Citrus Sinensis ID: 031253

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160---
Protein Sequence
MDRNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccccccHHHHHHHHHHHHHHcccEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHEcccccEEEccccEEEccccccccccccccHHHHHHHHHHHHccEEEEcHccccc
Coil and Loop (DISEMBL)
mdrnnvtmcikgcgfygskenknmcsKCYDDYLKAELIAKSSKLLDaakkpigptnapnpsvldkswppqwIISAakttnnsnavdsrtiesgaagssvKRRCEICNKKVGLIEfkcrcghlycgthrypkehactfdfkkfdremlvkdnpliradklegri
Flexible Loop (DISEMBL)
mdrnnvtmcikgcgfygskenknMCSKCYDDYLKAELIAKSSKLLDAAKKpigptnapnpsvldkswPPQWIISAAkttnnsnavdsrtiesgaagssvkrrCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKkfdremlvkdnpliradklegri
Low Complexity Region (SEG)
MDRNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIakssklldaakkPIGPTNAPNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI
Disordered region (IsUnstruct)
*****VTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKS*************************WPPQWIIS************************VKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDN************
Disordered Region (DISOPRED)
*****VT**IKGCGFYGSKENKNMCSKCYDDYLKAEL*****************************************************************CEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEG**
Disordered Region (DISEMBL)
MDRNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIE********KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI
Disordered Region (DISPRO)
***NNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAE***************************************************************KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDRNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	163	2.2.26 [Sep-21-2011]
Q6NNI8	168	Zinc finger A20 and AN1 d	yes	no	0.914	0.886	0.411	4e-26
O49663	176	Zinc finger A20 and AN1 d	no	no	0.920	0.852	0.382	9e-26
Q852K5	160	Zinc finger A20 and AN1 d	yes	no	0.828	0.843	0.361	3e-24
Q6Z541	224	Zinc finger A20 and AN1 d	no	no	0.828	0.602	0.440	4e-24
Q9STJ9	130	Zinc finger A20 and AN1 d	no	no	0.730	0.915	0.388	2e-23
Q5JN07	355	Zinc finger A20 and AN1 d	no	no	0.877	0.402	0.353	3e-23
Q9SZ69	175	Zinc finger A20 and AN1 d	no	no	0.865	0.805	0.369	5e-23
Q9SJM6	161	Zinc finger A20 and AN1 d	no	no	0.883	0.894	0.376	5e-23
Q7Y1W9	161	Zinc finger A20 and AN1 d	no	no	0.815	0.826	0.346	6e-22
Q852K6	169	Zinc finger A20 and AN1 d	no	no	0.920	0.887	0.339	1e-20

>sp|Q6NNI8|SAP1_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 1 OS=Arabidopsis thaliana GN=SAP1 PE=1 SV=1

 Score =  117 bits (292), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C+KGCGF+GS  N N+CSKCY D    E    S+K   A +K + P N P         
Sbjct: 18  LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKA--AVEKSLNP-NKPKTQPQQSQE 74

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
             Q ++ +  +++++   DS         S+  R C  CNKKVG+  FKCRCG  +CGTH
Sbjct: 75  ITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATR-CLSCNKKVGVTGFKCRCGSTFCGTH 133

Query: 128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           RYP+ H C FDFK   RE + K NP+++ADK++
Sbjct: 134 RYPESHECQFDFKGVAREAIAKANPVVKADKVD 166

May be involved in environmental stress response.
Arabidopsis thaliana (taxid: 3702)

>sp|O49663|SAP9_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Arabidopsis thaliana GN=SAP9 PE=2 SV=1

 Score =  115 bits (289), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 92/157 (58%), Gaps = 7/157 (4%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAEL-IAKSSKLLDAAKKPIGPTN---APNPSVL 63
           +C+KGCGF+GS  N ++CSKCY      E   A +   ++ + KP  P +   A  P+V+
Sbjct: 21  LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPAVV 80

Query: 64  DKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLY 123
            +  P +  +       +S+AV      S  A ++   RC  CNKKVG++ FKC+CG  +
Sbjct: 81  VEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTN---RCLCCNKKVGIMGFKCKCGSTF 137

Query: 124 CGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           CG HRYP+ H C+FDFK+  R  + K NP+++ADK++
Sbjct: 138 CGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQ 174

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q852K5|SAP6_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 6 OS=Oryza sativa subsp. japonica GN=SAP6 PE=2 SV=1

 Score =  110 bits (276), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/152 (36%), Positives = 78/152 (51%), Gaps = 17/152 (11%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C+  CGF+GS+  +NMCSKCY D +KA+ +A         KKP+             S 
Sbjct: 23  LCVNNCGFFGSRMTENMCSKCYRDTVKAKTVATV-----VEKKPLA------------SL 65

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
               +++      + +  D + +           RC  C KKVGL  FKCRCG  +C  H
Sbjct: 66  SSTPLVTEVTDGGSGSVADGKQVMEEDTPKPPSNRCLSCRKKVGLTGFKCRCGGTFCSMH 125

Query: 128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKL 159
           RY   H CTFD+K+  RE + K NPL++ADK+
Sbjct: 126 RYADSHKCTFDYKQVGREQIAKQNPLVKADKI 157

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z541|SAP12_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 12 OS=Oryza sativa subsp. japonica GN=SAP12 PE=2 SV=1

 Score =  110 bits (275), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 70/159 (44%), Positives = 86/159 (54%), Gaps = 24/159 (15%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAE--LIAKSSKLLDAAKK----PIGP-TNAPNP 60
           +C  GCGF+GSKE  NMCSKCY D+LKA   L + SS    A+      PI P T AP P
Sbjct: 80  LCSSGCGFFGSKETNNMCSKCYRDHLKATSPLFSSSSSPATASTTDITVPIAPATTAPTP 139

Query: 61  SVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCG 120
           S+  K        S++                         RC  C KKVGL+ F+CRCG
Sbjct: 140 SLKGKEEEATAAASSSAAAAAK-----------------PNRCVACRKKVGLLGFECRCG 182

Query: 121 HLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKL 159
             +C THR+  +HACTFDFKK DRE + K+NPLI A K+
Sbjct: 183 GTFCSTHRHADKHACTFDFKKSDREKIAKENPLIVAPKI 221

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9STJ9|SAP10_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 10 OS=Arabidopsis thaliana GN=SAP10 PE=2 SV=1

 Score =  108 bits (269), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 59/152 (38%), Positives = 80/152 (52%), Gaps = 33/152 (21%)

Query: 9   CIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSWP 68
           C  GCG YG++ N N+CS CY    K  ++  S  L                      + 
Sbjct: 10  CEGGCGLYGTRVNNNLCSLCY----KKSVLQHSPAL---------------------RFE 44

Query: 69  PQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHR 128
           P+   S      NS AV+   ++        KRRC IC +KVG++ FKCRCGH++CG+HR
Sbjct: 45  PETEQSQCCPPTNSPAVEEEPVK--------KRRCGICKRKVGMLGFKCRCGHMFCGSHR 96

Query: 129 YPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           YP+EH+C FD+K+  R  L    PLIRADKL+
Sbjct: 97  YPEEHSCPFDYKQSGRLALATQLPLIRADKLQ 128

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5JN07|SAP3_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 3 OS=Oryza sativa subsp. japonica GN=SAP3 PE=2 SV=2

 Score =  107 bits (267), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 59/167 (35%), Positives = 84/167 (50%), Gaps = 24/167 (14%)

Query: 7   TMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAP-------- 58
            +C  GCGFYG+    +MCS CY  +           LL+ A    GP+++         
Sbjct: 203 VLCASGCGFYGNPATLDMCSVCYRQHC----------LLNGATMATGPSSSVAAASAATV 252

Query: 59  --NPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFK 116
                  D    P   ++ A  ++ +N   +  +E  A  +    RC  C KKVGL+ F 
Sbjct: 253 ATGAVTSDSCSVPSAEVNGAAFSSKNNPEPATVVEKKAPAN----RCASCKKKVGLLGFA 308

Query: 117 CRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           CRCG  YCGTHRYP++HAC FDFK   R+ + + NPLI+ +KL  +I
Sbjct: 309 CRCGATYCGTHRYPEKHACGFDFKGASRDAIARANPLIKGEKLTNKI 355

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SZ69|SAP7_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Arabidopsis thaliana GN=SAP7 PE=1 SV=1

 Score =  107 bits (266), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 62/168 (36%), Positives = 92/168 (54%), Gaps = 27/168 (16%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAE----LIAKS-----------SKLLDAAKKPI 52
           +C  GCGF+GS  N N+CSKCY   L+AE     +AK+           S +    K P+
Sbjct: 18  LCDNGCGFFGSPSNMNLCSKCYRS-LRAEEDQTAVAKAAVKNSLKLPSCSIIAPGQKHPL 76

Query: 53  GPTNAPNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGL 112
               A   +V+  + P    ++A +      A  SR +           RC  CNKKVG+
Sbjct: 77  EIKPAHLETVVVTAEPSSVPVAAEQ----DEAEPSRPVRPN-------NRCFSCNKKVGV 125

Query: 113 IEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           + FKC+CG  +CG+HRYP++H C+FDFK+  R+ + K NPL++ADK++
Sbjct: 126 MGFKCKCGSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SJM6|SAP4_ARATH Zinc finger A20 and AN1 domain-containing stress-associated protein 4 OS=Arabidopsis thaliana GN=SAP4 PE=1 SV=1

 Score =  106 bits (265), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 58/154 (37%), Positives = 82/154 (53%), Gaps = 10/154 (6%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDY-LKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKS 66
           +C+  CGF+GS    N+CS CY D  LK +  A     ++++   + P  AP   VL+ +
Sbjct: 15  LCVNNCGFFGSSATMNLCSNCYGDLCLKQQQQASMKSTVESS---LSPVIAP---VLE-N 67

Query: 67  WPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGT 126
           +  +  I   K T     +   T +          RC +C K+VGL  F CRCG  +CG+
Sbjct: 68  YAAELEIPTTKKTEEKKPIQIPTEQPSPPQRP--NRCTVCRKRVGLTGFMCRCGTTFCGS 125

Query: 127 HRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           HRYP+ H CTFDFK   RE + K NPL+ A KL+
Sbjct: 126 HRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQ 159

May be involved in environmental stress response.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7Y1W9|SAP9_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 9 OS=Oryza sativa subsp. japonica GN=SAP9 PE=2 SV=1

 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 54/156 (34%), Positives = 76/156 (48%), Gaps = 23/156 (14%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C+  CGF+GS    NMCSKCY D++K   +A                    P V  K++
Sbjct: 22  LCVNNCGFFGSSMTNNMCSKCYRDFVKVTTMAA-------------------PVVEKKAF 62

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKR----RCEICNKKVGLIEFKCRCGHLY 123
            P             + V +  +E   A     +    RC  C KKVGL  F+CRCG  +
Sbjct: 63  TPASSSKTPLEPAKPDEVPAAAVEDKQAAQEPPKPPSNRCLSCRKKVGLTGFQCRCGGTF 122

Query: 124 CGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKL 159
           C THRY + H CTFD+KK  R+ + K NP++ A+K+
Sbjct: 123 CSTHRYTEAHDCTFDYKKAGRDQIAKQNPVVIAEKI 158

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q852K6|SAP7_ORYSJ Zinc finger A20 and AN1 domain-containing stress-associated protein 7 OS=Oryza sativa subsp. japonica GN=SAP7 PE=2 SV=1

 Score = 99.0 bits (245), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/159 (33%), Positives = 81/159 (50%), Gaps = 9/159 (5%)

Query: 5   NVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLD 64
              MC+ GCGF+GS+   NMCS+CY ++         S   DA ++     +      + 
Sbjct: 20  GAAMCVTGCGFFGSEATNNMCSRCYREH---------SADNDAVEEAAAANSDLELVGVA 70

Query: 65  KSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYC 124
           ++   +  +SA      +++  +   +  A  ++   RC  C KKVGL  FKCRCG  +C
Sbjct: 71  ETTTKKARMSAVVPVAVASSSSAAAEQPAAKAATAPNRCAACRKKVGLTGFKCRCGGNFC 130

Query: 125 GTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           G HR+   H C FD+K   +E + K NPL+ ADKL  RI
Sbjct: 131 GGHRHADAHGCGFDYKSAGKEQIAKQNPLVVADKLATRI 169

May be involved in environmental stress response.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
224136822	147	predicted protein [Populus trichocarpa]	0.877	0.972	0.487	2e-33
255539675	166	zinc finger protein, putative [Ricinus c	0.846	0.831	0.468	3e-31
224120194	147	predicted protein [Populus trichocarpa]	0.883	0.979	0.484	3e-31
224134549	130	predicted protein [Populus trichocarpa]	0.797	1.0	0.483	1e-29
225455582	152	PREDICTED: zinc finger A20 and AN1 domai	0.907	0.973	0.416	4e-27
225455543	153	PREDICTED: zinc finger A20 and AN1 domai	0.901	0.960	0.401	6e-27
225423783	189	PREDICTED: zinc finger A20 and AN1 domai	0.907	0.783	0.388	5e-25
297849616	169	hypothetical protein ARALYDRAFT_471394 [	0.920	0.887	0.398	1e-24
15221329	168	zinc finger A20 and AN1 domain-containin	0.914	0.886	0.411	2e-24
357512275	134	Zinc finger A20 and AN1 domain-containin	0.803	0.977	0.407	2e-24

>gi|224136822|ref|XP_002322424.1| predicted protein [Populus trichocarpa] gi|222869420|gb|EEF06551.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 103/164 (62%), Gaps = 21/164 (12%)

Query: 1   MDRNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSS-KLLDAAKKPIGPTNAPN 59
            D+    +C KGCGF+GS ENKN+CSKCY DYLK E+IAK++ KL +    P   ++  N
Sbjct: 4   QDKLTPALCAKGCGFFGSPENKNLCSKCYKDYLKEEVIAKTADKLSELVITP--SSDDKN 61

Query: 60  PSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRC 119
           P+V+                  SN   S T  + +A + +K RCE C KKVGL+ FKCRC
Sbjct: 62  PAVV------------------SNETASTTTATASATTVLKNRCECCGKKVGLMGFKCRC 103

Query: 120 GHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           G  +CG HRY KEH+CTFDFK FDR++L K NPL+  DKL+ RI
Sbjct: 104 GKTFCGVHRYAKEHSCTFDFKTFDRQILAKQNPLVAGDKLDARI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539675|ref|XP_002510902.1| zinc finger protein, putative [Ricinus communis] gi|223550017|gb|EEF51504.1| zinc finger protein, putative [Ricinus communis]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 75/160 (46%), Positives = 96/160 (60%), Gaps = 22/160 (13%)

Query: 1   MDRNNVTM----CIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTN 56
           MD  N ++    C +GCGF+GS EN+NMCSKCY DYLK E+IAK++             +
Sbjct: 1   MDSPNSSVTPPSCARGCGFFGSAENRNMCSKCYTDYLKQEIIAKTN-------------S 47

Query: 57  APNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFK 116
           AP PS    S     + +   T  N     +   E+  +    K RCE CNKKVG+  F 
Sbjct: 48  APEPSPASNS-----LSNKIATCINIKEAAAEEEETAKSVPVAKNRCESCNKKVGVTGFA 102

Query: 117 CRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRA 156
           CRCG + CGTHRYPKEH CTFDFK+ DR++LVK NPL++A
Sbjct: 103 CRCGKVLCGTHRYPKEHCCTFDFKRADRDLLVKQNPLVKA 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120194|ref|XP_002318269.1| predicted protein [Populus trichocarpa] gi|222858942|gb|EEE96489.1| predicted protein [Populus trichocarpa]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 79/163 (48%), Positives = 101/163 (61%), Gaps = 19/163 (11%)

Query: 1   MDRNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNP 60
           ++ + + +C KGCGF+GS EN+N CSKCY +YLK  LIA+ SK L    +PI  T    P
Sbjct: 4   INSSTLPLCAKGCGFFGSPENENFCSKCYKEYLKEGLIAEPSKKLS---EPIVVT----P 56

Query: 61  SVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCG 120
           S  D S  P  +     +T  + A  S+          VK RCE CNKKVGL+ F+CRCG
Sbjct: 57  SFDDNS--PDVVTDETTSTTTAVASTSK----------VKNRCECCNKKVGLMGFECRCG 104

Query: 121 HLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           + +CG HRYPKEH+CTFDFK  D++ L K NPL+  DKL  RI
Sbjct: 105 NTFCGVHRYPKEHSCTFDFKTLDQQNLAKQNPLVAGDKLGSRI 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134549|ref|XP_002321850.1| predicted protein [Populus trichocarpa] gi|222868846|gb|EEF05977.1| predicted protein [Populus trichocarpa]

 Score =  134 bits (338), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/153 (48%), Positives = 92/153 (60%), Gaps = 23/153 (15%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C KGCGF+GS ENKN+CSKCY DYLK E   K S+L+              PS  DK+ 
Sbjct: 1   LCAKGCGFFGSPENKNLCSKCYKDYLKEETANKLSELV------------ITPSSGDKN- 47

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
             Q ++S    +  S    + T+        +K RCE CNKKVGL+ FKCRCG  +CG H
Sbjct: 48  --QAVVSDETASTASTTASTSTV--------LKNRCECCNKKVGLMGFKCRCGKTFCGVH 97

Query: 128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           RY KEH+CTFDFK +DR+ L K NPL+  DKL 
Sbjct: 98  RYAKEHSCTFDFKTYDRQNLAKQNPLVAGDKLH 130

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455582|ref|XP_002269276.1| PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 7 [Vitis vinifera] gi|296084115|emb|CBI24503.3| unnamed protein product [Vitis vinifera]

 Score =  125 bits (315), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 65/156 (41%), Positives = 95/156 (60%), Gaps = 8/156 (5%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C+ GCGF+G+   +N+CSKCY D+LK E  A  +K   + +K +G T A   SV D   
Sbjct: 5   LCVNGCGFFGTPATQNLCSKCYKDFLKEEEEAAKAKT-KSMEKAMGSTVASTSSVDD--- 60

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
               ++++    + S+    +TI   ++      RCE C KKVG+I FKCRCG ++C  H
Sbjct: 61  ----VVTSMTQLSLSSENTKKTISDDSSTKKKVERCETCKKKVGIIGFKCRCGSMFCAEH 116

Query: 128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           R P++H C+FD+K   RE+L K  PLI+ DKLEGR+
Sbjct: 117 RLPEKHECSFDYKTMGREILKKQIPLIKPDKLEGRV 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455543|ref|XP_002267954.1| PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 9-like [Vitis vinifera]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/157 (40%), Positives = 94/157 (59%), Gaps = 10/157 (6%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C  GCGF+G+   +N+CSKCY D+LK E  +  +K++ + KK +GP      S+ D + 
Sbjct: 6   LCANGCGFFGTTATRNLCSKCYRDFLKEEEESTKTKVM-SMKKAMGPRVESTSSLDDVAT 64

Query: 68  P-PQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGT 126
              Q  +S   T   SN   S  ++S         +CE+C KK+G+I FKCRCG ++CG 
Sbjct: 65  SMAQLSLSLDNTKKTSNGDPSTKMKS--------EQCEMCKKKMGIIGFKCRCGSMFCGK 116

Query: 127 HRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           HR P++H C FD+K   RE+L K NP ++ +KL GR+
Sbjct: 117 HRLPEKHECNFDYKAMGREILRKQNPSLKPEKLPGRL 153

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423783|ref|XP_002277381.1| PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 7-like [Vitis vinifera]

 Score =  119 bits (297), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 61/157 (38%), Positives = 96/157 (61%), Gaps = 9/157 (5%)

Query: 7   TMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKS 66
           T+C  GCGF+G+   +N+CSKCY D+LK E  +  +K + + KK I P      S+ D +
Sbjct: 42  TLCANGCGFFGTPATQNLCSKCYRDFLKEEEESTKAKAM-SMKKAIRPRVESTSSLDDVA 100

Query: 67  WPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGT 126
                ++  + + +N+     +TI +G + +    +CE+C KKVG+I FKCRCG ++CG 
Sbjct: 101 IS---MVQLSLSFDNTK----KTI-NGNSSTKKSEQCEMCKKKVGIIGFKCRCGSMFCGK 152

Query: 127 HRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           HR P++H C FD+K   RE+L+K NP ++ +KL  R 
Sbjct: 153 HRLPEKHECNFDYKAMGREILMKQNPPLKPEKLPVRF 189

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297849616|ref|XP_002892689.1| hypothetical protein ARALYDRAFT_471394 [Arabidopsis lyrata subsp. lyrata] gi|297338531|gb|EFH68948.1| hypothetical protein ARALYDRAFT_471394 [Arabidopsis lyrata subsp. lyrata]

 Score =  118 bits (295), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 61/153 (39%), Positives = 86/153 (56%), Gaps = 3/153 (1%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C+KGCGF+GS  N N+CSKCY D    E    S+K   A +K + P N P         
Sbjct: 18  LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKA--AVEKSLNP-NKPKIQPQQSQE 74

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
             Q ++ +  +++++ +             S   RC  CNKKVG+  FKC+CG  +CGTH
Sbjct: 75  ITQGVLESGSSSSSTTSGGDLAAAPLDPPKSTATRCLSCNKKVGVTGFKCKCGSTFCGTH 134

Query: 128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           RYP+ H C FDFK   RE + K NP+++ADK+E
Sbjct: 135 RYPETHECEFDFKGVAREAIAKANPVVKADKVE 167

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15221329|ref|NP_172706.1| zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Arabidopsis thaliana] gi|30682777|ref|NP_849652.1| zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Arabidopsis thaliana] gi|73921294|sp|Q6NNI8.1|SAP1_ARATH RecName: Full=Zinc finger A20 and AN1 domain-containing stress-associated protein 1; Short=AtSAP1 gi|38566602|gb|AAR24191.1| At1g12440 [Arabidopsis thaliana] gi|40824063|gb|AAR92335.1| At1g12440 [Arabidopsis thaliana] gi|332190761|gb|AEE28882.1| zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Arabidopsis thaliana] gi|332190762|gb|AEE28883.1| zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Arabidopsis thaliana]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 63/153 (41%), Positives = 88/153 (57%), Gaps = 4/153 (2%)

Query: 8   MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKSW 67
           +C+KGCGF+GS  N N+CSKCY D    E    S+K   A +K + P N P         
Sbjct: 18  LCVKGCGFFGSPSNMNLCSKCYRDIRATEEQTASAKA--AVEKSLNP-NKPKTQPQQSQE 74

Query: 68  PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
             Q ++ +  +++++   DS         S+  R C  CNKKVG+  FKCRCG  +CGTH
Sbjct: 75  ITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATR-CLSCNKKVGVTGFKCRCGSTFCGTH 133

Query: 128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
           RYP+ H C FDFK   RE + K NP+++ADK++
Sbjct: 134 RYPESHECQFDFKGVAREAIAKANPVVKADKVD 166

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512275|ref|XP_003626426.1| Zinc finger A20 and AN1 domain-containing stress-associated protein [Medicago truncatula] gi|355501441|gb|AES82644.1| Zinc finger A20 and AN1 domain-containing stress-associated protein [Medicago truncatula]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 64/157 (40%), Positives = 87/157 (55%), Gaps = 26/157 (16%)

Query: 7   TMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPTNAPNPSVLDKS 66
           ++C  GCG+YG   NKN+CSKCY+ YLK  ++ +SS              + NPS+ D  
Sbjct: 4   SLCANGCGYYGLPSNKNLCSKCYNVYLKENIVLESS----------SSCPSKNPSINDIC 53

Query: 67  WPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGT 126
                 ++A    ++ N  + +T            RC+ CNKKVGL  FKCRCG ++CG 
Sbjct: 54  DA----VAAISLIDSDNMKEKKT------------RCKSCNKKVGLTGFKCRCGDVFCGM 97

Query: 127 HRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI 163
           HRYP+EH C  D KK  R++L K NPL   DKL+ RI
Sbjct: 98  HRYPEEHTCKVDLKKIGRQILEKQNPLCMGDKLKYRI 134

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	163
TAIR|locus:2034650	168	AT1G12440 [Arabidopsis thalian	0.914	0.886	0.385	5e-28
TAIR|locus:2138053	130	SAP10 "stress-associated prote	0.374	0.469	0.622	1.9e-26
TAIR|locus:504955427	125	AT4G14225 [Arabidopsis thalian	0.472	0.616	0.443	5.1e-26
TAIR|locus:2132649	176	AT4G22820 [Arabidopsis thalian	0.920	0.852	0.369	6.6e-26
TAIR|locus:2118036	175	SAP7 "stress-associated protei	0.907	0.845	0.354	6.8e-24
UNIPROTKB|E1BYN2	208	ZFAND6 "Uncharacterized protei	0.644	0.504	0.330	1.3e-23
TAIR|locus:2049505	161	AT2G36320 [Arabidopsis thalian	0.883	0.894	0.370	1.4e-23
TAIR|locus:2083208	170	AT3G52800 [Arabidopsis thalian	0.926	0.888	0.358	1.4e-23
GENEDB_PFALCIPARUM|PF08_0056	191	PF08_0056 "zinc finger protein	0.374	0.319	0.459	5.4e-23
UNIPROTKB|Q8IB20	191	PF08_0056 "Zinc finger protein	0.374	0.319	0.459	5.4e-23

TAIR|locus:2034650 AT1G12440 [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 59/153 (38%), Positives = 82/153 (53%)

Query:     8 MCIKGCGFYGSKENKNMCSKCYDDYLKAELIXXXXXXXXXXXXPIGPTNAPNPSVLDKSW 67
             +C+KGCGF+GS  N N+CSKCY D    E               + P N P         
Sbjct:    18 LCVKGCGFFGSPSNMNLCSKCYRDIRATE--EQTASAKAAVEKSLNP-NKPKTQPQQSQE 74

Query:    68 PPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTH 127
               Q ++ +  +++++   DS         S+  R C  CNKKVG+  FKCRCG  +CGTH
Sbjct:    75 ITQGVLGSGSSSSSTRGGDSAAAPLDPPKSTATR-CLSCNKKVGVTGFKCRCGSTFCGTH 133

Query:   128 RYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
             RYP+ H C FDFK   RE + K NP+++ADK++
Sbjct:   134 RYPESHECQFDFKGVAREAIAKANPVVKADKVD 166

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2138053 SAP10 "stress-associated protein 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.9e-26, Sum P(2) = 1.9e-26
 Identities = 38/61 (62%), Positives = 49/61 (80%)

Query:   100 KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKL 159
             KRRC IC +KVG++ FKCRCGH++CG+HRYP+EH+C FD+K+  R  L    PLIRADKL
Sbjct:    68 KRRCGICKRKVGMLGFKCRCGHMFCGSHRYPEEHSCPFDYKQSGRLALATQLPLIRADKL 127

Query:   160 E 160
             +
Sbjct:   128 Q 128

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

GO:0010038 "response to metal ion" evidence=IEP

GO:0010042 "response to manganese ion" evidence=IMP

GO:0010043 "response to zinc ion" evidence=IMP

GO:0010045 "response to nickel cation" evidence=IMP

GO:0034605 "cellular response to heat" evidence=IEP

GO:0070417 "cellular response to cold" evidence=IEP

GO:0071472 "cellular response to salt stress" evidence=IEP

GO:0006457 "protein folding" evidence=RCA

GO:0009408 "response to heat" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0042542 "response to hydrogen peroxide" evidence=RCA

TAIR|locus:504955427 AT4G14225 [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 5.1e-26, Sum P(2) = 5.1e-26
 Identities = 35/79 (44%), Positives = 49/79 (62%)

Query:    81 NSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFK 140
             N+ A +  T +      S K  C  C KKVGL+ F CRCGHL+  +HRYP+EH+C  D+K
Sbjct:    46 NTKAAEEVTAQEATVLGS-KGGCA-CKKKVGLLGFHCRCGHLFFASHRYPEEHSCPSDYK 103

Query:   141 KFDREMLVKDNPLIRADKL 159
                 ++L K NP+++ DKL
Sbjct:   104 SAAIDVLAKQNPVVKGDKL 122

GO:0003677 "DNA binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2132649 AT4G22820 [Arabidopsis thaliana (taxid:3702)]

 Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
 Identities = 58/157 (36%), Positives = 86/157 (54%)

Query:     8 MCIKGCGFYGSKENKNMCSKCYDDYLKAEL-IXXXXXXXXXXXXPIGPTN---APNPSVL 63
             +C+KGCGF+GS  N ++CSKCY      E               P  P +   A  P+V+
Sbjct:    21 LCVKGCGFFGSPSNMDLCSKCYRGICAEEAQTAVAKAAVEKSFKPSPPRSLFIAEPPAVV 80

Query:    64 DKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLY 123
              +  P +  +       +S+AV      S  A ++   RC  CNKKVG++ FKC+CG  +
Sbjct:    81 VEPKPEKAAVVVVSAEPSSSAVPEANEPSRPARTN---RCLCCNKKVGIMGFKCKCGSTF 137

Query:   124 CGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
             CG HRYP+ H C+FDFK+  R  + K NP+++ADK++
Sbjct:   138 CGEHRYPETHDCSFDFKEVGRGEIAKANPVVKADKIQ 174

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2118036 SAP7 "stress-associated protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 274 (101.5 bits), Expect = 6.8e-24, P = 6.8e-24
 Identities = 57/161 (35%), Positives = 86/161 (53%)

Query:     8 MCIKGCGFYGSKENKNMCSKCYDDYLKAELIXXXXXXXXXXXXPIGPTNAPNPSVL--DK 65
             +C  GCGF+GS  N N+CSKCY   L+AE                     P+ S++   +
Sbjct:    18 LCDNGCGFFGSPSNMNLCSKCYRS-LRAE----EDQTAVAKAAVKNSLKLPSCSIIAPGQ 72

Query:    66 SWP----PQWIISAAKTTNNSNAVDSRTIESGAAGSSVK--RRCEICNKKVGLIEFKCRC 119
               P    P  + +   T   S+   +   +       V+   RC  CNKKVG++ FKC+C
Sbjct:    73 KHPLEIKPAHLETVVVTAEPSSVPVAAEQDEAEPSRPVRPNNRCFSCNKKVGVMGFKCKC 132

Query:   120 GHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
             G  +CG+HRYP++H C+FDFK+  R+ + K NPL++ADK++
Sbjct:   133 GSTFCGSHRYPEKHECSFDFKEVGRDAIAKANPLVKADKVQ 173

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

UNIPROTKB|E1BYN2 ZFAND6 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 193 (73.0 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
 Identities = 35/106 (33%), Positives = 62/106 (58%)

Query:    55 TNAPNPSVLDKSWPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIE 114
             ++ P+ + +DK+ P    + A+  + N+        +S       K RC +C KKVGL  
Sbjct:   102 SSQPDSTAVDKTVPETEELQAS-VSENAEPTPEEQDKSLDKPKQKKNRCFMCRKKVGLTG 160

Query:   115 FKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
             F+CRCG++YCG HRY   H+C++++K    E + K+NP++  +K++
Sbjct:   161 FECRCGNVYCGMHRYSDVHSCSYNYKADAAEKIRKENPVVVGEKIQ 206

GO:0003677 "DNA binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006625 "protein targeting to peroxisome" evidence=IEA

GO:0031593 "polyubiquitin binding" evidence=IEA

GO:0042981 "regulation of apoptotic process" evidence=IEA

GO:0043122 "regulation of I-kappaB kinase/NF-kappaB cascade" evidence=IEA

GO:0071356 "cellular response to tumor necrosis factor" evidence=IEA

TAIR|locus:2049505 AT2G36320 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 57/154 (37%), Positives = 77/154 (50%)

Query:     8 MCIKGCGFYGSKENKNMCSKCYDDY-LKAELIXXXXXXXXXXXXPIGPTNAPNPSVLDKS 66
             +C+  CGF+GS    N+CS CY D  LK +               + P  AP   VL+ +
Sbjct:    15 LCVNNCGFFGSSATMNLCSNCYGDLCLKQQ---QQASMKSTVESSLSPVIAP---VLE-N 67

Query:    67 WPPQWIISAAKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGT 126
             +  +  I   K T     +   T +          RC +C K+VGL  F CRCG  +CG+
Sbjct:    68 YAAELEIPTTKKTEEKKPIQIPTEQPSPPQRP--NRCTVCRKRVGLTGFMCRCGTTFCGS 125

Query:   127 HRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
             HRYP+ H CTFDFK   RE + K NPL+ A KL+
Sbjct:   126 HRYPEVHGCTFDFKSAGREEIAKANPLVIAAKLQ 159

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2083208 AT3G52800 [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 56/156 (35%), Positives = 76/156 (48%)

Query:     8 MCIKGCGFYGSKENKNMCSKCYDDY-LKAELIXXXXXXXXXXXXPIGPTNAPNPSVLDKS 66
             +C+  CGF GS    N+CS CY D  LK +               + P ++ +  +    
Sbjct:    15 LCVNNCGFLGSSATMNLCSNCYGDLCLKQQQQSSSIKSTVESSLSVSPPSSSSSEISSPI 74

Query:    67 WPPQWIISAAKT-TNNSNAVDSR-TIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYC 124
              PP     + K       AV S  T E          RC  C K+VGL  FKCRCG ++C
Sbjct:    75 IPPLLKNPSVKLEVPEKKAVISLPTTEQNQ--QQRPNRCTTCRKRVGLTGFKCRCGTMFC 132

Query:   125 GTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLE 160
             G HRYP+ H C++DFK   RE + K NPL++A KL+
Sbjct:   133 GVHRYPEIHGCSYDFKSAGREEIAKANPLVKAAKLQ 168

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GENEDB_PFALCIPARUM|PF08_0056 PF08_0056 "zinc finger protein, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 188 (71.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query:   100 KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKL 159
             K +C  C+K++GL+  KCRC H +C  HRY   H CTFD+K + ++ L+K+N  + ADK+
Sbjct:   129 KSKCFFCSKRIGLVGIKCRCNHYFCSLHRYADAHNCTFDYKNYHKQQLIKNNVKVVADKV 188

Query:   160 E 160
             E
Sbjct:   189 E 189

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IB20 PF08_0056 "Zinc finger protein, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 188 (71.2 bits), Expect = 5.4e-23, Sum P(2) = 5.4e-23
 Identities = 28/61 (45%), Positives = 42/61 (68%)

Query:   100 KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKL 159
             K +C  C+K++GL+  KCRC H +C  HRY   H CTFD+K + ++ L+K+N  + ADK+
Sbjct:   129 KSKCFFCSKRIGLVGIKCRCNHYFCSLHRYADAHNCTFDYKNYHKQQLIKNNVKVVADKV 188

Query:   160 E 160
             E
Sbjct:   189 E 189

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q852K5	SAP6_ORYSJ	No assigned EC number	0.3618	0.8282	0.8437	yes	no
Q6NNI8	SAP1_ARATH	No assigned EC number	0.4117	0.9141	0.8869	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	163
smart00154	39	smart00154, ZnF_AN1, AN1-like Zinc finger	4e-11
pfam01428	43	pfam01428, zf-AN1, AN1-like Zinc finger	3e-08
pfam01754	25	pfam01754, zf-A20, A20-like zinc finger	4e-06

>gnl|CDD|197545 smart00154, ZnF_AN1, AN1-like Zinc finger

 Score = 54.3 bits (131), Expect = 4e-11
 Identities = 23/39 (58%), Positives = 28/39 (71%), Gaps = 1/39 (2%)

Query: 103 CEICNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFK 140
           C  C KKVGL  FKCR CG+L+CG HR P++H C  D+K
Sbjct: 1   CHFCRKKVGLTGFKCRHCGNLFCGEHRLPEDHDCPGDYK 39

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. Length = 39

>gnl|CDD|201791 pfam01428, zf-AN1, AN1-like Zinc finger

 Score = 47.1 bits (112), Expect = 3e-08
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)

Query: 106 CNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFKK 141
           C KK  L  FKCR CG  +C  HR P++H C   +K 
Sbjct: 6   CKKKDFLP-FKCRFCGGTFCLKHRLPEDHNCPGLYKS 41

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis. The following pattern describes the zinc finger. C-X2-C-X(9-12)-C-X(1-2)-C-X4-C-X2-H-X5-H-X-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Length = 43

>gnl|CDD|201955 pfam01754, zf-A20, A20-like zinc finger

 Score = 41.0 bits (97), Expect = 4e-06
 Identities = 13/22 (59%), Positives = 15/22 (68%)

Query: 8  MCIKGCGFYGSKENKNMCSKCY 29
           C  GCGFYGS   + +CSKCY
Sbjct: 3  KCTPGCGFYGSPATEGLCSKCY 24

The A20 Zn-finger of bovine/human Rabex5/rabGEF1 is a Ubiquitin Binding Domain. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. Length = 25

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	163
KOG3173	167	consensus Predicted Zn-finger protein [General fun	100.0
PF01754	25	zf-A20: A20-like zinc finger; InterPro: IPR002653	99.64
smart00259	26	ZnF_A20 A20-like zinc fingers. A20- (an inhibitor	99.59
smart00154	39	ZnF_AN1 AN1-like Zinc finger. Zinc finger at the C	99.53
PF01428	43	zf-AN1: AN1-like Zinc finger; InterPro: IPR000058	99.05
COG3582	162	Predicted nucleic acid binding protein containing	96.49
KOG3183	250	consensus Predicted Zn-finger protein [General fun	96.45
PF01363	69	FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc f	93.47
KOG3183	250	consensus Predicted Zn-finger protein [General fun	92.5
cd00065	57	FYVE FYVE domain; Zinc-binding domain; targets pro	92.37
smart00064	68	FYVE Protein present in Fab1, YOTB, Vac1, and EEA1	92.01
KOG1818	634	consensus Membrane trafficking and cell signaling	88.31
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	85.77
PF00130	53	C1_1: Phorbol esters/diacylglycerol binding domain	84.62

>KOG3173 consensus Predicted Zn-finger protein [General function prediction only]

Probab=100.00  E-value=4.6e-47  Score=304.00  Aligned_cols=151  Identities=38%  Similarity=0.796  Sum_probs=101.3

Q ss_pred             cccccccCCCCCCcccCCCchhhhhhHHHHHHHHh-hhhhhhccccCCCCCCCCCCCCCCCCCCCchh-hhhhhcc-ccC
Q 031253            5 NVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIA-KSSKLLDAAKKPIGPTNAPNPSVLDKSWPPQW-IISAAKT-TNN   81 (163)
Q Consensus         5 ~p~LCaNgCGFFGS~aT~nmCSKCYrd~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~   81 (163)
                      .++||+|||||||+|+|||||||||||++.++++. ...+..  +.+..++...     +........ ..+.... ...
T Consensus        14 ~~~lc~~gCGf~G~p~~~n~CSkC~~e~~~~~~~~~~~~~~~--~~~~~~~~~s-----~~~~~~~~~~~~~~~~~~~~~   86 (167)
T KOG3173|consen   14 QDLLCVNGCGFYGSPATENLCSKCYRDHLLRQQQKQARASPP--VESSLSSPRS-----VPSRDPPAVSLESTTESELKL   86 (167)
T ss_pred             cccccccCccccCChhhccHHHHHHHHHHHHhhhccccccCc--ccccccCccc-----cCccccccccccccccccccc
Confidence            35899999999999999999999999999888765 222211  1110000000     000000000 0000000 000


Q ss_pred             CCCCCCccccCCCCCCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhHHHHHHhCCccccccccc
Q 031253           82 SNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEG  161 (163)
Q Consensus        82 ~~~~~~~~~~~~~~~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l~k~np~v~~~k~~~  161 (163)
                      .....+...+........++||+.|+|||||+||.||||++||+.|||+|.|+|+||||.+||+.|+++||+|+++||+ 
T Consensus        87 ~~~~~s~~~~~~~~~~~~~~rC~~C~kk~gltgf~CrCG~~fC~~HRy~e~H~C~fDyK~~gr~~i~k~nP~v~a~k~~-  165 (167)
T KOG3173|consen   87 VSDTPSTEEEDEESKPKKKKRCFKCRKKVGLTGFKCRCGNTFCGTHRYPEQHDCSFDYKQAGREKIAKANPVVKADKLQ-  165 (167)
T ss_pred             cccCCcccccccccccccchhhhhhhhhhcccccccccCCcccccccCCccccccccHHHHHHHHHHHhCCeeeccccc-
Confidence            0000011111112233567899999999999999999999999999999999999999999999999999999999999 


Q ss_pred             CC
Q 031253          162 RI  163 (163)
Q Consensus       162 KI  163 (163)
                      ||
T Consensus       166 ki  167 (167)
T KOG3173|consen  166 KI  167 (167)
T ss_pred             cC
Confidence            98

>PF01754 zf-A20: A20-like zinc finger; InterPro: IPR002653 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.64  E-value=6e-17  Score=93.27  Aligned_cols=25  Identities=52%  Similarity=1.359  Sum_probs=21.0

Q ss_pred             ccccccCCCCCCcccCCCchhhhhh
Q 031253            6 VTMCIKGCGFYGSKENKNMCSKCYD   30 (163)
Q Consensus         6 p~LCaNgCGFFGS~aT~nmCSKCYr   30 (163)
                      |+||++|||||||++|+||||||||
T Consensus         1 ~~~C~~gCgf~Gs~~~~~~Cs~C~~   25 (25)
T PF01754_consen    1 PSLCANGCGFYGSPATNGLCSKCYR   25 (25)
T ss_dssp             SSB-TTTSSSB-BGGGTTS-HHHHH
T ss_pred             CCcccCCCCCcccccccCcchhhcC
Confidence            6799999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the zinc finger domain found in A20. A20 is an inhibitor of cell death that inhibits NF-kappaB activation via the tumour necrosis factor receptor associated factor pathway []. The zinc finger domains appear to mediate self-association in A20. These fingers also mediate IL-1-induced NF-kappa B activation. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003677 DNA binding, 0008270 zinc ion binding; PDB: 2FIF_F 2FID_B 2C7N_C 2C7M_A 2L00_A 2KZY_A 2EQG_A 2EQE_A 3OJ3_J 3OJ4_C ....

>smart00259 ZnF_A20 A20-like zinc fingers

Probab=99.59  E-value=2.5e-16  Score=91.44  Aligned_cols=25  Identities=40%  Similarity=1.162  Sum_probs=23.6

Q ss_pred             ccccc-cCCCCCCcccCCCchhhhhh
Q 031253            6 VTMCI-KGCGFYGSKENKNMCSKCYD   30 (163)
Q Consensus         6 p~LCa-NgCGFFGS~aT~nmCSKCYr   30 (163)
                      |+||+ +||||||||+|+||||||||
T Consensus         1 ~~~C~~~~CgF~G~~~t~~~CskCy~   26 (26)
T smart00259        1 PIKCRRPGCGFFGNPATEGLCSKCFK   26 (26)
T ss_pred             CCccccCCCCCcCChhhcccCHhhcC
Confidence            56899 99999999999999999996

A20- (an inhibitor of cell death)-like zinc fingers. The zinc finger mediates self-association in A20. These fingers also mediate IL-1-induced NF-kappaB activation.

>smart00154 ZnF_AN1 AN1-like Zinc finger

Probab=99.53  E-value=3.6e-15  Score=93.84  Aligned_cols=38  Identities=61%  Similarity=1.434  Sum_probs=36.9

Q ss_pred             cccccccccccceeee-cCcccccCccCCCCCCCcccch
Q 031253          103 CEICNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFK  140 (163)
Q Consensus       103 C~~C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk  140 (163)
                      |+.|+++++|++|+|+ |+.+||..||+||.|+|++|||
T Consensus         1 C~~C~~~~~l~~f~C~~C~~~FC~~HR~~e~H~C~~~~k   39 (39)
T smart00154        1 CHFCRKKVGLTGFKCRHCGNLFCGEHRLPEDHDCPGDYK   39 (39)
T ss_pred             CcccCCcccccCeECCccCCccccccCCccccCCccccC
Confidence            7899999999999999 9999999999999999999996

Zinc finger at the C-terminus of An1, a ubiquitin-like protein in Xenopus laevis.

>PF01428 zf-AN1: AN1-like Zinc finger; InterPro: IPR000058 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.05  E-value=4.9e-11  Score=75.99  Aligned_cols=38  Identities=45%  Similarity=1.019  Sum_probs=28.2

Q ss_pred             ccc--ccccccccceeee-cCcccccCccCCCCCCCcccchH
Q 031253          103 CEI--CNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFKK  141 (163)
Q Consensus       103 C~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk~  141 (163)
                      |..  |++++. ++|.|+ |+..||..||+|+.|+|+.+++.
T Consensus         1 C~~~~C~~~~~-~~~~C~~C~~~FC~~Hr~~e~H~C~~~~~~   41 (43)
T PF01428_consen    1 CSFPGCKKKDF-LPFKCKHCGKSFCLKHRLPEDHNCSKLQKK   41 (43)
T ss_dssp             -SSTTT--BCT-SHEE-TTTS-EE-TTTHSTTTCT-SSTTSC
T ss_pred             CccCcCcCccC-CCeECCCCCcccCccccCccccCCcchhhc
Confidence            455  999888 699999 99999999999999999999874

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the AN1-type zinc finger domain, which has a dimetal (zinc)-bound alpha/beta fold. This domain was first identified as a zinc finger at the C terminus of AN1 Q91889 from SWISSPROT, a ubiquitin-like protein in Xenopus laevis []. The AN1-type zinc finger contains six conserved cysteines and two histidines that could potentially coordinate 2 zinc atoms. Certain stress-associated proteins (SAP) contain AN1 domain, often in combination with A20 zinc finger domains (SAP8) or C2H2 domains (SAP16) []. For example, the human protein Znf216 has an A20 zinc-finger at the N terminus and an AN1 zinc-finger at the C terminus, acting to negatively regulate the NFkappaB activation pathway and to interact with components of the immune response like RIP, IKKgamma and TRAF6. The interact of Znf216 with IKK-gamma and RIP is mediated by the A20 zinc-finger domain, while its interaction with TRAF6 is mediated by the AN1 zinc-finger domain; therefore, both zinc-finger domains are involved in regulating the immune response []. The AN1 zinc finger domain is also found in proteins containing a ubiquitin-like domain, which are involved in the ubiquitination pathway []. Proteins containing an AN1-type zinc finger include: Ascidian posterior end mark 6 (pem-6) protein []. Human AWP1 protein (associated with PRK1), which is expressed during early embryogenesis []. Human immunoglobulin mu binding protein 2 (SMUBP-2), mutations in which cause muscular atrophy with respiratory distress type 1 []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 1WFP_A 1WYS_A 1WG2_A 1WFH_A 1X4W_A 1WFE_A 1WFL_A 1X4V_A.

>COG3582 Predicted nucleic acid binding protein containing the AN1-type Zn-finger [General function prediction only]

Probab=96.49  E-value=0.0013  Score=53.14  Aligned_cols=38  Identities=29%  Similarity=0.534  Sum_probs=30.0

Q ss_pred             ccccccccccccceeee-cCcccccCccCCCCCCCcccch
Q 031253          102 RCEICNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFK  140 (163)
Q Consensus       102 rC~~C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk  140 (163)
                      +|..|++..+| .++|. |++.||+.||+++.|+|.+...
T Consensus        99 ~~~~~g~~s~l-~~~c~~c~g~fc~~h~lp~nhdc~~L~s  137 (162)
T COG3582          99 TPQCTGKGSTL-AGKCNYCTGYFCAEHRLPENHDCNGLGS  137 (162)
T ss_pred             cceeccCCccc-cccccCCCCcceeceecccccccccHHH
Confidence            34445555444 67999 9999999999999999998765

>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]

Probab=96.45  E-value=0.00098  Score=56.92  Aligned_cols=40  Identities=28%  Similarity=0.869  Sum_probs=35.4

Q ss_pred             cccc--cccccccccceeee-cCcccccCccCCCCCCCcccchH
Q 031253          101 RRCE--ICNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFKK  141 (163)
Q Consensus       101 ~rC~--~C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk~  141 (163)
                      ..|.  .|+. |.++.|+|. |+.+||..||--+.|+|.+-|..
T Consensus         9 kHCs~~~Ckq-lDFLPf~Cd~C~~~FC~eHrsye~H~Cp~~~~~   51 (250)
T KOG3183|consen    9 KHCSVPYCKQ-LDFLPFKCDGCSGIFCLEHRSYESHHCPKGLRI   51 (250)
T ss_pred             cccCcchhhh-ccccceeeCCccchhhhccchHhhcCCCccccc
Confidence            4777  7865 799999999 99999999999999999998863

>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=93.47  E-value=0.041  Score=37.14  Aligned_cols=29  Identities=38%  Similarity=0.961  Sum_probs=17.5

Q ss_pred             ccccccccccccccc--ceeee-cCcccccCc
Q 031253           99 VKRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus        99 ~~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ....|..|+++.+|+  -..|| ||.+||+.+
T Consensus         8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~C   39 (69)
T PF01363_consen    8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSC   39 (69)
T ss_dssp             G-SB-TTT--B-BSSS-EEE-TTT--EEECCC
T ss_pred             CCCcCcCcCCcCCCceeeEccCCCCCEECCch
Confidence            457999999999995  48999 999999764

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....

>KOG3183 consensus Predicted Zn-finger protein [General function prediction only]

Probab=92.50  E-value=0.03  Score=48.00  Aligned_cols=41  Identities=32%  Similarity=0.868  Sum_probs=35.0

Q ss_pred             CCccccccc--ccccccccc-ceeee-cCcccccCccCCCCCCCc
Q 031253           96 GSSVKRRCE--ICNKKVGLI-EFKCR-CGHLYCGTHRYPKEHACT  136 (163)
Q Consensus        96 ~~~~~~rC~--~C~kk~gl~-gf~Cr-Cg~~fC~~HR~~~~H~C~  136 (163)
                      .+..+++|.  .|++++-+. .+.|+ ||..||-.||++-.|.|.
T Consensus        94 ~k~~t~kc~~~~c~k~~~~~~~~~c~~c~~~~c~khr~~~dhsc~  138 (250)
T KOG3183|consen   94 RKVFTNKCPVPRCKKTLTLANKITCSKCGRNFCLKHRHPLDHSCN  138 (250)
T ss_pred             cccccccCCchhhHHHHHHHHhhhhHhhcchhhhhccCCCCchhh
Confidence            445677787  688988874 69999 999999999999999997

>cd00065 FYVE FYVE domain; Zinc-binding domain; targets proteins to membrane lipids via interaction with phosphatidylinositol-3-phosphate, PI3P; present in Fab1, YOTB, Vac1, and EEA1;

Probab=92.37  E-value=0.055  Score=35.01  Aligned_cols=27  Identities=33%  Similarity=0.936  Sum_probs=23.5

Q ss_pred             ccccccccccccc--ceeee-cCcccccCc
Q 031253          101 RRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       101 ~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ..|..|.++.++.  ...|| ||.+||+.+
T Consensus         3 ~~C~~C~~~F~~~~rk~~Cr~Cg~~~C~~C   32 (57)
T cd00065           3 SSCMGCGKPFTLTRRRHHCRNCGRIFCSKC   32 (57)
T ss_pred             CcCcccCccccCCccccccCcCcCCcChHH
Confidence            5799999999994  68999 999999863

>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1

Probab=92.01  E-value=0.086  Score=35.43  Aligned_cols=29  Identities=31%  Similarity=0.894  Sum_probs=24.4

Q ss_pred             cccccccccccccc--ceeee-cCcccccCcc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTHR  128 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~HR  128 (163)
                      ...|..|+++.++.  ...|| ||.+||+.+-
T Consensus        10 ~~~C~~C~~~F~~~~rk~hCr~CG~i~C~~C~   41 (68)
T smart00064       10 VSNCMGCGKEFNLTKRRHHCRNCGRIFCSKCS   41 (68)
T ss_pred             CCcCcccCccccCcccccccccCCCCcChHHc
Confidence            46899999999984  68899 9999998643

The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the

>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.31  E-value=0.18  Score=48.46  Aligned_cols=44  Identities=27%  Similarity=0.717  Sum_probs=34.7

Q ss_pred             cccccccccccccccc--eeee-cCcccccCcc-----------CCCCCCCcccchHh
Q 031253           99 VKRRCEICNKKVGLIE--FKCR-CGHLYCGTHR-----------YPKEHACTFDFKKF  142 (163)
Q Consensus        99 ~~~rC~~C~kk~gl~g--f~Cr-Cg~~fC~~HR-----------~~~~H~C~~dyk~~  142 (163)
                      ...+|..|+.+.|+++  ..|| ||.+||+.|-           |-+.--|.-+|...
T Consensus       164 D~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E~l  221 (634)
T KOG1818|consen  164 DSEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYELL  221 (634)
T ss_pred             cccccceeeeeeeeccccccccccchhhccCccccccCcccccccccceehhhhHHHh
Confidence            4579999999999975  7999 9999999873           34556677777533

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=85.77  E-value=0.41  Score=27.57  Aligned_cols=22  Identities=27%  Similarity=0.591  Sum_probs=19.9

Q ss_pred             ccccccccccccceeee-cCccc
Q 031253          102 RCEICNKKVGLIEFKCR-CGHLY  123 (163)
Q Consensus       102 rC~~C~kk~gl~gf~Cr-Cg~~f  123 (163)
                      +|-.|++.|.+.--.|- ||+.|
T Consensus         2 ~CP~C~~~V~~~~~~Cp~CG~~F   24 (26)
T PF10571_consen    2 TCPECGAEVPESAKFCPHCGYDF   24 (26)
T ss_pred             cCCCCcCCchhhcCcCCCCCCCC
Confidence            68899999999889999 99887

Several members are annotated as putative helicases.

>PF00130 C1_1: Phorbol esters/diacylglycerol binding domain (C1 domain); InterPro: IPR002219 Diacylglycerol (DAG) is an important second messenger

Probab=84.62  E-value=0.53  Score=29.98  Aligned_cols=24  Identities=29%  Similarity=0.927  Sum_probs=18.6

Q ss_pred             cccccccccccc---cccceeee-cCcc
Q 031253           99 VKRRCEICNKKV---GLIEFKCR-CGHL  122 (163)
Q Consensus        99 ~~~rC~~C~kk~---gl~gf~Cr-Cg~~  122 (163)
                      .+..|..|++.|   ++.|++|+ |+.+
T Consensus        10 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~   37 (53)
T PF00130_consen   10 KPTYCDVCGKFIWGLGKQGYRCSWCGLV   37 (53)
T ss_dssp             STEB-TTSSSBECSSSSCEEEETTTT-E
T ss_pred             CCCCCcccCcccCCCCCCeEEECCCCCh
Confidence            467999999999   66899999 7654

Phorbol esters (PE) are analogues of DAG and potent tumour promoters that cause a variety of physiological changes when administered to both cells and tissues. DAG activates a family of serine/threonine protein kinases, collectively known as protein kinase C (PKC) []. Phorbol esters can directly stimulate PKC. The N-terminal region of PKC, known as C1, has been shown [] to bind PE and DAG in a phospholipid and zinc-dependent fashion. The C1 region contains one or two copies (depending on the isozyme of PKC) of a cysteine-rich domain, which is about 50 amino-acid residues long, and which is essential for DAG/PE-binding. The DAG/PE-binding domain binds two zinc ions; the ligands of these metal ions are probably the six cysteines and two histidines that are conserved in this domain.; GO: 0035556 intracellular signal transduction; PDB: 1RFH_A 2FNF_X 3PFQ_A 1PTQ_A 1PTR_A 2VRW_B 1XA6_A 2ENN_A 1TBN_A 1TBO_A ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	163
1wfp_A	74	Solution Structure Of The Zf-an1 Domain From Arabio		5e-12
1wfh_A	64	Solution Structrue Of The Zf-An1 Domain From Arabid		5e-11
1wg2_A	64	Solution Structure Of Zf-An1 Domain From Arabidopsi		5e-11
1wfl_A	74	Solution Structure Of The Zf-An1 Domain From Mouse		4e-09
1wff_A	85	Solution Structure Of The Zf-An1 Domain From Mouse		4e-09
1x4w_A	67	Solution Structure Of The Zf-An1 Domain From Human		2e-05

>pdb|1WFP|A Chain A, Solution Structure Of The Zf-an1 Domain From Arabiopsis Thaliana F5o11.17 Protein Length = 74

Iteration: 1
 Score = 67.0 bits (162), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 28/43 (65%), Positives = 31/43 (72%)
Query: 98  SVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFK 140
           S   RC  CNKKVG+  FKCRCG  +CGTHRYP+ H C FDFK
Sbjct: 23  STATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFK 65

>pdb|1WFH|A Chain A, Solution Structrue Of The Zf-An1 Domain From Arabidopsis Thaliana At2g36320 Protein Length = 64

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/39 (64%), Positives = 30/39 (76%)
Query: 102 RCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFK 140
           RC +C K+VGL  F CRCG  +CG+HRYP+ H CTFDFK
Sbjct: 17  RCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFK 55

>pdb|1WG2|A Chain A, Solution Structure Of Zf-An1 Domain From Arabidopsis Thaliana Length = 64

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 25/40 (62%), Positives = 34/40 (85%)
Query: 102 RCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKK 141
           RC  CNKKVG++ FKC+CG  +CG+HRYP++H C+FDFK+
Sbjct: 17  RCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKE 56

>pdb|1WFL|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Zinc Finger Protein 216 Length = 74

Iteration: 1
 Score = 57.4 bits (137), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 24/41 (58%), Positives = 30/41 (73%)
Query: 100 KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFK 140
           K RC +C KKVGL  F CRCG+L+CG HRY  +H C +D+K
Sbjct: 25  KNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYK 65

>pdb|1WFF|A Chain A, Solution Structure Of The Zf-An1 Domain From Mouse Riken Cdna 2810002d23 Protein Length = 85

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 99  VKRRCEICNKKVGL-IEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPL 153
           + + C +C KK GL   F+CRCG+ +C +HRY + H C +D+K   R  L + NP+
Sbjct: 24  IMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPV 79

>pdb|1X4W|A Chain A, Solution Structure Of The Zf-An1 Domain From Human Hypothetical Protein Flj13222 Length = 67

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 19/42 (45%), Positives = 29/42 (69%), Gaps = 3/42 (7%)
Query: 100 KRRCEICNKKVGLIEFK---CRCGHLYCGTHRYPKEHACTFD 138
           +RRC  C  K+ L++ +   CRCG+++C  HR P++H CTFD
Sbjct: 15  RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFD 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	163
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	1e-22
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	2e-20
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	2e-20
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	4e-20
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	1e-19
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	1e-17
2kzy_A	62	ZNF216-A20, zfand5 protein (zinc finger protein 21	2e-09
2c7n_A	74	Rabex-5, GEF 1, RAB guanine nucleotide exchange fa	3e-07

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Length = 85

 Score = 85.4 bits (211), Expect = 1e-22
 Identities = 23/58 (39%), Positives = 34/58 (58%), Gaps = 1/58 (1%)

Query: 100 KRRCEICNKKVGLIE-FKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRA 156
            + C +C KK GL   F+CRCG+ +C +HRY + H C +D+K   R  L + NP+   
Sbjct: 25  MKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGP 82

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Length = 74

 Score = 78.8 bits (194), Expect = 2e-20
 Identities = 28/68 (41%), Positives = 34/68 (50%)

Query: 78  TTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTF 137
           + ++                S   RC  CNKKVG+  FKCRCG  +CGTHRYP+ H C F
Sbjct: 3   SGSSGTRGGDSAAAPLDPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQF 62

Query: 138 DFKKFDRE 145
           DFK     
Sbjct: 63  DFKGVASG 70

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Length = 64

 Score = 78.3 bits (193), Expect = 2e-20
 Identities = 26/59 (44%), Positives = 36/59 (61%)

Query: 87  SRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDRE 145
           S      +       RC  CNKKVG++ FKC+CG  +CG+HRYP++H C+FDFK+    
Sbjct: 2   SSGSSGPSRPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSG 60

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1 Length = 64

 Score = 77.9 bits (192), Expect = 4e-20
 Identities = 26/61 (42%), Positives = 32/61 (52%)

Query: 87  SRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREM 146
           S       +      RC +C K+VGL  F CRCG  +CG+HRYP+ H CTFDFK      
Sbjct: 2   SSGSSGQPSPPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGP 61

Query: 147 L 147
            
Sbjct: 62  S 62

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1 Length = 74

 Score = 76.9 bits (189), Expect = 1e-19
 Identities = 24/69 (34%), Positives = 36/69 (52%)

Query: 76  AKTTNNSNAVDSRTIESGAAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHAC 135
             + ++  +      ++       K RC +C KKVGL  F CRCG+L+CG HRY  +H C
Sbjct: 1   GSSGSSGPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNC 60

Query: 136 TFDFKKFDR 144
            +D+K    
Sbjct: 61  PYDYKAEAS 69

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 67

 Score = 71.6 bits (175), Expect = 1e-17
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)

Query: 100 KRRCEICNKKVGLIEFK---CRCGHLYCGTHRYPKEHACTFDFKKFDREML 147
           +RRC  C  K+ L++ +   CRCG+++C  HR P++H CTFD         
Sbjct: 15  RRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS 65

>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A Length = 62

 Score = 50.1 bits (119), Expect = 2e-09
 Identities = 16/48 (33%), Positives = 24/48 (50%)

Query: 8  MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKKPIGPT 55
          +C  GCGFYG+     MCS CY ++L+ +  +     +  A     PT
Sbjct: 15 LCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSGRMSPMGTASGSNSPT 62

>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B Length = 74

 Score = 44.9 bits (105), Expect = 3e-07
 Identities = 12/43 (27%), Positives = 23/43 (53%)

Query: 8  MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAKSSKLLDAAKK 50
          +C KGCG+YG+   +  CSKC+ +        +  +  + A++
Sbjct: 18 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQIQEDWELAER 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	163
1wff_A	85	Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc	99.96
1wfh_A	64	Zinc finger (AN1-like) family protein; ZF-AN1 doma	99.93
1wg2_A	64	Zinc finger (AN1-like) family protein; riken struc	99.92
1wfl_A	74	Zinc finger protein 216; ZF-AN1 domain, zinc bindi	99.92
1wfp_A	74	Zinc finger (AN1-like) family protein; ZF-AN1 doma	99.91
1x4w_A	67	Hypothetical protein FLJ13222; ZF-AN1 domain, zinc	99.9
2kzy_A	62	ZNF216-A20, zfand5 protein (zinc finger protein 21	99.79
2c7n_A	74	Rabex-5, GEF 1, RAB guanine nucleotide exchange fa	99.74
3oj3_I	49	Tumor necrosis factor alpha-induced protein 3; ubi	99.68
1wfe_A	86	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	99.32
1x4v_A	63	Hypothetical protein LOC130617; ZF-AN1 domain, zin	99.3
1wys_A	75	Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc	99.21
2eqe_A	48	Tumor necrosis factor, alpha-induced protein 3; ZF	97.96
1vfy_A	73	Phosphatidylinositol-3-phosphate binding FYVE doma	92.8
1wfk_A	88	Zinc finger, FYVE domain containing 19; riken stru	92.07
2yw8_A	82	RUN and FYVE domain-containing protein 1; structur	91.69
1joc_A	125	EEA1, early endosomal autoantigen 1; FYVE domain,	91.46
1x4u_A	84	Zinc finger, FYVE domain containing 27 isoform B;	91.08
1z2q_A	84	LM5-1; membrane protein, FYVE domain, zinc-finger;	90.9
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	90.33
3t7l_A	90	Zinc finger FYVE domain-containing protein 16; str	89.96
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	89.68
1y02_A	120	CARP2, FYVE-ring finger protein sakura; zinc-bindi	88.14
2vrw_B	406	P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP	85.75
4b6d_A	61	RAC GTPase-activating protein 1; signaling protein	84.89

>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=99.96  E-value=1.4e-30  Score=187.64  Aligned_cols=62  Identities=37%  Similarity=0.944  Sum_probs=58.9

Q ss_pred             CCcccccccccccccccc-ceeeecCcccccCccCCCCCCCcccchHhhHHHHHHhCCccccc
Q 031253           96 GSSVKRRCEICNKKVGLI-EFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRAD  157 (163)
Q Consensus        96 ~~~~~~rC~~C~kk~gl~-gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l~k~np~v~~~  157 (163)
                      +++.++||+.|+|||||+ +|+||||++||+.|||+|+|+|+||||++||++|+|+||+|+++
T Consensus        21 ~k~~~~rC~~C~kkvgl~~~f~CrCg~~FC~~HRy~e~H~C~fDyK~~gr~~iak~NPvV~a~   83 (85)
T 1wff_A           21 KKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS   83 (85)
T ss_dssp             CCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred             CcccCccchhhCCeecccCCeEcCCCCEecccCCCccCCCCcchhhHHHHHHHHHHCCeecCC
Confidence            456689999999999995 99999999999999999999999999999999999999999986

>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=99.93  E-value=1.5e-27  Score=163.70  Aligned_cols=53  Identities=47%  Similarity=1.058  Sum_probs=50.0

Q ss_pred             CCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhHHHHH
Q 031253           96 GSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLV  148 (163)
Q Consensus        96 ~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l~  148 (163)
                      ++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|+
T Consensus        11 ~k~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~l~   63 (64)
T 1wfh_A           11 PPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPSS   63 (64)
T ss_dssp             CCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCCC
T ss_pred             CCCcCCcChhhCCccCccCEEeecCCEeccccCCcccCCCCchhhHHHHHHhc
Confidence            45668999999999999999999999999999999999999999999999875

>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=99.92  E-value=4.2e-27  Score=161.58  Aligned_cols=53  Identities=47%  Similarity=1.084  Sum_probs=49.5

Q ss_pred             CCCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhHHHH
Q 031253           95 AGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREML  147 (163)
Q Consensus        95 ~~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l  147 (163)
                      +++..++||+.|+|||||++|+||||++||+.|||||+|+|+||||++||++|
T Consensus        10 ~~~~~~~rC~~C~kkvgl~~f~CrCg~~FC~~HR~~e~H~C~fDyk~~gr~~~   62 (64)
T 1wg2_A           10 RPVRPNNRCFSCNKKVGVMGFKCKCGSTFCGSHRYPEKHECSFDFKEVGSGPS   62 (64)
T ss_dssp             CCSCCSCSCTTTCCCCTTSCEECTTSCEECSSSCSSTTTTCCCCCSCSCCCSC
T ss_pred             CCCCcCCcChhhCCcccccCeEeecCCEecccCCCccccCCCcchhHHhHHHh
Confidence            34456899999999999999999999999999999999999999999999877

>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=99.92  E-value=4.8e-26  Score=160.18  Aligned_cols=52  Identities=46%  Similarity=1.037  Sum_probs=48.1

Q ss_pred             CCCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhHHH
Q 031253           95 AGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREM  146 (163)
Q Consensus        95 ~~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~  146 (163)
                      +.++.+|||++|+|||||+||.||||++||+.|||+|+|+|+||||++||++
T Consensus        20 ~~k~~~nRC~~CrKkvgL~gf~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~   71 (74)
T 1wfl_A           20 LPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEASGP   71 (74)
T ss_dssp             CCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSSCC
T ss_pred             cCCCcCCcChhhCCcccccCeecCCCCEechhcCCCccCCCcchhhhhchhh
Confidence            3445689999999999999999999999999999999999999999999874

>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1

Probab=99.91  E-value=4.5e-26  Score=160.31  Aligned_cols=54  Identities=52%  Similarity=1.064  Sum_probs=50.2

Q ss_pred             CCCCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhHHHH
Q 031253           94 AAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREML  147 (163)
Q Consensus        94 ~~~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l  147 (163)
                      .++++.++||+.|+|||||++|+||||++||+.|||+|+|+|+||||++||++|
T Consensus        19 ~~~k~~~~RC~~C~kkvgL~~f~CrCg~~FCs~HRy~e~H~C~fDyk~~gr~~~   72 (74)
T 1wfp_A           19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVASGPS   72 (74)
T ss_dssp             CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCCCCC
T ss_pred             ccCcccCccchhhcCcccccceEeccCCEeccccCCCcCCCCcCchhHHhHHhh
Confidence            344567899999999999999999999999999999999999999999999876

>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.90  E-value=7.3e-26  Score=156.71  Aligned_cols=53  Identities=36%  Similarity=0.782  Sum_probs=48.6

Q ss_pred             CCCccccccccccccccccc---eeeecCcccccCccCCCCCCCcccchHhhHHHH
Q 031253           95 AGSSVKRRCEICNKKVGLIE---FKCRCGHLYCGTHRYPKEHACTFDFKKFDREML  147 (163)
Q Consensus        95 ~~~~~~~rC~~C~kk~gl~g---f~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l  147 (163)
                      ++++.++||+.|+|||||++   |+||||++||+.|||||+|+|+||||++||+.|
T Consensus        10 ~~~~~~~rC~~C~kk~gL~~~egf~CrCg~~FC~~HRy~e~H~C~fDyk~~gr~~~   65 (67)
T 1x4w_A           10 SKQKSRRRCFQCQTKLELVQQELGSCRCGYVFCMLHRLPEQHDCTFDHMGRGSGPS   65 (67)
T ss_dssp             CSCSCTTBCSSSCCBCCHHHHHHHCCSSSCCCCTTTCSTGGGTCSSCSSCSSCCCC
T ss_pred             cCCccCCcchhhCCeecccccCceEecCCCEehhccCCccccCCcccccccccccc
Confidence            34567899999999999984   999999999999999999999999999999865

>2kzy_A ZNF216-A20, zfand5 protein (zinc finger protein 216 (predicte isoform CRA_A); A20 domain, atrogene, metal binding Pro; NMR {Rattus norvegicus} PDB: 2l00_A

Probab=99.79  E-value=6.5e-20  Score=124.97  Aligned_cols=38  Identities=34%  Similarity=0.849  Sum_probs=33.4

Q ss_pred             CCcccccccCCCCCCcccCCCchhhhhhHHHHHHHHhh
Q 031253            3 RNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAELIAK   40 (163)
Q Consensus         3 ~~~p~LCaNgCGFFGS~aT~nmCSKCYrd~~~~~~~~~   40 (163)
                      +++|+||+|||||||||+|+|||||||||++++++...
T Consensus        10 ~~~~~lC~ngCGFfGnpaT~nlCSkCyr~~~~~~~~~~   47 (62)
T 2kzy_A           10 TPGPMLCSTGCGFYGNPRTNGMCSVCYKEHLQRQQNSG   47 (62)
T ss_dssp             CSCCCBCTTCCSSBCCTTTTSCCHHHHHHHHHHHHHHC
T ss_pred             CCcccchhhCCCCcCChhhcCcCHHHHHHHHHhhhccc
Confidence            45789999999999999999999999999987766543

>2c7n_A Rabex-5, GEF 1, RAB guanine nucleotide exchange factor 1; protein-binding, ubiquitin binding domain, endocytosis, NUCL protein, polyprotein; 2.1A {Homo sapiens} SCOP: g.39.1.15 PDB: 2c7m_A 2fif_B 2fid_B

Probab=99.74  E-value=7e-19  Score=123.25  Aligned_cols=35  Identities=31%  Similarity=0.829  Sum_probs=27.4

Q ss_pred             CCcccccccCCCCCCcccCCCchhhhhhHHHHHHH
Q 031253            3 RNNVTMCIKGCGFYGSKENKNMCSKCYDDYLKAEL   37 (163)
Q Consensus         3 ~~~p~LCaNgCGFFGS~aT~nmCSKCYrd~~~~~~   37 (163)
                      +++|+||+|||||||||+|+|||||||||++.++.
T Consensus        13 pe~~~lC~ngCGFfGnpaT~nlCSkCyrd~~~k~~   47 (74)
T 2c7n_A           13 DQSDLLCKKGCGYYGNPAWQGFCSKCWREEYHKAR   47 (74)
T ss_dssp             -----CCTTCSSSCCCGGGTTCCHHHHHHHHHHHH
T ss_pred             CCcchhHHhCCCCCCChhhcCccHHHHHHHHHHHH
Confidence            46788999999999999999999999999875543

>3oj3_I Tumor necrosis factor alpha-induced protein 3; ubiquitin, zinc finger, zinc ION, protein binding-hydrolase; 2.50A {Homo sapiens} PDB: 3oj4_C

Probab=99.68  E-value=1.1e-17  Score=108.72  Aligned_cols=30  Identities=33%  Similarity=0.971  Sum_probs=27.4

Q ss_pred             cccccc-cCCCCCCcccCCCchhhhhhHHHH
Q 031253            5 NVTMCI-KGCGFYGSKENKNMCSKCYDDYLK   34 (163)
Q Consensus         5 ~p~LCa-NgCGFFGS~aT~nmCSKCYrd~~~   34 (163)
                      +..||+ |||||||||+|+|||||||||++.
T Consensus        17 gq~lC~~ngCGFfG~p~t~n~CSkCyre~~e   47 (49)
T 3oj3_I           17 GTSKCRKAGCVYFGTPENKGFCTLCFIEYRE   47 (49)
T ss_dssp             CCCBCSSTTCSSBCBGGGTTBCHHHHHHHHH
T ss_pred             CccccccCCCCCccCcccCCcchHHHHHHHH
Confidence            347999 999999999999999999999865

>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1

Probab=99.32  E-value=2.9e-13  Score=97.48  Aligned_cols=59  Identities=19%  Similarity=0.396  Sum_probs=48.7

Q ss_pred             CCcccccccc--ccccccccceeee-cCcccccCccCCCCCCCcccchHhhHHHHHHhCCcccccccccCC
Q 031253           96 GSSVKRRCEI--CNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRADKLEGRI  163 (163)
Q Consensus        96 ~~~~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk~~~r~~l~k~np~v~~~k~~~KI  163 (163)
                      .+..++||..  |+++ +|++|.|+ |+.+||..|||++.|+|+..       .+.+.++...+.++. +|
T Consensus        21 ~~~~~~~C~~~~Ck~~-~~l~f~C~~C~~~FC~~HR~~e~H~C~~~-------~~~k~~~~~~~~l~~-~~   82 (86)
T 1wfe_A           21 DEHKSYSCSFKGCTDV-ELVAVICPYCEKNFCLRHRHQSDHDCEKL-------EVAKPRMAATQKLVR-SG   82 (86)
T ss_dssp             SCSCCEECCSTTCCCE-ESSCEECTTTCCEECGGGCSTGGGTCSSS-------SCCCSSCCCCCCCSS-CS
T ss_pred             cCCCCCCCCCcCCCCC-CccceECCCCCcccccccCCccCCCCCCC-------cccccchHHHHHHHH-HH
Confidence            3456799999  9998 88999999 99999999999999999974       336677777766666 54

>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=5.9e-13  Score=90.95  Aligned_cols=40  Identities=28%  Similarity=0.883  Sum_probs=37.0

Q ss_pred             CCcccccccc--ccccccccceeee-cCcccccCccCCCCCCCc
Q 031253           96 GSSVKRRCEI--CNKKVGLIEFKCR-CGHLYCGTHRYPKEHACT  136 (163)
Q Consensus        96 ~~~~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~  136 (163)
                      ++...+||..  |+++ +|++|.|+ |+.+||..|||+|.|+|.
T Consensus         8 ~k~~~~~Cs~~~Ck~~-~ll~f~C~~C~~~FC~~HR~~e~H~C~   50 (63)
T 1x4v_A            8 RKIFTNKCERAGCRQR-EMMKLTCERCSRNFCIKHRHPLDHDCS   50 (63)
T ss_dssp             CCTTCCCCCSTTCCCC-CSSCCBCSSSCCBCCHHHHSTTSSCCC
T ss_pred             CcccCCCCCccCCCCC-CccceECCCCCcccCcccCCccCCcCC
Confidence            3456899999  9998 99999999 999999999999999997

>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}

Probab=99.21  E-value=2.8e-12  Score=90.32  Aligned_cols=41  Identities=24%  Similarity=0.809  Sum_probs=38.6

Q ss_pred             ccccccc--ccccccccceeee-cCcccccCccCCCCCCCcccch
Q 031253           99 VKRRCEI--CNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTFDFK  140 (163)
Q Consensus        99 ~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk  140 (163)
                      ..+||..  |+++ ++++|+|+ |+.+||..|||++.|+|+++++
T Consensus        13 ~g~~Cs~~~C~~~-dflpf~C~~C~~~FC~~HR~~e~H~C~~~~~   56 (75)
T 1wys_A           13 IGQHCQVQHCRQR-DFLPFVCDGCSGIFCLEHRSKDSHGCSEVNV   56 (75)
T ss_dssp             CCCCCSCTTTCCC-SCCCEECTTTCCEECSTTCSSGGGTCCCCSS
T ss_pred             cCCCcCcccCCCc-cceeeECcccCcCcCcccCCccccCCCCCcc
Confidence            4689998  9998 89999999 9999999999999999999986

>2eqe_A Tumor necrosis factor, alpha-induced protein 3; ZF-A20 domain, putative DNA-binding protein A20, zinc finger protein A20, structural genomics; NMR {Homo sapiens}

Probab=97.96  E-value=4.7e-06  Score=53.42  Aligned_cols=31  Identities=35%  Similarity=0.984  Sum_probs=27.1

Q ss_pred             CCcccccc-cCCCCCCcccCCCchhhhhhHHH
Q 031253            3 RNNVTMCI-KGCGFYGSKENKNMCSKCYDDYL   33 (163)
Q Consensus         3 ~~~p~LCa-NgCGFFGS~aT~nmCSKCYrd~~   33 (163)
                      ..+...|. .||-|||+|.+.++|..||.++.
T Consensus        12 ~~gt~kCRk~GC~fFGTpen~GFCTlCf~eyr   43 (48)
T 2eqe_A           12 RTGTSKCRKAGCVYFGTPENKGFCTLCFIEYS   43 (48)
T ss_dssp             SCCSSBCSSTTCCSBCCTTTTTCCHHHHHHHH
T ss_pred             ccccchhhhcCCCcccCcccCceeeeehhhhh
Confidence            34556897 99999999999999999999984

>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1

Probab=92.80  E-value=0.041  Score=37.17  Aligned_cols=27  Identities=44%  Similarity=1.191  Sum_probs=23.9

Q ss_pred             ccccccccccccc--ceeee-cCcccccCc
Q 031253          101 RRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       101 ~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ..|..|+++.+++  -..|| ||.+||+.+
T Consensus        12 ~~C~~C~~~F~~~~RrHHCR~CG~v~C~~C   41 (73)
T 1vfy_A           12 DACMICSKKFSLLNRKHHCRSCGGVFCQEH   41 (73)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGG
T ss_pred             CcccCCCCccCCccccccCCCCCEEEcccc
Confidence            4899999999985  48999 999999985

>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1

Probab=92.07  E-value=0.093  Score=36.89  Aligned_cols=29  Identities=31%  Similarity=0.917  Sum_probs=24.8

Q ss_pred             cccccccccccccccc--eeee-cCcccccCc
Q 031253           99 VKRRCEICNKKVGLIE--FKCR-CGHLYCGTH  127 (163)
Q Consensus        99 ~~~rC~~C~kk~gl~g--f~Cr-Cg~~fC~~H  127 (163)
                      ....|..|+++.+++.  ..|| ||.+||+.+
T Consensus         8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C   39 (88)
T 1wfk_A            8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC   39 (88)
T ss_dssp             CCSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred             cCCCCcCcCCcccCccccccCCCCCCEEChhH
Confidence            3568999999999854  7999 999999974

>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A

Probab=91.69  E-value=0.085  Score=36.35  Aligned_cols=28  Identities=36%  Similarity=1.086  Sum_probs=24.1

Q ss_pred             cccccccccccccc--ceeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ...|..|+++.+++  -..|| ||.+||+.+
T Consensus        19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C   49 (82)
T 2yw8_A           19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTC   49 (82)
T ss_dssp             CCBCTTTCCBCBTTBCCEECTTTCCEECSGG
T ss_pred             CCcccCcCCcccCccccccCCCCCCEEChHH
Confidence            45899999999985  47999 999999973

>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A

Probab=91.46  E-value=0.07  Score=39.75  Aligned_cols=28  Identities=29%  Similarity=0.945  Sum_probs=24.1

Q ss_pred             cccccccccccccc--ceeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ...|..|+++.+++  -..|| ||.+||+.+
T Consensus        69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~C   99 (125)
T 1joc_A           69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC   99 (125)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred             CCCCcCcCCccccccccccCCCCCeEEChHH
Confidence            46899999999985  37999 999999874

>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.08  E-value=0.13  Score=35.58  Aligned_cols=28  Identities=21%  Similarity=0.740  Sum_probs=24.3

Q ss_pred             ccccccccccccccc--eeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLIE--FKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~g--f~Cr-Cg~~fC~~H  127 (163)
                      ...|..|.++.+++.  -.|| ||.+||+..
T Consensus        14 ~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~C   44 (84)
T 1x4u_A           14 FGNCTGCSATFSVLKKRRSCSNCGNSFCSRC   44 (84)
T ss_dssp             CSSCSSSCCCCCSSSCCEECSSSCCEECTTT
T ss_pred             CCcCcCcCCccccchhhhhhcCCCcEEChhh
Confidence            468999999999854  7999 999999974

>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}

Probab=90.90  E-value=0.12  Score=35.78  Aligned_cols=28  Identities=29%  Similarity=0.739  Sum_probs=24.3

Q ss_pred             cccccccccccccc--ceeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ...|..|+++.+++  -..|| ||.+||+.+
T Consensus        21 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~C   51 (84)
T 1z2q_A           21 APACNGCGCVFTTTVRRHHCRNCGYVLCGDC   51 (84)
T ss_dssp             CCBCTTTCCBCCTTSCCEECTTTCCEECTGG
T ss_pred             CCCCcCcCCccccchhcccccCCCcEEChHH
Confidence            56899999999985  48999 999999873

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=90.33  E-value=0.1  Score=41.59  Aligned_cols=28  Identities=32%  Similarity=0.995  Sum_probs=24.3

Q ss_pred             cccccccccccccc--ceeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ...|..|+++.+++  -..|| ||.+||+.+
T Consensus       161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~C  191 (220)
T 1dvp_A          161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQC  191 (220)
T ss_dssp             CSBCTTTCCBCCSSSCCEECTTTCCEECSTT
T ss_pred             CCccCCCCCccCCcccccccCCcCCEEChHH
Confidence            36999999999985  48999 999999974

>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}

Probab=89.96  E-value=0.13  Score=36.18  Aligned_cols=27  Identities=33%  Similarity=0.994  Sum_probs=23.8

Q ss_pred             cccccccccccccc--ceeee-cCcccccC
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGT  126 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~  126 (163)
                      ...|..|+++.+++  -..|| ||.+||+.
T Consensus        20 ~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~   49 (90)
T 3t7l_A           20 APNCMNCQVKFTFTKRRHHCRACGKVFCGV   49 (90)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGG
T ss_pred             CCcCcCCCCcccchhhCccccCCCCEECCc
Confidence            46899999999985  58999 99999987

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=89.68  E-value=0.2  Score=40.42  Aligned_cols=28  Identities=32%  Similarity=1.124  Sum_probs=24.3

Q ss_pred             cccccccccccccc--ceeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ...|..|+++.+++  -..|| ||.+||+.+
T Consensus       164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~C  194 (226)
T 3zyq_A          164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKC  194 (226)
T ss_dssp             CSBCTTTCCBCBTTBCCEECTTTCCEECTTT
T ss_pred             CCCCcCcCCCCCccccccccCCCcCEeChhh
Confidence            46899999999985  58999 999999874

>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1

Probab=88.14  E-value=0.18  Score=37.62  Aligned_cols=41  Identities=17%  Similarity=0.431  Sum_probs=29.1

Q ss_pred             cccccccccccccc--ceeee-cCcccccC---ccCCCCCCCcccch
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGT---HRYPKEHACTFDFK  140 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~---HR~~~~H~C~~dyk  140 (163)
                      ...|..|+++.+++  --.|| ||.+||+.   |+.+..--|..=|.
T Consensus        19 ~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~   65 (120)
T 1y02_A           19 EPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQR   65 (120)
T ss_dssp             -CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHH
T ss_pred             cCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHH
Confidence            36999999998884  47999 99999987   56666666766554

>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding, metal-binding, phosphoprotein, exchange factor, RAC, GTPase, membrane domain; 1.85A {Mus musculus} PDB: 3bji_A 1f5x_A

Probab=85.75  E-value=0.38  Score=40.86  Aligned_cols=40  Identities=15%  Similarity=0.324  Sum_probs=28.2

Q ss_pred             cccccccccccc-cc--cceeee-cCcccccC-ccCCCCCCCcccch
Q 031253           99 VKRRCEICNKKV-GL--IEFKCR-CGHLYCGT-HRYPKEHACTFDFK  140 (163)
Q Consensus        99 ~~~rC~~C~kk~-gl--~gf~Cr-Cg~~fC~~-HR~~~~H~C~~dyk  140 (163)
                      .+..|..|++.+ |+  .|++|| ||.++|.. |..-. . |.-+.-
T Consensus       356 ~~t~C~~C~~~~~g~~~qg~~C~~C~~~~h~~C~~~~~-~-C~~~~~  400 (406)
T 2vrw_B          356 ETTSCKACQMLLRGTFYQGYRCYRCRAPAHKECLGRVP-P-CGRHGQ  400 (406)
T ss_dssp             SCCBCTTTCCBCCSSSSCEEEETTTCCEECGGGGGGSC-C-C-----
T ss_pred             CCCCCccccchhceeCCCCCCCCCCcCccchhhhhhCC-C-CCCCch
Confidence            578999999988 66  799999 99999988 33333 3 977654

>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}

Probab=84.89  E-value=0.31  Score=32.08  Aligned_cols=23  Identities=30%  Similarity=0.863  Sum_probs=19.4

Q ss_pred             cccccccccccccc--cceeee-cCc
Q 031253           99 VKRRCEICNKKVGL--IEFKCR-CGH  121 (163)
Q Consensus        99 ~~~rC~~C~kk~gl--~gf~Cr-Cg~  121 (163)
                      .+..|..|++++++  +|++|+ |+.
T Consensus        18 ~~~~C~~Cg~~i~~gkq~~kC~dC~~   43 (61)
T 4b6d_A           18 KPESCVPCGKRIKFGKLSLKCRDCRV   43 (61)
T ss_dssp             SCEECTTTCCEECTTCEEEEESSSSC
T ss_pred             CCcccccccCEEEEeeEeeECCCCCC
Confidence            46799999999987  789999 754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	163
d1wffa_	85	g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog	1e-22
d1wfha_	64	g.80.1.1 (A:) Zinc finger A20 and AN1 domains cont	3e-19
d1wfla_	74	g.80.1.1 (A:) Zinc finger A20 domain containing pr	5e-19
d1wfpa_	74	g.80.1.1 (A:) Zinc finger A20 and AN1 domains cont	2e-17
d2c7na1	56	g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-b	5e-09

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]} Length = 85

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 83.8 bits (207), Expect = 1e-22
 Identities = 23/61 (37%), Positives = 35/61 (57%), Gaps = 1/61 (1%)

Query: 97  SSVKRRCEICNKKVGLIE-FKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIR 155
             + + C +C KK GL   F+CRCG+ +C +HRY + H C +D+K   R  L + NP+  
Sbjct: 22  KKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSG 81

Query: 156 A 156
            
Sbjct: 82  P 82

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 64

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 74.5 bits (183), Expect = 3e-19
 Identities = 25/47 (53%), Positives = 30/47 (63%)

Query: 98  SVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDR 144
               RC +C K+VGL  F CRCG  +CG+HRYP+ H CTFDFK    
Sbjct: 13  QRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGS 59

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 74

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.2 bits (182), Expect = 5e-19
 Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 4/65 (6%)

Query: 81  NSNAVDSRTIESGAAGSSV----KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACT 136
           +S +    + +S      +    K RC +C KKVGL  F CRCG+L+CG HRY  +H C 
Sbjct: 2   SSGSSGPSSSQSEEKAPELPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCP 61

Query: 137 FDFKK 141
           +D+K 
Sbjct: 62  YDYKA 66

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 74

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 70.3 bits (172), Expect = 2e-17
 Identities = 27/45 (60%), Positives = 30/45 (66%)

Query: 100 KRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDR 144
             RC  CNKKVG+  FKCRCG  +CGTHRYP+ H C FDFK    
Sbjct: 25  ATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAS 69

>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: A20-like zinc finger
domain: RabGEF1 (Rabex-5), ubiquitin-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (113), Expect = 5e-09
 Identities = 11/29 (37%), Positives = 17/29 (58%)

Query: 8  MCIKGCGFYGSKENKNMCSKCYDDYLKAE 36
          +C KGCG+YG+   +  CSKC+ +     
Sbjct: 1  LCKKGCGYYGNPAWQGFCSKCWREEYHKA 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	163
d1wffa_	85	ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus	99.94
d1wfha_	64	Zinc finger A20 and AN1 domains containing protein	99.92
d1wfla_	74	Zinc finger A20 domain containing protein 2 {Mouse	99.91
d1wfpa_	74	Zinc finger A20 and AN1 domains containing protein	99.9
d2c7na1	56	RabGEF1 (Rabex-5), ubiquitin-binding domain {Human	99.76
d1wfea_	86	AN1-type zinc finger protein 1 {Mouse (Mus musculu	98.18
d1wfka_	88	Zinc finger FYVE domain containing protein 19 {Mou	94.87
d1vfya_	67	vps27p protein {Baker's yeast (Saccharomyces cerev	93.23
d1dvpa2	72	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	92.3
d1joca1	64	Eea1 {Human (Homo sapiens) [TaxId: 9606]}	91.94
d1zbdb_	124	Effector domain of rabphilin-3a {Rat (Rattus norve	91.32
d1y02a2	51	Rififylin (FYVE-RING finger protein Sakura) {Human	89.75
d1tbna_	66	Protein kinase c-gamma {Rat (Rattus rattus) [TaxId	82.38
d1r79a_	84	Diacylglycerol kinase delta {Human (Homo sapiens)	81.16

>d1wffa_ g.80.1.1 (A:) ANUBL1 (AN1, ubiquitin-like, homolog) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: ANUBL1 (AN1, ubiquitin-like, homolog)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=3e-29  Score=179.04  Aligned_cols=62  Identities=37%  Similarity=0.945  Sum_probs=57.9

Q ss_pred             CCccccccccccccccc-cceeeecCcccccCccCCCCCCCcccchHhhHHHHHHhCCccccc
Q 031253           96 GSSVKRRCEICNKKVGL-IEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREMLVKDNPLIRAD  157 (163)
Q Consensus        96 ~~~~~~rC~~C~kk~gl-~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l~k~np~v~~~  157 (163)
                      .+..++||+.|+|||+| ++|+||||++||+.|||||.|+|+||||+.||++|+++||+|.+.
T Consensus        21 kk~~~~RC~~C~KKl~l~~~~~CrCg~~FC~~HR~pe~H~CtfDyK~~~k~~L~k~NP~i~p~   83 (85)
T d1wffa_          21 KKKIMKHCFLCGKKTGLATSFECRCGNNFCASHRYAEAHGCNYDYKSAGRRYLEEANPVSGPS   83 (85)
T ss_dssp             CCCCCCBCSSSCCBCSSSSCEECTTCCEECTTTCSTGGGTCCSCCSSSCCCCCCCCCCCCCTT
T ss_pred             ccccCCcChhcCCeecCCcCeecCCCCEehhhcCCCcCcCCCcchHHHHHHHHHHHCCccCCC
Confidence            44567899999999999 589999999999999999999999999999999999999999874

>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At2g36320
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=1.7e-26  Score=156.87  Aligned_cols=52  Identities=48%  Similarity=1.085  Sum_probs=48.1

Q ss_pred             CCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhHHHH
Q 031253           96 GSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDREML  147 (163)
Q Consensus        96 ~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r~~l  147 (163)
                      ++..++||+.|+|||||++|+||||++||+.|||||.|+|+||||++||..|
T Consensus        11 ~~~k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfDyK~~Gr~~~   62 (64)
T d1wfha_          11 PPQRPNRCTVCRKRVGLTGFMCRCGTTFCGSHRYPEVHGCTFDFKSAGSGPS   62 (64)
T ss_dssp             CCSSCCCCTTTCCCCCTTCEECSSSCEECTTTCSTTTTTCCCCCSCCCCSCC
T ss_pred             CCCCCCcChhhCCCccceeeeccCCCEehhhcCCCcCcCCCCcchhccCCCC
Confidence            3467899999999999999999999999999999999999999999998643

>d1wfla_ g.80.1.1 (A:) Zinc finger A20 domain containing protein 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 domain containing protein 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=9.3e-26  Score=157.08  Aligned_cols=50  Identities=48%  Similarity=1.100  Sum_probs=46.0

Q ss_pred             CCCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhH
Q 031253           95 AGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDR  144 (163)
Q Consensus        95 ~~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r  144 (163)
                      +++..++||+.|+|||||++|+||||.+||+.|||||.|+|+||||++|.
T Consensus        20 ~~k~k~~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~CtfDyK~~g~   69 (74)
T d1wfla_          20 LPKPKKNRCFMCRKKVGLTGFDCRCGNLFCGLHRYSDKHNCPYDYKAEAS   69 (74)
T ss_dssp             CCCSCTTBCSSSCCBCGGGCEECTTSCEECSSSCSTTTTTCCCCGGGTSS
T ss_pred             CCCCCCCcChhhCCcccceeeEccCCCEehhhcCCCcCcCCCCccccccc
Confidence            33456899999999999999999999999999999999999999998874

>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At1g12440 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: Zinc finger A20 and AN1 domains containing protein At1g12440
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.90  E-value=4.6e-25  Score=153.62  Aligned_cols=51  Identities=55%  Similarity=1.161  Sum_probs=47.6

Q ss_pred             CCCCccccccccccccccccceeeecCcccccCccCCCCCCCcccchHhhH
Q 031253           94 AAGSSVKRRCEICNKKVGLIEFKCRCGHLYCGTHRYPKEHACTFDFKKFDR  144 (163)
Q Consensus        94 ~~~~~~~~rC~~C~kk~gl~gf~CrCg~~fC~~HR~~~~H~C~~dyk~~~r  144 (163)
                      .+++..++||+.|+|||+|++|.||||++||+.|||||.|+|+||||+.||
T Consensus        19 ~~~k~kk~RC~~C~KKl~l~~~~CrCg~~FC~~HR~pe~H~C~fDyK~~gr   69 (74)
T d1wfpa_          19 DPPKSTATRCLSCNKKVGVTGFKCRCGSTFCGTHRYPESHECQFDFKGVAS   69 (74)
T ss_dssp             CCTTCCCCBCSSSCCBCTTTCEECTTSCEECTTTCSTTTSCCCSCTTSCCC
T ss_pred             CCCCCCCCcChhcCCccCCCceecCCCChhhhccCCccCcCCCCcchhccc
Confidence            344567899999999999999999999999999999999999999999988

>d2c7na1 g.39.1.15 (A:18-73) RabGEF1 (Rabex-5), ubiquitin-binding domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: A20-like zinc finger
domain: RabGEF1 (Rabex-5), ubiquitin-binding domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=1.3e-19  Score=119.45  Aligned_cols=33  Identities=33%  Similarity=0.900  Sum_probs=30.2

Q ss_pred             ccccCCCCCCcccCCCchhhhhhHHHHHHHHhh
Q 031253            8 MCIKGCGFYGSKENKNMCSKCYDDYLKAELIAK   40 (163)
Q Consensus         8 LCaNgCGFFGS~aT~nmCSKCYrd~~~~~~~~~   40 (163)
                      ||+|||||||||+|+|||||||||++.++++..
T Consensus         1 lC~~gCGFyG~~~~~g~CSkCyr~~~~k~~q~~   33 (56)
T d2c7na1           1 LCKKGCGYYGNPAWQGFCSKCWREEYHKARQKQ   33 (56)
T ss_dssp             CCTTCSSSCCCGGGTTCCHHHHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCcccCCcchHHHHHHHHHHHHHH
Confidence            899999999999999999999999998777643

>d1wfea_ g.80.1.1 (A:) AN1-type zinc finger protein 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: AN1-like Zinc finger
superfamily: AN1-like Zinc finger
family: AN1-like Zinc finger
domain: AN1-type zinc finger protein 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=2.6e-07  Score=64.62  Aligned_cols=39  Identities=28%  Similarity=0.726  Sum_probs=34.2

Q ss_pred             cccccccc--ccccccccceeee-cCcccccCccCCCCCCCcc
Q 031253           98 SVKRRCEI--CNKKVGLIEFKCR-CGHLYCGTHRYPKEHACTF  137 (163)
Q Consensus        98 ~~~~rC~~--C~kk~gl~gf~Cr-Cg~~fC~~HR~~~~H~C~~  137 (163)
                      ....+|..  |++ +.++.|.|. |+..||..||+++.|.|.-
T Consensus        23 ~~~~~Cs~~~C~~-~~~lp~~C~~C~~~FC~~Hr~~e~H~C~~   64 (86)
T d1wfea_          23 HKSYSCSFKGCTD-VELVAVICPYCEKNFCLRHRHQSDHDCEK   64 (86)
T ss_dssp             SCCEECCSTTCCC-EESSCEECTTTCCEECGGGCSTGGGTCSS
T ss_pred             CccCcCCCCCCCC-cccCcccchhhCcchhhccCCccCCCCCC
Confidence            45678997  985 689999997 9999999999999999963

>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Zinc finger FYVE domain containing protein 19
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.87  E-value=0.0074  Score=41.07  Aligned_cols=29  Identities=34%  Similarity=0.944  Sum_probs=25.4

Q ss_pred             ccccccccccccccc--ceeee-cCcccccCc
Q 031253           99 VKRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus        99 ~~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      ..++|..|+++.+++  -..|| ||.+||..+
T Consensus         8 ~~s~C~~C~~~Fs~~~rrhhCr~CG~vfC~~C   39 (88)
T d1wfka_           8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGC   39 (88)
T ss_dssp             CCSBCTTTCCBCCSSSCEEECSSSCCEEETTT
T ss_pred             ccCcCcccCchhccccccccccccChhhChHH
Confidence            468999999999985  58999 999999875

>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: vps27p protein
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.23  E-value=0.018  Score=36.97  Aligned_cols=27  Identities=44%  Similarity=1.191  Sum_probs=23.5

Q ss_pred             ccccccccccccc--ceeee-cCcccccCc
Q 031253          101 RRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       101 ~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      +.|..|+++.+|+  -..|| ||.+||+.+
T Consensus         6 ~~C~~C~~~F~~~~rkhhCr~CG~~fC~~C   35 (67)
T d1vfya_           6 DACMICSKKFSLLNRKHHCRSCGGVFCQEH   35 (67)
T ss_dssp             SBCTTTCCBCBTTBCCEECTTTCCEECGGG
T ss_pred             cccccCCCcccCcccccccccCCCEecccc
Confidence            4699999999994  48999 999999886

>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=92.30  E-value=0.045  Score=35.53  Aligned_cols=28  Identities=32%  Similarity=1.006  Sum_probs=24.5

Q ss_pred             ccccccccccccc--ceeee-cCcccccCcc
Q 031253          101 RRCEICNKKVGLI--EFKCR-CGHLYCGTHR  128 (163)
Q Consensus       101 ~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~HR  128 (163)
                      +.|..|+++.+++  -..|| ||.+||+.+-
T Consensus        14 ~~C~~C~~~F~~~~rrhhCr~CG~~~C~~C~   44 (72)
T d1dvpa2          14 RVCHRCRVEFTFTNRKHHCRNCGQVFCGQCT   44 (72)
T ss_dssp             SBCTTTCCBCCSSSCCEECTTTCCEECSTTS
T ss_pred             CccccCCCcccCccccccccccCCeeChhhh
Confidence            5699999999995  58999 9999998874

>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Eea1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.94  E-value=0.034  Score=35.28  Aligned_cols=28  Identities=29%  Similarity=0.945  Sum_probs=24.2

Q ss_pred             cccccccccccccc--ceeee-cCcccccCc
Q 031253          100 KRRCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       100 ~~rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      .+.|..|+++.+++  -..|| ||.+||+..
T Consensus         8 ~~~C~~C~~~F~~~~rrHHCR~CG~v~C~~C   38 (64)
T d1joca1           8 VQNCMACGKGFSVTVRRHHCRQCGNIFCAEC   38 (64)
T ss_dssp             CCBCTTTCCBCCSSSCCEECTTTCCEECGGG
T ss_pred             CCcCcCcCCcccCCccccchhhhCCeecccc
Confidence            45799999999995  47899 999999875

>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Effector domain of rabphilin-3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=91.32  E-value=0.045  Score=38.63  Aligned_cols=29  Identities=24%  Similarity=0.726  Sum_probs=24.5

Q ss_pred             cccccccccccccc---cceeee-cCcccccCc
Q 031253           99 VKRRCEICNKKVGL---IEFKCR-CGHLYCGTH  127 (163)
Q Consensus        99 ~~~rC~~C~kk~gl---~gf~Cr-Cg~~fC~~H  127 (163)
                      ..+.|..|++.+++   .+..|| ||.+||+.=
T Consensus        47 ~~~~C~~C~~~f~~~~~~~~~C~~C~~~~C~~C   79 (124)
T d1zbdb_          47 GVNRCILCGEQLGMLGSASVVCEDCKKNVCTKC   79 (124)
T ss_dssp             SSSBCSSSCCBCSTTSCCEEECTTTCCEEETTS
T ss_pred             CCCcCcccCCcccCCCCCCCcCccCCcccccCC
Confidence            45789999999986   357899 999999984

>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: FYVE, a phosphatidylinositol-3-phosphate binding domain
domain: Rififylin (FYVE-RING finger protein Sakura)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.75  E-value=0.056  Score=33.06  Aligned_cols=26  Identities=23%  Similarity=0.643  Sum_probs=22.4

Q ss_pred             cccccccccccc--ceeee-cCcccccCc
Q 031253          102 RCEICNKKVGLI--EFKCR-CGHLYCGTH  127 (163)
Q Consensus       102 rC~~C~kk~gl~--gf~Cr-Cg~~fC~~H  127 (163)
                      -|..|+++.+++  -..|| ||.+||+..
T Consensus         2 ~C~~C~~~F~~~~rkhhCr~CG~~fC~~C   30 (51)
T d1y02a2           2 SCKSCGAHFANTARKQTCLDCKKNFCMTC   30 (51)
T ss_dssp             CCTTTCCCCSSGGGCEECTTTCCEECGGG
T ss_pred             CccccCCcccCCccCcccccCCcccCccc
Confidence            488999999984  48999 999999885

>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus) [TaxId: 10117]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Protein kinase c-gamma
species: Rat (Rattus rattus) [TaxId: 10117]

Probab=82.38  E-value=0.56  Score=29.14  Aligned_cols=42  Identities=19%  Similarity=0.333  Sum_probs=28.9

Q ss_pred             ccccccccccccc-c--cceeee-cCcccccCccCCCCCCCcccch
Q 031253           99 VKRRCEICNKKVG-L--IEFKCR-CGHLYCGTHRYPKEHACTFDFK  140 (163)
Q Consensus        99 ~~~rC~~C~kk~g-l--~gf~Cr-Cg~~fC~~HR~~~~H~C~~dyk  140 (163)
                      .+..|..|++.|- +  .||+|+ |+.+.=......=...|..++.
T Consensus        18 ~~~~C~~C~~~i~g~~~~g~~C~~C~~~~H~~C~~~v~~~C~~~~~   63 (66)
T d1tbna_          18 SPTFCDHCGSLLYGLVHQGMKCSCCEMNVHRRCVRSVPSLCGVDHT   63 (66)
T ss_dssp             SCCBCSSSCCBCCTTSSSCEEETTTCCEECTTTTTTSCCCSSCCCC
T ss_pred             CCcCCcCCCCcccCcccCccccCcccCeEChHHhccccccCCCCcc
Confidence            4568999999884 4  689999 8877655544333446766553

>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Cysteine-rich domain
superfamily: Cysteine-rich domain
family: Protein kinase cysteine-rich domain (cys2, phorbol-binding domain)
domain: Diacylglycerol kinase delta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.16  E-value=0.32  Score=32.00  Aligned_cols=24  Identities=33%  Similarity=1.061  Sum_probs=19.4

Q ss_pred             ccccccccccccc----ccceeee-cCcc
Q 031253           99 VKRRCEICNKKVG----LIEFKCR-CGHL  122 (163)
Q Consensus        99 ~~~rC~~C~kk~g----l~gf~Cr-Cg~~  122 (163)
                      .+.+|..|++.++    ++||+|+ |+.+
T Consensus        37 ~~~~C~~C~~~i~~~~~~qg~~C~~C~~~   65 (84)
T d1r79a_          37 VSAKCTVCDKTCGSVLRLQDWRCLWCKAM   65 (84)
T ss_dssp             TTCBCSSSCCBCCCTTTCCCEEESSSCCE
T ss_pred             CCCCCcccCcccCCccccCcEecCcCCch
Confidence            4679999999983    4789999 7654