Citrus Sinensis ID: 031210

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160----
Protein Sequence
MINAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC
Secondary Structure (PSIPRED)
cccHHHHHHHHHcccccEEEEcccccccccccccccccccccccccccccccccccccccccEEEcccEEEEEEcccccHHcHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccEEEEEEccccccccHHHHHEEEEEEEEcccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcccccHHHHHHHHccccccccccHHHHccc
Coil and Loop (DISEMBL)
MINAEGILEQLRLGIAKFElvsspvasisnpnsqtcptafhrdsnhlffarigpplgggspvmKKVERYLVQRVTGDGRCLFRALVKGMALnkginlnsreeredADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRigrsdfwggeSELLVSTC
Flexible Loop (DISEMBL)
MINAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGmalnkginlnsreeredaddLRMAVKEvicdsgserrqYEEALisitideslKRYCQRIgrsdfwggesellvstc
Low Complexity Region (SEG)
MINAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered region (IsUnstruct)
******ILEQLRLGIAKFELVSS************CPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINL*************MAVKEVICDSG**RRQYEEALISITIDESLKRYCQRIGRSDFWGGE********
Disordered Region (DISOPRED)
**N*EGILEQLRLGIAKFEL********************************************KVERYLVQRVTGDGRCLFRALVKGMAL****************DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered Region (DISEMBL)
MINAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNS********DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC
Disordered Region (DISPRO)
MINAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MINAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	164	2.2.26 [Sep-21-2011]
Q8LBZ4	317	OTU domain-containing pro	no	no	0.530	0.274	0.343	2e-06

>sp|Q8LBZ4|OTU_ARATH OTU domain-containing protein At3g57810 OS=Arabidopsis thaliana GN=At3g57810 PE=2 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 48/96 (50%), Gaps = 9/96 (9%)

Query: 69  YLVQRVTGDGRCLFRALVKGMALNKG-INLNSREEREDADDLRMAVKEVICDSGSERRQY 127
           Y +  + GDGRCLFR++  G  L  G +    + +RE AD+LR  V     D   +RRQ 
Sbjct: 168 YSIIGIPGDGRCLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRV----ADEFIQRRQE 223

Query: 128 EEALISITIDESLKRYCQRIGRSDFWGGESELLVST 163
            E  +    D     Y ++I     WGGE EL +++
Sbjct: 224 TEWFVEGDFDT----YVRQIRDPHVWGGEPELFMAS 255

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
255573893	162	conserved hypothetical protein [Ricinus	0.957	0.969	0.705	4e-60
356504295	226	PREDICTED: OTU domain-containing protein	0.957	0.694	0.656	1e-52
225440598	226	PREDICTED: uncharacterized protein LOC10	0.932	0.676	0.700	1e-50
388523101	225	unknown [Lotus japonicus]	0.957	0.697	0.670	6e-50
146454972	138	putative auxin-regulated protein [Sonner	0.835	0.992	0.692	9e-49
297827355	233	hypothetical protein ARALYDRAFT_482809 [	0.939	0.660	0.654	2e-48
146454974	138	putative auxin-regulated protein [Sonner	0.835	0.992	0.685	3e-48
30687357	234	cysteine proteinase-like protein [Arabid	0.939	0.658	0.654	4e-48
146454978	138	putative auxin-regulated protein [Sonner	0.835	0.992	0.678	8e-48
449439930	227	PREDICTED: OTU domain-containing protein	0.945	0.682	0.658	4e-46

>gi|255573893|ref|XP_002527865.1| conserved hypothetical protein [Ricinus communis] gi|223532716|gb|EEF34496.1| conserved hypothetical protein [Ricinus communis]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/163 (70%), Positives = 132/163 (80%), Gaps = 6/163 (3%)

Query: 2   INAEGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSP 61
           +N + ILEQL+ G+AKFE+VSSP  SIS        T F   ++H FFARIGP L  GSP
Sbjct: 6   VNDKNILEQLKHGVAKFEIVSSPDPSISTW------TPFFAHTSHRFFARIGPSLSSGSP 59

Query: 62  VMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSG 121
             KK+ERY VQ+VTGDGRCLFRALVKGMALNKG++LN REER+DADDLRMAVKEV+C+  
Sbjct: 60  ATKKLERYSVQKVTGDGRCLFRALVKGMALNKGVSLNPREERDDADDLRMAVKEVLCNGD 119

Query: 122 SERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC 164
            ERRQYEEALI+I++DESLKRYCQRIGR DFWGGESELL  TC
Sbjct: 120 KERRQYEEALIAISVDESLKRYCQRIGRPDFWGGESELLECTC 162

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504295|ref|XP_003520932.1| PREDICTED: OTU domain-containing protein At3g57810-like [Glycine max]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 103/157 (65%), Positives = 123/157 (78%)

Query: 5   EGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMK 64
           E +LEQLR G AKFE+VSSPV S++ P ++        +S+ + FARIG   GG SP MK
Sbjct: 10  EDVLEQLRNGTAKFEVVSSPVPSVAAPPNRNTSLFGIGNSSTVLFARIGSSFGGHSPAMK 69

Query: 65  KVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSER 124
           K+E + VQ+VTGDGRCLFRALVKGMA NKG  LN REERE+AD+LRMAVKE IC++  ER
Sbjct: 70  KLEHFSVQKVTGDGRCLFRALVKGMAYNKGTTLNQREERENADELRMAVKEAICENEGER 129

Query: 125 RQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           + YEEALI+IT+DE +KRYCQRI R DFWGGESELLV
Sbjct: 130 KLYEEALIAITVDEPIKRYCQRIVRPDFWGGESELLV 166

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440598|ref|XP_002277660.1| PREDICTED: uncharacterized protein LOC100244154 isoform 1 [Vitis vinifera] gi|297740254|emb|CBI30436.3| unnamed protein product [Vitis vinifera]

 Score =  204 bits (518), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 110/157 (70%), Positives = 130/157 (82%), Gaps = 4/157 (2%)

Query: 5   EGILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMK 64
           E +L+QL+ G A+FELVSSPV SIS+P   T  T    ++   FFARIG  LGG SP MK
Sbjct: 10  EAVLQQLKHGRARFELVSSPVPSISSPKLPTLST----ENGPQFFARIGSSLGGASPAMK 65

Query: 65  KVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSER 124
           KV+RY VQ+VTGDGRC+FRALVKGMA NKGI ++SREER+DAD+LRMAVKE+IC +G ER
Sbjct: 66  KVQRYSVQKVTGDGRCMFRALVKGMAFNKGIAISSREERDDADELRMAVKEIICGNGKER 125

Query: 125 RQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           RQYEEAL++IT++ESLKRYCQRI R DFWGGESELLV
Sbjct: 126 RQYEEALVAITVEESLKRYCQRIERPDFWGGESELLV 162

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388523101|gb|AFK49612.1| unknown [Lotus japonicus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 106/158 (67%), Positives = 122/158 (77%), Gaps = 1/158 (0%)

Query: 5   EGILEQLRLGIAKFELVS-SPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVM 63
           E ILEQ+R G AKFELVS SPV SI+   ++        +S+ LFFAR+G    G SP M
Sbjct: 8   EDILEQMRNGSAKFELVSDSPVPSIAALPNRNASFFGVGNSSSLFFARVGSLFSGQSPAM 67

Query: 64  KKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSE 123
           KKVER  V +VTGDGRCLFRALVKGMA NKG+ LN REERE AD+LRMAVKEVIC++  E
Sbjct: 68  KKVERLSVHKVTGDGRCLFRALVKGMAHNKGVALNQREERESADELRMAVKEVICENEGE 127

Query: 124 RRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           R+ YEEALI+IT+DE L RYC+RI RSDFWGGESELLV
Sbjct: 128 RKLYEEALIAITVDEPLPRYCKRIVRSDFWGGESELLV 165

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454972|gb|ABQ42152.1| putative auxin-regulated protein [Sonneratia alba] gi|241865252|gb|ACS68704.1| putative auxin-regulated protein [Sonneratia alba] gi|241865485|gb|ACS68775.1| putative auxin-regulated protein [Sonneratia alba]

 Score =  197 bits (502), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 114/140 (81%), Gaps = 3/140 (2%)

Query: 7   ILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKV 66
           IL+QL+ G A+FEL+ SP ASIS   S   P  F   ++H FFARIG  +GG SP MKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKSPAMKKV 58

Query: 67  ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQ 126
           E Y VQ+VTGDGRCLFRALVKGMA NKG++L +REER+DAD+LRMAVKE+ICDSG +RRQ
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLGAREERDDADELRMAVKEIICDSGEDRRQ 118

Query: 127 YEEALISITIDESLKRYCQR 146
           YEEAL++ITID SLKRYCQR
Sbjct: 119 YEEALVAITIDVSLKRYCQR 138

Source: Sonneratia alba

Species: Sonneratia alba

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297827355|ref|XP_002881560.1| hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata] gi|297327399|gb|EFH57819.1| hypothetical protein ARALYDRAFT_482809 [Arabidopsis lyrata subsp. lyrata]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 125/159 (78%), Gaps = 5/159 (3%)

Query: 7   ILEQLRLGIAKFELVSSPVASISNPNSQT-CPTAFH---RDSNHLFFARIGPPLGGGSPV 62
           ILEQLR G A+FELVSSP ASIS+  S    P +F    + ++++FFARIG  +   SP 
Sbjct: 11  ILEQLRNGFARFELVSSPTASISDSISSISLPASFMSATKGNSYVFFARIGSSMNR-SPA 69

Query: 63  MKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGS 122
            KKVE+Y V RV GDGRCLFRALVKGMA NKG+ LN + ER+DAD+LRMAVKEVIC+   
Sbjct: 70  AKKVEQYAVDRVKGDGRCLFRALVKGMAFNKGVTLNPQRERDDADELRMAVKEVICNDPK 129

Query: 123 ERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           E+ +Y+EAL++IT+DESLKRYCQRIGR DFWGGESELLV
Sbjct: 130 EKEKYKEALVAITVDESLKRYCQRIGRHDFWGGESELLV 168

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454974|gb|ABQ42153.1| putative auxin-regulated protein [Sonneratia caseolaris]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 96/140 (68%), Positives = 114/140 (81%), Gaps = 3/140 (2%)

Query: 7   ILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKV 66
           IL+QL+ G A+FEL+ SP ASIS   S   P  F   ++H FFARIG  +GG SP MKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKSPAMKKV 58

Query: 67  ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQ 126
           E Y VQ+VTGDGRCLFRALVKGMA NKG++L++ EER+DAD+LRMAVKE+ICDSG +RRQ
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLSTWEERDDADELRMAVKEIICDSGEDRRQ 118

Query: 127 YEEALISITIDESLKRYCQR 146
           YEEAL++ITID SLKRYCQR
Sbjct: 119 YEEALVAITIDVSLKRYCQR 138

Source: Sonneratia caseolaris

Species: Sonneratia caseolaris

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30687357|ref|NP_850290.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|26449806|dbj|BAC42026.1| putative auxin-regulated protein [Arabidopsis thaliana] gi|28950787|gb|AAO63317.1| At2g38025 [Arabidopsis thaliana] gi|330254387|gb|AEC09481.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|407078832|gb|AFS88947.1| OTU-containing deubiquitinating enzyme 3 [Arabidopsis thaliana]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 104/159 (65%), Positives = 125/159 (78%), Gaps = 5/159 (3%)

Query: 7   ILEQLRLGIAKFELVSSPVASISNPNSQT-CPTAF---HRDSNHLFFARIGPPLGGGSPV 62
           ILEQLR G A+FELVSSP AS+S+  S T  P +F    + ++++FFARI   +   SP 
Sbjct: 11  ILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINSSMNR-SPA 69

Query: 63  MKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGS 122
            KKVE+Y V RV GDGRCLFRALVKGMA NKGI LN + ER+DAD+LRMAVKEVIC+   
Sbjct: 70  AKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDADELRMAVKEVICNDPK 129

Query: 123 ERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           ER +Y+EAL++IT+DESLKR+CQRIGR DFWGGESELLV
Sbjct: 130 EREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLV 168

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|146454978|gb|ABQ42155.1| putative auxin-regulated protein [Sonneratia apetala]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/140 (67%), Positives = 114/140 (81%), Gaps = 3/140 (2%)

Query: 7   ILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKV 66
           IL+QL+ G A+FEL+ SP ASIS   S   P  F   ++H FFARIG  +GG  P MKKV
Sbjct: 2   ILQQLKDGTARFELLPSPAASIS---SFKWPRLFSGSNSHRFFARIGSSIGGKPPAMKKV 58

Query: 67  ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQ 126
           E Y VQ+VTGDGRCLFRALVKGMA NKG++L++REER+DAD+LRMAVKE+ICDSG ++RQ
Sbjct: 59  EHYSVQKVTGDGRCLFRALVKGMAFNKGVSLSTREERDDADELRMAVKEIICDSGEDQRQ 118

Query: 127 YEEALISITIDESLKRYCQR 146
           YEEAL++ITID SLKRYCQR
Sbjct: 119 YEEALVAITIDVSLKRYCQR 138

Source: Sonneratia apetala

Species: Sonneratia apetala

Genus: Sonneratia

Family: Lythraceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439930|ref|XP_004137738.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus] gi|449483441|ref|XP_004156592.1| PREDICTED: OTU domain-containing protein At3g57810-like [Cucumis sativus]

 Score =  189 bits (480), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/155 (65%), Positives = 121/155 (78%)

Query: 7   ILEQLRLGIAKFELVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKV 66
           ILEQL+LGIA+FEL SSPV+SIS  NS         + ++  FA+IGP LG  SP ++K 
Sbjct: 13  ILEQLQLGIARFELSSSPVSSISPSNSVASSFPLSMNPSYPLFAKIGPVLGIESPALRKA 72

Query: 67  ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQ 126
           E+Y VQ+VTGDGRCLFRAL KGMA N+GI L   EE+ DADDLRMAVKEVICD+G E+RQ
Sbjct: 73  EQYKVQKVTGDGRCLFRALAKGMAFNRGIPLRPFEEKNDADDLRMAVKEVICDNGKEKRQ 132

Query: 127 YEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           YE ALI+IT++E L+RYCQRI   DFWGGESELLV
Sbjct: 133 YEAALIAITVEEPLERYCQRIRTPDFWGGESELLV 167

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	164
TAIR|locus:504955906	234	AT2G38025 "AT2G38025" [Arabido	0.939	0.658	0.654	5.2e-49
TAIR|locus:2095748	317	AT3G57810 "AT3G57810" [Arabido	0.810	0.419	0.289	2.4e-07

TAIR|locus:504955906 AT2G38025 "AT2G38025" [Arabidopsis thaliana (taxid:3702)]

 Score = 511 (184.9 bits), Expect = 5.2e-49, P = 5.2e-49
 Identities = 104/159 (65%), Positives = 125/159 (78%)

Query:     7 ILEQLRLGIAKFELVSSPVASISNPNSQTC-PTAF---HRDSNHLFFARIGPPLGGGSPV 62
             ILEQLR G A+FELVSSP AS+S+  S T  P +F    + ++++FFARI   +   SP 
Sbjct:    11 ILEQLRNGFARFELVSSPTASVSDSISSTSLPASFISTTKGNSYVFFARINSSMNR-SPA 69

Query:    63 MKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGS 122
              KKVE+Y V RV GDGRCLFRALVKGMA NKGI LN + ER+DAD+LRMAVKEVIC+   
Sbjct:    70 AKKVEKYAVDRVKGDGRCLFRALVKGMAFNKGITLNPQRERDDADELRMAVKEVICNDPK 129

Query:   123 ERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
             ER +Y+EAL++IT+DESLKR+CQRIGR DFWGGESELLV
Sbjct:   130 EREKYKEALVAITVDESLKRFCQRIGRHDFWGGESELLV 168

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095748 AT3G57810 "AT3G57810" [Arabidopsis thaliana (taxid:3702)]

 Score = 124 (48.7 bits), Expect = 2.4e-07, P = 2.4e-07
 Identities = 42/145 (28%), Positives = 64/145 (44%)

Query:    20 LVSSPVASISNPNSQTCPTAFHRDSNHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGR 79
             +VS  V   S   S    ++  +D+N++           G  V      Y +  + GDGR
Sbjct:   122 IVSLLVCYSSTSQSAYADSSRDKDANNVHHHSSDGKFHNGKRVYTD---YSIIGIPGDGR 178

Query:    80 CLFRALVKGMALNKG-INLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDE 138
             CLFR++  G  L  G +    + +RE AD+LR  V     D   +RRQ  E  +    D 
Sbjct:   179 CLFRSVAHGFCLRSGKLAPGEKMQRELADELRTRV----ADEFIQRRQETEWFVEGDFDT 234

Query:   139 SLKRYCQRIGRSDFWGGESELLVST 163
                 Y ++I     WGGE EL +++
Sbjct:   235 ----YVRQIRDPHVWGGEPELFMAS 255


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.398    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      164       164   0.00088  107 3  11 22  0.38    32
                                                     30  0.45    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  138 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.15u 0.13s 15.28t   Elapsed:  00:00:01
  Total cpu time:  15.15u 0.13s 15.28t   Elapsed:  00:00:01
  Start:  Fri May 10 16:12:51 2013   End:  Fri May 10 16:12:52 2013

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021456001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (249 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	164
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	0.001

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score = 36.4 bits (84), Expect = 0.001
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 16/87 (18%)

Query: 75  TGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISI 134
            GDG CLF A+   +             +E  D+LR AV E +        +        
Sbjct: 1   PGDGNCLFHAVSDQLGDAG--------RQELHDELREAVVEYL--------RENREDFEK 44

Query: 135 TIDESLKRYCQRIGRSDFWGGESELLV 161
            ++E    Y + I +   WGG  E+  
Sbjct: 45  FLEEDENEYYKWISKDGAWGGNIEIFA 71

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	164
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.89
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.73
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.55
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.21
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.55
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.18
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	98.05
KOG3991	256	consensus Uncharacterized conserved protein [Funct	97.32

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=1.1e-23  Score=180.54  Aligned_cols=88  Identities=24%  Similarity=0.462  Sum_probs=76.4

Q ss_pred             cCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhh-----hcchhhHH
Q 031210           67 ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALIS-----ITIDESLK  141 (164)
Q Consensus        67 ~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~-----~~~ee~fd  141 (164)
                      .+|.+++||+||||||+||+|||....+..+       +++.||...|+||+   +|.++|++||..     ...+++|+
T Consensus       157 ~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~-------~v~kLR~~~a~Ymr---~H~~df~pf~~~eet~d~~~~~~f~  226 (302)
T KOG2606|consen  157 RGLKMFDIPADGHCLYAAISHQLKLRSGKLL-------SVQKLREETADYMR---EHVEDFLPFLLDEETGDSLGPEDFD  226 (302)
T ss_pred             ccCccccCCCCchhhHHHHHHHHHhccCCCC-------cHHHHHHHHHHHHH---HHHHHhhhHhcCccccccCCHHHHH
Confidence            7999999999999999999999998766545       48899999999998   477778777764     12345899


Q ss_pred             HHHHHhcCCCccccHHhHhhccC
Q 031210          142 RYCQRIGRSDFWGGESELLVSTC  164 (164)
Q Consensus       142 ~Yc~~m~~~~~WGGeiEL~ALS~  164 (164)
                      +||++|++++.|||+|||.|||+
T Consensus       227 ~Yc~eI~~t~~WGgelEL~AlSh  249 (302)
T KOG2606|consen  227 KYCREIRNTAAWGGELELKALSH  249 (302)
T ss_pred             HHHHHhhhhccccchHHHHHHHH
Confidence            99999999999999999999985

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.73  E-value=5.4e-18  Score=125.24  Aligned_cols=68  Identities=34%  Similarity=0.667  Sum_probs=52.7

Q ss_pred             cCCCchhhHHHHHHHHhhc-CCCCCcchhhhhHHHHHHHHHHHHh-hcccCchhhHHHhhhhcchhhHHHHHHHhcCCCc
Q 031210           75 TGDGRCLFRALVKGMALNK-GINLNSREEREDADDLRMAVKEVIC-DSGSERRQYEEALISITIDESLKRYCQRIGRSDF  152 (164)
Q Consensus        75 pgDGnCLFRAIadQL~~~~-G~~~~~~~~~~~~~~LR~~vad~I~-~~~~~~~d~~e~fi~~~~ee~fd~Yc~~m~~~~~  152 (164)
                      |||||||||||++||...+ |.       ...+.+||+.++++|. .   +++.|.+++     +.+      +|+++++
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~-------~~~~~~lR~~~~~~l~~~---~~~~~~~~~-----~~~------~~~~~~~   59 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGS-------EDNHQELRKAVVDYLRDK---NRDKFEEFL-----EGD------KMSKPGT   59 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSS-------TTTHHHHHHHHHHHHHTH---TTTHHHHHH-----HHH------HHTSTTS
T ss_pred             CCCccHHHHHHHHHHHHhcCCC-------HHHHHHHHHHHHHHHHHh---ccchhhhhh-----hhh------hhccccc
Confidence            7999999999999999543 22       2468999999999997 4   344454444     222      9999999


Q ss_pred             cccHHhHhhcc
Q 031210          153 WGGESELLVST  163 (164)
Q Consensus       153 WGGeiEL~ALS  163 (164)
                      |||++||+|||
T Consensus        60 Wg~~~el~a~a   70 (121)
T PF02338_consen   60 WGGEIELQALA   70 (121)
T ss_dssp             HEEHHHHHHHH
T ss_pred             cCcHHHHHHHH
Confidence            99999999997

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.55  E-value=3.4e-15  Score=126.86  Aligned_cols=82  Identities=26%  Similarity=0.431  Sum_probs=69.1

Q ss_pred             cCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHHH
Q 031210           67 ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR  146 (164)
Q Consensus        67 ~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~~  146 (164)
                      .-+..+-||.|++|||+||++.+....+.         ...+||+.+++.+.   .+++.|.+++    ++++-.+||+|
T Consensus       108 gvl~~~vvp~DNSCLF~ai~yv~~k~~~~---------~~~elR~iiA~~Va---snp~~yn~Ai----LgK~n~eYc~W  171 (307)
T KOG3288|consen  108 GVLSRRVVPDDNSCLFTAIAYVIFKQVSN---------RPYELREIIAQEVA---SNPDKYNDAI----LGKPNKEYCAW  171 (307)
T ss_pred             ceeEEEeccCCcchhhhhhhhhhcCccCC---------CcHHHHHHHHHHHh---cChhhhhHHH----hCCCcHHHHHH
Confidence            34667788999999999999988853221         12589999999998   4778899998    58899999999


Q ss_pred             hcCCCccccHHhHhhccC
Q 031210          147 IGRSDFWGGESELLVSTC  164 (164)
Q Consensus       147 m~~~~~WGGeiEL~ALS~  164 (164)
                      |++...|||.|||.+||.
T Consensus       172 I~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  172 ILKMDSWGGAIELSILSD  189 (307)
T ss_pred             HccccccCceEEeeeehh
Confidence            999999999999999984

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.21  E-value=4.4e-12  Score=112.69  Aligned_cols=81  Identities=25%  Similarity=0.349  Sum_probs=67.9

Q ss_pred             hhcCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHH
Q 031210           65 KVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYC  144 (164)
Q Consensus        65 k~~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc  144 (164)
                      ++.|+.+..|.+||+|+|||++||++..          .+.++..|+++++++.    ..+++++-+    +.++|-+|+
T Consensus       214 ~~~g~e~~Kv~edGsC~fra~aDQvy~d----------~e~~~~~~~~~~dq~~----~e~~~~~~~----vt~~~~~y~  275 (371)
T KOG2605|consen  214 KHFGFEYKKVVEDGSCLFRALADQVYGD----------DEQHDHNRRECVDQLK----KERDFYEDY----VTEDFTSYI  275 (371)
T ss_pred             HHhhhhhhhcccCCchhhhccHHHhhcC----------HHHHHHHHHHHHHHHh----hcccccccc----cccchhhcc
Confidence            4479999999999999999999999952          2357788999999994    344444444    478999999


Q ss_pred             HHhcCCCccccHHhHhhcc
Q 031210          145 QRIGRSDFWGGESELLVST  163 (164)
Q Consensus       145 ~~m~~~~~WGGeiEL~ALS  163 (164)
                      ++++..+.||.++|++|++
T Consensus       276 k~kr~~~~~gnhie~Qa~a  294 (371)
T KOG2605|consen  276 KRKRADGEPGNHIEQQAAA  294 (371)
T ss_pred             cccccCCCCcchHHHhhhh
Confidence            9999999999999999987

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=6.9e-09  Score=89.67  Aligned_cols=89  Identities=8%  Similarity=0.025  Sum_probs=58.9

Q ss_pred             cCeEEEEecCCCchhhHHHHHHHHhhcC-CCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcc--hhhHHHH
Q 031210           67 ERYLVQRVTGDGRCLFRALVKGMALNKG-INLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITI--DESLKRY  143 (164)
Q Consensus        67 ~gL~i~eIpgDGnCLFRAIadQL~~~~G-~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~--ee~fd~Y  143 (164)
                      ..+.-.+++|||+|+|.+|+|||....- ..++      ....+|-.-..|..   .+...|..+..+...  -.+|++|
T Consensus       169 ~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~------~~~~dr~~~~~~~q---~~~i~f~g~hfD~~t~~m~~~dt~  239 (306)
T COG5539         169 TWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVD------KDSEDRYNSHPYVQ---RISILFTGIHFDEETLAMVLWDTY  239 (306)
T ss_pred             HhhhccccCCCceEEEeEeccccceeeeeeecc------hhHHhhccCChhhh---hhhhhhcccccchhhhhcchHHHH
Confidence            3555568899999999999999996421 1121      12345554444443   123334333321111  2479999


Q ss_pred             HHHhcCCCccccHHhHhhccC
Q 031210          144 CQRIGRSDFWGGESELLVSTC  164 (164)
Q Consensus       144 c~~m~~~~~WGGeiEL~ALS~  164 (164)
                      |+.|+.++.||+.+|+++||+
T Consensus       240 ~ne~~~~a~~g~~~ei~qLas  260 (306)
T COG5539         240 VNEVLFDASDGITIEIQQLAS  260 (306)
T ss_pred             HhhhcccccccchHHHHHHHH
Confidence            999999999999999999985

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=3.1e-06  Score=73.43  Aligned_cols=73  Identities=21%  Similarity=0.232  Sum_probs=60.8

Q ss_pred             EecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHHHhcCCCc
Q 031210           73 RVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDF  152 (164)
Q Consensus        73 eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~~m~~~~~  152 (164)
                      ....|..|+|++....++-            ....+||..|+-.+..   +++.|.++.    .+.+--.||.||.++..
T Consensus       116 p~~~d~srl~q~~~~~l~~------------asv~~lrE~vs~Ev~s---nPDl~n~~i----~~~~~i~y~~~i~k~d~  176 (306)
T COG5539         116 PGQDDNSRLFQAERYSLRD------------ASVAKLREVVSLEVLS---NPDLYNPAI----LEIDVIAYATWIVKPDS  176 (306)
T ss_pred             CCCCchHHHHHHHHhhhhh------------hhHHHHHHHHHHHHhh---Cccccchhh----cCcchHHHHHhhhcccc
Confidence            3348899999999998773            1467999999988874   666777776    46678899999999999


Q ss_pred             cc-cHHhHhhccC
Q 031210          153 WG-GESELLVSTC  164 (164)
Q Consensus       153 WG-GeiEL~ALS~  164 (164)
                      || |.+|+.+||.
T Consensus       177 ~~dG~ieia~iS~  189 (306)
T COG5539         177 QGDGCIEIAIISD  189 (306)
T ss_pred             CCCceEEEeEecc
Confidence            99 9999999984

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.05  E-value=1.1e-05  Score=67.05  Aligned_cols=52  Identities=12%  Similarity=0.130  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHH-HHhcCCCccccHHhHhhcc
Q 031210          108 DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYC-QRIGRSDFWGGESELLVST  163 (164)
Q Consensus       108 ~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc-~~m~~~~~WGGeiEL~ALS  163 (164)
                      .||..++.||+    .+.+++++|+......++++|| +.+.-.+.=.+++.+.||+
T Consensus       141 flRLlts~~l~----~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa  193 (244)
T PF10275_consen  141 FLRLLTSAYLK----SNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALA  193 (244)
T ss_dssp             HHHHHHHHHHH----HTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHH
T ss_pred             HHHHHHHHHHH----hhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHH
Confidence            45667777776    3444445554211127899999 5666777788999999997

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.32  E-value=0.00018  Score=60.95  Aligned_cols=51  Identities=12%  Similarity=0.152  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHHHhcCC-CccccHHhHhhccC
Q 031210          108 DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRS-DFWGGESELLVSTC  164 (164)
Q Consensus       108 ~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~~m~~~-~~WGGeiEL~ALS~  164 (164)
                      .||-.++-+|+    .+.+++++||.  -+.+.++||..=-.| ..=-|+|+|-|||.
T Consensus       158 ylRLvtS~~ik----~~adfy~pFI~--e~~tV~~fC~~eVEPm~kesdhi~I~ALs~  209 (256)
T KOG3991|consen  158 YLRLVTSGFIK----SNADFYQPFID--EGMTVKAFCTQEVEPMYKESDHIHITALSQ  209 (256)
T ss_pred             HHHHHHHHHHh----hChhhhhccCC--CCCcHHHHHHhhcchhhhccCceeHHHHHh
Confidence            45666777775    56677788862  246899999986666 34468999999974

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	164
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-12
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	2e-12
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	2e-11
3pfy_A	185	OTU domain-containing protein 5; structural genomi	1e-04

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score = 62.0 bits (150), Expect = 1e-12
 Identities = 21/117 (17%), Positives = 44/117 (37%), Gaps = 14/117 (11%)

Query: 45  NHLFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREERE 104
             L + ++       +P     + + + R  GDG C + ++ +    NK           
Sbjct: 7   RSLDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNKT---------- 56

Query: 105 DADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
             D     +K +     + R+ Y+E   +  +  SL+ Y +R+   + WG   E  +
Sbjct: 57  --DHSYHYIKRLTES--AARKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASM 109

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score = 61.7 bits (149), Expect = 2e-12
 Identities = 18/115 (15%), Positives = 42/115 (36%), Gaps = 14/115 (12%)

Query: 47  LFFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDA 106
           L + ++       +P     + + + R  GDG C + ++ +    N        +     
Sbjct: 9   LDWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPN--------KTDHSY 60

Query: 107 DDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
             ++   +         R+ Y+E   +  +  SL+ Y +R+   + WG   E  +
Sbjct: 61  HYIKRLTESAA------RKYYQEEPEARLVGLSLEDYLKRMLSDNEWGSTLEASM 109

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 58.8 bits (142), Expect = 2e-11
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 19/96 (19%)

Query: 67  ERYL-VQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERR 125
           E  L V  V  D  CLF A+  G+            +++   DLR  V + +    +   
Sbjct: 17  ENVLSVHPVLDDNSCLFHAIAYGI-----------FKQDSVRDLREMVSKEVL---NNPV 62

Query: 126 QYEEALISITIDESLKRYCQRIGRSDFWGGESELLV 161
           ++ +A     +D+  K Y Q I + + WGG  E+ +
Sbjct: 63  KFNDA----ILDKPNKDYAQWILKMESWGGAIEIGI 94

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score = 39.7 bits (92), Expect = 1e-04
 Identities = 13/93 (13%), Positives = 34/93 (36%), Gaps = 18/93 (19%)

Query: 69  YLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYE 128
           ++++++  DG CLFRA+   +  ++          +  + +R    + +         + 
Sbjct: 59  FIIKQMKEDGACLFRAVADQVYGDQ----------DMHEVVRKHCMDYLM---KNADYFS 105

Query: 129 EALISITIDESLKRYCQRIGRSDFWGGESELLV 161
                  + E    Y  R  +++  G   E+  
Sbjct: 106 N-----YVTEDFTTYINRKRKNNCHGNHIEMQA 133

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	164
3pfy_A	185	OTU domain-containing protein 5; structural genomi	99.92
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	99.91
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.89
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	99.87
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.51
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.26
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.24
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.09
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	96.36
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	92.77
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	84.56

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=99.92  E-value=6.2e-26  Score=182.82  Aligned_cols=81  Identities=17%  Similarity=0.383  Sum_probs=53.3

Q ss_pred             hcCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHH
Q 031210           66 VERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ  145 (164)
Q Consensus        66 ~~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~  145 (164)
                      .+||.+++||+|||||||||++||+..          ...+.+||+.+++||+.    +++++++|    ++++|++||+
T Consensus        56 ~~gL~~~~I~~DGnCLFrAia~qL~g~----------~~~h~~LR~~vv~yi~~----n~d~f~~F----v~~~~e~Y~~  117 (185)
T 3pfy_A           56 KKGFIIKQMKEDGACLFRAVADQVYGD----------QDMHEVVRKHCMDYLMK----NADYFSNY----VTEDFTTYIN  117 (185)
T ss_dssp             HHCCEEECCCCSTTHHHHHHHHHHHSC----------GGGHHHHHHHHHHHHHH----THHHHTTC----C---------
T ss_pred             HCCcEEEeeCCCCChHHHHHHHHHhCC----------chHHHHHHHHHHHHHHH----HHHHHHHH----HhccHHHHHH
Confidence            379999999999999999999999942          13588999999999984    44555566    3678999999


Q ss_pred             HhcCCCccccHHhHhhccC
Q 031210          146 RIGRSDFWGGESELLVSTC  164 (164)
Q Consensus       146 ~m~~~~~WGGeiEL~ALS~  164 (164)
                      +|+++++|||++||+|||.
T Consensus       118 ~m~~~~~WGg~iEL~AlS~  136 (185)
T 3pfy_A          118 RKRKNNCHGNHIEMQAMAE  136 (185)
T ss_dssp             --------CCHHHHHHHHH
T ss_pred             HhhCCCccchHHHHHHHHH
Confidence            9999999999999999983

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=99.91  E-value=2.3e-25  Score=182.19  Aligned_cols=79  Identities=28%  Similarity=0.537  Sum_probs=68.8

Q ss_pred             cCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHHH
Q 031210           67 ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR  146 (164)
Q Consensus        67 ~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~~  146 (164)
                      .+|.+++||+|||||||||++|| +.  .        ..+.+||+.+++||+.   +++.|.++|    ++++|++||++
T Consensus        18 ~~l~~~~i~~DGnCLFrAva~qL-~~--~--------~~~~~lR~~vv~yi~~---n~d~f~e~~----~~~~~e~Y~~~   79 (212)
T 3by4_A           18 NVLSVHPVLDDNSCLFHAIAYGI-FK--Q--------DSVRDLREMVSKEVLN---NPVKFNDAI----LDKPNKDYAQW   79 (212)
T ss_dssp             SEEEEECCCCSTTHHHHHHHHHH-HS--S--------CCSHHHHHHHHHHHHH---CTTTTCHHH----HTSCHHHHHHH
T ss_pred             CCeEEEEeCCCCchHHHHHHHHh-CC--c--------hHHHHHHHHHHHHHHH---CHHHHhhhh----cCCCHHHHHHH
Confidence            57999999999999999999999 52  1        2467999999999984   555665777    47899999999


Q ss_pred             hcCCCccccHHhHhhcc
Q 031210          147 IGRSDFWGGESELLVST  163 (164)
Q Consensus       147 m~~~~~WGGeiEL~ALS  163 (164)
                      |+++++|||++||+|||
T Consensus        80 m~~~~~WGg~iEL~Als   96 (212)
T 3by4_A           80 ILKMESWGGAIEIGIIS   96 (212)
T ss_dssp             TTSTTSCCCHHHHHHHH
T ss_pred             hcCCCEEccHHHHHHHH
Confidence            99999999999999998

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=99.89  E-value=9e-24  Score=169.84  Aligned_cols=103  Identities=17%  Similarity=0.234  Sum_probs=77.1

Q ss_pred             eeeeccCCCCCCchhhhhhcCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhh
Q 031210           48 FFARIGPPLGGGSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQY  127 (164)
Q Consensus        48 ~~~~~~~~~~~~~~~~~k~~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~  127 (164)
                      .|+++-..-+=..|......+|.+.+||+|||||||||++||+...  ..  ...+..+.+||+.+++||+.   ++++ 
T Consensus        10 ~~~~~~~~~~~~~p~~~~~~~~~v~rv~gDGnCLFrAva~qL~~~~--~~--~~~~~~~~~LR~~~~~yi~~---~~~~-   81 (185)
T 3phx_A           10 DWTQVIAGQYVSNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--TD--HSYHYIKRLTESAARKYYQE---EPEA-   81 (185)
T ss_dssp             CCEEEETTEEEECCCCBHHHHEEEECCCSSTTHHHHHHHHHHSTTC--CT--TTHHHHHHHHHHHHHHHGGG---CTTH-
T ss_pred             ceeeecccceecCCCcccccCeEEEccCCCCchHHHHHHHHHhCCC--cc--chhhhHHHHHHHHHHHHHHh---ChHh-
Confidence            3444433333344566666789999999999999999999999531  11  11223488999999999984   3333 


Q ss_pred             HHHhhhhcchhhHHHHHHHhcCCCccccHHhHhhccC
Q 031210          128 EEALISITIDESLKRYCQRIGRSDFWGGESELLVSTC  164 (164)
Q Consensus       128 ~e~fi~~~~ee~fd~Yc~~m~~~~~WGGeiEL~ALS~  164 (164)
                        ++    ++++|++||++|+++++|||++||+|||.
T Consensus        82 --~~----~~~~~~~Y~~~m~~~~~WGg~iEL~Als~  112 (185)
T 3phx_A           82 --RL----VGLSLEDYLKRMLSDNEWGSTLEASMLAK  112 (185)
T ss_dssp             --HH----HCCCHHHHHHHHTSTTCCCBHHHHHHHHH
T ss_pred             --hh----cCCCHHHHHHHhhCCCccCcHHHHHHHHH
Confidence              33    58899999999999999999999999973

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=99.87  E-value=7.5e-23  Score=168.71  Aligned_cols=91  Identities=20%  Similarity=0.310  Sum_probs=72.0

Q ss_pred             CchhhhhhcCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchh
Q 031210           59 GSPVMKKVERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDE  138 (164)
Q Consensus        59 ~~~~~~k~~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee  138 (164)
                      ..|......+|.|++||||||||||||++||+..+  ..  ...+..+.+||+.+++||+.   ++ +.  ++    +++
T Consensus        21 ~~p~~~~~~~~~V~rvpgDGnCLFrAVs~qL~~~~--~~--~~~~~~h~~LR~~va~yi~~---n~-d~--~~----~~~   86 (219)
T 3phu_A           21 SNPRFNISDYFEIVRQPGDGNCFYHSIAELTMPNK--TD--HSYHYIKRLTESAARKYYQE---EP-EA--RL----VGL   86 (219)
T ss_dssp             ECCCCBHHHHEEEECCCCSSCHHHHHHHHHHCTTC--CT--TTHHHHHHHHHHHHHHHGGG---CH-HH--HH----HCC
T ss_pred             cCCCcccccceEEEccCCCCchHHHHHHHHHhCCC--cc--chhhhHHHHHHHHHHHHHHh---Ch-hh--hh----cCC
Confidence            34556666789999999999999999999998531  11  11223488999999999984   33 33  33    588


Q ss_pred             hHHHHHHHhcCCCccccHHhHhhcc
Q 031210          139 SLKRYCQRIGRSDFWGGESELLVST  163 (164)
Q Consensus       139 ~fd~Yc~~m~~~~~WGGeiEL~ALS  163 (164)
                      +|++||++|+++++|||++||+|||
T Consensus        87 ~feeY~~~m~~~g~WGG~iEL~AlS  111 (219)
T 3phu_A           87 SLEDYLKRMLSDNEWGSTLEASMLA  111 (219)
T ss_dssp             CHHHHHHHHHSTTCCCCHHHHHHHH
T ss_pred             CHHHHHHHhcCCCccCCHHHHHHHH
Confidence            9999999999999999999999997

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.51  E-value=2e-14  Score=118.85  Aligned_cols=53  Identities=13%  Similarity=0.220  Sum_probs=42.5

Q ss_pred             HHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHH-HhcCCCccccHHhHhhccC
Q 031210          106 ADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWGGESELLVSTC  164 (164)
Q Consensus       106 ~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~-~m~~~~~WGGeiEL~ALS~  164 (164)
                      ...||..++.||+.    +.+++++|+.  .+.+|++||+ .|+.+++||||+||+|||.
T Consensus       132 v~~lR~lta~~i~~----~~d~f~pFi~--~~~~~~~yC~~~ve~~~~~~~~iei~ALa~  185 (234)
T 1tff_A          132 VQFLRLLTSAFIRN----RADFFRHFID--EEMDIKDFCTHEVEPMATECDHIQITALSQ  185 (234)
T ss_dssp             HHHHHHHHHHHHHH----THHHHGGGSC--TTSCHHHHHHHHTSSTTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CHHHHhhhhc--CCCCHHHHHHHHhhhhhcccccHHHHHHHH
Confidence            45689999999983    4556666652  2348999999 8999999999999999973

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.26  E-value=5.9e-12  Score=110.74  Aligned_cols=52  Identities=13%  Similarity=0.197  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHH-HhcCCCccccHHhHhhcc
Q 031210          106 ADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWGGESELLVST  163 (164)
Q Consensus       106 ~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~-~m~~~~~WGGeiEL~ALS  163 (164)
                      ...||..++.||+.    +.+++++|+.  .+.++++||+ .|+.+++||||+||.|||
T Consensus       300 v~~lRllts~~i~~----~~d~f~pFi~--~~~~v~~yc~~~ve~~~~e~d~l~I~ALa  352 (399)
T 4ddg_A          300 VVYLRLLTSGYLQR----ESKFFEHFIE--GGRTVKEFCQQEVEPMCKESDHIHIIALA  352 (399)
T ss_dssp             HHHHHHHHHHHHHH----THHHHGGGSS--SSCCHHHHHHHHTSSTTCCBCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CHHHHhcccC--CCCCHHHHHHHhceeHHhhCcHHHHHHHH
Confidence            44589999999973    4555556641  2347999999 999999999999999997

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.24  E-value=1e-11  Score=105.74  Aligned_cols=52  Identities=10%  Similarity=0.052  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHH-HhcCCCccccHHhHhhcc
Q 031210          106 ADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWGGESELLVST  163 (164)
Q Consensus       106 ~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~-~m~~~~~WGGeiEL~ALS  163 (164)
                      ...||..++.||+.    |.+++++|+.  .+.++++||+ +|+.+++|||++||.|||
T Consensus       170 v~~LRllts~yi~~----~~d~f~pFi~--~~~~v~~yC~~eVe~~~~e~d~leI~ALa  222 (284)
T 4dhi_B          170 LMFFRLITSAFLKQ----NSEEYAPFID--EGMTVAQYCEQEIEPMWKDADHLAINSLI  222 (284)
T ss_dssp             HHHHHHHHHHHHHH----THHHHGGGSC--TTCCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH----CHHHHHhhcC--CCCCHHHHHHHhceehhhcccHHHHHHHH
Confidence            44689999999983    4455555641  2358999999 899999999999999997

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.09  E-value=5.5e-11  Score=98.09  Aligned_cols=72  Identities=11%  Similarity=0.089  Sum_probs=58.0

Q ss_pred             CCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHH-HhcCCCccc
Q 031210           76 GDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQ-RIGRSDFWG  154 (164)
Q Consensus        76 gDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~-~m~~~~~WG  154 (164)
                      .||+||++++.+|+.-.           .....||..++.||+.    +++++++|+.  .+.+|++||+ .|+.+++||
T Consensus       116 ~~~~~L~~~fndq~~s~-----------~~v~~lR~lta~yi~~----~~d~f~pFi~--~~~~~e~yc~~~ve~~~~~~  178 (234)
T 2zfy_A          116 TSVADLLASFNDQSTSD-----------YLVVYLRLLTSGYLQR----ESKFFEHFIE--GGRTVKEFCQQEVEPMCKES  178 (234)
T ss_dssp             CCHHHHHHHHTSHHHHH-----------HHHHHHHHHHHHHHHH----THHHHGGGCC--SSCCHHHHHHHHTSSTTCCC
T ss_pred             CCHHHHHHHHHhhccch-----------HHHHHHHHHHHHHHHH----CHHHHhcccC--CCCCHHHHHHHHhhhHhhcC
Confidence            39999999999998632           2467899999999983    4555666652  2348999997 699999999


Q ss_pred             cHHhHhhccC
Q 031210          155 GESELLVSTC  164 (164)
Q Consensus       155 GeiEL~ALS~  164 (164)
                      ||+||+|||.
T Consensus       179 ~~i~i~ALa~  188 (234)
T 2zfy_A          179 DHIHIIALAQ  188 (234)
T ss_dssp             CHHHHHHHHH
T ss_pred             CHHHHHHHHH
Confidence            9999999973

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=96.36  E-value=0.0015  Score=53.50  Aligned_cols=40  Identities=18%  Similarity=0.434  Sum_probs=27.8

Q ss_pred             ccCCCCCCchh-hhhh----cCe-EEEEecCCCchhhHHHHHHHHh
Q 031210           52 IGPPLGGGSPV-MKKV----ERY-LVQRVTGDGRCLFRALVKGMAL   91 (164)
Q Consensus        52 ~~~~~~~~~~~-~~k~----~gL-~i~eIpgDGnCLFRAIadQL~~   91 (164)
                      +..+.++..|+ .+|+    ..| .+++|.|||||.|||++.++-.
T Consensus        20 L~~eY~~~~~~~~~K~~~L~~~y~~~R~vRgDGNCFyRaf~f~ylE   65 (234)
T 2zfy_A           20 LYKEYAEDDNIYQQKIKDLHKKYSYIRKTRPDGNCFYRAFGFSHLE   65 (234)
T ss_dssp             GGGGSCTTCHHHHHHHHHHTTTCCEEECBCCSSCHHHHHHHHHHHH
T ss_pred             HHHHHccCCHHHHHHHHHHHHhccceeeccCCccHHHHHHHHHHHH
Confidence            44555534444 3344    234 5789999999999999998875

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=92.77  E-value=0.1  Score=45.87  Aligned_cols=42  Identities=24%  Similarity=0.328  Sum_probs=30.1

Q ss_pred             CeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHhh
Q 031210           68 RYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVICD  119 (164)
Q Consensus        68 gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~~  119 (164)
                      .|......||||||.+|++-.|++...+.          --||+...+.|..
T Consensus       111 rL~pL~t~GDGnCLLHAvSqamWGv~Drd----------lvLRkaL~~~L~~  152 (390)
T 3dkb_A          111 KLVALKTNGDGNCLMHATSQYMWGVQDTD----------LVLRKALFSTLKE  152 (390)
T ss_dssp             CEEEBCCCCSSCHHHHHHHHHHHSSCSTT----------CHHHHHHHHHHHH
T ss_pred             ceEEEEecCCCchHHHHHhHHhcCCCCHh----------HHHHHHHHHHHHh
Confidence            35555668999999999999999532222          2677777777753

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=84.56  E-value=0.45  Score=42.61  Aligned_cols=51  Identities=20%  Similarity=0.270  Sum_probs=32.5

Q ss_pred             CCchhhhh-h-cCeEEEEecCCCchhhHHHHHHHHhhcCCCCCcchhhhhHHHHHHHHHHHHh
Q 031210           58 GGSPVMKK-V-ERYLVQRVTGDGRCLFRALVKGMALNKGINLNSREEREDADDLRMAVKEVIC  118 (164)
Q Consensus        58 ~~~~~~~k-~-~gL~i~eIpgDGnCLFRAIadQL~~~~G~~~~~~~~~~~~~~LR~~vad~I~  118 (164)
                      ||...+-. + ..|.-....||||||-+|++-.|+   |.+-       ..--||+...+.|.
T Consensus       176 NW~~e~~~~~~~rL~pL~t~GDGNCLLHAvSqamW---GV~D-------rdlvLRkaL~~~L~  228 (454)
T 3zrh_A          176 NWSLELATRLDSRLYALWNRTAGDCLLDSVLQATW---GIYD-------KDSVLRKALHDSLH  228 (454)
T ss_dssp             SCCHHHHTTTCCCEEEBCCCCSSCHHHHHHHHTTT---SSCC-------GGGHHHHHHHHHHH
T ss_pred             cchhhhccccccceeEeeecCCCccHHHHHHHHhh---cccC-------CcHHHHHHHHHHHH
Confidence            45554421 2 244445668999999999999999   4432       12256777666664

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	164
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.36

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.5e-13  Score=107.52  Aligned_cols=50  Identities=12%  Similarity=0.212  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHhhcccCchhhHHHhhhhcchhhHHHHHHH-hcCCCccccHHhHhhcc
Q 031210          108 DLRMAVKEVICDSGSERRQYEEALISITIDESLKRYCQR-IGRSDFWGGESELLVST  163 (164)
Q Consensus       108 ~LR~~vad~I~~~~~~~~d~~e~fi~~~~ee~fd~Yc~~-m~~~~~WGGeiEL~ALS  163 (164)
                      .||..++.||+.   + .+++.+|+  +.+.++++||.+ |..+++|||++||.|||
T Consensus       128 ~lR~l~s~~i~~---~-~~~y~~Fi--~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa  178 (228)
T d1tffa_         128 FLRLLTSAFIRN---R-ADFFRHFI--DEEMDIKDFCTHEVEPMATECDHIQITALS  178 (228)
T ss_dssp             HHHHHHHHHHHH---T-HHHHGGGS--CTTSCHHHHHHHHTSSTTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHH---C-HHHHHhHh--cCCccHHHHHHHHHccccccCCcHHHHHHH
Confidence            469999999973   3 44445554  234579999986 89999999999999997