Citrus Sinensis ID: 031060

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160------
Protein Sequence
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGM
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccEEEccccEEEccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccHHHccHHHHHHHHHHHHHHHHHHcHHHHHcccccHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHccccccEEEccccEEEcHHHcccccccccccccccccccccccEEEEEcccccccEcccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MTMELLRNLIPLMSLCFLVVFVQCKssllgvhpldekyfskevikckdgsksftrdrlndnfcdcidgtdepgtsacpagkfycgnvgstpqfifssrvndricdccdgsdeydssikcpntcvmggnieYKAQSYISTindagsidargakipvnkEDLIERLGM
Flexible Loop (DISEMBL)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVikckdgsksftrdrlnDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDagsidargakipvnkedlierlgm
Low Complexity Region (SEG)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGM
Disordered region (IsUnstruct)
****LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCC*************NTCVMGGNIEYKAQSYISTINDAGSI********************
Disordered Region (DISOPRED)
******R**IPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIE*****************************LIERLGM
Disordered Region (DISEMBL)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGM
Disordered Region (DISPRO)
*TMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERLGM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	166	2.2.26 [Sep-21-2011]
O08795	521	Glucosidase 2 subunit bet	yes	no	0.644	0.205	0.467	1e-26
P14314	528	Glucosidase 2 subunit bet	yes	no	0.644	0.202	0.467	2e-26
Q28034	533	Glucosidase 2 subunit bet	yes	no	0.644	0.200	0.467	6e-25
Q9USH8	506	Glucosidase 2 subunit bet	yes	no	0.608	0.199	0.486	2e-23
Q04924	702	Glucosidase 2 subunit bet	yes	no	0.337	0.079	0.485	8e-10
Q7TQH7	713	Low-density lipoprotein r	no	no	0.379	0.088	0.373	9e-05

>sp|O08795|GLU2B_MOUSE Glucosidase 2 subunit beta OS=Mus musculus GN=Prkcsh PE=1 SV=1

 Score =  119 bits (298), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 69/107 (64%)

Query: 38  YFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSS 97
           Y   +   C DG+ +   D++ND++CDC DG+DEPGT+ACP G F+C N G  P +I SS
Sbjct: 31  YEESKPFTCLDGTATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYILSS 90

Query: 98  RVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 144
           RVND +CDCCDG+DEY+S   C NTC   G  E ++   ++ +   G
Sbjct: 91  RVNDGVCDCCDGTDEYNSGTVCENTCREKGRKEKESLQQLAEVTREG 137

Regulatory subunit of glucosidase II.
Mus musculus (taxid: 10090)

>sp|P14314|GLU2B_HUMAN Glucosidase 2 subunit beta OS=Homo sapiens GN=PRKCSH PE=1 SV=2

 Score =  118 bits (295), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 70/107 (65%)

Query: 38  YFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSS 97
           Y   +   C DGS +   D++ND++CDC DG+DEPGT+ACP G F+C N G  P +I S+
Sbjct: 31  YDESKPFTCLDGSATIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSN 90

Query: 98  RVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 144
           RVND +CDCCDG+DEY+S + C NTC   G  E ++   ++ +   G
Sbjct: 91  RVNDGVCDCCDGTDEYNSGVICENTCKEKGRKERESLQQMAEVTREG 137

Regulatory subunit of glucosidase II.

Homo sapiens (taxid: 9606)

>sp|Q28034|GLU2B_BOVIN Glucosidase 2 subunit beta OS=Bos taurus GN=PRKCSH PE=2 SV=1

 Score =  113 bits (282), Expect = 6e-25,   Method: Composition-based stats.
 Identities = 50/107 (46%), Positives = 66/107 (61%)

Query: 38  YFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSS 97
           Y   +   C DGS S   D++ND++CDC DG+DEPGT+ACP G F+C N G    +I S 
Sbjct: 30  YDESKPFTCLDGSASIPFDQVNDDYCDCKDGSDEPGTAACPNGSFHCTNTGYKALYISSR 89

Query: 98  RVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 144
            VND +CDCCDG+DEY+S I C NTC   G  E +    ++ +   G
Sbjct: 90  WVNDGVCDCCDGTDEYNSGIVCENTCKEKGRKERETLQQMAEVTREG 136

Regulatory subunit of glucosidase II.

Bos taurus (taxid: 9913)

>sp|Q9USH8|GLU2B_SCHPO Glucosidase 2 subunit beta OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=gtb1 PE=1 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 53/109 (48%), Positives = 71/109 (65%), Gaps = 8/109 (7%)

Query: 45  KCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRIC 104
           KC    K  + +++ND++CDC DG+DEPGTSAC  GKF+C N G    +I S+RV+D +C
Sbjct: 47  KCLGSDKLISFNQVNDDYCDCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106

Query: 105 DCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKI 153
           DCCDGSDE  S IKCPNTC        KA+ Y++T+ +   +   G KI
Sbjct: 107 DCCDGSDE--SLIKCPNTCAQ------KAREYLATLEEHNRLVKNGLKI 147

Subunit of glucosidase 2, which cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. Specifically required for the cleavage of the final glucose.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q04924|GLU2B_YEAST Glucosidase 2 subunit beta OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GTB1 PE=1 SV=1

 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 41/70 (58%), Gaps = 14/70 (20%)

Query: 57  RLNDNFCDCIDGTDEPGTSACP----------AGK----FYCGNVGSTPQFIFSSRVNDR 102
           ++ND  CDC DG+DEPG++AC            GK    FYC N G  P++I  S V D 
Sbjct: 63  QINDGVCDCPDGSDEPGSAACVEDIFKSVAEGGGKVNKYFYCDNKGFIPRYIRKSEVADG 122

Query: 103 ICDCCDGSDE 112
           ICDCCD SDE
Sbjct: 123 ICDCCDCSDE 132

Subunit of glucosidase 2, which cleaves sequentially the 2 innermost alpha-1,3-linked glucose residues from the Glc(2)Man(9)GlcNAc(2) oligosaccharide precursor of immature glycoproteins. Specifically required for the cleavage of the final glucose.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q7TQH7|LRP10_MOUSE Low-density lipoprotein receptor-related protein 10 OS=Mus musculus GN=Lrp10 PE=2 SV=2

 Score = 46.2 bits (108), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 25/67 (37%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 49  GSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGS---TPQFIFSSRVNDRICD 105
           G + ++  +  D   DC DGTDE G   CP G F CG  G+   T  ++ + R N +   
Sbjct: 329 GERCYSEAQRCDGSWDCADGTDEEGCPGCPPGHFPCGAAGTPGATACYLPADRCNYQTF- 387

Query: 106 CCDGSDE 112
           C DG+DE
Sbjct: 388 CADGADE 394

Probable receptor, which is involved in the internalization of lipophilic molecules and/or signal transduction. May be involved in the uptake of lipoprotein APOE in liver.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
255568349	210	glucosidase II beta subunit, putative [R	0.915	0.723	0.681	1e-55
224122030	213	predicted protein [Populus trichocarpa]	0.903	0.704	0.694	3e-55
225446519	197	PREDICTED: glucosidase 2 subunit beta-li	0.981	0.827	0.615	7e-54
302143378	205	unnamed protein product [Vitis vinifera]	0.981	0.795	0.615	8e-54
449453541	199	PREDICTED: uncharacterized protein LOC10	0.909	0.758	0.673	6e-53
18405960	212	protein kinase C substrate, heavy chain-	0.765	0.599	0.740	4e-51
224146511	136	predicted protein [Populus trichocarpa]	0.740	0.904	0.790	2e-50
297827917	211	hypothetical protein ARALYDRAFT_903594 [	0.963	0.758	0.591	8e-50
297788944	211	predicted protein [Arabidopsis lyrata su	0.963	0.758	0.591	1e-49
388510520	196	unknown [Lotus japonicus]	0.662	0.561	0.8	9e-47

>gi|255568349|ref|XP_002525149.1| glucosidase II beta subunit, putative [Ricinus communis] gi|223535608|gb|EEF37276.1| glucosidase II beta subunit, putative [Ricinus communis]

 Score =  221 bits (562), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 109/160 (68%), Positives = 124/160 (77%), Gaps = 8/160 (5%)

Query: 6   LRNLIP--LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
           L N IP  L+S  F + F   KSSLLGVHPLDEKYF+  VI+CKDGSKSFTRD  NDNFC
Sbjct: 10  LHNFIPFSLISFYFFIPFAHSKSSLLGVHPLDEKYFASRVIQCKDGSKSFTRDCFNDNFC 69

Query: 64  DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
           DC+DGTDEPGTSACP GKFYC N+GS PQFIFSSRVND+ICDCCDGSDEYDSS+ CPNTC
Sbjct: 70  DCVDGTDEPGTSACPRGKFYCRNLGSKPQFIFSSRVNDQICDCCDGSDEYDSSVNCPNTC 129

Query: 124 VMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIER 163
           VMGG++ Y+  S IS      SID   +K  V +EDL+ +
Sbjct: 130 VMGGDLNYRIGSRIS------SIDVNESKETVLREDLLHK 163

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122030|ref|XP_002330713.1| predicted protein [Populus trichocarpa] gi|222872317|gb|EEF09448.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 109/157 (69%), Positives = 126/157 (80%), Gaps = 7/157 (4%)

Query: 8   NLIP-LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCI 66
           NLIP ++SL FLV  V   S LLG+HPLDEKYF  +VIKCKDGSKSF+RDRLNDNFCDC+
Sbjct: 27  NLIPFIISLYFLVPSVHSFSPLLGIHPLDEKYFGSQVIKCKDGSKSFSRDRLNDNFCDCL 86

Query: 67  DGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMG 126
           DGTDEPGTSACP GKFYC N GSTP FIFSSRVND+ICDCCDGSDEYDS I CP TCVMG
Sbjct: 87  DGTDEPGTSACPRGKFYCRNAGSTPNFIFSSRVNDQICDCCDGSDEYDSGINCPRTCVMG 146

Query: 127 GNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIER 163
           GN+EY+A +YIS       ID + +K  +  E+L+++
Sbjct: 147 GNLEYRAGNYIS------RIDLKESKKGLISEELLQK 177

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225446519|ref|XP_002278847.1| PREDICTED: glucosidase 2 subunit beta-like [Vitis vinifera]

 Score =  214 bits (546), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 1/164 (0%)

Query: 1   MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLND 60
           M   L   LI L+S  FL+ +      +LG+HPLDEKY++ + IKCKDGSK F + R+ND
Sbjct: 1   MEPSLCFFLIALISAFFLITYSS-ALPILGIHPLDEKYYASQAIKCKDGSKFFNKARIND 59

Query: 61  NFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP 120
           NFCDCIDGTDEPGTSACPAGKFYC NVGSTP+F+FSS+VND  CDCCDGSDEY  SI CP
Sbjct: 60  NFCDCIDGTDEPGTSACPAGKFYCKNVGSTPKFLFSSQVNDHFCDCCDGSDEYSGSINCP 119

Query: 121 NTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERL 164
           NTCVMGG++EY+ +S++S I +   ID + AK  +N ED I +L
Sbjct: 120 NTCVMGGDVEYQTKSHVSAIGEVDPIDVKEAKTKLNLEDQIHKL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143378|emb|CBI21939.3| unnamed protein product [Vitis vinifera]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 101/164 (61%), Positives = 124/164 (75%), Gaps = 1/164 (0%)

Query: 1   MTMELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLND 60
           M   L   LI L+S  FL+ +      +LG+HPLDEKY++ + IKCKDGSK F + R+ND
Sbjct: 1   MEPSLCFFLIALISAFFLITYSS-ALPILGIHPLDEKYYASQAIKCKDGSKFFNKARIND 59

Query: 61  NFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP 120
           NFCDCIDGTDEPGTSACPAGKFYC NVGSTP+F+FSS+VND  CDCCDGSDEY  SI CP
Sbjct: 60  NFCDCIDGTDEPGTSACPAGKFYCKNVGSTPKFLFSSQVNDHFCDCCDGSDEYSGSINCP 119

Query: 121 NTCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLIERL 164
           NTCVMGG++EY+ +S++S I +   ID + AK  +N ED I +L
Sbjct: 120 NTCVMGGDVEYQTKSHVSAIGEVDPIDVKEAKTKLNLEDQIHKL 163

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453541|ref|XP_004144515.1| PREDICTED: uncharacterized protein LOC101205514 [Cucumis sativus] gi|449517285|ref|XP_004165676.1| PREDICTED: uncharacterized protein LOC101230880 [Cucumis sativus]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 103/153 (67%), Positives = 121/153 (79%), Gaps = 2/153 (1%)

Query: 12  LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE 71
           L+S+C     V+   S +GVHPLDEKY+S EVIKCKDGS+SFT DRLNDNFCDC+DGTDE
Sbjct: 14  LLSICLFFTSVRSAPSFIGVHPLDEKYYSSEVIKCKDGSRSFTIDRLNDNFCDCVDGTDE 73

Query: 72  PGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEY 131
           PGTSAC  GKFYC N+GSTP+FIFSSRVND ICDCCDGSDEY+ +I CPNTCVMGGN+ Y
Sbjct: 74  PGTSACARGKFYCRNMGSTPRFIFSSRVNDHICDCCDGSDEYEGNIFCPNTCVMGGNM-Y 132

Query: 132 KAQSYISTINDAGSIDARGAKIPVNKEDLIERL 164
           K+++ IST  D   I  R  K  + KEDL ++L
Sbjct: 133 KSKNDISTTRDV-DIVIRKVKEEITKEDLFQKL 164

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405960|ref|NP_565971.1| protein kinase C substrate, heavy chain-like protein [Arabidopsis thaliana] gi|20197489|gb|AAD23722.2| expressed protein [Arabidopsis thaliana] gi|21618247|gb|AAM67297.1| unknown [Arabidopsis thaliana] gi|30793891|gb|AAP40398.1| unknown protein [Arabidopsis thaliana] gi|30794054|gb|AAP40472.1| unknown protein [Arabidopsis thaliana] gi|110739276|dbj|BAF01551.1| hypothetical protein [Arabidopsis thaliana] gi|330255021|gb|AEC10115.1| protein kinase C substrate, heavy chain-like protein [Arabidopsis thaliana]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 94/127 (74%), Positives = 110/127 (86%)

Query: 5   LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
           LL+ ++   SL  +V+ V   S L+GVHPLDEKYF  +VIKCKDGSKSFTRDRLNDNFCD
Sbjct: 2   LLQCVVLCSSLAVVVISVASTSPLVGVHPLDEKYFDSDVIKCKDGSKSFTRDRLNDNFCD 61

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
           C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTC+
Sbjct: 62  CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCI 121

Query: 125 MGGNIEY 131
           MGGN+ Y
Sbjct: 122 MGGNVNY 128

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146511|ref|XP_002326032.1| predicted protein [Populus trichocarpa] gi|222862907|gb|EEF00414.1| predicted protein [Populus trichocarpa]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 98/124 (79%), Positives = 109/124 (87%), Gaps = 1/124 (0%)

Query: 9   LIP-LMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCID 67
           LIP ++SL FL   VQ  S LLG+HPLDEKYF  +VIKCKDGSKSF+RDRLNDNFCDC+D
Sbjct: 13  LIPFIISLYFLGSSVQSLSPLLGIHPLDEKYFGSQVIKCKDGSKSFSRDRLNDNFCDCLD 72

Query: 68  GTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGG 127
           GTDEPGTSACP+GKFYC N GSTP+FIFSSRVND+ICDCCDGSDEY S I CPNTCVMGG
Sbjct: 73  GTDEPGTSACPSGKFYCRNAGSTPKFIFSSRVNDQICDCCDGSDEYGSGINCPNTCVMGG 132

Query: 128 NIEY 131
           ++EY
Sbjct: 133 DLEY 136

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827917|ref|XP_002881841.1| hypothetical protein ARALYDRAFT_903594 [Arabidopsis lyrata subsp. lyrata] gi|297327680|gb|EFH58100.1| hypothetical protein ARALYDRAFT_903594 [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 4/164 (2%)

Query: 5   LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
           +L   + L SL  +VV      S LGVHPLDEKYF  ++IKCKDGSKSF++DRLNDNFCD
Sbjct: 1   MLLQCVVLCSLLAIVVVSVASISPLGVHPLDEKYFDSDIIKCKDGSKSFSKDRLNDNFCD 60

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
           C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTCV
Sbjct: 61  CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCV 120

Query: 125 MGGNIE--YKAQSYISTIN--DAGSIDARGAKIPVNKEDLIERL 164
           MGGN+   YK ++ + +I+     ++  + +    N +D+++ L
Sbjct: 121 MGGNVNYIYKPRTNLKSIHLQLGSTLHPKESYTMGNLQDMVKNL 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297788944|ref|XP_002862496.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297308050|gb|EFH38754.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/164 (59%), Positives = 125/164 (76%), Gaps = 4/164 (2%)

Query: 5   LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
           +L   + L SL  +VV      S LGVHPLDEKYF  ++IKCKDGSKSF++DRLNDNFCD
Sbjct: 1   MLLQCVVLCSLLAIVVVSVASISPLGVHPLDEKYFDSDIIKCKDGSKSFSKDRLNDNFCD 60

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
           C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTCV
Sbjct: 61  CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCV 120

Query: 125 MGGNIE--YKAQSYISTIND--AGSIDARGAKIPVNKEDLIERL 164
           MGGN+   YK ++ + +I+     ++  + +    N +D+++ L
Sbjct: 121 MGGNVNYIYKPRTNLKSIHFQLGSTLHPKESYTMGNLQDMVKNL 164

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510520|gb|AFK43326.1| unknown [Lotus japonicus]

 Score =  191 bits (485), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 88/110 (80%), Positives = 94/110 (85%)

Query: 27  SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGN 86
           SLLGVHPLDEKY+  EVIKCKDGSKSF+RD +NDNFCDC DGTDEPGTSACP GKFYC N
Sbjct: 28  SLLGVHPLDEKYYGSEVIKCKDGSKSFSRDHINDNFCDCPDGTDEPGTSACPKGKFYCKN 87

Query: 87  VGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSY 136
           +GS PQFIFSS VND  CDCCDGSDEYD +I CPNTCVMGGN EY   +Y
Sbjct: 88  LGSKPQFIFSSHVNDNFCDCCDGSDEYDGTIHCPNTCVMGGNSEYMIGNY 137

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	166
TAIR|locus:2053771	212	AT2G42390 "AT2G42390" [Arabido	0.975	0.764	0.616	1.5e-53
TAIR|locus:2161078	647	PSL4 "PRIORITY IN SWEET LIFE 4	0.650	0.166	0.631	5.7e-37
UNIPROTKB|K7EJ70	144	PRKCSH "Glucosidase 2 subunit	0.819	0.944	0.432	2.2e-27
UNIPROTKB|K7EKX1	140	PRKCSH "Glucosidase 2 subunit	0.819	0.971	0.432	2.2e-27
UNIPROTKB|K7EPW7	168	PRKCSH "Glucosidase 2 subunit	0.819	0.809	0.432	2.2e-27
ZFIN|ZDB-GENE-040426-770	529	prkcsh "protein kinase C subst	0.686	0.215	0.512	4.4e-27
MGI|MGI:107877	521	Prkcsh "protein kinase C subst	0.825	0.262	0.428	5.2e-27
RGD|1309628	525	Prkcsh "protein kinase C subst	0.795	0.251	0.445	7e-27
UNIPROTKB|P14314	528	PRKCSH "Glucosidase 2 subunit	0.819	0.257	0.432	7.2e-27
UNIPROTKB|K7ELL7	535	PRKCSH "Glucosidase 2 subunit	0.819	0.254	0.432	7.7e-27

TAIR|locus:2053771 AT2G42390 "AT2G42390" [Arabidopsis thaliana (taxid:3702)]

 Score = 554 (200.1 bits), Expect = 1.5e-53, P = 1.5e-53
 Identities = 103/167 (61%), Positives = 129/167 (77%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
             LL+ ++   SL  +V+ V   S L+GVHPLDEKYF  +VIKCKDGSKSFTRDRLNDNFCD
Sbjct:     2 LLQCVVLCSSLAVVVISVASTSPLVGVHPLDEKYFDSDVIKCKDGSKSFTRDRLNDNFCD 61

Query:    65 CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
             C+DGTDEPGTSACP GKFYC N+GS+P+F++SSRVNDRICDCCDGSDEY+SSI CPNTC+
Sbjct:    62 CLDGTDEPGTSACPNGKFYCRNIGSSPKFVYSSRVNDRICDCCDGSDEYESSIHCPNTCI 121

Query:   125 MGGNIEY--KAQSYISTIN-DAGSIDARGAKIPV-NKEDLIERL-GM 166
             MGGN+ Y  K ++ + +I+   GS         + N +D+++ L GM
Sbjct:   122 MGGNVNYIYKPRANLKSIHLQLGSTPHPKEFYTIGNLQDMVKNLQGM 168

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2161078 PSL4 "PRIORITY IN SWEET LIFE 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 402 (146.6 bits), Expect = 5.7e-37, P = 5.7e-37
 Identities = 72/114 (63%), Positives = 84/114 (73%)

Query:    29 LGVHPLDEKYF-SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNV 87
             LG+ P DEKY+ S   IKCKDGSK FT+ +LND+FCDC DGTDEPGTSACP GKFYC N 
Sbjct:    38 LGISPQDEKYYKSSSEIKCKDGSKKFTKAQLNDDFCDCSDGTDEPGTSACPTGKFYCRNA 97

Query:    88 GSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGG-----NIEYKAQSY 136
             G +P  +FSSRVND ICDCCDGSDEYD  + C NTC   G     N++ K ++Y
Sbjct:    98 GHSPVILFSSRVNDGICDCCDGSDEYDGHVSCQNTCWEAGKAARENLKKKIETY 151

GO:0009507 "chloroplast" evidence=ISM

GO:0005516 "calmodulin binding" evidence=TAS;IPI

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA

GO:0009086 "methionine biosynthetic process" evidence=RCA

GO:0030244 "cellulose biosynthetic process" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

GO:0005783 "endoplasmic reticulum" evidence=IDA

UNIPROTKB|K7EJ70 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0006491 "N-glycan processing" evidence=IEA

UNIPROTKB|K7EKX1 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0006491 "N-glycan processing" evidence=IEA

UNIPROTKB|K7EPW7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0006491 "N-glycan processing" evidence=IEA

ZFIN|ZDB-GENE-040426-770 prkcsh "protein kinase C substrate 80K-H" [Danio rerio (taxid:7955)]

 Score = 309 (113.8 bits), Expect = 4.4e-27, P = 4.4e-27
 Identities = 60/117 (51%), Positives = 76/117 (64%)

Query:    30 GVHPLDEKYFSKE--VIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNV 87
             GV PL +K F +E     C DGSK+   D++ND++CDC  G+DEPGT+ACP GKF+C N 
Sbjct:    27 GV-PLSKKPFYEENKPFTCLDGSKTILFDQVNDDYCDCKGGSDEPGTAACPNGKFHCTNA 85

Query:    88 GSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAG 144
             G  P FI SSR+ND ICDCCD +DEY+S  KC NTC   G  E +    ++ I   G
Sbjct:    86 GYKPTFIPSSRINDGICDCCDTTDEYNSGAKCENTCKELGRKEREVLQKMAEITKEG 142

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0048793 "pronephros development" evidence=IGI

GO:0005783 "endoplasmic reticulum" evidence=ISS

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

MGI|MGI:107877 Prkcsh "protein kinase C substrate 80K-H" [Mus musculus (taxid:10090)]

 Score = 308 (113.5 bits), Expect = 5.2e-27, P = 5.2e-27
 Identities = 60/140 (42%), Positives = 85/140 (60%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCD 64
             +L  L+ L+ LC+ V   + +   L  H   E+  SK    C DG+ +   D++ND++CD
Sbjct:     1 MLLLLLLLLPLCWAVEVKRPRGVSLSNHHFYEE--SKP-FTCLDGTATIPFDQVNDDYCD 57

Query:    65 CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCV 124
             C DG+DEPGT+ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC 
Sbjct:    58 CKDGSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCR 117

Query:   125 MGGNIEYKAQSYISTINDAG 144
               G  E ++   ++ +   G
Sbjct:   118 EKGRKEKESLQQLAEVTREG 137

GO:0001701 "in utero embryonic development" evidence=IMP

GO:0001889 "liver development" evidence=IGI

GO:0003723 "RNA binding" evidence=IDA

GO:0005080 "protein kinase C binding" evidence=ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0005783 "endoplasmic reticulum" evidence=TAS

GO:0006491 "N-glycan processing" evidence=TAS

GO:0006807 "nitrogen compound metabolic process" evidence=IGI

GO:0010977 "negative regulation of neuron projection development" evidence=IMP

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0017177 "glucosidase II complex" evidence=IPI

GO:0046872 "metal ion binding" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=ISO

GO:0072001 "renal system development" evidence=IGI

RGD|1309628 Prkcsh "protein kinase C substrate 80K-H" [Rattus norvegicus (taxid:10116)]

 Score = 307 (113.1 bits), Expect = 7.0e-27, P = 7.0e-27
 Identities = 61/137 (44%), Positives = 84/137 (61%)

Query:     9 LIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFCDCID 67
             L+ L+ LC+ V   + +  SL   H  DE   SK    C DG+ +   D++ND++CDC D
Sbjct:     4 LLLLLPLCWAVEVKRPRGVSLSNHHFYDE---SKP-FTCLDGTATIPFDQVNDDYCDCKD 59

Query:    68 GTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTCVMGG 127
             G+DEPGT+ACP G F+C N G  P +I SSRVND +CDCCDG+DEY+S   C NTC   G
Sbjct:    60 GSDEPGTAACPNGSFHCTNTGYKPLYILSSRVNDGVCDCCDGTDEYNSGTVCENTCREKG 119

Query:   128 NIEYKAQSYISTINDAG 144
               E ++   ++ +   G
Sbjct:   120 RKEKESLQQLAEVTREG 136

GO:0001701 "in utero embryonic development" evidence=ISO

GO:0001889 "liver development" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0003723 "RNA binding" evidence=IEA;ISO

GO:0005080 "protein kinase C binding" evidence=IEA;ISO

GO:0005509 "calcium ion binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005886 "plasma membrane" evidence=TAS

GO:0006491 "N-glycan processing" evidence=IEA

GO:0006807 "nitrogen compound metabolic process" evidence=ISO

GO:0010977 "negative regulation of neuron projection development" evidence=IEA;ISO

GO:0016301 "kinase activity" evidence=IEA

GO:0017177 "glucosidase II complex" evidence=ISO

GO:0051291 "protein heterooligomerization" evidence=IPI

GO:0072001 "renal system development" evidence=ISO

UNIPROTKB|P14314 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 7.2e-27, P = 7.2e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0010977 "negative regulation of neuron projection development" evidence=IEA

GO:0051291 "protein heterooligomerization" evidence=IEA

GO:0005622 "intracellular" evidence=NAS

GO:0007243 "intracellular protein kinase cascade" evidence=NAS

GO:0005080 "protein kinase C binding" evidence=IPI

GO:0005788 "endoplasmic reticulum lumen" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|K7ELL7 PRKCSH "Glucosidase 2 subunit beta" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 7.7e-27, P = 7.7e-27
 Identities = 61/141 (43%), Positives = 87/141 (61%)

Query:     5 LLRNLIPLMSLCFLVVFVQCKS-SLLGVHPLDEKYFSKEVIKCKDGSKSFTRDRLNDNFC 63
             +L  L+ L+ +C+ V   + +  SL   H  DE   SK    C DGS +   D++ND++C
Sbjct:     1 MLLPLLLLLPMCWAVEVKRPRGVSLTNHHFYDE---SKP-FTCLDGSATIPFDQVNDDYC 56

Query:    64 DCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPNTC 123
             DC DG+DEPGT+ACP G F+C N G  P +I S+RVND +CDCCDG+DEY+S + C NTC
Sbjct:    57 DCKDGSDEPGTAACPNGSFHCTNTGYKPLYIPSNRVNDGVCDCCDGTDEYNSGVICENTC 116

Query:   124 VMGGNIEYKAQSYISTINDAG 144
                G  E ++   ++ +   G
Sbjct:   117 KEKGRKERESLQQMAEVTREG 137

GO:0005509 "calcium ion binding" evidence=IEA

GO:0006491 "N-glycan processing" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	166
pfam12999	176	pfam12999, PRKCSH-like, Glucosidase II beta subuni	1e-29

>gnl|CDD|193472 pfam12999, PRKCSH-like, Glucosidase II beta subunit-like

 Score =  106 bits (265), Expect = 1e-29
 Identities = 60/160 (37%), Positives = 85/160 (53%), Gaps = 20/160 (12%)

Query: 9   LIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEV---IKCKDGSKSFTR-DRLNDNFCD 64
           L PL+++  LV        L GV P +   +  +     KC + S+     D++ND++CD
Sbjct: 2   LQPLLAISLLVA--IALGKLRGVSPDNLHLYQPDENGNWKCLNHSEIKLSFDQVNDDYCD 59

Query: 65  CIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICD---CCDGSDEYDSSIKCPN 121
           C DG+DEPGT+AC  GKFYC N G  P +I S +V+D +CD   CCDGSDE  +  KCPN
Sbjct: 60  CPDGSDEPGTNACSNGKFYCANEGFIPGYIPSFKVDDGVCDYDICCDGSDE--ALGKCPN 117

Query: 122 TCVMGGNIEYKAQSYISTINDAGSIDARGAKIPVNKEDLI 161
            C         A+ +   + +  +    G KI   KE L+
Sbjct: 118 KCGE------IARQFEEYLTEHNNSVKNGLKI---KEGLL 148

The sequences found in this family are similar to a region found in the beta-subunit of glucosidase II, which is also known as protein kinase C substrate 80K-H (PRKCSH). The enzyme catalyzes the sequential removal of two alpha-1,3-linked glucose residues in the second step of N-linked oligosaccharide processing. The beta subunit is required for the solubility and stability of the heterodimeric enzyme, and is involved in retaining the enzyme within the endoplasmic reticulum. Length = 176

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	166
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	99.97
KOG2397	480	consensus Protein kinase C substrate, 80 KD protei	99.81
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.1
PF00057	37	Ldl_recept_a: Low-density lipoprotein receptor dom	99.09
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.09
cd00112	35	LDLa Low Density Lipoprotein Receptor Class A doma	99.05
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.94
smart00192	33	LDLa Low-density lipoprotein receptor domain class	98.86
KOG1215	877	consensus Low-density lipoprotein receptors contai	98.13
KOG1215	877	consensus Low-density lipoprotein receptors contai	98.13
PF12999	176	PRKCSH-like: Glucosidase II beta subunit-like	97.86
KOG3509	964	consensus Basement membrane-specific heparan sulfa	95.27
KOG2397	480	consensus Protein kinase C substrate, 80 KD protei	94.93
PF07771	120	TSGP1: Tick salivary peptide group 1; InterPro: IP	85.79

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=99.97  E-value=5.9e-33  Score=225.25  Aligned_cols=141  Identities=48%  Similarity=0.868  Sum_probs=121.5

Q ss_pred             HHHHHHHHHHHHHhhhcCCcccCCCCCccCCCC---CceEeCCCCce-ecCCCCCCCCCCCCCCCCCCCCcCCCCCeeee
Q 031060            9 LIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSK---EVIKCKDGSKS-FTRDRLNDNFCDCIDGTDEPGTSACPAGKFYC   84 (166)
Q Consensus         9 ~~~~~~~~~~~~~~~~~~~~~Gv~p~~~~~~~p---~~F~C~~g~~C-Ip~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C   84 (166)
                      ++||++++++++.+  ..+++||+|+.+++|.|   +.|.|.+|++- |+.++++|++.||+|||||+++++|+.+.|||
T Consensus         2 ~~~~~~~~~~~~~~--~~~~~GV~p~~~~~Y~~~~~~~f~Cl~~~~~~I~~~~iNDdyCDC~DGSDEPGTsAC~~~~FyC   79 (176)
T PF12999_consen    2 LLPLIALSLLSASA--SSRIRGVSPSDQHLYEPSENGKFTCLDGSKIVIPFSQINDDYCDCPDGSDEPGTSACSNGKFYC   79 (176)
T ss_pred             cHHHHHHHHHHHhc--cCCCCCCCHHHHHHcCCCCCCceEecCCCCceecHHHccCcceeCCCCCCccccccCcCceEee
Confidence            57777765554444  55799999999999975   47999999876 99999999999999999999999999999999


Q ss_pred             cCCCCCceeccCCCccCCCCC---CCCCCCCCCCCCCCCccccCCChHHHHhhhccccccccCCcccccccCC
Q 031060           85 GNVGSTPQFIFSSRVNDRICD---CCDGSDEYDSSIKCPNTCVMGGNIEYKAQSYISTINDAGSIDARGAKIP  154 (166)
Q Consensus        85 ~ng~~~~~CI~~~~vCDG~~D---C~DGSDE~~~~~~C~~~C~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~  154 (166)
                      .|.||.|..||.++|-||+.|   |.|||||  ..+.|||+|.++++ +||..........+.|+++|..++.
T Consensus        80 ~N~g~~p~~i~~s~VnDGICDy~~CCDGSDE--~~~~C~N~C~e~~~-~~~~~~~~~~~~~~~G~~~r~~~i~  149 (176)
T PF12999_consen   80 ENKGHIPRYIPSSRVNDGICDYDICCDGSDE--SGGKCPNTCAELGK-EYREELEEEEEIYKEGLKIRQELIE  149 (176)
T ss_pred             ccCCCCCceeehhhhcCCcCcccccCCCCCC--CCCCCccHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999   9999999  45679999999998 6687776666777778777776643

>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]

Probab=99.81  E-value=2e-20  Score=170.06  Aligned_cols=109  Identities=53%  Similarity=1.008  Sum_probs=95.9

Q ss_pred             hhhcCCcccCCCC--CccCC-CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCC
Q 031060           22 VQCKSSLLGVHPL--DEKYF-SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSR   98 (166)
Q Consensus        22 ~~~~~~~~Gv~p~--~~~~~-~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~   98 (166)
                      |-..+.++||.-.  +...| +...|.|.+|++-|+.+++.|++.||.|||||++++.|+++.|||.|.||.+.-|+.+.
T Consensus        20 a~~~~~~~~v~~~~~~~~~y~as~~~~CLdgs~~i~f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssr   99 (480)
T KOG2397|consen   20 AKQLRKDWGVALSIENLYLYDASSMFKCLDGSKTISFSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSR   99 (480)
T ss_pred             hhccccccccccccccccccccccceeeccCCcccCHHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechh
Confidence            3334567777544  44444 46799999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCCCCCCCCccccCCChHH
Q 031060           99 VNDRICDCCDGSDEYDSSIKCPNTCVMGGNIE  130 (166)
Q Consensus        99 vCDG~~DC~DGSDE~~~~~~C~~~C~~~g~~~  130 (166)
                      |-||+.||.|||||..+++.|||+|.+.|.+.
T Consensus       100 V~DGICDCCDgSDE~~Sgv~c~ntC~e~gR~~  131 (480)
T KOG2397|consen  100 VNDGICDCCDGSDEYLSGVDCPNTCIELGRAA  131 (480)
T ss_pred             ccCcccccccCCCCccCCCCCcchHHHHHHHH
Confidence            99999999999999999899999999998744

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.10  E-value=6.5e-11  Score=73.88  Aligned_cols=35  Identities=57%  Similarity=0.914  Sum_probs=32.6

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|+.++|+|.++    .||+..++|||+.||.|||||.+
T Consensus         2 ~C~~~~f~C~~~----~CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    2 TCPPGEFRCGNG----QCIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             SSSTTEEEETTS----SEEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCcCCeeEcCCC----CEEChHHcCCCCCCCCCCccccc
Confidence            588999999998    79999999999999999999963

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>PF00057 Ldl_recept_a: Low-density lipoprotein receptor domain class A This prints entry is specific to LDL receptor; InterPro: IPR002172 The low-density lipoprotein receptor (LDLR) is the major cholesterol-carrying lipoprotein of plasma, acting to regulate cholesterol homeostasis in mammalian cells

Probab=99.09  E-value=7.6e-11  Score=73.55  Aligned_cols=33  Identities=27%  Similarity=0.616  Sum_probs=30.6

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      .+++|+|.++. ||+..|+|||+.||.|||||.+
T Consensus         4 ~~~~f~C~~~~-CI~~~~~CDg~~DC~dgsDE~~   36 (37)
T PF00057_consen    4 PPGEFRCGNGQ-CIPKSWVCDGIPDCPDGSDEQN   36 (37)
T ss_dssp             STTEEEETTSS-EEEGGGTTSSSCSSSSSTTTSS
T ss_pred             cCCeeEcCCCC-EEChHHcCCCCCCCCCCccccc
Confidence            47899999994 9999999999999999999975

The LDL receptor binds LDL and transports it into cells by acidic endocytosis. In order to be internalized, the receptor-ligand complex must first cluster into clathrin-coated pits. Once inside the cell, the LDLR separates from its ligand, which is degraded in the lysosomes, while the receptor returns to the cell surface []. The internal dissociation of the LDLR with its ligand is mediated by proton pumps within the walls of the endosome that lower the pH. The LDLR is a multi-domain protein, containing: The ligand-binding domain contains seven or eight 40-amino acid LDLR class A (cysteine-rich) repeats, each of which contains a coordinated calcium ion and six cysteine residues involved in disulphide bond formation []. Similar domains have been found in other extracellular and membrane proteins []. The second conserved region contains two EGF repeats, followed by six LDLR class B (YWTD) repeats, and another EGF repeat. The LDLR class B repeats each contain a conserved YWTD motif, and is predicted to form a beta-propeller structure []. This region is critical for ligand release and recycling of the receptor []. The third domain is rich in serine and threonine residues and contains clustered O-linked carbohydrate chains. The fourth domain is the hydrophobic transmembrane region. The fifth domain is the cytoplasmic tail that directs the receptor to clathrin-coated pits. LDLR is closely related in structure to several other receptors, including LRP1, LRP1b, megalin/LRP2, VLDL receptor, lipoprotein receptor, MEGF7/LRP4, and LRP8/apolipoprotein E receptor2); these proteins participate in a wide range of physiological processes, including the regulation of lipid metabolism, protection against atherosclerosis, neurodevelopment, and transport of nutrients and vitamins []. This entry represents the LDLR class A (cyateine-rich) repeat, which contains 6 disulphide-bound cysteines and a highly conserved cluster of negatively charged amino acids, of which many are clustered on one face of the module []. In LDL receptors, the class A domains form the binding site for LDL and calcium. The acidic residues between the fourth and sixth cysteines are important for high-affinity binding of positively charged sequences in LDLR's ligands. The repeat consists of a beta-hairpin structure followed by a series of beta turns. In the absence of calcium, LDL-A domains are unstructured; the bound calcium ion imparts structural integrity. Following these repeats is a 350 residue domain that resembles part of the epidermal growth factor (EGF) precursor. Numerous familial hypercholestorolemia mutations of the LDL receptor alter the calcium coordinating residue of LDL-A domains or other crucial scaffolding residues. ; GO: 0005515 protein binding; PDB: 2I1P_A 3OJY_A 4E0S_B 3T5O_A 4A5W_B 1JRF_A 1K7B_A 1V9U_5 3DPR_E 2KNY_A ....

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.09  E-value=5.8e-11  Score=72.99  Aligned_cols=32  Identities=28%  Similarity=0.577  Sum_probs=29.9

Q ss_pred             CCceEeCCCCceecCCCCCCCCCCCCCCCCCCC
Q 031060           41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        41 p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      +++|+|.++ .|||..++|||+.||+|||||.+
T Consensus         3 ~~~f~C~~~-~Ci~~~~~CDg~~DC~dgsDE~~   34 (35)
T cd00112           3 PNEFRCANG-RCIPSSWVCDGEDDCGDGSDEEN   34 (35)
T ss_pred             CCeEEcCCC-CeeCHHHcCCCccCCCCCccccc
Confidence            589999997 79999999999999999999985

>cd00112 LDLa Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about 40 amino acids are present in the N-terminal of this multidomain membrane protein; other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement; the binding of calcium is required for in vitro formation of the native disulfide isomer and is necessary in establishing and maintaining the modular structure

Probab=99.05  E-value=8.5e-11  Score=72.25  Aligned_cols=33  Identities=52%  Similarity=0.759  Sum_probs=31.0

Q ss_pred             CCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (166)
Q Consensus        77 C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~  113 (166)
                      |++.+|+|.++    .||+..++|||+.||.|||||.
T Consensus         1 C~~~~f~C~~~----~Ci~~~~~CDg~~DC~dgsDE~   33 (35)
T cd00112           1 CPPNEFRCANG----RCIPSSWVCDGEDDCGDGSDEE   33 (35)
T ss_pred             CCCCeEEcCCC----CeeCHHHcCCCccCCCCCcccc
Confidence            66789999997    8999999999999999999997

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.94  E-value=5.6e-10  Score=67.64  Aligned_cols=32  Identities=53%  Similarity=0.909  Sum_probs=29.9

Q ss_pred             CCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCC
Q 031060           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE  112 (166)
Q Consensus        77 C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE  112 (166)
                      |+..+|+|.++    .||+..++|||+.||.|||||
T Consensus         2 C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        2 CPPGEFQCDNG----RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCCCeEECCCC----CEECchhhCCCcCcCcCCCCC
Confidence            66779999987    799999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>smart00192 LDLa Low-density lipoprotein receptor domain class A

Probab=98.86  E-value=1.8e-09  Score=65.44  Aligned_cols=30  Identities=30%  Similarity=0.646  Sum_probs=27.8

Q ss_pred             CCceEeCCCCceecCCCCCCCCCCCCCCCCC
Q 031060           41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE   71 (166)
Q Consensus        41 p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE   71 (166)
                      +++|+|.++ .|||..++|||+.||+|||||
T Consensus         4 ~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE   33 (33)
T smart00192        4 PGEFQCDNG-RCIPLSWVCDGVDDCSDGSDE   33 (33)
T ss_pred             CCeEECCCC-CEECchhhCCCcCcCcCCCCC
Confidence            458999988 599999999999999999998

Cysteine-rich repeat in the low-density lipoprotein (LDL) receptor that plays a central role in mammalian cholesterol metabolism. The N-terminal type A repeats in LDL receptor bind the lipoproteins. Other homologous domains occur in related receptors, including the very low-density lipoprotein receptor and the LDL receptor-related protein/alpha 2-macroglobulin receptor, and in proteins which are functionally unrelated, such as the C9 component of complement. Mutations in the LDL receptor gene cause familial hypercholesterolemia.

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=98.13  E-value=2.8e-06  Score=82.03  Aligned_cols=83  Identities=25%  Similarity=0.416  Sum_probs=67.7

Q ss_pred             cccCCCCCccCC-----CCCceEeCCCCceecCCCCCCCCCCCCCCCCCC--CC--cCCCCCeeeecCCCCCceeccCCC
Q 031060           28 LLGVHPLDEKYF-----SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEP--GT--SACPAGKFYCGNVGSTPQFIFSSR   98 (166)
Q Consensus        28 ~~Gv~p~~~~~~-----~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~--~c--~~C~~~~F~C~ng~~~~~CI~~~~   98 (166)
                      ..|.++.....|     ....++|..+..||...+.|||..||.+++||.  .+  ..|...++.|.++    .|++..+
T Consensus       202 ~~~~d~~~~~~~~~~~~~~~~~~c~g~~~~i~~~~~~Dg~~dc~~~~de~~~~~~~~~~~~~e~~~~~~----~~~~~~~  277 (877)
T KOG1215|consen  202 ADDYDESEGRIYWTDDSRIEVTRCDGSSRCILISEVCDGPRDCVDGPDEGVMNCSDATCEAPEIECADG----DCSDRQK  277 (877)
T ss_pred             ccccccccCcccccCCcceeEEEecCCCcEEeehhccCCCcccccCCcCceeEeeccccCCcceeecCC----CCccceE
Confidence            344555555444     146789988668999999999999999999994  33  2677889999888    8999999


Q ss_pred             ccCCCCCCCCCCCCCC
Q 031060           99 VNDRICDCCDGSDEYD  114 (166)
Q Consensus        99 vCDG~~DC~DGSDE~~  114 (166)
                      .|||..||+||+||..
T Consensus       278 ~~~g~~d~pdg~de~~  293 (877)
T KOG1215|consen  278 LCDGDLDCPDGLDEDY  293 (877)
T ss_pred             EecCccCCCCcccccc
Confidence            9999999999999973

>KOG1215 consensus Low-density lipoprotein receptors containing Ca2+-binding EGF-like domains [Signal transduction mechanisms]

Probab=98.13  E-value=2e-06  Score=83.02  Aligned_cols=69  Identities=33%  Similarity=0.539  Sum_probs=56.6

Q ss_pred             CCceEeC--CCCceecCCCCCCCCCCCCCCCCCCCCcC------------------------C-----------------
Q 031060           41 KEVIKCK--DGSKSFTRDRLNDNFCDCIDGTDEPGTSA------------------------C-----------------   77 (166)
Q Consensus        41 p~~F~C~--~g~~CIp~~~vCDG~~DC~DGSDE~~c~~------------------------C-----------------   77 (166)
                      +.+|.|.  +. +|||..|+|||..||.||+||..+..                        |                 
T Consensus       140 ~~~~~c~~~~~-~Cip~~~~cd~~~~C~dg~de~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~  218 (877)
T KOG1215|consen  140 LDKFSCRTGSC-KCIPGDWLCDGEADCPDGSDELNCAVRRCEPRGASLDCIVAIKVCDIQHDCADDYDESEGRIYWTDDS  218 (877)
T ss_pred             CCCCCCcCccc-cCCCCceeCCCCCccccchhhhcccccccCccccccccceeeeecCcccccccccccccCcccccCCc
Confidence            6789999  44 79999999999999999999987530                        0                 


Q ss_pred             CCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060           78 PAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (166)
Q Consensus        78 ~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~  113 (166)
                      ....++|.++.   .||..++.|||..||.|++||.
T Consensus       219 ~~~~~~c~g~~---~~i~~~~~~Dg~~dc~~~~de~  251 (877)
T KOG1215|consen  219 RIEVTRCDGSS---RCILISEVCDGPRDCVDGPDEG  251 (877)
T ss_pred             ceeEEEecCCC---cEEeehhccCCCcccccCCcCc
Confidence            02456666542   8999999999999999999994

>PF12999 PRKCSH-like: Glucosidase II beta subunit-like

Probab=97.86  E-value=6.2e-06  Score=67.56  Aligned_cols=39  Identities=44%  Similarity=0.732  Sum_probs=30.8

Q ss_pred             CCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCCCCCCC
Q 031060           79 AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP  120 (166)
Q Consensus        79 ~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~~~~C~  120 (166)
                      ++.|+|-++..  .-|+.++++|++.||+|||||..+ ..|+
T Consensus        35 ~~~f~Cl~~~~--~~I~~~~iNDdyCDC~DGSDEPGT-sAC~   73 (176)
T PF12999_consen   35 NGKFTCLDGSK--IVIPFSQINDDYCDCPDGSDEPGT-SACS   73 (176)
T ss_pred             CCceEecCCCC--ceecHHHccCcceeCCCCCCcccc-ccCc
Confidence            46799998841  338999999999999999999853 2454

>KOG3509 consensus Basement membrane-specific heparan sulfate proteoglycan (HSPG) core protein [Posttranslational modification, protein turnover, chaperones]

Probab=95.27  E-value=0.02  Score=57.22  Aligned_cols=74  Identities=24%  Similarity=0.334  Sum_probs=64.2

Q ss_pred             cCCCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc------CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCC
Q 031060           37 KYFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS------ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGS  110 (166)
Q Consensus        37 ~~~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~------~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGS  110 (166)
                      +..+|++|+|.++ ++.-..+.||...+|.+++++.++.      .|.+..+.|.+--   ++.+.+..|||..||.|++
T Consensus        30 ~~~~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~c~~~~---~~~~~~~~~~g~~~~~~~~  105 (964)
T KOG3509|consen   30 SACSPNEFKCNNP-RCVQPEALLDADSTCGPNSTPSGCNAKPSASDCKPTETQCRDRL---RCNPQSFQCDGTNDCKDGS  105 (964)
T ss_pred             ccCCcchhccCCc-cccCchhhhccccccCCCCCcCCccccccccccCCcccccccch---hcCCccccccCCCCCCccc
Confidence            4556899999998 7999999999999999999887752      5778889998762   7889999999999999999


Q ss_pred             CCCC
Q 031060          111 DEYD  114 (166)
Q Consensus       111 DE~~  114 (166)
                      +|..
T Consensus       106 ~~~~  109 (964)
T KOG3509|consen  106 DEVG  109 (964)
T ss_pred             hhcc
Confidence            9976

>KOG2397 consensus Protein kinase C substrate, 80 KD protein, heavy chain [Signal transduction mechanisms]

Probab=94.93  E-value=0.01  Score=55.31  Aligned_cols=58  Identities=26%  Similarity=0.393  Sum_probs=43.0

Q ss_pred             HHHHHhhhcCCcccCCCCCccCCCCCceEeCCCC---ceecCCCCCCCCCCCCCCCCCCCC
Q 031060           17 FLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKDGS---KSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        17 ~~~~~~~~~~~~~Gv~p~~~~~~~p~~F~C~~g~---~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      |+-+....--.+-|++.---+.+..+.|.|.|.+   .-|+.+.|-||+.||=|||||...
T Consensus        56 f~qlNDd~CDC~DGsDEPGtsACpngkF~C~N~G~~p~~i~ssrV~DGICDCCDgSDE~~S  116 (480)
T KOG2397|consen   56 FSQLNDDSCDCLDGSDEPGTSACPNGKFYCVNQGHQPKYIPSSRVNDGICDCCDGSDEYLS  116 (480)
T ss_pred             HHHhccccccCCCCCCCCccccCCCCceeeeecCCCceeeechhccCcccccccCCCCccC
Confidence            4555555555677876532345556889998643   679999999999999999999764

>PF07771 TSGP1: Tick salivary peptide group 1; InterPro: IPR011694 This entry contains a group of peptides derived from a salivary gland cDNA library of the tick Ixodes scapularis (Black-legged tick) []

Probab=85.79  E-value=2.4  Score=32.87  Aligned_cols=45  Identities=18%  Similarity=0.149  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhcCCcccCCCCCccCCCCCceEeCC
Q 031060            3 MELLRNLIPLMSLCFLVVFVQCKSSLLGVHPLDEKYFSKEVIKCKD   48 (166)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gv~p~~~~~~~p~~F~C~~   48 (166)
                      |.+.-++|+||.|.|+.. ++++..+.+.-|.....-+.-.|.|.+
T Consensus         1 m~~~~~~~vlv~la~~~~-~~~~~Cp~~~r~~~~~~~~~C~YYC~~   45 (120)
T PF07771_consen    1 MGLTVVTLVLVSLAFFGS-AAAHGCPDKTRPASDTNREGCNYYCWN   45 (120)
T ss_pred             CcceeehhhHHhHHhhhh-hhhhcCCCCCcCCCCCCCCCcEEEcCC
Confidence            566667788887744444 455667888776655443345688875

Also present are peptides from a related tick species, Ixodes ricinus (Sheep tick). They are characterised by a putative signal peptide, indicative of secretion, and conserved cysteine residues.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	166
2xrc_A	565	Human complement factor I; immune system, hydrolas	6e-05
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	1e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	4e-04
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	9e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	2e-04
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	5e-04
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	3e-04

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens} Length = 565

 Score = 41.1 bits (96), Expect = 6e-05
 Identities = 18/76 (23%), Positives = 25/76 (32%), Gaps = 9/76 (11%)

Query: 44  IKCKDGSKSFTR----DRLNDNFCDCIDGTDEPGTSACPAG-KFYCGNVGSTPQFIFSSR 98
           + C+    S        R    + D  D       +  P    F C N     ++I   +
Sbjct: 166 VHCRGLETSLAECTFTKRRTMGYQDFADVVCYTQKADSPMDDFFQCVN----GKYISQMK 221

Query: 99  VNDRICDCCDGSDEYD 114
             D I DC D SDE  
Sbjct: 222 ACDGINDCGDQSDELC 237

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 40.6 bits (94), Expect = 1e-04
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 60  DNFCDCIDGTDEPGTS----ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115
           D   +C DG+DE   +     C +G F CG      + I      D   DC +GSDE   
Sbjct: 44  DGSAECQDGSDESQETCLSVTCKSGDFSCGG--RVNRCIPQFWRCDGQVDCDNGSDEQG- 100

Query: 116 SIKCPNTC 123
              CP   
Sbjct: 101 ---CPPKT 105

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 45  KCKDGSKSFTRDRLNDNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDR 102
           +C DG K  +R  + D+  DC+DG+DE       C    F C +       I      D 
Sbjct: 112 RCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS----STCIPQLWACDN 166

Query: 103 ICDCCDGSDEYDSSIKCPNTC 123
             DC DGSDE+    +     
Sbjct: 167 DPDCEDGSDEWPQRCRGLYVF 187

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 39.0 bits (90), Expect = 4e-04
 Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 6/67 (8%)

Query: 55  RDRLNDNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE 112
           +    D   DC +G+DE G     C   +F C +     + I    V D   DC DGSDE
Sbjct: 82  QFWRCDGQVDCDNGSDEQGCPPKTCSQDEFRCHD----GKCISRQFVCDSDRDCLDGSDE 137

Query: 113 YDSSIKC 119
               +  
Sbjct: 138 ASCPVLT 144

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} Length = 791

 Score = 37.9 bits (87), Expect = 9e-04
 Identities = 21/66 (31%), Positives = 25/66 (37%), Gaps = 8/66 (12%)

Query: 60  DNFCDCIDGTDEPG--TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSI 117
           D   DC D +DE     + C   +F C +       I  SR  DR  DC D SDE     
Sbjct: 214 DGGPDCKDKSDEENCAVATCRPDEFQCSDG----NCIHGSRQCDREYDCKDMSDEVG--C 267

Query: 118 KCPNTC 123
                C
Sbjct: 268 VNVTLC 273

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 7/81 (8%)

Query: 45  KCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSA--CPAGKFYCGNVGSTPQFIFSSRVNDR 102
           +C DG K  +R  + D+  DC+DG+DE       C    F C +       I      D 
Sbjct: 94  RCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNS----STCIPQLWACDN 148

Query: 103 ICDCCDGSDEYDSSIKCPNTC 123
             DC DGSDE+    +     
Sbjct: 149 DPDCEDGSDEWPQRCRGLYVF 169

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 39.4 bits (91), Expect = 2e-04
 Identities = 21/68 (30%), Positives = 27/68 (39%), Gaps = 10/68 (14%)

Query: 60  DNFCDCIDGTDEPG----TSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS 115
           D   +C DG+DE      +  C +G F CG      + I      D   DC +GSDE   
Sbjct: 26  DGSAECQDGSDESQETCLSVTCKSGDFSCGG--RVNRCIPQFWRCDGQVDCDNGSDEQG- 82

Query: 116 SIKCPNTC 123
              CP   
Sbjct: 83  ---CPPKT 87

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A Length = 699

 Score = 38.6 bits (89), Expect = 5e-04
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 10/75 (13%)

Query: 60  DNFCDCIDGTDEP--GTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSI 117
           D   DC D +DE     + C   +F C +       I  SR  DR  DC D SDE     
Sbjct: 196 DGGPDCKDKSDEENCAVATCRPDEFQCSDG----NCIHGSRQCDREYDCKDMSDEVG--- 248

Query: 118 KCPNTCVMGGNIEYK 132
            C N  +  G  ++K
Sbjct: 249 -CVNVTLCEGPNKFK 262

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B Length = 82

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 18/59 (30%), Positives = 23/59 (38%), Gaps = 8/59 (13%)

Query: 60  DNFCDCIDGTDE----PGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD 114
           D   DC D +DE       +  P  +F C N     + I  +   D   DC D SDE  
Sbjct: 25  DLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDNDCGDNSDEAG 79

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	166
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	99.88
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	99.88
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.67
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.66
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	99.65
2xrc_A	565	Human complement factor I; immune system, hydrolas	99.58
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	99.58
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.22
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.19
1ajj_A	37	LR5, low-density lipoprotein receptor; LDL recepto	99.16
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.16
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.15
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	99.15
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.14
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.14
3dpr_E	39	LDL-receptor class A 3; human rhinovirus, VLDL-rec	99.14
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.13
1d2l_A	45	Lipoprotein receptor related protein; ligand bindi	99.13
2jm4_A	43	Relaxin receptor 1; LDL-A module, RXFP1 receptor,	99.13
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	99.12
1cr8_A	42	Protein (LOW density lipoprotein receptor related	99.12
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.11
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	99.11
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.11
2m0p_A	52	Low-density lipoprotein receptor-related protein;	99.1
3a7q_B	44	Low-density lipoprotein receptor-related protein;	99.09
2kny_A	80	LRP-1, linker, APO-E; lipoprotein receptor, ligand	99.08
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	99.07
1k7b_A	47	Subgroup A ROUS sarcoma virus receptor PG800 and P	99.05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.05
1jrf_A	47	TVA LDL-A module, subgroup A ROUS sarcoma virus re	99.01
2knx_A	50	Prolow-density lipoprotein receptor-related prote;	98.99
2i1p_A	48	Low-density lipoprotein receptor-related protein 2	98.98
1j8e_A	44	Low-density lipoprotein receptor-related protein 1	98.98
2gtl_O	215	Extracellular hemoglobin linker L3 subunit; anneli	98.95
2fyj_A	82	Low-density lipoprotein receptor-related protein 1	98.95
2fcw_B	80	LDL receptor, low-density lipoprotein receptor; pr	98.84
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.77
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.76
2xrc_A	565	Human complement factor I; immune system, hydrolas	98.66
2gtl_M	217	Hemoglobin linker chain L1; annelid erythrocruorin	98.62
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.46
2gtl_N	220	Extracellular hemoglobin linker L2 subunit; anneli	98.44
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.41
3ojy_B	537	Complement component C8 beta chain; macpf, lipocal	98.25
3ojy_A	554	Complement component C8 alpha chain; macpf, lipoca	98.09
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.58
3t5o_A	913	Complement component C6; macpf, MAC, membrane atta	97.51

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=99.88  E-value=5.3e-23  Score=146.55  Aligned_cols=71  Identities=28%  Similarity=0.398  Sum_probs=64.6

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCC-CCCc--CCCC-CeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE-PGTS--ACPA-GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE-~~c~--~C~~-~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      ..+++|+|.+| +|||.+|+|||+.||.||||| .+|.  .|.+ .+|+|.++    +||+..|+|||+.||.|||||.+
T Consensus         5 C~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~~C~~~~C~~~~~f~C~~g----~CI~~~~~CDG~~DC~DgSDE~~   79 (82)
T 2fyj_A            5 CPPNQFSCASG-RCIPISWTCDLDDDCGDRSDESASCAYPTCFPLTQFTCNNG----RCININWRCDNDNDCGDNSDEAG   79 (82)
T ss_dssp             SCTTEEETTSS-CEEETTSSSSCSSSSCSTTTTTSSCCCSSSCSSSEEECTTS----CEEETTCBSSSSBCCSSSSSCSC
T ss_pred             CCCCceEeCCC-CEEeccccCCCcccCCCccccccccccccCCCCCceECCCC----CeEcHHHccCCCCcCCCCccccC
Confidence            35789999998 699999999999999999999 6764  6854 99999998    89999999999999999999974

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=99.88  E-value=2.1e-23  Score=148.48  Aligned_cols=69  Identities=36%  Similarity=0.660  Sum_probs=64.9

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~  113 (166)
                      .+++|+|.+| +|||.+|+|||+.||.|||||.+|.  .|++.+|+|.++    .|||..|+|||+.||.|||||.
T Consensus         4 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C~~~~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~   74 (80)
T 2fcw_B            4 SQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEW   74 (80)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTHHHHHCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGC
T ss_pred             CCCccCCCCC-CEEeeecccCCcccCCCcccccccccccCCceeeECCCC----CEEecccccCCCcCCCCCCCcC
Confidence            5789999998 6999999999999999999999975  699999999998    8999999999999999999995

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.67  E-value=6.4e-17  Score=149.56  Aligned_cols=69  Identities=36%  Similarity=0.650  Sum_probs=61.2

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDE  112 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE  112 (166)
                      +.+++|+|.+| +||+..|+|||..||.|||||.+|.  .|++.+|+|.++    .||+..|+|||..||.|||||
T Consensus        88 C~~~~f~C~~g-~Ci~~~~~Cdg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE  158 (699)
T 1n7d_A           88 CSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDE  158 (699)
T ss_dssp             CCSSCCCSSCC-----CCCTTCSSCCSSSSCSSSSCCCCCCCSSCCCCSSS----CCCCTTSTTCSSCCSSSSSSS
T ss_pred             cccCcEEcCCC-CEecHHHcCCCcCcCCCCCccCCcCccccCccccCCCCC----cccchhcccCCCCcCCCCccc
Confidence            45789999998 6999999999999999999999875  699999999988    899999999999999999999

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.66  E-value=7.4e-18  Score=159.22  Aligned_cols=73  Identities=32%  Similarity=0.577  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC--Cc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG--TS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~--c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      +.+++|+|.+| +||+..|+|||..||.|||||.+  |.  .|++.+|+|.++.  .+|||..|+|||..||.|||||.+
T Consensus        24 C~~~~f~C~~g-~Ci~~~~~CDg~~dC~D~sDE~~~~C~~~~C~~~~f~C~~~~--~~Ci~~~~~CDg~~dC~dgsDE~~  100 (791)
T 3m0c_C           24 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQETCLSVTCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG  100 (791)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcCccCCCCC-CEEehhhcCCCCccCCCCCcccccccccCccCcCccccCCCC--CCEeeccccCCCCcCcCCCcccCC
Confidence            45789999998 79999999999999999999987  43  6999999999820  189999999999999999999985

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=99.65  E-value=1.8e-16  Score=146.53  Aligned_cols=82  Identities=29%  Similarity=0.342  Sum_probs=69.9

Q ss_pred             ccCCCCCcc--CCCCCceEeCCCCceecCCCCCCCCCCCCCCCCC--CCCc----------CCCCCeeeecCCCCCceec
Q 031060           29 LGVHPLDEK--YFSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDE--PGTS----------ACPAGKFYCGNVGSTPQFI   94 (166)
Q Consensus        29 ~Gv~p~~~~--~~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE--~~c~----------~C~~~~F~C~ng~~~~~CI   94 (166)
                      .|.++....  .+.+.+|+|.++ +|||..|+|||..||.|||||  .+|.          .|++.+|+|.++    .||
T Consensus       115 dgsDE~~C~~~~C~~~~f~C~~~-~Ci~~~~~Cdg~~dC~dgsDE~~~~C~~~~~~~~~~~~C~~~~f~C~~g----~Ci  189 (699)
T 1n7d_A          115 DGSDEASCPVLTCGPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWPQRCRGLYVFQGDSSPCSAFEFHCLSG----ECI  189 (699)
T ss_dssp             SSCSSSSCCCCCCCSSCCCCSSS-CCCCTTSTTCSSCCSSSSSSSSCSSSSCCCCCSSCCCCSCSSSCCCSSS----CCC
T ss_pred             CCCccCCcCccccCccccCCCCC-cccchhcccCCCCcCCCCcccccccCCCcccccCCCCCCCCcceecCCC----ceE
Confidence            454554432  345789999988 699999999999999999999  6663          688999999998    899


Q ss_pred             cCCCccCCCCCCCCCCCCCCC
Q 031060           95 FSSRVNDRICDCCDGSDEYDS  115 (166)
Q Consensus        95 ~~~~vCDG~~DC~DGSDE~~~  115 (166)
                      +.+|+|||..||.|||||.+.
T Consensus       190 ~~~~~CDg~~dC~dgsDE~~C  210 (699)
T 1n7d_A          190 HSSWRCDGGPDCKDKSDEENC  210 (699)
T ss_dssp             STTCTTSSSCCSTTSCSSCSC
T ss_pred             echhccCCCCCCCCCcccccC
Confidence            999999999999999999863

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=99.58  E-value=1e-15  Score=139.31  Aligned_cols=69  Identities=29%  Similarity=0.479  Sum_probs=63.3

Q ss_pred             CCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        41 p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .++|+|.++ .||+..|+|||..||+|||||.+|..|++.+|+|.++    .||+..++|||..||.|||||.+
T Consensus       206 ~~~~~C~~~-~ci~~~~~Cdg~~dC~d~sDE~~C~~c~~~~~~C~~~----~C~~~~~~cdG~~dC~~gsDE~~  274 (565)
T 2xrc_A          206 DDFFQCVNG-KYISQMKACDGINDCGDQSDELCCKACQGKGFHCKSG----VCIPSQYQCNGEVDCITGEDEVG  274 (565)
T ss_dssp             ---CBCTTS-CBCCTTSTTSSSCCSSSSSSSSSBSSCSSSCEEETTT----EEECGGGTTSSSCCSSSCTTSSS
T ss_pred             cCeeECCCC-CccCHHHcCCCcccCCCCcccccccccCCCceecCCC----cccCccccCCCcccCCCCccccC
Confidence            346999988 6999999999999999999999998899999999998    89999999999999999999975

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=99.58  E-value=1.4e-16  Score=150.61  Aligned_cols=71  Identities=35%  Similarity=0.647  Sum_probs=0.0

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      +.+++|+|.+| +||+..|+|||..||.|||||.+|.  .|++.+|+|.++    .||+..|+|||..||.|||||..
T Consensus       106 C~~~~f~C~~g-~Ci~~~~~CDg~~dC~dgsDE~~C~~~~C~~~~f~C~~~----~Ci~~~~~Cdg~~dC~dgsDE~~  178 (791)
T 3m0c_C          106 CSQDEFRCHDG-KCISRQFVCDSDRDCLDGSDEASCPVLTCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEWP  178 (791)
T ss_dssp             ------------------------------------------------------------------------------
T ss_pred             ccCCeEECCCC-CEECHHHcCCCcccCCCCcccccccccccccceeccCCC----ccccccccCCCCCcCCCCCCccc
Confidence            35789999998 6999999999999999999999875  699999999998    89999999999999999999963

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.22  E-value=2.5e-12  Score=91.38  Aligned_cols=59  Identities=19%  Similarity=0.113  Sum_probs=48.2

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC---C---cCCCCCeeeecC--CCCCceeccCCCccC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG---T---SACPAGKFYCGN--VGSTPQFIFSSRVND  101 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~---c---~~C~~~~F~C~n--g~~~~~CI~~~~vCD  101 (166)
                      ..+++|+|.++.+|||.+|+|||+.||.|||||..   |   ..|.+..|+|.+  +    .||+..+...
T Consensus         9 C~~~~f~C~~~g~CIp~~~~CDg~~DC~DgsDE~~~~~C~~~~~C~~~~f~c~~~~~----~ci~~~~~gL   75 (80)
T 2kny_A            9 CGPSSFSCPGTHVCVPERWLCDGDKDCADGADESIAAGCLYNSTGSGSGSGSTEELR----VRLASHLRKL   75 (80)
T ss_dssp             CSSSEEECTTSSCEEEHHHHTTSSCCSSSSTTTSGGGTCSSSSTTTTCSSCHHHHHH----HHTTTTTTTT
T ss_pred             CCCCceecCCCCeEcChhhcCCCCCCCCCCCccccccCCCCCcccCcccchhhhHHH----HHHHHHHHHH
Confidence            45789999854479999999999999999999984   3   257788999988  5    6888776543

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.19  E-value=8.2e-12  Score=76.53  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.2

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+| +||+.+|+|||..||.|||||.+|
T Consensus         3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~DgsDE~~C   36 (37)
T 1ajj_A            3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCceEcCCC-CeechhhccCCCCCCCCCccccCC
Confidence            4689999998 799999999999999999999874

>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1

Probab=99.16  E-value=1.2e-11  Score=75.71  Aligned_cols=34  Identities=41%  Similarity=0.459  Sum_probs=32.0

Q ss_pred             CCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        77 C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      |++.+|+|.++    .||+..|+|||+.||.|||||.+
T Consensus         2 C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~   35 (37)
T 1ajj_A            2 CSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCceEcCCC----CeechhhccCCCCCCCCCccccC
Confidence            78899999998    89999999999999999999974

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.16  E-value=2.5e-11  Score=76.31  Aligned_cols=35  Identities=20%  Similarity=0.362  Sum_probs=31.0

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+..+|||..|+|||..||.|||||.+|
T Consensus         5 ~~~~F~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   39 (42)
T 1cr8_A            5 HTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             STTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCCceEeCCCCeEcChhhcCCCCcCCCCCCcccCC
Confidence            46899998633799999999999999999999874

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.15  E-value=2.8e-11  Score=76.47  Aligned_cols=36  Identities=19%  Similarity=0.232  Sum_probs=31.7

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      ..+++|+|.++.+|||..|+|||+.||.|||||.+|
T Consensus         7 C~~~~f~C~~~g~CI~~~~~CDg~~DC~DgSDE~~C   42 (43)
T 2jm4_A            7 CSLGYFPCGNITKCLPQLLHCNGVDDCGNQADEDNC   42 (43)
T ss_dssp             CCTTEEECSSSSCEEEGGGTTSSCCCSSSCCTTSSC
T ss_pred             CCCCeeECCCCCeEcCHhhccCCCCCCCCCcccCCC
Confidence            346899999933799999999999999999999874

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=99.15  E-value=2.1e-11  Score=79.70  Aligned_cols=39  Identities=26%  Similarity=0.418  Sum_probs=34.3

Q ss_pred             CCCCceEeC-CCCceecCCCCCCCCCCCCCCCCCCCCcCCC
Q 031060           39 FSKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACP   78 (166)
Q Consensus        39 ~~p~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~   78 (166)
                      ..+++|+|. ++ +|||..|+|||..||.|||||..|..|+
T Consensus         7 C~~~~F~C~~~g-~CI~~~~~CDG~~DC~DgSDE~~C~~C~   46 (50)
T 2knx_A            7 CGPSSFSCPGTH-VCVPERWLCDGDKDCADGADESIAAGCL   46 (50)
T ss_dssp             TCTTEEEETTTT-EEEETTTTTSSSCCSTTCGGGSGGGTCC
T ss_pred             CCCCcEEcCCCC-eEcChhhcCCCCCCCCCCCccccccCCC
Confidence            357899996 66 8999999999999999999999876675

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.14  E-value=2.3e-11  Score=75.40  Aligned_cols=34  Identities=35%  Similarity=0.508  Sum_probs=31.3

Q ss_pred             CCCCeeeecC--CCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           77 CPAGKFYCGN--VGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        77 C~~~~F~C~n--g~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      |++.+|+|.+  +    .|||.+|+|||+.||.|||||.+
T Consensus         1 C~~~~f~C~~~~g----~Cip~~~~CDg~~DC~dgsDE~~   36 (39)
T 3dpr_E            1 CRIHEISCGAHST----QCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTTCCCSSSSS----CCCCTTSSSSSSCCSTTTTTSTT
T ss_pred             CCCCceecCCCCC----CEeCccccCCCcccCcCCccccc
Confidence            6788999998  4    89999999999999999999974

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.14  E-value=2.7e-11  Score=76.85  Aligned_cols=35  Identities=23%  Similarity=0.439  Sum_probs=31.8

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      ..+++|+|.++ +|||..|+|||+.||.|||||.+|
T Consensus         8 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgSDE~~C   42 (44)
T 3a7q_B            8 CEKDQFQCRNE-RCIPSVWRCDEDDDCLDHSDEDDC   42 (44)
T ss_dssp             CCTTEEECTTS-CEEEGGGTTSSSCCSSSSTTTSCC
T ss_pred             CCCCceEcCCC-CEeChhhccCCCCCCCCCccccCC
Confidence            34689999998 799999999999999999999874

>3dpr_E LDL-receptor class A 3; human rhinovirus, VLDL-receptor, virus-protein complex, icosahedral virus, ATP-binding, capsid protein; HET: DAO; 3.50A {Homo sapiens} PDB: 1v9u_5*

Probab=99.14  E-value=2.5e-11  Score=75.22  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=30.9

Q ss_pred             CCCceEeCC-CCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~-g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+ ..+|||.+|+|||+.||.|||||.+|
T Consensus         2 ~~~~f~C~~~~g~Cip~~~~CDg~~DC~dgsDE~~C   37 (39)
T 3dpr_E            2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             CTTTCCCSSSSSCCCCTTSSSSSSCCSTTTTTSTTC
T ss_pred             CCCceecCCCCCCEeCccccCCCcccCcCCcccccC
Confidence            368999998 23799999999999999999999874

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.13  E-value=3.4e-11  Score=77.10  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=31.6

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+| +|||.+|+|||+.||.|||||..+
T Consensus         7 ~~~~F~C~~g-~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            7 QPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             TBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCCceEcCCC-CeEehhhccCCCCCCCCCCCCCCC
Confidence            4689999998 799999999999999999999874

>1d2l_A Lipoprotein receptor related protein; ligand binding, calcium binding, complement-like repeat, signaling protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.13  E-value=3.3e-11  Score=77.16  Aligned_cols=36  Identities=36%  Similarity=0.579  Sum_probs=33.5

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~  115 (166)
                      .|++.+|+|.++    .||+..|+|||+.||.|||||...
T Consensus         5 ~C~~~~F~C~~g----~CI~~~~~CDG~~DC~DgSDE~~c   40 (45)
T 1d2l_A            5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCCCceEcCCC----CeEehhhccCCCCCCCCCCCCCCC
Confidence            588899999998    999999999999999999999863

>2jm4_A Relaxin receptor 1; LDL-A module, RXFP1 receptor, LGR7, signaling protein; NMR {Homo sapiens}

Probab=99.13  E-value=2.9e-11  Score=76.37  Aligned_cols=35  Identities=29%  Similarity=0.550  Sum_probs=32.7

Q ss_pred             CCCCCeeeecC-CCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGN-VGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~n-g~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.+ +    .||+..|+|||+.||.|||||.+
T Consensus         6 ~C~~~~f~C~~~g----~CI~~~~~CDg~~DC~DgSDE~~   41 (43)
T 2jm4_A            6 KCSLGYFPCGNIT----KCLPQLLHCNGVDDCGNQADEDN   41 (43)
T ss_dssp             SCCTTEEECSSSS----CEEEGGGTTSSCCCSSSCCTTSS
T ss_pred             CCCCCeeECCCCC----eEcCHhhccCCCCCCCCCcccCC
Confidence            58899999999 6    89999999999999999999974

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=99.12  E-value=1.5e-11  Score=79.43  Aligned_cols=37  Identities=32%  Similarity=0.575  Sum_probs=33.1

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCc
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTS   75 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~   75 (166)
                      ..+++|+|.++.+||+.+|+|||+.||.|||||.+|.
T Consensus         7 C~~~~F~C~~g~~CI~~~~~CDG~~DC~DgSDE~~C~   43 (48)
T 2i1p_A            7 CTSAQFKCADGSSCINSRYRCDGVYDCRDNSDEAGCP   43 (48)
T ss_dssp             CCSSSEECSSSSCEECGGGSSSSSCCSSSSHHHHSSC
T ss_pred             CCCCeeECCCCCEeCCHhhcCCCCCCCCCCcccccCC
Confidence            3578999999867999999999999999999998753

>1cr8_A Protein (LOW density lipoprotein receptor related protein); ligand binding, calcium binding, LDLR, LRP, lipid binding protein; NMR {Homo sapiens} SCOP: g.12.1.1

Probab=99.12  E-value=3.5e-11  Score=75.67  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=32.2

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++.+|+|.+.+   .||+..|+|||+.||.|||||.+
T Consensus         3 ~C~~~~F~C~~~g---~CI~~~~~CDg~~DC~DgSDE~~   38 (42)
T 1cr8_A            3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCceEeCCCC---eEcChhhcCCCCcCCCCCCcccC
Confidence            5889999998632   89999999999999999999974

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.11  E-value=2.5e-11  Score=77.84  Aligned_cols=35  Identities=34%  Similarity=0.639  Sum_probs=31.1

Q ss_pred             CCCCceEeC-----CCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCK-----DGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~-----~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      ..+++|+|.     ++ +|||.+|+|||+.||.|||||.+|
T Consensus         7 C~~~~F~C~~~~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C   46 (47)
T 1k7b_A            7 CPPGQFRCSEPPGAHG-ECYPQDWLCDGHPDCDDGRDEWGC   46 (47)
T ss_dssp             CSTTEECCSSCTTSCC-CCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CCCCceEcCCCCCCCC-cCCCccccCCCcCCCCCCcccCCC
Confidence            347899998     45 799999999999999999999874

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=99.11  E-value=1.8e-12  Score=107.26  Aligned_cols=51  Identities=25%  Similarity=0.333  Sum_probs=46.3

Q ss_pred             CCCCCCCCCCCCCCCcCCCCCeeee--cCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           60 DNFCDCIDGTDEPGTSACPAGKFYC--GNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        60 DG~~DC~DGSDE~~c~~C~~~~F~C--~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      -+..+|.|+|||.+|..|++++|+|  .++    +|||..|+|||..||.|||||.+
T Consensus        38 ~~~~~c~d~sDE~~C~~C~~~~F~C~~~~g----~CIp~~~~CDG~~DC~DgSDE~~   90 (215)
T 2gtl_O           38 RKAGSLRHRVEELEDPSCDEHEHQCGGDDP----QCISKLFVCDGHNDCRNGEDEKD   90 (215)
T ss_dssp             HHHHHHHHHHHHHSCCSSCTTEEECCSSSC----CEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             cccccCCcchhhccCCCCCCcceeeCCCCC----cCccccccCCCCCcCCCcccccC
Confidence            3456899999999998899999999  566    89999999999999999999975

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.11  E-value=1.7e-11  Score=81.15  Aligned_cols=36  Identities=39%  Similarity=0.614  Sum_probs=33.7

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~  115 (166)
                      .|++++|+|.+|    .||+..|+|||..||.|||||.+.
T Consensus         6 ~C~~~~F~C~nG----~CIp~~~~CDG~~DC~DgSDE~~~   41 (52)
T 2m0p_A            6 SCLDTQYTCDNH----QCISKNWVCDTDNDCGDGSDEKNC   41 (52)
T ss_dssp             SSCSSEEECTTC----CEEETTSTTSSSCSSSSCHHHHSC
T ss_pred             CCCCCceECCCC----CEEecCccCCCCCCCCCCCccccc
Confidence            699999999998    899999999999999999999863

>2m0p_A Low-density lipoprotein receptor-related protein; complement type repeat, megalin, LDL receptor FAMI lipid binding protein; NMR {Homo sapiens}

Probab=99.10  E-value=1.9e-11  Score=80.86  Aligned_cols=35  Identities=23%  Similarity=0.445  Sum_probs=31.9

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      +.+++|+|.+| +|||..|+|||..||.|||||.++
T Consensus         7 C~~~~F~C~nG-~CIp~~~~CDG~~DC~DgSDE~~~   41 (52)
T 2m0p_A            7 CLDTQYTCDNH-QCISKNWVCDTDNDCGDGSDEKNC   41 (52)
T ss_dssp             SCSSEEECTTC-CEEETTSTTSSSCSSSSCHHHHSC
T ss_pred             CCCCceECCCC-CEEecCccCCCCCCCCCCCccccc
Confidence            45789999998 699999999999999999999874

>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}

Probab=99.09  E-value=4.3e-11  Score=75.95  Aligned_cols=35  Identities=40%  Similarity=0.526  Sum_probs=32.3

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|+..+|+|.++    .||+..|+|||+.||.|||||.+
T Consensus         7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgSDE~~   41 (44)
T 3a7q_B            7 ECEKDQFQCRNE----RCIPSVWRCDEDDDCLDHSDEDD   41 (44)
T ss_dssp             -CCTTEEECTTS----CEEEGGGTTSSSCCSSSSTTTSC
T ss_pred             CCCCCceEcCCC----CEeChhhccCCCCCCCCCccccC
Confidence            588999999998    89999999999999999999974

>2kny_A LRP-1, linker, APO-E; lipoprotein receptor, ligand binding module, COMP repeat, calcium, cell membrane, coated PIT, cytoplasm, DEVE protein; NMR {Homo sapiens}

Probab=99.08  E-value=3e-11  Score=85.73  Aligned_cols=54  Identities=24%  Similarity=0.356  Sum_probs=41.9

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCCCCCCC--ccccCCChHHHHhhhc
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP--NTCVMGGNIEYKAQSY  136 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~~~~C~--~~C~~~g~~~~r~~~~  136 (166)
                      .|++++|+|.+.+   .|||..|+|||+.||.|||||... ..|+  ++|....   |++..+
T Consensus         8 ~C~~~~f~C~~~g---~CIp~~~~CDg~~DC~DgsDE~~~-~~C~~~~~C~~~~---f~c~~~   63 (80)
T 2kny_A            8 TCGPSSFSCPGTH---VCVPERWLCDGDKDCADGADESIA-AGCLYNSTGSGSG---SGSTEE   63 (80)
T ss_dssp             CCSSSEEECTTSS---CEEEHHHHTTSSCCSSSSTTTSGG-GTCSSSSTTTTCS---SCHHHH
T ss_pred             CCCCCceecCCCC---eEcChhhcCCCCCCCCCCCccccc-cCCCCCcccCccc---chhhhH
Confidence            5899999998532   899999999999999999999752 2476  6787643   355553

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=99.07  E-value=4.3e-11  Score=75.92  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.3

Q ss_pred             cCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           75 SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        75 ~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      ..|++.+|+|.++    .||+..|+|||+.||.|||||..
T Consensus         3 ~~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            3 HSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCCCCceEeCCC----CeEecCcccCCCCCCCCCCCCCC
Confidence            3588999999998    89999999999999999999974

>1k7b_A Subgroup A ROUS sarcoma virus receptor PG800 and PG950; beta hairpin, 3-10 helix, calcium binding, membrane protein; NMR {Coturnix coturnix} SCOP: g.12.1.1

Probab=99.05  E-value=4.8e-11  Score=76.52  Aligned_cols=35  Identities=34%  Similarity=0.706  Sum_probs=32.0

Q ss_pred             CCCCCeeeec-----CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCG-----NVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~-----ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++.+|+|.     ++    .|||.+|+|||+.||.|||||.+
T Consensus         6 ~C~~~~F~C~~~~~~~g----~CIp~~~~CDG~~DC~DgSDE~~   45 (47)
T 1k7b_A            6 SCPPGQFRCSEPPGAHG----ECYPQDWLCDGHPDCDDGRDEWG   45 (47)
T ss_dssp             CCSTTEECCSSCTTSCC----CCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCCCceEcCCCCCCCC----cCCCccccCCCcCCCCCCcccCC
Confidence            5889999998     45    89999999999999999999974

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.05  E-value=5.4e-11  Score=76.17  Aligned_cols=40  Identities=35%  Similarity=0.680  Sum_probs=32.6

Q ss_pred             cCCCCCeeeecCC-CCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           75 SACPAGKFYCGNV-GSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        75 ~~C~~~~F~C~ng-~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      ..|++.+|+|.++ ++...|||.+|+|||+.||.|||||.+
T Consensus         3 ~~C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~   43 (47)
T 1jrf_A            3 SRCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   43 (47)
T ss_dssp             CCCCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHH
T ss_pred             CCCCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCccccc
Confidence            4689999999841 011289999999999999999999973

>1jrf_A TVA LDL-A module, subgroup A ROUS sarcoma virus receptors PG800 and PG950; disulfide bond, alpha helix, calcium CAGE, signaling protein; NMR {Coturnix japonica} SCOP: g.12.1.1

Probab=99.01  E-value=5.2e-11  Score=76.26  Aligned_cols=36  Identities=31%  Similarity=0.573  Sum_probs=30.9

Q ss_pred             CCCCceEeCC----CCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKD----GSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~----g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      ..+++|+|.+    ..+|||.+|+|||+.||.|||||.+|
T Consensus         5 C~~~~F~C~~~~~~~~~CIp~~~~CDG~~DC~DgSDE~~C   44 (47)
T 1jrf_A            5 CPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   44 (47)
T ss_dssp             CCCCCSCSSSCSCCCTTTSGGGGSSSSSCCSSSSCTTHHH
T ss_pred             CCCCeeECCCCCCCCCeEcCHhhcCCCCcCCCCCcccccC
Confidence            3478999984    33799999999999999999999863

>2knx_A Prolow-density lipoprotein receptor-related prote; LDLR, ligand binding module, ligand binding repeat, compleme repeat, protein binding; NMR {Homo sapiens}

Probab=98.99  E-value=1.8e-10  Score=75.15  Aligned_cols=35  Identities=29%  Similarity=0.468  Sum_probs=32.4

Q ss_pred             CCCCCeeeec-CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~-ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++.+|+|. ++    +||+..|+|||+.||.|||||..
T Consensus         6 ~C~~~~F~C~~~g----~CI~~~~~CDG~~DC~DgSDE~~   41 (50)
T 2knx_A            6 TCGPSSFSCPGTH----VCVPERWLCDGDKDCADGADESI   41 (50)
T ss_dssp             TTCTTEEEETTTT----EEEETTTTTSSSCCSTTCGGGSG
T ss_pred             CCCCCcEEcCCCC----eEcChhhcCCCCCCCCCCCcccc
Confidence            5889999996 76    89999999999999999999985

>2i1p_A Low-density lipoprotein receptor-related protein 2; cysteine-rich repeat, ligand binding domain, calcium CAGE, ligand binding protein; NMR {Rattus norvegicus}

Probab=98.98  E-value=7.7e-11  Score=76.02  Aligned_cols=36  Identities=33%  Similarity=0.566  Sum_probs=32.9

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++.+|+|.++.   .||+..|+|||+.||.|||||.+
T Consensus         6 ~C~~~~F~C~~g~---~CI~~~~~CDG~~DC~DgSDE~~   41 (48)
T 2i1p_A            6 NCTSAQFKCADGS---SCINSRYRCDGVYDCRDNSDEAG   41 (48)
T ss_dssp             CCCSSSEECSSSS---CEECGGGSSSSSCCSSSSHHHHS
T ss_pred             CCCCCeeECCCCC---EeCCHhhcCCCCCCCCCCccccc
Confidence            5888999999973   69999999999999999999984

>1j8e_A Low-density lipoprotein receptor-related protein 1; ligand binding, calcium binding, complement-like repeat, LRP receptor, signaling protein; 1.85A {Homo sapiens} SCOP: g.12.1.1

Probab=98.98  E-value=2e-10  Score=72.81  Aligned_cols=33  Identities=30%  Similarity=0.446  Sum_probs=30.8

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      .+++|+|.++ +|||..|+|||+.||.|||||..
T Consensus         6 ~~~~F~C~~g-~CI~~~~~CDg~~DC~DgSDE~~   38 (44)
T 1j8e_A            6 SSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             CCCceEeCCC-CeEecCcccCCCCCCCCCCCCCC
Confidence            4789999998 69999999999999999999976

>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.95  E-value=8.8e-11  Score=97.21  Aligned_cols=53  Identities=23%  Similarity=0.406  Sum_probs=43.3

Q ss_pred             CCCCCccCCCCCceEe--CCCCceecCCCCCCCCCCCCCCCCCCCCc--CCCCCeeee
Q 031060           31 VHPLDEKYFSKEVIKC--KDGSKSFTRDRLNDNFCDCIDGTDEPGTS--ACPAGKFYC   84 (166)
Q Consensus        31 v~p~~~~~~~p~~F~C--~~g~~CIp~~~vCDG~~DC~DGSDE~~c~--~C~~~~F~C   84 (166)
                      .++.....+.+++|+|  .+| +|||.+|+|||..||.|||||.+|.  .|++.+|+|
T Consensus        47 sDE~~C~~C~~~~F~C~~~~g-~CIp~~~~CDG~~DC~DgSDE~~C~~~~C~~~~F~c  103 (215)
T 2gtl_O           47 VEELEDPSCDEHEHQCGGDDP-QCISKLFVCDGHNDCRNGEDEKDCTLPTKAGDKFIG  103 (215)
T ss_dssp             HHHHSCCSSCTTEEECCSSSC-CEEEGGGTTSSSCCSSSCHHHHCCCCSSCTTCEEEE
T ss_pred             hhhccCCCCCCcceeeCCCCC-cCccccccCCCCCcCCCcccccCCCCCCcCCCceee
Confidence            3333444456899999  566 7999999999999999999999875  688888887

>2fyj_A Low-density lipoprotein receptor-related protein 1; double module, complement type repeat, calcium, beta-2 hairpin, loop-structures; NMR {Homo sapiens} PDB: 2fyl_B

Probab=98.95  E-value=4e-10  Score=79.77  Aligned_cols=51  Identities=31%  Similarity=0.539  Sum_probs=39.4

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCCCCCCC-ccccCCChHHHHhhh
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCP-NTCVMGGNIEYKAQS  135 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~~~~C~-~~C~~~g~~~~r~~~  135 (166)
                      .|++.+|+|.++    .||+..|+|||+.||.|||||..   .|+ ..|...+  +|++.+
T Consensus         4 ~C~~~~f~C~~g----~Ci~~~~~CDg~~DC~DgsDE~~---~C~~~~C~~~~--~f~C~~   55 (82)
T 2fyj_A            4 TCPPNQFSCASG----RCIPISWTCDLDDDCGDRSDESA---SCAYPTCFPLT--QFTCNN   55 (82)
T ss_dssp             SSCTTEEETTSS----CEEETTSSSSCSSSSCSTTTTTS---SCCCSSSCSSS--EEECTT
T ss_pred             CCCCCceEeCCC----CEEeccccCCCcccCCCcccccc---ccccccCCCCC--ceECCC
Confidence            588999999998    89999999999999999999931   354 2453322  366654

>2fcw_B LDL receptor, low-density lipoprotein receptor; protein-protein complex, RAP, escort protein, calcium- binding; 1.26A {Homo sapiens} SCOP: g.12.1.1 g.12.1.1 PDB: 2kri_B

Probab=98.84  E-value=1.4e-09  Score=76.95  Aligned_cols=35  Identities=37%  Similarity=0.589  Sum_probs=32.8

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++.+|+|.++    .||+..|+|||+.||.|||||.+
T Consensus         2 ~C~~~~F~C~~g----~CI~~~~~CDg~~DC~DgSDE~~   36 (80)
T 2fcw_B            2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS   36 (80)
T ss_dssp             CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             CCCCCccCCCCC----CEEeeecccCCcccCCCcccccc
Confidence            488999999998    89999999999999999999985

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.77  E-value=1.2e-09  Score=90.62  Aligned_cols=66  Identities=18%  Similarity=0.273  Sum_probs=43.5

Q ss_pred             CCCCceEeCC-CCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKD-GSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        39 ~~p~~F~C~~-g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      +.+++|+|.+ ...|||.+|+|||..||+|||||... .|....+.|.+     .++-.    ....+|.+++||..
T Consensus        54 C~~~~F~C~~~~g~CI~~~~~CDG~~DC~DgSDE~~~-~C~~~~~~~~~-----~~~g~----~~~~~C~~~~pe~~  120 (217)
T 2gtl_M           54 CDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDPE-TCSLNITHVGS-----SYTGL----ATWTSCEDLNPDHA  120 (217)
T ss_dssp             CCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSHH-HHCCGGGCTTC-----EEEEE----EEESSSCSCCSEEE
T ss_pred             CCCCceecCCCCCcEechhhccCCCCCCCCCCccccC-cCCCCcccCCc-----ccccc----cCcccCCCCCCCee
Confidence            4578999975 23799999999999999999999720 13322222222     12211    23448888888853

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.76  E-value=6.1e-09  Score=86.46  Aligned_cols=49  Identities=14%  Similarity=0.156  Sum_probs=37.6

Q ss_pred             CCCCceEeC-CCCceecCCCCCCCCCCCCCCCCCC--CCc---CCCCC--eeeecCC
Q 031060           39 FSKEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEP--GTS---ACPAG--KFYCGNV   87 (166)
Q Consensus        39 ~~p~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~--~c~---~C~~~--~F~C~ng   87 (166)
                      +.+++|+|. +.+.|||..|+|||..||+|||||.  +|.   .|.+.  ++.|.++
T Consensus        53 C~~~eFqC~~~~g~CIp~~wvCDG~~DC~DGSDE~~~~C~~~~tc~~~qF~g~~~~d  109 (220)
T 2gtl_N           53 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDPDVCDTSVVKAGNVFSGTSTWH  109 (220)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCGGGGCGGGGCTTCEEEEEEEEC
T ss_pred             CCCCccCcCCCCCcEeCcceecCCCCCCCCCCccCcccCCCCCccCCcceeeEecCC
Confidence            346899996 2337999999999999999999996  552   56554  4557776

>2xrc_A Human complement factor I; immune system, hydrolase, conglutinogen activating factor, S protease, complement system; HET: NAG; 2.69A {Homo sapiens}

Probab=98.66  E-value=6.5e-09  Score=94.55  Aligned_cols=66  Identities=24%  Similarity=0.266  Sum_probs=49.3

Q ss_pred             CCceEeCCCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060           41 KEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (166)
Q Consensus        41 p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~  115 (166)
                      ...|.|..+ .+++..+.||+..+|.+.+++.    |...+|+|.++    .||+..++|||+.||.|||||.++
T Consensus       173 ~sl~~C~~~-~~~~~~h~~DagV~C~~~~~~c----~~~~~~~C~~~----~ci~~~~~Cdg~~dC~d~sDE~~C  238 (565)
T 2xrc_A          173 TSLAECTFT-KRRTMGYQDFADVVCYTQKADS----PMDDFFQCVNG----KYISQMKACDGINDCGDQSDELCC  238 (565)
T ss_dssp             SCGGGSEEE-CCCCCSSCCCCEEEBCCC-------------CBCTTS----CBCCTTSTTSSSCCSSSSSSSSSB
T ss_pred             CchhhcccC-cccccccccCCceeccccccCC----CCcCeeECCCC----CccCHHHcCCCcccCCCCcccccc
Confidence            455677655 3778888999999999876551    33556999988    899999999999999999999874

>2gtl_M Hemoglobin linker chain L1; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.62  E-value=1.2e-08  Score=84.46  Aligned_cols=35  Identities=31%  Similarity=0.417  Sum_probs=32.0

Q ss_pred             cCCCCCeeeecC--CCCCceeccCCCccCCCCCCCCCCCCC
Q 031060           75 SACPAGKFYCGN--VGSTPQFIFSSRVNDRICDCCDGSDEY  113 (166)
Q Consensus        75 ~~C~~~~F~C~n--g~~~~~CI~~~~vCDG~~DC~DGSDE~  113 (166)
                      ..|++.+|+|.+  |    .||+..|+|||..||.|||||.
T Consensus        52 ~~C~~~~F~C~~~~g----~CI~~~~~CDG~~DC~DgSDE~   88 (217)
T 2gtl_M           52 HHCDEHESECRGDVP----ECIHDLLFCDGEKDCRDGSDED   88 (217)
T ss_dssp             CCCCTTEEECSSSSC----CEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCCceecCCCCC----cEechhhccCCCCCCCCCCccc
Confidence            359999999975  5    8999999999999999999997

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.46  E-value=8.5e-08  Score=87.51  Aligned_cols=46  Identities=26%  Similarity=0.384  Sum_probs=39.0

Q ss_pred             CceEeC-CCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecCCCCCceecc
Q 031060           42 EVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGNVGSTPQFIF   95 (166)
Q Consensus        42 ~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~ng~~~~~CI~   95 (166)
                      ++|+|. +| +||+..|+|||..||.|||||.+   |....+.|...    .+||
T Consensus        69 ~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sdE~~---c~~~~~~C~~~----~~~~  115 (537)
T 3ojy_B           69 EGFVCAQTG-RCVNRRLLCNGDNDCGDQSDEAN---CRRIYKKCQHE----MDQY  115 (537)
T ss_dssp             SSEECTTTC-CEECGGGTTSSSCCSSSSCTTSS---CSSCSSCCSSC----CBCC
T ss_pred             CccCcCCCC-cEeeccccCCCCCCCCCcccccc---CCCCCCccccC----cCCC
Confidence            799999 78 79999999999999999999998   55556678765    5666

>2gtl_N Extracellular hemoglobin linker L2 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1

Probab=98.44  E-value=9.3e-08  Score=79.40  Aligned_cols=34  Identities=32%  Similarity=0.522  Sum_probs=31.0

Q ss_pred             CCCCCeeeec--CCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCG--NVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (166)
Q Consensus        76 ~C~~~~F~C~--ng~~~~~CI~~~~vCDG~~DC~DGSDE~  113 (166)
                      .|++.+|+|.  ++    .||+..|+|||..||.|||||.
T Consensus        52 ~C~~~eFqC~~~~g----~CIp~~wvCDG~~DC~DGSDE~   87 (220)
T 2gtl_N           52 HCEKRTFQCGGNEQ----ECISDLLVCDGHKDCHNAHDED   87 (220)
T ss_dssp             SSCTTEEECCSSSC----CEEETTTTTSSSCCSTTCTTSC
T ss_pred             CCCCCccCcCCCCC----cEeCcceecCCCCCCCCCCccC
Confidence            5889999996  34    8999999999999999999996

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.41  E-value=1.3e-07  Score=86.84  Aligned_cols=45  Identities=27%  Similarity=0.499  Sum_probs=35.6

Q ss_pred             CCceEeC-CCCceecCCCCCCCCCCCCCCCCCCCCcCCCCCeeeecC
Q 031060           41 KEVIKCK-DGSKSFTRDRLNDNFCDCIDGTDEPGTSACPAGKFYCGN   86 (166)
Q Consensus        41 p~~F~C~-~g~~CIp~~~vCDG~~DC~DGSDE~~c~~C~~~~F~C~n   86 (166)
                      +++|+|. +| +|||..|+|||..||.|||||.+|...+...+.|..
T Consensus        67 ~~~f~C~~~g-~Ci~~~~~Cdg~~dC~d~sDE~~C~~~~~~~~~C~~  112 (554)
T 3ojy_A           67 GQDFQCKETG-RCLKRHLVCNGDQDCLDGSDEDDCEDVRAIDEDCSQ  112 (554)
T ss_dssp             SSSEECSSSC-CEECGGGTTSSSCCSSSCTTSSSCCSCCCCCTTTTT
T ss_pred             CCcCccCCCC-EEcccccccCCcccCCCccccccCCCCCCCcccccc
Confidence            3799999 78 799999999999999999999986433223355644

>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.25  E-value=6.3e-07  Score=81.78  Aligned_cols=31  Identities=26%  Similarity=0.381  Sum_probs=29.5

Q ss_pred             Ceeeec-CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           80 GKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        80 ~~F~C~-ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .+|+|. ||    +||+..|+|||..||.|||||.+
T Consensus        69 ~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sdE~~  100 (537)
T 3ojy_B           69 EGFVCAQTG----RCVNRRLLCNGDNDCGDQSDEAN  100 (537)
T ss_dssp             SSEECTTTC----CEECGGGTTSSSCCSSSSCTTSS
T ss_pred             CccCcCCCC----cEeeccccCCCCCCCCCcccccc
Confidence            799999 87    89999999999999999999986

>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}

Probab=98.09  E-value=2e-06  Score=78.97  Aligned_cols=33  Identities=36%  Similarity=0.555  Sum_probs=30.3

Q ss_pred             CCCCeeeec-CCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           77 CPAGKFYCG-NVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        77 C~~~~F~C~-ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      |+ .+|+|. +|    +||+..|+|||..||.|||||.+
T Consensus        66 c~-~~f~C~~~g----~Ci~~~~~Cdg~~dC~d~sDE~~   99 (554)
T 3ojy_A           66 CG-QDFQCKETG----RCLKRHLVCNGDQDCLDGSDEDD   99 (554)
T ss_dssp             CS-SSEECSSSC----CEECGGGTTSSSCCSSSCTTSSS
T ss_pred             CC-CcCccCCCC----EEcccccccCCcccCCCcccccc
Confidence            53 799999 77    89999999999999999999986

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.58  E-value=2.5e-05  Score=74.90  Aligned_cols=32  Identities=25%  Similarity=0.491  Sum_probs=30.1

Q ss_pred             CceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           42 EVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        42 ~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      +.|+|.+| +||+..|+|||..||.|+|||.+|
T Consensus       121 ~~F~C~~g-~ci~~~~~c~g~~dC~d~sde~~C  152 (913)
T 3t5o_A          121 NKFRCDSG-RCIARKLECNGENDCGDNSDERDC  152 (913)
T ss_dssp             SEEECTTS-CEEEGGGSSSSSCCSSSSGGGTTC
T ss_pred             cccccCCC-ceEccceecCCcccCCCccccccC
Confidence            68999998 799999999999999999999885

>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*

Probab=97.51  E-value=4.6e-05  Score=73.10  Aligned_cols=31  Identities=35%  Similarity=0.472  Sum_probs=29.2

Q ss_pred             CeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           80 GKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        80 ~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      ..|+|.+|    +||+..|+|||..||.|+|||.+
T Consensus       121 ~~F~C~~g----~ci~~~~~c~g~~dC~d~sde~~  151 (913)
T 3t5o_A          121 NKFRCDSG----RCIARKLECNGENDCGDNSDERD  151 (913)
T ss_dssp             SEEECTTS----CEEEGGGSSSSSCCSSSSGGGTT
T ss_pred             cccccCCC----ceEccceecCCcccCCCcccccc
Confidence            67999998    89999999999999999999975

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	166
d1j8ea_	44	g.12.1.1 (A:) Ligand-binding domain of low-density	1e-04

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 44

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (83), Expect = 1e-04
 Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 6/49 (12%)

Query: 73  GTSACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDSSIKCPN 121
           G+ +C + +F C +     + I      D   DC D SDE  +   C N
Sbjct: 1   GSHSCSSTQFKCNS----GRCIPEHWTCDGDNDCGDYSDETHA--NCTN 43

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	166
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.21
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.21
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.21
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.19
d1f8za_	39	Ligand-binding domain of low-density lipoprotein r	99.19
d2fcwb1	39	Ligand-binding domain of low-density lipoprotein r	99.19
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.18
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.18
d1ajja_	37	Ligand-binding domain of low-density lipoprotein r	99.14
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.13
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.13
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.13
d1f5ya1	44	Ligand-binding domain of low-density lipoprotein r	99.12
d1v9u5_	39	Very low-density lipoprotein receptor {Human (Homo	99.11
d1cr8a_	42	Ligand-binding domain of low-density lipoprotein r	99.11
d1f5ya2	41	Ligand-binding domain of low-density lipoprotein r	99.1
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	99.1
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.09
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.09
d2fcwb2	39	Ligand-binding domain of low-density lipoprotein r	99.08
d1d2la_	45	Ligand-binding domain of low-density lipoprotein r	99.07
d1xfea2	44	Ligand-binding domain of low-density lipoprotein r	99.06
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.06
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.06
d2gtlm2	42	Hemoglobin linker chain l1 {Common earthworm (Lumb	99.05
d2gtlo2	41	Extracellular hemoglobin linker l3 subunit {Common	99.03
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.02
d1j8ea_	44	Ligand-binding domain of low-density lipoprotein r	99.02
d2gtln2	41	Extracellular hemoglobin linker l2 subunit {Common	99.02
d1k7ba_	42	soluble Tva ectodomain, sTva47 {Quail (Coturnix co	98.99

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.5e-12  Score=78.23  Aligned_cols=34  Identities=26%  Similarity=0.340  Sum_probs=31.4

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+| .||+.+|+|||+.||.|||||.+|
T Consensus         3 ~~~~f~C~~g-~Ci~~~~~CDg~~DC~dgsDE~~C   36 (37)
T d1ajja_           3 SAFEFHCLSG-ECIHSSWRCDGGPDCKDKSDEENC   36 (37)
T ss_dssp             CTTCEECTTS-CEECGGGTTSSSCCSTTCGGGTTC
T ss_pred             CCCceEcCCC-CEECchhcCCCCCcCCCCchhhcc
Confidence            4689999998 699999999999999999999875

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=2.5e-12  Score=78.96  Aligned_cols=35  Identities=37%  Similarity=0.719  Sum_probs=31.8

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      +.+++|+|.+| +||+.+|+|||+.||.|||||.+|
T Consensus         3 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d2fcwb1           3 CSQAEFRCHDG-KCISRQFVCDSDRDCLDGSDEASC   37 (39)
T ss_dssp             CCTTEEECTTS-CEEEGGGTTSSSCCSTTCTTTTTH
T ss_pred             CCCCCEEcCCC-CEEcchhcCcCcCcCcCCchhcCC
Confidence            34689999988 799999999999999999999874

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=3.5e-12  Score=78.41  Aligned_cols=35  Identities=40%  Similarity=0.638  Sum_probs=33.0

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.++    .||+..|+|||+.||.|||||.+
T Consensus         2 sC~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1f8za_           2 TCRPDEFQCSDG----NCIHGSRQCDREYDCKDMSDEVG   36 (39)
T ss_dssp             CCCTTEEECSSS----CEEETTTSSSCCCCSTTSGGGSS
T ss_pred             CCCCCceEeCCC----CeEChhhcCCCCCcCCCCchhcc
Confidence            589999999998    89999999999999999999974

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.2e-12  Score=79.21  Aligned_cols=35  Identities=26%  Similarity=0.319  Sum_probs=31.4

Q ss_pred             CCCceEeCCCC-ceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGS-KSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~-~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+++ +|||.+|+|||+.||+|||||.+|
T Consensus         2 ~~~~f~C~~g~~~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1v9u5_           2 RIHEISCGAHSTQCIPVSWRCDGENDCDSGEDEENC   37 (39)
T ss_dssp             CTTSCCCSSSSSCCCCGGGSSSSSCCSTTSGGGSSC
T ss_pred             CCCceECCCCCCCeeechhcCcCcccCCCCchhccC
Confidence            46899999763 799999999999999999999884

>d1f8za_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=4.4e-12  Score=77.95  Aligned_cols=35  Identities=31%  Similarity=0.544  Sum_probs=32.0

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      +.+++|+|.+| +|||.+|+|||+.||.|||||.+|
T Consensus         3 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~C   37 (39)
T d1f8za_           3 CRPDEFQCSDG-NCIHGSRQCDREYDCKDMSDEVGC   37 (39)
T ss_dssp             CCTTEEECSSS-CEEETTTSSSCCCCSTTSGGGSSS
T ss_pred             CCCCceEeCCC-CeEChhhcCCCCCcCCCCchhccC
Confidence            35799999998 699999999999999999999874

>d2fcwb1 g.12.1.1 (B:86-124) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.19  E-value=2.4e-12  Score=79.02  Aligned_cols=35  Identities=37%  Similarity=0.589  Sum_probs=32.7

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.++    .||+.+|+|||..||.|||||.+
T Consensus         2 tC~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb1           2 TCSQAEFRCHDG----KCISRQFVCDSDRDCLDGSDEAS   36 (39)
T ss_dssp             CCCTTEEECTTS----CEEEGGGTTSSSCCSTTCTTTTT
T ss_pred             cCCCCCEEcCCC----CEEcchhcCcCcCcCcCCchhcC
Confidence            588999999988    89999999999999999999974

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=6.5e-12  Score=77.84  Aligned_cols=35  Identities=23%  Similarity=0.408  Sum_probs=30.9

Q ss_pred             CCCceEeCCC-CceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g-~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.++ .+|||.+|+|||+.||.|||||.+|
T Consensus         6 ~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~C   41 (41)
T d1f5ya2           6 KSGDFSCGGRVNRCIPQFWRCDGQVDCDNGSDEQGC   41 (41)
T ss_dssp             CSSCEECCSSCCCEECGGGTTCSCCCSSSCTTTTTC
T ss_pred             CCCceECCCCCCCCccchhcCCCcCcCcCcccccCC
Confidence            5789999754 3799999999999999999999874

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=8.1e-12  Score=77.71  Aligned_cols=36  Identities=19%  Similarity=0.345  Sum_probs=32.1

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      +.+++|+|.++.+||+.+|+|||+.||+|||||.+|
T Consensus         4 C~~~~f~C~~~~~CI~~~~~CDg~~DC~DgsDE~~C   39 (42)
T d1cr8a_           4 CHTDEFQCRLDGLCIPLRWRCDGDTDCMDSSDEKSC   39 (42)
T ss_dssp             SSTTCEECTTTCCEECGGGSSSSSCCSSSSTTTTTC
T ss_pred             CCCCceEcCCCCEEccchhcCCCcCcCCCcchhccC
Confidence            457899997655899999999999999999999884

>d1ajja_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=6.8e-12  Score=76.22  Aligned_cols=35  Identities=40%  Similarity=0.449  Sum_probs=32.6

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.++    .||+..|+|||+.||.|||||.+
T Consensus         1 PC~~~~f~C~~g----~Ci~~~~~CDg~~DC~dgsDE~~   35 (37)
T d1ajja_           1 PCSAFEFHCLSG----ECIHSSWRCDGGPDCKDKSDEEN   35 (37)
T ss_dssp             CCCTTCEECTTS----CEECGGGTTSSSCCSTTCGGGTT
T ss_pred             CCCCCceEcCCC----CEECchhcCCCCCcCCCCchhhc
Confidence            388999999998    89999999999999999999974

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.4e-11  Score=77.65  Aligned_cols=36  Identities=36%  Similarity=0.579  Sum_probs=33.6

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYDS  115 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~~  115 (166)
                      .|++++|+|.++    .||+.+++|||+.||.|||||...
T Consensus         5 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           5 QCQPGEFACANS----RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             BTTBTCEEETTT----EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             cCCCCCeEcCCC----CeEChhhhCcCcCcCCCCCCCCcC
Confidence            589999999998    899999999999999999999863

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=1.2e-11  Score=77.56  Aligned_cols=35  Identities=34%  Similarity=0.583  Sum_probs=33.2

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.++    +|||.+|+|||+.||.|||||.+
T Consensus         7 ~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   41 (44)
T d1f5ya1           7 RCERNEFQCQDG----KCISYKWVCDGSAECQDGSDESQ   41 (44)
T ss_dssp             CCCSSSEECSSS----CEECTTTTTSSSCSSSSSGGGTT
T ss_pred             ccCCCCeEcCCC----CeEChhHcCCCcCcCCCCCcCCC
Confidence            599999999998    89999999999999999999985

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=5.4e-12  Score=77.48  Aligned_cols=35  Identities=34%  Similarity=0.564  Sum_probs=32.7

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      +|++++|+|.+|    .||+..|+|||+.||.|||||..
T Consensus         2 tC~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           2 TCGPASFQCNSS----TCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             HCCTTEEECTTS----CEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             ccCCCceEcCCC----CeEChhhcCCCCCCCCCCCcCCC
Confidence            488999999998    89999999999999999999974

>d1f5ya1 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=1.3e-11  Score=77.34  Aligned_cols=35  Identities=29%  Similarity=0.632  Sum_probs=31.9

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      ..+++|+|.++ +|||.+|+|||+.||.|||||..+
T Consensus         8 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~c   42 (44)
T d1f5ya1           8 CERNEFQCQDG-KCISYKWVCDGSAECQDGSDESQE   42 (44)
T ss_dssp             CCSSSEECSSS-CEECTTTTTSSSCSSSSSGGGTTS
T ss_pred             cCCCCeEcCCC-CeEChhHcCCCcCcCCCCCcCCCC
Confidence            35789999998 799999999999999999999874

>d1v9u5_ g.12.1.1 (5:) Very low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Very low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=9.6e-12  Score=76.25  Aligned_cols=36  Identities=33%  Similarity=0.466  Sum_probs=31.8

Q ss_pred             CCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        77 C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      |++++|+|.++.  .+|||.+|+|||+.||.|||||.+
T Consensus         1 C~~~~f~C~~g~--~~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d1v9u5_           1 CRIHEISCGAHS--TQCIPVSWRCDGENDCDSGEDEEN   36 (39)
T ss_dssp             CCTTSCCCSSSS--SCCCCGGGSSSSSCCSTTSGGGSS
T ss_pred             CCCCceECCCCC--CCeeechhcCcCcccCCCCchhcc
Confidence            678999998752  269999999999999999999985

>d1cr8a_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2e-11  Score=75.86  Aligned_cols=36  Identities=33%  Similarity=0.446  Sum_probs=32.5

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.+++   +||+.+|+|||+.||.|||||.+
T Consensus         3 ~C~~~~f~C~~~~---~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d1cr8a_           3 GCHTDEFQCRLDG---LCIPLRWRCDGDTDCMDSSDEKS   38 (42)
T ss_dssp             CSSTTCEECTTTC---CEECGGGSSSSSCCSSSSTTTTT
T ss_pred             CCCCCceEcCCCC---EEccchhcCCCcCcCCCcchhcc
Confidence            5899999997543   89999999999999999999974

>d1f5ya2 g.12.1.1 (A:45-85) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=1.8e-11  Score=75.77  Aligned_cols=37  Identities=35%  Similarity=0.564  Sum_probs=32.2

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.++.  ..|||.+|+|||+.||.|||||.+
T Consensus         4 ~C~~~~f~C~~~~--~~CI~~~~~CDg~~DC~DgsDE~~   40 (41)
T d1f5ya2           4 TCKSGDFSCGGRV--NRCIPQFWRCDGQVDCDNGSDEQG   40 (41)
T ss_dssp             TCCSSCEECCSSC--CCEECGGGTTCSCCCSSSCTTTTT
T ss_pred             ccCCCceECCCCC--CCCccchhcCCCcCcCcCcccccC
Confidence            5899999996531  279999999999999999999974

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=99.10  E-value=1.5e-11  Score=76.37  Aligned_cols=35  Identities=31%  Similarity=0.595  Sum_probs=30.6

Q ss_pred             CCCceEeCCCC----ceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGS----KSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~----~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.+..    +|||.+|+|||+.||+|||||.+|
T Consensus         3 ~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~C   41 (42)
T d1k7ba_           3 PPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWGC   41 (42)
T ss_dssp             STTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGGG
T ss_pred             CcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhcc
Confidence            47899997532    699999999999999999999874

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.6e-11  Score=76.16  Aligned_cols=33  Identities=33%  Similarity=0.559  Sum_probs=30.6

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      .|++|+|.+| +|||..|+|||+.||+|||||..
T Consensus         8 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           8 GPNKFKCHSG-ECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             STTEEECTTS-CEEESTTTTCSSCCCSSCSSSCT
T ss_pred             CCCeEECCCC-CeEchhhcCCCCCCCCCCCccCc
Confidence            4799999999 69999999999999999999974

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.6e-11  Score=76.94  Aligned_cols=36  Identities=31%  Similarity=0.447  Sum_probs=33.6

Q ss_pred             cCCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           75 SACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        75 ~~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      ..|++++|+|.++    .||+..++|||+.||.|||||.+
T Consensus         3 ~~C~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   38 (44)
T d1j8ea_           3 HSCSSTQFKCNSG----RCIPEHWTCDGDNDCGDYSDETH   38 (44)
T ss_dssp             SSSCTTEEECTTS----CEEEGGGTTSSSCCSSSSGGGSH
T ss_pred             ccCCCCcEEcCCC----CEEChhhcCcCcccCCCCCcCCC
Confidence            3699999999998    89999999999999999999985

>d2fcwb2 g.12.1.1 (B:125-163) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2e-11  Score=74.93  Aligned_cols=33  Identities=27%  Similarity=0.381  Sum_probs=30.5

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      .+++|+|.+| .|||..|+|||..||.|||||..
T Consensus         4 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~   36 (39)
T d2fcwb2           4 GPASFQCNSS-TCIPQLWACDNDPDCEDGSDEWP   36 (39)
T ss_dssp             CTTEEECTTS-CEEEGGGTTSSSCCSTTCGGGCG
T ss_pred             CCCceEcCCC-CeEChhhcCCCCCCCCCCCcCCC
Confidence            4689999998 69999999999999999999975

>d1d2la_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=3.9e-11  Score=75.62  Aligned_cols=34  Identities=21%  Similarity=0.409  Sum_probs=31.3

Q ss_pred             CCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           40 SKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        40 ~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      .+++|+|.++ +||+.+|+|||+.||.|||||..+
T Consensus         7 ~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~~   40 (45)
T d1d2la_           7 QPGEFACANS-RCIQERWKCDGDNDCLDNSDEAPA   40 (45)
T ss_dssp             TBTCEEETTT-EEECGGGTTTSSCTTTTCSTTSTT
T ss_pred             CCCCeEcCCC-CeEChhhhCcCcCcCCCCCCCCcC
Confidence            4789999998 799999999999999999999864

>d1xfea2 g.12.1.1 (A:1-44) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=6.2e-11  Score=74.43  Aligned_cols=35  Identities=34%  Similarity=0.453  Sum_probs=31.8

Q ss_pred             CCC-CCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACP-AGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~-~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|. +++|+|.++    .||+..|+|||+.||.|||||..
T Consensus         5 ~C~~~~~f~C~~g----~CI~~~~~CDg~~DC~DgsDE~~   40 (44)
T d1xfea2           5 LCEGPNKFKCHSG----ECITLDKVCNMARDCRDWSDEPI   40 (44)
T ss_dssp             SCCSTTEEECTTS----CEEESTTTTCSSCCCSSCSSSCT
T ss_pred             cCCCCCeEECCCC----CeEchhhcCCCCCCCCCCCccCc
Confidence            464 689999998    89999999999999999999974

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.06  E-value=1.3e-11  Score=76.42  Aligned_cols=36  Identities=19%  Similarity=0.393  Sum_probs=31.0

Q ss_pred             CCCCceEeCCC-CceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g-~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      +.+++|+|..+ .+|||.+|+|||..||+|||||.+|
T Consensus         3 C~~~~f~C~~~~~~CI~~~~~CDg~~DC~dgsDE~~C   39 (41)
T d2gtlo2           3 CDEHEHQCGGDDPQCISKLFVCDGHNDCRNGEDEKDC   39 (41)
T ss_dssp             SCTTEEECCSSSCCEEEGGGTTSSSCCSSSCHHHHCC
T ss_pred             CCcCeeECCCCCCcEeechhccCCCCcCCCCchhccC
Confidence            34789999732 3799999999999999999999875

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.06  E-value=3e-11  Score=75.19  Aligned_cols=36  Identities=33%  Similarity=0.437  Sum_probs=31.4

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEY  113 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~  113 (166)
                      .|++++|+|.++.  ..|||.+|+|||+.||.|||||.
T Consensus         2 ~C~~~~f~C~~~~--~~CI~~~~~CDg~~DC~DgsDE~   37 (42)
T d2gtlm2           2 HCDEHESECRGDV--PECIHDLLFCDGEKDCRDGSDED   37 (42)
T ss_dssp             CCCTTEEECSSSS--CCEEEGGGTTSSSCCSSSSTTTS
T ss_pred             CCCCCeeECCCCC--CCEechhhcCCCCccCCCCCcCC
Confidence            3889999998631  27999999999999999999995

>d2gtlm2 g.12.1.1 (M:60-101) Hemoglobin linker chain l1 {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Hemoglobin linker chain l1
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.05  E-value=4.7e-11  Score=74.28  Aligned_cols=36  Identities=22%  Similarity=0.354  Sum_probs=30.9

Q ss_pred             CCCCCceEeCCC-CceecCCCCCCCCCCCCCCCCCCC
Q 031060           38 YFSKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        38 ~~~p~~F~C~~g-~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      ++.+++|+|.++ .+|||.+|+|||+.||+|||||..
T Consensus         2 ~C~~~~f~C~~~~~~CI~~~~~CDg~~DC~DgsDE~~   38 (42)
T d2gtlm2           2 HCDEHESECRGDVPECIHDLLFCDGEKDCRDGSDEDP   38 (42)
T ss_dssp             CCCTTEEECSSSSCCEEEGGGTTSSSCCSSSSTTTSH
T ss_pred             CCCCCeeECCCCCCCEechhhcCCCCccCCCCCcCCc
Confidence            346899999863 379999999999999999999953

>d2gtlo2 g.12.1.1 (O:60-100) Extracellular hemoglobin linker l3 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l3 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.03  E-value=2.1e-11  Score=75.45  Aligned_cols=37  Identities=38%  Similarity=0.597  Sum_probs=32.0

Q ss_pred             CCCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++++|+|.++  .++||+..|+|||..||.|||||.+
T Consensus         2 ~C~~~~f~C~~~--~~~CI~~~~~CDg~~DC~dgsDE~~   38 (41)
T d2gtlo2           2 SCDEHEHQCGGD--DPQCISKLFVCDGHNDCRNGEDEKD   38 (41)
T ss_dssp             SSCTTEEECCSS--SCCEEEGGGTTSSSCCSSSCHHHHC
T ss_pred             CCCcCeeECCCC--CCcEeechhccCCCCcCCCCchhcc
Confidence            589999999742  1279999999999999999999975

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.02  E-value=9.1e-11  Score=72.59  Aligned_cols=35  Identities=20%  Similarity=0.368  Sum_probs=30.4

Q ss_pred             CCCCceEeCCC-CceecCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDG-SKSFTRDRLNDNFCDCIDGTDEPG   73 (166)
Q Consensus        39 ~~p~~F~C~~g-~~CIp~~~vCDG~~DC~DGSDE~~   73 (166)
                      +.+++|+|.++ ..|||.+|+|||+.||+|||||..
T Consensus         2 C~~~~f~C~~~~g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKRTFQCGGNEQECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTTEEECCSSSCCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCeeECCCcCCCeechHHcCCCCccCCCCCcccc
Confidence            45799999742 379999999999999999999965

>d1j8ea_ g.12.1.1 (A:) Ligand-binding domain of low-density lipoprotein receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Ligand-binding domain of low-density lipoprotein receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.02  E-value=2.5e-11  Score=76.03  Aligned_cols=35  Identities=29%  Similarity=0.418  Sum_probs=31.8

Q ss_pred             CCCCceEeCCCCceecCCCCCCCCCCCCCCCCCCCC
Q 031060           39 FSKEVIKCKDGSKSFTRDRLNDNFCDCIDGTDEPGT   74 (166)
Q Consensus        39 ~~p~~F~C~~g~~CIp~~~vCDG~~DC~DGSDE~~c   74 (166)
                      ..+++|+|.++ .|||.+|+|||+.||.|||||.++
T Consensus         5 C~~~~f~C~~g-~CI~~~~~CDg~~DC~DgsDE~~c   39 (44)
T d1j8ea_           5 CSSTQFKCNSG-RCIPEHWTCDGDNDCGDYSDETHA   39 (44)
T ss_dssp             SCTTEEECTTS-CEEEGGGTTSSSCCSSSSGGGSHH
T ss_pred             CCCCcEEcCCC-CEEChhhcCcCcccCCCCCcCCCC
Confidence            35789999998 699999999999999999999874

>d2gtln2 g.12.1.1 (N:61-101) Extracellular hemoglobin linker l2 subunit {Common earthworm (Lumbricus terrestris) [TaxId: 6398]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: Extracellular hemoglobin linker l2 subunit
species: Common earthworm (Lumbricus terrestris) [TaxId: 6398]

Probab=99.02  E-value=7.9e-11  Score=72.87  Aligned_cols=36  Identities=31%  Similarity=0.474  Sum_probs=31.2

Q ss_pred             CCCCeeeecCCCCCceeccCCCccCCCCCCCCCCCCCC
Q 031060           77 CPAGKFYCGNVGSTPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        77 C~~~~F~C~ng~~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      |++++|+|.+..  +.||+.+|+|||+.||.|||||..
T Consensus         2 C~~~~f~C~~~~--g~Ci~~~~~CDg~~DC~DgsDE~~   37 (41)
T d2gtln2           2 CEKRTFQCGGNE--QECISDLLVCDGHKDCHNAHDEDP   37 (41)
T ss_dssp             SCTTEEECCSSS--CCEEETTTTTSSSCCSTTCTTSCG
T ss_pred             CCCCeeECCCcC--CCeechHHcCCCCccCCCCCcccc
Confidence            889999997521  279999999999999999999964

>d1k7ba_ g.12.1.1 (A:) soluble Tva ectodomain, sTva47 {Quail (Coturnix coturnix) [TaxId: 9091]}

class: Small proteins
fold: LDL receptor-like module
superfamily: LDL receptor-like module
family: LDL receptor-like module
domain: soluble Tva ectodomain, sTva47
species: Quail (Coturnix coturnix) [TaxId: 9091]

Probab=98.99  E-value=5.3e-11  Score=73.82  Aligned_cols=39  Identities=31%  Similarity=0.623  Sum_probs=32.6

Q ss_pred             CCCCCeeeecCCC-CCceeccCCCccCCCCCCCCCCCCCC
Q 031060           76 ACPAGKFYCGNVG-STPQFIFSSRVNDRICDCCDGSDEYD  114 (166)
Q Consensus        76 ~C~~~~F~C~ng~-~~~~CI~~~~vCDG~~DC~DGSDE~~  114 (166)
                      .|++.+|+|.+.. ...+|||.+|+|||+.||.|||||.+
T Consensus         1 tC~~~~f~C~~~~~~~~~CIp~~~~CDg~~DC~DgsDE~~   40 (42)
T d1k7ba_           1 SCPPGQFRCSEPPGAHGECYPQDWLCDGHPDCDDGRDEWG   40 (42)
T ss_dssp             CCSTTEECCSSCTTSCCCCEEGGGSSCSSCCSSSSTTTGG
T ss_pred             CCCcCcEEcCCCCCCCCcEechhhcCCCcCcCcCChhhhc
Confidence            3889999998642 11369999999999999999999974