Citrus Sinensis ID: 031402

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MKASQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYFDNNLLEELLEARDNQYWPGKE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccHHHHHccccccccEEEEcccccHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccEcccccccccccEEEEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHHcccEEEcccHHHccccccccccccccccHHccHHHHHcHHHcccccccccccccccccccEEEEEcccHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
mkasqgggknnekqrSVSVSEVRYRGIRRRAWGKFAaeirdptrngtrlwlgTFSTAEEAARAYDRAAFafrghsailnfpnegqyrsqsssgssslpylvspsptsfsdaaggngsagrgvlssssgkeaevIEFEYFDNNLLEELLEArdnqywpgke
Flexible Loop (DISEMBL)
mkasqgggknnekqrsvsvsevryrgirrrawgkfaaeirdptrngtrlWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYFDNNLLEELleardnqywpgke
Low Complexity Region (SEG)
MKASQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTaeeaaraydraafafrGHSAILNFPNEGQYRsqsssgssslpylvspsptsFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYFDNNLLEELLEARDNQYWPGKE
Disordered region (IsUnstruct)
*********************VRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNF****************************************************VIEFEYFDNNLLEELLEA**********
Disordered Region (DISOPRED)
**************************IRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN*****************************************************FEYFDNNLLEELLEARDN*YWP***
Disordered Region (DISEMBL)
*******************SEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNE******************SPSPTSFSD******************KEAEVIEFEYFDNNLLEELLEARD********
Disordered Region (DISPRO)
********************EVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEGQY********************************************AEVIEFEYFDNNLLEELLEARD********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKASQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYFDNNLLEELLEARDNQYWPGKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q9LTC5	139	Ethylene-responsive trans	yes	no	0.743	0.856	0.541	1e-29
Q8LDC8	218	Ethylene-responsive trans	no	no	0.793	0.582	0.458	1e-22
O80341	300	Ethylene-responsive trans	no	no	0.556	0.296	0.548	6e-22
Q8VYM0	243	Ethylene-responsive trans	no	no	0.487	0.320	0.632	7e-22
Q40478	291	Ethylene-responsive trans	N/A	no	0.381	0.209	0.737	1e-21
Q9LSX0	131	Ethylene-responsive trans	no	no	0.431	0.526	0.652	2e-21
Q8VZ91	282	Ethylene-responsive trans	no	no	0.518	0.294	0.607	2e-21
Q9FKG1	241	Ethylene-responsive trans	no	no	0.443	0.294	0.619	2e-21
Q9LW48	282	Ethylene-responsive trans	N/A	no	0.381	0.216	0.721	3e-21
Q8VY90	221	Ethylene-responsive trans	no	no	0.387	0.280	0.693	4e-21

>sp|Q9LTC5|ERF98_ARATH Ethylene-responsive transcription factor ERF098 OS=Arabidopsis thaliana GN=ERF098 PE=1 SV=1

 Score =  128 bits (322), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 86/131 (65%), Gaps = 12/131 (9%)

Query: 20  SEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILN 79
            + R+RG+RRR WGKFAAEIRDP+RNG RLWLGTF TAEEAARAYDRAAF  RGH AILN
Sbjct: 16  KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILN 75

Query: 80  FPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYF 139
           FPNE  Y  +    S   PY           ++  + S+G    + S   + EV EFEY 
Sbjct: 76  FPNE--YYPRMDDYSLRPPYA----------SSSSSSSSGSTSTNVSRQNQREVFEFEYL 123

Query: 140 DNNLLEELLEA 150
           D+ +LEELL++
Sbjct: 124 DDKVLEELLDS 134

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8LDC8|ERF92_ARATH Ethylene-responsive transcription factor 1B OS=Arabidopsis thaliana GN=ERF1B PE=1 SV=2

 Score =  105 bits (261), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 66/144 (45%), Positives = 81/144 (56%), Gaps = 17/144 (11%)

Query: 20  SEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILN 79
           SE  YRG+RRR WGKFAAEIRD TRNG R+WLGTF +AEEAA AYD+AAF+ RG SAILN
Sbjct: 78  SEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMRGSSAILN 137

Query: 80  FPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAE------- 132
           F  E   R Q S       Y    SP      A     + R  +++   K+++       
Sbjct: 138 FSAE---RVQESLSEIKYTYEDGCSPV----VALKRKHSMRRRMTNKKTKDSDFDHRSVK 190

Query: 133 ---VIEFEYFDNNLLEELLEARDN 153
              V+ FE      LEELL + +N
Sbjct: 191 LDNVVVFEDLGEQYLEELLGSSEN 214

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression during the plant development, and/or mediated by stress factors and by components of stress signal transduction pathways. Seems to be a key integrator of ethylene and jasmonate signals in the regulation of ethylene/jasmonate-dependent defenses. Can mediate resistance to necrotizing fungi (Botrytis cinerea and Plectosphaerella cucumerina) and to soil borne fungi (Fusarium oxysporum conglutinans and Fusiarium oxysporum lycopersici), but probably not to necrotizing bacteria (Pseudomonas syringae tomato).

Arabidopsis thaliana (taxid: 3702)

>sp|O80341|EF102_ARATH Ethylene-responsive transcription factor 5 OS=Arabidopsis thaliana GN=ERF5 PE=2 SV=1

 Score =  103 bits (256), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/93 (54%), Positives = 65/93 (69%), Gaps = 4/93 (4%)

Query: 5   QGGGKNNEKQRSVSVSE---VRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAA 61
           Q   +N + + +  VSE     YRG+R+R WGKFAAEIRDP + G+R+WLGTF TA EAA
Sbjct: 134 QFAAENTKPEVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAA 193

Query: 62  RAYDRAAFAFRGHSAILNFPNE-GQYRSQSSSG 93
           RAYD AAF  RG  AILNFP E G+++ ++  G
Sbjct: 194 RAYDEAAFRLRGSKAILNFPLEVGKWKPRADEG 226

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYM0|ERF93_ARATH Ethylene-responsive transcription factor 15 OS=Arabidopsis thaliana GN=ERF15 PE=2 SV=1

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/79 (63%), Positives = 59/79 (74%), Gaps = 1/79 (1%)

Query: 6   GGGKNNEKQRSVSVSEVR-YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAY 64
           G   N+E++  V + E R YRG+R+R WGKFAAEIRD TRNG R+WLGTF  AEEAA AY
Sbjct: 67  GDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAY 126

Query: 65  DRAAFAFRGHSAILNFPNE 83
           D+AAFA +G  A LNFP E
Sbjct: 127 DQAAFATKGSLATLNFPVE 145

May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score =  102 bits (254), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 50/61 (81%)

Query: 23  RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
            YRG+R+R WGKFAAEIRDP R GTR+WLGTF TA EAA+AYDRAAF  RG  AI+NFP 
Sbjct: 144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPL 203

Query: 83  E 83
           E
Sbjct: 204 E 204

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LSX0|ERF96_ARATH Ethylene-responsive transcription factor ERF096 OS=Arabidopsis thaliana GN=ERF096 PE=2 SV=1

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 56/69 (81%)

Query: 15 RSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGH 74
          R V     +YRG+RRR WGK+AAEIRD  ++G R+WLGTF TAEEAARAYD+AA++ RG 
Sbjct: 6  RGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQ 65

Query: 75 SAILNFPNE 83
          +AILNFP+E
Sbjct: 66 AAILNFPHE 74

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZ91|EF103_ARATH Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2

 Score =  101 bits (252), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 51/84 (60%), Positives = 58/84 (69%), Gaps = 1/84 (1%)

Query: 1   MKASQGGGKNNEKQRSVSVSEVR-YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEE 59
           ++ + G  K       V+  E R YRG+R R WGKFAAEIRDPTR GTR+WLGTF TA E
Sbjct: 113 IQFATGNPKPELPVPVVAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIE 172

Query: 60  AARAYDRAAFAFRGHSAILNFPNE 83
           AARAYD+ AF  RG  AILNFP E
Sbjct: 173 AARAYDKEAFRLRGSKAILNFPLE 196

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FKG1|EF104_ARATH Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1

 Score =  101 bits (251), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 44/71 (61%), Positives = 54/71 (76%)

Query: 23  RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
            YRG+RRR WGK+AAEIRDP + G R+WLGT+ TA EA RAYD+AAF  RG  AILNFP 
Sbjct: 87  HYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFPL 146

Query: 83  EGQYRSQSSSG 93
           + +  S++ SG
Sbjct: 147 DVRVTSETCSG 157

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW48|ERF5_NICSY Ethylene-responsive transcription factor 5 OS=Nicotiana sylvestris GN=ERF5 PE=2 SV=1

 Score =  100 bits (250), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 23  RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
            YRG+R+R WGKFAAEIRDP R GTR+WLGTF TA EAA+AYDRAA+  RG  AI+NFP 
Sbjct: 137 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAYKLRGSKAIVNFPL 196

Query: 83  E 83
           E
Sbjct: 197 E 197

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|Q8VY90|EF105_ARATH Ethylene-responsive transcription factor ERF105 OS=Arabidopsis thaliana GN=ERF105 PE=2 SV=1

 Score =  100 bits (248), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 43/62 (69%), Positives = 48/62 (77%)

Query: 23  RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
            YRG+RRR WGK+AAEIRDP + G R+WLGTF TA EAAR YD+AAF  RG  AILNFP 
Sbjct: 71  HYRGVRRRPWGKYAAEIRDPNKKGVRVWLGTFDTAMEAARGYDKAAFKLRGSKAILNFPL 130

Query: 83  EG 84
           E 
Sbjct: 131 EA 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
224062151	142	AP2/ERF domain-containing transcription	0.825	0.929	0.587	3e-34
224085625	143	AP2/ERF domain-containing transcription	0.825	0.923	0.547	7e-32
351721044	153	uncharacterized protein LOC100500462 [Gl	0.843	0.882	0.553	2e-30
255583196	154	Ethylene-responsive transcription factor	0.831	0.863	0.592	3e-30
356574758	134	PREDICTED: ethylene-responsive transcrip	0.756	0.902	0.493	1e-28
224107871	148	AP2/ERF domain-containing transcription	0.718	0.777	0.609	3e-28
297744133	238	unnamed protein product [Vitis vinifera]	0.837	0.563	0.481	5e-28
359807434	158	uncharacterized protein LOC100779173 [Gl	0.837	0.848	0.551	6e-28
42565130	139	ethylene-responsive transcription factor	0.743	0.856	0.541	6e-28
356530280	132	PREDICTED: ethylene-responsive transcrip	0.775	0.939	0.506	5e-27

>gi|224062151|ref|XP_002300780.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222842506|gb|EEE80053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 102/148 (68%), Gaps = 16/148 (10%)

Query: 7   GGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDR 66
           G KN +KQ      E  YRGIRRR WGKFAAEIRDPTRNGTR WLGTF TAEEAARAYDR
Sbjct: 6   GEKNTKKQEKRR--ENAYRGIRRRPWGKFAAEIRDPTRNGTRRWLGTFDTAEEAARAYDR 63

Query: 67  AAFAFRGHSAILNFPNEGQYR-SQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSS 125
           AAFAFRGH AILNFPNE Q++ + S+   +S     + +P S+ +            +SS
Sbjct: 64  AAFAFRGHLAILNFPNEYQHQETNSTMSFASSSSFSTENPLSYGNE-----------VSS 112

Query: 126 SSGKEAEVIEFEYFDNNLLEELLEARDN 153
           ++G+  EVIEFEY DN LLEELLE  D+
Sbjct: 113 TNGQ--EVIEFEYLDNKLLEELLETDDH 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085625|ref|XP_002307640.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222857089|gb|EEE94636.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  141 bits (356), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 80/146 (54%), Positives = 96/146 (65%), Gaps = 14/146 (9%)

Query: 8   GKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRA 67
           G+ N K++     E  YRGIRRR WGKFAAEIRDPT+NG R WLGT+ TAEEAARAYDRA
Sbjct: 6   GEKNTKKQEKGRGENAYRGIRRRPWGKFAAEIRDPTKNGARRWLGTYDTAEEAARAYDRA 65

Query: 68  AFAFRGHSAILNFPNEGQYRS-QSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSS 126
           AFAFRGH AILNFPNE Q++   S+   +S     + +P ++              +SS+
Sbjct: 66  AFAFRGHLAILNFPNEYQHQDPSSAMSFASSSSFSTANPVNYGHE-----------VSST 114

Query: 127 SGKEAEVIEFEYFDNNLLEELLEARD 152
            G+  EVIEFEY DN LLEELL   D
Sbjct: 115 GGQ--EVIEFEYLDNKLLEELLGTND 138

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721044|ref|NP_001238476.1| uncharacterized protein LOC100500462 [Glycine max] gi|255630387|gb|ACU15550.1| unknown [Glycine max]

 Score =  137 bits (344), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 78/141 (55%), Positives = 95/141 (67%), Gaps = 6/141 (4%)

Query: 20  SEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILN 79
            EVRYRGIRRR WGKFAAEIRDPTR GTR+WLGTF TAE+AARAYD AAF FRGH AILN
Sbjct: 13  CEVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILN 72

Query: 80  FPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSS----SSGKEAEVIE 135
           FPNE  Y+S + + S  +P +V P   S S  +  +G     ++        G   +  E
Sbjct: 73  FPNE--YQSHNPNSSLPMPLIVPPPSYSSSFTSNYSGDDNNHLVRPGEIMQGGDLDDTFE 130

Query: 136 FEYFDNNLLEELLEARDNQYW 156
            EY DN LLEELL+ +DN+++
Sbjct: 131 LEYLDNKLLEELLQMQDNRHF 151

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583196|ref|XP_002532363.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223527919|gb|EEF30006.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 83/140 (59%), Positives = 96/140 (68%), Gaps = 7/140 (5%)

Query: 1   MKASQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEA 60
           M+ASQ   KN++KQ      E RYRGIRRR WGKFAAEIRDPTRNG R WLGTF TAEEA
Sbjct: 1   MEASQ---KNSKKQSRGGSGEARYRGIRRRPWGKFAAEIRDPTRNGARRWLGTFETAEEA 57

Query: 61  ARAYDRAAFAFRGHSAILNFPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGS--A 118
           ARAYDRAAFAFRGH AILNFPNE QY SQS   S +     + S +S   +   + +  +
Sbjct: 58  ARAYDRAAFAFRGHLAILNFPNEYQYNSQSHELSFASSSTSASSSSSLMSSNSFSSAPPS 117

Query: 119 GRGVLSSSSGKEAEVIEFEY 138
               + SS+G+  EVIEFEY
Sbjct: 118 RNATIGSSAGQ--EVIEFEY 135

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574758|ref|XP_003555512.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 73/148 (49%), Positives = 88/148 (59%), Gaps = 27/148 (18%)

Query: 1   MKASQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEA 60
           M+  Q  GK   K+      EVRYRG+RRR WGK+AAEIRDP++ G+RLWLGTF TAEEA
Sbjct: 1   MEEHQKAGKLQGKE------EVRYRGVRRRPWGKYAAEIRDPSKQGSRLWLGTFDTAEEA 54

Query: 61  ARAYDRAAFAFRGHSAILNFPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGR 120
           ARAYDRAAF  RGH AILNFP+E  Y SQ        P+L +PS                
Sbjct: 55  ARAYDRAAFNLRGHLAILNFPSE--YYSQIRGSPPYPPHLATPS---------------- 96

Query: 121 GVLSSSSGKEAEVIEFEYFDNNLLEELL 148
              SSS  ++  V E    D+ +LE+LL
Sbjct: 97  ---SSSGAQQRPVFEIPCLDDKVLEDLL 121

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107871|ref|XP_002314634.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222863674|gb|EEF00805.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  130 bits (326), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 87/123 (70%), Gaps = 8/123 (6%)

Query: 21  EVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNF 80
           EVRYRG+RRR WGKFAAEIRDP+R G RLWLGTF TAEEAARAYDRAAF+ RGH AILNF
Sbjct: 17  EVRYRGVRRRPWGKFAAEIRDPSRQGARLWLGTFDTAEEAARAYDRAAFSMRGHLAILNF 76

Query: 81  PNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYFD 140
           PN+  Y SQ+   S        P  +S S   G + S  RG  SSS+G+  +VIEFEY D
Sbjct: 77  PND--YLSQAIGSSPR-----RPPVSSSSSDVGASESFQRGS-SSSAGQGKQVIEFEYLD 128

Query: 141 NNL 143
           + +
Sbjct: 129 DKI 131

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297744133|emb|CBI37103.3| unnamed protein product [Vitis vinifera]

 Score =  129 bits (324), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 82/137 (59%), Gaps = 3/137 (2%)

Query: 21  EVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNF 80
           E+RYRG+RRR WGKFAAEIRD TR G RLWLGTF+TAEEAARAYD+AA+A RGH AILNF
Sbjct: 94  EIRYRGVRRRPWGKFAAEIRDSTRQGARLWLGTFTTAEEAARAYDKAAYAMRGHLAILNF 153

Query: 81  PNEGQYR---SQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFE 137
           P E Q     + +   S     LV                      + +   + +V EFE
Sbjct: 154 PEEHQQVASPANTERTSDVHEKLVFEFEYLDDKLLEDLLETSENPDNDTVTNQNQVFEFE 213

Query: 138 YFDNNLLEELLEARDNQ 154
           Y D+ +LE+LLE  + +
Sbjct: 214 YLDDKVLEDLLECEEKE 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359807434|ref|NP_001241134.1| uncharacterized protein LOC100779173 [Glycine max] gi|255640285|gb|ACU20432.1| unknown [Glycine max]

 Score =  129 bits (323), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 100/147 (68%), Gaps = 13/147 (8%)

Query: 21  EVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNF 80
           EVRYRGIRRR WGKFAAEIRDPTR GTR+WLGTF TAE+AARAYD AAF FRGH AILNF
Sbjct: 14  EVRYRGIRRRPWGKFAAEIRDPTRKGTRIWLGTFDTAEQAARAYDAAAFHFRGHRAILNF 73

Query: 81  PNEGQYRSQSSSGSSSLPYLV----SPSPTSFSDAAGGNGSAGRGVLSSSSGK------- 129
           PNE  Y+S + + S  +P  V    S S +S +    G+ +    V  + SG+       
Sbjct: 74  PNE--YQSHNPNSSLPMPLAVSAPPSYSSSSSTSNYSGDDNNNHLVRPAFSGEIMQGGDH 131

Query: 130 EAEVIEFEYFDNNLLEELLEARDNQYW 156
           + +  E EYFDN LLEELL+ +DN+++
Sbjct: 132 DDDTFELEYFDNKLLEELLQMQDNRHF 158

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42565130|ref|NP_188964.2| ethylene-responsive transcription factor ERF098 [Arabidopsis thaliana] gi|75274087|sp|Q9LTC5.1|ERF98_ARATH RecName: Full=Ethylene-responsive transcription factor ERF098 gi|7939533|dbj|BAA95736.1| Nicotiana EREBP-3-like protein [Arabidopsis thaliana] gi|34221729|emb|CAE45639.1| putative ethylene responsive element binding protein [Arabidopsis thaliana] gi|332643216|gb|AEE76737.1| ethylene-responsive transcription factor ERF098 [Arabidopsis thaliana]

 Score =  128 bits (322), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 71/131 (54%), Positives = 86/131 (65%), Gaps = 12/131 (9%)

Query: 20  SEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILN 79
            + R+RG+RRR WGKFAAEIRDP+RNG RLWLGTF TAEEAARAYDRAAF  RGH AILN
Sbjct: 16  KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARAYDRAAFNLRGHLAILN 75

Query: 80  FPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGRGVLSSSSGKEAEVIEFEYF 139
           FPNE  Y  +    S   PY           ++  + S+G    + S   + EV EFEY 
Sbjct: 76  FPNE--YYPRMDDYSLRPPYA----------SSSSSSSSGSTSTNVSRQNQREVFEFEYL 123

Query: 140 DNNLLEELLEA 150
           D+ +LEELL++
Sbjct: 124 DDKVLEELLDS 134

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530280|ref|XP_003533710.1| PREDICTED: ethylene-responsive transcription factor ERF098-like [Glycine max]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 76/150 (50%), Positives = 91/150 (60%), Gaps = 26/150 (17%)

Query: 1   MKASQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEA 60
           M+ +  G ++ EK+      EV+YRG+RRR WGKF AEIRDPT+   R WLGTF TAEEA
Sbjct: 1   MEEAHKGDEDKEKRGE----EVKYRGVRRRPWGKFGAEIRDPTKPTGRQWLGTFDTAEEA 56

Query: 61  ARAYDRAAFAFRGHSAILNFPNEGQYRSQSSSGSSSLPYLVSPSPTSFSDAAGGNGSAGR 120
           ARAYDRAA   RG  AILNFP+E           S LP+ VS +PTS       NG    
Sbjct: 57  ARAYDRAAIELRGVLAILNFPDECY---------SQLPF-VSSNPTS-----TANG---- 97

Query: 121 GVLSSSSGKEAEVIEFEYFDNNLLEELLEA 150
              SS +    EVIEFE  DN +LE+LLE+
Sbjct: 98  ---SSFAPTHKEVIEFECLDNKVLEDLLES 124

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2086213	139	TDR1 "Transcriptional Regulato	0.85	0.978	0.397	9e-22
TAIR|locus:2176511	131	AT5G43410 [Arabidopsis thalian	0.431	0.526	0.478	6.6e-21
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.381	0.458	0.508	1.1e-20
TAIR|locus:2086203	139	ESE1 "ethylene and salt induci	0.8	0.920	0.393	5.7e-20
TAIR|locus:2086223	218	ERF1 "ethylene response factor	0.431	0.316	0.549	4.8e-17
TAIR|locus:2042496	243	ERF15 "ethylene-responsive ele	0.487	0.320	0.481	4.2e-15
TAIR|locus:2129106	282	ERF6 "AT4G17490" [Arabidopsis	0.418	0.237	0.558	1.1e-14
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.818	0.539	0.320	1.8e-14
TAIR|locus:2151576	201	AT5G61590 [Arabidopsis thalian	0.475	0.378	0.435	4.9e-14
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.475	0.253	0.474	7.9e-14

TAIR|locus:2086213 TDR1 "Transcriptional Regulator of Defense Response 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
 Identities = 60/151 (39%), Positives = 75/151 (49%)

Query:     4 SQGGGKNNEKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXX 63
             S     NN+ Q      + R+RG+RRR WGKFAAEIRDP+RNG RLWLGTF T       
Sbjct:     3 SSNRSSNNQSQDD---KQARFRGVRRRPWGKFAAEIRDPSRNGARLWLGTFETAEEAARA 59

Query:    64 XXXXXXXXXGHSAILNFPNEGQYRXXXXXXXXXXXXXXXXXXXXFSDAAGGNGSAGRGVL 123
                      GH AILNFPNE   R                     S ++  +GS    V 
Sbjct:    60 YDRAAFNLRGHLAILNFPNEYYPRMDDYSLRPPYAS---------SSSSSSSGSTSTNV- 109

Query:   124 SSSSGKEAEVIEFEYFDNNLLEELLEARDNQ 154
               S   + EV EFEY D+ +LEELL++ + +
Sbjct:   110 --SRQNQREVFEFEYLDDKVLEELLDSEERK 138

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2176511 AT5G43410 [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.6e-21, Sum P(2) = 6.6e-21
 Identities = 33/69 (47%), Positives = 41/69 (59%)

Query:    15 RSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXXGH 74
             R V     +YRG+RRR WGK+AAEIRD  ++G R+WLGTF T                G 
Sbjct:     6 RGVGAEHGKYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEEAARAYDQAAYSMRGQ 65

Query:    75 SAILNFPNE 83
             +AILNFP+E
Sbjct:    66 AAILNFPHE 74

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 173 (66.0 bits), Expect = 1.1e-20, Sum P(2) = 1.1e-20
 Identities = 31/61 (50%), Positives = 39/61 (63%)

Query:    23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXXGHSAILNFPN 82
             +YRG+RRR WGK+AAEIRD  ++G R+WLGTF T                G +AILNFP+
Sbjct:    19 KYRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFPH 78

Query:    83 E 83
             E
Sbjct:    79 E 79

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2086203 ESE1 "ethylene and salt inducible 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 57/145 (39%), Positives = 74/145 (51%)

Query:    12 EKQRSVSVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXX 71
             E+  S + +E++YRG+R+R WGK+AAEIRD  R+G R+WLGTF+T               
Sbjct:     2 ERIESYNTNEMKYRGVRKRPWGKYAAEIRDSARHGARVWLGTFNTAEDAARAYDRAAFGM 61

Query:    72 XGHSAILNFPNEGQYRXXXXXXXXXXXXXXXXXXXXFSDAAGGNGSAGRGVLSSSSGKEA 131
              G  AILNFP+E  Y+                    +    GG G  GR           
Sbjct:    62 RGQRAILNFPHE--YQMMKDGPNGSHENAVASSSSGYR--GGGGGDDGR----------- 106

Query:   132 EVIEFEYFDNNLLEELLE--ARDNQ 154
             EVIEFEY D++LLEELL+   R NQ
Sbjct:   107 EVIEFEYLDDSLLEELLDYGERSNQ 131

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2086223 ERF1 "ethylene response factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 4.8e-17, Sum P(2) = 4.8e-17
 Identities = 39/71 (54%), Positives = 43/71 (60%)

Query:    15 RSVSV--SEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXX 72
             +SVS   SE  YRG+RRR WGKFAAEIRD TRNG R+WLGTF +                
Sbjct:    71 KSVSSRKSEKSYRGVRRRPWGKFAAEIRDSTRNGIRVWLGTFESAEEAALAYDQAAFSMR 130

Query:    73 GHSAILNFPNE 83
             G SAILNF  E
Sbjct:   131 GSSAILNFSAE 141

GO:0003677 "DNA binding" evidence=IEA;IDA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0006952 "defense response" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=TAS

GO:0009873 "ethylene mediated signaling pathway" evidence=IGI;TAS

TAIR|locus:2042496 ERF15 "ethylene-responsive element binding factor 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/79 (48%), Positives = 45/79 (56%)

Query:     6 GGGKNNEKQRSVSVSEVR-YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXX 64
             G   N+E++  V + E R YRG+R+R WGKFAAEIRD TRNG R+WLGTF          
Sbjct:    67 GDVSNSEEEEKVGIDEERSYRGVRKRPWGKFAAEIRDSTRNGIRVWLGTFDKAEEAALAY 126

Query:    65 XXXXXXXXGHSAILNFPNE 83
                     G  A LNFP E
Sbjct:   127 DQAAFATKGSLATLNFPVE 145

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009507 "chloroplast" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2129106 ERF6 "AT4G17490" [Arabidopsis thaliana (taxid:3702)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 38/68 (55%), Positives = 41/68 (60%)

Query:    17 VSVSEVR-YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXXGHS 75
             V+  E R YRG+R R WGKFAAEIRDPTR GTR+WLGTF T                G  
Sbjct:   129 VAAEEKRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSK 188

Query:    76 AILNFPNE 83
             AILNFP E
Sbjct:   189 AILNFPLE 196

GO:0003677 "DNA binding" evidence=ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0000302 "response to reactive oxygen species" evidence=IEP

GO:0005515 "protein binding" evidence=IPI

GO:0009644 "response to high light intensity" evidence=IMP

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 42/131 (32%), Positives = 56/131 (42%)

Query:    18 SVSEVRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXXGHSAI 77
             +V    YRG+R+R WGKFAAEIRDP +NG R+WLGTF T                G  A+
Sbjct:   111 AVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRAL 170

Query:    78 LNFPNEGQYRXXXXXXXXXXXXXXXXXXXXFSDAAGGNGSAGRGVLSSSSGKEAEVIEFE 137
             LNFP                           S ++  NG   R   + +   E   ++ E
Sbjct:   171 LNFPLRVNSGEPDPVRITSKRSSSSSSSSSSSTSSSENGKLKRRRKAENLTSEVVQVKCE 230

Query:   138 YFDNNLLEELL 148
               D   ++ELL
Sbjct:   231 VGDETRVDELL 241

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2151576 AT5G61590 [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 4.9e-14, P = 4.9e-14
 Identities = 34/78 (43%), Positives = 47/78 (60%)

Query:    11 NEKQRSVSVSEVR-YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXX 69
             + ++++    E R YRG+RRR WGKFAAEIRDP + G+R+WLGTF +             
Sbjct:    93 SNRKKTKRFEETRHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDIDAARAYDYAAF 152

Query:    70 XXXGHSAILNFP-NEGQY 86
                G  A+LNFP + G+Y
Sbjct:   153 KLRGRKAVLNFPLDAGKY 170

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 181 (68.8 bits), Expect = 7.9e-14, P = 7.9e-14
 Identities = 37/78 (47%), Positives = 47/78 (60%)

Query:    12 EKQRSVSVSEVR-YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXX 70
             E  + VS  E + YRG+R+R WGKFAAEIRDP + G+R+WLGTF T              
Sbjct:   143 EVTKPVSEEEKKHYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFR 202

Query:    71 XXGHSAILNFPNE-GQYR 87
               G  AILNFP E G+++
Sbjct:   203 LRGSKAILNFPLEVGKWK 220

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LTC5	ERF98_ARATH	No assigned EC number	0.5419	0.7437	0.8561	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: ERF17 AP2/ERF domain-containing transcription factor (114 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	1e-30
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-28
pfam00847	53	pfam00847, AP2, AP2 domain	5e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  105 bits (263), Expect = 1e-30
 Identities = 45/60 (75%), Positives = 52/60 (86%), Gaps = 1/60 (1%)

Query: 23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
          +YRG+R+R WGK+ AEIRDP++ G R+WLGTF TAEEAARAYDRAAF FRG SA LNFPN
Sbjct: 1  KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPN 59

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score = 99.7 bits (249), Expect = 2e-28
 Identities = 42/60 (70%), Positives = 49/60 (81%), Gaps = 1/60 (1%)

Query: 23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
          +YRG+R+R WGK+ AEIRDP   G R+WLGTF TAEEAARAYDRAA   RG SA+LNFP+
Sbjct: 2  KYRGVRQRPWGKWVAEIRDP-SGGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPD 60

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 54.6 bits (132), Expect = 5e-11
 Identities = 26/53 (49%), Positives = 31/53 (58%), Gaps = 3/53 (5%)

Query: 23 RYRGIRRR-AWGKFAAEIRDP-TRNGTRLWLGTFSTAEEAARAYDRAAFAFRG 73
           Y+G+R    WG++ AEIRDP  +   R  LGTF T EEAARA   A    RG
Sbjct: 2  GYKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.85
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.84
PHA00280	121	putative NHN endonuclease	99.67
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.35
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	83.3

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.85  E-value=1.8e-21  Score=130.24  Aligned_cols=61  Identities=69%  Similarity=1.275  Sum_probs=56.7

Q ss_pred             CceeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCC
Q 031402           22 VRYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNE   83 (160)
Q Consensus        22 S~yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~G~~a~~NFp~~   83 (160)
                      |+|+||+++++|||+|+|+++. .|+++|||+|+|+|||+.|||.+++.++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999999999999999743 389999999999999999999999999999999999964

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.84  E-value=8.3e-21  Score=128.50  Aligned_cols=63  Identities=71%  Similarity=1.227  Sum_probs=58.5

Q ss_pred             ceeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCccC
Q 031402           23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEGQY   86 (160)
Q Consensus        23 ~yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~G~~a~~NFp~~~~~   86 (160)
                      +|+||+++++|||+|+|+++. +|+.+|||+|+|+||||.|||.++.+++|.++.+|||.+.+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            599999999999999999864 589999999999999999999999999999999999987663

>PHA00280 putative NHN endonuclease

Probab=99.67  E-value=1.3e-16  Score=121.24  Aligned_cols=66  Identities=12%  Similarity=0.126  Sum_probs=60.0

Q ss_pred             CCCccCCCCCCCCCCceeeeEECCC-CeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhcCCCCC
Q 031402            8 GKNNEKQRSVSVSEVRYRGIRRRAW-GKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAI   77 (160)
Q Consensus         8 ~~n~~n~~~~~~~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~G~~a~   77 (160)
                      .+|.+|++.+++|+|+|+||++.+. |||+|+|..   +||+++||.|+++|+|+.||+ ++.++||+||.
T Consensus        53 ~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         53 KENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             HHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            4688999999999999999997655 999999995   899999999999999999997 77899999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.35  E-value=2.2e-12  Score=84.17  Aligned_cols=53  Identities=34%  Similarity=0.500  Sum_probs=46.3

Q ss_pred             CceeeeEECCC-CeEEEEEecCCCCC--eEeeccCCCCHHHHHHHHHHHHHhhcCC
Q 031402           22 VRYRGIRRRAW-GKFAAEIRDPTRNG--TRLWLGTFSTAEEAARAYDRAAFAFRGH   74 (160)
Q Consensus        22 S~yrGV~~r~~-Gkw~A~I~~~~~~g--kri~LGtF~t~eeAA~AYd~aa~~~~G~   74 (160)
                      |+|+||++.+. ++|+|+|+++..+|  ++++||.|++++||++||+.++..++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            68999997764 99999999854443  9999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=83.30  E-value=4.5  Score=25.12  Aligned_cols=39  Identities=15%  Similarity=0.173  Sum_probs=28.3

Q ss_pred             eEEEEEe-cCCCCC--eEeeccCCCCHHHHHHHHHHHHHhhc
Q 031402           34 KFAAEIR-DPTRNG--TRLWLGTFSTAEEAARAYDRAAFAFR   72 (160)
Q Consensus        34 kw~A~I~-~~~~~g--kri~LGtF~t~eeAA~AYd~aa~~~~   72 (160)
                      +|..+|. .-...|  ++++-+-|.|..||..+..++...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5778883 222344  56777899999999999988776654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		1e-12
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		1e-12

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 36/58 (62%)
Query: 24 YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXXGHSAILNFP 81
          YRG+R+R WGKFAAEIRDP +NG R+WLGTF T                G  A+LNFP
Sbjct: 6  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 63

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score = 68.6 bits (166), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 31/58 (53%), Positives = 36/58 (62%)
Query: 24 YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTXXXXXXXXXXXXXXXXGHSAILNFP 81
          YRG+R+R WGKFAAEIRDP +NG R+WLGTF T                G  A+LNFP
Sbjct: 3  YRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
1gcc_A	63	Ethylene responsive element binding factor 1; tran	4e-37

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  120 bits (304), Expect = 4e-37
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
           YRG+R+R WGKFAAEIRDP +NG R+WLGTF TAE+AA AYDRAAF  RG  A+LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 83 E 83
           
Sbjct: 62 R 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.93
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	93.05
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	83.25
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.77

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.93  E-value=7.7e-27  Score=157.86  Aligned_cols=62  Identities=69%  Similarity=1.227  Sum_probs=59.0

Q ss_pred             ceeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 031402           23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEG   84 (160)
Q Consensus        23 ~yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~G~~a~~NFp~~~   84 (160)
                      +|+||++++||||+|+|+++..+|+++|||||+|+||||+|||.|++.++|..+.+|||.++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            79999999999999999998777899999999999999999999999999999999999763

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=93.05  E-value=0.072  Score=36.77  Aligned_cols=28  Identities=18%  Similarity=0.183  Sum_probs=22.4

Q ss_pred             CCCCceeeeEECCC-CeEEEEEecCCCCCeEe
Q 031402           19 VSEVRYRGIRRRAW-GKFAAEIRDPTRNGTRL   49 (160)
Q Consensus        19 ~~~S~yrGV~~r~~-Gkw~A~I~~~~~~gkri   49 (160)
                      ...|+|+||+|.+. +.|.|+-.+   +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            35789999998877 999999997   46654

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=83.25  E-value=0.17  Score=38.66  Aligned_cols=38  Identities=5%  Similarity=-0.103  Sum_probs=27.9

Q ss_pred             eeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHH
Q 031402           24 YRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYD   65 (160)
Q Consensus        24 yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd   65 (160)
                      ++||.+...++|.+.|..   + +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            356644223568888885   4 5678999999999999963

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.77  E-value=2.1  Score=34.23  Aligned_cols=41  Identities=20%  Similarity=0.191  Sum_probs=31.0

Q ss_pred             eeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhh
Q 031402           26 GIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAF   71 (160)
Q Consensus        26 GV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~   71 (160)
                      ||+.++.|.|..++.   .+|+++.+|.  |..||..+..++...+
T Consensus        15 ~v~~~~~g~~~~r~~---~~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           15 NLYIRNNGYYCYRDP---RTGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TEEEETTTEEEEECT---TTCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEee---cCCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            588788899988765   3688999996  8888877766554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	8e-31

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  104 bits (260), Expect = 8e-31
 Identities = 43/61 (70%), Positives = 49/61 (80%)

Query: 23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPN 82
           YRG+R+R WGKFAAEIRDP +NG R+WLGTF TAE+AA AYDRAAF  RG  A+LNFP 
Sbjct: 2  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 83 E 83
           
Sbjct: 62 R 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.93

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.93  E-value=3.3e-27  Score=158.38  Aligned_cols=62  Identities=69%  Similarity=1.227  Sum_probs=59.0

Q ss_pred             ceeeeEECCCCeEEEEEecCCCCCeEeeccCCCCHHHHHHHHHHHHHhhcCCCCCCCCCCCc
Q 031402           23 RYRGIRRRAWGKFAAEIRDPTRNGTRLWLGTFSTAEEAARAYDRAAFAFRGHSAILNFPNEG   84 (160)
Q Consensus        23 ~yrGV~~r~~Gkw~A~I~~~~~~gkri~LGtF~t~eeAA~AYd~aa~~~~G~~a~~NFp~~~   84 (160)
                      +||||+++++|||.|+|+++..+++++|||+|+|+||||+|||.|++.++|.++.+|||.++
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            59999999999999999998888999999999999999999999999999999999999763