Citrus Sinensis ID: 031114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-----
MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV
ccccccccHHHHHHHHcccccEEEEEccccccccccccccccccccccccEEEEcccccEEEEEccEEEEcccccccEEEEcccEEEEEEcccccccEEEEEEcccccEEEEEEEEccccccEEEccccccccccccccccHHHHHHHHHHHHHccccccccccc
cccHccccHHHHHHHHccccccEEEEccccccccccccccccccccccEEEEEEEccccEEEEEcccEEEccccccEEEEEEccEEEEEccccEccEEEEEEEEccccEEEEEEEEccccccEEcccHHHHccccccccccccccHHHHHHHHHHHHHHHHHccc
MAKSLKLEENCflnqfgnrsqYQARFNYYahcqrpdlvlglkphsdgtgytivlqdeeglqvlkdeqwftvpkISEAVLVLMGDQmeimtngifkspvhrvvtsaekERFSVVVFYapelnkeigpenglineeCPRLFKNMKDYANIHWEYYQKGQRALHTAKV
MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVlkdeqwftvPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPelnkeigpengliNEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV
MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV
********ENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKG*********
MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV
MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKG*********
*A*SLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEEGLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query165 2.2.26 [Sep-21-2011]
D4N502360 Codeine O-demethylase OS= N/A no 0.848 0.388 0.443 3e-28
D4N501364 Probable 2-oxoglutarate/F N/A no 0.793 0.359 0.421 1e-26
Q39224358 Protein SRG1 OS=Arabidops no no 1.0 0.460 0.364 5e-25
D4N500364 Thebaine 6-O-demethylase N/A no 0.751 0.340 0.436 1e-24
Q9M547334 Flavonol synthase/flavano N/A no 0.878 0.434 0.426 2e-24
Q7XZQ6337 Flavonol synthase/flavano N/A no 0.787 0.385 0.421 2e-22
Q0J1C1322 1-aminocyclopropane-1-car no no 0.812 0.416 0.366 2e-22
P05116315 1-aminocyclopropane-1-car N/A no 0.818 0.428 0.366 2e-22
A2Z1W9322 1-aminocyclopropane-1-car N/A no 0.812 0.416 0.366 2e-22
Q07512348 Flavonol synthase/flavano N/A no 0.769 0.364 0.421 3e-22
>sp|D4N502|DIOX3_PAPSO Codeine O-demethylase OS=Papaver somniferum GN=CODM PE=1 SV=1 Back     alignment and function desciption
 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 63/142 (44%), Positives = 89/142 (62%), Gaps = 2/142 (1%)

Query: 1   MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQ--DEE 58
           + KSL+L E   +           R NYY  C RP+LVLGL  HSD +G TI+LQ  + E
Sbjct: 192 LEKSLQLVEIKGMTDLFEDGLQTMRMNYYPPCPRPELVLGLTSHSDFSGLTILLQLNEVE 251

Query: 59  GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAP 118
           GLQ+ K+E+W ++  + +A +V +GD +EIMTNGI++S  HR V ++ KER S+  F+  
Sbjct: 252 GLQIRKEERWISIKPLPDAFIVNVGDILEIMTNGIYRSVEHRAVVNSTKERLSIATFHDS 311

Query: 119 ELNKEIGPENGLINEECPRLFK 140
           +L  EIGP + L+  E P LFK
Sbjct: 312 KLESEIGPISSLVTPETPALFK 333
Non-heme dioxygenase catalyzing the conversion of codeine to morphine. Catalyzes also, with lower efficiency, the 3-O-demethylation of thebaine to oripavine and of (S)-scoulerine to 3-O-demethylscoulerine. No activity with (S)-reticuline, salutaridine, papaverine, (S)-corytuberine, oripavine, pavine or noscapine.
Papaver somniferum (taxid: 3469)
EC: 1EC: .EC: 1EC: 4EC: .EC: 1EC: 1EC: .EC: 3EC: 2
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1 Back     alignment and function description
>sp|Q39224|SRG1_ARATH Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1 Back     alignment and function description
>sp|D4N500|DIOX1_PAPSO Thebaine 6-O-demethylase OS=Papaver somniferum GN=T6ODM PE=1 SV=1 Back     alignment and function description
>sp|Q9M547|FLS_EUSER Flavonol synthase/flavanone 3-hydroxylase OS=Eustoma exaltatum subsp. russellianum GN=FLS PE=2 SV=1 Back     alignment and function description
>sp|Q7XZQ6|FLS_PETCR Flavonol synthase/flavanone 3-hydroxylase OS=Petroselinum crispum GN=FLS PE=1 SV=1 Back     alignment and function description
>sp|Q0J1C1|ACCO1_ORYSJ 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. japonica GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|P05116|ACCO1_SOLLC 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Solanum lycopersicum GN=ACO1 PE=2 SV=2 Back     alignment and function description
>sp|A2Z1W9|ACCO1_ORYSI 1-aminocyclopropane-1-carboxylate oxidase 1 OS=Oryza sativa subsp. indica GN=ACO1 PE=2 SV=1 Back     alignment and function description
>sp|Q07512|FLS_PETHY Flavonol synthase/flavanone 3-hydroxylase OS=Petunia hybrida GN=FL PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
147806270 281 hypothetical protein VITISV_006625 [Viti 0.993 0.583 0.745 1e-70
224134444 352 predicted protein [Populus trichocarpa] 1.0 0.468 0.728 1e-69
225463599 352 PREDICTED: protein SRG1 [Vitis vinifera] 0.993 0.465 0.739 2e-69
224101593 333 predicted protein [Populus trichocarpa] 1.0 0.495 0.722 6e-69
356547446 318 PREDICTED: LOW QUALITY PROTEIN: protein 0.957 0.496 0.644 4e-57
225446207 356 PREDICTED: protein SRG1 [Vitis vinifera] 1.0 0.463 0.580 6e-52
147784777 357 hypothetical protein VITISV_001365 [Viti 1.0 0.462 0.580 8e-52
359484721 351 PREDICTED: LOW QUALITY PROTEIN: protein 1.0 0.470 0.580 1e-51
217073944 351 unknown [Medicago truncatula] 1.0 0.470 0.568 3e-51
255585999 354 Flavonol synthase/flavanone 3-hydroxylas 1.0 0.466 0.568 3e-51
>gi|147806270|emb|CAN59807.1| hypothetical protein VITISV_006625 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 123/165 (74%), Positives = 142/165 (86%), Gaps = 1/165 (0%)

Query: 1   MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE-EG 59
           MAKSL LEENCFLNQFG R   QARFNYY+ C RPD+VLGLKPH+DG+GYTI+LQ+E +G
Sbjct: 116 MAKSLNLEENCFLNQFGERGALQARFNYYSRCPRPDIVLGLKPHADGSGYTILLQNEVDG 175

Query: 60  LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPE 119
           LQ+LKD+ W T+P IS A+LVLMGDQMEIM+NGIFKSPVHRV+ S+E+ER SV VFY PE
Sbjct: 176 LQILKDDCWLTIPTISNALLVLMGDQMEIMSNGIFKSPVHRVLASSERERISVAVFYTPE 235

Query: 120 LNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAK 164
             K IGPE GLI+EE PRLFK +KDYA+IHW+YYQKGQRALH AK
Sbjct: 236 SGKLIGPEEGLIDEERPRLFKKVKDYADIHWKYYQKGQRALHVAK 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224134444|ref|XP_002327407.1| predicted protein [Populus trichocarpa] gi|222835961|gb|EEE74382.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225463599|ref|XP_002271635.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|297743541|emb|CBI36408.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224101593|ref|XP_002334264.1| predicted protein [Populus trichocarpa] gi|222870502|gb|EEF07633.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356547446|ref|XP_003542123.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like, partial [Glycine max] Back     alignment and taxonomy information
>gi|225446207|ref|XP_002263617.1| PREDICTED: protein SRG1 [Vitis vinifera] gi|147790901|emb|CAN77231.1| hypothetical protein VITISV_002774 [Vitis vinifera] gi|296084536|emb|CBI25557.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147784777|emb|CAN68790.1| hypothetical protein VITISV_001365 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359484721|ref|XP_003633149.1| PREDICTED: LOW QUALITY PROTEIN: protein SRG1-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|217073944|gb|ACJ85332.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255585999|ref|XP_002533669.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] gi|223526437|gb|EEF28715.1| Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query165
TAIR|locus:2010242348 AT1G49390 [Arabidopsis thalian 1.0 0.474 0.514 8.8e-47
TAIR|locus:2149214348 AT5G20400 [Arabidopsis thalian 1.0 0.474 0.491 1.9e-42
TAIR|locus:2149907349 AT5G20550 [Arabidopsis thalian 0.969 0.458 0.515 1.4e-41
TAIR|locus:2154744349 AT5G54000 [Arabidopsis thalian 1.0 0.472 0.479 2.6e-40
TAIR|locus:2089428364 LBO1 "LATERAL BRANCHING OXIDOR 0.993 0.450 0.409 7.1e-29
TAIR|locus:2020422361 AT1G17010 [Arabidopsis thalian 1.0 0.457 0.384 7.3e-27
TAIR|locus:2122669356 AT4G25300 [Arabidopsis thalian 0.890 0.412 0.410 1.8e-25
TAIR|locus:2127691349 AT4G10500 [Arabidopsis thalian 0.957 0.452 0.393 1.8e-25
TAIR|locus:2122679353 AT4G25310 [Arabidopsis thalian 0.903 0.422 0.403 2.2e-25
TAIR|locus:2020407358 SRG1 "senescence-related gene 0.878 0.405 0.4 2.9e-25
TAIR|locus:2010242 AT1G49390 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
 Identities = 86/167 (51%), Positives = 123/167 (73%)

Query:     1 MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE--E 58
             MA+SL+LEENCFL  +G  +   +RFN++  C RPD V+G+KPH+DG+  T++L D+  E
Sbjct:   182 MARSLELEENCFLEMYGENAVMNSRFNFFPPCPRPDKVIGIKPHADGSAITLLLPDKDVE 241

Query:    59 GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAP 118
             GLQ LKD +W+  P + + +L+ +GDQMEIM+NGI+KSPVHRVVT+ EKER SV  F  P
Sbjct:   242 GLQFLKDGKWYKAPIVPDTILITLGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCVP 301

Query:   119 ELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTAKV 165
              L+KEI P +GL+ E  PRL+K +  Y ++H++YYQ+G+R +  A +
Sbjct:   302 GLDKEIHPADGLVTEARPRLYKTVTKYVDLHYKYYQQGRRTIEAALI 348
GO:0005737 "cytoplasm" evidence=ISM
GO:0009813 "flavonoid biosynthetic process" evidence=ISS
GO:0016491 "oxidoreductase activity" evidence=IEA
GO:0016706 "oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors" evidence=IEA;ISS
GO:0055114 "oxidation-reduction process" evidence=IEA
TAIR|locus:2149214 AT5G20400 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149907 AT5G20550 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2154744 AT5G54000 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2089428 LBO1 "LATERAL BRANCHING OXIDOREDUCTASE 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020422 AT1G17010 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122669 AT4G25300 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127691 AT4G10500 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2122679 AT4G25310 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020407 SRG1 "senescence-related gene 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.14.11.4LOW CONFIDENCE prediction!
4th Layer1.14.11.11LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00003273001
SubName- Full=Chromosome undetermined scaffold_141, whole genome shotgun sequence; (352 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00008183001
SubName- Full=Chromosome undetermined scaffold_1274, whole genome shotgun sequence; (163 aa)
  •     0.469
GSVIVG00004995001
SubName- Full=Chromosome undetermined scaffold_884, whole genome shotgun sequence; (92 aa)
  •     0.431

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
PLN00417348 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxy 4e-63
PLN02758361 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxy 7e-41
PLN02393362 PLN02393, PLN02393, leucoanthocyanidin dioxygenase 4e-40
PLN02216357 PLN02216, PLN02216, protein SRG1 2e-37
PLN03001262 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxy 2e-35
PLN02912348 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxy 4e-33
PLN02704335 PLN02704, PLN02704, flavonol synthase 3e-32
PLN02639337 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxy 1e-31
PLN02904357 PLN02904, PLN02904, oxidoreductase 2e-31
PLN03178360 PLN03178, PLN03178, leucoanthocyanidin dioxygenase 7e-31
pfam0317196 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase supe 3e-30
PLN02276361 PLN02276, PLN02276, gibberellin 20-oxidase 8e-30
PLN02947374 PLN02947, PLN02947, oxidoreductase 4e-29
PLN02299321 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxyl 5e-28
PLN02254358 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase 2e-27
PLN02997325 PLN02997, PLN02997, flavonol synthase 5e-25
PLN02750345 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxy 1e-23
PLN02403303 PLN02403, PLN02403, aminocyclopropanecarboxylate o 2e-22
COG3491322 COG3491, PcbC, Isopenicillin N synthase and relate 2e-18
PLN02515358 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-di 3e-17
PLN02984341 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxy 4e-17
PLN02156335 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase 1e-14
PTZ00273320 PTZ00273, PTZ00273, oxidase reductase; Provisional 3e-10
PLN02485329 PLN02485, PLN02485, oxidoreductase 9e-10
PLN02365300 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxy 1e-09
PLN03002332 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxy 1e-08
>gnl|CDD|177810 PLN00417, PLN00417, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information 
 Score =  197 bits (501), Expect = 4e-63
 Identities = 86/165 (52%), Positives = 120/165 (72%), Gaps = 2/165 (1%)

Query: 1   MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDE--E 58
           MA+SL+LEENCFL  +G  +    RFN Y  C RPD V+G+KPH+DG+ +T++L D+  E
Sbjct: 182 MARSLELEENCFLEMYGENATMDTRFNMYPPCPRPDKVIGVKPHADGSAFTLLLPDKDVE 241

Query: 59  GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAP 118
           GLQ LKD +W+  P + + +L+ +GDQMEIM+NGI+KSPVHRVVT+ EKER SV  F  P
Sbjct: 242 GLQFLKDGKWYKAPIVPDTILINVGDQMEIMSNGIYKSPVHRVVTNREKERISVATFCIP 301

Query: 119 ELNKEIGPENGLINEECPRLFKNMKDYANIHWEYYQKGQRALHTA 163
             +KEI P +GL++E  PRL+K +K Y  + ++YYQ+G+R +  A
Sbjct: 302 GADKEIQPVDGLVSEARPRLYKTVKKYVELFFKYYQQGRRPIEAA 346

Length = 348
>gnl|CDD|215404 PLN02758, PLN02758, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|215220 PLN02393, PLN02393, leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>gnl|CDD|215129 PLN02216, PLN02216, protein SRG1 Back     alignment and domain information
>gnl|CDD|166642 PLN03001, PLN03001, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178500 PLN02912, PLN02912, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|166345 PLN02704, PLN02704, flavonol synthase Back     alignment and domain information
>gnl|CDD|178245 PLN02639, PLN02639, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178492 PLN02904, PLN02904, oxidoreductase Back     alignment and domain information
>gnl|CDD|215614 PLN03178, PLN03178, leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>gnl|CDD|217403 pfam03171, 2OG-FeII_Oxy, 2OG-Fe(II) oxygenase superfamily Back     alignment and domain information
>gnl|CDD|215156 PLN02276, PLN02276, gibberellin 20-oxidase Back     alignment and domain information
>gnl|CDD|215510 PLN02947, PLN02947, oxidoreductase Back     alignment and domain information
>gnl|CDD|215168 PLN02299, PLN02299, 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>gnl|CDD|215142 PLN02254, PLN02254, gibberellin 3-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|178576 PLN02997, PLN02997, flavonol synthase Back     alignment and domain information
>gnl|CDD|178351 PLN02750, PLN02750, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|178025 PLN02403, PLN02403, aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>gnl|CDD|226022 COG3491, PcbC, Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>gnl|CDD|178130 PLN02515, PLN02515, naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>gnl|CDD|215534 PLN02984, PLN02984, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>gnl|CDD|177816 PLN02156, PLN02156, gibberellin 2-beta-dioxygenase Back     alignment and domain information
>gnl|CDD|140299 PTZ00273, PTZ00273, oxidase reductase; Provisional Back     alignment and domain information
>gnl|CDD|215267 PLN02485, PLN02485, oxidoreductase Back     alignment and domain information
>gnl|CDD|177993 PLN02365, PLN02365, 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>gnl|CDD|178579 PLN03002, PLN03002, oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 165
PLN02216357 protein SRG1 100.0
PLN03001262 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02904357 oxidoreductase 100.0
PLN02947374 oxidoreductase 100.0
PLN02639337 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02912348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02758361 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02276361 gibberellin 20-oxidase 100.0
PLN02254358 gibberellin 3-beta-dioxygenase 100.0
PLN00417348 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN03178360 leucoanthocyanidin dioxygenase; Provisional 100.0
PLN02299321 1-aminocyclopropane-1-carboxylate oxidase 100.0
PLN02997325 flavonol synthase 100.0
PLN02393362 leucoanthocyanidin dioxygenase like protein 100.0
PLN02704335 flavonol synthase 100.0
PLN02750345 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02365300 2-oxoglutarate-dependent dioxygenase 100.0
PLN02156335 gibberellin 2-beta-dioxygenase 100.0
KOG0143322 consensus Iron/ascorbate family oxidoreductases [S 100.0
PLN03002332 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02515358 naringenin,2-oxoglutarate 3-dioxygenase 100.0
PLN02485329 oxidoreductase 100.0
PTZ00273320 oxidase reductase; Provisional 100.0
PLN02984341 oxidoreductase, 2OG-Fe(II) oxygenase family protei 100.0
PLN02403303 aminocyclopropanecarboxylate oxidase 100.0
COG3491322 PcbC Isopenicillin N synthase and related dioxygen 100.0
PF0317198 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Ent 99.93
PF13640100 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; 96.55
smart00702178 P4Hc Prolyl 4-hydroxylase alpha subunit homologues 93.73
PRK05467226 Fe(II)-dependent oxygenase superfamily protein; Pr 93.47
PF12851171 Tet_JBP: Oxygenase domain of the 2OGFeDO superfami 88.69
PF13532194 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; 85.14
PRK15401213 alpha-ketoglutarate-dependent dioxygenase AlkB; Pr 82.41
>PLN02216 protein SRG1 Back     alignment and domain information 
Probab=100.00  E-value=9.6e-50  Score=336.15  Aligned_cols=165  Identities=39%  Similarity=0.673  Sum_probs=154.9

Q ss_pred             CccccCCChhhhhhhhCCCCcceeEeeeeCCCCCCCcccccccccCCCceEEEecC-C-CCeeEEecCceEEeccCCchh
Q 031114            1 MAKSLKLEENCFLNQFGNRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQD-E-EGLQVLKDEQWFTVPKISEAV   78 (165)
Q Consensus         1 la~~Lgl~~~~~~~~~~~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTll~~d-~-~GLqv~~~g~w~~v~p~~~~~   78 (165)
                      ||++|||++++|.+.+.....+.+|++|||||+.++..+|+++|||+|+||||+|+ + +||||+++|+|++|+|.||++
T Consensus       189 la~~Lgl~~~~f~~~~~~~~~~~lRl~~YPp~p~~~~~~G~~~HtD~g~lTlL~q~~~v~GLQV~~~g~Wi~V~p~pgal  268 (357)
T PLN02216        189 MASALEIKPEEMEKLFDDDLGQSIRMNYYPPCPQPDQVIGLTPHSDAVGLTILLQVNEVEGLQIKKDGKWVSVKPLPNAL  268 (357)
T ss_pred             HHHHcCCCHHHHHHHhccCchheeEEeecCCCCCcccccCccCcccCceEEEEEecCCCCceeEEECCEEEECCCCCCeE
Confidence            58999999999998887644457999999999999889999999999999999995 6 999999999999999999999


Q ss_pred             hhhhhhhhhhhcCCeeecccceeccCCCCCceeeEEEEcCCCCcEEecCCCccCCCCCCCCCChH--HHHHHHHHhhhcc
Q 031114           79 LVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEECPRLFKNMK--DYANIHWEYYQKG  156 (165)
Q Consensus        79 vvn~Gd~l~~~tng~~~a~~HRV~~~~~~~R~S~~~f~~p~~~~~i~p~~~~~~~~~~~~y~~~~--e~~~~~~~~~~~~  156 (165)
                      |||+||+||+||||+|||+.|||+.++.++|||++||+.|+.|++|+|+++++++++|++|++++  ||+..++.....+
T Consensus       269 vVNiGD~L~~~TNG~~kS~~HRVv~~~~~~R~Si~~F~~P~~d~~i~p~~~lv~~~~p~~Y~~~t~~ey~~~~~~~~~~~  348 (357)
T PLN02216        269 VVNVGDILEIITNGTYRSIEHRGVVNSEKERLSVATFHNTGMGKEIGPAKSLVERQKAALFKSLTTKEYFDGLFSRELDG  348 (357)
T ss_pred             EEEcchhhHhhcCCeeeccCceeecCCCCCEEEEEEEecCCCCCeEeCcHHHcCCCCCCCCCCcCHHHHHHHHHhcccCC
Confidence            99999999999999999999999998888999999999999999999999999999999999999  9999999888889


Q ss_pred             cccccccCC
Q 031114          157 QRALHTAKV  165 (165)
Q Consensus       157 ~~~~~~~~~  165 (165)
                      +..++.+||
T Consensus       349 ~~~~~~~~~  357 (357)
T PLN02216        349 KAYLDAMRI  357 (357)
T ss_pred             cchhhhhcC
Confidence            999999886

>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02904 oxidoreductase Back     alignment and domain information
>PLN02947 oxidoreductase Back     alignment and domain information
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02276 gibberellin 20-oxidase Back     alignment and domain information
>PLN02254 gibberellin 3-beta-dioxygenase Back     alignment and domain information
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN03178 leucoanthocyanidin dioxygenase; Provisional Back     alignment and domain information
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase Back     alignment and domain information
>PLN02997 flavonol synthase Back     alignment and domain information
>PLN02393 leucoanthocyanidin dioxygenase like protein Back     alignment and domain information
>PLN02704 flavonol synthase Back     alignment and domain information
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02365 2-oxoglutarate-dependent dioxygenase Back     alignment and domain information
>PLN02156 gibberellin 2-beta-dioxygenase Back     alignment and domain information
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only] Back     alignment and domain information
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase Back     alignment and domain information
>PLN02485 oxidoreductase Back     alignment and domain information
>PTZ00273 oxidase reductase; Provisional Back     alignment and domain information
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein Back     alignment and domain information
>PLN02403 aminocyclopropanecarboxylate oxidase Back     alignment and domain information
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only] Back     alignment and domain information
>PF03171 2OG-FeII_Oxy: 2OG-Fe(II) oxygenase superfamily Entry for Lysyl hydrolases This Prosite entry is a sub-family of the Pfam entry; InterPro: IPR005123 This domain is found in members of the 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily [], as well as the C-terminal of prolyl 4-hydroxylase alpha subunit Back     alignment and domain information
>PF13640 2OG-FeII_Oxy_3: 2OG-Fe(II) oxygenase superfamily; PDB: 3DKQ_B 3GZE_D 3HQR_A 2Y34_A 2G1M_A 2G19_A 3OUI_A 3OUJ_A 2HBU_A 2Y33_A Back     alignment and domain information
>smart00702 P4Hc Prolyl 4-hydroxylase alpha subunit homologues Back     alignment and domain information
>PRK05467 Fe(II)-dependent oxygenase superfamily protein; Provisional Back     alignment and domain information
>PF12851 Tet_JBP: Oxygenase domain of the 2OGFeDO superfamily ; InterPro: IPR024779 TETs are 2OG- and Fe(II)-dependent oxygenases that catalyse the conversion of 5 methyl-Cytosine (5-MC) to 5-hydroxymethyl-cytosine (hmC) in cultured cells and in vitro [] Back     alignment and domain information
>PF13532 2OG-FeII_Oxy_2: 2OG-Fe(II) oxygenase superfamily; PDB: 2IUW_A 3BTZ_A 3RZL_A 3RZH_A 3S5A_A 3RZG_A 3RZJ_A 3BUC_A 3H8X_A 3H8R_A Back     alignment and domain information
>PRK15401 alpha-ketoglutarate-dependent dioxygenase AlkB; Provisional Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1w9y_A319 The Structure Of Acc Oxidase Length = 319 7e-22
1gp5_A356 Anthocyanidin Synthase From Arabidopsis Thaliana Co 3e-16
2brt_A355 Anthocyanidin Synthase From Arabidopsis Thaliana Co 4e-16
1gp4_A356 Anthocyanidin Synthase From Arabidopsis Thaliana (S 7e-16
3oox_A312 Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenas 9e-06
3on7_A280 Crystal Structure Of A Putative Oxygenase (So_2589) 9e-05
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase Length = 319 Back     alignment and structure 
Iteration: 1

 Score = 99.8 bits (247), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/139 (35%), Positives = 82/139 (58%), Gaps = 4/139 (2%)
Query: 1   MAKSLKLEENCFLNQF-GNRS-QYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE 58
           + ++L LE+    N F G++   +  + + Y  C +PDL+ GL+ H+D  G  ++ QD++
Sbjct: 132 LCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDK 191
Query: 59  --GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFY 116
             GLQ+LKD QW  VP    +++V +GDQ+E++TNG +KS  HRV+   +  R S+  FY
Sbjct: 192 VSGLQLLKDGQWIDVPPXRHSIVVNLGDQLEVITNGKYKSVXHRVIAQKDGARXSLASFY 251
Query: 117 APELNKEIGPENGLINEEC 135
            P  +  I P   L+ +E 
Sbjct: 252 NPGSDAVIYPAPALVEKEA 270
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Trans-Dihydroquercetin Length = 356 Back     alignment and structure
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed With Naringenin Length = 355 Back     alignment and structure
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana (Selenomethionine Substituted) Length = 356 Back     alignment and structure
>pdb|3OOX|A Chain A, Crystal Structure Of A Putative 2og-Fe(Ii) Oxygenase Family Protein (Cc_0200) From Caulobacter Crescentus At 1.44 A Resolution Length = 312 Back     alignment and structure
>pdb|3ON7|A Chain A, Crystal Structure Of A Putative Oxygenase (So_2589) From Shewanella Oneidensis At 2.20 A Resolution Length = 280 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query165
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 2e-63
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 3e-63
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 4e-39
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 7e-37
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 9e-30
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 1e-26
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Length = 319 Back     alignment and structure
 Score =  196 bits (500), Expect = 2e-63
 Identities = 52/168 (30%), Positives = 90/168 (53%), Gaps = 9/168 (5%)

Query: 1   MAKSLKLEENCFLNQFGNRSQ--YQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE 58
           + ++L LE+    N F       +  + + Y  C +PDL+ GL+ H+D  G  ++ QD++
Sbjct: 132 LCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDK 191

Query: 59  --GLQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFY 116
             GLQ+LKD QW  VP +  +++V +GDQ+E++TNG +KS +HRV+   +  R S+  FY
Sbjct: 192 VSGLQLLKDGQWIDVPPMRHSIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFY 251

Query: 117 APELNKEIGPENGLIN---EECPRLFKNM--KDYANIHWEYYQKGQRA 159
            P  +  I P   L+    EE  +++      DY  ++     + +  
Sbjct: 252 NPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAGLKFQAKEP 299
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Length = 356 Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Length = 331 Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Length = 311 Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Length = 312 Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Length = 280 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
1w9y_A319 1-aminocyclopropane-1-carboxylate oxidase 1; oxyge 100.0
1gp6_A356 Leucoanthocyanidin dioxygenase; 2-oxoglutarate dep 100.0
3oox_A312 Putative 2OG-Fe(II) oxygenase family protein; stru 100.0
1odm_A331 Isopenicillin N synthase; antibiotic biosynthesis, 100.0
1dcs_A311 Deacetoxycephalosporin C synthase; ferrous oxygena 100.0
3on7_A280 Oxidoreductase, iron/ascorbate family; structural 100.0
3dkq_A243 PKHD-type hydroxylase SBAL_3634; putative oxygenas 90.94
2hbt_A247 EGL nine homolog 1; prolyl hydroxylase, hypoxia in 88.9
2rg4_A216 Uncharacterized protein; rhodobacterales, oceanico 86.76
3tht_A345 Alkylated DNA repair protein ALKB homolog 8; struc 85.96
2iuw_A238 Alkylated repair protein ALKB homolog 3; oxidoredu 85.03
3s57_A204 Alpha-ketoglutarate-dependent dioxygenase ALKB HO; 84.64
3i3q_A211 Alpha-ketoglutarate-dependent dioxygenase ALKB; be 83.32
>1w9y_A 1-aminocyclopropane-1-carboxylate oxidase 1; oxygenase, 2OG oxygenase, ACCO, ACC oxidase; 2.1A {Petunia hybrida} SCOP: b.82.2.1 PDB: 1wa6_X Back     alignment and structure
Probab=100.00  E-value=5.9e-49  Score=325.76  Aligned_cols=163  Identities=31%  Similarity=0.641  Sum_probs=144.0

Q ss_pred             CccccCCChhhhhhhhCC--CCcceeEeeeeCCCCCCCcccccccccCCCceEEEecC-C-CCeeEEecCceEEeccCCc
Q 031114            1 MAKSLKLEENCFLNQFGN--RSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQD-E-EGLQVLKDEQWFTVPKISE   76 (165)
Q Consensus         1 la~~Lgl~~~~~~~~~~~--~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTll~~d-~-~GLqv~~~g~w~~v~p~~~   76 (165)
                      ||++|||++++|.+.+..  .+.+.+|++|||||+.++...|+++|||+|+||+|+|| . +||||+++|+|++|+|.||
T Consensus       132 la~~Lgl~~~~f~~~~~~~~~~~~~lrl~~YPp~~~~~~~~g~~~HtD~g~lTlL~qd~~v~GLQV~~~g~Wi~V~p~pg  211 (319)
T 1w9y_A          132 LCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRH  211 (319)
T ss_dssp             HHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTT
T ss_pred             HHHHcCCCHHHHHHHhcCcCCccceeEEEecCCCcccccccccccccCCCceEEEEecCCCCeeeEeeCCeEEEcccCCC
Confidence            578999999999988864  35567999999999999888999999999999999996 6 9999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCeeecccceeccCCCCCceeeEEEEcCCCCcEEecCCCccCCC---CCCCCCChH--HHHHHHHH
Q 031114           77 AVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLINEE---CPRLFKNMK--DYANIHWE  151 (165)
Q Consensus        77 ~~vvn~Gd~l~~~tng~~~a~~HRV~~~~~~~R~S~~~f~~p~~~~~i~p~~~~~~~~---~~~~y~~~~--e~~~~~~~  151 (165)
                      ++|||+||+||+||||+|||+.|||+.+++++|||++||+.|+.|++|+|++++++++   +|++|++++  ||+..+++
T Consensus       212 alvVNiGD~l~~~SnG~~kS~~HRVv~~~~~~R~Sia~F~~p~~d~~i~pl~~l~~~~~~~~p~~Y~~~t~~ey~~~~~~  291 (319)
T 1w9y_A          212 SIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG  291 (319)
T ss_dssp             CEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTT
T ss_pred             cEEEEhHHHHHHHhCCeeecccceecCCCCCCceEEEEEecCCCCCeEeCchhhcCcccccCccccCcEeHHHHHHHHHh
Confidence            9999999999999999999999999999889999999999999999999999999887   599999999  99998887


Q ss_pred             hhhccccc-cccc
Q 031114          152 YYQKGQRA-LHTA  163 (165)
Q Consensus       152 ~~~~~~~~-~~~~  163 (165)
                      .+..++.. ++.+
T Consensus       292 ~~~~~~~~~~~~~  304 (319)
T 1w9y_A          292 LKFQAKEPRFEAM  304 (319)
T ss_dssp             TTCSSHHHHHHHH
T ss_pred             hhcCcchhHHHHH
Confidence            76666544 3443
>1gp6_A Leucoanthocyanidin dioxygenase; 2-oxoglutarate dependent dioxygenase, flavonoid biosynthesis; HET: MES QUE DH2; 1.75A {Arabidopsis thaliana} SCOP: b.82.2.1 PDB: 1gp5_A* 1gp4_A* 2brt_A* Back     alignment and structure
>3oox_A Putative 2OG-Fe(II) oxygenase family protein; structural genomics, joint center for structural genomics; HET: MSE; 1.44A {Caulobacter crescentus CB15} Back     alignment and structure
>1odm_A Isopenicillin N synthase; antibiotic biosynthesis, B-lactam antibiotic, oxygenase, penicillin biosynthesis, oxidoreductase, iron; HET: ASV; 1.15A {Emericella nidulans} SCOP: b.82.2.1 PDB: 1blz_A* 1hb1_A* 1hb2_A* 1hb3_A* 1hb4_A* 1ips_A 1obn_A* 1oc1_A* 1bk0_A* 1odn_A* 1qiq_A* 1qje_A* 1qjf_A* 1uzw_A* 1w03_A* 1w04_A* 1w05_A* 1w06_A* 1w3v_A* 1w3x_A* ... Back     alignment and structure
>1dcs_A Deacetoxycephalosporin C synthase; ferrous oxygenase, 2-oxoglutarate, oxidoreduc antibiotics, merohedral twinning; 1.30A {Streptomyces clavuligerus} SCOP: b.82.2.1 PDB: 1rxf_A 1rxg_A* 1unb_A* 1uo9_A 1uob_A* 1uof_A* 1uog_A* 2jb8_A 1w28_A 1w2a_X 1w2n_A* 1w2o_A* 1hjg_A 1hjf_A 1e5h_A 1e5i_A* Back     alignment and structure
>3on7_A Oxidoreductase, iron/ascorbate family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.20A {Shewanella oneidensis} Back     alignment and structure
>3dkq_A PKHD-type hydroxylase SBAL_3634; putative oxygenase, structural genomics, JOI for structural genomics, JCSG; 2.26A {Shewanella baltica OS155} Back     alignment and structure
>2hbt_A EGL nine homolog 1; prolyl hydroxylase, hypoxia inducible factor, HIF, 2- oxoglutarate, oxygenase, oxidoreductase; HET: UN9; 1.60A {Homo sapiens} PDB: 2hbu_A* 2g1m_A* 3hqu_A* 3hqr_A* 2y33_A* 2y34_A* 2g19_A* 3ouj_A* 3ouh_A* 3oui_A* Back     alignment and structure
>2rg4_A Uncharacterized protein; rhodobacterales, oceanicola granulosus HTCC2516, Q2CBJ1_9RHO structural genomics, PSI-2; 1.90A {Oceanicola granulosus} PDB: 3bvc_A Back     alignment and structure
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A* Back     alignment and structure
>2iuw_A Alkylated repair protein ALKB homolog 3; oxidoreductase, DNA/RNA repair, demethylase, beta jellyroll; HET: AKG; 1.50A {Homo sapiens} SCOP: b.82.2.10 Back     alignment and structure
>3s57_A Alpha-ketoglutarate-dependent dioxygenase ALKB HO; protein-DNA complex, jelly-roll fold, dioxygenase, dsDNA BIN plasma, oxidoreductase-DNA complex; HET: AKG; 1.60A {Homo sapiens} PDB: 3s5a_A* 3rzg_A 3rzl_A 3rzh_A* 3rzj_A* 3rzk_A* 3rzm_A 3bty_A* 3buc_A* 3h8r_A* 3h8o_A* 3h8x_A* 3btx_A* 3bu0_A* 3btz_A* Back     alignment and structure
>3i3q_A Alpha-ketoglutarate-dependent dioxygenase ALKB; beta jellyroll, DNA damage, DNA repair, iron, M binding, oxidoreductase; HET: AKG; 1.40A {Escherichia coli} SCOP: b.82.2.10 PDB: 2fd8_A* 2fdg_A* 2fdh_A* 2fdf_A* 2fdj_A 2fdk_A* 2fdi_A* 3i2o_A* 3i3m_A* 3i49_A* 3t4h_B* 3t3y_A* 3t4v_A* 3o1t_A* 3o1o_A* 3o1m_A* 3o1r_A* 3o1s_A* 3o1p_A* 3o1u_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 165
d1gp6a_349 b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cr 2e-28
d1w9ya1307 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxyla 2e-25
d1dcsa_311 b.82.2.1 (A:) Deacetoxycephalosporin C synthase {S 5e-19
d1odma_329 b.82.2.1 (A:) Isopenicillin N synthase {Emericella 1e-15
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 349 Back     information, alignment and structure

class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: Anthocyanidin synthase
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (262), Expect = 2e-28
 Identities = 47/164 (28%), Positives = 85/164 (51%), Gaps = 4/164 (2%)

Query: 1   MAKSLKLEENCFLNQFG--NRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQDEE 58
           ++  L LE +    + G       Q + NYY  C +P+L LG++ H+D +  T +L +  
Sbjct: 186 LSVGLGLEPDRLEKEVGGLEELLLQMKINYYPKCPQPELALGVEAHTDVSALTFILHNMV 245

Query: 59  G-LQVLKDEQWFTVPKISEAVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYA 117
             LQ+  + +W T   + +++++ +GD +EI++NG +KS +HR + + EK R S  VF  
Sbjct: 246 PGLQLFYEGKWVTAKCVPDSIVMHIGDTLEILSNGKYKSILHRGLVNKEKVRISWAVFCE 305

Query: 118 PELNKEI-GPENGLINEECPRLFKNMKDYANIHWEYYQKGQRAL 160
           P  +K +  P   +++ E P  F       +I  + + K Q  L
Sbjct: 306 PPKDKIVLKPLPEMVSVESPAKFPPRTFAQHIEHKLFGKEQEEL 349
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Length = 307 Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Length = 311 Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Length = 329 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query165
d1w9ya1307 1-aminocyclopropane-1-carboxylate oxidase 1 {Petun 100.0
d1gp6a_349 Anthocyanidin synthase {Mouse-ear cress (Arabidops 100.0
d1odma_329 Isopenicillin N synthase {Emericella nidulans [Tax 100.0
d1dcsa_311 Deacetoxycephalosporin C synthase {Streptomyces cl 100.0
d2iuwa1210 AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606] 92.92
d2fdia1200 Alkylated DNA repair protein AlkB {Escherichia col 83.28
>d1w9ya1 b.82.2.1 (A:2-308) 1-aminocyclopropane-1-carboxylate oxidase 1 {Petunia hybrida [TaxId: 4102]} Back     information, alignment and structure
class: All beta proteins
fold: Double-stranded beta-helix
superfamily: Clavaminate synthase-like
family: Penicillin synthase-like
domain: 1-aminocyclopropane-1-carboxylate oxidase 1
species: Petunia hybrida [TaxId: 4102]

Probab=100.00  E-value=1.4e-47  Score=312.66  Aligned_cols=162  Identities=32%  Similarity=0.652  Sum_probs=143.0

Q ss_pred             CccccCCChhhhhhhhC--CCCcceeEeeeeCCCCCCCcccccccccCCCceEEEecC-C-CCeeEEecCceEEeccCCc
Q 031114            1 MAKSLKLEENCFLNQFG--NRSQYQARFNYYAHCQRPDLVLGLKPHSDGTGYTIVLQD-E-EGLQVLKDEQWFTVPKISE   76 (165)
Q Consensus         1 la~~Lgl~~~~~~~~~~--~~~~~~lrl~~Yp~~~~~~~~~g~~~HtD~~~lTll~~d-~-~GLqv~~~g~w~~v~p~~~   76 (165)
                      +|++||+++++|.+.+.  ..+.+.+|++||||++.++...|+++|||+|+||+|+|+ . +||||.++|+|++|+|.+|
T Consensus       131 la~~Lgl~~~~f~~~~~~~~~~~~~lr~~~YP~~~~~~~~~g~~~HtD~~~lTlL~q~~~~ggl~~~~~g~Wi~v~p~~~  210 (307)
T d1w9ya1         131 LCENLGLEKGYLKNAFYGSKGPNFGTKVSNYPPCPKPDLIKGLRAHTDAGGIILLFQDDKVSGLQLLKDGQWIDVPPMRH  210 (307)
T ss_dssp             HHHHHTCCTTHHHHHHHTTTCCEEEEEEEECCCCSCGGGGSSCCCBCCSSSEEEEEESSSCCCEEEEETTEEEECCCCTT
T ss_pred             HHHHcCCchHHHHhhhhccccccccceecCCCCCcccccccccccccccceeEEeeccCCCCeEEEecCCcEEEeccCCC
Confidence            47899999999988763  335667999999999999888999999999999999997 4 9999999999999999999


Q ss_pred             hhhhhhhhhhhhhcCCeeecccceeccCCCCCceeeEEEEcCCCCcEEecCCCccC---CCCCCCCCChH--HHHHHHHH
Q 031114           77 AVLVLMGDQMEIMTNGIFKSPVHRVVTSAEKERFSVVVFYAPELNKEIGPENGLIN---EECPRLFKNMK--DYANIHWE  151 (165)
Q Consensus        77 ~~vvn~Gd~l~~~tng~~~a~~HRV~~~~~~~R~S~~~f~~p~~~~~i~p~~~~~~---~~~~~~y~~~~--e~~~~~~~  151 (165)
                      ++|||+||+||+||||+|+|+.|||+.+++.+|||++||+.|+.|++|+|++++++   +++|++|++|+  ||++.+.+
T Consensus       211 ~~vVnvGD~l~~~Tng~~kSt~HRVv~~~~~~R~Si~~F~~p~~d~~i~p~~~~v~~~~~~~p~~y~~~t~~ey~~~~~~  290 (307)
T d1w9ya1         211 SIVVNLGDQLEVITNGKYKSVMHRVIAQKDGARMSLASFYNPGSDAVIYPAPALVEKEAEENKQVYPKFVFDDYMKLYAG  290 (307)
T ss_dssp             CEEEEECHHHHHHTTTSSCCCCEEECCCSSSCCEEEEEEEECCTTCEECCCGGGC--------CCCCCEEHHHHHHTTTT
T ss_pred             eEEEEcchhhHHhhCCcccCcCceeecCCCCCcEEEEEEeeCCCCCEEeCCHHHhcccCccCCCCCCCeeHHHHHHHHHh
Confidence            99999999999999999999999999998899999999999999999999999986   46789999999  99998888


Q ss_pred             hhhccccc-ccc
Q 031114          152 YYQKGQRA-LHT  162 (165)
Q Consensus       152 ~~~~~~~~-~~~  162 (165)
                      .+..+|+. ++.
T Consensus       291 ~~~~~~~~~~~~  302 (307)
T d1w9ya1         291 LKFQAKEPRFEA  302 (307)
T ss_dssp             TTCSSHHHHHHH
T ss_pred             ccCCcccHHHHH
Confidence            77776653 443
>d1gp6a_ b.82.2.1 (A:) Anthocyanidin synthase {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1odma_ b.82.2.1 (A:) Isopenicillin N synthase {Emericella nidulans [TaxId: 162425]} Back     information, alignment and structure
>d1dcsa_ b.82.2.1 (A:) Deacetoxycephalosporin C synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d2iuwa1 b.82.2.10 (A:70-279) AlkB homolog 3 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2fdia1 b.82.2.10 (A:15-214) Alkylated DNA repair protein AlkB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure