Citrus Sinensis ID: 031322

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-
Protein Sequence
MLNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGVEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHcccccccccHHEEccccccccccccccccccccccEEEccccccEEEEEcccEEEEcccccccccccccccccccccccccccEEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHccccccccEEEEEccccccHHHHHHHHccccHHHHEEEccccccEEEEEcccEEEccccccEEHHcHHHHccccccccccccEEEEEccccccccEEccccc
Coil and Loop (DISEMBL)
MLNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVgklngdfgssmkcgveESFIELGRVWQAPMYEITLNFnqcsvidqfreprvlplfnnlvanetgddveaEILDrtyilprescffmsdlgqihnlipadsdcgfnlividppwengsarqksvy
Flexible Loop (DISEMBL)
mlnerelaadqrhQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGVEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVanetgddveAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPpwengsarqksvy
Low Complexity Region (SEG)
MLNERELAADQRHQEVKPllliaheallaaidllNFVGKLNGDFGSSMKCGVEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY
Disordered region (IsUnstruct)
***************VKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGVEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW***********
Disordered Region (DISOPRED)
*LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVG****************SFIELGRVWQAPMYEITLN***********EPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG********
Disordered Region (DISEMBL)
***********RHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGVEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN*********
Disordered Region (DISPRO)
MLNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNG*********VEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSAR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGVEESFIELGRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	161	2.2.26 [Sep-21-2011]
Q8LFA9	414	Methyltransferase-like pr	yes	no	0.968	0.376	0.536	1e-38
Q3U034	471	Methyltransferase-like pr	yes	no	0.919	0.314	0.264	1e-05
Q8N3J2	472	Methyltransferase-like pr	yes	no	0.428	0.146	0.323	7e-05

>sp|Q8LFA9|METL2_ARATH Methyltransferase-like protein 2 OS=Arabidopsis thaliana GN=At1g19340 PE=2 SV=2

 Score =  158 bits (400), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 107/164 (65%), Gaps = 8/164 (4%)

Query: 6   ELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMK------CGVEESFIEL 59
           E A++ RHQE +  L  AHE+ L  I+LL+    L+ D            C  E SFIEL
Sbjct: 84  EQASNLRHQEARLFLSKAHESFLKEIELLSLTKGLSDDNDDDDSSLLNKCCDDEVSFIEL 143

Query: 60  GRVWQAPMYEITLNFN-QC-SVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPR 117
           G VWQAP YEITL+FN  C +  +   E RV  +FNNLV NE G++VEAE  +R YI+PR
Sbjct: 144 GGVWQAPFYEITLSFNLHCDNEGESCNEQRVFQVFNNLVVNEIGEEVEAEFSNRRYIMPR 203

Query: 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
            SCF+MSDL  I NL+PA S+ G+NLIVIDPPWEN SA QKS Y
Sbjct: 204 NSCFYMSDLHHIRNLVPAKSEEGYNLIVIDPPWENASAHQKSKY 247

Probable methyltransferase.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

>sp|Q3U034|METL4_MOUSE Methyltransferase-like protein 4 OS=Mus musculus GN=Mettl4 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 81/174 (46%), Gaps = 26/174 (14%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEAL----LAAIDLLNFVGKLNGDFGSSM----KCGVE 53
            N+ EL A + H +++ L+L     L    L +  L   V K +G  G        C + 
Sbjct: 139 FNQGELDAMEYHTKIRELILDGSSKLIQEGLRSGFLYPLVEKQDGSSGCITLPLDACNLS 198

Query: 54  ESFIELGR----VWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEIL 109
           E   E+ +    + +  +  + L  +  SVI+       L L + ++ N +       ++
Sbjct: 199 E-LCEMAKHLPSLNEMELQTLQLMGDDVSVIE-------LDLSSQIIENNSSFSKMITLM 250

Query: 110 DRTYILPRESCFFMSDLGQIHNLIPADSDCG--FNLIVIDPPWENGSARQKSVY 161
            + Y+LP +S F +SD+  +  L+    +CG  F+ IVIDPPWEN S ++ + Y
Sbjct: 251 GQKYLLPPQSSFLLSDISCMQPLL----NCGKTFDAIVIDPPWENKSVKRSNRY 300

Probable methyltransferase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8N3J2|METL4_HUMAN Methyltransferase-like protein 4 OS=Homo sapiens GN=METTL4 PE=2 SV=3

 Score = 46.6 bits (109), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/71 (32%), Positives = 41/71 (57%), Gaps = 2/71 (2%)

Query: 91  LFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150
           LF  +V N +       ++ + Y+LP +S F +SD+  +  L+  +    F++IVIDPPW
Sbjct: 233 LFLRVVENNSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLL--NYRKTFDVIVIDPPW 290

Query: 151 ENGSARQKSVY 161
           +N S ++ + Y
Sbjct: 291 QNKSVKRSNRY 301

Probable methyltransferase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
359492662	447	PREDICTED: methyltransferase-like protei	0.993	0.357	0.601	1e-52
302142445	425	unnamed protein product [Vitis vinifera]	0.993	0.376	0.601	2e-52
255538560	386	S-adenosylmethionine-dependent methyltra	0.993	0.414	0.601	2e-48
224137230	408	predicted protein [Populus trichocarpa]	0.950	0.375	0.580	4e-43
449470007	420	PREDICTED: LOW QUALITY PROTEIN: methyltr	0.987	0.378	0.607	2e-42
356552138	428	PREDICTED: methyltransferase-like protei	0.981	0.369	0.556	1e-41
255644817	273	unknown [Glycine max]	0.981	0.578	0.547	2e-40
297844896	410	hypothetical protein ARALYDRAFT_472157 [	0.968	0.380	0.556	3e-40
18394726	414	methyltransferase MT-A70-like protein [A	0.968	0.376	0.536	6e-37
21537172	414	unknown [Arabidopsis thaliana]	0.968	0.376	0.536	6e-37

>gi|359492662|ref|XP_002281794.2| PREDICTED: methyltransferase-like protein 2-like [Vitis vinifera]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 130/173 (75%), Gaps = 13/173 (7%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCG-----VEESF 56
           LNERE +AD+RHQE +PLLL AHE+LL A DLL+ +  L  D  S  +       VE+SF
Sbjct: 104 LNERERSADERHQEARPLLLKAHESLLEATDLLSVICNLRNDVCSLTESEESLPIVEQSF 163

Query: 57  IELGRVWQAPMYEITLNFNQ--------CSVIDQFREPRVLPLFNNLVANETGDDVEAEI 108
           +ELGRVWQAP+YEI L+F+Q         S + +++E RV+P+FNNLV NET D+VEAE 
Sbjct: 164 VELGRVWQAPLYEIILHFHQHCNPSGDGSSPLIRYKEERVIPIFNNLVVNETSDNVEAEF 223

Query: 109 LDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           L+  Y++PRESCF+MSDL QIHNLIPA+SDCGF+LIV+DPPWEN SA QK VY
Sbjct: 224 LNSRYVIPRESCFYMSDLRQIHNLIPAESDCGFSLIVVDPPWENKSASQKLVY 276

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142445|emb|CBI19648.3| unnamed protein product [Vitis vinifera]

 Score =  210 bits (534), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 104/173 (60%), Positives = 130/173 (75%), Gaps = 13/173 (7%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCG-----VEESF 56
           LNERE +AD+RHQE +PLLL AHE+LL A DLL+ +  L  D  S  +       VE+SF
Sbjct: 82  LNERERSADERHQEARPLLLKAHESLLEATDLLSVICNLRNDVCSLTESEESLPIVEQSF 141

Query: 57  IELGRVWQAPMYEITLNFNQ--------CSVIDQFREPRVLPLFNNLVANETGDDVEAEI 108
           +ELGRVWQAP+YEI L+F+Q         S + +++E RV+P+FNNLV NET D+VEAE 
Sbjct: 142 VELGRVWQAPLYEIILHFHQHCNPSGDGSSPLIRYKEERVIPIFNNLVVNETSDNVEAEF 201

Query: 109 LDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           L+  Y++PRESCF+MSDL QIHNLIPA+SDCGF+LIV+DPPWEN SA QK VY
Sbjct: 202 LNSRYVIPRESCFYMSDLRQIHNLIPAESDCGFSLIVVDPPWENKSASQKLVY 254

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255538560|ref|XP_002510345.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis] gi|223551046|gb|EEF52532.1| S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 101/168 (60%), Positives = 122/168 (72%), Gaps = 8/168 (4%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGV-----EESF 56
           LNERE AAD+RHQ+ +P+L  A E L+   DLL+ +  L  D  SS    +     E SF
Sbjct: 78  LNEREQAADKRHQQARPMLSKALECLMETTDLLSIMRDLRSDICSSELTKLTLPHDELSF 137

Query: 57  IELGRVWQAPMYEITLNFNQC---SVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTY 113
           +ELGRVWQAP+Y+ITLNF +    S IDQ R+   LP+FNNLV NET DD+EAE L+R Y
Sbjct: 138 VELGRVWQAPLYDITLNFPRSVKDSAIDQCRDQSNLPVFNNLVVNETCDDLEAEFLNRKY 197

Query: 114 ILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           ILPRESCF+MSDLG I NLIPA+S CGFNLI++DPPWEN SA QK +Y
Sbjct: 198 ILPRESCFYMSDLGLIRNLIPAESGCGFNLILVDPPWENASASQKLLY 245

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137230|ref|XP_002327074.1| predicted protein [Populus trichocarpa] gi|222835389|gb|EEE73824.1| predicted protein [Populus trichocarpa]

 Score =  179 bits (454), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 94/162 (58%), Positives = 114/162 (70%), Gaps = 9/162 (5%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNG--DFGSSMKCGVEESFIEL 59
           LNERE AA  RHQ+ +P+LL AH  L+ A DLL  +  L G  +  SS +   + SFIEL
Sbjct: 79  LNEREQAATLRHQQARPMLLKAHGFLMEATDLLAIMKDLRGGSNICSSTELSEQHSFIEL 138

Query: 60  GRVWQAPMYEITLNFNQCSVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRES 119
           G+VWQAP+YEI L      +       RV+P+FNNLV NET DD+EAE L+  +ILPRES
Sbjct: 139 GKVWQAPLYEIILKGASKGL------ERVVPVFNNLVVNETSDDMEAEFLNNKFILPRES 192

Query: 120 CFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           CF+MSDLGQ+HNLI  + + GFNLIVIDPPWENGSARQK  Y
Sbjct: 193 CFYMSDLGQVHNLI-HECNVGFNLIVIDPPWENGSARQKLSY 233

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449470007|ref|XP_004152710.1| PREDICTED: LOW QUALITY PROTEIN: methyltransferase-like protein 2-like [Cucumis sativus]

 Score =  177 bits (448), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 102/168 (60%), Positives = 122/168 (72%), Gaps = 9/168 (5%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMKCGV---EESFIE 58
           LNE+E AADQRHQ  KPLLL A+E LL A DLL+    LN + GSS    +    +  IE
Sbjct: 84  LNEKECAADQRHQVAKPLLLKAYELLLQATDLLSVTRSLNRESGSSEGRNLPSDHQLLIE 143

Query: 59  LGRVWQAPMYEITLNF---NQCSVI--DQFREPRVLPLFNNLVANETGDDVEAEILDRTY 113
            GR+WQAP+YEITL     +Q S +    F++ RV+PLFNNLV NET D+VEAE LD  Y
Sbjct: 144 HGRIWQAPLYEITLKLPEHDQSSEVGGSSFKD-RVVPLFNNLVVNETSDEVEAEFLDHQY 202

Query: 114 ILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           ILPRESCF+MSDL Q+HNLIPA +  GF+LI+IDPPWENGSA+QKS Y
Sbjct: 203 ILPRESCFYMSDLRQVHNLIPAKASSGFSLILIDPPWENGSAQQKSKY 250

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552138|ref|XP_003544427.1| PREDICTED: methyltransferase-like protein 2-like [Glycine max]

 Score =  174 bits (441), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 98/176 (55%), Positives = 117/176 (66%), Gaps = 18/176 (10%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMK-C--GVEESFIE 58
           LNEREL A QRHQE +PLLL AHE LL + +LLN +  L  +   S K C  G + SF++
Sbjct: 85  LNERELIALQRHQEARPLLLAAHECLLKSTELLNVLKTLKSESRCSKKECEGGQQHSFVD 144

Query: 59  LGRVWQAPMYEITLNFN-------------QCSVIDQFREPRVLPLFNNLVANETGDDVE 105
           LGR   +P  E+TL+               + S+  Q  E +VLP FNNLVAN+T DD  
Sbjct: 145 LGR--GSPQLEVTLSLRVSDADTHLPPNELEDSLSVQCCEQKVLPAFNNLVANDTKDDAV 202

Query: 106 AEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           AEILD  YI+PRESCF+MSDLGQI NLIPA +D GFNLIV+DPPWEN SA QKS Y
Sbjct: 203 AEILDNCYIVPRESCFYMSDLGQIRNLIPAHADSGFNLIVVDPPWENASAHQKSRY 258

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255644817|gb|ACU22910.1| unknown [Glycine max]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 98/179 (54%), Positives = 117/179 (65%), Gaps = 21/179 (11%)

Query: 2   LNERELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMK-C--GVEESFIE 58
           LNEREL A QRHQE +PLLL AHE LL + +LLN +  L  +   S K C  G + SF++
Sbjct: 85  LNERELIALQRHQEARPLLLAAHECLLKSTELLNVLKTLKSESRCSKKECEGGQQHSFVD 144

Query: 59  LGRVWQAPMYEITLNFN-------------QCSVIDQFREPRVLPLFNNLVANETGDDVE 105
           LGR   +P  E+TL+               + S+  Q  E +VLP FNNLVAN+T DD  
Sbjct: 145 LGR--GSPQLEVTLSLRVSDADTHLPPNELEDSLSVQCCEQKVLPAFNNLVANDTKDDAV 202

Query: 106 AEILDRTYILPRESCFFM---SDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           AEILD  YI+PRESCF+M   SDLGQI NLIPA +D GFNLIV+DPPWEN SA QKS Y
Sbjct: 203 AEILDNCYIVPRESCFYMMWKSDLGQIRNLIPAHADSGFNLIVVDPPWENASAHQKSRY 261

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297844896|ref|XP_002890329.1| hypothetical protein ARALYDRAFT_472157 [Arabidopsis lyrata subsp. lyrata] gi|297336171|gb|EFH66588.1| hypothetical protein ARALYDRAFT_472157 [Arabidopsis lyrata subsp. lyrata]

 Score =  169 bits (428), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 89/160 (55%), Positives = 109/160 (68%), Gaps = 4/160 (2%)

Query: 6   ELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMK--CGVEESFIELGRVW 63
           E A++ RHQE +  L  AHE+ L  ++L+N    L+ D  S +   C  E SFIELG VW
Sbjct: 84  EQASNLRHQEARLFLSKAHESFLKDVELVNLTKGLSDDDSSLLNKCCDDELSFIELGGVW 143

Query: 64  QAPMYEITLNFNQC--SVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPRESCF 121
           QAP YEITLNFN C  +  +   E RV  +FNNLV NETG++V AE  +R YI+PR+SCF
Sbjct: 144 QAPFYEITLNFNLCCDNEGETCNEQRVFQVFNNLVVNETGEEVGAEFSNRRYIMPRKSCF 203

Query: 122 FMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
           +MSDL  I NL+P  S+ GFNLIVIDPPWEN SA QKS Y
Sbjct: 204 YMSDLLHIRNLVPGKSEEGFNLIVIDPPWENASAHQKSKY 243

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394726|ref|NP_564080.1| methyltransferase MT-A70-like protein [Arabidopsis thaliana] gi|332278193|sp|Q8LFA9.2|METL2_ARATH RecName: Full=Methyltransferase-like protein 2 gi|332191712|gb|AEE29833.1| methyltransferase MT-A70-like protein [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 107/164 (65%), Gaps = 8/164 (4%)

Query: 6   ELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMK------CGVEESFIEL 59
           E A++ RHQE +  L  AHE+ L  I+LL+    L+ D            C  E SFIEL
Sbjct: 84  EQASNLRHQEARLFLSKAHESFLKEIELLSLTKGLSDDNDDDDSSLLNKCCDDEVSFIEL 143

Query: 60  GRVWQAPMYEITLNFN-QC-SVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPR 117
           G VWQAP YEITL+FN  C +  +   E RV  +FNNLV NE G++VEAE  +R YI+PR
Sbjct: 144 GGVWQAPFYEITLSFNLHCDNEGESCNEQRVFQVFNNLVVNEIGEEVEAEFSNRRYIMPR 203

Query: 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
            SCF+MSDL  I NL+PA S+ G+NLIVIDPPWEN SA QKS Y
Sbjct: 204 NSCFYMSDLHHIRNLVPAKSEEGYNLIVIDPPWENASAHQKSKY 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21537172|gb|AAM61513.1| unknown [Arabidopsis thaliana]

 Score =  158 bits (400), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 88/164 (53%), Positives = 107/164 (65%), Gaps = 8/164 (4%)

Query: 6   ELAADQRHQEVKPLLLIAHEALLAAIDLLNFVGKLNGDFGSSMK------CGVEESFIEL 59
           E A++ RHQE +  L  AHE+ L  I+LL+    L+ D            C  E SFIEL
Sbjct: 84  EQASNLRHQEARLFLSKAHESFLKEIELLSLTKGLSDDNDDDDSSLLNKCCDDEVSFIEL 143

Query: 60  GRVWQAPMYEITLNFN-QC-SVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPR 117
           G VWQAP YEITL+FN  C +  +   E RV  +FNNLV NE G++VEAE  +R YI+PR
Sbjct: 144 GGVWQAPFYEITLSFNLHCDNEGESCNEQRVFQVFNNLVVNEIGEEVEAEFSNRRYIMPR 203

Query: 118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
            SCF+MSDL  I NL+PA S+ G+NLIVIDPPWEN SA QKS Y
Sbjct: 204 NSCFYMSDLHHIRNLVPAKSEEGYNLIVIDPPWENASAHQKSKY 247

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	161
TAIR|locus:2016462	414	AT1G19340 [Arabidopsis thalian	0.968	0.376	0.512	3.6e-34
UNIPROTKB|E2RJ27	455	METTL4 "Uncharacterized protei	0.428	0.151	0.309	9.2e-09
UNIPROTKB|E2RJ25	471	METTL4 "Uncharacterized protei	0.428	0.146	0.309	8.6e-08
UNIPROTKB|J3KNJ7	419	METTL4 "Methyltransferase-like	0.428	0.164	0.323	1.1e-06
UNIPROTKB|Q8N3J2	472	METTL4 "Methyltransferase-like	0.428	0.146	0.323	1.6e-06
UNIPROTKB|E1BLJ0	470	METTL4 "Uncharacterized protei	0.428	0.146	0.323	2.8e-06
MGI|MGI:1924031	471	Mettl4 "methyltransferase like	0.428	0.146	0.333	3.5e-06
RGD|1306451	450	Mettl4 "methyltransferase like	0.440	0.157	0.315	5.4e-06

TAIR|locus:2016462 AT1G19340 [Arabidopsis thaliana (taxid:3702)]

 Score = 371 (135.7 bits), Expect = 3.6e-34, P = 3.6e-34
 Identities = 84/164 (51%), Positives = 102/164 (62%)

Query:     6 ELAADQRHQEVKPXXXXXXXXXXXXXXXXNFVGKL---NGDFGSSM--KCGVEE-SFIEL 59
             E A++ RHQE +                 +    L   N D  SS+  KC  +E SFIEL
Sbjct:    84 EQASNLRHQEARLFLSKAHESFLKEIELLSLTKGLSDDNDDDDSSLLNKCCDDEVSFIEL 143

Query:    60 GRVWQAPMYEITLNFN-QC-SVIDQFREPRVLPLFNNLVANETGDDVEAEILDRTYILPR 117
             G VWQAP YEITL+FN  C +  +   E RV  +FNNLV NE G++VEAE  +R YI+PR
Sbjct:   144 GGVWQAPFYEITLSFNLHCDNEGESCNEQRVFQVFNNLVVNEIGEEVEAEFSNRRYIMPR 203

Query:   118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY 161
              SCF+MSDL  I NL+PA S+ G+NLIVIDPPWEN SA QKS Y
Sbjct:   204 NSCFYMSDLHHIRNLVPAKSEEGYNLIVIDPPWENASAHQKSKY 247

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0008757 "S-adenosylmethionine-dependent methyltransferase activity" evidence=ISS

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|E2RJ27 METTL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 115 (45.5 bits), Expect = 9.2e-09, Sum P(2) = 9.2e-09
 Identities = 22/71 (30%), Positives = 42/71 (59%)

Query:    91 LFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150
             LF+ +V N +       ++ + Y++P +S F +SD+  +H L+       +++IVIDPPW
Sbjct:   212 LFSRVVENNSSFTKMITLMGQKYLVPPKSSFLLSDISCMHPLLNCKKT--YDVIVIDPPW 269

Query:   151 ENGSARQKSVY 161
             +N S ++ + Y
Sbjct:   270 QNKSVKRSNRY 280

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|E2RJ25 METTL4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 114 (45.2 bits), Expect = 8.6e-08, Sum P(2) = 8.6e-08
 Identities = 22/71 (30%), Positives = 42/71 (59%)

Query:    91 LFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150
             LF+ +V N +       ++ + Y++P +S F +SD+  +H L+       +++IVIDPPW
Sbjct:   233 LFSRVVENNSSFTKMITLMGQKYLVPPKSSFLLSDISCMHPLLNCRKT--YDVIVIDPPW 290

Query:   151 ENGSARQKSVY 161
             +N S ++ + Y
Sbjct:   291 QNKSVKRSNRY 301

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|J3KNJ7 METTL4 "Methyltransferase-like protein 4" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:    91 LFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150
             LF  +V N +       ++ + Y+LP +S F +SD+  +  L+       F++IVIDPPW
Sbjct:   233 LFLRVVENNSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKT--FDVIVIDPPW 290

Query:   151 ENGSARQKSVY 161
             +N S ++ + Y
Sbjct:   291 QNKSVKRSNRY 301

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|Q8N3J2 METTL4 "Methyltransferase-like protein 4" [Homo sapiens (taxid:9606)]

 Score = 106 (42.4 bits), Expect = 1.6e-06, Sum P(2) = 1.6e-06
 Identities = 23/71 (32%), Positives = 40/71 (56%)

Query:    91 LFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150
             LF  +V N +       ++ + Y+LP +S F +SD+  +  L+       F++IVIDPPW
Sbjct:   233 LFLRVVENNSSFTKVITLMGQKYLLPPKSSFLLSDISCMQPLLNYRKT--FDVIVIDPPW 290

Query:   151 ENGSARQKSVY 161
             +N S ++ + Y
Sbjct:   291 QNKSVKRSNRY 301

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

UNIPROTKB|E1BLJ0 METTL4 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 117 (46.2 bits), Expect = 2.8e-06, P = 2.8e-06
 Identities = 23/71 (32%), Positives = 42/71 (59%)

Query:    91 LFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW 150
             LF+ +V N +       ++ + Y+LP +S F +SD+  +H L+       +++IVIDPPW
Sbjct:   230 LFSRIVENTSSFTKIITLMGQKYLLPPKSSFLLSDISCMHPLLNCKKT--YDVIVIDPPW 287

Query:   151 ENGSARQKSVY 161
             +N S ++ + Y
Sbjct:   288 QNKSVKRSNRY 298

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

MGI|MGI:1924031 Mettl4 "methyltransferase like 4" [Mus musculus (taxid:10090)]

 Score = 116 (45.9 bits), Expect = 3.5e-06, P = 3.5e-06
 Identities = 25/75 (33%), Positives = 43/75 (57%)

Query:    89 LPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCG--FNLIVI 146
             L L + ++ N +       ++ + Y+LP +S F +SD+  +  L+    +CG  F+ IVI
Sbjct:   230 LDLSSQIIENNSSFSKMITLMGQKYLLPPQSSFLLSDISCMQPLL----NCGKTFDAIVI 285

Query:   147 DPPWENGSARQKSVY 161
             DPPWEN S ++ + Y
Sbjct:   286 DPPWENKSVKRSNRY 300

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0032259 "methylation" evidence=IEA

RGD|1306451 Mettl4 "methyltransferase like 4" [Rattus norvegicus (taxid:10116)]

 Score = 114 (45.2 bits), Expect = 5.4e-06, P = 5.4e-06
 Identities = 23/73 (31%), Positives = 42/73 (57%)

Query:    89 LPLFNNLVANETGDDVEAEILDRTYILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDP 148
             L L + ++ N +       ++ + Y+LP +S F +SD+  +  L+  +    F++IVIDP
Sbjct:   209 LDLSSRIIENNSSFSKMITLMGQRYLLPPKSSFLLSDISCMQPLLNCNKT--FDVIVIDP 266

Query:   149 PWENGSARQKSVY 161
             PWEN S ++ + Y
Sbjct:   267 PWENKSVKRSNRY 279


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.139   0.424    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      161       145   0.00071  103 3  11 22  0.45    31
                                                     30  0.49    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  593 (63 KB)
  Total size of DFA:  151 KB (2091 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.49u 0.08s 13.57t   Elapsed:  00:00:02
  Total cpu time:  13.49u 0.08s 13.57t   Elapsed:  00:00:02
  Start:  Mon May 20 21:45:04 2013   End:  Mon May 20 21:45:06 2013

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0006139 "nucleobase-containing compound metabolic process" evidence=IEA

GO:0008168 "methyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	161
KOG2356	366	consensus Transcriptional activator, adenine-speci	99.83
PF13659	117	Methyltransf_26: Methyltransferase domain; PDB: 3G	95.15
PF09445	163	Methyltransf_15: RNA cap guanine-N2 methyltransfer	94.82
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	93.25
PF10672	286	Methyltrans_SAM: S-adenosylmethionine-dependent me	92.68
PF10237	162	N6-adenineMlase: Probable N6-adenine methyltransfe	92.54
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	88.14
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	87.96
PF03602	183	Cons_hypoth95: Conserved hypothetical protein 95;	86.66
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	83.97
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	82.7
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	82.62
KOG2097	397	consensus Predicted N6-adenine methylase involved	82.59
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	81.84
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	81.75
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	80.95
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	80.67
PF01861	243	DUF43: Protein of unknown function DUF43; InterPro	80.5

>KOG2356 consensus Transcriptional activator, adenine-specific DNA methyltransferase [Transcription; Signal transduction mechanisms]

Probab=99.83  E-value=1e-21  Score=171.23  Aligned_cols=153  Identities=20%  Similarity=0.204  Sum_probs=104.8

Q ss_pred             HHHHHhhhhhhHHHHH--HHHHHHHHhhhhhhhccC-CCc----CCCccccc-------chhhhhhhhcccccchhhhhc
Q 031322            8 AADQRHQEVKPLLLIA--HEALLAAIDLLNFVGKLN-GDF----GSSMKCGV-------EESFIELGRVWQAPMYEITLN   73 (161)
Q Consensus         8 ~a~~~H~k~r~lil~~--~~~L~~~~~~l~~~~~l~-~~~----~~~~~~~~-------e~al~eL~~~~~ap~c~~~~~   73 (161)
                      ..+.||.-.|.+++.+  ....++...--+.++... .++    +.|+.+.|       +.....+..+.++++|++++.
T Consensus        26 ~~e~Y~~~~k~~~d~qf~akkt~g~~l~s~~rkr~~e~~~~~~q~~DKss~v~~~~~i~k~~tl~l~~~~~~E~aela~~  105 (366)
T KOG2356|consen   26 RSELYEISSKFMPDSQFEAKKTRGISLRSRKRKRTSENSNRMEQMADKSSNVGTELKIFKKKTLLLNNLKSREAAELALN  105 (366)
T ss_pred             hhhhhhhhhhhCcccchhhhhhhhhhhhcchhhhhhhhccchhhhhhccccccchhhhccccchhhhhhhHHHhhHHHHh
Confidence            3578999999999888  444444422222222211 110    22322322       233344556789999999998


Q ss_pred             cCCCCccccc-----ccC---Cccccccccccc--CCCcchhhhhcC---ceeecCCCCccccCCchhhcccCCCCCCCC
Q 031322           74 FNQCSVIDQF-----REP---RVLPLFNNLVAN--ETGDDVEAEILD---RTYILPRESCFFMSDLGQIHNLIPADSDCG  140 (161)
Q Consensus        74 ~~~~s~~~~~-----~~~---~~~~lfn~~v~N--~~~~~~~~e~~~---~~y~iPp~S~Fl~~di~~~~~l~~~~~~~~  140 (161)
                      ++..++.+..     -++   ...++||..+.|  .++.+..+.++|   .+|+|||+|+|++|||.++.+++.+ +...
T Consensus       106 lS~p~e~e~s~pii~fed~~~~~~~m~n~~~~n~~~~s~qk~~~~dGs~g~kYyIPpkSsF~~gDv~~~~qll~~-H~ll  184 (366)
T KOG2356|consen  106 LSIPSESESSEPIIEFEDSESLSNLMSNGMINNWVRCSGQKPGIIDGSDGTKYYIPPKSSFHVGDVKDIEQLLRA-HDLL  184 (366)
T ss_pred             cCCcccccccccceeehhhcchHHHHHhHhhhhhhcccccceeEeeCCCcceEEeCCccceecccHHHHHHHhHH-Hhhc
Confidence            8755444322     111   225688888888  666666666654   5899999999999999999999854 5677


Q ss_pred             ccEEEEcCCCCCcccccccCC
Q 031322          141 FNLIVIDPPWENGSARQKSVY  161 (161)
Q Consensus       141 FdlIvlDPPW~NkSvrRk~~Y  161 (161)
                      ||+||+||||+||||||+++|
T Consensus       185 pdlIIiDPPW~NKSVkRs~~Y  205 (366)
T KOG2356|consen  185 PDLIIIDPPWFNKSVKRSRTY  205 (366)
T ss_pred             CCeEEeCCCCCCcccccccce
Confidence            899999999999999999998

>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A

Probab=95.15  E-value=0.011  Score=42.15  Aligned_cols=36  Identities=25%  Similarity=0.446  Sum_probs=25.6

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      -.+..|+.+|+....+.+   ...+||+||.||||-+..
T Consensus        49 ~~~~~~~~~D~~~~~~~~---~~~~~D~Iv~npP~~~~~   84 (117)
T PF13659_consen   49 DDRVEVIVGDARDLPEPL---PDGKFDLIVTNPPYGPRS   84 (117)
T ss_dssp             TTTEEEEESHHHHHHHTC---TTT-EEEEEE--STTSBT
T ss_pred             CceEEEEECchhhchhhc---cCceeEEEEECCCCcccc
Confidence            345789999998887556   348899999999998753

...

>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]

Probab=94.82  E-value=0.018  Score=46.48  Aligned_cols=47  Identities=21%  Similarity=0.482  Sum_probs=26.9

Q ss_pred             eecCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcccccccCC
Q 031322          113 YILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQKSVY  161 (161)
Q Consensus       113 y~iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSvrRk~~Y  161 (161)
                      |=+-.+-.|+++|..++...+..  ...||+|.+||||-..+=+++..|
T Consensus        44 YGv~~~I~~i~gD~~~~~~~~~~--~~~~D~vFlSPPWGGp~Y~~~~~f   90 (163)
T PF09445_consen   44 YGVADNIDFICGDFFELLKRLKS--NKIFDVVFLSPPWGGPSYSKKDVF   90 (163)
T ss_dssp             TT-GGGEEEEES-HHHHGGGB--------SEEEE---BSSGGGGGSSSB
T ss_pred             cCCCCcEEEEeCCHHHHHhhccc--cccccEEEECCCCCCccccccCcc
Confidence            33444568999999987765532  233999999999998777766544

Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=93.25  E-value=0.029  Score=50.92  Aligned_cols=40  Identities=23%  Similarity=0.304  Sum_probs=28.3

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcccc
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSAR  156 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSvr  156 (161)
                      +.+-.|+.+|+-.+-+.... .+.+|||||||||=.-||-+
T Consensus       267 ~~~~~~i~~Dvf~~l~~~~~-~g~~fDlIilDPPsF~r~k~  306 (393)
T COG1092         267 GDRHRFIVGDVFKWLRKAER-RGEKFDLIILDPPSFARSKK  306 (393)
T ss_pred             ccceeeehhhHHHHHHHHHh-cCCcccEEEECCcccccCcc
Confidence            44567899998776544432 46799999999996555543

>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species

Probab=92.68  E-value=0.025  Score=49.17  Aligned_cols=34  Identities=24%  Similarity=0.389  Sum_probs=20.3

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      +.+-+|+.+|+-..-..+  ....+||+||||||=.
T Consensus       173 ~~~~~~~~~Dvf~~l~~~--~~~~~fD~IIlDPPsF  206 (286)
T PF10672_consen  173 LDRHRFIQGDVFKFLKRL--KKGGRFDLIILDPPSF  206 (286)
T ss_dssp             CTCEEEEES-HHHHHHHH--HHTT-EEEEEE--SSE
T ss_pred             ccceEEEecCHHHHHHHH--hcCCCCCEEEECCCCC
Confidence            456789999997633223  1245899999999944

The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.

>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre

Probab=92.54  E-value=0.081  Score=42.54  Aligned_cols=39  Identities=23%  Similarity=0.537  Sum_probs=25.0

Q ss_pred             cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322          115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA  155 (161)
Q Consensus       115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv  155 (161)
                      .+++ .|..-|...-.. ++.....+||+||+|||+-+.-.
T Consensus        63 ~~~~-~F~fyD~~~p~~-~~~~l~~~~d~vv~DPPFl~~ec  101 (162)
T PF10237_consen   63 FGGD-EFVFYDYNEPEE-LPEELKGKFDVVVIDPPFLSEEC  101 (162)
T ss_pred             cCCc-ceEECCCCChhh-hhhhcCCCceEEEECCCCCCHHH
Confidence            3444 566666655433 33333568999999999976543

This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=88.14  E-value=0.21  Score=44.97  Aligned_cols=34  Identities=26%  Similarity=0.393  Sum_probs=23.9

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      .+.+|+.+|+...-.-+. ....+||+||+|||--
T Consensus       271 ~~v~~i~~D~~~~l~~~~-~~~~~fDlVilDPP~f  304 (396)
T PRK15128        271 SKAEFVRDDVFKLLRTYR-DRGEKFDVIVMDPPKF  304 (396)
T ss_pred             CcEEEEEccHHHHHHHHH-hcCCCCCEEEECCCCC
Confidence            356899999977542221 1245799999999963

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=87.96  E-value=0.28  Score=40.16  Aligned_cols=30  Identities=13%  Similarity=0.321  Sum_probs=20.9

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      +..|+.+|+...-.   . ....||+|++|||+.
T Consensus       103 ~v~~~~~D~~~~l~---~-~~~~fDlV~~DPPy~  132 (199)
T PRK10909        103 NARVVNTNALSFLA---Q-PGTPHNVVFVDPPFR  132 (199)
T ss_pred             cEEEEEchHHHHHh---h-cCCCceEEEECCCCC
Confidence            46788888865321   1 134699999999974

>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH

Probab=86.66  E-value=0.41  Score=38.62  Aligned_cols=35  Identities=23%  Similarity=0.447  Sum_probs=18.8

Q ss_pred             CCccccCCc-hhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          118 ESCFFMSDL-GQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       118 ~S~Fl~~di-~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      +..-+.+|. ..+.++.  ....+||+|.+|||.....
T Consensus        93 ~~~v~~~d~~~~l~~~~--~~~~~fDiIflDPPY~~~~  128 (183)
T PF03602_consen   93 KIRVIKGDAFKFLLKLA--KKGEKFDIIFLDPPYAKGL  128 (183)
T ss_dssp             GEEEEESSHHHHHHHHH--HCTS-EEEEEE--STTSCH
T ss_pred             ceeeeccCHHHHHHhhc--ccCCCceEEEECCCcccch
Confidence            334445553 3333332  1358899999999998764

They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=83.97  E-value=0.66  Score=41.10  Aligned_cols=30  Identities=17%  Similarity=0.289  Sum_probs=21.9

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      +..|+.+|+...-...    ..+||+||+|||+.
T Consensus       282 ~~~~~~~d~~~~~~~~----~~~~D~vi~DPPr~  311 (374)
T TIGR02085       282 NLSFAALDSAKFATAQ----MSAPELVLVNPPRR  311 (374)
T ss_pred             cEEEEECCHHHHHHhc----CCCCCEEEECCCCC
Confidence            6789999997653211    24599999999964

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=82.70  E-value=0.76  Score=38.52  Aligned_cols=30  Identities=13%  Similarity=0.297  Sum_probs=20.4

Q ss_pred             ccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          120 CFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       120 ~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      +|+.+|+...   ++.....+||+||.||||-.
T Consensus       136 ~~~~~D~~~~---l~~~~~~~fDlVv~NPPy~~  165 (251)
T TIGR03704       136 TVHEGDLYDA---LPTALRGRVDILAANAPYVP  165 (251)
T ss_pred             EEEEeechhh---cchhcCCCEeEEEECCCCCC
Confidence            6888887542   21111356999999999963

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=82.62  E-value=0.83  Score=39.25  Aligned_cols=31  Identities=19%  Similarity=0.229  Sum_probs=22.8

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      ....|+.+|+..+....    ..+||+||+|||..
T Consensus       221 ~~v~~~~~D~~~~~~~~----~~~~D~Vv~dPPr~  251 (315)
T PRK03522        221 TNVQFQALDSTQFATAQ----GEVPDLVLVNPPRR  251 (315)
T ss_pred             CceEEEEcCHHHHHHhc----CCCCeEEEECCCCC
Confidence            46789999998764221    24699999999954

>KOG2097 consensus Predicted N6-adenine methylase involved in transcription regulation [Transcription]

Probab=82.59  E-value=0.5  Score=42.63  Aligned_cols=33  Identities=24%  Similarity=0.529  Sum_probs=24.3

Q ss_pred             cccCCchhhcccCCCCCCCCccEEEEcCCCCCccccc
Q 031322          121 FFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSARQ  157 (161)
Q Consensus       121 Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSvrR  157 (161)
                      |+-+||..+...+   ...|||+|++||||+- +|++
T Consensus       144 ylk~di~si~~~~---l~~kfdvil~~pp~ee-yv~~  176 (397)
T KOG2097|consen  144 YLKADIDSIDPTL---LGNKFDVILNEPPLEE-YVRM  176 (397)
T ss_pred             eeecccceeehhh---cccceeeeecCCcHHH-HHHh
Confidence            4567887776443   3689999999999986 4443

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=81.84  E-value=0.89  Score=40.97  Aligned_cols=34  Identities=24%  Similarity=0.474  Sum_probs=23.1

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      +..|+.+|+...-.-.+. ...+||+||+|||+..
T Consensus       346 ~v~~~~~d~~~~l~~~~~-~~~~fD~Vi~dPPr~g  379 (443)
T PRK13168        346 NVTFYHANLEEDFTDQPW-ALGGFDKVLLDPPRAG  379 (443)
T ss_pred             ceEEEEeChHHhhhhhhh-hcCCCCEEEECcCCcC
Confidence            578999998764211111 1346999999999864

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=81.75  E-value=0.65  Score=41.01  Aligned_cols=33  Identities=15%  Similarity=0.291  Sum_probs=21.8

Q ss_pred             CCccccCCchhhcccCCCC-----------CCCCccEEEEcCCC
Q 031322          118 ESCFFMSDLGQIHNLIPAD-----------SDCGFNLIVIDPPW  150 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~-----------~~~~FdlIvlDPPW  150 (161)
                      +..|+.+|+...-+.+...           ...+||+||+|||=
T Consensus       255 ~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~~~~D~v~lDPPR  298 (362)
T PRK05031        255 NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKSYNFSTIFVDPPR  298 (362)
T ss_pred             cEEEEECCHHHHHHHHhhcccccccccccccCCCCCEEEECCCC
Confidence            6789999998743222110           02369999999993

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=80.95  E-value=0.9  Score=43.64  Aligned_cols=34  Identities=29%  Similarity=0.317  Sum_probs=24.6

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      .+.+|+.+|+.+.-.-+    ..+||+||+|||---++
T Consensus       589 ~~v~~i~~D~~~~l~~~----~~~fDlIilDPP~f~~~  622 (702)
T PRK11783        589 RQHRLIQADCLAWLKEA----REQFDLIFIDPPTFSNS  622 (702)
T ss_pred             cceEEEEccHHHHHHHc----CCCcCEEEECCCCCCCC
Confidence            46799999987643212    35799999999976543

>TIGR00095 RNA methyltransferase, RsmD family

Probab=80.67  E-value=0.94  Score=36.48  Aligned_cols=34  Identities=21%  Similarity=0.192  Sum_probs=22.3

Q ss_pred             CCCccccCCchhh-cccCCCCCCCCccEEEEcCCCCC
Q 031322          117 RESCFFMSDLGQI-HNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       117 p~S~Fl~~di~~~-~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      .+..++.+|+... ..+. . ....||+|++|||...
T Consensus        99 ~~~~~~~~D~~~~l~~~~-~-~~~~~dvv~~DPPy~~  133 (189)
T TIGR00095        99 EQAEVVRNSALRALKFLA-K-KPTFDNVIYLDPPFFN  133 (189)
T ss_pred             ccEEEEehhHHHHHHHhh-c-cCCCceEEEECcCCCC
Confidence            3567888888543 3222 1 2245999999999864

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised

Probab=80.50  E-value=1.1  Score=38.66  Aligned_cols=26  Identities=19%  Similarity=0.584  Sum_probs=14.3

Q ss_pred             hhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          128 QIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       128 ~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      +++..+|.....+||+++-||||.=.
T Consensus       100 DlR~~LP~~~~~~fD~f~TDPPyT~~  125 (243)
T PF01861_consen  100 DLRDPLPEELRGKFDVFFTDPPYTPE  125 (243)
T ss_dssp             -TTS---TTTSS-BSEEEE---SSHH
T ss_pred             cccccCCHHHhcCCCEEEeCCCCCHH
Confidence            45778887677999999999999643

All the members are 350-400 amino acids long.; PDB: 2QM3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	161
1boo_A	323	Protein (N-4 cytosine-specific methyltransferase P	91.56
2zig_A	297	TTHA0409, putative modification methylase; methylt	91.06
3lpm_A	259	Putative methyltransferase; structural genomics, p	90.57
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	89.86
2h00_A	254	Methyltransferase 10 domain containing protein; st	88.45
2oo3_A	283	Protein involved in catabolism of external DNA; st	87.74
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	87.31
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	86.32
1eg2_A	319	Modification methylase RSRI; rossmann fold, exocyc	86.25
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	85.27
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	85.23
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	85.23
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	84.76
3ll7_A	410	Putative methyltransferase; methytransferase, stru	84.58
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	84.16
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	83.12
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	82.62
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	82.05
2esr_A	177	Methyltransferase; structural genomics, hypothetic	81.64
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	81.25
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	81.19
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	80.56

>1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11

Probab=91.56  E-value=0.11  Score=43.39  Aligned_cols=38  Identities=13%  Similarity=0.355  Sum_probs=27.8

Q ss_pred             eecCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          113 YILPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       113 y~iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      ++--....++.+|....-..++   +.+||+|++|||+...
T Consensus         9 ~~~~~~~~ii~gD~~~~l~~l~---~~svDlI~tDPPY~~~   46 (323)
T 1boo_A            9 AYTTSNGSMYIGDSLELLESFP---EESISLVMTSPPFALQ   46 (323)
T ss_dssp             SEECSSEEEEESCHHHHGGGSC---SSCEEEEEECCCCSSS
T ss_pred             eeecCCceEEeCcHHHHHhhCC---CCCeeEEEECCCCCCC
Confidence            4445566788999877555563   3579999999999764

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=91.06  E-value=0.11  Score=42.47  Aligned_cols=32  Identities=19%  Similarity=0.439  Sum_probs=25.3

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      ...++.+|..+.-..++   +.+|||||.|||+.+
T Consensus        21 ~~~i~~gD~~~~l~~l~---~~s~DlIvtdPPY~~   52 (297)
T 2zig_A           21 VHRLHVGDAREVLASFP---EASVHLVVTSPPYWT   52 (297)
T ss_dssp             CEEEEESCHHHHHTTSC---TTCEEEEEECCCCCC
T ss_pred             CCEEEECcHHHHHhhCC---CCceeEEEECCCCCC
Confidence            56789999988655553   367999999999965

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=90.57  E-value=0.18  Score=39.67  Aligned_cols=35  Identities=23%  Similarity=0.403  Sum_probs=25.4

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      ..+..|+.+|+..+...++   ..+||+||.||||...
T Consensus        98 ~~~v~~~~~D~~~~~~~~~---~~~fD~Ii~npPy~~~  132 (259)
T 3lpm_A           98 EDQIEIIEYDLKKITDLIP---KERADIVTCNPPYFAT  132 (259)
T ss_dssp             TTTEEEECSCGGGGGGTSC---TTCEEEEEECCCC---
T ss_pred             cccEEEEECcHHHhhhhhc---cCCccEEEECCCCCCC
Confidence            3456889999988776552   4689999999998654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=89.86  E-value=0.18  Score=41.44  Aligned_cols=32  Identities=9%  Similarity=0.035  Sum_probs=23.7

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      +.+|+.+|...+-+.++    ..||+|++|||++.+
T Consensus       146 ~i~~~~~D~~~~L~~~~----~~fDvV~lDP~y~~~  177 (258)
T 2oyr_A          146 RLQLIHASSLTALTDIT----PRPQVVYLDPMFPHK  177 (258)
T ss_dssp             HEEEEESCHHHHSTTCS----SCCSEEEECCCCCCC
T ss_pred             CEEEEECCHHHHHHhCc----ccCCEEEEcCCCCCc
Confidence            45788888877643332    259999999999874

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=88.45  E-value=0.32  Score=37.72  Aligned_cols=37  Identities=8%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             CCCCccccCCchh-hcccCCCCCCCCccEEEEcCCCCC
Q 031322          116 PRESCFFMSDLGQ-IHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       116 Pp~S~Fl~~di~~-~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      +.+..|+.+|+.+ +...++.....+||+||.|||+..
T Consensus       115 ~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~  152 (254)
T 2h00_A          115 SDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFA  152 (254)
T ss_dssp             TTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-
T ss_pred             CccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCcc
Confidence            4456888888766 333343211257999999999864

>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59

Probab=87.74  E-value=0.25  Score=41.86  Aligned_cols=35  Identities=26%  Similarity=0.388  Sum_probs=25.8

Q ss_pred             CCCccccCCch-hhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          117 RESCFFMSDLG-QIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       117 p~S~Fl~~di~-~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      .+...+..|.. .+..+.+.  ..+||||.||||.+-+
T Consensus       137 ~~~~V~~~D~~~~L~~l~~~--~~~fdLVfiDPPYe~k  172 (283)
T 2oo3_A          137 KKVYVNHTDGVSKLNALLPP--PEKRGLIFIDPSYERK  172 (283)
T ss_dssp             SCEEEECSCHHHHHHHHCSC--TTSCEEEEECCCCCST
T ss_pred             CcEEEEeCcHHHHHHHhcCC--CCCccEEEECCCCCCC
Confidence            56777888854 46666643  4679999999999854

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=87.31  E-value=0.24  Score=36.70  Aligned_cols=33  Identities=12%  Similarity=0.261  Sum_probs=25.8

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      ++..|+.+|+..+...++   ..+||+|++|||+..
T Consensus        93 ~~v~~~~~d~~~~~~~~~---~~~fD~i~~~~p~~~  125 (189)
T 3p9n_A           93 SGATLRRGAVAAVVAAGT---TSPVDLVLADPPYNV  125 (189)
T ss_dssp             SCEEEEESCHHHHHHHCC---SSCCSEEEECCCTTS
T ss_pred             CceEEEEccHHHHHhhcc---CCCccEEEECCCCCc
Confidence            467899999988754342   467999999999875

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=86.32  E-value=0.13  Score=43.65  Aligned_cols=38  Identities=21%  Similarity=0.287  Sum_probs=26.8

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA  155 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv  155 (161)
                      .+..|+.+|+...-..+.. ...+||+||+|||...++-
T Consensus       271 ~~v~~~~~D~~~~~~~~~~-~~~~fD~Ii~dpP~~~~~~  308 (396)
T 3c0k_A          271 SKAEFVRDDVFKLLRTYRD-RGEKFDVIVMDPPKFVENK  308 (396)
T ss_dssp             GGEEEEESCHHHHHHHHHH-TTCCEEEEEECCSSTTTCS
T ss_pred             cceEEEECCHHHHHHHHHh-cCCCCCEEEECCCCCCCCh
Confidence            3678999999876432211 2467999999999876543

>1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A

Probab=86.25  E-value=0.3  Score=41.08  Aligned_cols=30  Identities=27%  Similarity=0.483  Sum_probs=22.0

Q ss_pred             cc-cCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          121 FF-MSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       121 Fl-~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      .+ .+|....-..++   +.+||||++|||+...
T Consensus        41 l~i~gD~l~~L~~l~---~~svDlI~tDPPY~~~   71 (319)
T 1eg2_A           41 VYDVCDCLDTLAKLP---DDSVQLIICDPPYNIM   71 (319)
T ss_dssp             EEEECCHHHHHHTSC---TTCEEEEEECCCSBCC
T ss_pred             EEECCcHHHHHHhCc---cCCcCEEEECCCCCCC
Confidence            44 788866555564   3579999999999764

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=85.27  E-value=0.19  Score=42.85  Aligned_cols=34  Identities=18%  Similarity=0.312  Sum_probs=24.0

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      +..|+.+|+...-..+.. ...+||+||+|||...
T Consensus       264 ~v~~~~~D~~~~l~~~~~-~~~~fD~Ii~DPP~~~  297 (385)
T 2b78_A          264 NHQLVVMDVFDYFKYARR-HHLTYDIIIIDPPSFA  297 (385)
T ss_dssp             TEEEEESCHHHHHHHHHH-TTCCEEEEEECCCCC-
T ss_pred             ceEEEECCHHHHHHHHHH-hCCCccEEEECCCCCC
Confidence            678999999774322211 2457999999999964

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=85.23  E-value=0.48  Score=35.93  Aligned_cols=32  Identities=13%  Similarity=0.306  Sum_probs=23.4

Q ss_pred             CCCccccCCchhhcccCCCCCCCC-ccEEEEcCCCC
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCG-FNLIVIDPPWE  151 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~-FdlIvlDPPW~  151 (161)
                      ++..|+.+|+......+   ...+ ||+|++|||+.
T Consensus       104 ~~v~~~~~d~~~~~~~~---~~~~~fD~I~~~~~~~  136 (201)
T 2ift_A          104 EQAEVINQSSLDFLKQP---QNQPHFDVVFLDPPFH  136 (201)
T ss_dssp             TTEEEECSCHHHHTTSC---CSSCCEEEEEECCCSS
T ss_pred             cceEEEECCHHHHHHhh---ccCCCCCEEEECCCCC
Confidence            45688899987764332   1357 99999999964

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=85.23  E-value=0.16  Score=41.20  Aligned_cols=36  Identities=6%  Similarity=0.162  Sum_probs=22.6

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      .+-+|+.+|...+-+.++. ....||+|++||||+.+
T Consensus       139 ~ri~~~~~d~~~~l~~~~~-~~~~fD~V~~dP~~~~~  174 (258)
T 2r6z_A          139 ARINLHFGNAAEQMPALVK-TQGKPDIVYLDPMYPER  174 (258)
T ss_dssp             TTEEEEESCHHHHHHHHHH-HHCCCSEEEECCCC---
T ss_pred             cCeEEEECCHHHHHHhhhc-cCCCccEEEECCCCCCc
Confidence            3467889998775432311 01469999999999874

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=84.76  E-value=0.51  Score=35.14  Aligned_cols=28  Identities=18%  Similarity=0.532  Sum_probs=20.6

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      +..|+.+|+..+.        .+||+||+||||...
T Consensus        96 ~~~~~~~d~~~~~--------~~~D~v~~~~p~~~~  123 (200)
T 1ne2_A           96 GVNFMVADVSEIS--------GKYDTWIMNPPFGSV  123 (200)
T ss_dssp             TSEEEECCGGGCC--------CCEEEEEECCCC---
T ss_pred             CCEEEECcHHHCC--------CCeeEEEECCCchhc
Confidence            6788899987642        479999999998654

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=84.58  E-value=0.12  Score=45.58  Aligned_cols=35  Identities=20%  Similarity=0.377  Sum_probs=23.3

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      .+.+|+.+|+...-+.+   ...+||+|++|||+.+..
T Consensus       143 ~~i~~i~~Da~~~L~~~---~~~~fDvV~lDPPrr~~~  177 (410)
T 3ll7_A          143 KDVNILTGDFKEYLPLI---KTFHPDYIYVDPARRSGA  177 (410)
T ss_dssp             CEEEEEESCGGGSHHHH---HHHCCSEEEECCEEC---
T ss_pred             CcEEEEECcHHHhhhhc---cCCCceEEEECCCCcCCC
Confidence            45689999987742212   124699999999999853

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=84.16  E-value=0.2  Score=42.40  Aligned_cols=38  Identities=16%  Similarity=0.222  Sum_probs=26.7

Q ss_pred             CCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322          117 RESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA  155 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv  155 (161)
                      .+..|+.+|+......+.. ...+||+||+|||...++.
T Consensus       267 ~~v~~~~~d~~~~~~~~~~-~~~~fD~Vi~dpP~~~~~~  304 (396)
T 2as0_A          267 DRMKFIVGSAFEEMEKLQK-KGEKFDIVVLDPPAFVQHE  304 (396)
T ss_dssp             GGEEEEESCHHHHHHHHHH-TTCCEEEEEECCCCSCSSG
T ss_pred             ccceEEECCHHHHHHHHHh-hCCCCCEEEECCCCCCCCH
Confidence            3568999998776433211 2467999999999876543

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=83.12  E-value=0.15  Score=36.99  Aligned_cols=35  Identities=20%  Similarity=0.387  Sum_probs=24.2

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      +++..|+.+|+......++. ...+||+|++|||+.
T Consensus        93 ~~~~~~~~~d~~~~~~~~~~-~~~~fD~i~~~~~~~  127 (187)
T 2fhp_A           93 PEKFEVRKMDANRALEQFYE-EKLQFDLVLLDPPYA  127 (187)
T ss_dssp             GGGEEEEESCHHHHHHHHHH-TTCCEEEEEECCCGG
T ss_pred             CcceEEEECcHHHHHHHHHh-cCCCCCEEEECCCCC
Confidence            34568889998775432221 246799999999964

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=82.62  E-value=0.47  Score=39.90  Aligned_cols=35  Identities=11%  Similarity=0.175  Sum_probs=24.1

Q ss_pred             CCCccccCCchhhcccCCCCC-----------CCCccEEEEcCCCC
Q 031322          117 RESCFFMSDLGQIHNLIPADS-----------DCGFNLIVIDPPWE  151 (161)
Q Consensus       117 p~S~Fl~~di~~~~~l~~~~~-----------~~~FdlIvlDPPW~  151 (161)
                      .+.+|+.+|+.++-..+....           ..+||+||+|||..
T Consensus       261 ~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~dPPr~  306 (369)
T 3bt7_A          261 DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFVDPPRS  306 (369)
T ss_dssp             CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEECCCTT
T ss_pred             CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEECcCcc
Confidence            367899999987643332110           13799999999975

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=82.05  E-value=1  Score=37.27  Aligned_cols=32  Identities=16%  Similarity=0.150  Sum_probs=23.6

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      .-.|..+|+.++...     ...||+||.||||-.+.
T Consensus       255 ~i~~~~~D~~~~~~~-----~~~~D~Ii~npPyg~r~  286 (354)
T 3tma_A          255 WIRFLRADARHLPRF-----FPEVDRILANPPHGLRL  286 (354)
T ss_dssp             TCEEEECCGGGGGGT-----CCCCSEEEECCCSCC--
T ss_pred             ceEEEeCChhhCccc-----cCCCCEEEECCCCcCcc
Confidence            678999999887532     24599999999997643

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=81.64  E-value=0.42  Score=34.72  Aligned_cols=31  Identities=16%  Similarity=0.442  Sum_probs=22.6

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCC
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPW  150 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW  150 (161)
                      +++..|+.+|+...-..+    ..+||+|++|||+
T Consensus        80 ~~~~~~~~~d~~~~~~~~----~~~fD~i~~~~~~  110 (177)
T 2esr_A           80 ENRFTLLKMEAERAIDCL----TGRFDLVFLDPPY  110 (177)
T ss_dssp             GGGEEEECSCHHHHHHHB----CSCEEEEEECCSS
T ss_pred             CCceEEEECcHHHhHHhh----cCCCCEEEECCCC
Confidence            345678899988743333    2459999999997

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=81.25  E-value=0.82  Score=34.55  Aligned_cols=32  Identities=22%  Similarity=0.452  Sum_probs=22.0

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      ...|+.+|+..+..+.    ..+||+|+.||||-..
T Consensus       105 ~v~~~~~d~~~~~~~~----~~~fD~I~~npp~~~~  136 (230)
T 3evz_A          105 NVRLVKSNGGIIKGVV----EGTFDVIFSAPPYYDK  136 (230)
T ss_dssp             CCEEEECSSCSSTTTC----CSCEEEEEECCCCC--
T ss_pred             CcEEEeCCchhhhhcc----cCceeEEEECCCCcCC
Confidence            5678888875443322    3679999999998543

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=81.19  E-value=0.37  Score=40.66  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=25.1

Q ss_pred             CccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      ..|+.+|+...-..+.. ...+||+||+|||...++
T Consensus       259 ~~~~~~d~~~~~~~~~~-~~~~fD~Ii~dpP~~~~~  293 (382)
T 1wxx_A          259 VRVLEANAFDLLRRLEK-EGERFDLVVLDPPAFAKG  293 (382)
T ss_dssp             EEEEESCHHHHHHHHHH-TTCCEEEEEECCCCSCCS
T ss_pred             ceEEECCHHHHHHHHHh-cCCCeeEEEECCCCCCCC
Confidence            68999998876432211 246799999999986654

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=80.56  E-value=1.1  Score=33.33  Aligned_cols=29  Identities=14%  Similarity=0.566  Sum_probs=22.1

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      +..|+.+|+..+.        .+||+|++|||+...+
T Consensus        98 ~~~~~~~d~~~~~--------~~~D~v~~~~p~~~~~  126 (207)
T 1wy7_A           98 KFKVFIGDVSEFN--------SRVDIVIMNPPFGSQR  126 (207)
T ss_dssp             SEEEEESCGGGCC--------CCCSEEEECCCCSSSS
T ss_pred             CEEEEECchHHcC--------CCCCEEEEcCCCcccc
Confidence            4678888887642        3799999999986543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	161
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	94.85
d2esra1	152	Putative methyltransferase SPy1538 {Streptococcus	94.57
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	94.29
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	93.16
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	92.94
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	92.76
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	92.18
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	91.81
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	91.68
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	91.65
d2oyra1	250	Hypothetical protein YhiQ {Shigella flexneri [TaxI	91.01
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	90.07
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	89.6

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=94.85  E-value=0.006  Score=45.35  Aligned_cols=33  Identities=18%  Similarity=0.350  Sum_probs=23.0

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGS  154 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkS  154 (161)
                      ...++.+|+...-..    ...+||+|++||||....
T Consensus        93 ~~~ii~~d~~~~l~~----~~~~fDlIf~DPPY~~~~  125 (183)
T d2fpoa1          93 NARVVNSNAMSFLAQ----KGTPHNIVFVDPPFRRGL  125 (183)
T ss_dssp             SEEEECSCHHHHHSS----CCCCEEEEEECCSSSTTT
T ss_pred             ceeeeeecccccccc----cccccCEEEEcCccccch
Confidence            445677777654322    357899999999997643

>d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methyltransferase SPy1538
species: Streptococcus pyogenes [TaxId: 1314]

Probab=94.57  E-value=0.0042  Score=44.75  Aligned_cols=34  Identities=15%  Similarity=0.351  Sum_probs=24.6

Q ss_pred             cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      +..+..++.+|+...-..    ...+||+|++||||..
T Consensus        62 ~~~~~~ii~~D~~~~l~~----~~~~fDiIf~DPPy~~   95 (152)
T d2esra1          62 AENRFTLLKMEAERAIDC----LTGRFDLVFLDPPYAK   95 (152)
T ss_dssp             CGGGEEEECSCHHHHHHH----BCSCEEEEEECCSSHH
T ss_pred             cccchhhhcccccccccc----cccccceeEechhhcc
Confidence            445677888888764322    2467999999999853

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.29  E-value=0.0024  Score=47.79  Aligned_cols=35  Identities=20%  Similarity=0.466  Sum_probs=24.8

Q ss_pred             CCCCccccCCchhhc-ccCCCCCCCCccEEEEcCCCCC
Q 031322          116 PRESCFFMSDLGQIH-NLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~-~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      ..+..++.+|+...- .+.  ....+||+|++||||..
T Consensus        90 ~~~~~i~~~D~~~~l~~~~--~~~~~fDlIflDPPY~~  125 (182)
T d2fhpa1          90 PEKFEVRKMDANRALEQFY--EEKLQFDLVLLDPPYAK  125 (182)
T ss_dssp             GGGEEEEESCHHHHHHHHH--HTTCCEEEEEECCCGGG
T ss_pred             ccccccccccchhhhhhhc--ccCCCcceEEechhhhh
Confidence            446778888887643 333  23568999999999853

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=93.16  E-value=0.016  Score=42.48  Aligned_cols=16  Identities=19%  Similarity=0.505  Sum_probs=13.1

Q ss_pred             CCCCccEEEEcCCCCC
Q 031322          137 SDCGFNLIVIDPPWEN  152 (161)
Q Consensus       137 ~~~~FdlIvlDPPW~N  152 (161)
                      ...+||+|++||||-.
T Consensus       107 ~~~~fD~If~DPPY~~  122 (171)
T d1ws6a1         107 QGERFTVAFMAPPYAM  122 (171)
T ss_dssp             TTCCEEEEEECCCTTS
T ss_pred             cCCccceeEEcccccc
Confidence            3577999999999853

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=92.94  E-value=0.027  Score=41.60  Aligned_cols=31  Identities=13%  Similarity=0.282  Sum_probs=19.5

Q ss_pred             cccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          121 FFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       121 Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      ++..|+.......  ....+||+|.+|||+...
T Consensus        98 ~~~~d~~~~l~~~--~~~~~fDlIFlDPPY~~~  128 (183)
T d2ifta1          98 VINQSSLDFLKQP--QNQPHFDVVFLDPPFHFN  128 (183)
T ss_dssp             EECSCHHHHTTSC--CSSCCEEEEEECCCSSSC
T ss_pred             ccccccccccccc--ccCCcccEEEechhHhhh
Confidence            3445544433322  235679999999998764

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.76  E-value=0.0087  Score=48.29  Aligned_cols=41  Identities=15%  Similarity=0.238  Sum_probs=29.8

Q ss_pred             cCCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCcccc
Q 031322          115 LPRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSAR  156 (161)
Q Consensus       115 iPp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSvr  156 (161)
                      +.....|+.+|+.+.-..++. ...+||+||+|||..-++.+
T Consensus       193 l~~~~~~~~~d~~~~~~~~~~-~~~~fD~Vi~DpP~~~~~~~  233 (324)
T d2as0a2         193 VEDRMKFIVGSAFEEMEKLQK-KGEKFDIVVLDPPAFVQHEK  233 (324)
T ss_dssp             CGGGEEEEESCHHHHHHHHHH-TTCCEEEEEECCCCSCSSGG
T ss_pred             CCccceeeechhhhhhHHHHh-ccCCCCchhcCCccccCCHH
Confidence            345678999998775443332 45789999999998876644

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=92.18  E-value=0.032  Score=41.90  Aligned_cols=25  Identities=16%  Similarity=0.658  Sum_probs=18.9

Q ss_pred             CccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          119 SCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       119 S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      ..|+.+|+..+        ..+||+||+||||-
T Consensus        96 ~~~~~~d~~~~--------~~~fD~Vi~nPP~~  120 (201)
T d1wy7a1          96 FKVFIGDVSEF--------NSRVDIVIMNPPFG  120 (201)
T ss_dssp             EEEEESCGGGC--------CCCCSEEEECCCCS
T ss_pred             ceEEECchhhh--------CCcCcEEEEcCccc
Confidence            46677777543        35799999999994

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.81  E-value=0.013  Score=48.07  Aligned_cols=37  Identities=14%  Similarity=0.182  Sum_probs=25.4

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCCCc
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENG  153 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~Nk  153 (161)
                      +.+-+|+.+|+...-.-.. ....+||+||+|||..-+
T Consensus       181 ~~~~~~i~~D~~~~l~~~~-~~~~~fD~IilDPP~f~~  217 (309)
T d2igta1         181 QAPIRWICEDAMKFIQREE-RRGSTYDIILTDPPKFGR  217 (309)
T ss_dssp             TSCEEEECSCHHHHHHHHH-HHTCCBSEEEECCCSEEE
T ss_pred             CCcEEEEeCCHHHhHHHHh-hcCCCCCEEEECCCcccc
Confidence            3356899999876532221 235789999999996543

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=91.68  E-value=0.015  Score=47.17  Aligned_cols=35  Identities=17%  Similarity=0.280  Sum_probs=24.7

Q ss_pred             CCCCccccCCchhhcccCCCCCCCCccEEEEcCCCC
Q 031322          116 PRESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWE  151 (161)
Q Consensus       116 Pp~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~  151 (161)
                      +.+..|+.+|+...-+.+. ....+||+||+|||=.
T Consensus       194 ~~~~~~i~~d~~~~l~~~~-~~~~~fD~Ii~DPP~f  228 (317)
T d2b78a2         194 MANHQLVVMDVFDYFKYAR-RHHLTYDIIIIDPPSF  228 (317)
T ss_dssp             CTTEEEEESCHHHHHHHHH-HTTCCEEEEEECCCCC
T ss_pred             CcceEEEEccHHHHHHHHH-hhcCCCCEEEEcChhh
Confidence            4567899999976543222 2457899999999933

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=91.65  E-value=0.043  Score=41.82  Aligned_cols=27  Identities=19%  Similarity=0.601  Sum_probs=20.2

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN  152 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N  152 (161)
                      ...|+.+|+.++        ..+||+||+||||-+
T Consensus        93 ~~~~~~~D~~~l--------~~~fD~Vi~NPPfg~  119 (197)
T d1ne2a_          93 GVNFMVADVSEI--------SGKYDTWIMNPPFGS  119 (197)
T ss_dssp             TSEEEECCGGGC--------CCCEEEEEECCCC--
T ss_pred             cccEEEEehhhc--------CCcceEEEeCcccch
Confidence            457889998653        256999999999954

>d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhiQ-like
domain: Hypothetical protein YhiQ
species: Shigella flexneri [TaxId: 623]

Probab=91.01  E-value=0.052  Score=43.13  Aligned_cols=36  Identities=11%  Similarity=-0.015  Sum_probs=20.6

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCC--ccccc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWEN--GSARQ  157 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~N--kSvrR  157 (161)
                      +-+++.+|-.+.-..    ....||+|.+||++|.  ||+..
T Consensus       146 ri~li~~Ds~~~L~~----~~~~~DvIYlDPMFp~~~Ksa~~  183 (250)
T d2oyra1         146 RLQLIHASSLTALTD----ITPRPQVVYLDPMFPHKQKSALV  183 (250)
T ss_dssp             HEEEEESCHHHHSTT----CSSCCSEEEECCCCCCCCC----
T ss_pred             hheeecCcHHHHHhc----cCCCCCEEEECCCCccccccccc
Confidence            345666664443221    2456999999999984  44443

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=90.07  E-value=0.032  Score=44.83  Aligned_cols=37  Identities=16%  Similarity=0.239  Sum_probs=27.3

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCCCCCccc
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPPWENGSA  155 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPPW~NkSv  155 (161)
                      ...|+.+|+.+....+.. ...+||+||+|||..-++.
T Consensus       194 ~~~~i~~d~~~~~~~~~~-~~~~fD~Vi~DpP~~~~~~  230 (318)
T d1wxxa2         194 NVRVLEANAFDLLRRLEK-EGERFDLVVLDPPAFAKGK  230 (318)
T ss_dssp             TEEEEESCHHHHHHHHHH-TTCCEEEEEECCCCSCCST
T ss_pred             CcceeeccHHHHhhhhHh-hhcCCCEEEEcCCccccch
Confidence            567899998876544432 4678999999999866553

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=89.60  E-value=0.057  Score=42.80  Aligned_cols=31  Identities=23%  Similarity=0.478  Sum_probs=22.0

Q ss_pred             CCccccCCchhhcccCCCCCCCCccEEEEcCC
Q 031322          118 ESCFFMSDLGQIHNLIPADSDCGFNLIVIDPP  149 (161)
Q Consensus       118 ~S~Fl~~di~~~~~l~~~~~~~~FdlIvlDPP  149 (161)
                      ...|+.+|+...-.... ....+||+||+|||
T Consensus       261 n~~~~~~~~~~~~~~~~-~~~~~~d~vilDPP  291 (358)
T d1uwva2         261 NVTFYHENLEEDVTKQP-WAKNGFDKVLLDPA  291 (358)
T ss_dssp             SEEEEECCTTSCCSSSG-GGTTCCSEEEECCC
T ss_pred             cceeeecchhhhhhhhh-hhhccCceEEeCCC
Confidence            45788888876543332 23577999999999