCCCCc------CCCCeecCC
Confidence            99986 677      457666553

>2dja_A Midline-2; tripartite motif protein 1, ZF-B_BOX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dq5_A

Probab=95.10  E-value=0.012  Score=40.21  Aligned_cols=57  Identities=19%  Similarity=0.225  Sum_probs=41.4

Q ss_pred             ccCceeceeccc-CCCCCCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecc
Q 031017           39 ASKHQRLLLQCL-SNKLPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG  101 (167)
Q Consensus        39 a~rH~RvpL~~~-~~~~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~  101 (167)
                      +.+|..+.-... ......|+.|+..+-.+||..|...+|..|.. .-|      +.|..++|+.
T Consensus         2 ~~~H~l~~p~~~~~~~~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e   60 (84)
T 2dja_A            2 SSGSSGVEPVPDTHLRGITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLND   60 (84)
T ss_dssp             CCCCCCCCCCCCCCSSCCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCS
T ss_pred             CCCCcccCCCCCCCCCCCcCcCcCCccccEEcCCCCceEcccCcCCCCC------CCCCccCHHH
Confidence            356776654331 22355799998888999999999999999986 566      4576666654

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=94.63  E-value=0.02  Score=39.36  Aligned_cols=43  Identities=26%  Similarity=0.583  Sum_probs=36.4

Q ss_pred             CccccccCC---CCeEEEecccccccchhhchhcccCcccccCcee
Q 031017            2 KIQCDVCEK---APATVICCADEAALCAKCDVEVHAANKLASKHQR   44 (167)
Q Consensus         2 ~~~Cd~C~~---~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~R   44 (167)
                      .+.||+|.+   .+|+..|..+.+.||..|=...|...+.+++|.=
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            368999986   6799999999999999998667987777788863

>3ddt_A E3 ubiquitin-protein ligase TRIM63; zinc-binding motif, ring-like fold, coiled coil, cytoplasm, metal-binding, muscle protein, nucleus; 1.90A {Homo sapiens} SCOP: g.43.1.1 PDB: 3q1d_A

Probab=93.87  E-value=0.024  Score=34.95  Aligned_cols=41  Identities=20%  Similarity=0.365  Sum_probs=32.5

Q ss_pred             CCCCcccccCceEEEecCCccccccccC-CCCCCCCCCCCCCcceeec
Q 031017           54 LPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT  100 (167)
Q Consensus        54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD-~~iH~an~ls~~HqRv~l~  100 (167)
                      ...|..|+.++..+||..|...+|..|. ...|      +.|..++|+
T Consensus         6 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~   47 (48)
T 3ddt_A            6 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   47 (48)
T ss_dssp             SCBCSSSTTSBCCEEETTTTEEECHHHHHHSTT------TTSCEEECC
T ss_pred             CCcCCCCCCccccEEcCCCCeeEcccccCCCcC------CCCcEEeCC
Confidence            4569999978889999999999999996 4566      457666653

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=93.77  E-value=0.017  Score=40.49  Aligned_cols=43  Identities=21%  Similarity=0.526  Sum_probs=36.1

Q ss_pred             CCCccccc---CceEEEecCCccccccccCCCCCCCCCCCCCCcce
Q 031017           55 PPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRF   97 (167)
Q Consensus        55 ~~Cd~C~~---~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv   97 (167)
                      ..|++|.+   .+|..+|..+...||..|...+|..++...+|+++
T Consensus         4 ~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h~~~~~~~~h~l~   49 (101)
T 2jun_A            4 VLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRLI   49 (101)
T ss_dssp             CBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHSCSCSSSTTCCBS
T ss_pred             CCCcCCCCCCCCCceEECCcCChHHhHHHCHHHhccCCccCCCeee
Confidence            34999985   58999999999999999998888777666788765

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=93.74  E-value=0.022  Score=35.30  Aligned_cols=41  Identities=24%  Similarity=0.579  Sum_probs=33.4

Q ss_pred             CCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceeecc
Q 031017           55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG  101 (167)
Q Consensus        55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l~~  101 (167)
                      ..|+.|+.++..+||..|...+|..|....|      +.|..++|+.
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e   47 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED   47 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence            3499998888999999999999999987656      4677776653

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=93.43  E-value=0.052  Score=34.02  Aligned_cols=40  Identities=28%  Similarity=0.514  Sum_probs=32.2

Q ss_pred             CCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecc
Q 031017           55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG  101 (167)
Q Consensus        55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~  101 (167)
                      ..|+.|+ ++..+||..|...+|..|.. .-|      +.|..++|+.
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~e   49 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSG   49 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCC
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHH
Confidence            3599998 67899999999999999986 566      4677777653

>1fre_A Nuclear factor XNF7; zinc-binding protein, BBOX, development, MID-blastula- transition; NMR {Xenopus laevis} SCOP: g.43.1.1

Probab=92.95  E-value=0.051  Score=32.36  Aligned_cols=29  Identities=24%  Similarity=0.596  Sum_probs=24.5

Q ss_pred             CCcccccCceEEEecCCccccccccCC-CCC
Q 031017           56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIH   85 (167)
Q Consensus        56 ~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH   85 (167)
                      .|+.|+ ++..+||..|...+|..|.. .-|
T Consensus         5 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H   34 (42)
T 1fre_A            5 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH   34 (42)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC
T ss_pred             cchhhC-CeeeEEeCCCCeEEeccCCCCCCC
Confidence            599997 66889999999999999986 455

>2d8u_A Ubiquitin ligase TRIM63; tripartite motif-containing 63, muscle-specific ring finger protein 1, MURF1, ring finger protein 28; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=92.58  E-value=0.045  Score=35.36  Aligned_cols=42  Identities=19%  Similarity=0.375  Sum_probs=33.3

Q ss_pred             CCCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecc
Q 031017           54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATG  101 (167)
Q Consensus        54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~  101 (167)
                      ...|+.|+.++..+||..|...+|..|.. ..|      +.|..++|+.
T Consensus         8 ~~~C~~H~~e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~~   50 (64)
T 2d8u_A            8 HPMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQS   50 (64)
T ss_dssp             CCCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTTT
T ss_pred             CCcCcCcCCCccceEcCcCCceeCccccCCCcC------CCCCeeCHHH
Confidence            34599998888999999999999999974 466      3577666654

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.57  E-value=0.078  Score=34.27  Aligned_cols=41  Identities=27%  Similarity=0.611  Sum_probs=32.4

Q ss_pred             CCCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceeecce
Q 031017           55 PPCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLATGI  102 (167)
Q Consensus        55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l~~i  102 (167)
                      ..|..|+ ++..+||..|...+|..|.. .-|      +.|..++|+..
T Consensus        15 ~~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea   56 (59)
T 2yrg_A           15 DHCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP   56 (59)
T ss_dssp             SBCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred             ccChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence            3599997 56889999999999999986 555      46777776543

>2csv_A Tripartite motif protein 29; ZF-B_BOX domain, TRIM29, ataxia-telangiectasia group D-associated protein, ATDC, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1

Probab=89.92  E-value=0.15  Score=33.77  Aligned_cols=41  Identities=24%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             CCCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceeecc
Q 031017           54 LPPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG  101 (167)
Q Consensus        54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l~~  101 (167)
                      ...|+.|+ ++-.+||..|...+|..|...-|      +.|..++|+.
T Consensus        18 ~~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~H------~~H~~~~l~e   58 (72)
T 2csv_A           18 ARKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE   58 (72)
T ss_dssp             CCBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred             cCcCcccC-CceEEEeCCCCeEEccccCCCCC------CCCCEecHHH
Confidence            45699995 77899999999999999987556      4687777764

>2did_A Tripartite motif protein 39; ZF-B-box domian, Zn binding, one sequence two fold, NPPSFA; NMR {Homo sapiens} SCOP: g.43.1.1 PDB: 2dif_A

Probab=86.63  E-value=0.52  Score=29.27  Aligned_cols=41  Identities=22%  Similarity=0.502  Sum_probs=31.0

Q ss_pred             ccccccCCCCeEEEecccccccchhhch-hcccCcccccCceeceeccc
Q 031017            3 IQCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL   50 (167)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~   50 (167)
                      ..|..-+ .+-.+||..|...+|..|-. .-|      +.|..+||+++
T Consensus         9 ~~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~~~~l~ea   50 (53)
T 2did_A            9 SLCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPLSGP   50 (53)
T ss_dssp             CBCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEECCCT
T ss_pred             CcChhhC-CeeeEEeCCCCeEEeccccCCCCC------CCCcEeeHHHH
Confidence            3566665 56789999999999999985 455      46777887554

>2egm_A Tripartite motif-containing protein 41; ZF-B_BOX domain, tripartite motif protein 41, TRIM41, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.22  E-value=0.11  Score=33.31  Aligned_cols=31  Identities=32%  Similarity=0.547  Sum_probs=25.6

Q ss_pred             CCCCcccccCceEEEecCCccccccccCC-CCC
Q 031017           54 LPPCDICQEKAAFIFCVEDRALFCKDCDE-PIH   85 (167)
Q Consensus        54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH   85 (167)
                      ...|..|+ ++..+||..|...+|..|.. .-|
T Consensus        18 ~~~C~~H~-e~L~lfC~~d~~~iC~~C~~~~eH   49 (57)
T 2egm_A           18 QGICPKHQ-EALKLFCEVDEEAICVVCRESRSH   49 (57)
T ss_dssp             TSBCTTTC-CBCCEEETTTTEEECHHHHHSHHH
T ss_pred             cCcChhhC-ceeeEEcCCCCcEEecccCCCCCC
Confidence            44599995 67899999999999999985 445

>2ffw_A Midline-1; B-BOX, ring finger, zinc-finger, ligase; NMR {Homo sapiens}

Probab=83.15  E-value=0.27  Score=33.55  Aligned_cols=43  Identities=21%  Similarity=0.502  Sum_probs=34.6

Q ss_pred             CCCCccccc---CceEEEecCCccccccccCCCCCCCCCCCCCCcc
Q 031017           54 LPPCDICQE---KAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQR   96 (167)
Q Consensus        54 ~~~Cd~C~~---~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqR   96 (167)
                      ...|++|..   .+|.-.|..+.+.||..|-...|...+...+|+-
T Consensus        30 ~v~C~~C~~~~~~~A~ksCl~C~~s~C~~hl~~~H~~~~~~~~H~L   75 (78)
T 2ffw_A           30 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATHPNKKPFTGHRL   75 (78)
T ss_dssp             CCBCSSCCSSSCCBCCEEETTTTEEECHHHHHHHSCCCSSSCSCCC
T ss_pred             CccCCcCCCCCCCCCeeEccCccchhhhhhhHhhcCCCCCCCCCcc
Confidence            455999986   5789999999999999998777876666667754

>2yvr_A Transcription intermediary factor 1-beta; ZF-B_BOX domain, structural genomics, NPPSFA; 1.80A {Homo sapiens}

Probab=82.57  E-value=1  Score=27.48  Aligned_cols=41  Identities=24%  Similarity=0.638  Sum_probs=30.9

Q ss_pred             ccccccCCCCeEEEecccccccchhhchhcccCcccccCceeceecc
Q 031017            3 IQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQC   49 (167)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~vH~aN~la~rH~RvpL~~   49 (167)
                      ..|..-...+-.+||..|...+|..|-..-|      +.|..++|++
T Consensus         7 ~~C~~H~~e~l~lfC~~~~~~iC~~C~~~~H------~~H~~~~l~e   47 (50)
T 2yvr_A            7 VYCNVHKHEPLVLFCESCDTLTCRDCQLNAH------KDHQYQFLED   47 (50)
T ss_dssp             CBCSSSTTCBCCEEETTTTEEECHHHHHTTT------TTCCEEETTC
T ss_pred             CcCcCCCCCCEEEEeCCCCEEEecccCCCcC------CCCceecHHH
Confidence            3566664466789999999999999976555      4677777754

>2yrg_A Tripartite motif-containing protein 5; B-box domain, ring finger protein 88, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=82.13  E-value=1.1  Score=28.66  Aligned_cols=40  Identities=18%  Similarity=0.395  Sum_probs=30.0

Q ss_pred             cccccCCCCeEEEecccccccchhhch-hcccCcccccCceeceeccc
Q 031017            4 QCDVCEKAPATVICCADEAALCAKCDV-EVHAANKLASKHQRLLLQCL   50 (167)
Q Consensus         4 ~Cd~C~~~~A~vyC~aD~A~LC~~CD~-~vH~aN~la~rH~RvpL~~~   50 (167)
                      .|..-+ .+-.+||..|...+|..|.. .-|      +.|..++|.++
T Consensus        16 ~C~~H~-e~L~lfC~~d~~~iC~~C~~s~eH------~~H~~~~l~ea   56 (59)
T 2yrg_A           16 HCARHG-EKLLLFCQEDGKVICWLCERSQEH------RGHHTFPTSGP   56 (59)
T ss_dssp             BCTTTC-CBCCEEETTTCSEECHHHHTSTTT------TTCCEEECCSS
T ss_pred             cChhhC-ceeeeecCCCCcEEecccCCCCcC------CCCcEeeHHHH
Confidence            465555 46789999999999999985 455      46777777544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	167
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	95.47
d2d8ua1	51	Ubiquitin ligase trim63 {Human (Homo sapiens) [Tax	93.89
d1frea_	39	Nuclear factor XNF7 {African clawed frog (Xenopus	93.77
d2dq5a1	47	Midline-1 {Human (Homo sapiens) [TaxId: 9606]}	93.29
d2dida1	40	Tripartite motif-containing protein 39 {Human (Hom	92.56
d2csva1	59	Tripartite motif-containing protein 29 {Human (Hom	90.18
d2djaa1	71	Midline-2 {Human (Homo sapiens) [TaxId: 9606]}	83.43

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.47  E-value=0.004  Score=40.11  Aligned_cols=41  Identities=24%  Similarity=0.409  Sum_probs=33.0

Q ss_pred             CCCCcccccCceEEEecCCccccccccC-CCCCCCCCCCCCCcceeec
Q 031017           54 LPPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT  100 (167)
Q Consensus        54 ~~~Cd~C~~~pA~v~C~~d~a~LC~~CD-~~iH~an~ls~~HqRv~l~  100 (167)
                      ...|+.|.+++..+||..|...+|..|. .+.|      .+|.-.+|.
T Consensus        11 ~~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~   52 (71)
T d2djaa1          11 GITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLN   52 (71)
T ss_dssp             CCCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCC
T ss_pred             CCcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHH
Confidence            3459999999999999999999999996 4456      457666654

>d2d8ua1 g.43.1.1 (A:8-58) Ubiquitin ligase trim63 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Ubiquitin ligase trim63
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.89  E-value=0.0098  Score=36.35  Aligned_cols=40  Identities=20%  Similarity=0.389  Sum_probs=31.2

Q ss_pred             CCCcccccCceEEEecCCccccccccC-CCCCCCCCCCCCCcceeec
Q 031017           55 PPCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLAT  100 (167)
Q Consensus        55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD-~~iH~an~ls~~HqRv~l~  100 (167)
                      |.|+.|.+++..+||..|...+|..|. ...|      ++|.-.+|.
T Consensus         2 p~C~~H~~e~l~~yC~~c~~~iC~~C~~~~~H------k~H~v~~l~   42 (51)
T d2d8ua1           2 PMCKEHEDEKINIYCLTCEVPTCSMCKVFGIH------KACEVAPLQ   42 (51)
T ss_dssp             CCCSSCTTCCCCSEESSSCCCCCSHHHHSSST------TSSCEECTT
T ss_pred             CCCcccCcCcceEEcCCCCceECccccCcCCc------CcCcCcCHH
Confidence            359999999999999999999999995 4466      347555544

>d1frea_ g.43.1.1 (A:) Nuclear factor XNF7 {African clawed frog (Xenopus laevis) [TaxId: 8355]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Nuclear factor XNF7
species: African clawed frog (Xenopus laevis) [TaxId: 8355]

Probab=93.77  E-value=0.015  Score=33.92  Aligned_cols=37  Identities=24%  Similarity=0.519  Sum_probs=28.1

Q ss_pred             CCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceee
Q 031017           56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLA   99 (167)
Q Consensus        56 ~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l   99 (167)
                      +|+.|+ ++-.+||..|...+|..|.. ..|      ++|.-+||
T Consensus         2 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   39 (39)
T d1frea_           2 KCSEHD-ERLKLYCKDDGTLSCVICRDSLKH------ASHNFLPI   39 (39)
T ss_dssp             CCCSSC-SSCCCCCCSSSSSSCCTTSSCSSC------TTCCCCCC
T ss_pred             CCcccC-cceeEEcccCCcEeeccCcCCCCc------CCCcEeeC
Confidence            588996 56889999999999999964 345      45665553

>d2dq5a1 g.43.1.1 (A:168-214) Midline-1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.29  E-value=0.02  Score=34.35  Aligned_cols=38  Identities=26%  Similarity=0.507  Sum_probs=30.7

Q ss_pred             CCcccccCceEEEecCCccccccccC-CCCCCCCCCCCCCcceee
Q 031017           56 PCDICQEKAAFIFCVEDRALFCKDCD-EPIHSPGSLSANHQRFLA   99 (167)
Q Consensus        56 ~Cd~C~~~pA~v~C~~d~a~LC~~CD-~~iH~an~ls~~HqRv~l   99 (167)
                      .|..|.+++..+||..+...+|..|- ...|      +.|.-.+|
T Consensus         7 ~C~~H~~e~l~~yC~~C~~~iC~~C~~~~~H------~~H~~~~l   45 (47)
T d2dq5a1           7 MCLEHEDEKVNMYCVTDDQLICALCKLVGRH------RDHQVAAL   45 (47)
T ss_dssp             BCSSCTTSBEEEEETTTTEEEEHHHHHTSST------TSSCCCCS
T ss_pred             cchhhCCCcceEEcCCCCccCCccCcCcCCc------CCCeEeeC
Confidence            39999999999999999999999995 4466      34655554

>d2dida1 g.43.1.1 (A:8-47) Tripartite motif-containing protein 39 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 39
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.56  E-value=0.027  Score=32.80  Aligned_cols=37  Identities=27%  Similarity=0.479  Sum_probs=28.8

Q ss_pred             CCcccccCceEEEecCCccccccccCC-CCCCCCCCCCCCcceee
Q 031017           56 PCDICQEKAAFIFCVEDRALFCKDCDE-PIHSPGSLSANHQRFLA   99 (167)
Q Consensus        56 ~Cd~C~~~pA~v~C~~d~a~LC~~CD~-~iH~an~ls~~HqRv~l   99 (167)
                      .|..|+ ++-.+||.+|...+|..|.. +.|      +.|.-+||
T Consensus         3 ~C~~H~-e~l~lfC~~d~~~iC~~C~~~~~H------~~H~v~pi   40 (40)
T d2dida1           3 LCPQHH-EALSLFCYEDQEAVCLICAISHTH------RAHTVVPL   40 (40)
T ss_dssp             BCTTTC-CBCCEEESSSCSEECHHHHTSSTT------TTSCEEEC
T ss_pred             cchhhC-ccceEEcccCCcEeeccCcCCCCc------CCCcEecC
Confidence            489995 66899999999999999964 456      45765553

>d2csva1 g.43.1.1 (A:8-66) Tripartite motif-containing protein 29 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Tripartite motif-containing protein 29
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.18  E-value=0.037  Score=34.53  Aligned_cols=40  Identities=25%  Similarity=0.466  Sum_probs=32.6

Q ss_pred             CCCcccccCceEEEecCCccccccccCCCCCCCCCCCCCCcceeecc
Q 031017           55 PPCDICQEKAAFIFCVEDRALFCKDCDEPIHSPGSLSANHQRFLATG  101 (167)
Q Consensus        55 ~~Cd~C~~~pA~v~C~~d~a~LC~~CD~~iH~an~ls~~HqRv~l~~  101 (167)
                      ..|..|+ ++-.+||..|...+|..|-...|      ..|.-++|..
T Consensus        12 ~~C~~H~-e~l~lyC~~c~~~iC~~C~~~~H------~~H~~~~l~~   51 (59)
T d2csva1          12 RKCPVHG-KTMELFCQTDQTCICYLCMFQEH------KNHSTVTVEE   51 (59)
T ss_dssp             CBCTTTC-CBCCEEESSSCCEECHHHHHTTT------SSSCEEEHHH
T ss_pred             CchhhhC-CccceECCCCCceECcccCcccC------CCCCeeCHHH
Confidence            3599995 67899999999999999977666      4587777653

>d2djaa1 g.43.1.1 (A:8-78) Midline-2 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: B-box zinc-binding domain
superfamily: B-box zinc-binding domain
family: B-box zinc-binding domain
domain: Midline-2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.43  E-value=0.39  Score=30.11  Aligned_cols=42  Identities=29%  Similarity=0.514  Sum_probs=32.0

Q ss_pred             ccccccCCCCeEEEecccccccchhhchh-cccCcccccCceeceeccc
Q 031017            3 IQCDVCEKAPATVICCADEAALCAKCDVE-VHAANKLASKHQRLLLQCL   50 (167)
Q Consensus         3 ~~Cd~C~~~~A~vyC~aD~A~LC~~CD~~-vH~aN~la~rH~RvpL~~~   50 (167)
                      ..|..-...+..+||..|...+|..|-.. .|      +.|.-.+|+++
T Consensus        12 ~~C~~H~~e~l~~fC~~C~~~iC~~C~~~~~H------k~H~~~~i~~a   54 (71)
T d2djaa1          12 ITCLDHENEKVNMYCVSDDQLICALCKLVGRH------RDHQVASLNDR   54 (71)
T ss_dssp             CCCSSCSSSCCCEEETTTTEEECHHHHHTSTT------TTCCBCCCCSS
T ss_pred             CcCcccCCccceeEcCCCCceeccccccCCCC------CCCcCcCHHHH
Confidence            45777766788999999999999999643 56      35777777544