Citrus Sinensis ID: 031408

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHccccccEEEEccccccccEEEEEEEccccccccccccEEEEEEEccccccccccccccccccccccccccccEEEEccccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHccccccEEEEccccccEEEEEEEEEEEEccccccEccEEEEEEEccccccccccEEEEccccccccEccccEEccHHHcccccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHcHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
msgggiargrLTEERKAwrknhphgfvakpetkdgsvnLMIWECiipgktgtdweggyfpltlyfsedypskppkckfpqgffhpnvypsgtVCLSIlnedngwrpaiTVKQILVGIQDlldqpnpadpaqtdgyqlfiQDPAEYKRRVRQQakqyppvi
Flexible Loop (DISEMBL)
msgggiargrlteerkawrknhphgfvakpetkdgsvnLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRqqakqyppvi
Low Complexity Region (SEG)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI
Disordered region (IsUnstruct)
**********************************GSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD************YQLFI*********************
Disordered Region (DISOPRED)
******A***LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP**
Disordered Region (DISEMBL)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYK**************
Disordered Region (DISPRO)
*******RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q42551	160	SUMO-conjugating enzyme S	yes	no	0.987	0.987	0.836	2e-77
Q9NGP4	159	Sumo-conjugating enzyme u	yes	no	0.968	0.974	0.615	2e-56
Q9W6H5	158	SUMO-conjugating enzyme U	yes	no	0.968	0.981	0.641	1e-55
Q28CQ4	158	SUMO-conjugating enzyme U	yes	no	0.968	0.981	0.641	1e-55
P63282	158	SUMO-conjugating enzyme U	N/A	no	0.968	0.981	0.641	1e-55
Q2EF73	158	SUMO-conjugating enzyme U	N/A	no	0.968	0.981	0.641	1e-55
P63281	158	SUMO-conjugating enzyme U	yes	no	0.968	0.981	0.641	1e-55
P63280	158	SUMO-conjugating enzyme U	yes	no	0.968	0.981	0.641	1e-55
P63279	158	SUMO-conjugating enzyme U	yes	no	0.968	0.981	0.641	1e-55
P63283	158	SUMO-conjugating enzyme U	yes	no	0.968	0.981	0.641	1e-55

>sp|Q42551|SCE1_ARATH SUMO-conjugating enzyme SCE1 OS=Arabidopsis thaliana GN=SCE1 PE=1 SV=1

 Score =  287 bits (735), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 133/159 (83%), Positives = 145/159 (91%), Gaps = 1/159 (0%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
             GIARGRL EERK+WRKNHPHGFVAKPET +DG+VNLM+W C IPGK GTDWEGG+FPL
Sbjct: 2   ASGIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPL 61

Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
           T++FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQILVGIQDLL
Sbjct: 62  TMHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLL 121

Query: 122 DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           D PNPADPAQTDGY LF QDP EYK+RV+ Q+KQYP ++
Sbjct: 122 DTPNPADPAQTDGYHLFCQDPVEYKKRVKLQSKQYPALV 160

SUMO-conjugating enzyme that accepts the SUMO proteins from the E1 SUMO-activating heterodimer SAE1/SAE2 and catalyzes its covalent attachment to other proteins with the E3 SUMO ligases SIZ1 and MMS21. Associates with SIZ1 for sumoylation of the transcription factor GTE3.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9NGP4|UBC9_DICDI Sumo-conjugating enzyme ubc9 OS=Dictyostelium discoideum GN=ubc9 PE=3 SV=1

 Score =  218 bits (554), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 123/156 (78%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GI+  RL+EERK WR++HP+GF A+P T  DGS+NL +W C IPGKT T+WEGG +PL 
Sbjct: 2   AGISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLI 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE+  W+P++T+K +L+GIQDLLD
Sbjct: 62  MEFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLD 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
            PNP  PAQ     LF+ +  EY ++V+ Q+K YPP
Sbjct: 122 NPNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVYPP 157

Accepts the ubiquitin-like protein sumo from the E1 complex and catalyzes its covalent attachment to other proteins with the help of an E3 ligase.

Dictyostelium discoideum (taxid: 44689)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9W6H5|UBC9A_DANRE SUMO-conjugating enzyme UBC9-A OS=Danio rerio GN=ube2ia PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPMKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFSP 157

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation (By similarity). Mediates nuclear localization of vsx1. Required for progression through mitosis during organogenesis.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q28CQ4|UBC9_XENTR SUMO-conjugating enzyme UBC9 OS=Xenopus tropicalis GN=ube2i PE=2 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus tropicalis (taxid: 8364)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63282|UBC9_XENLA SUMO-conjugating enzyme UBC9 OS=Xenopus laevis GN=ube2i PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins sumo1, sumo2 and sumo3 from the uble1a-uble1b E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as ranbp2 or cbx4. Essential for nuclear architecture and chromosome segregation.

Xenopus laevis (taxid: 8355)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q2EF73|UBC9_SPETR SUMO-conjugating enzyme UBC9 OS=Spermophilus tridecemlineatus GN=UBE2I PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Spermophilus tridecemlineatus (taxid: 43179)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63281|UBC9_RAT SUMO-conjugating enzyme UBC9 OS=Rattus norvegicus GN=Ube2i PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture and chromosome segregation (By similarity). Necessary for sumoylation of FOXL2 and KAT5.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63280|UBC9_MOUSE SUMO-conjugating enzyme UBC9 OS=Mus musculus GN=Ube2i PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Essential for nuclear architecture, chromosome segregation and embryonic viability. Necessary for sumoylation of FOXL2 and KAT5.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63279|UBC9_HUMAN SUMO-conjugating enzyme UBC9 OS=Homo sapiens GN=UBE2I PE=1 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins SUMO1, SUMO2, SUMO3 and SUMO4 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Can catalyze the formation of poly-SUMO chains. Necessary for sumoylation of FOXL2 and KAT5. Essential for nuclear architecture and chromosome segregation.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|P63283|UBC9_CHICK SUMO-conjugating enzyme UBC9 OS=Gallus gallus GN=UBE2I PE=2 SV=1

 Score =  215 bits (547), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

Accepts the ubiquitin-like proteins SUMO1, SUMO2 and SUMO3 from the UBLE1A-UBLE1B E1 complex and catalyzes their covalent attachment to other proteins with the help of an E3 ligase such as RANBP2 or CBX4. Essential for nuclear architecture and chromosome segregation.

Gallus gallus (taxid: 9031)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
147790674	160	hypothetical protein VITISV_001138 [Viti	0.981	0.981	0.924	7e-82
225458690	160	PREDICTED: SUMO-conjugating enzyme SCE1	0.981	0.981	0.917	3e-81
326508977	161	predicted protein [Hordeum vulgare subsp	1.0	0.993	0.894	4e-81
357147197	161	PREDICTED: SUMO-conjugating enzyme SCE1-	1.0	0.993	0.906	5e-81
351726411	160	uncharacterized protein LOC100500268 [Gl	0.981	0.981	0.911	5e-81
192910932	160	ubiquitin-conjugating enzyme [Elaeis gui	0.981	0.981	0.911	1e-80
115450403	160	Os03g0123100 [Oryza sativa Japonica Grou	0.981	0.981	0.911	1e-80
110628146	161	putative E2 SUMO conjugating enzyme [Tri	1.0	0.993	0.888	3e-80
224063487	161	predicted protein [Populus trichocarpa]	1.0	0.993	0.881	4e-80
224094899	161	predicted protein [Populus trichocarpa]	1.0	0.993	0.869	5e-80

>gi|147790674|emb|CAN61018.1| hypothetical protein VITISV_001138 [Vitis vinifera]

 Score =  308 bits (788), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 146/158 (92%), Positives = 152/158 (96%), Gaps = 1/158 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           QPNPADPAQTDGYQLFIQ+PAEYKRRVRQQAKQYPP++
Sbjct: 123 QPNPADPAQTDGYQLFIQEPAEYKRRVRQQAKQYPPLV 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458690|ref|XP_002284949.1| PREDICTED: SUMO-conjugating enzyme SCE1 [Vitis vinifera] gi|302142282|emb|CBI19485.3| unnamed protein product [Vitis vinifera]

 Score =  305 bits (782), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 145/158 (91%), Positives = 151/158 (95%), Gaps = 1/158 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETGPDGSVNLMVWHCTIPGKAGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           QPN ADPAQTDGYQLFIQ+PAEYKRRVRQQAKQYPP++
Sbjct: 123 QPNAADPAQTDGYQLFIQEPAEYKRRVRQQAKQYPPLV 160

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508977|dbj|BAJ86881.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 144/161 (89%), Positives = 151/161 (93%), Gaps = 1/161 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLMIW C IPGK GTDWE GY+
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPETMADGSVNLMIWNCTIPGKQGTDWESGYY 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQD
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           LLDQPNPADPAQTDGY LFIQDPAEY+RR+R QAKQYP ++
Sbjct: 121 LLDQPNPADPAQTDGYHLFIQDPAEYRRRIRLQAKQYPALV 161

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357147197|ref|XP_003574257.1| PREDICTED: SUMO-conjugating enzyme SCE1-like isoform 1 [Brachypodium distachyon]

 Score =  305 bits (780), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 146/161 (90%), Positives = 150/161 (93%), Gaps = 1/161 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDWEGGYF
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPETVADGSVNLMVWHCTIPGKQGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL FSEDYPSKPPKCKFPQ FFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQD
Sbjct: 61  PLTLQFSEDYPSKPPKCKFPQNFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           LLDQPNPADPAQTDGY LFIQDPAEYK+RVR QAKQYP +I
Sbjct: 121 LLDQPNPADPAQTDGYHLFIQDPAEYKKRVRLQAKQYPALI 161

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726411|ref|NP_001235590.1| uncharacterized protein LOC100500268 [Glycine max] gi|356511865|ref|XP_003524642.1| PREDICTED: SUMO-conjugating enzyme SCE1-like [Glycine max] gi|255629881|gb|ACU15291.1| unknown [Glycine max]

 Score =  305 bits (780), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 152/158 (96%), Gaps = 1/158 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRLTEERK+WRKNHPHGFVAKPET  DG+VNLM+W C IPGKTGTDWEGGYFPLT
Sbjct: 3   GGIARGRLTEERKSWRKNHPHGFVAKPETLPDGTVNLMVWHCTIPGKTGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           QPNPADPAQT+GY LFIQD AEYKRRVRQQAKQYPP++
Sbjct: 123 QPNPADPAQTEGYHLFIQDAAEYKRRVRQQAKQYPPLL 160

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910932|gb|ACF06574.1| ubiquitin-conjugating enzyme [Elaeis guineensis]

 Score =  304 bits (778), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 150/158 (94%), Gaps = 1/158 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DGSVNLM+W C IPGK GTDW+GGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETLSDGSVNLMVWHCTIPGKQGTDWDGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFP GFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPPGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           QPNPADPAQTDGY LFIQDPAEYKRRVRQQAKQYPP++
Sbjct: 123 QPNPADPAQTDGYHLFIQDPAEYKRRVRQQAKQYPPLV 160

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115450403|ref|NP_001048802.1| Os03g0123100 [Oryza sativa Japonica Group] gi|25446690|gb|AAN74837.1| Putative ubiquitin-conjugating enzyme [Oryza sativa Japonica Group] gi|108705922|gb|ABF93717.1| Ubiquitin-conjugating enzyme E2 I, putative, expressed [Oryza sativa Japonica Group] gi|113547273|dbj|BAF10716.1| Os03g0123100 [Oryza sativa Japonica Group] gi|125542190|gb|EAY88329.1| hypothetical protein OsI_09788 [Oryza sativa Indica Group] gi|125584745|gb|EAZ25409.1| hypothetical protein OsJ_09225 [Oryza sativa Japonica Group] gi|215692765|dbj|BAG88233.1| unnamed protein product [Oryza sativa Japonica Group] gi|215734816|dbj|BAG95538.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  303 bits (777), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 144/158 (91%), Positives = 149/158 (94%), Gaps = 1/158 (0%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLMIW C IPGK GTDWEGGYFPLT
Sbjct: 3   GGIARGRLAEERKAWRKNHPHGFVAKPETLADGTVNLMIWHCTIPGKQGTDWEGGYFPLT 62

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQDLLD
Sbjct: 63  LHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQDLLD 122

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           QPNPADPAQTDGY LFIQDP EYKRRVR QAKQYPP++
Sbjct: 123 QPNPADPAQTDGYHLFIQDPTEYKRRVRLQAKQYPPIV 160

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110628146|gb|ABG79538.1| putative E2 SUMO conjugating enzyme [Triticum durum]

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 143/161 (88%), Positives = 149/161 (92%), Gaps = 1/161 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MS GGIARGRL EERKAWRKNHPHGFVAKPET  DG+VNLM+W C IPGK GTDWEGGYF
Sbjct: 1   MSSGGIARGRLAEERKAWRKNHPHGFVAKPETLGDGTVNLMVWHCTIPGKQGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL+FSEDYPSKPPKCKFP  FFHPNVYPSGTVCLSILNED+GWRPAITVKQILVGIQD
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPTNFFHPNVYPSGTVCLSILNEDSGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           LLDQPNPADPAQTDGY LFIQDPAEYKRRVR QAKQYP ++
Sbjct: 121 LLDQPNPADPAQTDGYHLFIQDPAEYKRRVRAQAKQYPALV 161

Source: Triticum durum

Species: Triticum durum

Genus: Triticum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063487|ref|XP_002301168.1| predicted protein [Populus trichocarpa] gi|118485912|gb|ABK94802.1| unknown [Populus trichocarpa] gi|118488765|gb|ABK96193.1| unknown [Populus trichocarpa] gi|222842894|gb|EEE80441.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (773), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 142/161 (88%), Positives = 153/161 (95%), Gaps = 1/161 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERKAWRKNHPHGFVAKP+   DGS++LM+W+CIIPGK GTDWEGGYF
Sbjct: 1   MSGGGIARGRLAEERKAWRKNHPHGFVAKPDNAPDGSLDLMMWKCIIPGKPGTDWEGGYF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PLTL+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQIL+GIQD
Sbjct: 61  PLTLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILIGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           LLDQPNP+DPAQTDGYQLF+QDPAEY+RRVRQQAK YPP +
Sbjct: 121 LLDQPNPSDPAQTDGYQLFVQDPAEYRRRVRQQAKLYPPTL 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224094899|ref|XP_002334778.1| predicted protein [Populus trichocarpa] gi|224146872|ref|XP_002336358.1| predicted protein [Populus trichocarpa] gi|118487611|gb|ABK95631.1| unknown [Populus trichocarpa] gi|222834784|gb|EEE73247.1| predicted protein [Populus trichocarpa] gi|222874608|gb|EEF11739.1| predicted protein [Populus trichocarpa]

 Score =  301 bits (771), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 140/161 (86%), Positives = 154/161 (95%), Gaps = 1/161 (0%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPE-TKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSGGGIARGRL EERK+WRKNHPHGFVAKP+  +DGS++LM+W+CIIPGK GTDWEGG+F
Sbjct: 1   MSGGGIARGRLAEERKSWRKNHPHGFVAKPDNAQDGSLDLMVWKCIIPGKPGTDWEGGFF 60

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           PL+L+FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQILVGIQD
Sbjct: 61  PLSLHFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQD 120

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           LLDQPNP+DPAQTDGYQLF+QDP EY+RRVRQQAKQYPP +
Sbjct: 121 LLDQPNPSDPAQTDGYQLFVQDPTEYRRRVRQQAKQYPPAL 161

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2095838	160	SCE1 "sumo conjugation enzyme	0.975	0.975	0.847	2.1e-75
DICTYBASE|DDB_G0287693	159	ubc9 "SUMO-conjugating enzyme	0.962	0.968	0.619	9.9e-55
UNIPROTKB|F1P5D0	162	UBE2I "SUMO-conjugating enzyme	0.962	0.950	0.645	2.1e-54
UNIPROTKB|P63283	158	UBE2I "SUMO-conjugating enzyme	0.962	0.974	0.645	2.1e-54
UNIPROTKB|A6H744	158	UBE2I "Uncharacterized protein	0.962	0.974	0.645	2.1e-54
UNIPROTKB|P63279	158	UBE2I "SUMO-conjugating enzyme	0.962	0.974	0.645	2.1e-54
UNIPROTKB|I3LSZ1	158	UBE2I "Uncharacterized protein	0.962	0.974	0.645	2.1e-54
UNIPROTKB|P63282	158	ube2i "SUMO-conjugating enzyme	0.962	0.974	0.645	2.1e-54
MGI|MGI:107365	158	Ube2i "ubiquitin-conjugating e	0.962	0.974	0.645	2.1e-54
RGD|3926	158	Ube2i "ubiquitin-conjugating e	0.962	0.974	0.645	2.1e-54

TAIR|locus:2095838 SCE1 "sumo conjugation enzyme 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 760 (272.6 bits), Expect = 2.1e-75, P = 2.1e-75
 Identities = 133/157 (84%), Positives = 145/157 (92%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKPET-KDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIARGRL EERK+WRKNHPHGFVAKPET +DG+VNLM+W C IPGK GTDWEGG+FPLT+
Sbjct:     4 GIARGRLAEERKSWRKNHPHGFVAKPETGQDGTVNLMVWHCTIPGKAGTDWEGGFFPLTM 63

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
             +FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED GWRPAITVKQILVGIQDLLD 
Sbjct:    64 HFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDYGWRPAITVKQILVGIQDLLDT 123

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
             PNPADPAQTDGY LF QDP EYK+RV+ Q+KQYP ++
Sbjct:   124 PNPADPAQTDGYHLFCQDPVEYKKRVKLQSKQYPALV 160

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0016925 "protein sumoylation" evidence=IDA

DICTYBASE|DDB_G0287693 ubc9 "SUMO-conjugating enzyme UBC9" [Dictyostelium discoideum (taxid:44689)]

 Score = 565 (203.9 bits), Expect = 9.9e-55, P = 9.9e-55
 Identities = 96/155 (61%), Positives = 123/155 (79%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GI+  RL+EERK WR++HP+GF A+P T  DGS+NL +W C IPGKT T+WEGG +PL +
Sbjct:     3 GISSARLSEERKNWRRDHPYGFFARPSTNTDGSLNLYVWNCGIPGKTKTNWEGGVYPLIM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F+EDYPSKPPKC+FP+ FFHPNVYPSGTVCLSILNE+  W+P++T+K +L+GIQDLLD 
Sbjct:    63 EFTEDYPSKPPKCRFPKDFFHPNVYPSGTVCLSILNEEADWKPSVTIKTVLLGIQDLLDN 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PNP  PAQ     LF+ +  EY ++V+ Q+K YPP
Sbjct:   123 PNPKSPAQQLPIHLFLTNKEEYDKKVKAQSKVYPP 157

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

UNIPROTKB|F1P5D0 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     7 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 66

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    67 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 126

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   127 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 161

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

UNIPROTKB|P63283 UBE2I "SUMO-conjugating enzyme UBC9" [Gallus gallus (taxid:9031)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0019789 "SUMO ligase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|A6H744 UBE2I "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|P63279 UBE2I "SUMO-conjugating enzyme UBC9" [Homo sapiens (taxid:9606)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0005524 "ATP binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0051301 "cell division" evidence=IEA

GO:0001650 "fibrillar center" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=IEA

GO:0030425 "dendrite" evidence=IEA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IEA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0043425 "bHLH transcription factor binding" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0016925 "protein sumoylation" evidence=IEA;IDA

GO:0019899 "enzyme binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0016605 "PML body" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0071535 "RING-like zinc finger domain binding" evidence=IPI

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0000795 "synaptonemal complex" evidence=TAS

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0019789 "SUMO ligase activity" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IMP

UNIPROTKB|I3LSZ1 UBE2I "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA

GO:0043398 "HLH domain binding" evidence=IEA

GO:0019899 "enzyme binding" evidence=IEA

GO:0016605 "PML body" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=IEA

UNIPROTKB|P63282 ube2i "SUMO-conjugating enzyme UBC9" [Xenopus laevis (taxid:8355)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:107365 Ube2i "ubiquitin-conjugating enzyme E2I" [Mus musculus (taxid:10090)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;IMP

GO:0000166 "nucleotide binding" evidence=IEA

GO:0001650 "fibrillar center" evidence=ISO

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISO

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0010469 "regulation of receptor activity" evidence=ISO

GO:0016567 "protein ubiquitination" evidence=ISO

GO:0016604 "nuclear body" evidence=ISO;IDA

GO:0016605 "PML body" evidence=ISO

GO:0016874 "ligase activity" evidence=IEA

GO:0016881 "acid-amino acid ligase activity" evidence=IEA

GO:0016925 "protein sumoylation" evidence=ISO

GO:0019048 "virus-host interaction" evidence=IEA

GO:0019789 "SUMO ligase activity" evidence=ISO

GO:0019899 "enzyme binding" evidence=ISO

GO:0030425 "dendrite" evidence=ISO

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=ISO

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043398 "HLH domain binding" evidence=IPI

GO:0043425 "bHLH transcription factor binding" evidence=ISO

GO:0045202 "synapse" evidence=ISO

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=ISO

GO:0051301 "cell division" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=ISO

RGD|3926 Ube2i "ubiquitin-conjugating enzyme E2I" [Rattus norvegicus (taxid:10116)]

 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 100/155 (64%), Positives = 120/155 (77%)

Query:     5 GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct:     3 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 62

Query:    64 YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
              F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct:    63 LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNE 122

Query:   124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
             PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct:   123 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0001650 "fibrillar center" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0007059 "chromosome segregation" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0008134 "transcription factor binding" evidence=ISO

GO:0010469 "regulation of receptor activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0016604 "nuclear body" evidence=ISO;IDA

GO:0016605 "PML body" evidence=IEA;ISO

GO:0016925 "protein sumoylation" evidence=IEA;ISO;IDA

GO:0019789 "SUMO ligase activity" evidence=ISO;IDA

GO:0019899 "enzyme binding" evidence=IEA;ISO

GO:0030425 "dendrite" evidence=IDA

GO:0033145 "positive regulation of intracellular steroid hormone receptor signaling pathway" evidence=IDA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0043398 "HLH domain binding" evidence=IEA;ISO

GO:0043425 "bHLH transcription factor binding" evidence=IPI

GO:0045202 "synapse" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IEA;ISO

GO:0051091 "positive regulation of sequence-specific DNA binding transcription factor activity" evidence=IDA

GO:0051301 "cell division" evidence=IEA

GO:0071535 "RING-like zinc finger domain binding" evidence=IEA;ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9DDJ0	UBC9B_DANRE	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9872	yes	no
P63280	UBC9_MOUSE	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	yes	no
Q2EF73	UBC9_SPETR	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	N/A	no
Q42551	SCE1_ARATH	6, ., 3, ., 2, ., -	0.8364	0.9875	0.9875	yes	no
O09181	UBC9_MESAU	6, ., 3, ., 2, ., -	0.6089	0.9687	0.9810	N/A	no
P40984	UBC9_SCHPO	6, ., 3, ., 2, ., -	0.5961	0.9687	0.9872	yes	no
P63279	UBC9_HUMAN	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	yes	no
Q6Y1Z4	UBC9_PAGMA	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	N/A	no
P50623	UBC9_YEAST	6, ., 3, ., 2, ., -	0.6351	0.9187	0.9363	yes	no
P63283	UBC9_CHICK	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	yes	no
P63282	UBC9_XENLA	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	N/A	no
P63281	UBC9_RAT	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	yes	no
Q95017	UBC9_CAEEL	6, ., 3, ., 2, ., -	0.5779	0.9562	0.9216	yes	no
Q9W6H5	UBC9A_DANRE	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	yes	no
Q28CQ4	UBC9_XENTR	6, ., 3, ., 2, ., -	0.6410	0.9687	0.9810	yes	no
Q9NGP4	UBC9_DICDI	6, ., 3, ., 2, ., -	0.6153	0.9687	0.9748	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2.19	LOW CONFIDENCE prediction!
3rd Layer	6.3.2	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00014866001	RecName- Full=Ubiquitin carrier protein; EC=6.3.2.-; (160 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00025945001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (101 aa)						•			0.800
	GSVIVG00012332001	SubName- Full=Putative uncharacterized protein (Chromosome undetermined scaffold_370, whole gen [...] (114 aa)						•			0.800
	GSVIVG00010419001	SubName- Full=Chromosome undetermined scaffold_260, whole genome shotgun sequence; (103 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
COG5078	153	COG5078, COG5078, Ubiquitin-protein ligase [Posttr	1e-63
smart00212	145	smart00212, UBCc, Ubiquitin-conjugating enzyme E2,	9e-61
pfam00179	139	pfam00179, UQ_con, Ubiquitin-conjugating enzyme	9e-61
cd00195	141	cd00195, UBCc, Ubiquitin-conjugating enzyme E2, ca	5e-53
PTZ00390	152	PTZ00390, PTZ00390, ubiquitin-conjugating enzyme;	9e-24
PLN00172	147	PLN00172, PLN00172, ubiquitin conjugating enzyme;	3e-22

>gnl|CDD|227410 COG5078, COG5078, Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

 Score =  191 bits (488), Expect = 1e-63
 Identities = 69/150 (46%), Positives = 87/150 (58%), Gaps = 5/150 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL +E K  +K+ P G  A P   D   NL  WE  I G   T +EGG F LTL F 
Sbjct: 6   ALKRLLKELKKLQKDPPPGISAGPVDDD---NLFHWEATITGPPDTPYEGGIFKLTLEFP 62

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           EDYP KPPK +F    FHPNV PSG VCL IL +   W P  T++ IL+ +Q LL  PNP
Sbjct: 63  EDYPFKPPKVRFTTKIFHPNVDPSGNVCLDILKDR--WSPVYTLETILLSLQSLLLSPNP 120

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             P  T+   L+ +D  EY+++VR+  K+Y
Sbjct: 121 DSPLNTEAATLYREDKEEYEKKVREWVKKY 150

Length = 153

>gnl|CDD|214562 smart00212, UBCc, Ubiquitin-conjugating enzyme E2, catalytic domain homologues

 Score =  184 bits (469), Expect = 9e-61
 Identities = 64/147 (43%), Positives = 90/147 (61%), Gaps = 4/147 (2%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K  RK+ P GF A P   +   NL+ W   I G  GT +EGG F LT+ F EDY
Sbjct: 1   RLLKELKELRKDPPPGFTAYPVDDE---NLLEWTGTIVGPPGTPYEGGVFKLTIEFPEDY 57

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK KF    +HPNV  SG +CL IL ++  W PA+T++ +L+ +Q LL +PNP  P
Sbjct: 58  PFKPPKVKFITKIYHPNVDSSGEICLDILKQEK-WSPALTLETVLLSLQSLLSEPNPDSP 116

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              D  +L+ ++  E+K++ R+  K+Y
Sbjct: 117 LNADAAELYKKNREEFKKKAREWTKKY 143

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 145

>gnl|CDD|215772 pfam00179, UQ_con, Ubiquitin-conjugating enzyme

 Score =  183 bits (468), Expect = 9e-61
 Identities = 64/144 (44%), Positives = 88/144 (61%), Gaps = 5/144 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K   K+ P G  A P       NL  WE  I G  GT +EGG F L + F EDY
Sbjct: 1   RLQKELKELLKDPPPGISAFPV----DDNLFEWEVTIIGPEGTPYEGGVFKLDIEFPEDY 56

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK KF    +HPNV PSG +CL IL ++N W PA+T++Q+L+ IQ LL +PNP DP
Sbjct: 57  PFKPPKVKFTTKIYHPNVDPSGEICLDILKDEN-WSPALTIEQVLLSIQSLLSEPNPEDP 115

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQA 153
              +  +L+ ++  E++++VR+  
Sbjct: 116 LNAEAAKLYRKNREEFEKKVREYV 139

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. TSG101 is one of several UBC homologues that lacks this active site cysteine. Length = 139

>gnl|CDD|238117 cd00195, UBCc, Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

 Score =  164 bits (417), Expect = 5e-53
 Identities = 58/144 (40%), Positives = 87/144 (60%), Gaps = 5/144 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E K  +K+ P G  A+P  +    NL+ W   I G   T +EGG F L + F EDY
Sbjct: 3   RLQKELKDLKKDPPSGISAEPVEE----NLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDY 58

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK +F    +HPNV  +G +CLSIL    GW PA T++ +L+ +Q LL++PNP+DP
Sbjct: 59  PFKPPKVRFVTKIYHPNVDENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDP 117

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQA 153
              +  +L+ ++  E+K++ R+  
Sbjct: 118 LNAEAAKLYKENREEFKKKAREWT 141

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD. Length = 141

>gnl|CDD|240397 PTZ00390, PTZ00390, ubiquitin-conjugating enzyme; Provisional

 Score = 90.3 bits (224), Expect = 9e-24
 Identities = 48/147 (32%), Positives = 79/147 (53%), Gaps = 6/147 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    + P G  A+P+      N   ++ ++ G  GT +EGGY+ L L+  E Y
Sbjct: 6   RIEKETQNLANDPPPGIKAEPDPG----NYRHFKILMEGPDGTPYEGGYYKLELFLPEQY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P P DP
Sbjct: 62  PMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAPEPDDP 119

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             T     F  + A+ ++  R+  ++Y
Sbjct: 120 LDTSVADHFKNNRADAEKVAREWNQKY 146

Length = 152

>gnl|CDD|177768 PLN00172, PLN00172, ubiquitin conjugating enzyme; Provisional

 Score = 86.3 bits (213), Expect = 3e-22
 Identities = 52/151 (34%), Positives = 83/151 (54%), Gaps = 6/151 (3%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E K   K+ P    A P  +    NL  W   I G + + + GG F L++ F
Sbjct: 1   MATKRIQKEHKDLLKDPPSNCSAGPSDE----NLFRWTASIIGPSDSPYAGGVFFLSILF 56

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK +F    +HPN+  +G++CL IL +   W PA+TV ++L+ I  LL  PN
Sbjct: 57  PPDYPFKPPKVQFTTKIYHPNINSNGSICLDILRDQ--WSPALTVSKVLLSISSLLTDPN 114

Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  ++F ++ + Y+   R+  ++Y
Sbjct: 115 PDDPLVPEIARVFKENRSRYEATAREWTQRY 145

Length = 147

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
COG5078	153	Ubiquitin-protein ligase [Posttranslational modifi	100.0
KOG0417	148	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0419	152	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PTZ00390	152	ubiquitin-conjugating enzyme; Provisional	100.0
PLN00172	147	ubiquitin conjugating enzyme; Provisional	100.0
KOG0424	158	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0425	171	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0426	165	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0418	200	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
PF00179	140	UQ_con: Ubiquitin-conjugating enzyme; InterPro: IP	100.0
cd00195	141	UBCc Ubiquitin-conjugating enzyme E2, catalytic (U	100.0
smart00212	145	UBCc Ubiquitin-conjugating enzyme E2, catalytic do	100.0
KOG0421	175	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0422	153	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0416	189	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0420	184	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0423	223	consensus Ubiquitin-protein ligase [Posttranslatio	100.0
KOG0427	161	consensus Ubiquitin conjugating enzyme [Posttransl	99.97
KOG0894	244	consensus Ubiquitin-protein ligase [Posttranslatio	99.97
KOG0429	258	consensus Ubiquitin-conjugating enzyme-related pro	99.94
KOG0428	314	consensus Non-canonical ubiquitin conjugating enzy	99.91
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.75
KOG0896	138	consensus Ubiquitin-conjugating enzyme E2 [Posttra	99.67
KOG0895	1101	consensus Ubiquitin-conjugating enzyme [Posttransl	99.65
KOG0897	122	consensus Predicted ubiquitin-conjugating enzyme [	98.74
PF14461	133	Prok-E2_B: Prokaryotic E2 family B	98.73
PF05743	121	UEV: UEV domain; InterPro: IPR008883 The N-termina	98.48
PF08694	161	UFC1: Ubiquitin-fold modifier-conjugating enzyme 1	98.25
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	97.93
KOG3357	167	consensus Uncharacterized conserved protein [Funct	97.6
PF05773	113	RWD: RWD domain; InterPro: IPR006575 The RWD eukar	96.47
smart00591	107	RWD domain in RING finger and WD repeat containing	96.17
PF14462	122	Prok-E2_E: Prokaryotic E2 family E	95.97
PF14457	162	Prok-E2_A: Prokaryotic E2 family A	95.24
PF09765	291	WD-3: WD-repeat region; InterPro: IPR019162 This e	91.81
KOG4018	215	consensus Uncharacterized conserved protein, conta	87.59
PF14460	175	Prok-E2_D: Prokaryotic E2 family D	83.88
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	82.23

>COG5078 Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.8e-55  Score=312.49  Aligned_cols=148  Identities=46%  Similarity=0.816  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      .|.+||++|++.|+++++.++++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|+++||||
T Consensus         5 ~a~~RL~kE~~~l~~~~~~~~~a~p~~d---~~l~~w~~~i~GP~dtpYegg~f~~~l~fP~~YP~~PPkv~F~t~i~HP   81 (153)
T COG5078           5 SALKRLLKELKKLQKDPPPGISAGPVDD---DNLFHWEATITGPPDTPYEGGIFKLTLEFPEDYPFKPPKVRFTTKIFHP   81 (153)
T ss_pred             hHHHHHHHHHHHHhcCCCCceEEEECCC---CcceeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeeccCCcCC
Confidence            3999999999999999999999999873   3999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        86 nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||.+|+||+++|.+  +|+|++++.+||.+|+++|.+||.++|+|.+||++|++|+++|.++||+++++|+.
T Consensus        82 NV~~~G~vCLdIL~~--~WsP~~~l~sILlsl~slL~~PN~~~Pln~daa~~~~~d~~~y~~~vr~~~~~~~~  152 (153)
T COG5078          82 NVDPSGNVCLDILKD--RWSPVYTLETILLSLQSLLLSPNPDSPLNTEAATLYREDKEEYEKKVREWVKKYAE  152 (153)
T ss_pred             CcCCCCCChhHHHhC--CCCccccHHHHHHHHHHHHcCCCCCCCCChHHHHHHHhCHHHHHHHHHHHHHHhcc
Confidence            999999999999998  89999999999999999999999999999999999999999999999999999974

>KOG0417 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.4e-55  Score=304.98  Aligned_cols=146  Identities=39%  Similarity=0.765  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.+||.+|+++|++++++|+++.+..    +|+++|+++|.||.|||||||+|++.|.||++||++||+|+|.|+|||||
T Consensus         2 a~~RI~kE~~~l~~dp~~~~~~~~~~----dnl~~w~a~I~GP~~SpYEgG~F~l~I~~p~~YP~~PPkV~F~TkIyHPN   77 (148)
T KOG0417|consen    2 ASKRIIKELQDLLRDPPPGCSAGPVG----DNLFHWQATILGPPGSPYEGGVFFLEIHFPEDYPFKPPKVRFLTKIYHPN   77 (148)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCCCC----CceeeEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCceEeecccccCC
Confidence            46799999999999999999998766    89999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+..|+||+++|..  .|+|++++.+||.+|++||.+|++++|++.+++.+|+.|+++|++.||+|+++||.
T Consensus        78 I~~~G~IclDILk~--~WsPAl~i~~VllsI~sLL~~PnpddPL~~~ia~~~k~d~~~~~~~ARewt~kyA~  147 (148)
T KOG0417|consen   78 IDSNGRICLDILKD--QWSPALTISKVLLSICSLLSDPNPDDPLVPDIAELYKTDRAKYERTAREWTRKYAM  147 (148)
T ss_pred             cCccccchHHhhhc--cCChhhHHHHHHHHHHHHhcCCCCCccccHHHHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            99999999999999  79999999999999999999999999999999999999999999999999999985

>KOG0419 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.3e-53  Score=287.45  Aligned_cols=148  Identities=44%  Similarity=0.830  Sum_probs=144.6

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||  +.|-|||++|+++|+++++.|++..|.+    +|++.|.+.|+||.+|||+||+|++.|+|+++||.+||.|+|.+
T Consensus         1 Ms--tpArrrLmrDfkrlqedpp~gisa~P~~----~niM~W~a~I~Gp~~tp~e~gtFkLtl~FteeYpnkPP~VrFvs   74 (152)
T KOG0419|consen    1 MS--TPARRRLMRDFKRLQEDPPAGISAAPVE----NNIMEWNAVIFGPQDTPFEGGTFKLTLEFTEEYPNKPPTVRFVS   74 (152)
T ss_pred             CC--chHHHHHHHHHHHhhcCCCCCccCCCCc----cceeeeeeeEEcCCCCCcCCceEEEEEEcccccCCCCCeeEeee
Confidence            78  8899999999999999999999999998    89999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      ++||||||.+|.+|+++|..  .|+|.+++.+||.+||+||.+|++++|+|.+||++|++|+.+|.+++++.+.+.
T Consensus        75 ~mFHPNvya~G~iClDiLqN--rWsp~Ydva~ILtsiQslL~dPn~~sPaN~eAA~Lf~e~~rey~rrVk~~veqs  148 (152)
T KOG0419|consen   75 KMFHPNVYADGSICLDILQN--RWSPTYDVASILTSIQSLLNDPNPNSPANSEAARLFSENKREYERRVKETVEQS  148 (152)
T ss_pred             eccCCCcCCCCcchHHHHhc--CCCCchhHHHHHHHHHHHhcCCCCCCcccHHHHHHHhhChHHHHHHHHHHHHHh
Confidence            99999999999999999999  899999999999999999999999999999999999999999999999988764

>PTZ00390 ubiquitin-conjugating enzyme; Provisional

Probab=100.00  E-value=2.8e-51  Score=294.83  Aligned_cols=146  Identities=33%  Similarity=0.717  Sum_probs=142.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.|||++|+++|+++++.|+.+.+.+    +|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|++||||
T Consensus         3 ~~kRl~~E~~~l~~~~~~~i~~~~~~----~d~~~w~~~i~GP~~tpY~gg~f~~~i~~p~~YP~~pP~v~F~t~i~HPN   78 (152)
T PTZ00390          3 ISKRIEKETQNLANDPPPGIKAEPDP----GNYRHFKILMEGPDGTPYEGGYYKLELFLPEQYPMEPPKVRFLTKIYHPN   78 (152)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEECC----CCccEEEEEEEcCCCCCCcCcEEEEEEECccccCCCCCEEEEecCCeece
Confidence            78999999999999999999998876    79999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+.+|.||+++|..  +|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|++.|.++||+|+++||.
T Consensus        79 V~~~G~iCl~iL~~--~W~p~~ti~~iL~~i~~ll~~P~~~~pln~~aa~~~~~d~~~f~~~a~~~~~~~a~  148 (152)
T PTZ00390         79 IDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPEPDDPLDTSVADHFKNNRADAEKVAREWNQKYAK  148 (152)
T ss_pred             ECCCCeEECccCcc--cCCCCCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999999987  89999999999999999999999999999999999999999999999999999985

>PLN00172 ubiquitin conjugating enzyme; Provisional

Probab=100.00  E-value=2.1e-50  Score=289.08  Aligned_cols=145  Identities=36%  Similarity=0.744  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      |.+||++|+++|+++++.|+.+.+.+    +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++||||
T Consensus         2 a~~Rl~kE~~~l~~~~~~~~~~~~~~----~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPN   77 (147)
T PLN00172          2 ATKRIQKEHKDLLKDPPSNCSAGPSD----ENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTKIYHPN   77 (147)
T ss_pred             hHHHHHHHHHHHHhCCCCCeEEEECC----CChheEEEEEECCCCCCCCCCEEEEEEECCcccCCCCCEEEEecCcccce
Confidence            36999999999999999999998876    89999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |+.+|.||+++|..  +|+|++++++||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||
T Consensus        78 v~~~G~iCl~il~~--~W~p~~ti~~il~~i~~ll~~P~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~a  146 (147)
T PLN00172         78 INSNGSICLDILRD--QWSPALTVSKVLLSISSLLTDPNPDDPLVPEIARVFKENRSRYEATAREWTQRYA  146 (147)
T ss_pred             ECCCCEEEcccCcC--CCCCcCcHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhh
Confidence            99999999999987  8999999999999999999999999999999999999999999999999999997

>KOG0424 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.9e-50  Score=276.76  Aligned_cols=156  Identities=68%  Similarity=1.225  Sum_probs=151.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      ||  +.++.||+.|-+.+.++.+.|+++.|..+ |+..|++.|+|.|.|+.||+||||.|.+++.||++||.+||+++|.
T Consensus         1 ~s--~~~~~rl~eErk~wrk~hp~gf~AkP~~~~dg~~nl~~Wec~IPG~~~t~wEGg~y~l~v~F~~dyP~~PPkckF~   78 (158)
T KOG0424|consen    1 MS--GIALNRLAEERKKWRKDHPFGFYAKPVKNADGTLNLMNWECGIPGKKGTPWEGGLYKLTVNFPDDYPSSPPKCKFK   78 (158)
T ss_pred             Cc--chHHHHHHHHHHHHhhcCCCceeeeccCCCCCcceeEEEEeecCCCCCCcCcCceEEEEEeCCccCCCCCCccccC
Confidence            77  78899999999999999999999999988 6689999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        80 t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      +++||||||++|.|||++|.++.+|+|+.||.+||..||+||.+||+.+|+|.||...|.+|+.+|.++||.++++|++
T Consensus        79 ~pl~HPNVypsgtVcLsiL~e~~~W~paitikqiL~gIqdLL~~Pn~~~pAq~eA~~~~~~~r~eYekrvr~qak~~a~  157 (158)
T KOG0424|consen   79 PPLFHPNVYPSGTVCLSILNEEKDWRPAITIKQILLGIQDLLDTPNITSPAQTEAYTIYCQDRAEYEKRVRAQAKEYAK  157 (158)
T ss_pred             CCCcCCCcCCCCcEehhhhccccCCCchhhHHHHHHHHHHHhcCCCCCCchhhHHHHHHhhCHHHHHHHHHHHHHHhcc
Confidence            9999999999999999999997679999999999999999999999999999999999999999999999999999986

>KOG0425 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=4.8e-49  Score=275.04  Aligned_cols=153  Identities=34%  Similarity=0.668  Sum_probs=143.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      |++++ +..-|+++|++|++++..|+++...++   .|+++|.|.|+||++|+|+||.|+..+.||.+||.+||+++|++
T Consensus         1 m~~~~-a~~ll~~qlk~L~~~pv~gf~~glvd~---~dif~WeV~i~gppdTlYeGG~FkA~m~FP~dYP~sPP~~rF~s   76 (171)
T KOG0425|consen    1 MTSSQ-ASLLLLKQLKELQEEPVEGFSVGLVDD---SDIFEWEVAIIGPPDTLYEGGFFKAHMKFPQDYPLSPPTFRFTS   76 (171)
T ss_pred             Cccch-hHHHHHHHHHHHhcCCCCccccccccC---CceeEEEEEEEcCCCccccCceeEEEEeCcccCCCCCCceeeeh
Confidence            45434 788999999999999999999876553   79999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHH
Q 031408           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV  149 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~  149 (160)
                      ++||||||++|++|+++|..           .|.|.|.+|+++||++|.++|.+||.++|+|.|||+.|++|+++|.+++
T Consensus        77 ~mwHPNvy~~G~vCISILH~pgdD~~gyE~~~erW~Pv~tvetIllSiIsmL~~PN~~SPANVDAa~~~Ren~~EykkkV  156 (171)
T KOG0425|consen   77 KMWHPNVYEDGDVCISILHPPGDDPSGYELPSERWLPVQTVETILLSIISMLNSPNDESPANVDAAKEWRENPEEYKKKV  156 (171)
T ss_pred             hhcCCCcCCCCCEEEEeecCCCCCcccCCChhhccCCccchhHhHHHHHHHHcCCCCCCccchHHHHHHhhCHHHHHHHH
Confidence            99999999999999999986           2689999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcC
Q 031408          150 RQQAKQYP  157 (160)
Q Consensus       150 r~~~~~~~  157 (160)
                      +++|++..
T Consensus       157 ~r~vr~s~  164 (171)
T KOG0425|consen  157 RRCVRRSQ  164 (171)
T ss_pred             HHHHHHHH
Confidence            99998754

>KOG0426 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.3e-46  Score=256.04  Aligned_cols=151  Identities=38%  Similarity=0.764  Sum_probs=145.3

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      |+  +.|+|||++||++|..+++.||.+.|..+   +|.+.|.+.|.||++|+|+||.|..++.||.+||.+||+++|..
T Consensus         1 m~--~~AlkRLm~EykqLt~~~P~GIvAgP~~E---dnfF~W~cLI~GP~~T~f~~GvfpA~l~FP~DYPLsPPkm~Ftc   75 (165)
T KOG0426|consen    1 MA--GTALKRLMAEYKQLTLNPPEGIVAGPINE---DNFFEWECLIQGPEDTCFEGGVFPARLSFPLDYPLSPPKMRFTC   75 (165)
T ss_pred             Cc--hhHHHHHHHHHHHHccCCCCcceeCCCCc---cceeeeeeeeeCCCCCcccCCccceeeecCCCCCCCCCceeeec
Confidence            67  88999999999999999999999999875   89999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHH
Q 031408           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV  149 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~  149 (160)
                      .+|||||+.+|++|+++|..           .|.|+|.++++.||.++.++|.+||.++.+|.+|+.++++|+++|.+.|
T Consensus        76 ~~fHPNiy~dG~VCISILHaPGDDP~~YEls~ERWSPVQSvEKILLSV~SMLaEPNdESgANvdA~~mWRe~R~ef~~i~  155 (165)
T KOG0426|consen   76 EMFHPNIYPDGRVCISILHAPGDDPMGYELSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDACKMWREDREEFEKIA  155 (165)
T ss_pred             ccccCcccCCCeEEEEEeeCCCCCCccchhhhhcCChHHHHHHHHHHHHHHHcCCCcccCcccHHHHHHHHhHHHHHHHH
Confidence            99999999999999999975           2789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhc
Q 031408          150 RQQAKQY  156 (160)
Q Consensus       150 r~~~~~~  156 (160)
                      |..++|.
T Consensus       156 ~~lvrKt  162 (165)
T KOG0426|consen  156 KRLVRKT  162 (165)
T ss_pred             HHHHHHh
Confidence            9999875

>KOG0418 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.5e-45  Score=264.65  Aligned_cols=149  Identities=31%  Similarity=0.582  Sum_probs=143.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031408            1 MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (160)
                      ||  . +.+||++|++++.+++   ..||.++...    +|+.+..+.|.||+|||||||+|.+.|++|++|||+||+|+
T Consensus         1 m~--~-~~~ri~~e~k~v~~~~eisq~~I~ve~vn----~~~~~ikG~I~GP~~TPYEGG~FeldI~iPe~YPF~pPkv~   73 (200)
T KOG0418|consen    1 MS--N-AFKRINREQKEVLDDPEISQAGIIVEMVN----ENLKEIKGHIAGPEDTPYEGGVFELDIKIPENYPFKPPKVK   73 (200)
T ss_pred             Cc--c-HHHHHHHHHHHhccChhhhhcceEEEEcc----CChhhceeEecCCCCCCCCCceEEEEEecCCCCCCCCCcee
Confidence            67  6 8999999999999988   6899998877    89999999999999999999999999999999999999999


Q ss_pred             eccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        78 f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      |.|+||||||+ .+|.||+++|..  .|.+++|+.++|++||++|..|++.+|.+...|++|.+|++.|.+.||.|+..|
T Consensus        74 F~TkIwHPnVSs~tGaICLDilkd--~Wa~slTlrtvLislQalL~~pEp~dPqDavva~qy~~n~~~F~~TAr~WT~~f  151 (200)
T KOG0418|consen   74 FITKIWHPNVSSQTGAICLDILKD--QWAASLTLRTVLISLQALLCAPEPKDPQDAVVAEQYVDNYEMFYKTARYWTTEF  151 (200)
T ss_pred             eeeeeecCCCCcccccchhhhhhc--ccchhhhHHHHHHHHHHHHcCCCCCChHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            99999999999 599999999999  899999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 031408          157 PP  158 (160)
Q Consensus       157 ~~  158 (160)
                      |+
T Consensus       152 A~  153 (200)
T KOG0418|consen  152 AG  153 (200)
T ss_pred             hC
Confidence            85

>PF00179 UQ_con: Ubiquitin-conjugating enzyme; InterPro: IPR000608 The post-translational attachment of ubiquitin (IPR000626 from INTERPRO) to proteins (ubiquitinylation) alters the function, location or trafficking of a protein, or targets it to the 26S proteasome for degradation [, , ]

Probab=100.00  E-value=1.1e-44  Score=258.00  Aligned_cols=140  Identities=41%  Similarity=0.817  Sum_probs=129.1

Q ss_pred             HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccccC
Q 031408           10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP   89 (160)
Q Consensus        10 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~   89 (160)
                      ||++|+++++++++.|+.+.+..+   +|+++|+++|.||++|||+||.|+|.|.||++||++||+|+|.|++|||||+.
T Consensus         1 Rl~~E~~~l~~~~~~~~~~~~~~~---~~~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPni~~   77 (140)
T PF00179_consen    1 RLQKELKELQKNPPPGISVQPSED---DNLFEWHVTIFGPPGTPYEGGIFKFRISFPPDYPFSPPKVRFLTPIFHPNIDE   77 (140)
T ss_dssp             HHHHHHHHHHHSHTTTEEEEEEST---TETTEEEEEEEBETTSTTTTSEEEEEEEETTTTTTS--EEEESSS-SBTTB-T
T ss_pred             CHHHHHHHHhhCCCCCEEEEECCC---CChheEEEEEeccCccceecccccccccccccccccccccccccccccccccc
Confidence            899999999999999999998772   49999999999999999999999999999999999999999999999999999


Q ss_pred             CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031408           90 SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA  153 (160)
Q Consensus        90 ~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~  153 (160)
                      +|+||+++|..+ .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|.
T Consensus        78 ~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~~~n~~a~~~~~~~~~~f~~~~~~~~  140 (140)
T PF00179_consen   78 NGRICLDILNPE-SWSPSYTIESILLSIQSLLSEPNPEDPLNEEAAELYKNDREEFEKKAREWA  140 (140)
T ss_dssp             TSBBGHGGGTTT-TC-TTSHHHHHHHHHHHHHHSTCTTSTSSHHHHHHHHHCHHHHHHHHHHH-
T ss_pred             cccchhhhhhcc-cCCcccccccHHHHHHHHHhCCCCCCcchHHHHHHHHHCHHHHHHHHHHcC
Confidence            999999999862 599999999999999999999999999999999999999999999999984

Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade []. The E1 enzyme mediates an ATP-dependent transfer of a thioester-linked ubiquitin molecule to a cysteine residue on the E2 enzyme. The E2 enzyme (6.3.2.19 from EC) then either transfers the ubiquitin moiety directly to a substrate, or to an E3 ligase, which can also ubiquitinylate a substrate. There are several different E2 enzymes (over 30 in humans), which are broadly grouped into four classes, all of which have a core catalytic domain (containing the active site cysteine), and some of which have short N- and C-terminal amino acid extensions: class I enzymes consist of just the catalytic core domain (UBC), class II possess a UBC and a C-terminal extension, class III possess a UBC and an N-terminal extension, and class IV possess a UBC and both N- and C-terminal extensions. These extensions appear to be important for some subfamily function, including E2 localisation and protein-protein interactions []. In addition, there are proteins with an E2-like fold that are devoid of catalytic activity, but which appear to assist in poly-ubiquitin chain formation.; GO: 0016881 acid-amino acid ligase activity; PDB: 2AAK_A 3SY2_C 1FBV_C 3SQV_C 1C4Z_D 1JAT_B 2GMI_B 2H2Y_D 2R0J_A 3E95_B ....

>cd00195 UBCc Ubiquitin-conjugating enzyme E2, catalytic (UBCc) domain

Probab=100.00  E-value=2.3e-44  Score=256.61  Aligned_cols=140  Identities=41%  Similarity=0.835  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   88 (160)
                      |||++|+++++++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+
T Consensus         2 ~Rl~~E~~~l~~~~~~~~~v~~~~----~~~~~w~~~i~g~~~t~y~g~~~~~~~~~p~~yP~~pP~v~f~~~i~HpnV~   77 (141)
T cd00195           2 KRLQKELKDLKKDPPSGISAEPVE----ENLLEWHGTIRGPPDTPYEGGIFKLDIEFPEDYPFKPPKVRFVTKIYHPNVD   77 (141)
T ss_pred             chHHHHHHHHHhCCCCCeEEEECC----CChhEEEEEEecCCCCCccCCEEEEEEECCCccCCCCCeEEEeCCcccCCCC
Confidence            799999999999999999999876    7999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031408           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA  153 (160)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~  153 (160)
                      .+|.||+++|... .|+|++++.+||.+|+++|.+|+.++|+|.+|+.+|++|+++|.++||+|+
T Consensus        78 ~~G~icl~~l~~~-~W~p~~~l~~il~~i~~~l~~p~~~~~~n~~aa~~~~~~~~~f~~~~~~~~  141 (141)
T cd00195          78 ENGKICLSILKTH-GWSPAYTLRTVLLSLQSLLNEPNPSDPLNAEAAKLYKENREEFKKKAREWT  141 (141)
T ss_pred             CCCCCchhhcCCC-CcCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHhC
Confidence            9999999999882 399999999999999999999999999999999999999999999999874

This is part of the ubiquitin-mediated protein degradation pathway in which a thiol-ester linkage forms between a conserved cysteine and the C-terminus of ubiquitin and complexes with ubiquitin protein ligase enzymes, E3. This pathway regulates many fundamental cellular processes. There are also other E2s which form thiol-ester linkages without the use of E3s as well as several UBC homologs (TSG101, Mms2, Croc-1 and similar proteins) which lack the active site cysteine essential for ubiquitination and appear to function in DNA repair pathways which were omitted from the scope of this CD.

>smart00212 UBCc Ubiquitin-conjugating enzyme E2, catalytic domain homologues

Probab=100.00  E-value=2e-43  Score=252.86  Aligned_cols=144  Identities=44%  Similarity=0.801  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   88 (160)
                      +||++|+++++++++.|+.+.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.++++||||+
T Consensus         1 ~Rl~~E~~~~~~~~~~~~~v~~~~~---~~~~~w~~~i~gp~~~~y~g~~f~~~l~~p~~yP~~pP~v~f~~~i~Hp~i~   77 (145)
T smart00212        1 KRLLKELKELLKDPPPGISAYPVDE---DNLLEWTGTIVGPPGTPYEGGIFKLTIEFPPDYPFKPPKVKFITKIYHPNVD   77 (145)
T ss_pred             ChHHHHHHHHHhCCCCCeEEEECCC---CChheEEEEEEcCCCCCcCCcEEEEEEECCcccCCCCCEEEEeCCceEeeEC
Confidence            5999999999999999999888762   4999999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeecCCC-CCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           89 PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        89 ~~G~icl~~l~-~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      ++|.||+++|. .  +|+|++++.+||.+|+++|.+|+.++|+|.+|+++|.+|++.|.++||+++.+++
T Consensus        78 ~~G~icl~~l~~~--~W~p~~~l~~il~~i~~~l~~p~~~~~~n~eaa~~~~~~~~~f~~~~~~~~~k~~  145 (145)
T smart00212       78 SSGEICLDILKQE--KWSPATTLETVLLSIQSLLSEPNPDSPLNADAATLYKKNREEFKKKAREWTKKYA  145 (145)
T ss_pred             CCCCEehhhcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            99999999998 5  8999999999999999999999999999999999999999999999999999975

Proteins destined for proteasome-mediated degradation may be ubiquitinated. Ubiquitination follows conjugation of ubiquitin to a conserved cysteine residue of UBC homologues. This pathway functions in regulating many fundamental processes required for cell viability.TSG101 is one of several UBC homologues that lacks this active site cysteine.

>KOG0421 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.4e-42  Score=238.17  Aligned_cols=144  Identities=37%  Similarity=0.627  Sum_probs=137.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      ....|||++|+..|+....+||++.|..    +|++.|.++|.||++|+|+|-.|++.+.||.+||+.||+|+|+|+.||
T Consensus        28 ~~V~KRLq~ELm~Lmms~~~gISAFP~~----dnlf~WvGtItGp~dTvyegl~yklSl~Fp~~YPy~pP~vkFltpc~H  103 (175)
T KOG0421|consen   28 HSVTKRLQSELMGLMMSNTPGISAFPES----DNLFKWVGTITGPKDTVYEGLKYKLSLSFPNNYPYKPPTVKFLTPCFH  103 (175)
T ss_pred             chHHHHHHHHHHHHHhcCCCCcccCcCc----CceeEEeeEeeCCCCccccCcEEEEEEecCCCCCCCCCeeEeeccccC
Confidence            4578999999999999999999999877    899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ  155 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~  155 (160)
                      ||||..|.||+++|.+  .|+..+.+++||.+||+||-+||.++|+|..||+++. |.++|.+.+.+.-.+
T Consensus       104 PNVD~~GnIcLDILkd--KWSa~YdVrTILLSiQSLLGEPNn~SPLNaqAAelW~-d~~eykk~l~~~Y~~  171 (175)
T KOG0421|consen  104 PNVDLSGNICLDILKD--KWSAVYDVRTILLSIQSLLGEPNNSSPLNAQAAELWS-DQEEYKKYLEALYKE  171 (175)
T ss_pred             CCccccccchHHHHHH--HHHHHHhHHHHHHHHHHHhCCCCCCCcchhHHHHHhc-CHHHHHHHHHHHhhc
Confidence            9999999999999999  8999999999999999999999999999999999998 899999998776544

>KOG0422 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=5.9e-41  Score=230.19  Aligned_cols=147  Identities=31%  Similarity=0.613  Sum_probs=137.1

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      |.+||++|+.+|+++....+.-..   .++.|++.|++.|. |++-||..|.|++.|.||.+|||+||+|.|.|+|||||
T Consensus         3 a~~Rl~kEL~dl~~~~~~~~rn~~---~~e~nll~wt~lli-pd~ppY~kgaF~l~I~fp~eYPFKPP~i~f~tkiYHpN   78 (153)
T KOG0422|consen    3 APRRLRKELADLQKNKMKFFRNIE---VDEANLLKWTGLLI-PDKPPYNKGAFRLEIDFPVEYPFKPPKIKFKTKIYHPN   78 (153)
T ss_pred             hhHHHHHHHHHHHhccHHHHhhhh---cccccceeEEeEec-CCCCCccCcceEEEeeCCCCCCCCCCeeeeeeeeccCC
Confidence            799999999999998876544222   23489999999999 89999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ||+.|.+|+.++.. |+|.|++...+||++|..++.+|+++.|++.|+|..|.+|+..|.++|.++++||+.
T Consensus        79 VDe~gqvClPiis~-EnWkP~T~teqVlqaLi~liN~P~pe~plr~dlA~ey~~d~~kF~K~Aee~tkK~~e  149 (153)
T KOG0422|consen   79 VDEKGQVCLPIISA-ENWKPATRTEQVLQALIALINDPEPEHPLRIDLAEEYIKDPKKFVKNAEEFTKKYSE  149 (153)
T ss_pred             CCCCCceeeeeeec-ccccCcccHHHHHHHHHHHhcCCCccccchhhHHHHHHHCHHHHHHhHHHHHHHhcC
Confidence            99999999999988 499999999999999999999999999999999999999999999999999999984

>KOG0416 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=2.3e-38  Score=224.17  Aligned_cols=144  Identities=26%  Similarity=0.572  Sum_probs=131.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      .-|||..|...|...   +..+....    +++.+++|.+.||.+|||+||++++++.+|++||++.|.|.|+++|||||
T Consensus         4 ~~rRid~Dv~KL~~s---~yeV~~in----d~m~ef~V~f~GP~ds~YegGvWkv~V~lPd~YP~KSPSIGFvnKIfHPN   76 (189)
T KOG0416|consen    4 GKRRIDTDVMKLLMS---DYEVTIIN----DGMQEFYVKFHGPKDSPYEGGVWKVRVELPDNYPFKSPSIGFVNKIFHPN   76 (189)
T ss_pred             cccchhhHHHHHHhc---CCeEEEec----CcccEEEEEeeCCCCCcccCceEEEEEECCCCCCCCCCcccceeeccCCC
Confidence            468999999888654   34454444    67999999999999999999999999999999999999999999999999


Q ss_pred             ccC-CCceeecCCCCCCCCCCcCCHHHHHH-HHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           87 VYP-SGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~-~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |+. +|.||++.+..  .|+|.+.+..|+. -|-.||..||+.+|+|.+||.+|..++++|.+++|++++|||.|
T Consensus        77 IDe~SGsVCLDViNQ--tWSp~yDL~NIfetfLPQLL~YPNp~DPLN~eAAal~l~~~~~Y~~~v~eY~~kYA~~  149 (189)
T KOG0416|consen   77 IDEASGSVCLDVINQ--TWSPLYDLVNIFETFLPQLLRYPNPSDPLNGEAAALYLRDPEEYEEKVKEYIKKYATP  149 (189)
T ss_pred             chhccCccHHHHHhh--hhhHHHHHHHHHHHHhHHHhcCCCCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhcCh
Confidence            995 99999999999  9999999999997 56788899999999999999999999999999999999999975

>KOG0420 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.7e-37  Score=218.44  Aligned_cols=147  Identities=29%  Similarity=0.548  Sum_probs=128.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      +.++-||++|+.++  +.+++++.. +...++ .+....+++|. |+++.|.||.|.|.+.+|+.||++||+|.++|++|
T Consensus        27 s~a~lrl~~di~el--nLp~t~~~s~~~~~~d-~~~~~~elti~-PdEGyY~gGkf~F~~~v~~~Yp~~PPKVkCltkV~  102 (184)
T KOG0420|consen   27 SAALLRLKKDILEL--NLPPTCSLSFPDSPDD-LNNLEFELTIT-PDEGYYQGGKFRFKFKVPNAYPHEPPKVKCLTKVY  102 (184)
T ss_pred             cHHHHHHHhhhhhc--cCCCccccccccCCcc-cccceEEEEEc-cCcceecCceEEEEEECCCCCCCCCCeeeeeeccc
Confidence            46788888888877  445555532 221122 22225999998 99999999999999999999999999999999999


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |||||.+|.||+++|++  +|+|..++.+|+.+|+.||.+|++++|+|.+||..+++|++.|+.+||+.-..++
T Consensus       103 HPNId~~GnVCLnILRe--dW~P~lnL~sIi~GL~~LF~epn~eDpLN~eAA~~l~~n~e~F~~~Vr~~m~gg~  174 (184)
T KOG0420|consen  103 HPNIDLDGNVCLNILRE--DWRPVLNLNSIIYGLQFLFLEPNPEDPLNKEAAAVLKSNREGFENNVRRAMSGGC  174 (184)
T ss_pred             cCCcCCcchHHHHHHHh--cCccccchHHHHHHHHHHhccCCCcccccHHHHHHHHhCHHHHHHHHHHHHhcCc
Confidence            99999999999999999  8999999999999999999999999999999999999999999999999887665

>KOG0423 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1e-36  Score=216.28  Aligned_cols=147  Identities=28%  Similarity=0.559  Sum_probs=141.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      .+|.|.+|++.|...||.||.+.+-+    .|++...+.|.||.||||++|.|+.++.+..+||.+||+-+|+|+|||||
T Consensus        11 vik~~~kEl~~l~~~PPdGIKV~~Ne----eD~tdiqa~IeGP~GTPYa~GlFRmKL~L~kDFP~sPPKgYFlTKIFHPN   86 (223)
T KOG0423|consen   11 VIKQLAKELKSLDESPPDGIKVVVNE----EDFTDIQADIEGPVGTPYANGLFRMKLALSKDFPHSPPKGYFLTKIFHPN   86 (223)
T ss_pred             HHHHHHHHHHhcccCCCCceEEecCh----HHhHHHHhhccCCCCCccccceeeehhhhcCCCCCCCCcceeeeeeccCC
Confidence            57899999999999999999988755    78899999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |-.+|.||.+.|..  +|+|...|.+||..|+++|..|++++.+|.+|..++.+|.++|.++||-++.-+++|
T Consensus        87 VaaNGEICVNtLKk--DW~p~LGirHvLltikCLLI~PnPESALNEeAGkmLLEnYdeYa~rARl~TeIHa~p  157 (223)
T KOG0423|consen   87 VAANGEICVNTLKK--DWNPSLGIRHVLLTIKCLLIEPNPESALNEEAGKMLLENYDEYARRARLYTEIHAKP  157 (223)
T ss_pred             cccCceehhhhhhc--ccCcccchhhHhhhhheeeecCChHHHHhHHHHHHHHHhHHHHHHHHHHHHHhhcCC
Confidence            99999999999999  899999999999999999999999999999999999999999999999999988875

>KOG0427 consensus Ubiquitin conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.9e-31  Score=181.63  Aligned_cols=122  Identities=33%  Similarity=0.684  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC-cc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~-i~   83 (160)
                      .+|.+||++|+.+++.++|.|+.... .    +|+..|.+.+.|.+||.|+|.+|.+.++||+.||++.|.|.|+.+ ..
T Consensus        14 ~~at~RLqKEl~e~q~~pP~G~~~~v-~----dnlqqWii~v~Ga~GTLYa~e~~qLq~~F~~~YP~esPqVmF~~~~P~   88 (161)
T KOG0427|consen   14 KIATNRLQKELSEWQNNPPTGFKHRV-T----DNLQQWIIEVTGAPGTLYANETYQLQVEFPEHYPMESPQVMFVGPAPL   88 (161)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcceeec-c----cchheeEEEEecCCceeecCcEEEEEEecCCCCCCCCCeEEEecCCCC
Confidence            67899999999999999999998763 3    799999999999999999999999999999999999999999976 58


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcC-CCCCCccCHH
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ-PNPADPAQTD  133 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~  133 (160)
                      ||+||.+|.||+++|.+  .|+|++++.+|.++|.++|.. ..-..|.+.+
T Consensus        89 HPHiYSNGHICL~iL~d--~WsPAmsv~SvClSIlSMLSSs~eKqrP~Dn~  137 (161)
T KOG0427|consen   89 HPHIYSNGHICLDILYD--SWSPAMSVQSVCLSILSMLSSSKEKQRPTDND  137 (161)
T ss_pred             CCceecCCeEEEEeecc--cCCcchhhHHHHHHHHHHHccCccccCCCccc
Confidence            99999999999999999  899999999999999999954 4444555443

>KOG0894 consensus Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=1.3e-30  Score=191.21  Aligned_cols=117  Identities=32%  Similarity=0.602  Sum_probs=106.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      |+. ..|.|||++||+.|+++|.+++.+.|..    +|+.+||.++.||+||||+||.|+.+|.||++||++||.|++.|
T Consensus         1 ma~-k~a~kRl~keY~~l~k~Pv~~i~A~P~p----~nILEWHYvl~GpedTPy~GG~YhGkl~FP~eyP~KPPaI~MiT   75 (244)
T KOG0894|consen    1 MAS-KAAVKRLQKEYRALCKDPVPYIVARPNP----NNILEWHYVLRGPEDTPYYGGYYHGKLIFPPEYPFKPPAITMIT   75 (244)
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCchhhccCCCc----cceeeeEEEeeCCCCCCccCceeeeEEeCCCCCCCCCCeeEEEC
Confidence            443 6799999999999999999999999988    89999999999999999999999999999999999999999998


Q ss_pred             C--cccccccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhhcCCCC
Q 031408           81 G--FFHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNP  126 (160)
Q Consensus        81 ~--i~Hpnv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll~~p~~  126 (160)
                      +  +|.+|    -++|+++-.. .+.|+|+++|++||.+|.++|.+-.+
T Consensus        76 PNGRFktn----tRLCLSiSDfHPdsWNP~WsVStILtGLlSFM~e~~p  120 (244)
T KOG0894|consen   76 PNGRFKTN----TRLCLSISDFHPDSWNPGWSVSTILTGLLSFMTEDSP  120 (244)
T ss_pred             CCCceecC----ceEEEeccccCcCcCCCcccHHHHHHHHHHHHhcCCC
Confidence            5  67776    7999998865 45899999999999999999966443

>KOG0429 consensus Ubiquitin-conjugating enzyme-related protein Ft1, involved in programmed cell death [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=2.2e-26  Score=169.52  Aligned_cols=144  Identities=23%  Similarity=0.392  Sum_probs=130.7

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC--CCCeeeeccCcccc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS--KPPKCKFPQGFFHP   85 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~--~pP~v~f~t~i~Hp   85 (160)
                      .--|+.|+..+.+.+-+||++.|+-    .+-+.|-++|++ ..+.|.||+|+|+|.+|++||.  +.|+|.|.+.+|||
T Consensus        21 ey~llAEf~lV~~ekL~gIyviPSy----an~l~WFGViFv-r~GiyaggVFRFtIliPdnfPdd~dlPrvvF~q~vfHP   95 (258)
T KOG0429|consen   21 EYALLAEFVLVCREKLDGIYVIPSY----ANKLLWFGVIFV-RKGIYAGGVFRFTILIPDNFPDDSDLPRVVFEQSVFHP   95 (258)
T ss_pred             HHHHHHHHHHHHhccCCceEEcccc----cccceEEEEEEE-ecccccCceEEEEEEcCccCCCcCCCCeEEeecccccc
Confidence            3567889999999999999999998    899999999995 5677999999999999999995  58999999999999


Q ss_pred             cccC-CCceeecCCCCCCCCCCc-CCHHHHHHHHHHhhcCCCCCCc-c-CHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           86 NVYP-SGTVCLSILNEDNGWRPA-ITVKQILVGIQDLLDQPNPADP-A-QTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        86 nv~~-~G~icl~~l~~~~~W~p~-~~i~~vl~~i~~ll~~p~~~~p-~-n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      +|.+ ++.+|++-...  .|... .++++||..||.+|++|+.+.+ + |++|+.+|++++++|.++|++++....+
T Consensus        96 ~icp~skeLdl~raf~--eWRk~ehhiwqvL~ylqriF~dpd~si~kl~N~eAa~l~~k~r~ef~~rvqe~vk~sr~  170 (258)
T KOG0429|consen   96 LICPKSKELDLNRAFP--EWRKEEHHIWQVLVYLQRIFYDPDVSIDKLINPEAAVLYKKHRDEFRERVQECVKASRS  170 (258)
T ss_pred             ccCCCccceeHhhhhh--hhhccccHHHHHHHHHHHHhcCcccchhhhcChHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            9995 89999988887  69777 5999999999999999998876 4 9999999999999999999999987543

>KOG0428 consensus Non-canonical ubiquitin conjugating enzyme 1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.91  E-value=6.7e-24  Score=158.71  Aligned_cols=112  Identities=28%  Similarity=0.550  Sum_probs=99.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC--c
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG--F   82 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~--i   82 (160)
                      +.+.|||++|.++|+ +|-..+.+.|++    +|+++|+++|.||.||-|+||+|+.+|.||.+||++||.+..+|+  +
T Consensus        10 npaVkRlmkEa~El~-~Ptd~yha~plE----dNlFEWhFtiRGp~dtdFeGGiYHGRI~lPadYPmKPPs~iLLTpNGR   84 (314)
T KOG0428|consen   10 NPAVKRLMKEAAELK-DPTDHYHAQPLE----DNLFEWHFTIRGPPDTDFEGGIYHGRIVLPADYPMKPPSIILLTPNGR   84 (314)
T ss_pred             CHHHHHHHHHHHHhc-Cchhhhhhccch----hceeeEEEEeeCCCCCCccCceeeeeEecCCCCCCCCCeEEEEcCCCc
Confidence            578999999999997 888888899998    899999999999999999999999999999999999999998875  3


Q ss_pred             ccccccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhh-cCCC
Q 031408           83 FHPNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLL-DQPN  125 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll-~~p~  125 (160)
                      |--    +.+||+++-.. .|.|.|+++|...|.+|..+| ..|+
T Consensus        85 FE~----nkKiCLSISgyHPEtWqPSWSiRTALlAlIgFmPt~p~  125 (314)
T KOG0428|consen   85 FEV----NKKICLSISGYHPETWQPSWSIRTALLALIGFMPTKPE  125 (314)
T ss_pred             eee----CceEEEEecCCCccccCcchhHHHHHHHHHccccCCCC
Confidence            333    47899999876 579999999999999999998 3444

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=2.4e-18  Score=150.12  Aligned_cols=115  Identities=31%  Similarity=0.613  Sum_probs=101.2

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc--Cccccc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ--GFFHPN   86 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t--~i~Hpn   86 (160)
                      +..+.|++-|..+.+.|+.+...+    +.+....+.|.|+++|||++|+|.|.|.||++||.+||.|..-+  -+++||
T Consensus       854 ~~~~~~~~~~~~~~~~~~~vr~~e----~r~d~~~~~~~g~~~tpy~~~~f~fd~~~~~~yp~~pp~~~~~s~~~r~npn  929 (1101)
T KOG0895|consen  854 KKVQTEWKILPLSLPSGIFVRAYE----DRMDLLRAVIVGAAGTPYQDGLFFFDFQFPQDYPSSPPLVHYHSGGVRLNPN  929 (1101)
T ss_pred             HHHHHHHHhhhccCCCceEEEech----HHHHHHHHHhhCCCCCccccceEEEEeecCCCCCCCCCceEeecCceeeCcc
Confidence            445567788888899999998776    77778899999999999999999999999999999999999976  479999


Q ss_pred             ccCCCceeecCCCC-----CCCCCCcCCHHHHHHHHHHhhcC--CCCC
Q 031408           87 VYPSGTVCLSILNE-----DNGWRPAITVKQILVGIQDLLDQ--PNPA  127 (160)
Q Consensus        87 v~~~G~icl~~l~~-----~~~W~p~~~i~~vl~~i~~ll~~--p~~~  127 (160)
                      .|.+|++|+++|+.     .|.|+|+.++.+||.+||.|+.+  |.+.
T Consensus       930 ly~~g~vc~s~l~tw~g~~~e~w~~~s~~lq~l~s~q~l~l~~~py~n  977 (1101)
T KOG0895|consen  930 LYEDGKVCLSLLNTWHGRGNEVWNPSSSILQVLVSIQGLVLNEEPYFN  977 (1101)
T ss_pred             cccccceehhhhccccCCCccccCcchhHHHHHHHhhhhhcccccccC
Confidence            99999999999987     36899999999999999999843  4443

>KOG0896 consensus Ubiquitin-conjugating enzyme E2 [Posttranslational modification, protein turnover, chaperones]

Probab=99.67  E-value=2.4e-16  Score=108.31  Aligned_cols=117  Identities=22%  Similarity=0.296  Sum_probs=100.3

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      .+.-||.+|+.+-++...++.....++++++-.+..|..+|.||+.|+||+.+|.++|.+.++||..||+|+|.+++--+
T Consensus         5 Prnfrlleele~g~kg~g~~~~s~gl~d~~dmtl~rWtg~IiGPprT~yEnRiysLKI~Cgp~YPe~PP~vrf~tkinm~   84 (138)
T KOG0896|consen    5 PRNFRLLEELEEGEKGIGDGTVSWGLEDDDDMTLTRWTGTIIGPPRTMYENRIYSLKIECGPKYPELPPTVRFGTKINMN   84 (138)
T ss_pred             ccchhhhhhhccccccccCceeeccccCCCcceEeeeccceeCCCCcccccceeeEEEecCCCCCCCCceeEEEEEeeec
Confidence            34568999999888887888877777766666778999999999999999999999999999999999999999999999


Q ss_pred             ccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408           86 NVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (160)
Q Consensus        86 nv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~  122 (160)
                      .|+ .+|.+.-..+.--++|.-.+++..+|..++.++.
T Consensus        85 gvn~~~g~Vd~~~i~~L~~W~~~y~~~~vl~~lr~~m~  122 (138)
T KOG0896|consen   85 GVNSSNGVVDPRDITVLARWQRSYSIKMVLGQLRKEMM  122 (138)
T ss_pred             ccccCCCccCccccchhhcccccchhhHHHHhhhHHHH
Confidence            998 4777776554433479999999999999997663

>KOG0895 consensus Ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=99.65  E-value=5.9e-16  Score=135.42  Aligned_cols=114  Identities=31%  Similarity=0.637  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC---c
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG---F   82 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~---i   82 (160)
                      ...+|+++|++-+.++.+.|+.+.+..    ..+...++.|.|+.||||++|+|.|.|.||..||..||.+.+.+.   +
T Consensus       282 ~~skrv~ke~~llskdlpEgifvrp~e----~RMd~I~alIig~~gtPy~~glf~Fdiq~P~~yPa~pp~v~~lt~~~~R  357 (1101)
T KOG0895|consen  282 NWSKKVAKELKLLSKDLPEGIFVRPDE----GRMDLIKALIIGPDGTPYADGLFLFDIQFPDTYPAVPPHVKYLTGGGVR  357 (1101)
T ss_pred             hhHHHHHHHhhhhcccCCCCccccccc----cccceeeeEEecCCCCCCcCCceeeEeecCCCCCCCCceeEEeecccee
Confidence            467999999999999999999999887    889999999999999999999999999999999999999999875   8


Q ss_pred             ccccccCCCceeecCCCC-----CCCCCCc-CCHHHHHHHHHHhhcC
Q 031408           83 FHPNVYPSGTVCLSILNE-----DNGWRPA-ITVKQILVGIQDLLDQ  123 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~-----~~~W~p~-~~i~~vl~~i~~ll~~  123 (160)
                      +.||.|.+|+||+++|..     .+.|+|. .++.++|..||.++.+
T Consensus       358 ~nPNlYn~GKVcLslLgTwtg~~~e~wtp~~~sl~qvL~sIQ~Li~~  404 (1101)
T KOG0895|consen  358 LNPNLYNDGKVCLSLLGTWTGSRREKWTPNGSSLLQVLESIQGLILN  404 (1101)
T ss_pred             ecCCcccCceEEeeeeeecccccccCCCccccchhhhhhhhhhhhcc
Confidence            999999999999999976     2579999 7999999999999954

>KOG0897 consensus Predicted ubiquitin-conjugating enzyme [Posttranslational modification, protein turnover, chaperones]

Probab=98.74  E-value=2.7e-08  Score=66.89  Aligned_cols=93  Identities=22%  Similarity=0.444  Sum_probs=67.0

Q ss_pred             EEEEEEeCCCCCCCCCeeeeccCccccc-ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCC--CCCccCHHHH
Q 031408           59 FPLTLYFSEDYPSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN--PADPAQTDGY  135 (160)
Q Consensus        59 f~~~i~fp~~YP~~pP~v~f~t~i~Hpn-v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~--~~~p~n~~a~  135 (160)
                      .-+.+.|+++||+.||.++...++-.-. |-.+|.||+.+|..+ +|+.+++|+.++++|...+..-.  ...+++.+..
T Consensus        13 ill~~~f~~~fp~~ppf~rvv~p~~~~Gyvl~ggAIcmellt~q-gwssay~Ve~vi~qiaatlVkG~~ri~~~a~k~sk   91 (122)
T KOG0897|consen   13 ILLLDIFDDNFPFMPPFPRVVKPLEDEGYVLEGGAICMELLTKQ-GWSSAYEVERVIMQIAATLVKGGARIEFPAEKSSK   91 (122)
T ss_pred             eEeeeecccCCCCCCCcceeeeecccCCEEecchhhHHHHHccc-cccchhhHHHHHHHHHHHhhccceeEecCcchhhh
Confidence            4467889999999999998775543322 235899999999985 89999999999999999996543  4556655533


Q ss_pred             HHHhh--CHHHHHHHHHHHH
Q 031408          136 QLFIQ--DPAEYKRRVRQQA  153 (160)
Q Consensus       136 ~~~~~--~~~~f~~~~r~~~  153 (160)
                       +|..  --+.|...++-+.
T Consensus        92 -~~s~~qa~~sfksLv~~he  110 (122)
T KOG0897|consen   92 -LYSHSQAQQSFKSLVQIHE  110 (122)
T ss_pred             -HhhHHHHHHHHHHHHHHHH
Confidence             4433  3455666555443

>PF14461 Prok-E2_B: Prokaryotic E2 family B

Probab=98.73  E-value=5.3e-08  Score=68.61  Aligned_cols=66  Identities=32%  Similarity=0.669  Sum_probs=59.2

Q ss_pred             CCCEEEEEEEeCCCCCCCCCeeeeccCc---ccccccCCCceee---cCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408           55 EGGYFPLTLYFSEDYPSKPPKCKFPQGF---FHPNVYPSGTVCL---SILNEDNGWRPAITVKQILVGIQDLLD  122 (160)
Q Consensus        55 ~gg~f~~~i~fp~~YP~~pP~v~f~t~i---~Hpnv~~~G~icl---~~l~~~~~W~p~~~i~~vl~~i~~ll~  122 (160)
                      .|+.+.+.|.+|++||..||.|....+.   +-|||+.+|.+|+   +..-.  .|.|...+..+|..+..+|.
T Consensus        34 ~~~~~~l~l~~p~~FP~~pp~v~l~d~~~~~~~pHv~~~G~LCl~~~~~~~D--~~~P~~~~~~~l~~a~~lL~  105 (133)
T PF14461_consen   34 GGGPFPLRLVFPDDFPYLPPRVYLEDPKQFPLLPHVESDGKLCLLDEELVLD--PWDPEGIIADCLERAIRLLE  105 (133)
T ss_pred             CCeEEEEEEEECCcccCcCCEEEecCccccCccCeEcCCCeEEEecCCcccC--ccCHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999988643   7899999999999   55555  89999999999999999996

>PF05743 UEV: UEV domain; InterPro: IPR008883 The N-terminal ubiquitin E2 variant (UEV) domain is ~145 amino acid residues in length and shows significant sequence similarity to E2 ubiquitin ligases but is unable to catalyze ubiquitin transfer as it lacks the active site cysteine that forms the transient thioester bond with the C terminus of ubiquitin (Ub)

Probab=98.48  E-value=7.4e-07  Score=61.82  Aligned_cols=79  Identities=22%  Similarity=0.440  Sum_probs=55.3

Q ss_pred             CCcceEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccCc-----ccccccCCCceeecCCCCCCCCCC-cC
Q 031408           37 VNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQGF-----FHPNVYPSGTVCLSILNEDNGWRP-AI  108 (160)
Q Consensus        37 ~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~i-----~Hpnv~~~G~icl~~l~~~~~W~p-~~  108 (160)
                      ..+....++|.-    .|+|.+|.  +.|.+|.+||.+||.+......     -+.+||.+|+|.+..|..   |++ ..
T Consensus        30 ~~LL~L~Gtipi----~y~g~~y~iPi~Iwlp~~yP~~pP~v~v~pt~~m~I~~~~~Vd~~G~v~~pyL~~---W~~~~s  102 (121)
T PF05743_consen   30 KLLLCLYGTIPI----TYKGSTYNIPICIWLPENYPYSPPIVYVRPTPSMVIKPSHHVDSNGRVYLPYLQN---WNPPSS  102 (121)
T ss_dssp             EEEEEEEEEEEE----CCTTCCEEEEEEEEE-TTTTTSSSEEEE-GCCTECCGGCCCB-TTSBB-SHHHHT-----TTTS
T ss_pred             heEEEEecCccc----ccCCcccceeEEEEEcccCCCCCCEEEEeCCCCCCcCCCCeECCCCCEeCchhcc---CCCCCC
Confidence            345556666642    48888875  6778899999999999886432     244999999999999877   888 67


Q ss_pred             CHHHHHHHHHHhhc
Q 031408          109 TVKQILVGIQDLLD  122 (160)
Q Consensus       109 ~i~~vl~~i~~ll~  122 (160)
                      ++.+++..+...|.
T Consensus       103 ~L~~lv~~l~~~F~  116 (121)
T PF05743_consen  103 NLVDLVQELQAVFS  116 (121)
T ss_dssp             -HHHHHHHHHHCCC
T ss_pred             CHHHHHHHHHHHHh
Confidence            99999999998884

Nevertheless, at least some UEVs have retained the ability to bind Ub, and appear to act either as cofactors in ubiquitylation reactions, or as ubiquitin sensors. UEV domains also frequently contain other protein recognition motifs, and may generally serve to couple protein and Ub binding functions to facilitate the formation of multiprotein complexes [, , , ]. The UEV domain consists of a twisted four-stranded antiparallel beta-sheet having a meander topology, with four alpha-helices packed against one face of the sheet. The UEV fold is generally similar to canonical E2 ligases in the hydrophobic core and 'active site' regions, but differs significantly at both its N- and C-termini [, ]. The UEV domain is found in the eukaryotic tumour susceptibility gene 101 protein (TSG101). Altered transcripts of this gene have been detected in sporadic breast cancers and many other Homo sapiens malignancies. However, the involvement of this gene in neoplastic transformation and tumourigenesis is still elusive. TSG101 is required for normal cell function of embryonic and adult tissues but this gene is not a tumour suppressor for sporadic forms of breast cancer [].; GO: 0006464 protein modification process, 0015031 protein transport; PDB: 3R3Q_A 3R42_A 1UZX_A 3OBX_A 3OBS_A 3P9H_A 2F0R_A 3P9G_A 3OBQ_A 3OBU_A ....

>PF08694 UFC1: Ubiquitin-fold modifier-conjugating enzyme 1; InterPro: IPR014806 Ubiquitin-like (UBL) post-translational modifiers are covalently linked to most, if not all, target protein(s) through an enzymatic cascade analogous to ubiquitylation, consisting of E1 (activating), E2 (conjugating), and E3 (ligating) enzymes

Probab=98.25  E-value=5e-07  Score=63.15  Aligned_cols=97  Identities=27%  Similarity=0.453  Sum_probs=47.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEeCCCCCCCCCee
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKC   76 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v   76 (160)
                      =..||+.||..|-+..       ....+.++|++....   -++||-|.|.|          |.+.+.+|..||..||.+
T Consensus        25 W~~RLKEEy~aLI~Yv-------~~nK~~DndWF~les---n~~GT~W~GkCW~~h~l~kYEF~~eFdIP~tYP~t~pEi   94 (161)
T PF08694_consen   25 WVQRLKEEYQALIKYV-------ENNKENDNDWFRLES---NKEGTRWFGKCWYIHNLLKYEFDLEFDIPVTYPTTAPEI   94 (161)
T ss_dssp             HHHHHHHHHHHHHHHH-------HHHHHTT---EEEEE----TTSSEEEEEEEEEETTEEEEEEEEEE--TTTTTS----
T ss_pred             HHHHHHHHHHHHHHHH-------HhcccccCCeEEecc---CCCCCccccEEEEEeeeeeEEEeeecCCCccCCCCCcce
Confidence            4689999999984420       000011134443331   25566666644          556666799999999999


Q ss_pred             eecc-CcccccccCCCceeecCCCCCCCC---CCcCCHHHHH
Q 031408           77 KFPQ-GFFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL  114 (160)
Q Consensus        77 ~f~t-~i~Hpnv~~~G~icl~~l~~~~~W---~p~~~i~~vl  114 (160)
                      .... .--....|..|+||++.-... -|   .|.++|.+.|
T Consensus        95 ~lPeLdGKTaKMYRGGkIClt~HFkP-LWakN~PkfGIaHal  135 (161)
T PF08694_consen   95 ALPELDGKTAKMYRGGKICLTDHFKP-LWAKNVPKFGIAHAL  135 (161)
T ss_dssp             B-GGGTTT-SSBCCCCBB---TTHHH-HHHCTTTT--HHHHH
T ss_pred             eccccCCchhhhhcCceEeeecccch-hhhhcCCchhHHHHH
Confidence            8753 223455667899999876542 35   4556776654

Ubiquitin-fold modifier 1 (Ufm1) a ubiquitin-like protein is activated by a novel E1-like enzyme, Uba5, by forming a high-energy thioester bond. Activated Ufm1 is then transferred to its cognate E2-like enzyme, Ufc1, in a similar thioester linkage. This family represents the E2-like enzyme [].; PDB: 2Z6P_A 2K07_A 2Z6O_A 3EVX_D 3KPA_A.

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.93  E-value=7.6e-05  Score=59.40  Aligned_cols=85  Identities=22%  Similarity=0.479  Sum_probs=65.2

Q ss_pred             CCCCCcceEEEEEcCCCCCCCCCCEEE--EEEEeCCCCCCCCCeeeeccC-----cccccccCCCceeecCCCCCCCCCC
Q 031408           34 DGSVNLMIWECIIPGKTGTDWEGGYFP--LTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTVCLSILNEDNGWRP  106 (160)
Q Consensus        34 ~~~~~~~~w~~~i~Gp~~tpy~gg~f~--~~i~fp~~YP~~pP~v~f~t~-----i~Hpnv~~~G~icl~~l~~~~~W~p  106 (160)
                      +...+++...++|.    .+|.|.+|.  +.|.+.+.||..||.|.....     --|-+||.+|+|.+..|..   |.+
T Consensus        47 g~s~~ll~~~GTIp----~~~~G~tYnIPV~iWlldtyP~~pP~c~VnPT~~M~ik~~~hVd~nG~V~LPYLh~---W~~  119 (365)
T KOG2391|consen   47 GRSRLLLQLDGTIP----VPYQGVTYNIPVIIWLLDTYPYYPPICYVNPTSTMIIKVHEHVDPNGKVYLPYLHN---WDP  119 (365)
T ss_pred             CCccchhhccCccc----ccccCCcccceEEEEecccCCCCCCeEEecCCchhhhHHhhccCCCCeEechhhcc---CCC
Confidence            34456666666654    468887776  667789999999999977531     1389999999999999987   865


Q ss_pred             c-CCHHHHHHHHHHhhcCCC
Q 031408          107 A-ITVKQILVGIQDLLDQPN  125 (160)
Q Consensus       107 ~-~~i~~vl~~i~~ll~~p~  125 (160)
                      . ..+..++..|-+.|.++.
T Consensus       120 pssdLv~Liq~l~a~f~~~p  139 (365)
T KOG2391|consen  120 PSSDLVGLIQELIAAFSEDP  139 (365)
T ss_pred             ccchHHHHHHHHHHHhcCCC
Confidence            5 688888888888886644

>KOG3357 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.00012  Score=50.60  Aligned_cols=96  Identities=22%  Similarity=0.387  Sum_probs=59.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEeCCCCCCCCCee
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKC   76 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v   76 (160)
                      =.+||+.||+.|.....       ...+.++|++...   .-++||-|-|.+          |.+.+.+|-.||..+|.+
T Consensus        28 wvqrlkeey~sli~yvq-------nnk~~d~dwfrle---sn~egtrwfgkcwy~hnllkyefdvefdipityp~tapei   97 (167)
T KOG3357|consen   28 WVQRLKEEYQSLIAYVQ-------NNKSNDNDWFRLE---SNKEGTRWFGKCWYVHNLLKYEFDVEFDIPITYPTTAPEI   97 (167)
T ss_pred             HHHHHHHHHHHHHHHHH-------hCcccCCcceEec---cCccccceehhhhHhhhhhhheeeeeeccccccCCCCccc
Confidence            46899999998844211       1112224554333   347888888865          455566699999999998


Q ss_pred             eecc-CcccccccCCCceeecCCCCCCCCCCc---CCHHHH
Q 031408           77 KFPQ-GFFHPNVYPSGTVCLSILNEDNGWRPA---ITVKQI  113 (160)
Q Consensus        77 ~f~t-~i~Hpnv~~~G~icl~~l~~~~~W~p~---~~i~~v  113 (160)
                      .... .--....|..|+||+.--... -|...   .++.+.
T Consensus        98 alpeldgktakmyrggkiclt~hfkp-lwarn~pkfgiaha  137 (167)
T KOG3357|consen   98 ALPELDGKTAKMYRGGKICLTDHFKP-LWARNVPKFGIAHA  137 (167)
T ss_pred             cccccCchhhhhhcCceEeeccccch-hhhhcCcchhHHHH
Confidence            7642 112234456799999766553 57444   444443

>PF05773 RWD: RWD domain; InterPro: IPR006575 The RWD eukaryotic domain is found in RING finger (IPR001841 from INTERPRO) and WD repeat (IPR001680 from INTERPRO) containing proteins and DEXDc-like helicase (IPR001410 from INTERPRO) subfamily related to the ubiquitin-conjugating enzymes domain (IPR000608 from INTERPRO)

Probab=96.47  E-value=0.026  Score=37.69  Aligned_cols=69  Identities=19%  Similarity=0.175  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG   81 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (160)
                      ..+...|+..|+.--+... ..    ....+...+.+.+.+  ...+.-....+.+.+.||++||..+|.|.+...
T Consensus         3 ~e~~~~EieaL~sIy~~~~-~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~~~p~~YP~~~P~i~l~~~   73 (113)
T PF05773_consen    3 EEQQEEEIEALQSIYPDDF-IE----IESKSPPSLEVKLDESSSSFESSSFPSVTLHFTLPPGYPESPPKISLESP   73 (113)
T ss_dssp             HHHHHHHHHHHHHHSSSSE-SS----STSSSSEEEEEEE--CEECCTTTTSEEEEEEEEE-SSTTSS--EEEEEEE
T ss_pred             HHHHHHHHHHHHHHcCCCc-cc----cccCCCCceeeeecccccccccccceeEEEEEeCCCcCCCcCCEEEEEcC
Confidence            3467788988877555444 11    111444556666632  233334456899999999999999999987654

; GO: 0005515 protein binding; PDB: 2EBM_A 2EBK_A 2DAX_A 2DAW_A 2DAY_A 2DMF_A 1UKX_A 2YZ0_A.

>smart00591 RWD domain in RING finger and WD repeat containing proteins and DEXDc-like helicases subfamily related to the UBCc domain

Probab=96.17  E-value=0.094  Score=34.62  Aligned_cols=26  Identities=19%  Similarity=0.373  Sum_probs=21.8

Q ss_pred             CCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408           56 GGYFPLTLYFSEDYPSKPPKCKFPQG   81 (160)
Q Consensus        56 gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (160)
                      .-.+.+.+.||++||..+|.+.+...
T Consensus        40 ~~~~~l~~~~p~~YP~~~P~i~~~~~   65 (107)
T smart00591       40 YVSLTLQVKLPENYPDEAPPISLLNS   65 (107)
T ss_pred             ceEEEEEEECCCCCCCCCCCeEEECC
Confidence            35588999999999999999987653

>PF14462 Prok-E2_E: Prokaryotic E2 family E

Probab=95.97  E-value=0.1  Score=36.09  Aligned_cols=81  Identities=19%  Similarity=0.344  Sum_probs=49.9

Q ss_pred             ceEEEEEcC--CCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc-------cccccC-----CCceeecCCCCCCCCC
Q 031408           40 MIWECIIPG--KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF-------HPNVYP-----SGTVCLSILNEDNGWR  105 (160)
Q Consensus        40 ~~w~~~i~G--p~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~-------Hpnv~~-----~G~icl~~l~~~~~W~  105 (160)
                      ..|.+ |.|  -+.+.|.+..-.+.|.+|+.||..+|-+.+..+..       .|+-..     .|+.--..-.-...|+
T Consensus        24 ~~~li-i~~~~LP~G~y~~~~~dili~iP~gYP~~~~DmfY~~P~L~~~~G~~iP~~~~~~~~~~G~~wQrWSRH~~~W~  102 (122)
T PF14462_consen   24 RRWLI-IKGYPLPEGKYNHNEVDILILIPPGYPDAPLDMFYVYPPLKLADGGPIPNAAEVTQTFDGRTWQRWSRHNNPWR  102 (122)
T ss_pred             ccEEE-EeCCcCCCCccCccceEEEEECCCCCCCCCCCcEEECCceEccCCCcCCchhcchhhcCCeeeeeecCCCCCCC
Confidence            44544 555  56677999999999999999999887655543322       121100     1221000000012699


Q ss_pred             CcC-CHHHHHHHHHHhh
Q 031408          106 PAI-TVKQILVGIQDLL  121 (160)
Q Consensus       106 p~~-~i~~vl~~i~~ll  121 (160)
                      |+. +|.+.|..|...|
T Consensus       103 P~~D~l~T~l~~v~~~L  119 (122)
T PF14462_consen  103 PGVDDLWTHLARVEHAL  119 (122)
T ss_pred             CCCCcHHHHHHHHHHHH
Confidence            987 8999988888766

>PF14457 Prok-E2_A: Prokaryotic E2 family A

Probab=95.24  E-value=0.28  Score=35.71  Aligned_cols=62  Identities=24%  Similarity=0.380  Sum_probs=48.4

Q ss_pred             EEEEEeCCCCCCCCCeeeeccCcc---cccccCC-----CceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408           60 PLTLYFSEDYPSKPPKCKFPQGFF---HPNVYPS-----GTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (160)
Q Consensus        60 ~~~i~fp~~YP~~pP~v~f~t~i~---Hpnv~~~-----G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~  122 (160)
                      .+.|.|+.+||..+|.|.++-+.|   +||+...     ..+|+---.-. .|.+..++..+|..|..-|.
T Consensus        56 ~~~i~~~~~~~~~~P~v~~lR~dFP~~lpH~~~~~~~~p~~lCl~~~~~~-e~~~~~g~~~~l~rl~~Wl~  125 (162)
T PF14457_consen   56 RVAIVFPPDSPLSAPEVPALRKDFPGNLPHQNPGPEGEPVSLCLYEGPWS-EWRPSWGPEGFLDRLFDWLR  125 (162)
T ss_pred             eEEEEecCCCCCCCccchhhHhhCCCCCCccCCCCCCCCccceEecCCHH-HhhhccCHHHHHHHHHHHHH
Confidence            367899999999999877765433   5777754     67998654443 69999999999999998883

>PF09765 WD-3: WD-repeat region; InterPro: IPR019162 This entry represents a region of approximately 100 residues containing three WD repeats and six cysteine residues- possibly as three cysteine-bridges associated with FancL

Probab=91.81  E-value=0.4  Score=38.20  Aligned_cols=85  Identities=20%  Similarity=0.284  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   87 (160)
                      .++|.+|+.++..+....+..   +    +++...++.+.   |+   .....++|.++.+||.++|.+...-++ ... 
T Consensus       101 ys~ll~EIe~IGW~kl~~i~~---d----~~ls~i~l~~~---D~---~R~H~l~l~l~~~yp~~~p~~~~~~P~-~~~-  165 (291)
T PF09765_consen  101 YSNLLKEIEAIGWDKLVQIQF---D----DDLSTIKLKIF---DS---SRQHYLELKLPSNYPFEPPSCSLDLPI-PFS-  165 (291)
T ss_dssp             C-CHHHHHHHHHCGCCEEEEE--------CCCSEEEEEEE---TT---CEEEEEEEETTTTTTTSEEEECS-TTS--HH-
T ss_pred             HHHHHHHHHHhccccceEEec---C----CCccEEEEEEE---cC---CceEEEEEEECCCCCCCCceeeCCCCc-chh-
Confidence            467888998887665433321   2    68888888887   22   257889999999999999987543322 111 


Q ss_pred             cCCCceeecCCCCCCCCCC-cCCHHHHHHHHHHhh
Q 031408           88 YPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLL  121 (160)
Q Consensus        88 ~~~G~icl~~l~~~~~W~p-~~~i~~vl~~i~~ll  121 (160)
                                  .  .|.+ ..++.+++...+..+
T Consensus       166 ------------~--~w~~~~ssL~~v~~qF~~~l  186 (291)
T PF09765_consen  166 ------------L--SWSPSQSSLKDVVQQFQEAL  186 (291)
T ss_dssp             ------------H--HHHCHT-SHHHHHHHHHHHH
T ss_pred             ------------h--hhcccccCHHHHHHHHHHHH
Confidence                        1  5888 678888876666555

FancL is the ubiquitin ligase protein that mediates ubiquitination of FancD2, a key step in the DNA damage pathway [, ]. FancL belongs to the multisubunit Fanconi anemia (FA) complex, which is composed of subunits: FancA, FancB, FancC, FancE, FancF, FancG, FancL/PHF9 and FancM. The WD repeats are required for interaction of FancL with other subunits of the FA complex []. In humans defects in FancL are a cause of Fanconi anemia (FA) [MIM:227650], and the FA complex is not found in FA patients. FA is a genetically heterogeneous, autosomal recessive disorder characterised by progressive pancytopenia, a diverse assortment of congenital malformations, and a predisposition to the development of malignancies. At the cellular level it is associated with hypersensitivity to DNA-damaging agents, chromosomal instability (increased chromosome breakage), and defective DNA repair.; PDB: 3ZQS_B 3K1L_A.

>KOG4018 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=87.59  E-value=2.7  Score=31.87  Aligned_cols=63  Identities=27%  Similarity=0.379  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHcCCCCe-EEeecCCCCCCCcceEEEEEcCCCCC--CCCCCEEEEEEEeCCCCCCCCCeeee
Q 031408            9 GRLTEERKAWRKNHPHGF-VAKPETKDGSVNLMIWECIIPGKTGT--DWEGGYFPLTLYFSEDYPSKPPKCKF   78 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~-~~~~~~~~~~~~~~~w~~~i~Gp~~t--py~gg~f~~~i~fp~~YP~~pP~v~f   78 (160)
                      .-...|+..|....+.-. .+.      +.+...+.++|.--.+.  -+.| .+.+.+.++++||.++|.+.+
T Consensus         5 EeQe~E~EaLeSIY~de~~~i~------~~~~~~f~v~iq~e~~e~d~~~~-~~~l~~s~tEnYPDe~Pli~~   70 (215)
T KOG4018|consen    5 EEQEEELEALESIYPDEFKHIN------SEDPPIFEVTIQYEEGENDEPKG-SFILVFSLTENYPDEAPLIEA   70 (215)
T ss_pred             HHHHHHHHHHHHhccchhhhhh------ccCCccceeeeecccccCCCccc-cEEEEEEccCCCCCCCcceec
Confidence            334556666655433322 111      13333355666521111  1222 788999999999999999943

>PF14460 Prok-E2_D: Prokaryotic E2 family D

Probab=83.88  E-value=1.8  Score=31.74  Aligned_cols=46  Identities=24%  Similarity=0.394  Sum_probs=26.7

Q ss_pred             ccCccc---ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCc
Q 031408           79 PQGFFH---PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP  129 (160)
Q Consensus        79 ~t~i~H---pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p  129 (160)
                      .|++||   +||+.+|+||......     |......-+..+...|.+...+++
T Consensus        89 ~T~Ly~aPf~NV~~~g~vC~G~~~~-----P~~~~~~~i~~we~~Ff~S~ftH~  137 (175)
T PF14460_consen   89 DTPLYHAPFFNVYSNGSVCWGNNSL-----PKISTLASIEAWEDAFFNSPFTHP  137 (175)
T ss_pred             CCeeEeCCccccCCCCcEeeCCCcC-----CCccCHHHHHHHHHHHhCCCccCC
Confidence            345666   5999999999977443     333333445555555433334343

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=82.23  E-value=7.3  Score=35.12  Aligned_cols=66  Identities=14%  Similarity=0.124  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE-EEEEEEeCCCCCCC-CCeeeecc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY-FPLTLYFSEDYPSK-PPKCKFPQ   80 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~-f~~~i~fp~~YP~~-pP~v~f~t   80 (160)
                      +-|.+|+..+-. .-..+.++..+    ..-..-.+++.||-.-. .|-+ .++.|.||-+||.. +|.++|..
T Consensus       423 QnLgeE~S~Ig~-k~~nV~fEkid----va~Rsctvsln~p~~~~-d~y~flrm~V~FP~nYPn~a~P~Fq~e~  490 (1081)
T KOG0309|consen  423 QNLGEEFSLIGV-KIRNVNFEKID----VADRSCTVSLNCPNHRV-DDYIFLRMLVKFPANYPNNAAPSFQFEN  490 (1081)
T ss_pred             hhHHhHHhHhhc-cccccceEeec----cccceEEEEecCCCCcc-ccceeEEEEEeccccCCCCCCCceEEec
Confidence            556777776632 22344444332    22245566777654333 3333 47889999999995 79999864

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
1kps_A	159	Structural Basis For E2-Mediated Sumo Conjugation R		4e-57
2o25_C	160	Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed Wi		5e-57
1u9a_A	160	Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 16		6e-57
3a4s_A	163	The Crystal Structure Of The Sld2:ubc9 Complex Leng		7e-57
1z5s_A	158	Crystal Structure Of A Complex Between Ubc9, Sumo-1		1e-56
2grn_A	161	Crystal Structure Of Human Rangap1-Ubc9 Length = 16		1e-56
2grr_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127s Lengt		5e-56
2gro_A	161	Crystal Structure Of Human Rangap1-Ubc9-N85q Length		5e-56
2grq_A	161	Crystal Structure Of Human Rangap1-Ubc9-D127a Lengt		7e-56
2grp_A	161	Crystal Structure Of Human Rangap1-Ubc9-Y87a Length		8e-56
2uyz_A	158	Non-Covalent Complex Between Ubc9 And Sumo1 Length		1e-55
3uio_A	158	Complex Between Human Rangap1-Sumo2, Ubc9 And The I		1e-55
3rcz_B	163	Rad60 Sld2 Ubc9 Complex Length = 163		4e-53
3ong_B	159	Crystal Structure Of Uba2ufd-ubc9: Insights Into E1		2e-52
2gjd_A	157	Distinct Functional Domains Of Ubc9 Dictate Cell Su		2e-52
2aak_A	152	Ubiquitin Conjugating Enzyme From Arabidopsis Thali		2e-29
1q34_A	163	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		1e-28
1z3d_A	157	Protein Crystal Growth Improvement Leading To The 2		1e-28
1jas_A	152	Hsubc2b Length = 152		4e-28
1ayz_A	169	Crystal Structure Of The Saccharomyces Cerevisiae U		7e-27
2c4p_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		7e-23
2yho_B	149	The Idol-Ube2d Complex Mediates Sterol-Dependent De		7e-23
2oxq_A	152	Structure Of The Ubch5 :chip U-Box Complex Length =		1e-22
2ucz_A	165	Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomy		4e-22
3oj4_A	153	Crystal Structure Of The A20 Znf4, Ubiquitin And Ub		4e-22
2cyx_A	170	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-21
4ap4_B	153	Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Le		3e-21
3h8k_A	164	Crystal Structure Of Ube2g2 Complxed With The G2br		3e-21
3fsh_A	168	Crystal Structure Of The Ubiquitin Conjugating Enzy		3e-21
2kly_A	167	Solution Structure Of Human Ubiquitin Conjugating E		3e-21
2c4o_B	165	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-21
2esk_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wil		5e-21
4ii2_C	163	Crystal Structure Of Ubiquitin Activating Enzyme 1		6e-21
3eb6_B	149	Structure Of The Ciap2 Ring Domain Bound To Ubch5b		6e-21
3tgd_A	152	Crystal Structure Of The Human Ubiquitin-Conjugatin		6e-21
2esq_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		1e-20
2ayv_A	166	Crystal Structure Of A Putative Ubiquitin-Conjugati		1e-20
3rpg_A	149	Bmi1RING1B-Ubch5c Complex Structure Length = 149		2e-20
2esp_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-20
2eso_A	149	Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Muta		2e-20
3l1z_A	157	Crystal Structure Of The U-Box Domain Of Human E4b		2e-20
3l1y_A	157	Crystal Structure Of Human Ubc4 E2 Conjugating Enzy		3e-20
1x23_A	155	Crystal Structure Of Ubch5c Length = 155		4e-20
1ur6_A	147	Nmr Based Structural Model Of The Ubch5b-Cnot4 Comp		4e-20
1z2u_A	150	The 1.1a Crystallographic Structure Of Ubiquitin- C		5e-20
2fuh_A	146	Solution Structure Of The Ubch5cUB NON-Covalent Com		7e-20
3a33_A	150	Ubch5b~ubiquitin Conjugate Length = 150		7e-20
3e95_A	151	Crystal Structure Of The Plasmodium Falciparum Ubiq		9e-20
1y6l_A	149	Human Ubiquitin Conjugating Enzyme E2e2 Length = 14		1e-19
2c4o_A	165	Crystal Structure Of Human Ubiquitin-Conjugating En		1e-19
2r0j_A	149	Crystal Structure Of The Putative Ubiquitin Conjuga		1e-19
4ddg_A	399	Crystal Structure Of Human Otub1UBCH5B~UBUB Length		2e-19
3bzh_A	194	Crystal Structure Of Human Ubiquitin-Conjugating En		5e-19
3ugb_A	147	Ubch5c~ubiquitin Conjugate Length = 147		6e-19
1qcq_A	148	Ubiquitin Conjugating Enzyme Length = 148		9e-19
1pzv_A	164	Crystal Structures Of Two Ubc (E2) Enzymes Of The U		2e-18
3jvz_A	146	E2~ubiquitin-Hect Length = 146		3e-18
4auq_A	147	Structure Of Birc7-Ubch5b-Ub Complex. Length = 147		5e-18
1jat_A	155	Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Leng		8e-18
4gpr_A	151	Crystal Structure Of Ehubc5, A Ubiquitin Conjugatin		8e-18
1jbb_A	153	Ubiquitin Conjugating Enzyme, Ubc13 Length = 153		8e-18
2pwq_A	216	Crystal Structure Of A Putative Ubiquitin Conjugati		3e-17
2awf_A	172	Structure Of Human Ubiquitin-Conjugating Enzyme E2		3e-17
4epo_B	155	Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HE		5e-17
2c2v_B	154	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		7e-17
3hct_B	155	Crystal Structure Of Traf6 In Complex With Ubc13 In		8e-17
1j7d_B	152	Crystal Structure Of Hmms2-Hubc13 Length = 152		8e-17
2gmi_A	152	Mms2UBC13~UBIQUITIN Length = 152		9e-17
3von_C	148	Crystalstructure Of The Ubiquitin Protease Length =		1e-16
2f4z_A	193	Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtw		2e-16
2e2c_A	156	E2-C, An Ubiquitin Conjugating Enzyme Required For		2e-16
1yrv_A	169	Novel Ubiquitin-Conjugating Enzyme Length = 169		3e-16
4fh1_A	153	S. Cerevisiae Ubc13-N79a Length = 153		6e-16
1zdn_A	158	Ubiquitin-Conjugating Enzyme E2s Length = 158		9e-16
2ob4_A	180	Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 1		3e-15
1i7k_A	179	Crystal Structure Of Human Mitotic-Specific Ubiquit		3e-15
3rz3_A	183	Human Cdc34 E2 In Complex With Cc0651 Inhibitor Len		3e-15
1tte_A	215	The Structure Of A Class Ii Ubiquitin-Conjugating E		3e-15
1fxt_A	149	Structure Of A Conjugating Enzyme-Ubiquitin Thioles		3e-15
1yh2_A	169	Ubiquitin-Conjugating Enzyme Hspc150 Length = 169		2e-14
3o2u_A	190	S. Cerevisiae Ubc12 Length = 190		3e-14
3sqv_C	156	Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin L		6e-14
2onu_A	152	Plasmodium Falciparum Ubiquitin Conjugating Enzyme		7e-14
1wzv_A	155	Crystal Structure Of Ubch8 Length = 155		2e-13
1c4z_D	154	Structure Of E6ap: Insights Into Ubiquitination Pat		2e-13
1y8x_A	160	Structural Basis For Recruitment Of Ubc12 By An E2-		3e-13
2z5d_A	179	Human Ubiquitin-Conjugating Enzyme E2 H Length = 17		1e-12
2kjh_A	152	Nmr Based Structural Model Of The Ubch8-Ubiquitin C		1e-12
2nvu_C	180	Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C1		3e-12
2a7l_A	136	Structure Of The Human Hypothetical Ubiquitin-Conju		4e-11
3fn1_B	167	E2-Ring Expansion Of The Nedd8 Cascade Confers Spec		5e-10
2edi_A	173	Solution Structure Of The Uq_con Domain From Human		6e-10
1yf9_A	171	Structural Analysis Of Leishmania Major Ubiquitin C		1e-09
2bep_A	159	Crystal Structure Of Ubiquitin Conjugating Enzyme E		3e-09
3ceg_A	323	Crystal Structure Of The Ubc Domain Of Baculoviral		3e-09
3k9p_A	217	The Crystal Structure Of E2-25k And Ubiquitin Compl		3e-09
3k9o_A	201	The Crystal Structure Of E2-25k And Ubb+1 Complex L		3e-09
1yla_A	202	Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington		3e-09
3e46_A	253	Crystal Structure Of Ubiquitin-Conjugating Enzyme E		4e-09
3e95_C	158	Crystal Structure Of The Plasmodium Falciparum Ubiq		5e-08
2q0v_A	156	Crystal Structure Of Ubiquitin Conjugating Enzyme E		6e-08
2fo3_A	125	Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Le		1e-06
2f4w_A	187	Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 1		1e-06
2y9o_A	172	Pex4p-Pex22p Mutant I Structure Length = 172		1e-06
2h2y_A	136	Crystal Structure Of Ubiquitin Conjugating Enzyme E		2e-06
2y9p_A	172	Pex4p-Pex22p Mutant Ii Structure Length = 172		3e-06
2y9m_A	172	Pex4p-Pex22p Structure Length = 172		3e-06

>pdb|1KPS|A Chain A, Structural Basis For E2-Mediated Sumo Conjugation Revealed By A Complex Between Ubiquitin Conjugating Enzyme Ubc9 And Rangap1 Length = 159

Iteration: 1
 Score =  216 bits (550), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 1   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 60
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+L
Sbjct: 61  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 120
Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           L++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 121 LNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 158

>pdb|2O25|C Chain C, Ubiquitin-Conjugating Enzyme E2-25 Kda Complexed With Sumo-1- Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  216 bits (549), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 2   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 61
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+L
Sbjct: 62  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 121
Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           L++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 LNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159

>pdb|1U9A|A Chain A, Human Ubiquitin-Conjugating Enzyme Ubc9 Length = 160

Iteration: 1
 Score =  216 bits (549), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 100/159 (62%), Positives = 122/159 (76%), Gaps = 1/159 (0%)
Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           ++  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F
Sbjct: 1   LNMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 60
Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+
Sbjct: 61  KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 120
Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           LL++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 121 LLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 159

>pdb|3A4S|A Chain A, The Crystal Structure Of The Sld2:ubc9 Complex Length = 163

Iteration: 1
 Score =  215 bits (548), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 101/158 (63%), Positives = 121/158 (76%), Gaps = 1/158 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S  GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F 
Sbjct: 5   SMSGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFK 64
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+L
Sbjct: 65  LRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQEL 124
Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           L++PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 125 LNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 162

>pdb|1Z5S|A Chain A, Crystal Structure Of A Complex Between Ubc9, Sumo-1, Rangap1 And Nup358RANBP2 Length = 158

Iteration: 1
 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

>pdb|2GRN|A Chain A, Crystal Structure Of Human Rangap1-Ubc9 Length = 161

Iteration: 1
 Score =  215 bits (547), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 100/156 (64%), Positives = 120/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160

>pdb|2GRR|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127s Length = 161

Iteration: 1
 Score =  213 bits (541), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN   PAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 125 EPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160

>pdb|2GRO|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-N85q Length = 161

Iteration: 1
 Score =  213 bits (541), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHP VYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPQVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160

>pdb|2GRQ|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-D127a Length = 161

Iteration: 1
 Score =  212 bits (540), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN   PAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 125 EPNIQAPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160

>pdb|2GRP|A Chain A, Crystal Structure Of Human Rangap1-Ubc9-Y87a Length = 161

Iteration: 1
 Score =  212 bits (539), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 5   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 64
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNV PSGTVCLSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 65  MLFKDDYPSSPPKCKFEPPLFHPNVAPSGTVCLSILEEDKDWRPAITIKQILLGIQELLN 124
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 125 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160

>pdb|2UYZ|A Chain A, Non-Covalent Complex Between Ubc9 And Sumo1 Length = 158

Iteration: 1
 Score =  211 bits (538), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 157

>pdb|3UIO|A Chain A, Complex Between Human Rangap1-Sumo2, Ubc9 And The Ir1 Domain From Ranbp2 Containing Ir2 Motif Ii Length = 158

Iteration: 1
 Score =  211 bits (537), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L 
Sbjct: 2   SGIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLR 61
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED  WRPAIT+KQIL+GIQ+LL+
Sbjct: 62  MLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVXLSILEEDKDWRPAITIKQILLGIQELLN 121
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           +PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 EPNIQDPAQAEAYTIYXQNRVEYEKRVRAQAKKFAP 157

>pdb|3RCZ|B Chain B, Rad60 Sld2 Ubc9 Complex Length = 163

Iteration: 1
 Score =  202 bits (515), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 93/156 (59%), Positives = 119/156 (76%), Gaps = 1/156 (0%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
             + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG + LT
Sbjct: 8   SSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLT 67
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQDLLD
Sbjct: 68  MAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLD 127
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
            PN A PAQT+ Y +F +D  EY++RVR QA++  P
Sbjct: 128 DPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163

>pdb|3ONG|B Chain B, Crystal Structure Of Uba2ufd-ubc9: Insights Into E1-e2 Interactions In Sumo Pathways Length = 159

Iteration: 1
 Score =  201 bits (510), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 117/156 (75%), Gaps = 1/156 (0%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFP 60
           S   +   RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P
Sbjct: 2   SMSSLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYP 61
Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           +T+ +  +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QDL
Sbjct: 62  ITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDL 121
Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           LD PNP  PAQ   ++ F ++ AEY ++V  QAKQY
Sbjct: 122 LDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 157

>pdb|2GJD|A Chain A, Distinct Functional Domains Of Ubc9 Dictate Cell Survival And Resistance To Genotoxic Stress Length = 157

Iteration: 1
 Score =  200 bits (509), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 94/148 (63%), Positives = 115/148 (77%), Gaps = 1/148 (0%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED 68
           RL EERK WRK+HP GF AKP  K DGS++L  WE  IPGK GT+W GG +P+T+ +  +
Sbjct: 8   RLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNE 67
Query: 69  YPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QDLLD PNP  
Sbjct: 68  YPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNS 127
Query: 129 PAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PAQ   ++ F ++ AEY ++V  QAKQY
Sbjct: 128 PAQEPAWRSFSRNKAEYDKKVLLQAKQY 155

>pdb|2AAK|A Chain A, Ubiquitin Conjugating Enzyme From Arabidopsis Thaliana Length = 152

Iteration: 1
 Score =  124 bits (312), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 84/149 (56%), Gaps = 6/149 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F L+L FS
Sbjct: 5   ARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFKLSLQFS 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           EDYP+KPP  +F    FHPN+Y  G++CL IL   N W P   V  IL  IQ LL  PNP
Sbjct: 61  EDYPNKPPTVRFVSRMFHPNIYADGSICLDILQ--NQWSPIYDVAAILTSIQSLLCDPNP 118
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
             PA ++  +++ +   EY RRVR   +Q
Sbjct: 119 NSPANSEAARMYSESKREYNRRVRDVVEQ 147

>pdb|1Q34|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 163

Iteration: 1
 Score =  122 bits (305), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 89/149 (59%), Gaps = 6/149 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+
Sbjct: 5   SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP
Sbjct: 61  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPNP 118
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
             PA +   QL+ ++  EY++RV+Q  +Q
Sbjct: 119 NSPANSLAAQLYQENRREYEKRVQQIVEQ 147

>pdb|1Z3D|A Chain A, Protein Crystal Growth Improvement Leading To The 2.5a Crystallographic Structure Of Ubiquitin-Conjugating Enzyme (Ubc-1) From Caenorhabditis Elegans Length = 157

Iteration: 1
 Score =  121 bits (304), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 65/149 (43%), Positives = 89/149 (59%), Gaps = 6/149 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P T+D   N++ WE II G   T +E G F L+L F+
Sbjct: 8   SRRRLMRDFKKLQEDPPAGVSGAP-TED---NILTWEAIIFGPQETPFEDGTFKLSLEFT 63
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP
Sbjct: 64  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQ--NRWSPTYDVAAILTSIQSLLDEPNP 121
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
             PA +   QL+ ++  EY++RV+Q  +Q
Sbjct: 122 NSPANSLAAQLYQENRREYEKRVQQIVEQ 150

>pdb|1JAS|A Chain A, Hsubc2b Length = 152

Iteration: 1
 Score =  120 bits (300), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 62/149 (41%), Positives = 83/149 (55%), Gaps = 6/149 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G    P       N+M W  +I G  GT +E G F L + FS
Sbjct: 5   ARRRLMRDFKRLQEDPPVGVSGAPSEN----NIMQWNAVIFGPEGTPFEDGTFKLVIEFS 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  +F    FHPNVY  G++CL IL   N W P   V  IL  IQ LLD+PNP
Sbjct: 61  EEYPNKPPTVRFLSKMFHPNVYADGSICLDIL--QNRWSPTYDVSSILTSIQSLLDEPNP 118
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
             PA +   QL+ ++  EY++RV    +Q
Sbjct: 119 NSPANSQAAQLYQENKREYEKRVSAIVEQ 147

>pdb|1AYZ|A Chain A, Crystal Structure Of The Saccharomyces Cerevisiae Ubiquitin- Conjugating Enzyme Rad6 (Ubc2) At 2.6a Resolution Length = 169

Iteration: 1
 Score =  116 bits (290), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 60/149 (40%), Positives = 81/149 (54%), Gaps = 6/149 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F 
Sbjct: 5   ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 60
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY +G +CL IL   N W P   V  IL  IQ L + PNP
Sbjct: 61  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQ--NRWTPTYDVASILTSIQSLFNDPNP 118
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           A PA  +   LF    ++Y +RV++  ++
Sbjct: 119 ASPANVEAATLFKDHKSQYVKRVKETVEK 147

>pdb|2C4P|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5a Length = 165

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 58/160 (36%), Positives = 85/160 (53%), Gaps = 10/160 (6%)
Query: 1   MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
           MSG    G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++G
Sbjct: 10  MSGLVPRGSMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQG 65
Query: 57  GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
           G F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ 
Sbjct: 66  GVFFLTVHFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLS 123
Query: 117 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           I  LL  PNP DP   D  Q++  D  +Y R  R+  ++Y
Sbjct: 124 ICSLLCDPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 163

>pdb|2YHO|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent Degradation Of The Ldl Receptor Length = 149

Iteration: 1
 Score =  102 bits (255), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 55/153 (35%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTV 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   D  Q++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 147

>pdb|2OXQ|A Chain A, Structure Of The Ubch5 :chip U-Box Complex Length = 152

Iteration: 1
 Score =  102 bits (253), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/153 (35%), Positives = 83/153 (54%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E +  +++ P    A P   D    L  W+  I G + + ++GG F LT+
Sbjct: 4   GSMALKRIQKELQDLQRDPPAQCSAGPVGDD----LFHWQATIMGPSDSPYQGGVFFLTI 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+TV ++L+ I  LL  
Sbjct: 60  HFPTDYPFKPPKVAFTTKIYHPNINSNGSICLDILRSQ--WSPALTVSKVLLSICSLLCD 117
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   D   ++  D  +Y R  R+  ++Y
Sbjct: 118 PNPDDPLVPDIAHIYKSDKEKYNRLAREWTQKY 150

>pdb|2UCZ|A Chain A, Ubiquitin Conjugating Enzyme (Ubc7) From Saccharomyces Cerevisiae Length = 165

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 53/155 (34%), Positives = 84/155 (54%), Gaps = 14/155 (9%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F 
Sbjct: 5   AQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEFP 61
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILV 115
           +DYP  PPK  F     HPN+YP+G VC+SIL+            +  W P  +V++IL+
Sbjct: 62  KDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILL 121
Query: 116 GIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 150
            +  +L +PN    A  D   L+  +  E++R+V+
Sbjct: 122 SVMSMLSEPNIESGANIDACILWRDNRPEFERQVK 156

>pdb|3OJ4|A Chain A, Crystal Structure Of The A20 Znf4, Ubiquitin And Ubch5a Complex Length = 153

Iteration: 1
 Score =  100 bits (249), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 82/151 (54%), Gaps = 6/151 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT++F
Sbjct: 7   MALKRIQKELSDLQRDPPAHCSAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLTVHF 62
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL   + W PA+TV ++L+ I  LL  PN
Sbjct: 63  PTDYPFKPPKIAFTTKIYHPNINSNGSICLDILR--SQWSPALTVSKVLLSICSLLCDPN 120
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   D  Q++  D  +Y R  R+  ++Y
Sbjct: 121 PDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151

>pdb|2CYX|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G2 (Ube2g2UBC7) Length = 170

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 7   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 63
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 64  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 123
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           IL+ +  +L +PN    A  D  +++  D  ++ +  +Q  ++
Sbjct: 124 ILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 166

>pdb|4AP4|B Chain B, Rnf4 - Ubch5a - Ubiquitin Heterotrimeric Complex Length = 153

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            G +A  R+ +E    +++ P    A P   D    L  W+  I G   + ++GG F LT
Sbjct: 4   SGSMALKRIQKELSDLQRDPPAHCRAGPVGDD----LFHWQATIMGPPDSAYQGGVFFLT 59
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+TV ++L+ I  LL 
Sbjct: 60  VHFPTDYPFKPPKIAFTTKIYHPNINSNGSIKLDILRSQ--WSPALTVSKVLLSICSLLC 117
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            PNP DP   D  Q++  D  +Y R  R+  ++Y
Sbjct: 118 DPNPDDPLVPDIAQIYKSDKEKYNRHAREWTQKY 151

>pdb|3H8K|A Chain A, Crystal Structure Of Ube2g2 Complxed With The G2br Domain Of Gp78 At 1.8-A Resolution Length = 164

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 1   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 57
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 58  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 117
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           IL+ +  +L +PN    A  D  +++  D  ++ +  +Q  ++
Sbjct: 118 ILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 160

>pdb|3FSH|A Chain A, Crystal Structure Of The Ubiquitin Conjugating Enzyme Ube2g2 Bound To The G2br Domain Of Ubiquitin Ligase Gp78 Length = 168

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 5   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 61
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSIL-----------NEDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL           +    W P  +V++
Sbjct: 62  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 121
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           IL+ +  +L +PN    A  D  +++  D  ++ +  +Q  ++
Sbjct: 122 ILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 164

>pdb|2KLY|A Chain A, Solution Structure Of Human Ubiquitin Conjugating Enzyme Ube2g2 Length = 167

Iteration: 1
 Score = 97.4 bits (241), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L
Sbjct: 4   AGTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAIL 60
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-----------EDNGWRPAITVKQ 112
            F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++
Sbjct: 61  SFPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEK 120
Query: 113 ILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           IL+ +  +L +PN    A  D  +++  D  ++ +  +Q  ++
Sbjct: 121 ILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQK 163

>pdb|2C4O|B Chain B, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 54/160 (33%), Positives = 84/160 (52%), Gaps = 10/160 (6%)
Query: 1   MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
           MSG    G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++G
Sbjct: 10  MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQG 65
Query: 57  GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
           G F LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ 
Sbjct: 66  GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 124 ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163

>pdb|2ESK|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b, Wild-Type Length = 149

Iteration: 1
 Score = 96.7 bits (239), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147

>pdb|4II2|C Chain C, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1) In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg Length = 163

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 78/151 (51%), Gaps = 6/151 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+  E     K+ P    A P   D    L  W+  I G   + + GG F L+++F
Sbjct: 1   MALKRINRELADLGKDPPSSSSAGPVGDD----LFHWQATIMGPADSPYAGGVFFLSIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL +   W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVNFTTRIYHPNINSNGSICLDILRDQ--WSPALTISKVLLSISSLLTDPN 114
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +   ++  D + Y+   R+  ++Y
Sbjct: 115 PDDPLVPEIAHVYKTDRSRYELSAREWTRKY 145

>pdb|3EB6|B Chain B, Structure Of The Ciap2 Ring Domain Bound To Ubch5b Length = 149

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147

>pdb|3TGD|A Chain A, Crystal Structure Of The Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Length = 152

Iteration: 1
 Score = 96.3 bits (238), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 4   GSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 60  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 117
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 118 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 150

>pdb|2ESQ|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ser94gly Length = 149

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/153 (33%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WGPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147

>pdb|2AYV|A Chain A, Crystal Structure Of A Putative Ubiquitin-Conjugating Enzyme E2 From Toxoplasma Gondii Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 75/150 (50%), Gaps = 6/150 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     K+ P    A P   D    +  W+  I G   + + GG F L ++F 
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGDD----MFHWQATIMGPEDSPYSGGVFFLNIHFP 77
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+   G +CL IL +   W PA+T+ ++L+ I  LL  PNP
Sbjct: 78  SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKDQ--WSPALTISKVLLSISSLLTDPNP 135
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   +   L+  D   Y +  R+ +++Y
Sbjct: 136 DDPLVPEIAHLYKSDRMRYDQTAREWSQKY 165

>pdb|3RPG|A Chain A, Bmi1RING1B-Ubch5c Complex Structure Length = 149

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 51/152 (33%), Positives = 80/152 (52%), Gaps = 6/152 (3%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++
Sbjct: 2   GSALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIH 57
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
           F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  P
Sbjct: 58  FPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDP 115
Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           NP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 116 NPDDPLVPEIARIYKTDRDKYNRISREWTQKY 147

>pdb|2ESP|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile88ala Length = 149

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL  L     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDALRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147

>pdb|2ESO|A Chain A, Human Ubiquitin-Conjugating Enzyme (E2) Ubch5b Mutant Ile37ala Length = 149

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+    G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATAMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147

>pdb|3L1Z|A Chain A, Crystal Structure Of The U-Box Domain Of Human E4b Ubiquitin Ligase In Complex With Ubch5c E2 Ubiquitin Conjugating Enzyme Length = 157

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 9   NSMALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 65  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 122
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 123 PNPDDPLVPEIARIYKTDRDKYNRISREWTQKY 155

>pdb|3L1Y|A Chain A, Crystal Structure Of Human Ubc4 E2 Conjugating Enzyme Length = 157

Iteration: 1
 Score = 94.4 bits (233), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
             +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 9   NSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 64
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  
Sbjct: 65  HFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCD 122
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 123 PNPDDPLVPEIARIYQTDREKYNRIAREWTQKY 155

>pdb|1X23|A Chain A, Crystal Structure Of Ubch5c Length = 155

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 9   MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 64
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PN
Sbjct: 65  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPN 122
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 123 PDDPLVPEIARIYKTDRDKYNRISREWTQKY 153

>pdb|1UR6|A Chain A, Nmr Based Structural Model Of The Ubch5b-Cnot4 Complex Length = 147

Iteration: 1
 Score = 93.6 bits (231), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 50/151 (33%), Positives = 80/151 (52%), Gaps = 6/151 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLCDPN 114
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PDDPLVPEIARIYKTDREKYNRIAREWTQKY 145

>pdb|1Z2U|A Chain A, The 1.1a Crystallographic Structure Of Ubiquitin- Conjugating Enzyme (Ubc-2) From Caenorhabditis Elegans: Functional And Evolutionary Significance Length = 150

Iteration: 1
 Score = 93.2 bits (230), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 81/154 (52%), Gaps = 6/154 (3%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +   ++ P    A P   D    L  W+  I G   + ++GG F LT
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGDD----LFHWQATIMGPPESPYQGGVFFLT 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL 
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQ--WSPALTISKVLLSICSLLC 114
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            PNP DP   +  +++  D   Y +  R+  ++Y
Sbjct: 115 DPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 148

>pdb|2FUH|A Chain A, Solution Structure Of The Ubch5cUB NON-Covalent Complex Length = 146

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/150 (33%), Positives = 80/150 (53%), Gaps = 6/150 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F 
Sbjct: 1   ALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+  +G++CL IL   + W PA+T+ ++L+ I  LL  PNP
Sbjct: 57  TDYPFKPPKVAFTTRIYHPNINSNGSICLDILR--SQWSPALTISKVLLSICSLLCDPNP 114
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 DDPLVPEIARIYKTDRDKYNRISREWTQKY 144

>pdb|3A33|A Chain A, Ubch5b~ubiquitin Conjugate Length = 150

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 50/154 (32%), Positives = 80/154 (51%), Gaps = 6/154 (3%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
            G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT
Sbjct: 1   AGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLT 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ I  LL 
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKVLLSICSLLC 114
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 DPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 148

>pdb|3E95|A Chain A, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 151

Iteration: 1
 Score = 92.4 bits (228), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E YP +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSP 113
Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            P DP  +   + F QD  + +   RQ  K Y
Sbjct: 114 EPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145

>pdb|1Y6L|A Chain A, Human Ubiquitin Conjugating Enzyme E2e2 Length = 149

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           N+  W   I G  G+ +EGG F L + FS DYP KPPK  F    +H N+   G +CL I
Sbjct: 31  NIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHCNINSQGVICLDI 90
Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           L ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct: 91  LKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 147

>pdb|2C4O|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme Ubch5b Length = 165

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 53/160 (33%), Positives = 83/160 (51%), Gaps = 10/160 (6%)
Query: 1   MSG----GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEG 56
           MSG    G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++G
Sbjct: 10  MSGLVPRGSMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQG 65
Query: 57  GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVG 116
           G F LT++F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ 
Sbjct: 66  GVFFLTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSIXLDILRSQ--WSPALTISKVLLS 123
Query: 117 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           I  LL  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 124 ICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163

>pdb|2R0J|A Chain A, Crystal Structure Of The Putative Ubiquitin Conjugating Enzyme, Pfe1350c, From Plasmodium Falciparum Length = 149

Iteration: 1
 Score = 92.0 bits (227), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 7/152 (4%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E YP +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSP 113
Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            P DP  +   + F QD  + +   RQ  K Y
Sbjct: 114 EPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145

>pdb|4DDG|A Chain A, Crystal Structure Of Human Otub1UBCH5B~UBUB Length = 399

Iteration: 1
 Score = 91.3 bits (225), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 81/153 (52%), Gaps = 6/153 (3%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTI 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++ L IL   + W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILR--SQWSPALTISKVLLSICSLLCD 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 147

>pdb|3BZH|A Chain A, Crystal Structure Of Human Ubiquitin-Conjugating Enzyme E2 E1 Length = 194

Iteration: 1
 Score = 89.7 bits (221), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 2/119 (1%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           N+  W   I G  G+ +EGG F L + F+ +YP KPPK  F    +H N+   G +CL I
Sbjct: 76  NIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDI 135
Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           L ++  W PA+T+ ++L+ I  LL   NPADP        ++ + AE+ R  RQ  K+Y
Sbjct: 136 LKDN--WSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRY 192

>pdb|3UGB|A Chain A, Ubch5c~ubiquitin Conjugate Length = 147

Iteration: 1
 Score = 89.7 bits (221), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 49/151 (32%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRINKELSDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALTISKVLLSICSLLCDPN 114
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PDDPLVPEIARIYKTDRDKYNRISREWTQKY 145

>pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme Length = 148

Iteration: 1
 Score = 89.4 bits (220), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 76/150 (50%), Gaps = 6/150 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E     ++ P    A P   D    L  W+  I G   + + GG F L+++F 
Sbjct: 3   SSKRIAKELSDLERDPPTSCSAGPVGDD----LYHWQASIMGPADSPYAGGVFFLSIHFP 58
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL   NP
Sbjct: 59  TDYPFKPPKISFTTKIYHPNINANGNICLDILKDQ--WSPALTLSKVLLSICSLLTDANP 116
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   +   ++  D  +Y+   R+  K+Y
Sbjct: 117 DDPLVPEIAHIYKTDRPKYEATAREWTKKY 146

>pdb|1PZV|A Chain A, Crystal Structures Of Two Ubc (E2) Enzymes Of The Ubiquitin- Conjugating System In Caenorhabditis Elegans Length = 164

Iteration: 1
 Score = 88.2 bits (217), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 11/125 (8%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE- 100
           WE ++ G   T +EGG+F   L F  DYP KPPK KF    +HPN+   G VC+SIL++ 
Sbjct: 36  WEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNIDKEGNVCISILHDP 95
Query: 101 ----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 150
                     +  W P  TV+ IL+ +  +L  PN   PA  D  ++  ++ AE+K++V 
Sbjct: 96  GDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVA 155
Query: 151 QQAKQ 155
           Q  ++
Sbjct: 156 QCVRR 160

>pdb|3JVZ|A Chain A, E2~ubiquitin-Hect Length = 146

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 48/150 (32%), Positives = 77/150 (51%), Gaps = 6/150 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F 
Sbjct: 1   ASKRIHKELNDLARDPPAQCSAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHFP 56
Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+  +G++ L IL     W PA+ + ++L+ I  LL  PNP
Sbjct: 57  TDYPFKPPKVAFTTRIYHPNINSNGSISLDILRSQ--WSPALKISKVLLSICSLLCDPNP 114
Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 DDPLVPEIARIYKTDREKYNRIAREWTQKY 144

>pdb|4AUQ|A Chain A, Structure Of Birc7-Ubch5b-Ub Complex. Length = 147

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 6/151 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E     ++ P    A P   D    +  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIHKELNDLARDPPAQCRAGPVGDD----MFHWQATIMGPNDSPYQGGVFFLTIHF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HP +  +G++ L IL   + W PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPAINSNGSISLDILR--SQWSPALTISKVLLSICSLLCDPN 114
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 115 PDDPLVPEIARIYKTDREKYNRIAREWTQKY 145

>pdb|1JAT|A Chain A, Mms2UBC13 UBIQUITIN CONJUGATING ENZYME COMPLEX Length = 155

Iteration: 1
 Score = 86.3 bits (212), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 9   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 64
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G +CL +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 65  PMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 122
Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              D  + +I++    K + R+  K Y
Sbjct: 123 LANDVAEDWIKNEQGAKAKAREWTKLY 149

>pdb|4GPR|A Chain A, Crystal Structure Of Ehubc5, A Ubiquitin Conjugating Enzyme From Entamoeba Histolytica Length = 151

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 77/154 (50%), Gaps = 6/154 (3%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
              +A  R+ +E +  +++ P    A P   D    +  W   I G   + ++GG F L 
Sbjct: 1   SAAMAMRRIQKELREIQQDPPCNCSAGPVGDD----IFHWTATITGPDDSPYQGGLFFLD 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP K P+  F    +HPN+  +G +CL IL +   W PA+T+ ++L+ I  LL 
Sbjct: 57  VHFPVDYPFKAPRVTFMTKVYHPNINKNGVICLDILKDQ--WSPALTLSRVLLSISSLLT 114
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            PNP+DP   +   +   +  +++   R+  + Y
Sbjct: 115 DPNPSDPLDPEVANVLRANKKQFEDTAREWTRMY 148

>pdb|1JBB|A Chain A, Ubiquitin Conjugating Enzyme, Ubc13 Length = 153

Iteration: 1
 Score = 85.9 bits (211), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 47/147 (31%), Positives = 74/147 (50%), Gaps = 6/147 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G +CL +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRICLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              D  + +I++    K + R+  K Y
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLY 147

>pdb|2PWQ|A Chain A, Crystal Structure Of A Putative Ubiquitin Conjugating Enzyme From Plasmodium Yoelii Length = 216

Iteration: 1
 Score = 84.3 bits (207), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 42/120 (35%), Positives = 63/120 (52%), Gaps = 3/120 (2%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLS 96
           N   W   I G  GT +EGG+F L +    DYP  PPK KF    +HPN+   +G +CL 
Sbjct: 51  NFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLD 110
Query: 97  ILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +L   N W PA+T++  L+ IQ LL  P P DP   +  +++ ++ A + +      K +
Sbjct: 111 VLK--NEWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTF 168

>pdb|2AWF|A Chain A, Structure Of Human Ubiquitin-Conjugating Enzyme E2 G1 Length = 172

Iteration: 1
 Score = 84.0 bits (206), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 57/160 (35%), Positives = 80/160 (50%), Gaps = 17/160 (10%)
Query: 4   GGIARGRLTEERK--AWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           G + RG L   R+     KN   GF A     +   +L  WE +I G   T +EGG F  
Sbjct: 13  GLVPRGSLLLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKA 69
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNE-----------DNGWRPAITV 110
            L F +DYP +PPK KF    +HPNV  +G VC+SIL+E           +  W P  TV
Sbjct: 70  HLTFPKDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTV 129
Query: 111 KQILVGIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRV 149
           + I++ +  +L  PN   PA  D  + + +D   E+KR+V
Sbjct: 130 ETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKV 169

>pdb|4EPO|B Chain B, Crystal Structure Of Rnf8 Bound To The Ubc13MMS2 HETERODIMER Length = 155

Iteration: 1
 Score = 83.6 bits (205), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 49/155 (31%), Positives = 76/155 (49%), Gaps = 7/155 (4%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           S  G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L
Sbjct: 5   SMAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 59
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
            L+  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL
Sbjct: 60  ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALL 117
Query: 122 DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             PNP DP   D  + +  + A+     R   + Y
Sbjct: 118 SAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 152

>pdb|2C2V|B Chain B, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 154

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 7/154 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
             G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L 
Sbjct: 3   SAGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLE 57
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           L+  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL 
Sbjct: 58  LFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLS 115
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            PNP DP   D  + +  + A+     R   + Y
Sbjct: 116 APNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149

>pdb|3HCT|B Chain B, Crystal Structure Of Traf6 In Complex With Ubc13 In The P1 Space Group Length = 155

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L
Sbjct: 5   AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 59
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  
Sbjct: 60  FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSA 117
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   D  + +  + A+     R   + Y
Sbjct: 118 PNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 150

>pdb|1J7D|B Chain B, Crystal Structure Of Hmms2-Hubc13 Length = 152

Iteration: 1
 Score = 82.8 bits (203), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 48/153 (31%), Positives = 75/153 (49%), Gaps = 7/153 (4%)
Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
            G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L
Sbjct: 2   AGLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLEL 56
Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  
Sbjct: 57  FLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSA 114
Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           PNP DP   D  + +  + A+     R   + Y
Sbjct: 115 PNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 147

>pdb|2GMI|A Chain A, Mms2UBC13~UBIQUITIN Length = 152

Iteration: 1
 Score = 82.8 bits (203), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G + L +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRISLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              D  + +I++    K + R+  K Y
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLY 147

>pdb|3VON|C Chain C, Crystalstructure Of The Ubiquitin Protease Length = 148

Iteration: 1
 Score = 82.0 bits (201), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 48/152 (31%), Positives = 75/152 (49%), Gaps = 7/152 (4%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G+ R  + E ++   +  P G  A+P+      N   +  +I G   + +EGG F L L+
Sbjct: 1   GLPRRIIKETQRLLAEPVP-GIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 55
Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E+YP   PK +F    +HPNV   G +CL IL   + W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILK--DKWSPALQIRTVLLSIQALLSAP 113
Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           NP DP   D  + +  + A+     R   + Y
Sbjct: 114 NPDDPLANDVAEQWKTNEAQAIETARAWTRLY 145

>pdb|2F4Z|A Chain A, Toxoplasma Gondii Ubiquitin Conjugating Enzyme Tgtwinscan_2721- E2 Domain Length = 193

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 39/101 (38%), Positives = 57/101 (56%), Gaps = 3/101 (2%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNE 100
           W   I G  GT +EGG+F L +    DYP  PPK KF    +HPN+   +G +CL IL  
Sbjct: 77  WRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNPPKMKFVTKIWHPNISSQTGAICLDILKH 136
Query: 101 DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD 141
           +  W PA+T++  L+ IQ +L  P P DP   +  ++ I++
Sbjct: 137 E--WSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIEN 175

>pdb|2E2C|A Chain A, E2-C, An Ubiquitin Conjugating Enzyme Required For The Destruction Of Mitotic Cyclins Length = 156

Iteration: 1
 Score = 81.6 bits (200), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 52/145 (35%), Positives = 73/145 (50%), Gaps = 7/145 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +    +   G  A P   DG  NL  W   + G   T +E   + LTL F  DY
Sbjct: 13  RLQQELRTLLMSGDPGITAFP---DGD-NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASP 126
Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAK 154
                  ++  +  EYK+ + ++ K
Sbjct: 127 LNAQAADMW-SNQTEYKKVLHEKYK 150

>pdb|1YRV|A Chain A, Novel Ubiquitin-Conjugating Enzyme Length = 169

Iteration: 1
 Score = 80.9 bits (198), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 46/150 (30%), Positives = 75/150 (50%), Gaps = 5/150 (3%)
Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           S  G A   L  +    ++N+  G  AKP ++D    +M WE  I G   + W+G  F L
Sbjct: 19  SMHGRAYLLLHRDFCDLKENNYKGITAKPVSED----MMEWEVEIEGLQNSVWQGLVFQL 74
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           T++F+ +Y   PP  KF    FHPNV P +G  C+  L+    W    T+  IL+ +Q +
Sbjct: 75  TIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVM 134
Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVR 150
           L  P   +P   +  ++ ++D + Y+  +R
Sbjct: 135 LSNPVLENPVNLEAARILVKDESLYRTILR 164

>pdb|4FH1|A Chain A, S. Cerevisiae Ubc13-N79a Length = 153

Iteration: 1
 Score = 79.7 bits (195), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 72/147 (48%), Gaps = 6/147 (4%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62
Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HP +   G + L +L     W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPAIDRLGRISLDVLK--TNWSPALQIRTVLLSIQALLASPNPNDP 120
Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              D  + +I++    K + R+  K Y
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLY 147

>pdb|1ZDN|A Chain A, Ubiquitin-Conjugating Enzyme E2s Length = 158

Iteration: 1
 Score = 79.3 bits (194), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 6/128 (4%)
Query: 23  PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF 82
           P G    P  +D    L   +  I G  GT + GG F + L   +D+P+ PPK  F    
Sbjct: 30  PDGIKVFPNEED----LTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKI 85
Query: 83  FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDP 142
           FHPNV  +G +C+++L  D  W   + ++ +L+ I+ LL  PNP      +  +L +++ 
Sbjct: 86  FHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENY 143
Query: 143 AEYKRRVR 150
            EY  R R
Sbjct: 144 EEYAARAR 151

>pdb|2OB4|A Chain A, Human Ubiquitin-Conjugating Enzyme Cdc34 Length = 180

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SI
Sbjct: 33  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 92
Query: 98  LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138
           L+               W P   V+ IL+ +  LL++PN   PA  D   ++
Sbjct: 93  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 144

>pdb|1I7K|A Chain A, Crystal Structure Of Human Mitotic-Specific Ubiquitin- Conjugating Enzyme, Ubch10 Length = 179

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 53/152 (34%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 4   GGIARG----RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           GG ARG    RL +E      +   G  A PE    S NL  W   I G  GT +E   +
Sbjct: 24  GGAARGPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRY 79
Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            L+L F   YP   P  KF    +HPNV   G + L IL E   W     V+ IL+ IQ 
Sbjct: 80  KLSLEFPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQS 137
Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQ 151
           LL +PN   P  T   +L+ ++P  +K+ +++
Sbjct: 138 LLGEPNIDSPLNTHAAELW-KNPTAFKKYLQE 168

>pdb|3RZ3|A Chain A, Human Cdc34 E2 In Complex With Cc0651 Inhibitor Length = 183

Iteration: 1
 Score = 77.8 bits (190), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 41/112 (36%), Positives = 56/112 (50%), Gaps = 11/112 (9%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L  WE  I G   T +EGGYF   L F  DYP  PP  +F    +HPN+Y +G VC+SI
Sbjct: 36  DLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLTKMWHPNIYETGDVCISI 95
Query: 98  LN-----------EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF 138
           L+               W P   V+ IL+ +  LL++PN   PA  D   ++
Sbjct: 96  LHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMY 147

>pdb|1TTE|A Chain A, The Structure Of A Class Ii Ubiquitin-Conjugating Enzyme, Ubc1 Length = 215

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 3/101 (2%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
           G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P
Sbjct: 41  GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILR--NAWSP 98
Query: 107 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR 147
            IT+K  L+ +Q LL  P P DP   +  Q +++D   + +
Sbjct: 99  VITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNK 139

>pdb|1FXT|A Chain A, Structure Of A Conjugating Enzyme-Ubiquitin Thiolester Complex Length = 149

Iteration: 1
 Score = 77.4 bits (189), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/110 (35%), Positives = 58/110 (52%), Gaps = 3/110 (2%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRP 106
           G  GT +EGG F + +    +YP KPPK +F    +HPN+   +G +CL IL   N W P
Sbjct: 40  GPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPNISSVTGAICLDILK--NAWSP 97
Query: 107 AITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            IT+K  L+ +Q LL  P P DP   +  Q +++D   + +      + Y
Sbjct: 98  VITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLY 147

>pdb|1YH2|A Chain A, Ubiquitin-Conjugating Enzyme Hspc150 Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/113 (31%), Positives = 58/113 (51%), Gaps = 2/113 (1%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNG 103
           I G   T +E G F L +   E YP +PP+ +F    +HPN+  +G +CL +L       
Sbjct: 40  ILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGA 99
Query: 104 WRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           WRP++ +  +L  IQ L+ +PNP DP   D    F  +   + +  RQ  +++
Sbjct: 100 WRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152

>pdb|3O2U|A Chain A, S. Cerevisiae Ubc12 Length = 190

Iteration: 1
 Score = 73.9 bits (180), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/97 (38%), Positives = 52/97 (53%), Gaps = 2/97 (2%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
           +  G     L F+E YP +PPK    +  FHPN+   G VCL+IL ED  W PA+ ++ I
Sbjct: 77  YNYGSINFNLDFNEVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSI 134
Query: 114 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR 150
           + G+  L  +PNP DP   D  +L  +   E+   VR
Sbjct: 135 ITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVR 171

>pdb|3SQV|C Chain C, Crystal Structure Of E. Coli O157:h7 E3 Ubiquitin Ligase, Nlel, With A Human E2, Ubch7 Length = 156

Iteration: 1
 Score = 73.2 bits (178), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 43/155 (27%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYFPL 61
           G   A  RL +E +  RK     F      +    NL+ W+  I+P      ++ G F +
Sbjct: 1   GSMAASRRLMKELEEIRKCGMKNFR---NIQVDEANLLTWQGLIVPD--NPPYDKGAFRI 55
Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
            + F  +YP KPPK  F    +HPN+   G VCL +++ +N W+PA    Q++  +  L+
Sbjct: 56  EINFPAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALV 114
Query: 122 DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           + P P  P + D  + + +D  ++ +   +  K+Y
Sbjct: 115 NDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 149

>pdb|2ONU|A Chain A, Plasmodium Falciparum Ubiquitin Conjugating Enzyme Pf10_0330, Putative Homologue Of Human Ube2h Length = 152

Iteration: 1
 Score = 73.2 bits (178), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 38/117 (32%), Positives = 62/117 (52%), Gaps = 4/117 (3%)
Query: 42  WECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNE 100
           ++ +  G  GT +EGG + + +   +DYP   P   F     HPNV   SG+VCL ++N+
Sbjct: 31  FDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPNVDEASGSVCLDVINQ 90
Query: 101 DNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              W P  ++  +  V +  LL  PNP+DP  +D   L ++D   Y+ +V++  K Y
Sbjct: 91  --TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLY 145

>pdb|1WZV|A Chain A, Crystal Structure Of Ubch8 Length = 155

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 75/149 (50%), Gaps = 5/149 (3%)
Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +  +K  P  ++    + D   N+++W  ++       +    F L 
Sbjct: 1   GSHMASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLR 56
Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F  +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L++
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVN 115
Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQ 151
           +PN  +P + D   L  Q+P  +++   +
Sbjct: 116 RPNIREPLRMDLADLLTQNPELFRKNAEE 144

>pdb|1C4Z|D Chain D, Structure Of E6ap: Insights Into Ubiquitination Pathway Length = 154

Iteration: 1
 Score = 71.6 bits (174), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 74/151 (49%), Gaps = 7/151 (4%)
Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWE-CIIPGKTGTDWEGGYFPLTLYF 65
           A  RL +E +  RK     F      +    NL+ W+  I+P      ++ G F + + F
Sbjct: 3   ASRRLMKELEEIRKCGMKNFR---NIQVDEANLLTWQGLIVPD--NPPYDKGAFRIEINF 57
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             +YP KPPK  F    +HPN+   G VCL +++ +N W+PA    Q++  +  L++ P 
Sbjct: 58  PAEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALVNDPQ 116
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P  P + D  + + +D  ++ +   +  K+Y
Sbjct: 117 PEHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147

>pdb|1Y8X|A Chain A, Structural Basis For Recruitment Of Ubc12 By An E2-Binding Domain In Nedd8's E1 Length = 160

Iteration: 1
 Score = 70.9 bits (172), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/129 (30%), Positives = 68/129 (52%), Gaps = 7/129 (5%)
Query: 30  PETKDGSV----NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP 85
           P+T D S     +L+ ++ +I    G  ++ G F  +    + YP  PPK K     +HP
Sbjct: 21  PKTCDISFSDPDDLLNFKLVICPDEGF-YKSGKFVFSFKVGQGYPHDPPKVKCETXVYHP 79
Query: 86  NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEY 145
           N+   G VCL+IL ED  W+P +T+  I+ G+Q L  +PNP DP   +  ++   +   +
Sbjct: 80  NIDLEGNVCLNILRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLF 137
Query: 146 KRRVRQQAK 154
           ++ V++  +
Sbjct: 138 EQNVQRSXR 146

>pdb|2Z5D|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 H Length = 179

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/111 (33%), Positives = 58/111 (52%), Gaps = 4/111 (3%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 106
           G  GT +EGG + + +   + YP K P   F    FHPN+   SGTVCL ++N+   W  
Sbjct: 59  GPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTA 116
Query: 107 AITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              +  I    +  LL  PNP DP   D   +++  P EYK+++++  ++Y
Sbjct: 117 LYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167

>pdb|2KJH|A Chain A, Nmr Based Structural Model Of The Ubch8-Ubiquitin Complex Length = 152

Iteration: 1
 Score = 68.9 bits (167), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 74/146 (50%), Gaps = 5/146 (3%)
Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E +  +K  P  ++    + D   N+++W  ++       +    F L + F
Sbjct: 1   MASMRVVKELEDLQKKPP-PYLRNLSSDDA--NVLVWHALL-LPDQPPYHLKAFNLRISF 56
Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L+++PN
Sbjct: 57  PPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVNRPN 115
Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQ 151
             +P + D   L  Q+P  +++   +
Sbjct: 116 IREPLRMDLADLLTQNPELFRKNAEE 141

>pdb|2NVU|C Chain C, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A Trapped Ubiquitin-Like Protein Activation Complex Length = 180

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
           ++ G F  +    + YP  PPK K     +HPN+   G V L+IL ED  W+P +T+  I
Sbjct: 68  YKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSI 125
Query: 114 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 154
           + G+Q L  +PNP DP   +  ++   +   +++ V++  +
Sbjct: 126 IYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMR 166

>pdb|2A7L|A Chain A, Structure Of The Human Hypothetical Ubiquitin-Conjugating Enzyme, Loc55284 Length = 136

Iteration: 1
 Score = 63.9 bits (154), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E  A + + P G     ++   S+    W   + G  GT +EG  F L   FS  Y
Sbjct: 26  RLQKELLALQNDPPPGMTLNEKSVQNSITQ--WIVDMEGAPGTLYEGEKFQLLFKFSSRY 83
Query: 70  PSKPPKCKFPQGFF--HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           P   P+  F       HP+VY +G +CLSIL ED  W PA++V+ + + I  +L 
Sbjct: 84  PFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISMLS 136

>pdb|3FN1|B Chain B, E2-Ring Expansion Of The Nedd8 Cascade Confers Specificity To Cullin Modification Length = 167

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
           ++GG F       + Y   PPK K     +HPN+  +G +CLS+L E +    GW P  T
Sbjct: 58  YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +K ++ G+  L  D  N  DP   +  +  ++D  +++ +V    K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165

>pdb|2EDI|A Chain A, Solution Structure Of The Uq_con Domain From Human Nedd8- Conjugating Enzyme Nce2 Length = 173

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 32/108 (29%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 54  WEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN----GWRPAIT 109
           ++GG F       + Y   PPK K     +HPN+  +G +CLS+L E +    GW P  T
Sbjct: 58  YQGGKFQFETEVPDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRT 117
Query: 110 VKQILVGIQDLL-DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +K ++ G+  L  D  N  DP   +  +  ++D  +++ +V    K+Y
Sbjct: 118 LKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165

>pdb|1YF9|A Chain A, Structural Analysis Of Leishmania Major Ubiquitin Conjugating Enzyme E2 Length = 171

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 51/111 (45%), Gaps = 4/111 (3%)
Query: 48  GKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRP 106
           G  GT +E G + L +    DYP K P   F     HPNV   SG+VCL ++N+   W P
Sbjct: 46  GPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLDVINQ--TWTP 103
Query: 107 AITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              ++ I  V +  LL  PNP+DP       L   D   +   +R+    +
Sbjct: 104 MYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 154

>pdb|2BEP|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2-25k Length = 159

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 49/159 (30%), Positives = 74/159 (46%), Gaps = 8/159 (5%)
Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECI--IPGKTGTDWEGGY 58
           M+   IA  R+  E K   K+      +K + K   V+    E    I G   T +EGG 
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEE---TSKNQIKVDLVDENFTELRGEIAGPPDTPYEGGR 59
Query: 59  FPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGI 117
           + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +
Sbjct: 60  YQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSL 117
Query: 118 QDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 118 QALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156

>pdb|3CEG|A Chain A, Crystal Structure Of The Ubc Domain Of Baculoviral Iap Repeat- Containing Protein 6 Length = 323

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 39  LMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-----FFHPNVYPSGTV 93
           L I + +I G   T +  G F   +YF +DYPS PP             F+PN+Y  G V
Sbjct: 109 LDIXKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLETTGGHSVRFNPNLYNDGKV 168
Query: 94  CLSILNEDNG-----WRPAI-TVKQILVGIQDLL 121
           CLSILN  +G     W P   +  Q+LV +Q L+
Sbjct: 169 CLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLI 202

>pdb|3K9P|A Chain A, The Crystal Structure Of E2-25k And Ubiquitin Complex Length = 217

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 60  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 117
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 118 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 169

>pdb|3K9O|A Chain A, The Crystal Structure Of E2-25k And Ubb+1 Complex Length = 201

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 44  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 101
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 102 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153

>pdb|1YLA|A Chain A, Ubiquitin-Conjugating Enzyme E2-25 Kda (Huntington Interacting Protein 2) Length = 202

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 45  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 102
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 103 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 154

>pdb|3E46|A Chain A, Crystal Structure Of Ubiquitin-Conjugating Enzyme E2-25kda (Huntington Interacting Protein 2) M172a Mutant Length = 253

Iteration: 1
 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 57/112 (50%), Gaps = 3/112 (2%)
Query: 46  IPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGW 104
           I G   T +EGG + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W
Sbjct: 96  IAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--W 153
Query: 105 RPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             A+T++ +L+ +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 154 AAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205

>pdb|3E95|C Chain C, Crystal Structure Of The Plasmodium Falciparum Ubiquitin Conjugating Enzyme Complex, Pfubc13-Pfuev1a Length = 158

Iteration: 1
 Score = 53.5 bits (127), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 11  LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
           L E  +  + N   G     E+ D  + L  W C I G+ GT +E   + LT++  ++YP
Sbjct: 31  LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 89
Query: 71  SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADP 129
             PP  KF        V   G V  + L+    W    T++ IL+ + Q++L   N   P
Sbjct: 90  DSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 149
Query: 130 AQTDG 134
              +G
Sbjct: 150 QPNEG 154

>pdb|2Q0V|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2, Putative, From Plasmodium Falciparum Length = 156

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 11  LTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYP 70
           L E  +  + N   G     E+ D  + L  W C I G+ GT +E   + LT++  ++YP
Sbjct: 27  LDELERGQKGNVSEGVSFGLESAD-DITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYP 85
Query: 71  SKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADP 129
             PP  KF        V   G V  + L+    W    T++ IL+ + Q++L   N   P
Sbjct: 86  DSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSANKRLP 145
Query: 130 AQTDG 134
              +G
Sbjct: 146 QPNEG 150

>pdb|2FO3|A Chain A, Plasmodium Vivax Ubiquitin Conjugating Enzyme E2 Length = 125

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLS 96
           N+ IW     G   T +    + L + F +DYP KPP   F Q    H +VY +G +CLS
Sbjct: 34  NIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLS 93
Query: 97  ILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +L +D  + P++++  +++ I  +L  
Sbjct: 94  LLGDD--YNPSLSISGLVLSIISMLSS 118

>pdb|2F4W|A Chain A, Human Ubiquitin-Conjugating Enzyme E2 J2 Length = 187

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/93 (32%), Positives = 45/93 (48%), Gaps = 7/93 (7%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKF--PQGFFHPNVYPSGTVCL 95
           N++ W  ++ G   T +EGGY+   L F  ++P KPP      P G F  N      +CL
Sbjct: 42  NILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRFKCNT----RLCL 97
Query: 96  SILN-EDNGWRPAITVKQILVGIQDLLDQPNPA 127
           SI +   + W PA +V  IL G+   + +  P 
Sbjct: 98  SITDFHPDTWNPAWSVSTILTGLLSFMVEKGPT 130

>pdb|2Y9O|A Chain A, Pex4p-Pex22p Mutant I Structure Length = 172

Iteration: 1
 Score = 48.9 bits (115), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHSNVKSATGEICL 105
Query: 96  SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           +IL  +  W P   +   +  +  LL +P    P   D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVSDSPLDVD 142

>pdb|2H2Y|A Chain A, Crystal Structure Of Ubiquitin Conjugating Enzyme E2 From Plasmodium Falciparum Length = 136

Iteration: 1
 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 7/120 (5%)
Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   + KN P              N+ IW     G   T +    + + + 
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74
Query: 65  FSEDYPSKPPKCKFPQG-FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F ++YP KPP   F Q    H +VY +G +CLS+L +D  + P++++  +++ I  +L  
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLSISGLILSIISMLSS 132

>pdb|2Y9P|A Chain A, Pex4p-Pex22p Mutant Ii Structure Length = 172

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 35/116 (30%), Positives = 52/116 (44%), Gaps = 4/116 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96  SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD-GYQLFIQDPAEYKRRVR 150
           +IL  +  W P   +   +  +  LL +P    P   D G  +   D + Y+  V+
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGAIIRCGDMSAYQGIVK 160

>pdb|2Y9M|A Chain A, Pex4p-Pex22p Structure Length = 172

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCL 95
           +L  WE II G + T +E   F + +     YP  PPK  F Q    H NV   +G +CL
Sbjct: 46  DLSKWEAIISGPSDTPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICL 105
Query: 96  SILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTD 133
           +IL  +  W P   +   +  +  LL +P    P   D
Sbjct: 106 NILKPEE-WTPVWDLLHCVHAVWRLLREPVCDSPLDVD 142

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	9e-87
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	1e-85
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	1e-84
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	1e-75
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	4e-74
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	1e-73
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	1e-72
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	1e-72
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	3e-61
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	2e-54
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	2e-53
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	3e-49
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	4e-48
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	5e-47
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	2e-46
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	3e-46
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	4e-46
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	5e-46
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	8e-46
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	9e-46
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	2e-45
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	5e-45
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	9e-45
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	2e-44
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	2e-44
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	2e-44
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	2e-44
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	3e-44
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	3e-44
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	3e-44
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	1e-43
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	2e-43
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	2e-43
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	2e-43
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	6e-43
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	3e-42
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	3e-42
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	7e-42
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	9e-42
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	1e-41
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	2e-41
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	4e-40
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	5e-40
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	2e-39
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	2e-39
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	2e-38
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	6e-37
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	2e-36
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	8e-34
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	4e-31
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	4e-04

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B Length = 157

 Score =  249 bits (639), Expect = 9e-87
 Identities = 95/157 (60%), Positives = 118/157 (75%), Gaps = 3/157 (1%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MS   +   RL EERK WRK+HP GF AKP +  DGS++L  WE  IPGK GT+W GG +
Sbjct: 1   MSS--LCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVY 58

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           P+T+ +  +YPSKPPK KFP GF+HPNVYPSGT+CLSILNED  WRPAIT+KQI++G+QD
Sbjct: 59  PITVEYPNEYPSKPPKVKFPAGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQD 118

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           LLD PNP  PAQ   ++ F ++ AEY ++V  QAKQY
Sbjct: 119 LLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQY 155

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} Length = 163

 Score =  247 bits (633), Expect = 1e-85
 Identities = 94/159 (59%), Positives = 120/159 (75%), Gaps = 3/159 (1%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
            S   + + RL EERK WR++HP GF AKP ++ DG ++LM W+  IPGK  T WEGG +
Sbjct: 7   HSS--LCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLY 64

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            LT+ F E+YP++PPKC+F    FHPNVYPSGTVCLSILNE+ GW+PAIT+KQIL+GIQD
Sbjct: 65  KLTMAFPEEYPTRPPKCRFTPPLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQD 124

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           LLD PN A PAQT+ Y +F +D  EY++RVR QA++  P
Sbjct: 125 LLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP 163

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A Length = 161

 Score =  244 bits (626), Expect = 1e-84
 Identities = 101/159 (63%), Positives = 121/159 (76%), Gaps = 3/159 (1%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYF 59
           MSG  IA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F
Sbjct: 4   MSG--IALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLF 61

Query: 60  PLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQD 119
            L + F +DYPS PPKCKF    FHPNVYPSGTVCLSIL ED  WRPAIT+KQIL+GIQ+
Sbjct: 62  KLRMLFKDDYPSSPPKCKFEPPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQE 121

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           LL++PN   PAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 122 LLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 160

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 165

 Score =  221 bits (566), Expect = 1e-75
 Identities = 55/166 (33%), Positives = 86/166 (51%), Gaps = 16/166 (9%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F 
Sbjct: 1   MSK--TAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFN 55

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED-----------NGWRPAIT 109
             L F +DYP  PPK  F     HPN+YP+G VC+SIL+               W P  +
Sbjct: 56  AKLEFPKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQS 115

Query: 110 VKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           V++IL+ +  +L +PN    A  D   L+  +  E++R+V+    +
Sbjct: 116 VEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILK 161

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 Length = 169

 Score =  218 bits (557), Expect = 4e-74
 Identities = 61/156 (39%), Positives = 82/156 (52%), Gaps = 8/156 (5%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F 
Sbjct: 1   MST--PARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFR 54

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L L F E+YP+KPP  KF    FHPNVY +G +CL IL     W P   V  IL  IQ L
Sbjct: 55  LLLEFDEEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR--WTPTYDVASILTSIQSL 112

Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            + PNPA PA  +   LF    ++Y +RV++  ++ 
Sbjct: 113 FNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKS 148

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A Length = 152

 Score =  216 bits (553), Expect = 1e-73
 Identities = 63/156 (40%), Positives = 85/156 (54%), Gaps = 8/156 (5%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS    AR RL  + K  +++ P G    P+      N+M+W  +I G   T W+GG F 
Sbjct: 1   MST--PARKRLMRDFKRLQQDPPAGISGAPQDN----NIMLWNAVIFGPDDTPWDGGTFK 54

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           L+L FSEDYP+KPP  +F    FHPN+Y  G++CL IL     W P   V  IL  IQ L
Sbjct: 55  LSLQFSEDYPNKPPTVRFVSRMFHPNIYADGSICLDILQNQ--WSPIYDVAAILTSIQSL 112

Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           L  PNP  PA ++  +++ +   EY RRVR   +Q 
Sbjct: 113 LCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQS 148

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} PDB: 3fsh_A 2cyx_A 2kly_A Length = 164

 Score =  214 bits (547), Expect = 1e-72
 Identities = 55/163 (33%), Positives = 79/163 (48%), Gaps = 14/163 (8%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  RL  E K    N P G VA P  ++   N   WE +I G   T +E G FP  L 
Sbjct: 2   GTALKRLMAEYKQLTLNPPEGIVAGPMNEE---NFFEWEALIMGPEDTCFEFGVFPAILS 58

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED-----------NGWRPAITVKQI 113
           F  DYP  PPK +F    FHPN+YP G VC+SIL+               W P  +V++I
Sbjct: 59  FPLDYPLSPPKMRFTCEMFHPNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKI 118

Query: 114 LVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           L+ +  +L +PN    A  D  +++  D  ++ +  +Q  ++ 
Sbjct: 119 LLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIVQKS 161

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  214 bits (547), Expect = 1e-72
 Identities = 46/155 (29%), Positives = 75/155 (48%), Gaps = 7/155 (4%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           M G   A   L  +    ++N+  G  AKP     S ++M WE  I G   + W+G  F 
Sbjct: 20  MHG--RAYLLLHRDFCDLKENNYKGITAKPV----SEDMMEWEVEIEGLQNSVWQGLVFQ 73

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           LT++F+ +Y   PP  KF    FHPNV P +G  C+  L+    W    T+  IL+ +Q 
Sbjct: 74  LTIHFTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQV 133

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAK 154
           +L  P   +P   +  ++ ++D + Y+  +R   +
Sbjct: 134 MLSNPVLENPVNLEAARILVKDESLYRTILRLFNR 168

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C Length = 156

 Score =  185 bits (471), Expect = 3e-61
 Identities = 34/136 (25%), Positives = 60/136 (44%), Gaps = 2/136 (1%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL +E +  +K +    V+        + L  W C I G+ GT +E   + LT++  
Sbjct: 22  RSFRLLDELERGQKGNVSEGVSFGLESADDITLSNWSCTIFGQPGTVFENRIYSLTIFCD 81

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPN 125
           ++YP  PP  KF        V   G V  + L+    W    T++ IL+ + Q++L   N
Sbjct: 82  DNYPDSPPTVKFDTKIEMSCVDNCGRVIKNNLHILKNWNRNYTIETILISLRQEMLSSAN 141

Query: 126 PADPAQTDGYQLFIQD 141
              P   +G +++  +
Sbjct: 142 KRLPQPNEG-EVYSNN 156

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A Length = 183

 Score =  169 bits (429), Expect = 2e-54
 Identities = 50/166 (30%), Positives = 73/166 (43%), Gaps = 20/166 (12%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           ++  L  E K  ++    GF      +    +L  WE  I G   T +EGGYF   L F 
Sbjct: 8   SQKALLLELKGLQEEPVEGFRVTLVDEG---DLYNWEVAIFGPPNTYYEGGYFKARLKFP 64

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILV 115
            DYP  PP  +F    +HPN+Y +G VC+SIL+               W P   V+ IL+
Sbjct: 65  IDYPYSPPAFRFLTKMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILL 124

Query: 116 GIQDLLDQPNPADPAQTDGYQLFIQDP------AEYKRRVRQQAKQ 155
            +  LL++PN   PA  D   ++ +         EY   +R+Q   
Sbjct: 125 SVISLLNEPNTFSPANVDASVMYRKWKESKGKDREYTDIIRKQVLG 170

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A Length = 172

 Score =  166 bits (421), Expect = 2e-53
 Identities = 53/157 (33%), Positives = 74/157 (47%), Gaps = 15/157 (9%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
               L  +     KN   GF A         +L  WE +I G   T +EGG F   L F 
Sbjct: 18  GSLLLRRQLAELNKNPVEGFSAGLI---DDNDLYRWEVLIIGPPDTLYEGGVFKAHLTFP 74

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILV 115
           +DYP +PPK KF    +HPNV  +G VC+SIL+E              W P  TV+ I++
Sbjct: 75  KDYPLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMI 134

Query: 116 GIQDLLDQPNPADPAQTDGYQLFIQD-PAEYKRRVRQ 151
            +  +L  PN   PA  D  + + +D   E+KR+V +
Sbjct: 135 SVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR 171

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1 Length = 156

 Score =  154 bits (392), Expect = 3e-49
 Identities = 51/159 (32%), Positives = 74/159 (46%), Gaps = 10/159 (6%)

Query: 1   MSGG---GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+          RL +E +    +   G  A P+      NL  W   + G   T +E  
Sbjct: 1   MTTSKERHSVSKRLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESL 56

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGI 117
            + LTL F  DYP KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +
Sbjct: 57  KYKLTLEFPSDYPYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSL 114

Query: 118 QDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           Q LL +PN A P       ++  +  EYK+ + ++ K  
Sbjct: 115 QSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTA 152

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7} Length = 136

 Score =  151 bits (383), Expect = 4e-48
 Identities = 31/123 (25%), Positives = 56/123 (45%), Gaps = 7/123 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   + KN P              N+ IW     G   T +    + + + 
Sbjct: 19  GNANYRIQKELNNFLKNPPINCTIDVHPS----NIRIWIVQYVGLENTIYANEVYKIKII 74

Query: 65  FSEDYPSKPPKCKF-PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F ++YP KPP   F  +   H +VY +G +CLS+L +D  + P++++  +++ I  +L  
Sbjct: 75  FPDNYPLKPPIVYFLQKPPKHTHVYSNGDICLSVLGDD--YNPSLSISGLILSIISMLSS 132

Query: 124 PNP 126
              
Sbjct: 133 AKE 135

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B Length = 138

 Score =  148 bits (376), Expect = 5e-47
 Identities = 28/130 (21%), Positives = 49/130 (37%), Gaps = 2/130 (1%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +   K       +        + +  W   I G   ++ E   + L++    +Y
Sbjct: 10  RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 69

Query: 70  PSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P  PPK  F      P V P+ G V        + W+ A T++ +L+ ++  +  P    
Sbjct: 70  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRD-WKRAYTMETLLLDLRKEMATPANKK 128

Query: 129 PAQTDGYQLF 138
             Q    + F
Sbjct: 129 LRQPKEGETF 138

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A Length = 155

 Score =  147 bits (373), Expect = 2e-46
 Identities = 39/154 (25%), Positives = 73/154 (47%), Gaps = 5/154 (3%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +  +K  P              N+++W  ++       +    F L 
Sbjct: 1   GSHMASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLR 56

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           + F  +YP KPP  KF    +HPNV  +G +CL I++ +N W+P     Q+L  +  L++
Sbjct: 57  ISFPPEYPFKPPMIKFTTKIYHPNVDENGQICLPIISSEN-WKPCTKTCQVLEALNVLVN 115

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +PN  +P + D   L  Q+P  +++   +   ++
Sbjct: 116 RPNIREPLRMDLADLLTQNPELFRKNAEEFTLRF 149

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ... Length = 150

 Score =  146 bits (372), Expect = 3e-46
 Identities = 50/154 (32%), Positives = 81/154 (52%), Gaps = 6/154 (3%)

Query: 3   GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           G  +A  R+ +E +   ++ P    A P       +L  W+  I G   + ++GG F LT
Sbjct: 1   GSHMALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLT 56

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
           ++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  LL 
Sbjct: 57  IHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKVLLSICSLLC 114

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            PNP DP   +  +++  D   Y +  R+  ++Y
Sbjct: 115 DPNPDDPLVPEIARIYKTDRERYNQLAREWTQKY 148

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1 Length = 158

 Score =  147 bits (372), Expect = 4e-46
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            + +E      + P G    P   +   +L   +  I G  GT + GG F + L   +D+
Sbjct: 17  LVYKEVTTLTADPPDGIKVFP---NEE-DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 72

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P+ PPK  F    FHPNV  +G +C+++L  D  W   + ++ +L+ I+ LL  PNP   
Sbjct: 73  PASPPKGYFLTKIFHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESA 130

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              +  +L +++  EY  R R   + +
Sbjct: 131 LNEEAGRLLLENYEEYAARARLLTEIH 157

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A Length = 165

 Score =  147 bits (372), Expect = 5e-46
 Identities = 50/156 (32%), Positives = 82/156 (52%), Gaps = 6/156 (3%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           +  G +A  R+ +E     ++ P    A P       ++  W+  I G   + ++GG F 
Sbjct: 14  VPRGSMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFF 69

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDL 120
           LT++F  DYP KPPK  F    +HPN+  +G++CL IL     W PA+T+ ++L+ I  L
Sbjct: 70  LTIHFPTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRS--QWSPALTISKVLLSICSL 127

Query: 121 LDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           L  PNP DP   +  +++  D  +Y R  R+  ++Y
Sbjct: 128 LCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKY 163

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C Length = 154

 Score =  145 bits (369), Expect = 8e-46
 Identities = 41/150 (27%), Positives = 73/150 (48%), Gaps = 5/150 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL +E +  RK     F      +    NL+ W+ +I       ++ G F + + F 
Sbjct: 3   ASRRLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFP 58

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            +YP KPPK  F    +HPN+   G VCL +++ +N W+PA    Q++  +  L++ P P
Sbjct: 59  AEYPFKPPKITFKTKIYHPNIDEKGQVCLPVISAEN-WKPATKTDQVIQSLIALVNDPQP 117

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             P + D  + + +D  ++ +   +  K+Y
Sbjct: 118 EHPLRADLAEEYSKDRKKFCKNAEEFTKKY 147

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1 Length = 136

 Score =  145 bits (368), Expect = 9e-46
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
            + RL +E  A + + P G     ++     ++  W   + G  GT +EG  F L   FS
Sbjct: 23  MQKRLQKELLALQNDPPPGMTLNEKSVQN--SITQWIVDMEGAPGTLYEGEKFQLLFKFS 80

Query: 67  EDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
             YP   P+  F       HP+VY +G +CLSIL ED  W PA++V+ + + I  +L
Sbjct: 81  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISML 135

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 166

 Score =  145 bits (369), Expect = 2e-45
 Identities = 49/150 (32%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E     K+ P    A P       ++  W+  I G   + + GG F L ++F 
Sbjct: 22  ALKRINKELNDLSKDPPTNCSAGPVGD----DMFHWQATIMGPEDSPYSGGVFFLNIHFP 77

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +HPN+   G +CL IL +   W PA+T+ ++L+ I  LL  PNP
Sbjct: 78  SDYPFKPPKVNFTTKIYHPNINSQGAICLDILKD--QWSPALTISKVLLSISSLLTDPNP 135

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   +   L+  D   Y +  R+ +++Y
Sbjct: 136 DDPLVPEIAHLYKSDRMRYDQTAREWSQKY 165

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1 Length = 154

 Score =  143 bits (364), Expect = 5e-45
 Identities = 47/155 (30%), Positives = 73/155 (47%), Gaps = 6/155 (3%)

Query: 2   SGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL 61
           +G      R+ +E +        G  A+P+      N   +  +I G   + +EGG F L
Sbjct: 1   AGSAGLPRRIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKL 56

Query: 62  TLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
            L+  E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL
Sbjct: 57  ELFLPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALL 114

Query: 122 DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             PNP DP   D  + +  + A+     R   + Y
Sbjct: 115 SAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLY 149

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1 Length = 125

 Score =  142 bits (360), Expect = 9e-45
 Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 7/125 (5%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A  R+ +E   +  N P              N+ IW     G   T +    + L + 
Sbjct: 5   GNANYRIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKII 60

Query: 65  FSEDYPSKPPKCKF-PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F +DYP KPP   F  +   H +VY +G +CLS+L +D  + P++++  +++ I  +L  
Sbjct: 61  FPDDYPLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPSLSISGLVLSIISMLSS 118

Query: 124 PNPAD 128
                
Sbjct: 119 AKEKK 123

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 169

 Score =  143 bits (362), Expect = 2e-44
 Identities = 42/152 (27%), Positives = 65/152 (42%), Gaps = 6/152 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL  E        P G        D    +      I G   T +E G F L +   
Sbjct: 5   RASRLKRELHMLATEPPPGITCWQ---DKD-QMDDLRAQILGGANTPYEKGVFKLEVIIP 60

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLDQP 124
           E YP +PP+ +F    +HPN+  +G +CL +L       WRP++ +  +L  IQ L+ +P
Sbjct: 61  ERYPFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEP 120

Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           NP DP   D    F  +   + +  RQ  +++
Sbjct: 121 NPDDPLMADISSEFKYNKPAFLKNARQWTEKH 152

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A Length = 194

 Score =  144 bits (364), Expect = 2e-44
 Identities = 51/150 (34%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E      + P    A P    G  N+  W   I G  G+ +EGG F L + F+
Sbjct: 49  SAKRIQKELADITLDPPPNCSAGP---KGD-NIYEWRSTILGPPGSVYEGGVFFLDITFT 104

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            +YP KPPK  F    +H N+   G +CL IL +   W PA+T+ ++L+ I  LL   NP
Sbjct: 105 PEYPFKPPKVTFRTRIYHCNINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNP 162

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           ADP        ++ + AE+ R  RQ  K+Y
Sbjct: 163 ADPLVGSIATQYMTNRAEHDRMARQWTKRY 192

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A Length = 160

 Score =  142 bits (360), Expect = 2e-44
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +   
Sbjct: 26  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 85

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLLD 122
             YP  PP  +F        V  S  V     +S+L +   W+ + ++K +L  ++ L+ 
Sbjct: 86  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLMM 142

Query: 123 QPNPADPAQTDGYQLF 138
                   Q    Q +
Sbjct: 143 SKENMKLPQPPEGQCY 158

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A Length = 149

 Score =  141 bits (359), Expect = 2e-44
 Identities = 54/152 (35%), Positives = 79/152 (51%), Gaps = 7/152 (4%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           GI R R+T+E +      P G +A P  +    N   +  +I G  GT +EGG + L L+
Sbjct: 1   GIPR-RITKETQNLANEPPPGIMAVPVPE----NYRHFNILINGPDGTPYEGGTYKLELF 55

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E YP +PPK +F    +HPN+   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 56  LPEQYPMEPPKVRFLTKIYHPNIDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSSP 113

Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            P DP  +   + F QD  + +   RQ  K Y
Sbjct: 114 EPDDPLDSKVAEHFKQDKNDAEHVARQWNKIY 145

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F Length = 155

 Score =  142 bits (360), Expect = 3e-44
 Identities = 47/150 (31%), Positives = 75/150 (50%), Gaps = 6/150 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  
Sbjct: 6   LPKRIIKETEKLVSDPVPGITAEP---HDD-NLRYFQVTIEGPEQSPYEDGIFELELYLP 61

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           +DYP + PK +F    +HPN+   G +CL +L  +  W PA+ ++ +L+ IQ LL  PNP
Sbjct: 62  DDYPMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN--WSPALQIRTVLLSIQALLASPNP 119

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   D  + +I++    K + R+  K Y
Sbjct: 120 NDPLANDVAEDWIKNEQGAKAKAREWTKLY 149

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1 Length = 180

 Score =  142 bits (361), Expect = 3e-44
 Identities = 35/151 (23%), Positives = 67/151 (44%), Gaps = 8/151 (5%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
            A+ R+ ++                       +L+ ++ +I       ++ G F  +   
Sbjct: 26  AAQLRIQKDINELNLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKV 79

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
            + YP  PPK K     +HPN+   G V L+IL ED  W+P +T+  I+ G+Q L  +PN
Sbjct: 80  GQGYPHDPPKVKCETMVYHPNIDLEGNVALNILRED--WKPVLTINSIIYGLQYLFLEPN 137

Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  ++   +   +++ V++  +  
Sbjct: 138 PEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 168

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1 Length = 179

 Score =  142 bits (361), Expect = 3e-44
 Identities = 49/152 (32%), Positives = 69/152 (45%), Gaps = 7/152 (4%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G    RL +E      +   G  A PE    S NL  W   I G  GT +E   + L+L 
Sbjct: 29  GPVGKRLQQELMTLMMSGDKGISAFPE----SDNLFKWVGTIHGAAGTVYEDLRYKLSLE 84

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
           F   YP   P  KF    +HPNV   G + L IL E   W     V+ IL+ IQ LL +P
Sbjct: 85  FPSGYPYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQSLLGEP 142

Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           N   P  T   +L+ ++P  +K+ +++   + 
Sbjct: 143 NIDSPLNTHAAELW-KNPTAFKKYLQETYSKQ 173

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A Length = 167

 Score =  141 bits (357), Expect = 1e-43
 Identities = 37/156 (23%), Positives = 62/156 (39%), Gaps = 9/156 (5%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +    L +E      N P              N +    +        ++GG F      
Sbjct: 14  VRDKLLVKEVAELEANLPCTCKVHFPDP----NKLHCFQLTVTPDEGYYQGGKFQFETEV 69

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNED----NGWRPAITVKQILVGIQDLL 121
            + Y   PPK K     +HPN+  +G +CLS+L E      GW P  T+K ++ G+  L 
Sbjct: 70  PDAYNMVPPKVKCLTKIWHPNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLF 129

Query: 122 -DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            D  N  DP   +  +  ++D  +++ +V    K+Y
Sbjct: 130 TDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRY 165

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C Length = 190

 Score =  141 bits (357), Expect = 2e-43
 Identities = 42/150 (28%), Positives = 61/150 (40%), Gaps = 2/150 (1%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  +  +                    +      +I       +  G     L F+
Sbjct: 30  ARIRLKRDLDSLDLPPTVTLNVITSPDSADRSQSPKLEVIVRPDEGYYNYGSINFNLDFN 89

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E YP +PPK    +  FHPN+   G VCL+IL ED  W PA+ ++ I+ G+  L  +PNP
Sbjct: 90  EVYPIEPPKVVCLKKIFHPNIDLKGNVCLNILRED--WSPALDLQSIITGLLFLFLEPNP 147

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   D  +L  +   E+   VR      
Sbjct: 148 NDPLNKDAAKLLCEGEKEFAEAVRLTMSGG 177

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A Length = 172

 Score =  140 bits (355), Expect = 2e-43
 Identities = 42/168 (25%), Positives = 65/168 (38%), Gaps = 16/168 (9%)

Query: 1   MSGGGIARGRLTEERKAWRK---------NHPHGFVAKPETKDGSVNLMIWECIIPGKTG 51
           M+       R+ +E K   K         N   G +      D + +L  WE II G + 
Sbjct: 3   MAD--TCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDET-DLSKWEAIISGPSD 59

Query: 52  TDWEGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNV-YPSGTVCLSILNEDNGWRPAIT 109
           T +E   F + +     YP  PPK  F Q    H NV   +G +CL+IL  +  W P   
Sbjct: 60  TPYENHQFRILIEVPSSYPMNPPKISFMQNNILHCNVKSATGEICLNILKPEE-WTPVWD 118

Query: 110 VKQILVGIQDLLDQPNPADPAQTDGYQLF-IQDPAEYKRRVRQQAKQY 156
           +   +  +  LL +P    P   D   +    D + Y+  V+    + 
Sbjct: 119 LLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSAYQGIVKYFLAER 166

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A Length = 149

 Score =  139 bits (353), Expect = 2e-43
 Identities = 41/148 (27%), Positives = 71/148 (47%), Gaps = 6/148 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +    +Y
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P KPPK +F    +HPN+   +G +CL IL     W P IT+K  L+ +Q LL  P P D
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNA--WSPVITLKSALISLQALLQSPEPND 119

Query: 129 PAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P   +  Q +++D   + +      + Y
Sbjct: 120 PQDAEVAQHYLRDRESFNKTAALWTRLY 147

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1 Length = 215

 Score =  140 bits (355), Expect = 6e-43
 Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 6/151 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +   
Sbjct: 3   RAKRIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVP 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
            +YP KPPK +F    +HPN+   +G +CL IL     W P IT+K  L+ +Q LL  P 
Sbjct: 60  MEYPFKPPKMQFDTKVYHPNISSVTGAICLDILRNA--WSPVITLKSALISLQALLQSPE 117

Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  Q +++D   + +      + Y
Sbjct: 118 PNDPQDAEVAQHYLRDRESFNKTAALWTRLY 148

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A Length = 399

 Score =  143 bits (363), Expect = 3e-42
 Identities = 49/155 (31%), Positives = 80/155 (51%), Gaps = 6/155 (3%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G +A  R+ +E     ++ P    A P       ++  W+  I G   + ++GG F LT+
Sbjct: 1   GAMALKRIHKELNDLARDPPAQCSAGPVGD----DMFHWQATIMGPNDSPYQGGVFFLTI 56

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           +F  DYP KPPK  F    +HPN+  +G++ L IL     W PA+T+ ++L+ I  LL  
Sbjct: 57  HFPTDYPFKPPKVAFTTRIYHPNINSNGSISLDILRS--QWSPALTISKVLLSICSLLCD 114

Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           PNP DP   +  +++  D  +Y R  R+  ++Y  
Sbjct: 115 PNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM 149

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1 Length = 160

 Score =  137 bits (346), Expect = 3e-42
 Identities = 34/119 (28%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
           +L+ ++ +I       ++ G F  +    + YP  PPK K     +HPN+   G VCL+I
Sbjct: 33  DLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNI 91

Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           L ED  W+P +T+  I+ G+Q L  +PNP DP   +  ++   +   +++ V++  +  
Sbjct: 92  LRED--WKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 148

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii} Length = 216

 Score =  137 bits (348), Expect = 7e-42
 Identities = 48/154 (31%), Positives = 72/154 (46%), Gaps = 7/154 (4%)

Query: 4   GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           G     RL +E K     +     A       S N   W   I G  GT +EGG+F L +
Sbjct: 21  GSKELLRLQKELKDIENENVQEIDAHI---KDS-NFFEWVGFIKGPEGTPYEGGHFTLAI 76

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLD 122
               DYP  PPK KF    +HPN+   +G +CL +L  +  W PA+T++  L+ IQ LL 
Sbjct: 77  TIPNDYPYNPPKIKFVTKIWHPNISSQTGAICLDVLKNE--WSPALTIRTALLSIQALLS 134

Query: 123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            P P DP   +  +++ ++ A + +      K +
Sbjct: 135 DPQPDDPQDAEVAKMYKENHALFVKTASVWTKTF 168

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A Length = 159

 Score =  135 bits (343), Expect = 9e-42
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 10/160 (6%)

Query: 1   MSGGGIARGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+   IA  R+  E K   K+     +        +    N       I G   T +EGG
Sbjct: 3   MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGG 58

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG 116
            + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ 
Sbjct: 59  RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLS 116

Query: 117 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 117 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 156

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi} Length = 167

 Score =  136 bits (343), Expect = 1e-41
 Identities = 27/134 (20%), Positives = 52/134 (38%), Gaps = 10/134 (7%)

Query: 23  PHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ 80
           PH         D    +  W   +     + +   G  + L++ FS+DYP +PP  +F  
Sbjct: 36  PHSTAIFSVDTD---TIYNWILKVKAPADSVYGGAGNTYQLSVLFSDDYPHEPPTVRFVT 92

Query: 81  GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL---DQPNPADPAQTDGYQL 137
             + P V   G +C  ++N+   W P      ++  + D +    +    D    +    
Sbjct: 93  PVYSPLVTGEGGICDRMVNDF--WTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHY 150

Query: 138 FIQDPAEYKRRVRQ 151
             + P ++  RVR+
Sbjct: 151 LEKFPQDFAARVRR 164

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens} Length = 170

 Score =  135 bits (341), Expect = 2e-41
 Identities = 31/136 (22%), Positives = 52/136 (38%), Gaps = 7/136 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
              RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +   
Sbjct: 36  RNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECG 95

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTV----CLSILNEDNGWRPAITVKQILVGIQDLLD 122
             YP  PP  +F        V  S  V     +S+L +   W+ + ++K +L  ++ L+ 
Sbjct: 96  PKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAK---WQNSYSIKVVLQELRRLMM 152

Query: 123 QPNPADPAQTDGYQLF 138
                   Q    Q +
Sbjct: 153 SKENMKLPQPPEGQCY 168

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A Length = 201

 Score =  132 bits (335), Expect = 4e-40
 Identities = 46/160 (28%), Positives = 70/160 (43%), Gaps = 12/160 (7%)

Query: 1   MSGGGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG 57
           M+   IA  R+  E K   K+     +        +    N       I G   T +EGG
Sbjct: 2   MAN--IAVQRIKREFKEVLKSEETSKNQIKVDLVDE----NFTELRGEIAGPPDTPYEGG 55

Query: 58  YFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG 116
            + L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ 
Sbjct: 56  RYQLEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLS 113

Query: 117 IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +Q LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 114 LQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 153

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens} Length = 179

 Score =  132 bits (333), Expect = 5e-40
 Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 12/158 (7%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           MS     + R+  +     ++     +           L  +     G  GT +EGG + 
Sbjct: 20  MSSPSPGKRRMDTDVIKLIESKHEVTILG--------GLNEFVVKFYGPQGTPYEGGVWK 71

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQIL-VGIQ 118
           + +   + YP K P   F    FHPN+   SGTVCL ++N+   W     +  I    + 
Sbjct: 72  VRVDLPDKYPFKSPSIGFMNKIFHPNIDEASGTVCLDVINQT--WTALYDLTNIFESFLP 129

Query: 119 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            LL  PNP DP   D   +++  P EYK+++++  ++Y
Sbjct: 130 QLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKY 167

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1 Length = 193

 Score =  131 bits (330), Expect = 2e-39
 Identities = 44/148 (29%), Positives = 72/148 (48%), Gaps = 7/148 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R  +   A   +  HG  A+        ++  W   I G  GT +EGG+F L +    DY
Sbjct: 49  RAHDSEPAATHSTSHGVSAQIVGG----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 104

Query: 70  PSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P  PPK KF    +HPN+   +G +CL IL  +  W PA+T++  L+ IQ +L  P P D
Sbjct: 105 PYNPPKMKFVTKIWHPNISSQTGAICLDILKHE--WSPALTIRTALLSIQAMLADPVPTD 162

Query: 129 PAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P   +  ++ I++   + +  +   + +
Sbjct: 163 PQDAEVAKMMIENHPLFVQTAKLWTETF 190

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum} Length = 152

 Score =  129 bits (327), Expect = 2e-39
 Identities = 42/149 (28%), Positives = 73/149 (48%), Gaps = 8/149 (5%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            LT ++  + K    G+  +    +   +   ++ +  G  GT +EGG + + +   +DY
Sbjct: 3   SLTRKQCDFTKLIMAGYDLEL---NNG-STQDFDVMFHGPNGTAYEGGIWKVHVTLPDDY 58

Query: 70  PSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQIL-VGIQDLLDQPNPA 127
           P   P   F     HPNV   SG+VCL ++N+   W P  ++  +  V +  LL  PNP+
Sbjct: 59  PFASPSIGFMNKLLHPNVDEASGSVCLDVINQT--WTPLYSLVNVFEVFLPQLLTYPNPS 116

Query: 128 DPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           DP  +D   L ++D   Y+ +V++  K Y
Sbjct: 117 DPLNSDAASLLMKDKNIYEEKVKEYVKLY 145

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A* Length = 253

 Score =  130 bits (328), Expect = 2e-38
 Identities = 45/155 (29%), Positives = 67/155 (43%), Gaps = 10/155 (6%)

Query: 6   IARGRLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLT 62
           IA  R+  E K   K+     +             N       I G   T +EGG + L 
Sbjct: 57  IAVQRIKREFKEVLKSEETSKNQIKVDLV----DENFTELRGEIAGPPDTPYEGGRYQLE 112

Query: 63  LYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
           +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q LL
Sbjct: 113 IKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQALL 170

Query: 122 DQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
               P DP        + Q+P  +K+  R  A  Y
Sbjct: 171 AAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 205

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens} Length = 323

 Score =  128 bits (322), Expect = 6e-37
 Identities = 47/162 (29%), Positives = 70/162 (43%), Gaps = 15/162 (9%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E      + P    +    +     L I + +I G   T +  G F   +YF +DY
Sbjct: 80  RLAQEAVTLSTSLPLSSSSSVFVRCDEERLDIMKVLITGPADTPYANGCFEFDVYFPQDY 139

Query: 70  PSKPPKCKF-----PQGFFHPNVYPSGTVCLSILNEDNG-----WRPAI-TVKQILVGIQ 118
           PS PP             F+PN+Y  G VCLSILN  +G     W P   +  Q+LV +Q
Sbjct: 140 PSSPPLVNLETTGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQ 199

Query: 119 DLL--DQPNPADPA--QTDGYQLFIQDPAEYKRRVRQQAKQY 156
            L+   +P   +P   ++ G     Q   EY   +RQ   ++
Sbjct: 200 SLILVAEPYFNEPGYERSRGTPSGTQSSREYDGNIRQATVKW 241

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1 Length = 171

 Score =  122 bits (309), Expect = 2e-36
 Identities = 36/121 (29%), Positives = 53/121 (43%), Gaps = 4/121 (3%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV-YPSGTVCLS 96
            +  +     G  GT +E G + L +    DYP K P   F     HPNV   SG+VCL 
Sbjct: 36  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 95

Query: 97  ILNEDNGWRPAITVKQIL-VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
           ++N+   W P   ++ I  V +  LL  PNP+DP       L   D   +   +R+    
Sbjct: 96  VINQT--WTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVST 153

Query: 156 Y 156
           +
Sbjct: 154 H 154

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1 Length = 187

 Score =  116 bits (292), Expect = 8e-34
 Identities = 34/158 (21%), Positives = 64/158 (40%), Gaps = 10/158 (6%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL ++    +K+      A+P       N++ W  ++ G   T +EGGY+   L F 
Sbjct: 15  ATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFP 70

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPN 125
            ++P KPP         +     +  +CLSI +   + W PA +V  IL G+   + +  
Sbjct: 71  REFPFKPPSIYMIT--PNGRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG 128

Query: 126 PADPA---QTDGYQLFIQDPAEYKRRVRQQAKQYPPVI 160
           P   +        +        +  + +   + +P V+
Sbjct: 129 PTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV 166

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A Length = 186

 Score =  109 bits (274), Expect = 4e-31
 Identities = 26/164 (15%), Positives = 52/164 (31%), Gaps = 16/164 (9%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG------------ 48
           +SG   A  RL +E +   ++  +             +L  W   +              
Sbjct: 22  VSGSVQASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQ 80

Query: 49  KTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNGWRPA 107
                    Y  L   F +++P  PP  +          V   G +C+ +L +  GW  A
Sbjct: 81  ILKEKEGIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSA 139

Query: 108 ITVKQILVGIQDLLDQPNPADPAQTDGYQ-LFIQDPAEYKRRVR 150
            +++ +++ I   L +         +  Q    +    Y   V+
Sbjct: 140 YSIESVIMQINATLVKGKARVQFGANKNQYNLARAQQSYNSIVQ 183

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A Length = 146

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 20/100 (20%), Positives = 32/100 (32%), Gaps = 13/100 (13%)

Query: 34  DGSVNLMIWECIIPGKTGTDWEGG--YFPLTLYFSEDYPSKPPKCKFP-----QGFFHPN 86
            GS  LM     IP      + G     P+ L+  + YP  PP C              +
Sbjct: 48  TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKH 103

Query: 87  VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           V  +G + L  L       P   +  ++  +  +     P
Sbjct: 104 VDANGKIYLPYL--HEWKHPQSDLLGLIQVMIVVFGDEPP 141

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
4gpr_A	151	Ubiquitin-conjugating enzyme family protein; ubiqu	100.0
3rcz_B	163	SUMO-conjugating enzyme UBC9; SUMO-like domain, pr	100.0
2gjd_A	157	Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT	100.0
1ayz_A	169	UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin	100.0
2aak_A	152	UBC1, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1z2u_A	150	Ubiquitin-conjugating enzyme E2 2; PSI, secsg, pro	100.0
2grr_A	161	Ubiquitin-conjugating enzyme E2 I; ubiquitin, conj	100.0
2c2v_B	154	Ubiquitin-conjugating enzyme E2 N; chaperone, heat	100.0
1zdn_A	158	Ubiquitin-conjugating enzyme E2S; structural genom	100.0
2ucz_A	165	UBC7, ubiquitin conjugating enzyme; ubiquitin conj	100.0
1yh2_A	169	HSPC150 protein similar to ubiquitin-conjugating e	100.0
2ayv_A	166	Ubiquitin-conjugating enzyme E2; structural genomi	100.0
2c4o_A	165	Ubiquitin-conjugating enzyme E2 D2; thioesterifica	100.0
2bep_A	159	Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2	100.0
3h8k_A	164	Ubiquitin-conjugating enzyme E2 G2; alpha beta, al	100.0
2r0j_A	149	Ubiquitin carrier protein; ubiquitin conjugating,	100.0
2e2c_A	156	Ubiquitin conjugating enzyme; ubiquitin conjugatio	100.0
1fxt_A	149	Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NM	100.0
1jat_A	155	Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, lig	100.0
3k9o_A	201	Ubiquitin-conjugating enzyme E2 K; E2-25K, complex	100.0
2f4z_A	193	Tgtwinscan_2721 - E2 domain; ubiquitin conjugating	100.0
3bzh_A	194	Ubiquitin-conjugating enzyme E2 E1; structural gen	100.0
1i7k_A	179	Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A	100.0
2pwq_A	216	Ubiquitin conjugating enzyme; structural genomics	100.0
1wzv_A	155	Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A	100.0
3fn1_B	167	NEDD8-conjugating enzyme UBE2F; ligase, ATP-bindin	100.0
1yrv_A	169	Ubiquitin-conjugating ligase MGC351130; structural	100.0
3rz3_A	183	Ubiquitin-conjugating enzyme E2 R1; ubiquitin conj	100.0
3e46_A	253	Ubiquitin-conjugating enzyme E2-25 kDa; huntington	100.0
1tte_A	215	Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiq	100.0
2y9m_A	172	Ubiquitin-conjugating enzyme E2-21 kDa; ligase-tra	100.0
2awf_A	172	Ubiquitin-conjugating enzyme E2 G1; ligase, UBL co	100.0
1c4z_D	154	UBCH7, ubiquitin conjugating enzyme E2; bilobal st	100.0
2z5d_A	179	Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, lig	100.0
2onu_A	152	Ubiquitin-conjugating enzyme, putative; UBC, plasm	100.0
1y8x_A	160	Ubiquitin-conjugating enzyme E2 M; ubiquitin-conju	100.0
2nvu_C	180	NEDD8-conjugating enzyme UBC12; multifunction macr	100.0
1yf9_A	171	Ubiquitin carrier protein 4; SGPP, structural geno	100.0
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	100.0
3o2u_A	190	NEDD8-conjugating enzyme UBC12; E2 conjugase, liga	100.0
4ds2_A	167	Ubiquitin-conjugating enzyme E2, putative; structu	100.0
3ceg_A	323	Baculoviral IAP repeat-containing protein 6; apopt	100.0
2q0v_A	156	Ubiquitin-conjugating enzyme E2, putative; malaria	100.0
2fo3_A	125	Ubiquitin-conjugating enzyme; SGC, UBC, structural	100.0
1jat_B	138	Ubiquitin-conjugating enzyme variant MMS2; UEV, li	100.0
2a4d_A	160	Ubiquitin-conjugating enzyme E2 variant 1; alterna	100.0
2h2y_A	136	Ubiquitin-conjugating enzyme; structural genomics,	100.0
2hlw_A	170	Ubiquitin-conjugating enzyme E2 variant 1; ubiquit	100.0
2a7l_A	136	Hypothetical ubiquitin-conjugating enzyme LOC55284	100.0
2f4w_A	187	Ubiquitin-conjugating enzyme E2, J2; endoplasmic r	100.0
1zuo_A	186	Hypothetical protein LOC92912; ligase, ubiquitin-c	100.0
2z6o_A	172	UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, p	99.95
3r3q_A	162	Suppressor protein STP22 of temperature-sensitive	99.82
3kpa_A	168	Probable ubiquitin fold modifier conjugating ENZY;	99.72
3obq_A	146	Tumor susceptibility gene 101 protein; protein tra	99.6
2ebm_A	128	RWD domain-containing protein 1; alpha+beta sandwi	97.35
2day_A	128	Ring finger protein 25; ligase, metal-binding, UB1	96.2
3zqs_A	186	E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A	95.95
2yz0_A	138	Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-	95.68
2ebk_A	128	RWD domain-containing protein 3; alpha+beta sandwi	95.18
2daw_A	154	RWD domain containing protein 2; alpha+beta sandwi	94.71
1ukx_A	137	GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple	93.93
2dax_A	152	Protein C21ORF6; RWD domain, alpha+beta sandwich f	91.64
3u3c_B	26	Paxillin LD2 peptide; 4-helix bundle, focal adhesi	82.77
2cwb_A	108	Chimera of immunoglobulin G binding protein G and	82.28

>4gpr_A Ubiquitin-conjugating enzyme family protein; ubiquitin conjugation, EHU ehring1, thiol esterification, ligase; 1.60A {Entamoeba histolytica}

Probab=100.00  E-value=3.4e-53  Score=304.26  Aligned_cols=150  Identities=29%  Similarity=0.644  Sum_probs=145.8

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      +..|.+||++|+++++++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|
T Consensus         2 a~~a~~RL~kEl~~l~~~~~~~i~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~   77 (151)
T 4gpr_A            2 AAMAMRRIQKELREIQQDPPCNCSAGPVG----DDIFHWTATITGPDDSPYQGGLFFLDVHFPVDYPFKAPRVTFMTKVY   77 (151)
T ss_dssp             CHHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCSSSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             chHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCceEEEEEEeCCCCCCcCCCEEEEEEECCCCCCCCcceeEEecCcc
Confidence            36799999999999999999999999876    79999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      ||||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.|
T Consensus        78 HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~ya~p  151 (151)
T 4gpr_A           78 HPNINKNGVICLDILKD--QWSPALTLSRVLLSISSLLTDPNPSDPLDPEVANVLRANKKQFEDTAREWTRMYARP  151 (151)
T ss_dssp             BTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHCCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCCC
T ss_pred             cceECCCCEEEcccccC--CCCCCCcHHHHHHHHHHHhcCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            99999999999999987  899999999999999999999999999999999999999999999999999999976

>3rcz_B SUMO-conjugating enzyme UBC9; SUMO-like domain, protein:protein interaction, protein ligase complex; HET: DNA; 1.90A {Schizosaccharomyces pombe} SCOP: d.20.1.1

Probab=100.00  E-value=2.6e-53  Score=307.90  Aligned_cols=157  Identities=59%  Similarity=1.144  Sum_probs=147.4

Q ss_pred             CCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            2 SGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         2 s~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      +||..|.+||++|+++|+++++.|+++.+..+ |++.|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus         6 ~~~~~~~~RL~kEl~~l~~~~p~gi~~~p~~~~d~~~nl~~W~~~I~Gp~~Tpyegg~f~l~i~fp~~YP~~pP~v~F~t   85 (163)
T 3rcz_B            6 HHSSLCKTRLQEERKQWRRDHPFGFYAKPCKSSDGGLDLMNWKVGIPGKPKTSWEGGLYKLTMAFPEEYPTRPPKCRFTP   85 (163)
T ss_dssp             ---CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSSEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCcHHHHHHHHHHHHHHHhCCCCCEEEEEccCcCCCCCccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCEEEEeC
Confidence            46789999999999999999999999998764 33349999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ++|||||+.+|+||+++|..+++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||+
T Consensus        86 ~i~HPnV~~~G~iCl~iL~~~~~W~p~~ti~~vL~~i~~ll~~P~~~~p~n~~aa~~~~~d~~~y~~~~r~~~~~ya~  163 (163)
T 3rcz_B           86 PLFHPNVYPSGTVCLSILNEEEGWKPAITIKQILLGIQDLLDDPNIASPAQTEAYTMFKKDKVEYEKRVRAQARENAP  163 (163)
T ss_dssp             CCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             CCccCCCCCCCcEeccccCCCCCcCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhCc
Confidence            999999999999999999885579999999999999999999999999999999999999999999999999999985

>2gjd_A Ubiquitin-conjugating enzyme E2-18 kDa; UBC9P, SMT3, crystallography, ligase; 1.75A {Saccharomyces cerevisiae} PDB: 2eke_A 3ong_B

Probab=100.00  E-value=5e-53  Score=305.11  Aligned_cols=156  Identities=62%  Similarity=1.151  Sum_probs=146.7

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      ||  +.+.+||++|+++|+++++.|+++.|..+ ++++|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.
T Consensus         1 Ms--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   78 (157)
T 2gjd_A            1 MS--SLCLQRLQEERKKWRKDHPFGFYAKPVKKADGSMDLQKWEAGIPGKEGTNWAGGVYPITVEYPNEYPSKPPKVKFP   78 (157)
T ss_dssp             ----CHHHHHHHHHHHHHHHCCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTBEEEEEEECCTTTTTSCCEEECC
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCcccEEEEEEECCCCCCcCCeEEEEEEEcCCCCCCCCCeeecc
Confidence            77  78999999999999999999999998753 3446999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        80 t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |++|||||+.+|+||+++|..+++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        79 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  157 (157)
T 2gjd_A           79 AGFYHPNVYPSGTICLSILNEDQDWRPAITLKQIVLGVQDLLDSPNPNSPAQEPAWRSFSRNKAEYDKKVLLQAKQYSK  157 (157)
T ss_dssp             TTCCCTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHTSCCTTCCCCHHHHHHHHHCHHHHHHHHHHHHHHTBC
T ss_pred             CCCccCCCCCCCcEeeecccCCCCCCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999885579999999999999999999999999999999999999999999999999999984

>1ayz_A UBC2, ubiquitin-conjugating enzyme RAD6; ubiquitin conjugation; 2.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=1e-52  Score=306.49  Aligned_cols=150  Identities=41%  Similarity=0.767  Sum_probs=145.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||  +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus         1 Ms--~~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~v~F~t   74 (169)
T 1ayz_A            1 MS--TPARRRLMRDFKRMKEDAPPGVSASPLP----DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLS   74 (169)
T ss_dssp             -C--CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEecC----CccccceEEEECCCCCCcCCCEEEEEEECcccCCCCCCcccccc
Confidence            77  7899999999999999999999999876    89999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ++|||||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        75 ~i~HPNI~~~G~ICl~iL~~--~WsP~~~i~~vL~si~~ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~~r~~~~~~a~  150 (169)
T 1ayz_A           75 EMFHPNVYANGEICLDILQN--RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSWE  150 (169)
T ss_dssp             CCCCTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHHH
T ss_pred             CCccCCCCCCCeEeehhhcc--CCCCcCcHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence            99999999999999999987  89999999999999999999999999999999999999999999999999999974

>2aak_A UBC1, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase; 2.40A {Arabidopsis thaliana} SCOP: d.20.1.1 PDB: 1jas_A 2y4w_A 2yb6_A 2ybf_A 1q34_A 1z3d_A

Probab=100.00  E-value=1.9e-52  Score=300.69  Aligned_cols=150  Identities=42%  Similarity=0.823  Sum_probs=145.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||  +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus         1 Ms--~~a~~RL~~E~~~l~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   74 (152)
T 2aak_A            1 MS--TPARKRLMRDFKRLQQDPPAGISGAPQD----NNIMLWNAVIFGPDDTPWDGGTFKLSLQFSEDYPNKPPTVRFVS   74 (152)
T ss_dssp             CC--CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEeCC----CCccEEEEEEeCCCCCCccCCEEEEEEECCCCCCCCCCEEEEec
Confidence            77  7899999999999999999999998876    79999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           81 GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ++|||||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        75 ~i~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  150 (152)
T 2aak_A           75 RMFHPNIYADGSICLDILQN--QWSPIYDVAAILTSIQSLLCDPNPNSPANSEAARMYSESKREYNRRVRDVVEQSWT  150 (152)
T ss_dssp             CCCCTTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHTSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CcccCCCCCCCEEechhhcC--CCCCCCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence            99999999999999999987  89999999999999999999999999999999999999999999999999999985

>1z2u_A Ubiquitin-conjugating enzyme E2 2; PSI, secsg, proteosome pathway, structural genomics, protein structure initiative; 1.10A {Caenorhabditis elegans} SCOP: d.20.1.1 PDB: 3tgd_A 2esk_A 1ur6_A 1w4u_A 4a49_B* 4a4b_C* 4a4c_C* 3eb6_B 3l1y_A 2esp_A 2eso_A 2esq_A 3l1z_A 2oxq_A 3a33_A 4ddg_D 4ddi_D 1x23_A 3rpg_A 2fuh_A ...

Probab=100.00  E-value=1.8e-52  Score=300.24  Aligned_cols=150  Identities=33%  Similarity=0.680  Sum_probs=145.5

Q ss_pred             CchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031408            3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (160)
Q Consensus         3 ~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (160)
                      ||..+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus         1 ~s~~~~~RL~kEl~~l~~~~~~~~~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (150)
T 1z2u_A            1 GSHMALKRIQKELQDLGRDPPAQCSAGPVG----DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRI   76 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCEEEEECC----CcceEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCcEEEEecCc
Confidence            568899999999999999999999999876    7999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        77 ~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~  150 (150)
T 1z2u_A           77 YHPNINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYAM  150 (150)
T ss_dssp             CBTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCcCCCCCeEeeccccC--CCCCCCCHHHHHHHHHHHhhCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999997  89999999999999999999999999999999999999999999999999999984

>2grr_A Ubiquitin-conjugating enzyme E2 I; ubiquitin, conjugation, small ubiquitin like modifer, SMT3, ligase; 1.30A {Homo sapiens} PDB: 2grq_A 2grn_A 2pe6_A 2gro_A 2grp_A 1u9a_A 1u9b_A 2vrr_A 2px9_B 1z5s_A 2xwu_A 3uin_A 3uio_A 3uip_A* 1kps_A 2o25_C 1a3s_A 3a4s_A 2uyz_A

Probab=100.00  E-value=2.3e-52  Score=302.80  Aligned_cols=156  Identities=65%  Similarity=1.228  Sum_probs=147.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      ||  +.+.+||++|+++|+++++.|+++.+..+ ++++|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus         4 M~--~~a~~RL~kE~~~l~~~~~~g~~~~p~~~~~~~~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   81 (161)
T 2grr_A            4 MS--GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFE   81 (161)
T ss_dssp             CC--HHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEES
T ss_pred             cc--HHHHHHHHHHHHHHHhCCCCCEEEEeccccCCCCCccEEEEEEECCCCCCccCCEEEEEEEcCcccCCCCCEEEEe
Confidence            56  78999999999999999999999988643 3457999999999999999999999999999999999999999999


Q ss_pred             cCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           80 QGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        80 t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |++|||||+.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        82 t~i~HPnv~~~G~iCl~iL~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~~~~~~~~a~  160 (161)
T 2grr_A           82 PPLFHPNVYPSGTVCLSILEEDKDWRPAITIKQILLGIQELLNEPNIQSPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  160 (161)
T ss_dssp             SCCCSTTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             cCcccCCCCCCCeEeehhcCCCCCcCCCCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            9999999999999999999875589999999999999999999999999999999999999999999999999999985

>2c2v_B Ubiquitin-conjugating enzyme E2 N; chaperone, heat-shock protein complex, E3 ligase, ubiquitiny TPR, heat-shock protein; 2.9A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.2e-53  Score=304.59  Aligned_cols=151  Identities=31%  Similarity=0.606  Sum_probs=143.5

Q ss_pred             CchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031408            3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (160)
Q Consensus         3 ~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (160)
                      ||..+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus         2 ~s~~~~~RL~kEl~~l~~~~~~~i~~~~~~----~~l~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i   77 (154)
T 2c2v_B            2 GSAGLPRRIIKETQRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKI   77 (154)
T ss_dssp             CSCSCCHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCC
T ss_pred             ccHHHHHHHHHHHHHHHhCCCCCEEEEECC----CchheEEEEEECCCCCCcCCCeEEEEEEcCCCCCCCCCEEEeecCc
Confidence            447889999999999999999999999876    7999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |||||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        78 ~HPnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~ar~~~~~~a~~  152 (154)
T 2c2v_B           78 YHPNVDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYAMN  152 (154)
T ss_dssp             CCTTBCTTCBBCCHHHHT--SCCTTCCHHHHHHHHHHHTTSCCCCCC--CHHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred             ccCcCccCCeEEchhccC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            999999999999999987  899999999999999999999999999999999999999999999999999999953

>1zdn_A Ubiquitin-conjugating enzyme E2S; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC; 1.93A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-52  Score=302.74  Aligned_cols=147  Identities=27%  Similarity=0.544  Sum_probs=143.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      ..+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||
T Consensus        12 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   87 (158)
T 1zdn_A           12 PHIIRLVYKEVTTLTADPPDGIKVFPNE----EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   87 (158)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECC----CChhheeEEEECCCCCCccCcEEEEEEEcCCCCCCCCCEEEeccCccc
Confidence            7789999999999999999999999865    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        88 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~d~~~f~~~a~~~t~~~A  158 (158)
T 1zdn_A           88 PNVGANGEICVNVLKR--DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  158 (158)
T ss_dssp             TTBCTTSBBCHHHHTT--TCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCCEEehhhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999987  8999999999999999999999999999999999999999999999999999997

>2ucz_A UBC7, ubiquitin conjugating enzyme; ubiquitin conjugation, ligase, yeast; 2.93A {Saccharomyces cerevisiae} SCOP: d.20.1.1

Probab=100.00  E-value=3.8e-52  Score=302.81  Aligned_cols=153  Identities=36%  Similarity=0.726  Sum_probs=144.2

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||  +.|.+||++|+++|+++++.|+++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus         1 M~--~~a~~RL~kEl~~l~~~~~~gi~~~~~~~---~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t   75 (165)
T 2ucz_A            1 MS--KTAQKRLLKELQQLIKDSPPGIVAGPKSE---NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTP   75 (165)
T ss_dssp             -C--HHHHHHHHHHHHHHHHSCCTTEEEEESSS---SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CC--hHHHHHHHHHHHHHHhCCCCCEEEEECCC---CCccEEEEEEECCCCCCccCcEEEEEEECCccCCCCCCEEEEeC
Confidence            78  78999999999999999999999988642   69999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHH
Q 031408           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRV  149 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~  149 (160)
                      ++|||||+.+|+||+++|..           .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++|
T Consensus        76 ~i~HPNv~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~y~~~v  155 (165)
T 2ucz_A           76 SILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQV  155 (165)
T ss_dssp             CCSCTTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHH
T ss_pred             CCccCCCCCCCcEeehhhCCccccccccCCCCCCCCCcCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHH
Confidence            99999999999999999941           2389999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCC
Q 031408          150 RQQAKQYPP  158 (160)
Q Consensus       150 r~~~~~~~~  158 (160)
                      |+|+++++.
T Consensus       156 ~~~~~~~~~  164 (165)
T 2ucz_A          156 KLSILKSLG  164 (165)
T ss_dssp             HHHHHHHTT
T ss_pred             HHHHHHHhh
Confidence            999999874

>1yh2_A HSPC150 protein similar to ubiquitin-conjugating enzyme; structural genomics consortium, HSCP150, ligase, SGC; 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=6.3e-52  Score=302.53  Aligned_cols=153  Identities=27%  Similarity=0.522  Sum_probs=146.0

Q ss_pred             CchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031408            3 GGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (160)
Q Consensus         3 ~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (160)
                      |+..+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus         1 gs~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~~l~~w~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i   76 (169)
T 1yh2_A            1 GSMQRASRLKRELHMLATEPPPGITCWQDK----DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPI   76 (169)
T ss_dssp             CCHHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCC
T ss_pred             CchHHHHHHHHHHHHHHhCCCCCEEEEeCC----CchheEEEEEECCCCCCccCCEEEEEEEeCCCCCCCCcEEEeecCC
Confidence            567899999999999999999999999876    7999999999999999999999999999999999999999999999


Q ss_pred             ccccccCCCceeecCCCC--CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           83 FHPNVYPSGTVCLSILNE--DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |||||+.+|+||+++|..  .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        77 ~HPNv~~~G~iCl~iL~~~~~~~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~~  155 (169)
T 1yh2_A           77 YHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHARQ  155 (169)
T ss_dssp             CBTTBCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             ccccCCcCCeEecccccCCcccCCCCCCcHHHHHHHHHHHHhCCCCcchHhHHHHHHHHhhHHHHHHHHHHHHHHHccc
Confidence            999999999999999982  12899999999999999999999999999999999999999999999999999999963

>2ayv_A Ubiquitin-conjugating enzyme E2; structural genomics, structural genomics consortium, ubiquit ubiquitin-conjugating enzyme, SGC, ligase; 2.00A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=9.3e-52  Score=300.59  Aligned_cols=147  Identities=33%  Similarity=0.692  Sum_probs=143.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~gi~~~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   95 (166)
T 2ayv_A           20 QGALKRINKELNDLSKDPPTNCSAGPVG----DDMFHWQATIMGPEDSPYSGGVFFLNIHFPSDYPFKPPKVNFTTKIYH   95 (166)
T ss_dssp             TTHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCcceeeEEEECCCCCCcCCCEEEEEEeCCCcCCCCCceeeeccCCcC
Confidence            5689999999999999999999999866    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||
T Consensus        96 PNI~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pn~~~Pln~~aa~l~~~d~~~f~~~ar~~~~~~A  166 (166)
T 2ayv_A           96 PNINSQGAICLDILKD--QWSPALTISKVLLSISSLLTDPNPDDPLVPEIAHLYKSDRMRYDQTAREWSQKYA  166 (166)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             CcCCCCCeEEcccccc--cCCCCCcHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            9999999999999997  8999999999999999999999999999999999999999999999999999997

>2c4o_A Ubiquitin-conjugating enzyme E2 D2; thioesterification, ligase, UBL conjugation pathway; HET: CME; 1.94A {Homo sapiens} SCOP: d.20.1.1 PDB: 2clw_A* 2c4p_A

Probab=100.00  E-value=1.6e-51  Score=299.12  Aligned_cols=148  Identities=33%  Similarity=0.685  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus        18 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegg~f~l~i~fp~~YP~~PP~v~F~T~i~H   93 (165)
T 2c4o_A           18 SMALKRIHKELNDLARDPPAQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   93 (165)
T ss_dssp             HHHHHHHHHHHHHHHSSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CCcceeEEEEECCCCCCccCceEEEEEECCCcCCCCCCEEEEecCCcC
Confidence            5689999999999999999999999866    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        94 PnV~~~G~ICl~iL~~--~W~P~~ti~~vL~si~~ll~~pn~~~P~n~~aa~~~~~d~~~y~~~ar~~~~~~a~  165 (165)
T 2c4o_A           94 PNINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAM  165 (165)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHTTC
T ss_pred             CcCCCCCeEeehhhcC--CCCCcCcHHHHHHHHHHHHhCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999997  89999999999999999999999999999999999999999999999999999984

>2bep_A Ubiquitin-conjugating enzyme E2-25 kDa; ligase, E2 conjugating enzyme, protein degradatio structural proteomics in europe, spine; 1.8A {Bos taurus} SCOP: d.20.1.1 PDB: 2bf8_A

Probab=100.00  E-value=1.7e-51  Score=297.69  Aligned_cols=152  Identities=30%  Similarity=0.534  Sum_probs=143.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031408            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (160)
                      |++++.+.+||++|+++|+++   ++.|+++.+..    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+
T Consensus         3 ~~Ms~~a~~RL~kEl~~l~~~~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~   78 (159)
T 2bep_A            3 MAMANIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   78 (159)
T ss_dssp             -CCCHHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             ccchHHHHHHHHHHHHHHHhcCCCCCCCEEEEeCC----CchheEEEEEECCCCCCccCCEEEEEEeCCCcCCCCCCEEE
Confidence            444478999999999999985   57899998876    78999999999999999999999999999999999999999


Q ss_pred             eccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        78 f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      |.|++|||||+ .+|+||+++|.+  +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|
T Consensus        79 f~t~i~HPni~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~  156 (159)
T 2bep_A           79 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY  156 (159)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             eeCCCCccCCCCCCCEEeChhhhc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            99999999999 599999999997  899999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 031408          157 PP  158 (160)
Q Consensus       157 ~~  158 (160)
                      |.
T Consensus       157 a~  158 (159)
T 2bep_A          157 AG  158 (159)
T ss_dssp             SC
T ss_pred             hc
Confidence            85

>3h8k_A Ubiquitin-conjugating enzyme E2 G2; alpha beta, all alpha, ligase, UBL conjugation pathway, endo reticulum, membrane, metal-binding; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 3fsh_A 2cyx_A 2kly_A

Probab=100.00  E-value=1.9e-51  Score=298.94  Aligned_cols=151  Identities=36%  Similarity=0.674  Sum_probs=143.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.|.|||++|+++|+++++.|+++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus         2 ~~a~~RL~kEl~~l~~~~~~gi~~~~~~~---~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (164)
T 3h8k_A            2 GTALKRLMAEYKQLTLNPPEGIVAGPMNE---ENFFEWEALIMGPEDTCFEFGVFPAILSFPLDYPLSPPKMRFTCEMFH   78 (164)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEECCC---CCccEEEEEEeCCCCCCCCCCEEEEEEECCCCCCCCCCEEEEcCCCcc
Confidence            56899999999999999999999988762   599999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031408           85 PNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA  153 (160)
Q Consensus        85 pnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~  153 (160)
                      |||+.+|+||+++|..           +++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+
T Consensus        79 PNV~~~G~iCl~iL~~~~~~~~~~~~~~~~W~p~~ti~~vL~~i~~ll~~pn~~~p~n~~aa~~~~~~~~~f~~~~~~~~  158 (164)
T 3h8k_A           79 PNIYPDGRVCISILHAPGDDPMGYESSAERWSPVQSVEKILLSVVSMLAEPNDESGANVDASKMWRDDREQFYKIAKQIV  158 (164)
T ss_dssp             TTBCTTSBBCCGGGSCSCSCCCSCCTTCCCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             CCCCCCCcEeeecccCcccccccccccccCCCCCCcHHHHHHHHHHHHcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999999972           13899999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q 031408          154 KQYPP  158 (160)
Q Consensus       154 ~~~~~  158 (160)
                      +++++
T Consensus       159 ~~s~~  163 (164)
T 3h8k_A          159 QKSLG  163 (164)
T ss_dssp             HHHHT
T ss_pred             HHhhc
Confidence            99864

>2r0j_A Ubiquitin carrier protein; ubiquitin conjugating, malaria, ligas conjugation pathway, structural genomics, structural genomi consortium; 1.85A {Plasmodium falciparum} PDB: 3e95_A

Probab=100.00  E-value=8.1e-52  Score=296.48  Aligned_cols=147  Identities=35%  Similarity=0.681  Sum_probs=142.2

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         2 ~~~RL~kEl~~l~~~~~~~i~~~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   77 (149)
T 2r0j_A            2 IPRRITKETQNLANEPPPGIMAVPVP----ENYRHFNILINGPDGTPYEGGTYKLELFLPEQYPMEPPKVRFLTKIYHPN   77 (149)
T ss_dssp             CCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECC----CcccEEEEEEECCCCCCcCCCEEEEEEeCCcccCCCCCeeEeccCCccCC
Confidence            35899999999999999999999866    79999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        78 v~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  148 (149)
T 2r0j_A           78 IDKLGRICLDILKD--KWSPALQIRTVLLSIQALLSSPEPDDPLDSKVAEHFKQDKNDAEHVARQWNKIYANN  148 (149)
T ss_dssp             BCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSSCHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCCCEEechhcCC--CCCCCCcHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHccC
Confidence            99999999999987  899999999999999999999999999999999999999999999999999999963

>2e2c_A Ubiquitin conjugating enzyme; ubiquitin conjugation, ubiquitin carrier protein, thioester ligase; 2.00A {Spisula solidissima} SCOP: d.20.1.1

Probab=100.00  E-value=1.7e-51  Score=296.85  Aligned_cols=147  Identities=34%  Similarity=0.609  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus         8 ~~~~~RL~kEl~~l~~~~~~~i~~~p~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   83 (156)
T 2e2c_A            8 HSVSKRLQQELRTLLMSGDPGITAFPDG----DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWH   83 (156)
T ss_dssp             CCHHHHHHHHHHHHHHHCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEECC----CCccEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCccc
Confidence            4689999999999999999999998865    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++||+|+++|++
T Consensus        84 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~pn~~~p~n~~aa~~~-~d~~~y~~~~~~~~~~~~~  154 (156)
T 2e2c_A           84 PNVDQSGNICLDILKE--NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMW-SNQTEYKKVLHEKYKTAQS  154 (156)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHT-TCHHHHHHHHHHHHHHHHH
T ss_pred             CCCccCceEECccccc--cCCCCCcHHHHHHHHHHHHhCCCCCCHHHHHHHHHh-cCHHHHHHHHHHHHHHhcc
Confidence            9999999999999987  899999999999999999999999999999999999 8999999999999999975

>1fxt_A Ubiquitin-conjugating enzyme E2-24 kDa; ligase; NMR {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1fzy_A

Probab=100.00  E-value=2e-51  Score=294.47  Aligned_cols=147  Identities=28%  Similarity=0.587  Sum_probs=141.5

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.+||++|+++|+++++.|+++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         2 ~~~RL~~El~~l~~~~~~~i~~~~~~~---~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (149)
T 1fxt_A            2 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             CHHHHHHHHHHHHHCGGGCCEEEESSS---SCSSEEEEEEECCSSSTTCSSEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             hHHHHHHHHHHHHhCCCCCEEEEECCC---CCceEEEEEEECCCCCCcCCcEEEEEEECCCCCCCCCCEEEEeCCCccCC
Confidence            479999999999999999999998762   48999999999999999999999999999999999999999999999999


Q ss_pred             ccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+. +|+||+++|.+  +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        79 i~~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~~~a~  149 (149)
T 1fxt_A           79 ISSVTGAICLDILKN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             BCSSSCCBCCHHHHT--SCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCSSHHHHHHHHHHHHHCC
T ss_pred             CcCCCCeEeCCcCCC--CCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            997 99999999987  89999999999999999999999999999999999999999999999999999985

>1jat_A Ubiquitin-conjugating enzyme E2-17.5 kDa; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 1jbb_A 2gmi_A 3hct_B 3hcu_B 4dhi_D 1j7d_B 4dhj_C 4dhz_F

Probab=100.00  E-value=2.1e-51  Score=296.10  Aligned_cols=148  Identities=32%  Similarity=0.634  Sum_probs=143.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         4 ~~~~~RL~kE~~~l~~~~~~~i~~~~~~----~~l~~w~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   79 (155)
T 1jat_A            4 ASLPKRIIKETEKLVSDPVPGITAEPHD----DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH   79 (155)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             HHHHHHHHHHHHHHHhCCCCCEEEEECC----CchhEEEEEEECCCCCCccCcEEEEEEEcCCCCCCCCCcceeeccccc
Confidence            3568999999999999999999998876    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++|.+  +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        80 Pnv~~~G~iCl~iL~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~r~~~~~~a~  151 (155)
T 1jat_A           80 PNIDRLGRICLDVLKT--NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK  151 (155)
T ss_dssp             TTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred             CCCCCCCEEEchhhcc--CCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            9999999999999987  89999999999999999999999999999999999999999999999999999995

>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A

Probab=100.00  E-value=9.4e-51  Score=303.85  Aligned_cols=151  Identities=30%  Similarity=0.545  Sum_probs=142.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031408            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (160)
                      ||  +.|.+||++|+++|+++   ++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+
T Consensus         2 Ms--~~a~~Rl~kEl~~l~~~~~~~~~~i~~~~~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~   75 (201)
T 3k9o_A            2 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   75 (201)
T ss_dssp             ----CTTHHHHHHHHHHHHTCHHHHTTSEEEEECS----TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEE
T ss_pred             Cc--HHHHHHHHHHHHHHHhCCCCCCCCEEEEECC----CCccEEEEEEECCCCCCCCCCEEEEEEECCCcCCCCCCccc
Confidence            77  78999999999999886   46899999876    79999999999999999999999999999999999999999


Q ss_pred             eccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           78 FPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        78 f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      |.|++|||||+ .+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++|
T Consensus        76 f~t~i~HPnv~~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~p~p~~p~n~~aa~~~~~~~~~f~~~a~~~~~~~  153 (201)
T 3k9o_A           76 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY  153 (201)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             cccCcccCCCcCCCCeeeCccccc--CCCCCCCHHHHHHHHHHHhcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            99999999999 599999999987  899999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 031408          157 PPV  159 (160)
Q Consensus       157 ~~~  159 (160)
                      |+.
T Consensus       154 a~~  156 (201)
T 3k9o_A          154 AGA  156 (201)
T ss_dssp             HCC
T ss_pred             ccc
Confidence            853

>2f4z_A Tgtwinscan_2721 - E2 domain; ubiquitin conjugating tgtwinscan_2721, structural genomics, structural genomics consortium, SGC; 2.11A {Toxoplasma gondii} SCOP: d.20.1.1

Probab=100.00  E-value=1.6e-50  Score=300.05  Aligned_cols=148  Identities=30%  Similarity=0.629  Sum_probs=139.7

Q ss_pred             hHHHHHHHHHHHHHHHcCC-------------CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCC
Q 031408            5 GIARGRLTEERKAWRKNHP-------------HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPS   71 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~-------------~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~   71 (160)
                      ..+.+||++|+++|+++++             .|+++.+.+    +|+++|+++|.||++|||+||+|+++|.||++||+
T Consensus        31 ~~a~~RL~kEl~~l~k~~~~~~~~p~~~~~~~~gi~v~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~  106 (193)
T 2f4z_A           31 PREQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVG----GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPY  106 (193)
T ss_dssp             -CHHHHHHHHHHHHHHC----------------CEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTT
T ss_pred             CHHHHHHHHHHHHHHhCCCccccccccccCCCCcEEEEEcC----CCcceEEEEEeCCCCCCcCCCEEEEEEECCCcCCC
Confidence            4588999999999999887             799998876    79999999999999999999999999999999999


Q ss_pred             CCCeeeeccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHH
Q 031408           72 KPPKCKFPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVR  150 (160)
Q Consensus        72 ~pP~v~f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r  150 (160)
                      +||+|+|.|++|||||+ .+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||
T Consensus       107 ~PP~V~F~T~i~HPNI~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~pnp~~P~n~~aa~l~~~d~~~f~~~ar  184 (193)
T 2f4z_A          107 NPPKMKFVTKIWHPNISSQTGAICLDILKH--EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAK  184 (193)
T ss_dssp             SCCEEEESSCCCBTTBCTTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHH
T ss_pred             CCCeEEEecCCccCCCcCCCCEEECccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHH
Confidence            99999999999999999 599999999988  899999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCC
Q 031408          151 QQAKQYPP  158 (160)
Q Consensus       151 ~~~~~~~~  158 (160)
                      +|+++||.
T Consensus       185 ~~t~~ya~  192 (193)
T 2f4z_A          185 LWTETFAK  192 (193)
T ss_dssp             HHHHHHCC
T ss_pred             HHHHHHcc
Confidence            99999996

>3bzh_A Ubiquitin-conjugating enzyme E2 E1; structural genomics consortium, ubiquitin-conjuga enzyme, ligase, SGC, UBL conjugation pathway; 1.60A {Homo sapiens} PDB: 1y6l_A

Probab=100.00  E-value=3.8e-50  Score=298.39  Aligned_cols=148  Identities=34%  Similarity=0.628  Sum_probs=143.4

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++||
T Consensus        47 s~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  122 (194)
T 3bzh_A           47 STSAKRIQKELADITLDPPPNCSAGPKG----DNIYEWRSTILGPPGSVYEGGVFFLDITFTPEYPFKPPKVTFRTRIYH  122 (194)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCB
T ss_pred             cHHHHHHHHHHHHHHhCCCCCceeeccc----CccccceEEEeCCCCCCccCCEEEEEEECCCcCCCCCccccccCCCcc
Confidence            4578999999999999999999999876    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+|+++|.+|+++|.++||+|+++||.
T Consensus       123 PNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~~aa~l~~~d~~~f~~~ar~~t~~ya~  194 (194)
T 3bzh_A          123 CNINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  194 (194)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ceECCCCceechhhhc--cCCCcCcHHHHHHHHHHHHhCCCCccchhHHHHHHHHHCHHHHHHHHHHHHHHhhC
Confidence            9999999999999987  89999999999999999999999999999999999999999999999999999984

>1i7k_A Ubiquitin-conjugating enzyme E2 H10; ligase; 1.95A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-50  Score=296.66  Aligned_cols=147  Identities=33%  Similarity=0.566  Sum_probs=141.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++||
T Consensus        29 ~~~~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H  104 (179)
T 1i7k_A           29 GPVGKRLQQELMTLMMSGDKGISAFPES----DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYH  104 (179)
T ss_dssp             -CHHHHHHHHHHHHHHHCCTTEEEEEET----TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCS
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcC----CcccccEEEEECCCCCCcCCCEEEEEEECCCcCCCCCceEEEecCCcc
Confidence            6789999999999999999999998866    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++| +|+++|.++||+++++++.
T Consensus       105 PNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~~aa~l~-~d~~~f~~~v~~~v~~~~~  175 (179)
T 1i7k_A          105 PNVDTQGNISLDILKE--KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELW-KNPTAFKKYLQETYSKQVT  175 (179)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHT-TSHHHHHHHHHHHHHTTCC
T ss_pred             CccccCCeEEcccCcC--cCCCCCCHHHHHHHHHHHHhCCCCcchhhHHHHHHh-hCHHHHHHHHHHHHHHHhc
Confidence            9999999999999987  899999999999999999999999999999999999 9999999999999999874

>2pwq_A Ubiquitin conjugating enzyme; structural genomics consortium, SGC, ligase; 1.90A {Plasmodium yoelii}

Probab=100.00  E-value=1.6e-50  Score=304.55  Aligned_cols=149  Identities=31%  Similarity=0.614  Sum_probs=144.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus        22 s~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~H   97 (216)
T 2pwq_A           22 SKELLRLQKELKDIENENVQEIDAHIKD----SNFFEWVGFIKGPEGTPYEGGHFTLAITIPNDYPYNPPKIKFVTKIWH   97 (216)
T ss_dssp             CHHHHHHHHHHHHHHHSCTTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             CHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccceeEEEEeCCCCCCccceEEEEEEECCCcCCCCCCcccccCCCcC
Confidence            5789999999999999999999999876    799999999999999999999999999999999999999999999999


Q ss_pred             cccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           85 PNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        85 pnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |||+ .+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        98 PNI~~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~dPln~eaa~~~~~d~~~f~~~ar~~t~~ya~~  171 (216)
T 2pwq_A           98 PNISSQTGAICLDVLKN--EWSPALTIRTALLSIQALLSDPQPDDPQDAEVAKMYKENHALFVKTASVWTKTFATG  171 (216)
T ss_dssp             TTBCTTTCBBCCHHHHH--HCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSCC
T ss_pred             CCCcCCCCEEEchhhcc--cCCCCCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhcCC
Confidence            9999 599999999987  899999999999999999999999999999999999999999999999999999963

>1wzv_A Ubiquitin-conjugating enzyme E2 L6; ligase; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1wzw_A 2kjh_A

Probab=100.00  E-value=4.2e-50  Score=289.33  Aligned_cols=146  Identities=26%  Similarity=0.570  Sum_probs=139.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEE-eecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVA-KPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~-~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      .+.+||++|+++|+++++.|+++ .+..    +|+++|+++|. |++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus         4 ~~~~RL~kEl~~l~~~~~~~i~~~~~~~----~~l~~w~~~I~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~H   78 (155)
T 1wzv_A            4 MASMRVVKELEDLQKKPPPYLRNLSSDD----ANVLVWHALLL-PDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYH   78 (155)
T ss_dssp             -CHHHHHHHHHHHHHSCCTTEEEEEECS----SCTTEEEEEEC-CCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCB
T ss_pred             hHHHHHHHHHHHHHhCCCCCEEEEecCC----CchheEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCCcceeeCCCcc
Confidence            47899999999999999999998 5555    89999999999 999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCC-CCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSIL-NEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l-~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++| ..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        79 PnV~~~G~iCl~iL~~~--~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~y~~~~r~~~~~~a~  151 (155)
T 1wzv_A           79 PNVDENGQICLPIISSE--NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV  151 (155)
T ss_dssp             TTBCTTCBCCCGGGCTT--TCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred             CcCCCCCeEeecCCCcc--CCCCCCcHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999999999999 55  89999999999999999999999999999999999999999999999999999985

>3fn1_B NEDD8-conjugating enzyme UBE2F; ligase, ATP-binding, cell cycle, nucleotide-binding, UBL CON pathway; 2.50A {Homo sapiens} PDB: 2edi_A

Probab=100.00  E-value=1.6e-49  Score=289.50  Aligned_cols=150  Identities=24%  Similarity=0.474  Sum_probs=141.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+...   +|++.|+++| ||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus        13 s~~~~RL~kEl~~l~~~~~~gi~~~~~~~---~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   88 (167)
T 3fn1_B           13 SVRDKLLVKEVAELEANLPCTCKVHFPDP---NKLHCFQLTV-TPDEGYYQGGKFQFETEVPDAYNMVPPKVKCLTKIWH   88 (167)
T ss_dssp             CHHHHHHHHHHHHHGGGSCTTEEEECSSS---SCTTEEEEEE-CCSSSTTTTCCEEEEEECCTTBTTBCCEEEECSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEeCCC---CcceeEEEEE-CCCCCccCCCEEEEEEECCCCCCCCCCeeEecCCccc
Confidence            46899999999999999999999986432   7899999999 8999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCC----CCCCCCcCCHHHHHHHHHHhhcC-CCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNE----DNGWRPAITVKQILVGIQDLLDQ-PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~----~~~W~p~~~i~~vl~~i~~ll~~-p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|+||+++|..    .++|+|+++|.+||.+|+++|.+ |++++|+|.+|+++|++|+++|.++||+|+++||.
T Consensus        89 Pnv~~~G~iCl~iL~~~~~~~~~W~p~~~i~~vl~~i~~ll~~~pn~~~p~n~eaa~~~~~~~~~f~~~~r~~~~~~A~  167 (167)
T 3fn1_B           89 PNITETGEICLSLLREHSIDGTGWAPTRTLKDVVWGLNSLFTDLLNFDDPLNIEAAEHHLRDKEDFRNKVDDYIKRYAR  167 (167)
T ss_dssp             SSBCTTCCBCCGGGSBCSSSTTSBCTTCCHHHHHHHHHHTTTTTCCSSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCCCCEEechhhccCCCCCCCCCCcCcHHHHHHHHHHHHcCCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            9999999999999975    24799999999999999999999 79999999999999999999999999999999984

>1yrv_A Ubiquitin-conjugating ligase MGC351130; structural genomics consortium, SGC, ubiquitin- conjugating enzyme; 2.18A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=4.7e-50  Score=292.27  Aligned_cols=146  Identities=29%  Similarity=0.537  Sum_probs=138.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus        22 ~~a~~RL~kEl~~l~~~~~~gi~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~i~H   97 (169)
T 1yrv_A           22 GRAYLLLHRDFCDLKENNYKGITAKPVS----EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFITIPFH   97 (169)
T ss_dssp             CHHHHHHHHHHHHHHHHCCTTEEEEECS----TTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESSCCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccccceeEEECCCCCCccceEEEEEEECCccCCCCCCcceecCCCcc
Confidence            6789999999999999999999998876    799999999999999999999999999999999999999999999999


Q ss_pred             ccc-cCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031408           85 PNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ  155 (160)
Q Consensus        85 pnv-~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~  155 (160)
                      ||| +.+|+||+++|...++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++ |++|++
T Consensus        98 PNI~~~~G~ICL~iL~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~Pln~eaa~l~~~d~~~y~~~-~~~v~~  168 (169)
T 1yrv_A           98 PNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTI-LRLFNR  168 (169)
T ss_dssp             TTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHH-HHHHC-
T ss_pred             CcccCCCCeEeehhhcCCcCCCCcCCHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHH-HHHhhC
Confidence            999 7899999999982228999999999999999999999999999999999999999999999 888864

>3rz3_A Ubiquitin-conjugating enzyme E2 R1; ubiquitin conjugating enzyme domain, E2 domain, ligase-ligas inhibitor complex; HET: U94; 2.30A {Homo sapiens} PDB: 2ob4_A

Probab=100.00  E-value=1.5e-49  Score=293.26  Aligned_cols=153  Identities=33%  Similarity=0.619  Sum_probs=140.1

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      |++ +.+.|||++|+++|+++++.|+++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus         3 m~~-~~a~kRL~kEl~~l~~~~~~gi~~~~~~~---~nl~~W~~~I~Gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t   78 (183)
T 3rz3_A            3 MGS-PSSQKALLLELKGLQEEPVEGFRVTLVDE---GDLYNWEVAIFGPPNTYYEGGYFKARLKFPIDYPYSPPAFRFLT   78 (183)
T ss_dssp             --C-CHHHHHHHHHHHHHHHSCCTTEEEEECTT---CCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESS
T ss_pred             Ccc-hHHHHHHHHHHHHHHhCCCCCEEEEecCc---cchhheeeeeeCCCCCCCCCCeEEEEEECCCCCCCCCCeeEecC
Confidence            443 56899999999999999999999984332   79999999999999999999999999999999999999999999


Q ss_pred             CcccccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhh------CHH
Q 031408           81 GFFHPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ------DPA  143 (160)
Q Consensus        81 ~i~Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~------~~~  143 (160)
                      ++|||||+.+|+||+++|..           .++|+|+++|++||.+|+++|.+|++++|+|.+|+.+|++      |++
T Consensus        79 ~i~HPnV~~~G~iClsiL~~~~~~~~~~~~~~~~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~~~~~~~~~~  158 (183)
T 3rz3_A           79 KMWHPNIYETGDVCISILHPPVDDPQSGELPSERWNPTQNVRTILLSVISLLNEPNTFSPANVDASVMYRKWKESKGKDR  158 (183)
T ss_dssp             CCCCTTBCTTSBBCCTTC--------------CCCCTTCCHHHHHHHHHHHHHSCCCSSCSSHHHHHHHHHHHHTTTCCC
T ss_pred             CCccCCCCCCCcEehhhcCcccccccccccccCCCCCcCcHHHHHHHHHHHHhCCCCCCcccHHHHHHHHhcccccccHH
Confidence            99999999999999999972           1389999999999999999999999999999999999998      789


Q ss_pred             HHHHHHHHHHHhcC
Q 031408          144 EYKRRVRQQAKQYP  157 (160)
Q Consensus       144 ~f~~~~r~~~~~~~  157 (160)
                      +|.+++|++|++++
T Consensus       159 ~y~~~v~~~v~~s~  172 (183)
T 3rz3_A          159 EYTDIIRKQVLGTK  172 (183)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999875

>3e46_A Ubiquitin-conjugating enzyme E2-25 kDa; huntington interacting, ligase, alternative splicing, cytoplasm, UBL conjugation, UBL conjugation pathway; 1.86A {Homo sapiens} SCOP: a.5.2.1 d.20.1.1 PDB: 3f92_A*

Probab=100.00  E-value=2.2e-49  Score=304.34  Aligned_cols=149  Identities=30%  Similarity=0.540  Sum_probs=143.2

Q ss_pred             hHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408            5 GIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG   81 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (160)
                      +.+.+||++|+++|+++   ++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+
T Consensus        56 ~~a~~RL~kEl~~l~~~~~~~~~gi~v~p~~----dnl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~V~F~T~  131 (253)
T 3e46_A           56 NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVRFITK  131 (253)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----TTSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCCCEEEEECC----CcccEEEEEEECCCCCCcCCCEEEEEEECCCCCCCCCCeeeecCC
Confidence            78999999999999886   47899999876    799999999999999999999999999999999999999999999


Q ss_pred             ccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           82 FFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        82 i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      +|||||+ .+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus       132 i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~~ll~~pnp~~Pln~eaa~l~~~d~~~f~~~ar~~t~~yA~~  208 (253)
T 3e46_A          132 IWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVYAGA  208 (253)
T ss_dssp             CCBTTBCTTTCBBCCGGGTT--CCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHHCC
T ss_pred             CccCCccCCCCeeecccccC--CCCCCCCHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhccc
Confidence            9999999 599999999987  899999999999999999999999999999999999999999999999999999863

>1tte_A Ubiquitin-conjugating enzyme E2-24 kDa; UBC1, ubiquitin-dependent degradation, ligase; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1 d.20.1.1

Probab=100.00  E-value=6.4e-50  Score=301.09  Aligned_cols=147  Identities=28%  Similarity=0.586  Sum_probs=141.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.+||++|+++|+++++.|+++.+..+   +++++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         3 a~~RL~kEl~~l~~~~~~gi~~~p~~~---~~l~~w~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~V~F~T~i~HPN   79 (215)
T 1tte_A            3 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   79 (215)
T ss_dssp             THHHHHHHHHHHHTTTCTTCEECCCSS---SSCCEEEEECCEEEEETTEEECCEEEEECCSCSSSCCCEEEETTTCCCSS
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEECCC---ccccccEEEEeCCCCCCcCCCEEEEEEeCCccCCCCCCcccccCCCccCc
Confidence            689999999999999999999988652   46779999999999999999999999999999999999999999999999


Q ss_pred             ccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+. +|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus        80 I~~~~G~ICL~iL~~--~WsP~~ti~~VL~sI~sLL~~Pnp~~Pln~eaa~~~~~d~~~f~~~ar~~t~~yA~  150 (215)
T 1tte_A           80 ISSVTGAICLDILRN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  150 (215)
T ss_dssp             SCSSSSCCCSSTTTC--CSCTTCCHHHHHHHHHHHHTSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHSSC
T ss_pred             CcCCCCEEECccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            998 99999999987  89999999999999999999999999999999999999999999999999999995

>2y9m_A Ubiquitin-conjugating enzyme E2-21 kDa; ligase-transport protein complex, ubiquitin conjugating ENZY complex, peroxisomal protein; 2.60A {Saccharomyces cerevisiae} PDB: 2y9p_A 2y9o_A

Probab=100.00  E-value=7.8e-49  Score=286.86  Aligned_cols=152  Identities=27%  Similarity=0.429  Sum_probs=138.1

Q ss_pred             CCCchHHHHHHHHHHHHHHH-c-C------CC---CeEEee-cCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCC
Q 031408            1 MSGGGIARGRLTEERKAWRK-N-H------PH---GFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSED   68 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~-~-~------~~---~~~~~~-~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~   68 (160)
                      |++++.+.+||++|+++|++ + +      +.   ++.+.+ ..    +|+++|+++|.||++|||+||+|+++|.||++
T Consensus         1 ~~Ms~~~~~RL~kEl~~l~~~~~~~~~~~~p~~g~~~~~~p~~~----~nl~~w~~~I~Gp~~tpyegg~f~~~i~fp~~   76 (172)
T 2y9m_A            1 GAMADTCMSRIVKEYKVILKTLASDDPIANPYRGIIESLNPIDE----TDLSKWEAIISGPSDTPYENHQFRILIEVPSS   76 (172)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHTCCCTTTCTTTTTEEEEEESST----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTT
T ss_pred             CCCcHHHHHHHHHHHHHHHhccCCcccccCCCCcceEEEecCCC----CchhEEEEEEECCCCCcccCCEEEEEEECCCc
Confidence            34448899999999999998 5 3      32   456666 33    79999999999999999999999999999999


Q ss_pred             CCCCCCeeeecc-Cccccccc-CCCceeecCCC-CCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhh-CHHH
Q 031408           69 YPSKPPKCKFPQ-GFFHPNVY-PSGTVCLSILN-EDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQ-DPAE  144 (160)
Q Consensus        69 YP~~pP~v~f~t-~i~Hpnv~-~~G~icl~~l~-~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~-~~~~  144 (160)
                      ||++||+|+|.| ++|||||+ .+|+||+++|. +  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++ |+++
T Consensus        77 YP~~PP~v~f~t~~i~HPni~~~~G~iCl~iL~~~--~W~p~~~i~~vL~si~~ll~~p~~~~p~n~~aa~~~~~~d~~~  154 (172)
T 2y9m_A           77 YPMNPPKISFMQNNILHCNVKSATGEICLNILKPE--EWTPVWDLLHCVHAVWRLLREPVCDSPLDVDIGNIIRCGDMSA  154 (172)
T ss_dssp             TTTSCCEEEECTTSCCCTTEETTTTEECCGGGSTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHTTTCHHH
T ss_pred             CCCCCCEEEEeeCCeecCCCcCCCCEEeccccCCC--CCCCcCcHHHHHHHHHHHHhCCCCCCccCHHHHHHHHhCCHHH
Confidence            999999999999 99999996 79999999998 5  89999999999999999999999999999999999999 9999


Q ss_pred             HHHHHHHHHHhcCC
Q 031408          145 YKRRVRQQAKQYPP  158 (160)
Q Consensus       145 f~~~~r~~~~~~~~  158 (160)
                      |.++||+|+++++.
T Consensus       155 f~~~~~~~~~~~~~  168 (172)
T 2y9m_A          155 YQGIVKYFLAERER  168 (172)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999863

>2awf_A Ubiquitin-conjugating enzyme E2 G1; ligase, UBL conjugation pathway, structural genomics, structural genomics consortium SGC; 2.10A {Homo sapiens} SCOP: d.20.1.1 PDB: 1pzv_A

Probab=100.00  E-value=2.5e-49  Score=289.41  Aligned_cols=146  Identities=36%  Similarity=0.616  Sum_probs=110.9

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            4 GGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      ++.+.+||++|+++|+++++.|+++.+..+   +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus        15 ~~~~~~rL~kEl~~l~~~~~~gi~~~p~~~---~nl~~W~~~I~GP~~TpYegG~f~~~i~fp~~YP~~PP~v~F~T~i~   91 (172)
T 2awf_A           15 VPRGSLLLRRQLAELNKNPVEGFSAGLIDD---NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIW   91 (172)
T ss_dssp             CCTTHHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCC
T ss_pred             hHHHHHHHHHHHHHHHhCCCCCEEEEECCC---ccccccEEEEeCCCCCCcCCcEEEEEEECCcccCCCCCcccccCCCc
Confidence            357899999999999999999999988652   69999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHH-HHHHHHHH
Q 031408           84 HPNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPA-EYKRRVRQ  151 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~-~f~~~~r~  151 (160)
                      ||||+.+|+||+++|..           .++|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|++ +|.++||+
T Consensus        92 HPNV~~~G~IClsiL~~~~~d~~~~~~~~~~WsP~~ti~~vL~sI~sll~~Pn~~~p~n~~aa~~~~~d~~~~f~~~vr~  171 (172)
T 2awf_A           92 HPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADPNGDSPANVDAAKEWREDRNGEFKRKVAR  171 (172)
T ss_dssp             CTTBCTTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC----------------------------
T ss_pred             cCCCCCCCcEehhhcCCcccccccccccCCCCCCcCcHHHHHHHHHHHHHCcCCCCccCHHHHHHHHHCcHHHHHHHHHh
Confidence            99999999999999973           2489999999999999999999999999999999999999999 99999997


Q ss_pred             H
Q 031408          152 Q  152 (160)
Q Consensus       152 ~  152 (160)
                      +
T Consensus       172 ~  172 (172)
T 2awf_A          172 C  172 (172)
T ss_dssp             -
T ss_pred             C
Confidence            5

>1c4z_D UBCH7, ubiquitin conjugating enzyme E2; bilobal structure, elongated shape, E3 ubiquitin ligase, E2 ubiquitin conjugating enzyme; 2.60A {Homo sapiens} SCOP: d.20.1.1 PDB: 1fbv_C* 3sy2_C 3sqv_C

Probab=100.00  E-value=3e-49  Score=284.62  Aligned_cols=148  Identities=27%  Similarity=0.590  Sum_probs=136.9

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      |.+||++|+++|+++++.|+.+.+..+   +|+++|+++|. |++|||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         3 a~~RL~kEl~~l~~~~~~~~~~~~~~~---~~l~~w~~~i~-P~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~HPn   78 (154)
T 1c4z_D            3 ASRRLMKELEEIRKCGMKNFRNIQVDE---ANLLTWQGLIV-PDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPN   78 (154)
T ss_dssp             -CTTHHHHHTTCSSSCCSSCEEECSSC---SSSSEEEEEEC-CCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEeeCCC---CchheEEEEEe-CCCCCccCCeEEEEEEeCCCCCCCCCEEEEeCCCcccc
Confidence            679999999999999999998655332   79999999998 99999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |+.+|+||+++|..+ +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        79 v~~~G~iCl~iL~~~-~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~aa~~~~~~~~~f~~~~~~~~~~~a~~  150 (154)
T 1c4z_D           79 IDEKGQVCLPVISAE-NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKYGEK  150 (154)
T ss_dssp             BCTTCBBCCTTTSSS-SCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC---
T ss_pred             CCCCCEEECCCCCCC-CCCCCCcHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHhHHHHHHHHHHHHHHhccc
Confidence            999999999999732 899999999999999999999999999999999999999999999999999999963

>2z5d_A Ubiquitin-conjugating enzyme E2 H; UBE2H, SGC, ligase, structural genomics, structural genomics consortium; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.3e-49  Score=289.08  Aligned_cols=148  Identities=28%  Similarity=0.552  Sum_probs=136.9

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||+.+.+.+||++|+++|+.   .|+++.+.     +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|
T Consensus        20 ms~~~~a~~RL~kEl~~l~~---~g~~v~~~-----ddl~~W~~~I~GP~~tpYegG~f~l~i~fp~~YP~~PP~V~F~t   91 (179)
T 2z5d_A           20 MSSPSPGKRRMDTDVIKLIE---SKHEVTIL-----GGLNEFVVKFYGPQGTPYEGGVWKVRVDLPDKYPFKSPSIGFMN   91 (179)
T ss_dssp             ---CCHHHHHHHHHHHHHHH---SSSCEEEE-----EETTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESS
T ss_pred             CCCchHHHHHHHHHHHhcCc---CCCEEEEC-----CCCceeEEEEECCCCCCccCCEEEEEeeCCCCCCCCCceEEEec
Confidence            66445689999999999985   47777764     36799999999999999999999999999999999999999999


Q ss_pred             CcccccccC-CCceeecCCCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           81 GFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        81 ~i~Hpnv~~-~G~icl~~l~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ++|||||+. +|+||+++|.+  +|+|+++|.+||.+ |+++|.+|++++|+|.+||++|++|+++|.++||+|+++||.
T Consensus        92 ~i~HPNV~~~~G~ICL~iL~~--~WsP~~ti~~iL~s~I~~Ll~~Pn~~~p~n~eaa~~~~~d~~~y~~~vr~~~~~~a~  169 (179)
T 2z5d_A           92 KIFHPNIDEASGTVCLDVINQ--TWTALYDLTNIFESFLPQLLAYPNPIDPLNGDAAAMYLHRPEEYKQKIKEYIQKYAT  169 (179)
T ss_dssp             CCCBTTBCTTTCBBCHHHHHH--HCCTTCCTTHHHHTHHHHHHHSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSS
T ss_pred             CCccCcCCCCCCeEecccccc--CCCCCCCHHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHcc
Confidence            999999998 99999999987  89999999999999 999999999999999999999999999999999999999985

>2onu_A Ubiquitin-conjugating enzyme, putative; UBC, plasmodium FAL structural genomics consortium, SGC, ligase; HET: PG4; 2.38A {Plasmodium falciparum}

Probab=100.00  E-value=4.2e-49  Score=283.05  Aligned_cols=144  Identities=27%  Similarity=0.557  Sum_probs=136.3

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.+||++|+++++++   |+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         3 a~~Rl~kEl~~l~~~---~~~v~~~~----~~l~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   75 (152)
T 2onu_A            3 SLTRKQCDFTKLIMA---GYDLELNN----GSTQDFDVMFHGPNGTAYEGGIWKVHVTLPDDYPFASPSIGFMNKLLHPN   75 (152)
T ss_dssp             CCCHHHHTHHHHHHH---TCCEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCCTT
T ss_pred             HHHHHHHHHHhcCcC---CCEEEEcc----CccceEEEEEECCCCCcccceEEEEEEcCcccCCCCCCeEEEecCCccCc
Confidence            579999999999875   67777765    79999999999999999999999999999999999999999999999999


Q ss_pred             cc-CCCceeecCCCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           87 VY-PSGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        87 v~-~~G~icl~~l~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |+ .+|+||+++|..  +|+|++++.+||.+ |++||.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        76 i~~~~G~iCl~il~~--~W~p~~~i~~vl~~ii~~Ll~~Pn~~~P~n~~aa~~~~~d~~~y~~~v~~~~~~~a~~  148 (152)
T 2onu_A           76 VDEASGSVCLDVINQ--TWTPLYSLVNVFEVFLPQLLTYPNPSDPLNSDAASLLMKDKNIYEEKVKEYVKLYASK  148 (152)
T ss_dssp             BCTTTCBBCHHHHHH--HCCTTCCHHHHHHTHHHHHHHSCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHSCG
T ss_pred             CcCcCCeEecccccc--cCCCCCCHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhccC
Confidence            99 499999999987  89999999999998 6899999999999999999999999999999999999999963

>1y8x_A Ubiquitin-conjugating enzyme E2 M; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-47  Score=277.55  Aligned_cols=142  Identities=26%  Similarity=0.556  Sum_probs=135.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      +.+.+||++|+++|  +++.|+++. +..    +|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|
T Consensus         5 ~~~~~RL~kEl~~l--~~~~~~~~~~~~~----~~l~~w~~~i-gp~~tpyegg~f~~~i~fp~~YP~~PP~v~f~t~i~   77 (160)
T 1y8x_A            5 SAAQLRIQKDINEL--NLPKTCDISFSDP----DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVY   77 (160)
T ss_dssp             CHHHHHHHHHHHTC--CCCTTEEEECSST----TCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCC
T ss_pred             cHHHHHHHHHHHhc--CCCCCeEEEeccC----CccceEEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCEEEEecCCc
Confidence            46899999999999  578899987 554    7999999998 999999999999999999999999999999999999


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ  155 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~  155 (160)
                      ||||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++.
T Consensus        78 HPnv~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~Pn~~~p~n~~aa~~~~~~~~~f~~~v~~~v~~  147 (160)
T 1y8x_A           78 HPNIDLEGNVCLNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  147 (160)
T ss_dssp             BTTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHS
T ss_pred             cCcCCCCCeEEcccchh--hccCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            99999999999999987  89999999999999999999999999999999999999999999999999984

>2nvu_C NEDD8-conjugating enzyme UBC12; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=2.4e-47  Score=280.58  Aligned_cols=143  Identities=25%  Similarity=0.528  Sum_probs=136.1

Q ss_pred             chHHHHHHHHHHHHHHHcCCCCeEEe-ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031408            4 GGIARGRLTEERKAWRKNHPHGFVAK-PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (160)
Q Consensus         4 ~~~~~~Rl~~E~~~l~~~~~~~~~~~-~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (160)
                      ++.+.+||++|+++|  +++.|+++. +..    +|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus        24 ~~~~~~RL~kEl~~l--~~~~~i~~~~p~~----~nl~~W~~~i-gP~~tpYegg~f~~~i~fp~~YP~~PP~v~F~t~i   96 (180)
T 2nvu_C           24 ASAAQLRIQKDINEL--NLPKTCDISFSDP----DDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMV   96 (180)
T ss_dssp             CCHHHHHHHHHHHTC--CCCTTEEEECSST----TCTTEEEEEE-CCCSGGGTTBCEEEEEECCTTTTTSCCEEEECSCC
T ss_pred             ccHHHHHHHHHHHhc--CCCCCeEEEeccc----ccccceEEEE-CCCCCCCCCCEEEEEEeCCCcCCCCCCcCceeccC
Confidence            467899999999999  578899987 554    7999999998 99999999999999999999999999999999999


Q ss_pred             ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHh
Q 031408           83 FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQ  155 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~  155 (160)
                      |||||+.+|.||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||.+|++|+++|.++||++++.
T Consensus        97 ~HPNV~~~G~iCl~iL~~--~W~p~~~i~~vL~si~~ll~~Pn~~~p~n~~aa~~~~~d~~~f~~~v~~~v~~  167 (180)
T 2nvu_C           97 YHPNIDLEGNVALNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRG  167 (180)
T ss_dssp             CBTTBCTTSBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHS
T ss_pred             ccCCCCCCCcEEcccccc--cCCCCCCHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHhh
Confidence            999999999999999987  89999999999999999999999999999999999999999999999999985

>1yf9_A Ubiquitin carrier protein 4; SGPP, structural genomics, PSI, protein structure initiative ubiquitin conjugating enzyme; 2.00A {Leishmania major} SCOP: d.20.1.1

Probab=100.00  E-value=1.2e-47  Score=279.98  Aligned_cols=143  Identities=25%  Similarity=0.445  Sum_probs=133.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      .+.+||++|+++|++++. ++   +..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||
T Consensus        12 ~~~~RL~~El~~l~~~~~-~v---~~~----~~l~~w~~~I~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~F~t~i~HP   83 (171)
T 1yf9_A           12 RSNRRREMDYMRLCNSTR-KV---YPS----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHP   83 (171)
T ss_dssp             -CCHHHHHHHHHHHSSSS-CE---EEC----SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBT
T ss_pred             cHHHHHHHHHHHHHhCCC-CC---CCC----CCceEEEEEEECCCCCCccCceEEEEEEcCCCCCCCCCeEEeecCcccc
Confidence            467999999999998873 43   223    7999999999999999999999999999999999999999999999999


Q ss_pred             ccc-CCCceeecCCCCCCCCCCcCCHHHHHHHH-HHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           86 NVY-PSGTVCLSILNEDNGWRPAITVKQILVGI-QDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        86 nv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i-~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ||+ .+|+||+++|.+  +|+|+++|.+||.+| ++||.+|++++|+|.+|+.+|++|+++|.++||+|+++||.
T Consensus        84 Ni~~~~G~iCl~iL~~--~W~p~~~i~~vL~sil~~ll~~Pn~~~p~n~~aa~~~~~d~~~y~~~vr~~~~~~a~  156 (171)
T 1yf9_A           84 NVDERSGSVCLDVINQ--TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT  156 (171)
T ss_dssp             TBCTTTCBBCHHHHHH--HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             cCcccCCeEecccccc--CCCCCCcHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHcC
Confidence            999 599999999987  899999999999997 79999999999999999999999999999999999999985

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=100.00  E-value=1.3e-46  Score=306.60  Aligned_cols=149  Identities=32%  Similarity=0.648  Sum_probs=144.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.|.|||++|+++|+++++.|+++.|..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++||
T Consensus         2 s~a~~RL~kEl~~l~~~~~~~~~~~p~~----~nl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~H   77 (399)
T 4ddg_A            2 AMALKRIHKELNDLARDPPAQCSAGPVG----DDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYH   77 (399)
T ss_dssp             HHHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSSSTTCEEEEEEECCSSTTTSCCEEEESSCCCC
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CcceEEEEEEECCCCCCCCCCEEEEEEECCcccCCCCcEEEeeccccc
Confidence            5789999999999999999999999876    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPPV  159 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~~  159 (160)
                      |||+.+|+||+++|..  +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||..
T Consensus        78 Pnv~~~G~iCl~il~~--~W~p~~~i~~vL~~i~~ll~~pnp~~p~n~~aa~~~~~d~~~y~~~~~~~~~~~a~~  150 (399)
T 4ddg_A           78 PNINSNGSISLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDREKYNRIAREWTQKYAMG  150 (399)
T ss_dssp             TTBCTTCBBCCGGGTT--SCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHTSC
T ss_pred             cccCCCCeEeCccccc--CCCccccHHHHHHHHHHHHcCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHHhhcc
Confidence            9999999999999987  899999999999999999999999999999999999999999999999999999963

>3o2u_A NEDD8-conjugating enzyme UBC12; E2 conjugase, ligase; 2.00A {Saccharomyces cerevisiae} PDB: 3tdi_C

Probab=100.00  E-value=3e-46  Score=276.79  Aligned_cols=144  Identities=31%  Similarity=0.537  Sum_probs=136.1

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEe----ecCCCCCCCcc---eEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAK----PETKDGSVNLM---IWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~----~~~~~~~~~~~---~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (160)
                      +.|.+||++|+++|+  ++.|+++.    +..    +|++   +|+++|. |++|||+||+|++.|.||++||++||+|+
T Consensus        28 s~a~~RL~kEl~~l~--~~~~i~~~~~~~p~~----~nl~~~~~w~~~I~-p~~tpyegg~f~~~i~fp~~YP~~PP~v~  100 (190)
T 3o2u_A           28 SAARIRLKRDLDSLD--LPPTVTLNVITSPDS----ADRSQSPKLEVIVR-PDEGYYNYGSINFNLDFNEVYPIEPPKVV  100 (190)
T ss_dssp             CHHHHHHHHHHHTCC--CCTTEEEEEEECTTC----CCTTSCCEEEEEEC-CSSSTTTTCCEEEEEECCTTTTTSCCEEE
T ss_pred             cHHHHHHHHHHHhcc--CCCCEEEEecCCCCC----ccCCcCCeEEEEEc-CCCCCCCCCEEEEEEECCCCCCCCCceeE
Confidence            568999999999997  77899987    544    7999   9999997 88899999999999999999999999999


Q ss_pred             eccCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           78 FPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        78 f~t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |.|++|||||+.+|+||+++|..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++.+.
T Consensus       101 f~t~i~HPnV~~~G~iCl~iL~~--~W~p~~~i~~vL~~i~~ll~~pn~~~pln~~aa~~~~~d~~~f~~~ar~~~~~~~  178 (190)
T 3o2u_A          101 CLKKIFHPNIDLKGNVCLNILRE--DWSPALDLQSIITGLLFLFLEPNPNDPLNKDAAKLLCEGEKEFAEAVRLTMSGGS  178 (190)
T ss_dssp             ECSCCCCTTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHTCHHHHHHHHHHHHBTCE
T ss_pred             EecCcccCCCCCCCeEechhccC--CCCCCCCHHHHHHHHHHHHhCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHhcC
Confidence            99999999999999999999987  8999999999999999999999999999999999999999999999999997653

>4ds2_A Ubiquitin-conjugating enzyme E2, putative; structural genomics, PSI, protein structure initiative; 2.63A {Trypanosoma cruzi}

Probab=100.00  E-value=7.9e-46  Score=269.88  Aligned_cols=143  Identities=20%  Similarity=0.451  Sum_probs=133.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHcC------------CCCeEEeecCCCCCCCcceEEEEEcCCCCCCCC--CCEEEEEEEeC
Q 031408            1 MSGGGIARGRLTEERKAWRKNH------------PHGFVAKPETKDGSVNLMIWECIIPGKTGTDWE--GGYFPLTLYFS   66 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~------------~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~--gg~f~~~i~fp   66 (160)
                      ||  +.+.|||++|+++|++++            +.++.+.+..    +|+++|+++|.||++|||+  ||.|++.|.||
T Consensus         5 Ms--~~a~kRL~kEl~~l~~~~~~~~~~~~~~~~~~~i~~~~~~----~nl~~w~~~i~Gp~~tpye~~gg~f~~~i~fp   78 (167)
T 4ds2_A            5 MK--NISNKRIIKDLKLLLEEVDANNEANSSGSPHSTAIFSVDT----DTIYNWILKVKAPADSVYGGAGNTYQLSVLFS   78 (167)
T ss_dssp             CC--CCCCHHHHHHHHHHHHHHHHHTTC----CCSSCEEEEEEE----SSTTEEEEEEECCTTSGGGTTCCEEEEEEECC
T ss_pred             cc--HHHHHHHHHHHHHHHhCcccccccccccCCCCcEEEEeCC----CcccEEEEEEECCCCCCccCCCCEEEEEEECC
Confidence            67  778999999999999987            6788888876    8999999999999999999  99999999999


Q ss_pred             CCCCCCCCeeeeccCcccccccCCCceeecCCCCCCCCCCcCCHHHHHH-HHHHhhcC--CCCCCccCHHHHHHHhhCHH
Q 031408           67 EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILV-GIQDLLDQ--PNPADPAQTDGYQLFIQDPA  143 (160)
Q Consensus        67 ~~YP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~-~i~~ll~~--p~~~~p~n~~a~~~~~~~~~  143 (160)
                      ++||++||+|+|.|++|||||+.+|+||+++|..  +|+|++++.++|. .|++++.+  |++++|+|.+||++|++|++
T Consensus        79 ~~YP~~pP~v~f~t~i~HPnv~~~G~iCl~il~~--~W~p~~~i~~vll~~l~~l~~~~~pn~~~p~n~eaa~l~~~d~~  156 (167)
T 4ds2_A           79 DDYPHEPPTVRFVTPVYSPLVTGEGGICDRMVND--FWTPDQHASDVIKLVLDRVFSQYKSRRDDDVNPEARHYLEKFPQ  156 (167)
T ss_dssp             TTTTTSCCEEEESSCCCCSSCCTTSCCCTHHHHT--TCCTTSCHHHHHHHHHHHHHTSTTSCCSCCCCHHHHHHHHHCHH
T ss_pred             CCCCCCCCEEEEeCCcccccCCCCCEEEcccCcC--CCCCCCChHHHHHHHHHHHHhcCCCCCcchHhHHHHHHHHHCHH
Confidence            9999999999999999999999999999999987  8999999999754 67777764  89999999999999999999


Q ss_pred             HHHHHHHH
Q 031408          144 EYKRRVRQ  151 (160)
Q Consensus       144 ~f~~~~r~  151 (160)
                      +|.++||+
T Consensus       157 ~f~~~vrr  164 (167)
T 4ds2_A          157 DFAARVRR  164 (167)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhh
Confidence            99999983

>3ceg_A Baculoviral IAP repeat-containing protein 6; apoptosis, ligase, protease inhibitor, thiol protease inhibitor, UBL conjugation pathway; HET: MSE; 2.01A {Homo sapiens}

Probab=100.00  E-value=4.2e-43  Score=276.46  Aligned_cols=150  Identities=30%  Similarity=0.560  Sum_probs=136.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC----eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            5 GIARGRLTEERKAWRKNHPHG----FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~----~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ..+.+||++|+++|+++++.|    +.+.+..    +|++.|+++|.||++|||+||+|+|.|.||++||++||+|+|.|
T Consensus        75 ~~~~kRL~kEl~~L~k~~p~g~~~~i~v~~~e----dnl~~w~~~I~GP~~TpYegG~F~l~I~fP~dYP~~PP~V~F~T  150 (323)
T 3ceg_A           75 AARARRLAQEAVTLSTSLPLSSSSSVFVRCDE----ERLDIMKVLITGPADTPYANGCFEFDVYFPQDYPSSPPLVNLET  150 (323)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSSCCEEEEEES----SCTTEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEECC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcccceeecccC----CCccccEEEEeCCCCCCcCCCEEEEEEeCCCCCCCCCCeEEEec
Confidence            789999999999999998875    4444544    79999999999999999999999999999999999999999999


Q ss_pred             C-----cccccccCCCceeecCCCC-----CCCCCCcC-CHHHHHHHHHHhhc--CCCCCCccCHHH--HHHHhhCHHHH
Q 031408           81 G-----FFHPNVYPSGTVCLSILNE-----DNGWRPAI-TVKQILVGIQDLLD--QPNPADPAQTDG--YQLFIQDPAEY  145 (160)
Q Consensus        81 ~-----i~Hpnv~~~G~icl~~l~~-----~~~W~p~~-~i~~vl~~i~~ll~--~p~~~~p~n~~a--~~~~~~~~~~f  145 (160)
                      +     +|||||+.+|+||+++|..     .++|+|++ +|.+||.+|++||.  +|++++|+|.++  +.++.+|+++|
T Consensus       151 ~~g~~~ifHPNV~~~G~ICLsiL~~~~g~~~e~WsPa~stI~~VLlsIqsLL~~~~Pn~~dP~~~~a~a~~~~~~d~~~Y  230 (323)
T 3ceg_A          151 TGGHSVRFNPNLYNDGKVCLSILNTWHGRPEEKWNPQTSSFLQVLVSVQSLILVAEPYFNEPGYERSRGTPSGTQSSREY  230 (323)
T ss_dssp             STTTTCCCBTTBCTTCBBCCGGGTSSCCCGGGSCCTTTCCHHHHHHHHHHHTSCSSGGGGSTTGGGGTTSHHHHHHHHHH
T ss_pred             cCCCcccccCCCCcCCeEechhhccccCCCcCCCCcCcCCHHHHHHHHHHHHcCCCCCCCCccCHHHHHhhhhhhhHHHH
Confidence            8     9999999999999999972     13899999 89999999999995  777899999987  57899999999


Q ss_pred             HHHHHHHHHhcCC
Q 031408          146 KRRVRQQAKQYPP  158 (160)
Q Consensus       146 ~~~~r~~~~~~~~  158 (160)
                      .++||+|+.+||.
T Consensus       231 ~~~vr~~t~k~A~  243 (323)
T 3ceg_A          231 DGNIRQATVKWAM  243 (323)
T ss_dssp             HHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhh
Confidence            9999999999984

>2q0v_A Ubiquitin-conjugating enzyme E2, putative; malaria, structural G structural genomics consortium, SGC, ligase; 2.40A {Plasmodium falciparum} PDB: 3e95_C

Probab=100.00  E-value=1.1e-43  Score=255.42  Aligned_cols=133  Identities=25%  Similarity=0.434  Sum_probs=120.5

Q ss_pred             hHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            5 GIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      ..+.+||++|+++++++ ++.|+++.+... ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus        20 ~~~~~RL~kEl~~l~~~~~~~~i~~~~~~~-~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~t~i~   98 (156)
T 2q0v_A           20 VPRSFRLLDELERGQKGNVSEGVSFGLESA-DDITLSNWSCTIFGQPGTVFENRIYSLTIFCDDNYPDSPPTVKFDTKIE   98 (156)
T ss_dssp             CCHHHHHHHHHHHHHCC-CCTTEEEEESST-TCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCCeEEEECCC-ccccceeeEEEEECCCCCCcCCcEEEEEEECCCcCCCCCCeEEEEcccc
Confidence            45889999999999998 788999887542 2247999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCce---eecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhC
Q 031408           84 HPNVYPSGTV---CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQD  141 (160)
Q Consensus        84 Hpnv~~~G~i---cl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~  141 (160)
                      ||||+.+|+|   |+++|.   +|+|+++|.+||.+|+++|.+|++++|+|.+|+.+|.+|
T Consensus        99 HPNV~~~G~icisCL~iL~---~WsP~~ti~~vL~sI~~ll~~Pn~~~p~n~~aa~~y~~n  156 (156)
T 2q0v_A           99 MSCVDNCGRVIKNNLHILK---NWNRNYTIETILISLRQEMLSSANKRLPQPNEGEVYSNN  156 (156)
T ss_dssp             CTTBCTTSBBCGGGSHHHH---TCCTTCCHHHHHHHHHHHTTSTTTTTCCCCCTTCBC---
T ss_pred             cCCCccCCeEehhhccccc---CCCCcCcHHHHHHHHHHHHhCCCCCCcCChHHHHHhhhC
Confidence            9999999999   888885   499999999999999999999999999999999988765

>2fo3_A Ubiquitin-conjugating enzyme; SGC, UBC, structural genomics, structural genomics consortium, unknown function; 1.86A {Plasmodium vivax} SCOP: d.20.1.1

Probab=100.00  E-value=4.3e-42  Score=239.23  Aligned_cols=117  Identities=26%  Similarity=0.515  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-cc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FH   84 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~H   84 (160)
                      .|.+||++|+++++++++.|+++.+..    +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ ||
T Consensus         6 ~a~~RL~kEl~~l~~~~~~~~~~~~~~----~~l~~w~~~i~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~H   81 (125)
T 2fo3_A            6 NANYRIQKELHNFLNNPPINCTLDVHP----NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKH   81 (125)
T ss_dssp             ---CHHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCB
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCc----chhhhhheEEeCCCCCCcCCCEEEEEEEcCCCCCCCCCEEEEeCCCCCC
Confidence            478999999999999999999998865    7999999999999999999999999999999999999999999996 99


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD  128 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~  128 (160)
                      |||+.+|+||+++|.+  +|+|++++.+||.+|+++|.+|+...
T Consensus        82 Pnv~~~G~iCl~iL~~--~W~P~~~i~~vl~si~~ll~~p~~~~  123 (125)
T 2fo3_A           82 THVYSNGDICLSLLGD--DYNPSLSISGLVLSIISMLSSAKEKK  123 (125)
T ss_dssp             TTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHC------
T ss_pred             CcCCCCCEEEchhcCC--CCCCCCcHHHHHHHHHHHHhCccccc
Confidence            9999999999999987  89999999999999999999988653

>1jat_B Ubiquitin-conjugating enzyme variant MMS2; UEV, ligase; 1.60A {Saccharomyces cerevisiae} SCOP: d.20.1.1 PDB: 2gmi_B

Probab=100.00  E-value=2.4e-43  Score=249.49  Aligned_cols=133  Identities=24%  Similarity=0.393  Sum_probs=116.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHc-CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408            1 MSGGGIARGRLTEERKAWRKN-HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~-~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      ||. ..+.+||++|+++++++ ++.|+++.+... ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.
T Consensus         2 m~~-~~~~~RL~kEl~~l~~~~~~~~~~~~~~~~-~d~nl~~w~~~i~GP~~tpyegg~f~~~i~fp~~YP~~PP~v~f~   79 (138)
T 1jat_B            2 MSK-VPRNFRLLEELEKGEKGFGPESCSYGLADS-DDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFI   79 (138)
T ss_dssp             -CC-CCHHHHHHHHHHHHHC----CCEEEEESST-TCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEES
T ss_pred             cch-HHHHHHHHHHHHHHHhcCCCCCEEEEeCCC-CCCcceEEEEEEECCCCCCccceEEEEEEECCCCCCCCCCceEEE
Confidence            663 46789999999999998 788999888542 224699999999999999999999999999999999999999999


Q ss_pred             cCcccccccCC-Cce--eecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHH
Q 031408           80 QGFFHPNVYPS-GTV--CLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLF  138 (160)
Q Consensus        80 t~i~Hpnv~~~-G~i--cl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~  138 (160)
                      |++|||||+.+ |+|  |+++|.   +|+|++++.+||.+|+++|.+|++++|+|.+|+.+|
T Consensus        80 t~i~HPnv~~~~G~i~~cL~~l~---~W~p~~~i~~vl~~i~~ll~~pn~~~p~~~~~~~~y  138 (138)
T 1jat_B           80 SKINLPCVNPTTGEVQTDFHTLR---DWKRAYTMETLLLDLRKEMATPANKKLRQPKEGETF  138 (138)
T ss_dssp             BCCCCTTBCTTTCBBCTTSHHHH---TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTTCBC
T ss_pred             cccccCCEeCCCCEEeeecccCC---CCCCcCcHHHHHHHHHHHHcCCCCCCCCCcchhhcC
Confidence            99999999985 999  898875   599999999999999999999999999999987643

>2a4d_A Ubiquitin-conjugating enzyme E2 variant 1; alternative splicing, nuclear protein, UBL conjugation pathway,ubiquitin, ligase, structural genomics; 1.69A {Homo sapiens} SCOP: d.20.1.1 PDB: 2c2v_C 1j7d_A 1j74_A 1zgu_A

Probab=100.00  E-value=8.6e-42  Score=246.22  Aligned_cols=128  Identities=23%  Similarity=0.343  Sum_probs=115.9

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      ..+.+||++|+++|+++++.| +.+.+..+ ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus        24 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~-~d~~l~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  102 (160)
T 2a4d_A           24 VPRNFRLLEELEEGQKGVGDGTVSWGLEDD-EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  102 (160)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESST-TCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCC
T ss_pred             chHHHHHHHHHHHHHhCCCCCcEEEEecCC-ccccceeeEEEEECCCCCCccCeEEEEEEECCCcCCCCCcEEEEecCce
Confidence            468899999999999998888 66665331 1125999999999999999999999999999999999999999999999


Q ss_pred             ccccc-CCCceeecCCC--CCCCCCCcCCHHHHHHHHHHhh-cCCCCCCccCHHHH
Q 031408           84 HPNVY-PSGTVCLSILN--EDNGWRPAITVKQILVGIQDLL-DQPNPADPAQTDGY  135 (160)
Q Consensus        84 Hpnv~-~~G~icl~~l~--~~~~W~p~~~i~~vl~~i~~ll-~~p~~~~p~n~~a~  135 (160)
                      ||||+ .+|+||+++|.  +  +|+|+++|++||.+|+++| .+|++++|+|.|||
T Consensus       103 HPNV~~~~G~ICl~iL~~~~--~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  156 (160)
T 2a4d_A          103 MNGVNSSNGVVDPRAISVLA--KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  156 (160)
T ss_dssp             CTTBCTTTCBBCGGGSHHHH--TCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTTC
T ss_pred             eCCEECCCCEEehhhcCCcc--CCCccCcHHHHHHHHHHHHccCCCCCCCCChhhc
Confidence            99999 69999999997  5  8999999999999999999 57999999999987

>2h2y_A Ubiquitin-conjugating enzyme; structural genomics, unknown function, structural genomics consortium, SGC; 2.80A {Plasmodium falciparum 3D7}

Probab=100.00  E-value=3.1e-41  Score=237.96  Aligned_cols=116  Identities=27%  Similarity=0.544  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-c
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-F   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~   83 (160)
                      +.+.+||++|+++++++++.|+++.+..    +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++ |
T Consensus        19 ~~~~~RL~kEl~~l~~~~~~~~~~~~~~----~nl~~W~~~I~GP~~tpYegg~f~~~i~fp~~YP~~PP~v~f~t~i~~   94 (136)
T 2h2y_A           19 GNANYRIQKELNNFLKNPPINCTIDVHP----SNIRIWIVQYVGLENTIYANEVYKIKIIFPDNYPLKPPIVYFLQKPPK   94 (136)
T ss_dssp             TSHHHHHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCC
T ss_pred             hHHHHHHHHHHHHHHhCCCCCeEEEecc----ccccccEEEEECCCCCceeCCEEEEEEEeCCCCCCCCCEEEEeCCCCC
Confidence            4588999999999999999999998865    7999999999999999999999999999999999999999999996 9


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCC
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP  126 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~  126 (160)
                      ||||+.+|+||+++|.+  +|+|++++.+||.+|+++|.+|+.
T Consensus        95 HPnv~~~G~ICl~iL~~--~WsP~~ti~~vL~si~sll~~p~~  135 (136)
T 2h2y_A           95 HTHVYSNGDICLSVLGD--DYNPSLSISGLILSIISMLSSAKE  135 (136)
T ss_dssp             CTTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHSSSCC
T ss_pred             CCcCCCCCEEECccccC--CCCCCCcHHHHHHHHHHHHhCcCc
Confidence            99999999999999987  899999999999999999998874

>2hlw_A Ubiquitin-conjugating enzyme E2 variant 1; ubiquitin-conjugating enzyme variant, UBC13, HUBC13, polyubiquitination, ligase, signaling protein; NMR {Homo sapiens}

Probab=100.00  E-value=3e-41  Score=245.79  Aligned_cols=128  Identities=23%  Similarity=0.334  Sum_probs=115.3

Q ss_pred             hHHHHHHHHHHHHHHHcCCCC-eEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            5 GIARGRLTEERKAWRKNHPHG-FVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~-~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      ..+.+||++|+++|+++++.| +.+.+..+ ++.|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|
T Consensus        34 ~p~~~RL~kEl~~l~~~~~~g~~~~~~~~~-~d~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~  112 (170)
T 2hlw_A           34 VPRNFRLLEELEEGQKGVGDGTVSWGLEDD-EDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKIN  112 (170)
T ss_dssp             CCHHHHHHHHHHHHHHCCGGGCEEEEESST-TCSSCCBEEEEECCCSSSTTSSCCBCEEEECCSSCTTSCCEEEECBCCC
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcEEEEecCc-ccccceeeEEEEeCCCCCCcCCcEEEEEEECCCCCCCCCCeeEEecccc
Confidence            358999999999999998888 56655331 1125999999999999999999999999999999999999999999999


Q ss_pred             ccccc-CCCceeecCCC--CCCCCCCcCCHHHHHHHHHHhhc-CCCCCCccCHHHH
Q 031408           84 HPNVY-PSGTVCLSILN--EDNGWRPAITVKQILVGIQDLLD-QPNPADPAQTDGY  135 (160)
Q Consensus        84 Hpnv~-~~G~icl~~l~--~~~~W~p~~~i~~vl~~i~~ll~-~p~~~~p~n~~a~  135 (160)
                      ||||+ .+|+||+++|.  .  +|+|+++|.+||.+|+++|. .|++++|+|.|||
T Consensus       113 HPNV~~~~G~ICl~iL~~~~--~WsP~~ti~~vL~sI~~ll~~~pn~~~P~n~eaa  166 (170)
T 2hlw_A          113 MNGVNSSNGVVDPRAISVLA--KWQNSYSIKVVLQELRRLMMSKENMKLPQPPEGQ  166 (170)
T ss_dssp             CSSBCSSSCBBCTTTCHHHH--TCCSSCCHHHHHHHHHHHHHSTTTSSSCCCSSCC
T ss_pred             cCCEeCCCCEEEhhhcCCCC--CCCccCcHHHHHHHHHHHHccCCCCCCCCCcccc
Confidence            99999 79999999997  5  89999999999999999996 5999999999986

>2a7l_A Hypothetical ubiquitin-conjugating enzyme LOC55284; structural genomics consortium, (SGC), ligase; 1.82A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=1.8e-40  Score=233.78  Aligned_cols=109  Identities=34%  Similarity=0.660  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEe--ecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc--
Q 031408            8 RGRLTEERKAWRKNHPHGFVAK--PETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF--   83 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~--~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~--   83 (160)
                      .+||++|+++++++++.|+++.  +.+    +|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|++|  
T Consensus        24 ~~RL~kEl~~l~~~~~~gi~v~~~~~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fp~~YP~~PP~v~F~T~i~~~   99 (136)
T 2a7l_A           24 QKRLQKELLALQNDPPPGMTLNEKSVQ----NSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTGENIPV   99 (136)
T ss_dssp             CHHHHHHHHHHHHSCCTTCCCCTTCCC----CSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEESSCCCC
T ss_pred             HHHHHHHHHHHHhCCCCCEEEEEeeCc----cccceeEEEEECCCCCccccEEEEEEEECCCCCCCCCCEEEEeCCCcCC
Confidence            4999999999999999999864  444    79999999999999999999999999999999999999999999999  


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~  122 (160)
                      ||||+.+|+||+++|.+  +|+|+++|++||.+|+++|.
T Consensus       100 HPNV~~~G~ICL~iL~~--~WsP~~ti~~vL~sI~slL~  136 (136)
T 2a7l_A          100 HPHVYSNGHICLSILTE--DWSPALSVQSVCLSIISMLS  136 (136)
T ss_dssp             BTTBCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHTC
T ss_pred             CccCCCCCeEEchhcCC--CCCCCCcHHHHHHHHHHHhC
Confidence            99999999999999987  89999999999999999973

>2f4w_A Ubiquitin-conjugating enzyme E2, J2; endoplasmic reticulum, ligase, UBL conjugation pathway, structural genomics consortium (SGC); 2.00A {Homo sapiens} SCOP: d.20.1.1

Probab=100.00  E-value=3.8e-38  Score=232.80  Aligned_cols=118  Identities=27%  Similarity=0.501  Sum_probs=103.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.+||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|+  |
T Consensus        13 ~~a~~RL~kEl~~l~~~~~~~i~~~p~~----~nl~~W~~~I~GP~~TpYegG~f~l~i~fP~~YP~~PP~v~f~T~--~   86 (187)
T 2f4w_A           13 TTATQRLKQDYLRIKKDPVPYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITP--N   86 (187)
T ss_dssp             -CHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSC--C
T ss_pred             cHHHHHHHHHHHHHHhCCCCCEEEEEcC----CccceeEEEEeCCCCCCCCCCEEEEEEEcCCCCCCCCCcccccCC--C
Confidence            3588999999999999999999998876    799999999999999999999999999999999999999999999  9


Q ss_pred             ccccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhhcCCCCCC
Q 031408           85 PNVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNPAD  128 (160)
Q Consensus        85 pnv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~  128 (160)
                      |+|+.+|+||+++|.. .++|+|+++|.+||.+|+++|.+|+++.
T Consensus        87 ~~~~~~G~ICL~iL~~~~~~W~P~~ti~~vL~si~sll~~p~p~~  131 (187)
T 2f4w_A           87 GRFKCNTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTL  131 (187)
T ss_dssp             SSBCTTSCBC----------CCTTCCHHHHHHHHHHHHHSCCCCT
T ss_pred             ceeccCCeEeeeccccCccCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence            9999999999999942 1289999999999999999999988864

>1zuo_A Hypothetical protein LOC92912; ligase, ubiquitin-conjugating enzyme, structural genomics consortium ,SGC; 1.80A {Homo sapiens} SCOP: d.20.1.1 PDB: 2qgx_A

Probab=100.00  E-value=4.4e-40  Score=242.90  Aligned_cols=140  Identities=18%  Similarity=0.339  Sum_probs=122.5

Q ss_pred             chHHHHHHHHHHHHHHHcC---CCCeEEeecCCCCCCCcceEEEEEcCC-CCCCCCC-----------CEEEEEEEeCCC
Q 031408            4 GGIARGRLTEERKAWRKNH---PHGFVAKPETKDGSVNLMIWECIIPGK-TGTDWEG-----------GYFPLTLYFSED   68 (160)
Q Consensus         4 ~~~~~~Rl~~E~~~l~~~~---~~~~~~~~~~~~~~~~~~~w~~~i~Gp-~~tpy~g-----------g~f~~~i~fp~~   68 (160)
                      +..+.+||++|+++|++++   +.++++.+..    +|+++|+++|.|| ++|||+|           |.|++.|.||++
T Consensus        25 s~~a~~RL~kEl~~l~~~~~~~~~~~~~~p~~----dnl~~W~~~I~Gp~~~tpy~ggl~~~~~~~g~g~f~l~i~fp~~  100 (186)
T 1zuo_A           25 SVQASDRLMKELRDIYRSQSYKTGIYSVELIN----DSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKDN  100 (186)
T ss_dssp             CHHHHHHHHHHHHHHHTSHHHHTTSEEEEEET----TEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCTT
T ss_pred             cHHHHHHHHHHHHHHHhCCCCCCCcEEEEEcC----CccceeEEEEECCCCCCCccccchhhccccCceEEEEEEECCCC
Confidence            3789999999999999987   6889998876    7999999999997 9999998           899999999999


Q ss_pred             CCCCCCeeeeccCcccc-cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHH
Q 031408           69 YPSKPPKCKFPQGFFHP-NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKR  147 (160)
Q Consensus        69 YP~~pP~v~f~t~i~Hp-nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~  147 (160)
                      ||++||+|+|.+++||| ||+.+|+||+++|..+ +|+|+++|.+||.+|+++|.+|+...        .+..++.+|.+
T Consensus       101 YP~~PP~V~f~tpi~hPnnV~~~G~ICL~iL~~~-~WsP~~ti~~VL~sI~slL~~p~a~~--------~~~~~~~~Y~~  171 (186)
T 1zuo_A          101 FPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSAYSIESVIMQINATLVKGKARV--------QFGANKNQYNL  171 (186)
T ss_dssp             TTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT-TCCTTSCHHHHHHHHHHHHHHTTCEE--------CTTCCTTCCCH
T ss_pred             CCCCCCeEEEeCCccCCCccCCCCcEEeccCCCC-CCCCcCcHHHHHHHHHHHHcCCChhH--------hhccCHHHHhH
Confidence            99999999999999999 6999999999999742 89999999999999999998886533        34445667777


Q ss_pred             HHHHHHHhc
Q 031408          148 RVRQQAKQY  156 (160)
Q Consensus       148 ~~r~~~~~~  156 (160)
                      ++++++.+.
T Consensus       172 ~~~~~~~~~  180 (186)
T 1zuo_A          172 ARAQQSYNS  180 (186)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            777666553

>2z6o_A UFM1-conjugating enzyme 1; UFC1, ubiquitin, UBL, polymorphism, UBL conjugation pathway, ligase; 1.60A {Homo sapiens} PDB: 2z6p_A 1ywz_A 2in1_A 2k07_A 3e2g_A 3evx_A

Probab=99.95  E-value=2.9e-29  Score=178.83  Aligned_cols=98  Identities=20%  Similarity=0.340  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCeee
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKCK   77 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v~   77 (160)
                      .+||++|++.|++.      +.+..    +|++.|.+.+.||+||+|+||          .|+++|.||++||.+||+|+
T Consensus        34 ~~RL~eE~k~L~k~------v~p~k----~n~~~W~~ii~Gp~gT~WeGgcw~~~~~~~y~F~L~~~fPe~YP~~PPeV~  103 (172)
T 2z6o_A           34 VQRLKEEYQSLIRY------VENNK----NADNDWFRLESNKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEIA  103 (172)
T ss_dssp             HHHHHHHHHHHHHH------HHHHH----HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCCB
T ss_pred             HHHHHHHHHHHHHH------hccCc----cccceeEEeecCCCCCcccCcccccccccceEEEEEEECCCCCCCCCCeee
Confidence            89999999999883      44444    688999999999999999999          99999999999999999999


Q ss_pred             eccC-cccccccCCCceeecCCCCC--CCCCCcCCHHHHHH
Q 031408           78 FPQG-FFHPNVYPSGTVCLSILNED--NGWRPAITVKQILV  115 (160)
Q Consensus        78 f~t~-i~Hpnv~~~G~icl~~l~~~--~~W~p~~~i~~vl~  115 (160)
                      |.+. +||||||.+|+||+++|..+  ..|+|+++|.++|.
T Consensus       104 F~~~~~~hpnmY~~G~ICLdIL~kp~Ws~~~P~~~IahiL~  144 (172)
T 2z6o_A          104 VPELDGKTAKMYRGGKICLTDHFKPLWARNVPKFGLAHLMA  144 (172)
T ss_dssp             CGGGTTTCSSBCTTSBBCCCTTHHHHHHHHTTSCCHHHHHH
T ss_pred             eCCCCCCCCCCCCCCcEechhhccccccccCCccCHHHHHh
Confidence            9997 99999999999999999542  14559999999984

>3r3q_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomal sorting, ESCRT-I; 1.45A {Saccharomyces cerevisiae} SCOP: d.20.1.2 PDB: 3r42_A 1uzx_A*

Probab=99.82  E-value=4.4e-20  Score=132.57  Aligned_cols=113  Identities=19%  Similarity=0.277  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHHcCC-C--CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeeecc--
Q 031408            9 GRLTEERKAWRKNHP-H--GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQ--   80 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~-~--~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t--   80 (160)
                      +|..+|+.++.+.-+ .  ...+....    +....+.+.+.|.-.++|+|++   |.+.|.||++||++||.|.|.+  
T Consensus        31 ~~~~~dv~~~l~~yp~L~p~t~~yt~~----dG~~~~Ll~l~Gtipv~y~g~~~Yn~pi~IwlP~~YP~~PP~v~v~p~t  106 (162)
T 3r3q_A           31 RTTFHDSLALLDNFHSLRPRTRVFTHS----DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLEN  106 (162)
T ss_dssp             HHHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEEECSCCTTSCCEEEEEEECCTTTTTSCCEEEECGGG
T ss_pred             hHHHHHHHHHHHhCCCCceeeeeEEcC----CCChheEEEEECccCccccCcccccccEEEEeCcccCCCCCEEEEECCC
Confidence            677788877766432 1  12122222    4445556666665668999998   8899999999999999998865  


Q ss_pred             -----C---cc-cccccCCCceeecCCCCCCCCCC-cCCHHHHHHHHHHhhcCCCCCC
Q 031408           81 -----G---FF-HPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLDQPNPAD  128 (160)
Q Consensus        81 -----~---i~-Hpnv~~~G~icl~~l~~~~~W~p-~~~i~~vl~~i~~ll~~p~~~~  128 (160)
                           +   ++ |||||.+|+||+++|.   +|++ +.++.++|.+|.++|.+|+++.
T Consensus       107 ~~m~~~~~~I~~hpnVD~~G~I~lpyL~---~W~p~~s~L~~ll~~l~~lf~ep~~d~  161 (162)
T 3r3q_A          107 FDMNTISSSLPIQEYIDSNGWIALPILH---AWDPAAMNLIMVVQELMSLLHEPPQDQ  161 (162)
T ss_dssp             CCTTTSCTTSTHHHHBCTTSBBCCGGGG---SCCGGGCCHHHHHHHHHHTTSCCCCCC
T ss_pred             ccccccccccCCCCCCCCCCcEeCcccc---cCCCCcCcHHHHHHHHHHHhcCCCCCC
Confidence                 1   77 9999999999999994   5999 5799999999999999999875

>3kpa_A Probable ubiquitin fold modifier conjugating ENZY; UBL conjugation pathway, ligase, structural genomics, PSI; 2.20A {Leishmania major} SCOP: d.20.1.4

Probab=99.72  E-value=1.2e-18  Score=121.67  Aligned_cols=82  Identities=23%  Similarity=0.432  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCC----------EEEEEEEeCCCCCCCCCee
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGG----------YFPLTLYFSEDYPSKPPKC   76 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg----------~f~~~i~fp~~YP~~pP~v   76 (160)
                      =..||+.||..|-+.      +. ...   .+-..|...+.||+||+|.|+          .|++.|.||.+||.+||+|
T Consensus        35 w~~RlkeEy~alI~y------v~-~nK---~~d~dWf~~~sn~~GT~W~G~cw~~~~~~kyeFkLefdiP~tYP~tPPeI  104 (168)
T 3kpa_A           35 WTARLKEEYASLITY------VE-HNK---ASDSHWFHLESNPQGTRWYGTCWTYYKNEKYEFEMNFDIPVTYPQAPPEI  104 (168)
T ss_dssp             HHHHHHHHHHHHHHH------HH-HHH---HTTCCCEEEEECTTSCEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHHHH------HH-hcc---cccCCeeeecCCCCCCcccCccceeeccceeEEEEEEeCCccCCCCCCEe
Confidence            368999999998432      11 111   233568888899999999999          8999999999999999999


Q ss_pred             eeccC-cccccccCCCceeecCC
Q 031408           77 KFPQG-FFHPNVYPSGTVCLSIL   98 (160)
Q Consensus        77 ~f~t~-i~Hpnv~~~G~icl~~l   98 (160)
                      +|.+. .+||++|.+|+||++++
T Consensus       105 ~Fp~ldgkt~kmYr~GkICLdIh  127 (168)
T 3kpa_A          105 ALPELEGKTVKMYRGGKICMTTH  127 (168)
T ss_dssp             BCGGGTTTCSSEETTTEECCCTT
T ss_pred             ecccccCcCccccCCCcEEeccc
Confidence            99994 89999999999999985

>3obq_A Tumor susceptibility gene 101 protein; protein transprot, ubiquitin binding, protein transport; 1.40A {Homo sapiens} SCOP: d.20.1.2 PDB: 3obs_A 3obu_A 3obx_A 3p9g_A* 3p9h_A* 2f0r_A 1kpp_A 1kpq_A 1m4p_A 1m4q_A 1s1q_A

Probab=99.60  E-value=6.7e-15  Score=103.90  Aligned_cols=102  Identities=22%  Similarity=0.359  Sum_probs=78.8

Q ss_pred             HHHHHHHHHcCCC-CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeeeccC------c
Q 031408           12 TEERKAWRKNHPH-GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG------F   82 (160)
Q Consensus        12 ~~E~~~l~~~~~~-~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~------i   82 (160)
                      .+|+..+.+.-+. ........ ....++..|.++|.    .+|+|++|.+  .|.||++||++||.| |.++      .
T Consensus        26 ~~dv~~vl~~yp~L~p~~~~y~-G~~~~LL~l~GtIp----v~y~g~~y~iPi~Iwlp~~YP~~pP~v-fv~pt~~m~I~   99 (146)
T 3obq_A           26 VRETVNVITLYKDLKPVLDSYG-TGSRELMNLTGTIP----VPYRGNTYNIPICLWLLDTYPYNPPIC-FVKPTSSMTIK   99 (146)
T ss_dssp             HHHHHHHHHHCTTEEEEEEESS-STTCEEEEEEEEEE----EECSSCEEEEEEEEECCTTTTTSCCEE-EECCCTTEEEC
T ss_pred             HHHHHHHHHhCCCCceEeeeee-CChheEEEEEEEee----eeecCccccceEEEEeCccCCCCCCEE-EEeCCCCCEEC
Confidence            4566666554321 12221111 33478999999997    5799999995  899999999999999 5544      4


Q ss_pred             ccccccCCCceeecCCCCCCCCCC-cCCHHHHHHHHHHhhc
Q 031408           83 FHPNVYPSGTVCLSILNEDNGWRP-AITVKQILVGIQDLLD  122 (160)
Q Consensus        83 ~Hpnv~~~G~icl~~l~~~~~W~p-~~~i~~vl~~i~~ll~  122 (160)
                      .|||||.+|+||++.|..   |++ ..++.+++..++++|.
T Consensus       100 ~~~~Vd~~G~i~lpyL~~---W~~~~snL~~ll~~l~~~F~  137 (146)
T 3obq_A          100 TGKHVDANGKIYLPYLHE---WKHPQSDLLGLIQVMIVVFG  137 (146)
T ss_dssp             CBTTBCTTCBBCCHHHHT---CCTTTCCHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCEecccccc---cCCCCCCHHHHHHHHHHHHh
Confidence            899999999999999954   988 7899999999999994

>2ebm_A RWD domain-containing protein 1; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.35  E-value=0.0025  Score=43.16  Aligned_cols=68  Identities=19%  Similarity=0.239  Sum_probs=45.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ...+...|+..|..--+..+...  .    .....+.+.+....+..-+.-.+.+.|.||++||.+||.+.+..
T Consensus        11 ~~e~q~~EleaL~sIy~d~~~~~--~----~~~~~~~i~i~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~~   78 (128)
T 2ebm_A           11 YGEEQRNELEALESIYPDSFTVL--S----ENPPSFTITVTSEAGENDETVQTTLKFTYSEKYPDEAPLYEIFS   78 (128)
T ss_dssp             HHHHHHHHHHHHHHHCSSSEEEC--C----SSSCEEEECCBCCCCTTSCCCBEEEEEECCSSTTTSCCEEEEEE
T ss_pred             hHHHHHHHHHHHHHHccCceEEc--c----CCCCEEEEEEecCCCCCcCceeEEEEEEeCCCCCCCCceEEEEc
Confidence            45677889999977655555432  1    22356666665322222234478899999999999999998644

>2day_A Ring finger protein 25; ligase, metal-binding, UB1 conjugation, UB1 conjugation pathway, RWD domain, alpha+beta sandwich fold, structural genomics; NMR {Homo sapiens} SCOP: d.20.1.3 PDB: 2dmf_A

Probab=96.20  E-value=0.062  Score=36.10  Aligned_cols=70  Identities=16%  Similarity=0.119  Sum_probs=43.5

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCC--CCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDW--EGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy--~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      .+...|+..|..--+..+......  .......+.+.+..+.+..-  ..-.+.+.|.+|++||..+|.+...+
T Consensus        11 e~~~~EleaL~SIY~de~~~~~~~--~~~~~~~~~i~l~~~~~~~~~~~~~~~~L~~~~p~~YP~~~P~i~~~~   82 (128)
T 2day_A           11 WVLPSEVEVLESIYLDELQVIKGN--GRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRN   82 (128)
T ss_dssp             CHHHHHHHHHHHHSTTTEEEECCT--TSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEE
T ss_pred             HHHHHHHHHHHHHCCCceEEecCC--CCCCCeEEEEEEecCCCCCccccceeEEEEEEcCCCCCCCCCCeEEEc
Confidence            467889998877655555543211  00123455566653222111  12478899999999999999998765

>3zqs_A E3 ubiquitin-protein ligase fancl; HET: P6G; 2.00A {Homo sapiens}

Probab=95.95  E-value=0.053  Score=39.25  Aligned_cols=83  Identities=18%  Similarity=0.244  Sum_probs=58.8

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   88 (160)
                      ++|.+|+.++      |+.-.... |  .++...++.+...     .|..+.++|.++.+||.++|.+...-+.  |.  
T Consensus         4 ~~li~Ei~~i------GW~~l~~i-d--~~~~~i~l~~~D~-----~gR~H~l~v~l~~~yp~~~P~~~~DlP~--~~--   65 (186)
T 3zqs_A            4 SSLIEEIGTL------GWDKLVYA-D--TCFSTIKLKAEDA-----SGREHLITLKLKAKYPAESPDYFVDFPV--PF--   65 (186)
T ss_dssp             CSHHHHHHHH------CGGGEEEE-C--TTSSEEEEEEECT-----TSCEEEEEEECCTTTTTSCCEEECCCSS--CC--
T ss_pred             HHHHHHHHHh------CCceeeee-c--CCccEEEEEEEeC-----CCCeEEEEEEECCCCCCCCCeeEEcCCC--Cc--
Confidence            3678888888      32211111 1  6788888888732     3689999999999999999988665442  11  


Q ss_pred             CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhh
Q 031408           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLL  121 (160)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll  121 (160)
                                ..  .|++..++.+++...+..+
T Consensus        66 ----------~~--~w~~~ssL~~v~~qF~~~L   86 (186)
T 3zqs_A           66 ----------CA--SWTPQSSLISIYSQFLAAI   86 (186)
T ss_dssp             ----------CC--CCCTTCCHHHHHHHHHHHH
T ss_pred             ----------cc--ccCCCccHHHHHHHHHHHH
Confidence                      12  6999999999988777665

>2yz0_A Serine/threonine-protein kinase GCN2; A-B-B-B-B-A-A, amino acid starvation signal response, EIF2alpha kinase, transferase; NMR {Saccharomyces cerevisiae}

Probab=95.68  E-value=0.073  Score=36.25  Aligned_cols=72  Identities=17%  Similarity=0.185  Sum_probs=41.6

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCC--CCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKD--GSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~--~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ..+-..|+..|..--+..+........  .......+.+.+.+..+ .-..-.+.+.|.+|++||..||.|.+.+
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~f~I~l~~~~~-~~~~~~~~L~~~~p~~YP~~~P~i~l~~   85 (138)
T 2yz0_A           12 YEIQCNELEAIRSIYMDDFTDLTKRKSSWDKQPQIIFEITLRSVDK-EPVESSITLHFAMTPMYPYTAPEIEFKN   85 (138)
T ss_dssp             HHHHHHHHHHHHTTSSSSEECCSTTSSSSCSSCCSCEEEEEECSSC-SSCCCEEEEEEECCSSTTSSCCEEEEEC
T ss_pred             HHHHHHHHHHHHHHChhhheecccccccccCCCCcEEEEEEecCCC-CCCceEEEEEEECCCCCCCCCCeEEEec
Confidence            345567888886644444332110000  00123556777763222 1123478899999999999999998754

>2ebk_A RWD domain-containing protein 3; alpha+beta sandwich fold, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.18  E-value=0.051  Score=36.59  Aligned_cols=67  Identities=12%  Similarity=0.081  Sum_probs=39.8

Q ss_pred             HHHHHHHHHHHHcCCC--CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408            9 GRLTEERKAWRKNHPH--GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~--~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      .+...|+..|..--+.  .+......   ..+...+.+.+... +..-..-.+.+.|.+|++||..||.+...
T Consensus        10 e~q~~EleaL~SIy~d~~e~~~~~~~---~~~~~~f~i~l~~~-~~~~~~~~~~L~~~~p~~YP~~~P~i~l~   78 (128)
T 2ebk_A           10 EPVQEELSVLAAIFCRPHEWEVLSRS---ETDGTVFRIHTKAE-GFMDADIPLELVFHLPVNYPSCLPGISIN   78 (128)
T ss_dssp             HHHHHHHHHHHHHHCCTTTCCCSEEC---SSSCEEEEEEEECC-TTTTCCCEEEEEEEECSSTTSSCCCCCCC
T ss_pred             HHHHHHHHHHHHHcCCCCceEEecCC---CCCCCeEEEEecCC-CCCCCCeEEEEEEECCCCCCCCCCeEEEE
Confidence            4567788888664322  23221100   02235677777632 21011247899999999999999998764

>2daw_A RWD domain containing protein 2; alpha+beta sandwich fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=94.71  E-value=0.27  Score=34.25  Aligned_cols=23  Identities=13%  Similarity=0.077  Sum_probs=20.8

Q ss_pred             EEEEEEEeCCCCCCCCCeeeecc
Q 031408           58 YFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus        58 ~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      .+.+.|.+|.+||..+|.|....
T Consensus        76 ~i~L~v~lP~~YP~~~P~i~l~~   98 (154)
T 2daw_A           76 KIDLQVTMPHSYPYLALQLFGRS   98 (154)
T ss_dssp             EEEEEEEECSSTTSSCCEEEEEC
T ss_pred             eEEEEEEcCCCCCCCCCcEEEEe
Confidence            79999999999999999998654

>1ukx_A GCN2, GCN2 EIF2alpha kinase; UBC-like fold, triple beta-turns, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.20.1.3

Probab=93.93  E-value=0.63  Score=31.34  Aligned_cols=71  Identities=13%  Similarity=0.047  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCC-CCCCcceEEEEEcCCCC-C-CCCCCEEEEEEEeCCCCCCCCCeeeec
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKD-GSVNLMIWECIIPGKTG-T-DWEGGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~-~~~~~~~w~~~i~Gp~~-t-py~gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      ..+...|+..|..--+..+........ .........+.+. +.+ . .-..-.+.+.|.||++||..+|.|.+.
T Consensus        12 ~e~q~~EleaL~SIY~d~~~~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~~~~~~~L~v~~p~~YP~~~P~i~l~   85 (137)
T 1ukx_A           12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLY-PQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLK   85 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEEC-CTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEE
T ss_pred             HHHHHHHHHHHHHHCcccceeccCcccCccCCCcEEEEEEe-cCCcCCcccceEEEEEEECCCCCCCCCCcEEEe
Confidence            456778888887765555543211000 0001345566665 221 1 011246889999999999999999874

>2dax_A Protein C21ORF6; RWD domain, alpha+beta sandwich fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.20.1.3

Probab=91.64  E-value=0.5  Score=32.62  Aligned_cols=24  Identities=21%  Similarity=0.348  Sum_probs=20.8

Q ss_pred             EEEEEEEeCCCCCCCCCeeeeccC
Q 031408           58 YFPLTLYFSEDYPSKPPKCKFPQG   81 (160)
Q Consensus        58 ~f~~~i~fp~~YP~~pP~v~f~t~   81 (160)
                      .+.+.|.+|.+||..||.+.....
T Consensus        74 ~l~L~v~lP~~YP~~~P~i~l~~~   97 (152)
T 2dax_A           74 MFSLACILPFKYPAVLPEITVRSV   97 (152)
T ss_dssp             EEEEEEEECSSTTSSCCCCEEECT
T ss_pred             eEEEEEECCCCCCCCCCeEEEEcc
Confidence            688999999999999999987543

>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A

Probab=82.28  E-value=0.26  Score=32.43  Aligned_cols=36  Identities=3%  Similarity=-0.080  Sum_probs=0.0

Q ss_pred             CCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408          123 QPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus       123 ~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      -.....|.+...|++|.++++.|...||.|+.-||+
T Consensus        20 ~~~~~~PQDA~VA~qy~~~~~~f~~TAr~WT~~~a~   55 (108)
T 2cwb_A           20 GETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDAT   55 (108)
T ss_dssp             ------------------------------------
T ss_pred             CcccCCchhHHHHHHHHhchhccccccccccccCcC
Confidence            344567899999999999999999999999966653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d2uyza1	156	d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, U	3e-47
d1pzva_	161	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {N	9e-41
d1ayza_	153	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-39
d2ucza_	164	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-39
d1y6la_	148	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	5e-37
d1z2ua1	147	d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, U	1e-36
d1z3da1	149	d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, U	1e-35
d2e2ca_	156	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {C	3e-35
d1j7db_	149	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {H	5e-35
d1c4zd_	144	d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {H	2e-34
d1jata_	152	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	2e-34
d1yrva1	148	d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, U	3e-34
d1fzya_	149	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {B	5e-34
d1wzva1	150	d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, U	4e-33
d2bepa1	154	d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2	6e-33
d1i7ka_	146	d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {H	2e-32
d2f4za1	161	d.20.1.1 (A:32-192) Hypothetical protein Tgtwinsca	1e-31
d1y8xa1	157	d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme,	1e-31
d2a7la1	117	d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2	2e-30
d2a4da1	139	d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme,	2e-30
d1zdna1	151	d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, U	3e-30
d1yh2a1	154	d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, U	2e-29
d2awfa1	125	d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, U	2e-28
d1jatb_	136	d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {B	2e-28
d2z5da1	152	d.20.1.1 (A:23-174) Ubiquitin conjugating enzyme,	2e-28
d1yf9a1	158	d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme,	2e-26
d2f4wa1	157	d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme,	6e-26
d2fo3a1	109	d.20.1.1 (A:9-117) Putative ubiquitin-conjugating	2e-25
d1zuoa1	162	d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme	3e-19
d1s1qa_	141	d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG10	3e-18
d1uzxa_	152	d.20.1.2 (A:) Vacuolar protein sorting-associated	3e-16

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

 Score =  148 bits (375), Expect = 3e-47
 Identities = 99/155 (63%), Positives = 119/155 (76%), Gaps = 1/155 (0%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKP-ETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTL 63
           GIA  RL +ERKAWRK+HP GFVA P +  DG++NLM WEC IPGK GT WEGG F L +
Sbjct: 1   GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRM 60

Query: 64  YFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
            F +DYPS PPKCKF    FHPNVYPSGTV LSIL ED  WRPAIT+KQIL+GIQ+LL++
Sbjct: 61  LFKDDYPSSPPKCKFEPPLFHPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNE 120

Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP 158
           PN  DPAQ + Y ++ Q+  EY++RVR QAK++ P
Sbjct: 121 PNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP 155

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

 Score =  132 bits (333), Expect = 9e-41
 Identities = 50/158 (31%), Positives = 78/158 (49%), Gaps = 14/158 (8%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            L ++    R+    GF A     +   ++  WE ++ G   T +EGG+F   L F  DY
Sbjct: 4   LLKKQLADMRRVPVDGFSAGLVDDN---DIYKWEVLVIGPPDTLYEGGFFKAILDFPRDY 60

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQ 118
           P KPPK KF    +HPN+   G VC+SIL++              W P  TV+ IL+ + 
Sbjct: 61  PQKPPKMKFISEIWHPNIDKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVI 120

Query: 119 DLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            +L  PN   PA  D  ++  ++ AE+K++V Q  ++ 
Sbjct: 121 SMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS 158

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]} Length = 153

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

 Score =  129 bits (324), Expect = 2e-39
 Identities = 59/150 (39%), Positives = 80/150 (53%), Gaps = 6/150 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           AR RL  + K  +++ P G  A P       N+M+W  +I G   T +E G F L L F 
Sbjct: 4   ARRRLMRDFKRMKEDAPPGVSASPLPD----NVMVWNAMIIGPADTPYEDGTFRLLLEFD 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY +G +CL IL     W P   V  IL  IQ L + PNP
Sbjct: 60  EEYPNKPPHVKFLSEMFHPNVYANGEICLDILQNR--WTPTYDVASILTSIQSLFNDPNP 117

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           A PA  +   LF    ++Y +RV++  ++ 
Sbjct: 118 ASPANVEAATLFKDHKSQYVKRVKETVEKS 147

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]} Length = 164

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

 Score =  129 bits (324), Expect = 2e-39
 Identities = 53/162 (32%), Positives = 84/162 (51%), Gaps = 14/162 (8%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
            A+ RL +E +   K+ P G VA P++++   N+ IW+C+I G   T +  G F   L F
Sbjct: 3   TAQKRLLKELQQLIKDSPPGIVAGPKSEN---NIFIWDCLIQGPPDTPYADGVFNAKLEF 59

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQIL 114
            +DYP  PPK  F     HPN+YP+G VC+SIL+               W P  +V++IL
Sbjct: 60  PKDYPLSPPKLTFTPSILHPNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKIL 119

Query: 115 VGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           + +  +L +PN    A  D   L+  +  E++R+V+    + 
Sbjct: 120 LSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSILKS 161

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

 Score =  122 bits (307), Expect = 5e-37
 Identities = 52/150 (34%), Positives = 76/150 (50%), Gaps = 6/150 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +  R+ +E      + P    A P+      N+  W   I G  G+ +EGG F L + FS
Sbjct: 3   SAKRIQKELAEITLDPPPNCSAGPKGD----NIYEWRSTILGPPGSVYEGGVFFLDITFS 58

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            DYP KPPK  F    +H N+   G +CL IL ++  W PA+T+ ++L+ I  LL   NP
Sbjct: 59  PDYPFKPPKVTFRTRIYHCNINSQGVICLDILKDN--WSPALTISKVLLSICSLLTDCNP 116

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           ADP        ++ + AE+ R  RQ  K+Y
Sbjct: 117 ADPLVGSIATQYMTNRAEHDRMARQWTKRY 146

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]} Length = 147

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

 Score =  121 bits (305), Expect = 1e-36
 Identities = 48/151 (31%), Positives = 79/151 (52%), Gaps = 6/151 (3%)

Query: 6   IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYF 65
           +A  R+ +E +   ++ P    A P       +L  W+  I G   + ++GG F LT++F
Sbjct: 1   MALKRIQKELQDLGRDPPAQCSAGPVGD----DLFHWQATIMGPPESPYQGGVFFLTIHF 56

Query: 66  SEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPN 125
             DYP KPPK  F    +HPN+  +G++CL IL       PA+T+ ++L+ I  LL  PN
Sbjct: 57  PTDYPFKPPKVAFTTRIYHPNINSNGSICLDILRSQWS--PALTISKVLLSICSLLCDPN 114

Query: 126 PADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P DP   +  +++  D   Y +  R+  ++Y
Sbjct: 115 PDDPLVPEIARIYKTDRERYNQLAREWTQKY 145

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

 Score =  119 bits (298), Expect = 1e-35
 Identities = 61/149 (40%), Positives = 84/149 (56%), Gaps = 6/149 (4%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           +R RL  + K  +++ P G    P       N++ WE II G   T +E G F L+L F+
Sbjct: 4   SRRRLMRDFKKLQEDPPAGVSGAPTED----NILTWEAIIFGPQETPFEDGTFKLSLEFT 59

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           E+YP+KPP  KF    FHPNVY  G++CL IL       P   V  IL  IQ LLD+PNP
Sbjct: 60  EEYPNKPPTVKFISKMFHPNVYADGSICLDILQNRWS--PTYDVAAILTSIQSLLDEPNP 117

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQ 155
             PA +   QL+ ++  EY++RV+Q  +Q
Sbjct: 118 NSPANSLAAQLYQENRREYEKRVQQIVEQ 146

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]} Length = 156

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

 Score =  118 bits (296), Expect = 3e-35
 Identities = 50/147 (34%), Positives = 72/147 (48%), Gaps = 7/147 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +    +   G  A P+      NL  W   + G   T +E   + LTL F  DY
Sbjct: 13  RLQQELRTLLMSGDPGITAFPDGD----NLFKWVATLDGPKDTVYESLKYKLTLEFPSDY 68

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPP  KF    +HPNV  SG +CL IL E+  W  +  V+ IL+ +Q LL +PN A P
Sbjct: 69  PYKPPVVKFTTPCWHPNVDQSGNICLDILKEN--WTASYDVRTILLSLQSLLGEPNNASP 126

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
                  ++  +  EYK+ + ++ K  
Sbjct: 127 LNAQAADMW-SNQTEYKKVLHEKYKTA 152

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

 Score =  117 bits (294), Expect = 5e-35
 Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 7/152 (4%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G+ R R+ +E +        G  A+P+      N   +  +I G   + +EGG F L L+
Sbjct: 2   GLPR-RIIKETQRLLAEPVPGIKAEPDES----NARYFHVVIAGPQDSPFEGGTFKLELF 56

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP 124
             E+YP   PK +F    +HPNV   G +CL IL +   W PA+ ++ +L+ IQ LL  P
Sbjct: 57  LPEEYPMAAPKVRFMTKIYHPNVDKLGRICLDILKDK--WSPALQIRTVLLSIQALLSAP 114

Query: 125 NPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           NP DP   D  + +  + A+     R   + Y
Sbjct: 115 NPDDPLANDVAEQWKTNEAQAIETARAWTRLY 146

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]} Length = 144

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

 Score =  116 bits (290), Expect = 2e-34
 Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 5/147 (3%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E +  RK     F      +    NL+ W+ +I       ++ G F + + F  +Y
Sbjct: 3   RLMKELEEIRKCGMKNFRNIQVDEA---NLLTWQGLI-VPDNPPYDKGAFRIEINFPAEY 58

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK  F    +HPN+   G VCL +++    W+PA    Q++  +  L++ P P  P
Sbjct: 59  PFKPPKITFKTKIYHPNIDEKGQVCLPVISA-ENWKPATKTDQVIQSLIALVNDPQPEHP 117

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            + D  + + +D  ++ +   +  K+Y
Sbjct: 118 LRADLAEEYSKDRKKFCKNAEEFTKKY 144

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

 Score =  116 bits (290), Expect = 2e-34
 Identities = 47/147 (31%), Positives = 75/147 (51%), Gaps = 6/147 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +    +   G  A+P       NL  ++  I G   + +E G F L LY  +DY
Sbjct: 7   RIIKETEKLVSDPVPGITAEPHDD----NLRYFQVTIEGPEQSPYEDGIFELELYLPDDY 62

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P + PK +F    +HPN+   G +CL +L  +  W PA+ ++ +L+ IQ LL  PNP DP
Sbjct: 63  PMEAPKVRFLTKIYHPNIDRLGRICLDVLKTN--WSPALQIRTVLLSIQALLASPNPNDP 120

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              D  + +I++    K + R+  K Y
Sbjct: 121 LANDVAEDWIKNEQGAKAKAREWTKLY 147

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]} Length = 148

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

 Score =  115 bits (288), Expect = 3e-34
 Identities = 43/147 (29%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 5   GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLY 64
           G A   L  +    ++N+  G  AKP ++    ++M WE  I G   + W+G  F LT++
Sbjct: 3   GRAYLLLHRDFCDLKENNYKGITAKPVSE----DMMEWEVEIEGLQNSVWQGLVFQLTIH 58

Query: 65  FSEDYPSKPPKCKFPQGFFHPNVYPSGT-VCLSILNEDNGWRPAITVKQILVGIQDLLDQ 123
           F+ +Y   PP  KF    FHPNV P     C+  L+    W    T+  IL+ +Q +L  
Sbjct: 59  FTSEYNYAPPVVKFITIPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSN 118

Query: 124 PNPADPAQTDGYQLFIQDPAEYKRRVR 150
           P   +P   +  ++ ++D + Y+  +R
Sbjct: 119 PVLENPVNLEAARILVKDESLYRTILR 145

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]} Length = 149

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

 Score =  114 bits (287), Expect = 5e-34
 Identities = 36/147 (24%), Positives = 67/147 (45%), Gaps = 4/147 (2%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E +A + +       +  ++    ++   +    G  GT +EGG F + +    +Y
Sbjct: 5   RIMKEIQAVKDDPAAHITLEFVSES---DIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P KPPK +F    +HPN+          + ++  W P IT+K  L+ +Q LL  P P DP
Sbjct: 62  PFKPPKMQFDTKVYHPNISSVTGAICLDILKNA-WSPVITLKSALISLQALLQSPEPNDP 120

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              +  Q +++D   + +      + Y
Sbjct: 121 QDAEVAQHYLRDRESFNKTAALWTRLY 147

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]} Length = 150

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

 Score =  112 bits (282), Expect = 4e-33
 Identities = 37/150 (24%), Positives = 69/150 (46%), Gaps = 5/150 (3%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  R+ +E +  +K  P              N+++W  ++       +    F L + F 
Sbjct: 1   ASMRVVKELEDLQKKPPPYLRNLSSDDA---NVLVWHALL-LPDQPPYHLKAFNLRISFP 56

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
            +YP KPP  KF    +HPNV  +G +CL I++    W+P     Q+L  +  L+++PN 
Sbjct: 57  PEYPFKPPMIKFTTKIYHPNVDENGQICLPIIS-SENWKPCTKTCQVLEALNVLVNRPNI 115

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            +P + D   L  Q+P  +++   +   ++
Sbjct: 116 REPLRMDLADLLTQNPELFRKNAEEFTLRF 145

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  112 bits (280), Expect = 6e-33
 Identities = 46/157 (29%), Positives = 68/157 (43%), Gaps = 6/157 (3%)

Query: 1   MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFP 60
           M+   IA  R+  E K   K+                N       I G   T +EGG + 
Sbjct: 1   MAN--IAVQRIKREFKEVLKSEETSKNQIKVDLVDE-NFTELRGEIAGPPDTPYEGGRYQ 57

Query: 61  LTLYFSEDYPSKPPKCKFPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQD 119
           L +   E YP  PPK +F    +HPN+   +G +CL IL +   W  A+T++ +L+ +Q 
Sbjct: 58  LEIKIPETYPFNPPKVRFITKIWHPNISSVTGAICLDILKDQ--WAAAMTLRTVLLSLQA 115

Query: 120 LLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           LL    P DP        + Q+P  +K+  R  A  Y
Sbjct: 116 LLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY 152

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]} Length = 146

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

 Score =  111 bits (277), Expect = 2e-32
 Identities = 47/147 (31%), Positives = 68/147 (46%), Gaps = 7/147 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL +E      +   G  A PE+     NL  W   I G  GT +E   + L+L F   Y
Sbjct: 5   RLQQELMTLMMSGDKGISAFPESD----NLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGY 60

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P   P  KF    +HPNV   G + L IL E   W     V+ IL+ IQ LL +PN   P
Sbjct: 61  PYNAPTVKFLTPCYHPNVDTQGNISLDILKEK--WSALYDVRTILLSIQSLLGEPNIDSP 118

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
             T   +L+ ++P  +K+ +++   + 
Sbjct: 119 LNTHAAELW-KNPTAFKKYLQETYSKQ 144

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]} Length = 161

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

 Score =  109 bits (272), Expect = 1e-31
 Identities = 43/148 (29%), Positives = 70/148 (47%), Gaps = 7/148 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R  +   A   +  HG  A+        ++  W   I G  GT +EGG+F L +    DY
Sbjct: 18  RAHDSEPAATHSTSHGVSAQIVGG----DIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDY 73

Query: 70  PSKPPKCKFPQGFFHPN-VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPAD 128
           P  PPK KF    +HPN    +G +CL IL  +    PA+T++  L+ IQ +L  P P D
Sbjct: 74  PYNPPKMKFVTKIWHPNISSQTGAICLDILKHEWS--PALTIRTALLSIQAMLADPVPTD 131

Query: 129 PAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           P   +  ++ I++   + +  +   + +
Sbjct: 132 PQDAEVAKMMIENHPLFVQTAKLWTETF 159

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

 Score =  108 bits (272), Expect = 1e-31
 Identities = 36/150 (24%), Positives = 68/150 (45%), Gaps = 8/150 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A+ R+ ++                       +L+ ++ +I       ++ G F  +    
Sbjct: 4   AQLRIQKDINELNLPKTCDISFSDPD-----DLLNFKLVI-CPDEGFYKSGKFVFSFKVG 57

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           + YP  PPK K     +HPN+   G VCL+IL ED  W+P +T+  I+ G+Q L  +PNP
Sbjct: 58  QGYPHDPPKVKCETMVYHPNIDLEGNVCLNILRED--WKPVLTINSIIYGLQYLFLEPNP 115

Query: 127 ADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
            DP   +  ++   +   +++ V++  +  
Sbjct: 116 EDPLNKEAAEVLQNNRRLFEQNVQRSMRGG 145

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]} Length = 117

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  104 bits (261), Expect = 2e-30
 Identities = 38/117 (32%), Positives = 58/117 (49%), Gaps = 6/117 (5%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
            + RL +E  A + + P G     ++     ++  W   + G  GT +EG  F L   FS
Sbjct: 4   MQKRLQKELLALQNDPPPGMTLNEKSVQN--SITQWIVDMEGAPGTLYEGEKFQLLFKFS 61

Query: 67  EDYPSKPPKCKF--PQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
             YP   P+  F       HP+VY +G +CLSIL ED  W PA++V+ + + I  +L
Sbjct: 62  SRYPFDSPQVMFTGENIPVHPHVYSNGHICLSILTED--WSPALSVQSVCLSIISML 116

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]} Length = 139

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

 Score =  105 bits (262), Expect = 2e-30
 Identities = 31/127 (24%), Positives = 51/127 (40%), Gaps = 2/127 (1%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +  +K    G V+     D  + L  W  +I G   T +E   + L +     Y
Sbjct: 9   RLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKY 68

Query: 70  PSKPPKCKFPQGFFHPNVYPS-GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP-NPA 127
           P  PP  +F        V  S G V    ++    W+ + ++K +L  ++ L+    N  
Sbjct: 69  PEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMK 128

Query: 128 DPAQTDG 134
            P   +G
Sbjct: 129 LPQPPEG 135

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]} Length = 151

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

 Score =  105 bits (263), Expect = 3e-30
 Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 6/147 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            + +E      + P G    P  +    +L   +  I G  GT + GG F + L   +D+
Sbjct: 10  LVYKEVTTLTADPPDGIKVFPNEE----DLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDF 65

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P+ PPK  F    FHPNV  +G +C+++L  D  W   + ++ +L+ I+ LL  PNP   
Sbjct: 66  PASPPKGYFLTKIFHPNVGANGEICVNVLKRD--WTAELGIRHVLLTIKCLLIHPNPESA 123

Query: 130 AQTDGYQLFIQDPAEYKRRVRQQAKQY 156
              +  +L +++  EY  R R   + +
Sbjct: 124 LNEEAGRLLLENYEEYAARARLLTEIH 150

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]} Length = 154

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

 Score =  103 bits (256), Expect = 2e-29
 Identities = 41/149 (27%), Positives = 65/149 (43%), Gaps = 6/149 (4%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL  E        P G     +       +      I G   T +E G F L +   E Y
Sbjct: 6   RLKRELHMLATEPPPGITCWQDKD----QMDDLRAQILGGANTPYEKGVFKLEVIIPERY 61

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG--WRPAITVKQILVGIQDLLDQPNPA 127
           P +PP+ +F    +HPN+  +G +CL +L       WRP++ +  +L  IQ L+ +PNP 
Sbjct: 62  PFEPPQIRFLTPIYHPNIDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPD 121

Query: 128 DPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           DP   D    F  +   + +  RQ  +++
Sbjct: 122 DPLMADISSEFKYNKPAFLKNARQWTEKH 150

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

 Score =  100 bits (249), Expect = 2e-28
 Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 14/126 (11%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
            L  +     KN   GF A     +   +L  WE +I G   T +EGG F   L F +DY
Sbjct: 3   LLRRQLAELNKNPVEGFSAGLIDDN---DLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDY 59

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNG-----------WRPAITVKQILVGIQ 118
           P +PPK KF    +HPNV  +G VC+SIL+E              W P  TV+ I++ + 
Sbjct: 60  PLRPPKMKFITEIWHPNVDKNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVI 119

Query: 119 DLLDQP 124
            +L  P
Sbjct: 120 SMLADP 125

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]} Length = 136

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

 Score =  100 bits (249), Expect = 2e-28
 Identities = 25/122 (20%), Positives = 46/122 (37%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           RL EE +   K       +        + +  W   I G   ++ E   + L++    +Y
Sbjct: 8   RLLEELEKGEKGFGPESCSYGLADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNY 67

Query: 70  PSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADP 129
           P  PPK  F      P V P+     +  +    W+ A T++ +L+ ++  +  P     
Sbjct: 68  PDSPPKVTFISKINLPCVNPTTGEVQTDFHTLRDWKRAYTMETLLLDLRKEMATPANKKL 127

Query: 130 AQ 131
            Q
Sbjct: 128 RQ 129

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]} Length = 158

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

 Score = 96.0 bits (238), Expect = 2e-26
 Identities = 27/119 (22%), Positives = 39/119 (32%)

Query: 38  NLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSI 97
            +  +     G  GT +E G + L +    DYP K P   F     HPNV          
Sbjct: 24  TVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNVDERSGSVCLD 83

Query: 98  LNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY 156
           +                V +  LL  PNP+DP       L   D   +   +R+    +
Sbjct: 84  VINQTWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTH 142

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]} Length = 157

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

 Score = 94.5 bits (234), Expect = 6e-26
 Identities = 34/158 (21%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFS 66
           A  RL ++    +K+      A+P       N++ W  ++ G   T +EGGY+   L F 
Sbjct: 2   ATQRLKQDYLRIKKDPVPYICAEPLPS----NILEWHYVVRGPEMTPYEGGYYHGKLIFP 57

Query: 67  EDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDN-GWRPAITVKQILVGIQDLLDQPN 125
            ++P KPP               +  +CLSI +     W PA +V  IL G+   + +  
Sbjct: 58  REFPFKPPSIYMITPNGRFKC--NTRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKG 115

Query: 126 PADPAQTDGY---QLFIQDPAEYKRRVRQQAKQYPPVI 160
           P   +        +        +  + +   + +P V+
Sbjct: 116 PTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFPEVV 153

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]} Length = 109

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

 Score = 92.1 bits (228), Expect = 2e-25
 Identities = 31/113 (27%), Positives = 53/113 (46%), Gaps = 7/113 (6%)

Query: 10  RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDY 69
           R+ +E   +  N P              N+ IW     G   T +    + L + F +DY
Sbjct: 2   RIQKELHNFLNNPPINCTLDVHPN----NIRIWIVKYVGLENTIYANEVYKLKIIFPDDY 57

Query: 70  PSKPPKCKFPQ-GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLL 121
           P KPP   F Q    H +VY +G +CLS+L +D  + P++++  +++ I  +L
Sbjct: 58  PLKPPIVYFLQKPPKHTHVYSNGDICLSLLGDD--YNPSLSISGLVLSIISML 108

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 77.2 bits (189), Expect = 3e-19
 Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 18/159 (11%)

Query: 7   ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPG------------KTGTDW 54
           A  RL +E +   ++  +             +L  W   +                    
Sbjct: 5   ASDRLMKELRDIYRSQSYKTGIYSVELIND-SLYDWHVKLQKVDPDSPLHSDLQILKEKE 63

Query: 55  EGGYFPLTLYFSEDYPSKPPKCKFPQ-GFFHPNVYPSGTVCLSILNEDNGWRPAITVKQI 113
              Y  L   F +++P  PP  +          V   G +C+ +L +   W  A +++ +
Sbjct: 64  GIEYILLNFSFKDNFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQG-WSSAYSIESV 122

Query: 114 LVGIQDLLDQPNP--ADPAQTDGYQLFIQDPAEYKRRVR 150
           ++ I   L +        A  + Y L  +    Y   V+
Sbjct: 123 IMQINATLVKGKARVQFGANKNQYNLA-RAQQSYNSIVQ 160

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]} Length = 141

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.2 bits (182), Expect = 3e-18
 Identities = 17/96 (17%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 38  NLMIWECIIPGKTGTDWEGGYF--PLTLYFSEDYPSKPPKCKF-PQGF----FHPNVYPS 90
                   + G     + G  +  P+ L+  + YP  PP C   P          +V  +
Sbjct: 45  GSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSMTIKTGKHVDAN 104

Query: 91  GTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
           G + L  L+E     P   +  ++  +  +     P
Sbjct: 105 GKIYLPYLHEW--KHPQSDLLGLIQVMIVVFGDEPP 138

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 152

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.2 bits (169), Expect = 3e-16
 Identities = 21/107 (19%), Positives = 38/107 (35%), Gaps = 19/107 (17%)

Query: 34  DGSVNLMIWECIIPGKTGTDWEGG---YFPLTLYFSEDYPSKPPKCKFPQGF-------- 82
           DG+  L++    I G   T  +G      P+ ++    YP KPP                
Sbjct: 49  DGTPQLLL---SIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLENFDMNTISS 105

Query: 83  ---FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP 126
                  +  +G + L IL+       A+ +  ++  +  LL +P  
Sbjct: 106 SLPIQEYIDSNGWIALPILHCW--DPAAMNLIMVVQELMSLLHEPPQ 150

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d2uyza1	156	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y6la_	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1z2ua1	147	Ubiquitin conjugating enzyme, UBC {Caenorhabditis	100.0
d2bepa1	154	Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain	100.0
d1z3da1	149	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d1zdna1	151	Ubiquitin conjugating enzyme, UBC {Human(Homo sapi	100.0
d2ucza_	164	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yh2a1	154	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1ayza_	153	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1j7db_	149	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jata_	152	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1i7ka_	146	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1fzya_	149	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1yrva1	148	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1wzva1	150	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1pzva_	161	Ubiquitin conjugating enzyme, UBC {Nematode (Caeno	100.0
d2f4za1	161	Hypothetical protein Tgtwinscan_2721, E2 domain {T	100.0
d2e2ca_	156	Ubiquitin conjugating enzyme, UBC {Clam (Spisula s	100.0
d1c4zd_	144	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1y8xa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2z5da1	152	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1yf9a1	158	Ubiquitin conjugating enzyme, UBC {Leishmania majo	100.0
d2a7la1	117	Ubiquitin-protein ligase W (E2 W) {Human (Homo sap	100.0
d2f4wa1	157	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2awfa1	125	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d2fo3a1	109	Putative ubiquitin-conjugating enzyme, E2 domain {	100.0
d2a4da1	139	Ubiquitin conjugating enzyme, UBC {Human (Homo sap	100.0
d1jatb_	136	Ubiquitin conjugating enzyme, UBC {Baker's yeast (	100.0
d1zuoa1	162	Ubiquitin-conjugating enzyme E2 Q2, C-terminal dom	100.0
d1s1qa_	141	Tumor susceptibility gene 101 (TSG101) {Human (Hom	99.86
d1uzxa_	152	Vacuolar protein sorting-associated {Baker's yeast	99.8
d2in1a1	162	Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapie	98.09
d2daya1	115	E3 ubiquitin-protein ligase RNF25 {Human (Homo sap	96.58
d1ukxa_	137	EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mu	95.07
d2dawa1	141	RWD domain-containing protein 2 {Human (Homo sapie	94.12
d2daxa1	140	Uncharacterized protein C21orf6 {Human (Homo sapie	94.06

>d2uyza1 d.20.1.1 (A:3-158) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc9 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc9 [TaxId: 9606]

Probab=100.00  E-value=8.4e-52  Score=296.62  Aligned_cols=154  Identities=64%  Similarity=1.214  Sum_probs=147.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFF   83 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   83 (160)
                      ++|++||++|+++|+++++.|+++.|..+ ++.+|+++|+++|.||+||||+||.|+|.|.||++||++||+|+|.|++|
T Consensus         1 ~~a~~Rl~~E~~~~~~~~~~g~~~~p~~~~~~~~n~~~W~~~i~gp~gtpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~   80 (156)
T d2uyza1           1 GIALSRLAQERKAWRKDHPFGFVAVPTKNPDGTMNLMNWECAIPGKKGTPWEGGLFKLRMLFKDDYPSSPPKCKFEPPLF   80 (156)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTCEEEEEECTTSCEEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCC
T ss_pred             ChHHHHHHHHHHHHHHCCCCCeEEEecCCCCCCCcccEEEEEEEcCCCCCccCCEEEEEEeCCccccCCCceeeeccccc
Confidence            36899999999999999999999999865 55679999999999999999999999999999999999999999999999


Q ss_pred             cccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           84 HPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        84 Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ||||+.+|.+|+++|...++|+|++|+.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|++|||.
T Consensus        81 HPnV~~~G~icl~~l~~~~~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~k~A~  155 (156)
T d2uyza1          81 HPNVYPSGTVSLSILEEDKDWRPAITIKQILLGIQELLNEPNIQDPAQAEAYTIYCQNRVEYEKRVRAQAKKFAP  155 (156)
T ss_dssp             STTBCTTSBBCCGGGCTTTTCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHTCC
T ss_pred             cccccccceeeecccCcccccCCcccHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence            999999999999999876689999999999999999999999999999999999999999999999999999995

>d1y6la_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch8 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch8 [TaxId: 9606]

Probab=100.00  E-value=3.7e-51  Score=291.15  Aligned_cols=147  Identities=35%  Similarity=0.638  Sum_probs=143.6

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      .|.|||++|+++|+++++.|+++.+..    +|++.|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||
T Consensus         2 ~~~kRi~~E~~~l~~~~~~gi~~~~~~----~n~~~w~~~i~gp~~t~y~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HP   77 (148)
T d1y6la_           2 TSAKRIQKELAEITLDPPPNCSAGPKG----DNIYEWRSTILGPPGSVYEGGVFFLDITFSPDYPFKPPKVTFRTRIYHC   77 (148)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhhCCCCCEEEEECC----cccceeceEEECCCCCCcCCCeEEEEEecCcccCCCCcEEEEeCCCcCc
Confidence            589999999999999999999999977    8999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        86 nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      ||+++|.||++++.+  +|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|++|||+
T Consensus        78 nv~~~G~iCl~~l~~--~W~p~~~l~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~ar~~~~k~A~  148 (148)
T d1y6la_          78 NINSQGVICLDILKD--NWSPALTISKVLLSICSLLTDCNPADPLVGSIATQYMTNRAEHDRMARQWTKRYAT  148 (148)
T ss_dssp             TBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             eECCCCeEEEEecCC--cCCCcEeHHHHHHHHHHHHhCCCCcccccHHHHHHHHHCHHHHHHHHHHHHHHhCC
Confidence            999999999999988  89999999999999999999999999999999999999999999999999999985

>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Caenorhabditis elegans, E2 2 [TaxId: 6239]

Probab=100.00  E-value=9.4e-51  Score=288.72  Aligned_cols=146  Identities=34%  Similarity=0.691  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      +|+|||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|++|||
T Consensus         1 ~a~kRL~~E~~~l~~~~~~~i~~~~~~----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HP   76 (147)
T d1z2ua1           1 MALKRIQKELQDLGRDPPAQCSAGPVG----DDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFTTRIYHP   76 (147)
T ss_dssp             HHHHHHHHHHHHHHHSCCSSEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             CHHHHHHHHHHHHHhCCCCCeEEEECC----CchhhhhheecCCCCCCcCCCceEEEEecCcCCCCCCceEEEecCCcee
Confidence            479999999999999999999999987    8999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        86 nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      ||+++|+||++++..  .|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||++++|||
T Consensus        77 nV~~~G~iCl~~l~~--~w~p~~~i~~Il~~i~~ll~~p~~~~~~n~ea~~~~~~~~~~f~~~~~~~~~k~A  146 (147)
T d1z2ua1          77 NINSNGSICLDILRS--QWSPALTISKVLLSICSLLCDPNPDDPLVPEIARIYKTDRERYNQLAREWTQKYA  146 (147)
T ss_dssp             TBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             eECCCCCEeeehhcc--cCCCCCCHHHHHHHHHHHhccCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHhC
Confidence            999999999999998  8999999999999999999999999999999999999999999999999999997

>d2bepa1 d.20.1.1 (A:1-154) Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2-25 kDa, E2 domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=1.9e-50  Score=289.14  Aligned_cols=150  Identities=31%  Similarity=0.553  Sum_probs=143.8

Q ss_pred             CCCchHHHHHHHHHHHHHHHc---CCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeee
Q 031408            1 MSGGGIARGRLTEERKAWRKN---HPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCK   77 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~---~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   77 (160)
                      ||  +.|.+||++|+++++++   ...++++.+.+    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+
T Consensus         1 Ms--~~a~~Rl~kE~~~l~~~~~~~~~~i~~~~~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~   74 (154)
T d2bepa1           1 MA--NIAVQRIKREFKEVLKSEETSKNQIKVDLVD----ENFTELRGEIAGPPDTPYEGGRYQLEIKIPETYPFNPPKVR   74 (154)
T ss_dssp             CC--HHHHHHHHHHHHHHHHCHHHHTTSEEEEECS----SSSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEE
T ss_pred             Cc--hHHHHHHHHHHHHHHHCCCCCCCcEEEEcCC----CChhheEeeEecCccccccCCeeEEEEeccccccCCCCcce
Confidence            88  99999999999999875   45789988876    89999999999999999999999999999999999999999


Q ss_pred             eccCcccccccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           78 FPQGFFHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        78 f~t~i~Hpnv~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      |.|++|||||+. +|.+|++++.+  .|+|++||.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+||+||
T Consensus        75 f~t~i~Hpni~~~~g~ic~~~~~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~t~k~  152 (154)
T d2bepa1          75 FITKIWHPNISSVTGAICLDILKD--QWAAAMTLRTVLLSLQALLAAAEPDDPQDAVVANQYKQNPEMFKQTARLWAHVY  152 (154)
T ss_dssp             ESSCCCBTTBCTTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             ecccCCCCCeeCCCCccccccccc--cCCCcCCHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHh
Confidence            999999999996 89999999988  899999999999999999999999999999999999999999999999999999


Q ss_pred             CC
Q 031408          157 PP  158 (160)
Q Consensus       157 ~~  158 (160)
                      |+
T Consensus       153 A~  154 (154)
T d2bepa1         153 AG  154 (154)
T ss_dssp             SC
T ss_pred             cC
Confidence            96

>d1z3da1 d.20.1.1 (A:2-150) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-21.5 kDa [TaxId: 6239]

Probab=100.00  E-value=2.1e-50  Score=287.52  Aligned_cols=146  Identities=42%  Similarity=0.789  Sum_probs=142.2

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.|.|||++|+++|+++++.|+++.+..    +|+++|+++|.||++|||+||+|+|.|.||++||++||+|+|.|++||
T Consensus         2 ~pa~rRl~~E~~~l~~~~~~gi~~~p~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (149)
T d1z3da1           2 TPSRRRLMRDFKKLQEDPPAGVSGAPTE----DNILTWEAIIFGPQETPFEDGTFKLSLEFTEEYPNKPPTVKFISKMFH   77 (149)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhhCCCCCEEEEECC----CchhhhceeEECCCCccccCCEEEEEEEecCcCCCCCcEEEecCcccc
Confidence            6789999999999999999999999977    899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      |||+.+|.||+++|..  .|+|++|+.+||.+|+++|.+|++++|+|.+|+++|++|+++|+++||++|+|.
T Consensus        78 PnI~~~G~iCl~~l~~--~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~vr~~~~ks  147 (149)
T d1z3da1          78 PNVYADGSICLDILQN--RWSPTYDVAAILTSIQSLLDEPNPNSPANSLAAQLYQENRREYEKRVQQIVEQS  147 (149)
T ss_dssp             TTBCTTCBBCCGGGTT--SCCTTCCHHHHHHHHHHTTSSCCCSSCSCHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             eeEcCCCCEEeccccc--cCCCCCCHHHHHHHHHHHhCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  899999999999999999999999999999999999999999999999999974

>d1zdna1 d.20.1.1 (A:6-156) Ubiquitin conjugating enzyme, UBC {Human(Homo sapiens), E2 S [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human(Homo sapiens), E2 S [TaxId: 9606]

Probab=100.00  E-value=1.7e-50  Score=288.37  Aligned_cols=147  Identities=27%  Similarity=0.544  Sum_probs=143.5

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      ..++|||++|+++|+++++.|+++.+..    +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||
T Consensus         5 ~~~~kRl~kEl~~l~~~~~~gi~v~p~~----~dl~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   80 (151)
T d1zdna1           5 PHIIRLVYKEVTTLTADPPDGIKVFPNE----EDLTDLQVTIEGPEGTPYAGGLFRMKLLLGKDFPASPPKGYFLTKIFH   80 (151)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCeEEEEcC----cchheeEEEEecCCCcCccCCceeeeeecCCCCCCCCceeecCCCCCC
Confidence            7899999999999999999999999877    799999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |||+.+|.+|++++..  +|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+||++|.
T Consensus        81 PnI~~~G~ic~~~l~~--~W~p~~~l~~il~~i~~~l~~p~~~~p~n~eaa~~~~~~~~~f~~~ar~~~~~~g  151 (151)
T d1zdna1          81 PNVGANGEICVNVLKR--DWTAELGIRHVLLTIKCLLIHPNPESALNEEAGRLLLENYEEYAARARLLTEIHG  151 (151)
T ss_dssp             TTBCTTSBBCHHHHTT--TCCTTCCHHHHHHHHHHHHHSCCGGGCSSHHHHHHHHHCHHHHHHHHHHHHHHHC
T ss_pred             ceecCCCCcccccccc--cCCccccHHHHHHHHHHHHhCCCCCchhhHHHHHHHHHCHHHHHHHHHHHHHhhC
Confidence            9999999999999988  8999999999999999999999999999999999999999999999999999984

>d2ucza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc7 [TaxId: 4932]

Probab=100.00  E-value=4.2e-50  Score=290.07  Aligned_cols=151  Identities=35%  Similarity=0.721  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      ..|+|||++|+++|+++++.|+++.+..+   +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||
T Consensus         2 ~~a~kRL~~E~~~l~~~~~~gi~~~p~~e---~nl~~w~~~I~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   78 (164)
T d2ucza_           2 KTAQKRLLKELQQLIKDSPPGIVAGPKSE---NNIFIWDCLIQGPPDTPYADGVFNAKLEFPKDYPLSPPKLTFTPSILH   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHHSCCTTEEEEESSS---SCCSEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCSC
T ss_pred             HHHHHHHHHHHHHHhhCCCCCEEEEECCc---cchhhhheeeeCCCcccccCCeeEEEEecCCCCCCCCCeEEeecCcee
Confidence            78999999999999999999999998542   699999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHH
Q 031408           85 PNVYPSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQA  153 (160)
Q Consensus        85 pnv~~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~  153 (160)
                      |||+.+|+||+++|..           .+.|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++
T Consensus        79 Pnv~~~G~vCl~il~~~~~~~~~~~~~~~~w~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~~r~~~  158 (164)
T d2ucza_          79 PNIYPNGEVCISILHSPGDDPNMYELAEERWSPVQSVEKILLSVMSMLSEPNIESGANIDACILWRDNRPEFERQVKLSI  158 (164)
T ss_dssp             TTBCTTSBBCCGGGSCCCSCTTSTTTTTTSCCTTCCHHHHHHHHHHHHHSCCGGGCCCHHHHHHHHTTHHHHHHHHHHHH
T ss_pred             ceEcCCCCeeeccccCccccccccccccccCCccccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHCHHHHHHHHHHHH
Confidence            9999999999999964           24699999999999999999999999999999999999999999999999999


Q ss_pred             HhcCC
Q 031408          154 KQYPP  158 (160)
Q Consensus       154 ~~~~~  158 (160)
                      +|+.+
T Consensus       159 ~k~~~  163 (164)
T d2ucza_         159 LKSLG  163 (164)
T ss_dssp             HHHTT
T ss_pred             HHHcC
Confidence            99875

>d1yh2a1 d.20.1.1 (A:1-154) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 T [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 T [TaxId: 9606]

Probab=100.00  E-value=4e-50  Score=287.53  Aligned_cols=148  Identities=28%  Similarity=0.539  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.+||++|+++|+++++.|+++.+..    +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         3 ~~~Rl~kE~~~l~~~~~~gi~~~p~~----~~~~~w~~~I~Gp~~TpY~gg~f~~~i~~p~~YP~~pP~v~f~t~i~HPn   78 (154)
T d1yh2a1           3 RASRLKRELHMLATEPPPGITCWQDK----DQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTPIYHPN   78 (154)
T ss_dssp             HHHHHHHHHHHHHHSCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHCcCCCEEEEECC----cchhhhhceEeCCCCCCCCCCEEEEEEecCccccCCCceeeccCCCCcCC
Confidence            78999999999999999999999977    89999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCC--CCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYPSGTVCLSILNE--DNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~~G~icl~~l~~--~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+++|.||++++..  .+.|+|++++.+||.+|+++|.+|++++|+|.+|+.+|.+|+++|.++||+|++|||.
T Consensus        79 V~~~g~icl~~l~~~~~~~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~r~~~~k~a~  152 (154)
T d1yh2a1          79 IDSAGRICLDVLKLPPKGAWRPSLNIATVLTSIQLLMSEPNPDDPLMADISSEFKYNKPAFLKNARQWTEKHAR  152 (154)
T ss_dssp             BCTTCBBCCGGGSCTTTSCCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHHHHHHSC
T ss_pred             cCCCCCcccccccCCccccCCccccHHHHHHHHHHHhccCCCCCchhHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            99999999999974  2379999999999999999999999999999999999999999999999999999996

>d1ayza_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc2 (RAD6) [TaxId: 4932]

Probab=100.00  E-value=5.9e-50  Score=286.32  Aligned_cols=147  Identities=40%  Similarity=0.769  Sum_probs=143.7

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.|.|||++|+++|+++++.|+++.+..    +|++.|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 t~A~kRl~~El~~l~~~~~~gi~~~p~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~~p~~YP~~pP~v~f~t~i~H   77 (153)
T d1ayza_           2 TPARRRLMRDFKRMKEDAPPGVSASPLP----DNVMVWNAMIIGPADTPYEDGTFRLLLEFDEEYPNKPPHVKFLSEMFH   77 (153)
T ss_dssp             CHHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCC
T ss_pred             CHHHHHHHHHHHHHhHCCCCCEEEEECC----CcHHhHhheeeCCCCCccCCCEEEEEEecCccccCCCCeeeeccCCCc
Confidence            7899999999999999999999999987    899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |||+.+|.||++++..  .|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+++++++
T Consensus        78 PnI~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~~~n~eaa~l~~~~~~~f~~~~~~~~~ks~  148 (153)
T d1ayza_          78 PNVYANGEICLDILQN--RWTPTYDVASILTSIQSLFNDPNPASPANVEAATLFKDHKSQYVKRVKETVEKSW  148 (153)
T ss_dssp             TTBCTTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHTCCCCSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCccccccccc--cCCCcCcHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988  8999999999999999999999999999999999999999999999999999874

>d1j7db_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubc13 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubc13 [TaxId: 9606]

Probab=100.00  E-value=4.7e-50  Score=285.66  Aligned_cols=144  Identities=32%  Similarity=0.642  Sum_probs=141.0

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   87 (160)
                      .|||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||+|+|+|.||++||++||+|+|.|++|||||
T Consensus         4 ~kRl~kEl~~l~~~~~~gi~~~p~~----~n~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPni   79 (149)
T d1j7db_           4 PRRIIKETQRLLAEPVPGIKAEPDE----SNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYPMAAPKVRFMTKIYHPNV   79 (149)
T ss_dssp             CHHHHHHHHHHTTSCCTTEEEEECS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSCCCBTTB
T ss_pred             cHHHHHHHHHHHhCCCCCEEEEECC----CcccEeeeEEECCcccccCCCEEEEEEecCCcccCCCceeeecCCCCCceE
Confidence            4899999999999999999999977    899999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           88 YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        88 ~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      +.+|+||++++..  .|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||+|+++||
T Consensus        80 ~~~G~icl~~l~~--~w~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~ar~~~~kyA  147 (149)
T d1j7db_          80 DKLGRICLDILKD--KWSPALQIRTVLLSIQALLSAPNPDDPLANDVAEQWKTNEAQAIETARAWTRLYA  147 (149)
T ss_dssp             CTTCBBCCGGGTT--SCCTTSCHHHHHHHHHHHHHSCCTTCTTCCSHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred             CCCCcEehHHhcC--CCCCCccHHHHHHHHHHHHhCCCCCChhhHHHHHHHHHCHHHHHHHHHHHHHHhc
Confidence            9999999999988  8999999999999999999999999999999999999999999999999999998

>d1jata_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc13 [TaxId: 4932]

Probab=100.00  E-value=1.7e-50  Score=288.71  Aligned_cols=148  Identities=32%  Similarity=0.634  Sum_probs=143.6

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.+.|||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++||
T Consensus         2 ~~~~rRl~~E~~~l~~~~~~g~~~~p~~----~n~~~w~~~i~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~F~t~i~H   77 (152)
T d1jata_           2 ASLPKRIIKETEKLVSDPVPGITAEPHD----DNLRYFQVTIEGPEQSPYEDGIFELELYLPDDYPMEAPKVRFLTKIYH   77 (152)
T ss_dssp             CSCCHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTEEEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CcHHHHHHHHHHHHHhCCCCCEEEEEcC----CccchhheeeeCCchhhhcCCEEEEEEecCccCCCCCcEEEecCCCCC
Confidence            3467999999999999999999999987    899999999999999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |||+.+|.+|++++..  +|+|+++|.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|+++||.
T Consensus        78 PnI~~~G~icl~~~~~--~W~p~~~i~~il~~i~~ll~~P~~~~p~n~eaa~l~~~d~~~f~~~~r~~~~~~a~  149 (152)
T d1jata_          78 PNIDRLGRICLDVLKT--NWSPALQIRTVLLSIQALLASPNPNDPLANDVAEDWIKNEQGAKAKAREWTKLYAK  149 (152)
T ss_dssp             TTBCTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSTTCCTTHHHHHHCHHHHHHHHHHHHHHHSE
T ss_pred             CcCCCCCCeeeccccc--cCCchhHHHHHHHHHHHHHcCCCCCCcccHHHHHHHHHCHHHHHHHHHHHHHHHhc
Confidence            9999999999999998  89999999999999999999999999999999999999999999999999999984

>d1i7ka_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch10 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch10 [TaxId: 9606]

Probab=100.00  E-value=1.2e-49  Score=282.57  Aligned_cols=145  Identities=32%  Similarity=0.556  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.|||++|+++|+++++.|+++.+..    +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.|++||||
T Consensus         2 ~~kRl~~El~~l~~~~~~~i~~~~~~----~d~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPn   77 (146)
T d1i7ka_           2 VGKRLQQELMTLMMSGDKGISAFPES----DNLFKWVGTIHGAAGTVYEDLRYKLSLEFPSGYPYNAPTVKFLTPCYHPN   77 (146)
T ss_dssp             HHHHHHHHHHHHHHHCCTTEEEEEET----TEEEEEEEEEEBCTTSTTBTCEEEEEEECCTTTTTSCCEEEESSCCCSTT
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEcC----CcccEEEEEEecCccccccCCEEEEEEEecCCCCcCCceeeecCCCCccc
Confidence            68999999999999999999999876    89999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+.+|.||++++..  +|+|++++.+||.+|+++|.+|++++|+|.+||++|+ |+++|.++||++++|||+
T Consensus        78 V~~~G~icl~~l~~--~W~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~l~~-n~~~f~k~~~~~~~K~~~  146 (146)
T d1i7ka_          78 VDTQGNISLDILKE--KWSALYDVRTILLSIQSLLGEPNIDSPLNTHAAELWK-NPTAFKKYLQETYSKQVT  146 (146)
T ss_dssp             BCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSCHHHHHHTT-SHHHHHHHHHHHHHTTCC
T ss_pred             CCCCCccccccccc--cCCCCcCHHHHHHHHHHHHhCCCCCCchhHHHHHHhh-CHHHHHHHHHHHHHccCC
Confidence            99999999999988  8999999999999999999999999999999999995 999999999999999985

>d1fzya_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), ubc1 [TaxId: 4932]

Probab=100.00  E-value=3.4e-49  Score=281.22  Aligned_cols=147  Identities=28%  Similarity=0.587  Sum_probs=140.7

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      +.|||++|+++|+++++.|+++.+..+   +|+++|+++|.||+||||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         2 ~~kRL~~El~~l~~~~~~gi~~~~~~~---~~~~~w~~~I~gp~~t~y~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   78 (149)
T d1fzya_           2 RAKRIMKEIQAVKDDPAAHITLEFVSE---SDIHHLKGTFLGPPGTPYEGGKFVVDIEVPMEYPFKPPKMQFDTKVYHPN   78 (149)
T ss_dssp             HHHHHHHHHHHHHTCGGGCEEEEESCS---SCSSEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             HHHHHHHHHHHHHHCCCCCEEEEECCC---CchhEEEEEEEcCCCCCCCCCceeEEEEecCCcccCCcEEEecCCCcCCc
Confidence            789999999999999999999986542   68999999999999999999999999999999999999999999999999


Q ss_pred             ccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+. +|.+|++++..  .|+|++||.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||+|+++||+
T Consensus        79 I~~~~~~~~~~~~~~--~W~p~~ti~~il~~i~~ll~~p~~~~p~n~eaa~~~~~~~~~f~~~~~~~~~k~A~  149 (149)
T d1fzya_          79 ISSVTGAICLDILKN--AWSPVITLKSALISLQALLQSPEPNDPQDAEVAQHYLRDRESFNKTAALWTRLYAS  149 (149)
T ss_dssp             BCTTTCCBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCTTSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCCcceeechhhcc--cCCCcCCHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHCHHHHHHHHHHHHHHhcC
Confidence            996 88899998887  89999999999999999999999999999999999999999999999999999995

>d1yrva1 d.20.1.1 (A:1-148) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 U [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 U [TaxId: 9606]

Probab=100.00  E-value=1.1e-49  Score=283.19  Aligned_cols=146  Identities=30%  Similarity=0.557  Sum_probs=140.0

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||  +.|.+||++|+++++++++.|+++.+..    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|
T Consensus         1 m~--~~a~~~L~kE~~~l~~~~~~gi~v~p~~----~n~~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t   74 (148)
T d1yrva1           1 MH--GRAYLLLHRDFCDLKENNYKGITAKPVS----EDMMEWEVEIEGLQNSVWQGLVFQLTIHFTSEYNYAPPVVKFIT   74 (148)
T ss_dssp             GG--CHHHHHHHHHHHHHHHHCCTTEEEEECS----TTSCEEEEEEECCTTSTTTTCEEEEEEECCTTBTTBCCEEEESS
T ss_pred             CC--HHHHHHHHHHHHHHHHCCCCCEEEEECC----CcccEEEEEEEeCCCCccCCCceEEEEEeccccccCCceeeecc
Confidence            77  8899999999999999999999999987    89999999999999999999999999999999999999999999


Q ss_pred             Cccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHH
Q 031408           81 GFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQ  152 (160)
Q Consensus        81 ~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~  152 (160)
                      ++|||||+ .+|+||+++|...++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||++
T Consensus        75 ~i~HpnV~~~~G~iC~~~l~~~~~W~p~~tl~~vL~~I~~ll~~p~~~~p~n~eaa~ly~~~~~~f~~~~r~~  147 (148)
T d1yrva1          75 IPFHPNVDPHTGQPCIDFLDNPEKWNTNYTLSSILLALQVMLSNPVLENPVNLEAARILVKDESLYRTILRLF  147 (148)
T ss_dssp             CCCCTTBCTTTCCBCCHHHHCGGGCCTTCCHHHHHHHHHHHHTSCCTTSCSCHHHHHHHHSCHHHHHHHHHHH
T ss_pred             ccccCceecCcccccccccCchhhcCccccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHhh
Confidence            99999999 5899999999644489999999999999999999999999999999999999999999999975

>d1wzva1 d.20.1.1 (A:2-151) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 L6 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 L6 [TaxId: 9606]

Probab=100.00  E-value=5.2e-49  Score=280.54  Aligned_cols=147  Identities=25%  Similarity=0.545  Sum_probs=139.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccc
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPN   86 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   86 (160)
                      |.+||++|+++|+++++.|+++.+.++   +|++.|++.| ||++|||+||+|++.|.||++||++||+|+|.|++||||
T Consensus         1 a~~Rl~kE~~~l~~~~p~gi~~~~~~~---~~~~~w~~ii-gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpn   76 (150)
T d1wzva1           1 ASMRVVKELEDLQKKPPPYLRNLSSDD---ANVLVWHALL-LPDQPPYHLKAFNLRISFPPEYPFKPPMIKFTTKIYHPN   76 (150)
T ss_dssp             CHHHHHHHHHHHHHSCCTTEEEEEECS---SCTTEEEEEE-CCCSTTGGGEEEEEEEECCTTTTSSCCEEEESSCCCBTT
T ss_pred             CHHHHHHHHHHHHHCCCCCEEEEecCC---CceEEEEEEE-CCCCCCccCceeeEEEecCcCCccCCceeeccCCCCcce
Confidence            478999999999999999999988653   6899999876 899999999999999999999999999999999999999


Q ss_pred             ccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           87 VYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        87 v~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      |+++|.||+++|..+ +|+|++++.+||.+|+++|.+|++++|+|.+|+++|.+|+++|.++||+|++|||.
T Consensus        77 I~~~G~icl~~l~~~-~W~p~~~i~~il~~i~~ll~~p~~~~p~n~eaa~~~~~d~~~f~~~a~~~~~kya~  147 (150)
T d1wzva1          77 VDENGQICLPIISSE-NWKPCTKTCQVLEALNVLVNRPNIREPLRMDLADLLTQNPELFRKNAEEFTLRFGV  147 (150)
T ss_dssp             BCTTCBCCCGGGCTT-TCCTTCCHHHHHHHHHHHHHSCCSSSCSSHHHHHHHHHCHHHHHHHHHHHHHHHCE
T ss_pred             ECCCCCccccccccc-CCCchhHHHHHHHHHHHHHhCCCCCCchHHHHHHHHHHCHHHHHHHHHHHHHHhcc
Confidence            999999999999763 89999999999999999999999999999999999999999999999999999984

>d1pzva_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Nematode (Caenorhabditis elegans), E2-19 kDa [TaxId: 6239]

Probab=100.00  E-value=2.8e-48  Score=279.71  Aligned_cols=148  Identities=34%  Similarity=0.617  Sum_probs=140.2

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   87 (160)
                      ..||++|+++|++++++|+++.+..+   +|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++|||||
T Consensus         2 ~~~L~kE~~~l~~~~~~g~~v~~~~~---~dl~~W~~~i~gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnI   78 (161)
T d1pzva_           2 SLLLKKQLADMRRVPVDGFSAGLVDD---NDIYKWEVLVIGPPDTLYEGGFFKAILDFPRDYPQKPPKMKFISEIWHPNI   78 (161)
T ss_dssp             HHHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSSCSSCEEEEEEECCTTGGGSCCEEEECSCCCCTTB
T ss_pred             ChHHHHHHHHHHhCCCCCEEEEECCC---CCceEEEEEEECCcchhhcCCEEEEEEeCCCCCCCCCCeEEecCCCCCccc
Confidence            57999999999999999999998652   689999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeecCCCCC-----------CCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           88 YPSGTVCLSILNED-----------NGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        88 ~~~G~icl~~l~~~-----------~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      +.+|.||+++|...           ++|+|++++.+||.+|+++|.+|++++|+|.+||++|++|+++|.++||++++|+
T Consensus        79 ~~~G~vcl~~l~~~~~~~~~~~~~~~~W~p~~~i~~iL~~i~~ll~~p~~~~p~n~eaa~l~~~~~~~f~~~a~~~v~k~  158 (161)
T d1pzva_          79 DKEGNVCISILHDPGDDKWGYERPEERWLPVHTVETILLSVISMLTDPNFESPANVDAAKMQRENYAEFKKKVAQCVRRS  158 (161)
T ss_dssp             CTTSBBCCGGGCCC---------CCSSCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             CCCCccchhhcCCcccccccccccccccCccccHHHHHHHHHHHHhCCCCCCccCHHHHHHHHHCHHHHHHHHHHHHHHH
Confidence            99999999999651           3699999999999999999999999999999999999999999999999999998


Q ss_pred             CC
Q 031408          157 PP  158 (160)
Q Consensus       157 ~~  158 (160)
                      ..
T Consensus       159 ~e  160 (161)
T d1pzva_         159 QE  160 (161)
T ss_dssp             TT
T ss_pred             hc
Confidence            64

>d2f4za1 d.20.1.1 (A:32-192) Hypothetical protein Tgtwinscan_2721, E2 domain {Toxoplasma gondii [TaxId: 5811]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Hypothetical protein Tgtwinscan 2721, E2 domain
species: Toxoplasma gondii [TaxId: 5811]

Probab=100.00  E-value=6e-48  Score=277.60  Aligned_cols=146  Identities=31%  Similarity=0.655  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHHH-------------cCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCC
Q 031408            7 ARGRLTEERKAWRK-------------NHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKP   73 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~-------------~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~p   73 (160)
                      ..+||++|+++|++             +...|+++.+..    +|+++|+++|.||+||||+||+|+|+|.||++||++|
T Consensus         2 ~~~Rl~ke~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----~nl~~W~~~I~Gp~~TpY~gg~f~~~i~fp~~YP~~p   77 (161)
T d2f4za1           2 EQARLLKELADIQQLQRAHDSEPAATHSTSHGVSAQIVG----GDIHRWRGFIAGPLGTPYEGGHFTLDIVIPPDYPYNP   77 (161)
T ss_dssp             HHHHHHHHHHHHHHC----------------CEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSC
T ss_pred             chhHHHHHHHHHHHHhhccccCcccccCCCCCeEEEecC----CccceeEEEEeCCCCCccCCCEEEEEEeccCCCCCCC
Confidence            57999999999977             445689888877    8999999999999999999999999999999999999


Q ss_pred             CeeeeccCccccccc-CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHH
Q 031408           74 PKCKFPQGFFHPNVY-PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQ  152 (160)
Q Consensus        74 P~v~f~t~i~Hpnv~-~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~  152 (160)
                      |+|+|.|++|||||+ .+|.||++++..  .|+|++||.+||.+|+++|.+|++++|+|.+||++|.+|+++|.++||+|
T Consensus        78 P~V~F~t~i~HPni~~~~G~icl~~l~~--~W~p~~si~~iL~~I~~ll~~P~~~dp~n~eaa~l~~~d~~~y~~~v~~~  155 (161)
T d2f4za1          78 PKMKFVTKIWHPNISSQTGAICLDILKH--EWSPALTIRTALLSIQAMLADPVPTDPQDAEVAKMMIENHPLFVQTAKLW  155 (161)
T ss_dssp             CEEEESSCCCBTTBCTTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHHHSCCTTSCSCHHHHHHHHHCHHHHHHHHHHH
T ss_pred             cEEEecCCCCCCceECCCCCeecCcccc--cCCCcccHHHHHHHHHHHHhCCCCCCchhHHHHHHHHHCHHHHHHHHHHH
Confidence            999999999999997 589999999988  89999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCC
Q 031408          153 AKQYPP  158 (160)
Q Consensus       153 ~~~~~~  158 (160)
                      +++||+
T Consensus       156 t~~~a~  161 (161)
T d2f4za1         156 TETFAK  161 (161)
T ss_dssp             HHHHCC
T ss_pred             HHHHhC
Confidence            999985

>d2e2ca_ d.20.1.1 (A:) Ubiquitin conjugating enzyme, UBC {Clam (Spisula solidissima), E-2C [TaxId: 6584]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Clam (Spisula solidissima), E-2C [TaxId: 6584]

Probab=100.00  E-value=9.4e-48  Score=275.38  Aligned_cols=145  Identities=34%  Similarity=0.615  Sum_probs=138.7

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      .+.|||++|+++|+++++.|+++.|..    +|+++|+++|.||+||||+||+|+++|.||++||++||+|+|.+++|||
T Consensus         9 ~~~kRl~kEl~~l~~~~~~gi~~~p~~----~dl~~W~~~i~Gp~~t~yegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   84 (156)
T d2e2ca_           9 SVSKRLQQELRTLLMSGDPGITAFPDG----DNLFKWVATLDGPKDTVYESLKYKLTLEFPSDYPYKPPVVKFTTPCWHP   84 (156)
T ss_dssp             CHHHHHHHHHHHHHHHCCTTEEEEESS----SCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEESSCCCBT
T ss_pred             hHHHHHHHHHHHHhHCCCCCEEEEECC----CcccEEEEEEEcCCccccCCCEEEEEEEecCCCCCCCceeeccccCcCC
Confidence            578999999999999999999999976    8999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           86 NVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        86 nv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      ||+.+|.||+++|..  .|+|++++.+||.+|+++|.+|++++|+|.+||++|+ |..+|.++||+.+++..
T Consensus        85 nv~~~G~icl~~l~~--~Wsp~~~i~~vl~~i~~ll~~P~~~~p~n~~aa~l~~-n~~~y~k~~~e~~~~~~  153 (156)
T d2e2ca_          85 NVDQSGNICLDILKE--NWTASYDVRTILLSLQSLLGEPNNASPLNAQAADMWS-NQTEYKKVLHEKYKTAQ  153 (156)
T ss_dssp             TBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHTTSCCCSSCSCHHHHHHTT-CHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCccccccCC--CCCCcccHHHHHHHHHHHHhCCCCCChhhHHHHHHHH-CHHHHHHHHHHHHHHHh
Confidence            999999999999988  8999999999999999999999999999999999996 66789999999998753

>d1c4zd_ d.20.1.1 (D:) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), ubch7 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), ubch7 [TaxId: 9606]

Probab=100.00  E-value=1.3e-48  Score=276.70  Aligned_cols=143  Identities=27%  Similarity=0.611  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   88 (160)
                      |||++|+++|+++++.|+.+.+..+   +|+++|+++| ||++|||+||+|++.|.||++||++||+|+|.|++|||||+
T Consensus         2 rRl~kEl~~l~~~~~~~~~~~~~~~---~n~~~w~~~i-gp~~tpY~gg~f~~~i~fp~~YP~~pP~v~f~t~i~HPnV~   77 (144)
T d1c4zd_           2 RRLMKELEEIRKCGMKNFRNIQVDE---ANLLTWQGLI-VPDNPPYDKGAFRIEINFPAEYPFKPPKITFKTKIYHPNID   77 (144)
T ss_dssp             TTHHHHHTTCSSSCCSSCEEECSSC---SSSSEEEEEE-CCCSSSCCSCCEEEEEECCTTTTTSCCEEEESSCCCCTTBC
T ss_pred             HHHHHHHHHHHhCCCCCeEEEECCC---CcceEEEEEE-CCCCcCccCCEEEEEEEecCcccCCCceeeccCCCCCcCCc
Confidence            8999999999999999999877653   7899999998 99999999999999999999999999999999999999999


Q ss_pred             CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      .+|.||+++|... .|+|++++.+||.+|+++|.+|++++|+|.+|+.+|++|+++|.++||+|++||
T Consensus        78 ~~G~icl~~l~~~-~w~p~~~i~~il~~i~~ll~~p~~~~p~n~~aa~~~~~d~~~f~~~a~~~~~ky  144 (144)
T d1c4zd_          78 EKGQVCLPVISAE-NWKPATKTDQVIQSLIALVNDPQPEHPLRADLAEEYSKDRKKFCKNAEEFTKKY  144 (144)
T ss_dssp             TTCBBCCTTTSSS-SCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHTCSSTTHHHHHHHHTTC
T ss_pred             cCCccccccccCC-CCCCcccHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999873 799999999999999999999999999999999999999999999999999997

>d1y8xa1 d.20.1.1 (A:27-183) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 M [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 M [TaxId: 9606]

Probab=100.00  E-value=9.4e-46  Score=265.17  Aligned_cols=144  Identities=24%  Similarity=0.496  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      +.|.+||++|+++|++.  .++.+....   ++|+++|+++| ||++|||+||.|+++|.||++||++||+|+|.+++||
T Consensus         2 ~~a~~Rl~kEl~~l~~~--~~~~i~~~~---~~~l~~w~~~i-~p~~t~Y~gg~f~~~i~fp~~YP~~pP~V~f~t~i~H   75 (157)
T d1y8xa1           2 SAAQLRIQKDINELNLP--KTCDISFSD---PDDLLNFKLVI-CPDEGFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYH   75 (157)
T ss_dssp             CHHHHHHHHHHHTCCCC--TTEEEECSS---TTCTTEEEEEE-CCSSSTTTTBCEEEEEECCTTTTTSCCEEEECSCCCB
T ss_pred             CHHHHHHHHHHHHhCCC--CCCcEEEcC---CCcceEEEEEE-CCCCCCcCCCeEEEEEEecCCCCCCCceeeecccCCC
Confidence            78999999999999654  455554322   27899999998 8999999999999999999999999999999999999


Q ss_pred             ccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhc
Q 031408           85 PNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQY  156 (160)
Q Consensus        85 pnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~  156 (160)
                      |||+.+|.||++++..  +|+|++++.+||.+|+++|.+|++++|+|.+|+++|++|+++|.++||++++..
T Consensus        76 Pnv~~~G~ic~~~~~~--~W~p~~~i~~il~~I~~ll~~Pn~~~p~n~eaa~l~~~~~~~f~~~v~~~~~~~  145 (157)
T d1y8xa1          76 PNIDLEGNVCLNILRE--DWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGG  145 (157)
T ss_dssp             TTBCTTCBBCCGGGTT--TCCTTCCHHHHHHHHHHHHHSCCCSSCSCHHHHHHHHSCHHHHHHHHHHHHHSE
T ss_pred             ccccccceeeeeeccc--CCCCCCcHHHHHHHHHHHHcCCCCcChHHHHHHHHHHHCHHHHHHHHHHHHcCC
Confidence            9999999999999987  899999999999999999999999999999999999999999999999999854

>d1yf9a1 d.20.1.1 (A:13-170) Ubiquitin conjugating enzyme, UBC {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Leishmania major [TaxId: 5664]

Probab=100.00  E-value=1.3e-44  Score=259.24  Aligned_cols=141  Identities=26%  Similarity=0.485  Sum_probs=130.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccccc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNV   87 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv   87 (160)
                      .|||++|+++|++++..   +.+ .    +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|++|||||
T Consensus         2 ~rr~~~e~~~l~~~~~~---~~~-~----d~~~~w~v~i~Gp~~TpY~gg~f~~~i~fp~~YP~~pP~v~F~t~i~HPnI   73 (158)
T d1yf9a1           2 NRRREMDYMRLCNSTRK---VYP-S----DTVAEFWVEFKGPEGTPYEDGTWMLHVQLPSDYPFKSPSIGFCNRILHPNV   73 (158)
T ss_dssp             CHHHHHHHHHHHSSSSC---EEE-C----SSTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESSCCCBTTB
T ss_pred             chHHHHHHHHHhcCCCc---CCC-C----CCceEEEEEEECCCCCCccCcEEEEEEECcccchhhceeEEecCCCCCCCC
Confidence            58999999999877643   344 2    699999999999999999999999999999999999999999999999999


Q ss_pred             cC-CCceeecCCCCCCCCCCcCCHHHHHHH-HHHhhcCCCCCCccCHHHHHHHhhCHHHHHHHHHHHHHhcCC
Q 031408           88 YP-SGTVCLSILNEDNGWRPAITVKQILVG-IQDLLDQPNPADPAQTDGYQLFIQDPAEYKRRVRQQAKQYPP  158 (160)
Q Consensus        88 ~~-~G~icl~~l~~~~~W~p~~~i~~vl~~-i~~ll~~p~~~~p~n~~a~~~~~~~~~~f~~~~r~~~~~~~~  158 (160)
                      +. +|.||+++|..  +|+|++++.++|.. |+.+|.+|++++|+|.+||++|++|+++|.++||+||++||.
T Consensus        74 ~~~~G~vcl~il~~--~W~p~~~i~~il~~~i~~ll~~P~~~~p~N~eaa~l~~~n~~~f~~~~k~~~~k~a~  144 (158)
T d1yf9a1          74 DERSGSVCLDVINQ--TWTPMYQLENIFDVFLPQLLRYPNPSDPLNVQAAHLLHADRVGFDALLREHVSTHAT  144 (158)
T ss_dssp             CTTTCBBCHHHHHH--HCCTTCCTHHHHHTHHHHHHHSCCSSCCSCHHHHHHHHHCHHHHHHHHHHHHHHHCC
T ss_pred             ccCccccccccccc--ccCchHhhhhHHHHHHHHHhcCCCCCcchhHHHHHHHHHCHHHHHHHHHHHHHHHCC
Confidence            86 89999999987  89999999999975 778889999999999999999999999999999999999985

>d2a7la1 d.20.1.1 (A:1-117) Ubiquitin-protein ligase W (E2 W) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-protein ligase W (E2 W)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.1e-41  Score=230.22  Aligned_cols=115  Identities=33%  Similarity=0.644  Sum_probs=105.4

Q ss_pred             CCCchHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            1 MSGGGIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         1 ms~~~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ||  + +.|||++|+++|+++++.|+++.+...  ++|+++|+++|.||+||||+||.|+++|.||++||++||+|+|.|
T Consensus         1 m~--~-~~kRL~kEl~~l~~~~~~~~~~~~~~~--~~~l~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t   75 (117)
T d2a7la1           1 MA--S-MQKRLQKELLALQNDPPPGMTLNEKSV--QNSITQWIVDMEGAPGTLYEGEKFQLLFKFSSRYPFDSPQVMFTG   75 (117)
T ss_dssp             GT--T-SCHHHHHHHHHHHHSCCTTCCCCTTCC--CCSCEEEEEEEECCTTSTTTTCEEEEEEEECTTTTTSCCEEEEES
T ss_pred             CC--c-HHHHHHHHHHHHhhCCCCCeEEEEecC--CCCceEEEEEEeCCCCccccCCeeeEEEecCcccccCCCEEEEeC
Confidence            66  3 469999999999999999998765432  268999999999999999999999999999999999999999999


Q ss_pred             Cc--ccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408           81 GF--FHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (160)
Q Consensus        81 ~i--~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~  122 (160)
                      ++  |||||+.+|+||+++|.+  +|+|++|+++||.+|+++|.
T Consensus        76 ~~~~~Hpnv~~~G~iCl~~l~~--~Wsp~~ti~~vl~~i~~lLs  117 (117)
T d2a7la1          76 ENIPVHPHVYSNGHICLSILTE--DWSPALSVQSVCLSIISMLS  117 (117)
T ss_dssp             SCCCCBTTBCTTCBBCCGGGTT--TCCTTSCHHHHHHHHHHHTC
T ss_pred             CCccccccCcCCCeEEeecCcC--CCCCcCcHHHHHHHHHHHhC
Confidence            76  999999999999999987  89999999999999999873

>d2f4wa1 d.20.1.1 (A:12-168) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 J2 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 J2 [TaxId: 9606]

Probab=100.00  E-value=5.2e-40  Score=235.30  Aligned_cols=146  Identities=23%  Similarity=0.403  Sum_probs=122.9

Q ss_pred             HHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCcccc
Q 031408            6 IARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHP   85 (160)
Q Consensus         6 ~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hp   85 (160)
                      +|+|||++|+++|+++++.|+++.+.+    +|+++|+++|.||++|||+||.|++.|.||++||++||+|+|.|+++||
T Consensus         1 tA~kRl~kE~~~l~~~p~~g~~~~p~~----~n~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~~~~~   76 (157)
T d2f4wa1           1 TATQRLKQDYLRIKKDPVPYICAEPLP----SNILEWHYVVRGPEMTPYEGGYYHGKLIFPREFPFKPPSIYMITPNGRF   76 (157)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTEEEEEET----TEEEEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCSSB
T ss_pred             CHHHHHHHHHHHHHhCCCCCEEEEEcC----cccceeeeEEECCCCccccCCEEEEEEeccCCcCCCCCEEEeeCCCccc
Confidence            389999999999999999999999987    8999999999999999999999999999999999999999999998888


Q ss_pred             cccCCCceeecCCCC-CCCCCCcCCHHHHHHHHHHhhcCCCCCC--ccCH-HHHHHHhhCHHHHHHHHHHHHHhcC
Q 031408           86 NVYPSGTVCLSILNE-DNGWRPAITVKQILVGIQDLLDQPNPAD--PAQT-DGYQLFIQDPAEYKRRVRQQAKQYP  157 (160)
Q Consensus        86 nv~~~G~icl~~l~~-~~~W~p~~~i~~vl~~i~~ll~~p~~~~--p~n~-~a~~~~~~~~~~f~~~~r~~~~~~~  157 (160)
                      |++  |++|+.++.. .++|+|++||.+||.+|+++|.+|+++.  +.+. .+...|..+..+|..+++.++++|.
T Consensus        77 ~~~--g~~~~~~l~~~~~~Wsp~~ti~~il~~i~~ll~~p~p~~~~~~~~~~~~~~~~~~~~~f~~k~~~~~~~~~  150 (157)
T d2f4wa1          77 KCN--TRLCLSITDFHPDTWNPAWSVSTILTGLLSFMVEKGPTLGSIETSDFTKRQLAVQSLAFNLKDKVFCELFP  150 (157)
T ss_dssp             CTT--SCBC----------CCTTCCHHHHHHHHHHHHHSCCCCTTBCCCCHHHHHHHHHHHHHHHHTCHHHHHHCH
T ss_pred             CCC--CCeeeeeccccCCCCCccCcHHHHHHHHHHHccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776  4444444321 1279999999999999999999988754  3434 4455788889999999999999875

>d2awfa1 d.20.1.1 (A:7-131) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 G1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 G1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=225.50  Aligned_cols=113  Identities=39%  Similarity=0.691  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccccccc
Q 031408            9 GRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVY   88 (160)
Q Consensus         9 ~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~   88 (160)
                      -||+||+++++++++.|+.+.+.++   +|+++|+++|.||++|||+||+|+++|.||++||++||+|+|.|+++||||+
T Consensus         2 ~~L~kEl~~l~~~~~~gi~~~~~~~---~dl~~w~~~i~Gp~~tpyegg~f~~~i~fp~~YP~~pP~v~f~t~i~Hpni~   78 (125)
T d2awfa1           2 LLLRRQLAELNKNPVEGFSAGLIDD---NDLYRWEVLIIGPPDTLYEGGVFKAHLTFPKDYPLRPPKMKFITEIWHPNVD   78 (125)
T ss_dssp             HHHHHHHHHHHHSCCTTEEEEESST---TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTSSCCEEEECSCCCCTTBC
T ss_pred             chHHHHHHHHHhCCCCCEEEEeCCC---CCceEEEEEEeCCCCcccCCCeeEEEEecCCCcCCCCCeEEecCCCCccccC
Confidence            5899999999999999999987542   6899999999999999999999999999999999999999999999999999


Q ss_pred             CCCceeecCCCC-----------CCCCCCcCCHHHHHHHHHHhhcCC
Q 031408           89 PSGTVCLSILNE-----------DNGWRPAITVKQILVGIQDLLDQP  124 (160)
Q Consensus        89 ~~G~icl~~l~~-----------~~~W~p~~~i~~vl~~i~~ll~~p  124 (160)
                      .+|+||+++|..           .++|+|++|+++||.+|+++|.+|
T Consensus        79 ~~G~iCl~iL~~~~~~~~~~~~~~~~Wsp~~ti~~iL~~i~~ll~~P  125 (125)
T d2awfa1          79 KNGDVCISILHEPGEDKYGYEKPEERWLPIHTVETIMISVISMLADP  125 (125)
T ss_dssp             TTCBBCCGGGSCC---------CTTSCCTTCCHHHHHHHHHHHHSCC
T ss_pred             CCCEEEeccccCccccccccccccCCcCccCcHHHHHHHHHHHhhCc
Confidence            999999999964           247999999999999999999876

>d2fo3a1 d.20.1.1 (A:9-117) Putative ubiquitin-conjugating enzyme, E2 domain {Plasmodium chabaudi [TaxId: 5825]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Putative ubiquitin-conjugating enzyme, E2 domain
species: Plasmodium chabaudi [TaxId: 5825]

Probab=100.00  E-value=3e-39  Score=218.16  Aligned_cols=107  Identities=28%  Similarity=0.573  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc-cccccc
Q 031408           10 RLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF-FHPNVY   88 (160)
Q Consensus        10 Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i-~Hpnv~   88 (160)
                      ||++|+++++++++.|+++.+.+    +|+++|++.|.||++|||+||.|+++|.||++||++||+|+|.|++ +||||+
T Consensus         2 Rl~kEl~~l~~~~~~g~~~~~~~----~~~~~w~~~i~gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~F~t~~~~hpni~   77 (109)
T d2fo3a1           2 RIQKELHNFLNNPPINCTLDVHP----NNIRIWIVKYVGLENTIYANEVYKLKIIFPDDYPLKPPIVYFLQKPPKHTHVY   77 (109)
T ss_dssp             HHHHHHHHHHHSCCTTEEEEECT----TCTTEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEECSSCCCBTTBC
T ss_pred             HHHHHHHHHHhCCCCCEEEEEcC----CcccEEEEEEecCchhhhcCCCceEEEEeccccCCCCCeEEEEeccccCceEC
Confidence            89999999999999999998866    8999999999999999999999999999999999999999999975 899999


Q ss_pred             CCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhc
Q 031408           89 PSGTVCLSILNEDNGWRPAITVKQILVGIQDLLD  122 (160)
Q Consensus        89 ~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~  122 (160)
                      .+|+||+++|.+  +|+|++|+++||.+|+++|.
T Consensus        78 ~~G~iCl~il~~--~Wsp~~ti~~vl~~i~~lls  109 (109)
T d2fo3a1          78 SNGDICLSLLGD--DYNPSLSISGLVLSIISMLS  109 (109)
T ss_dssp             TTSBBCCGGGTT--TCCTTCCHHHHHHHHHHHHC
T ss_pred             CCCeEEeecccC--CCCccCCHHHHHHHHHHHhC
Confidence            999999999988  89999999999999999873

>d2a4da1 d.20.1.1 (A:82-220) Ubiquitin conjugating enzyme, UBC {Human (Homo sapiens), E2 variant 1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Human (Homo sapiens), E2 variant 1 [TaxId: 9606]

Probab=100.00  E-value=1.1e-39  Score=228.83  Aligned_cols=130  Identities=23%  Similarity=0.322  Sum_probs=116.8

Q ss_pred             hHHHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCccc
Q 031408            5 GIARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGFFH   84 (160)
Q Consensus         5 ~~~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i~H   84 (160)
                      ..+.+||++|+++++++++.++.+.+..+++++|+++|+++|.||++|||+||.|+++|.||++||++||+|+|.|+++|
T Consensus         4 ~~r~~RL~kEl~~l~k~~~~~~~~~~~~~~~d~nl~~W~~~I~Gp~~TpYegg~f~~~i~fp~~YP~~pP~v~F~t~i~H   83 (139)
T d2a4da1           4 VPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINM   83 (139)
T ss_dssp             HHHHHHHHHHHHHHHSCCTTSSEEEEESSTTCTTCCEEEEEEECCTTSTTTTCEEEEEEECCTTTTTSCCEEEESBCCCC
T ss_pred             cchhHHHHHHHHHHhhCCCCCceeeeccCCCcccccEEEEEEECCCCCchhcCEEEEEEECCCCCCCCCCEEEEecCccc
Confidence            35889999999999999999988888777667899999999999999999999999999999999999999999999999


Q ss_pred             ccccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCC-CCCCccCHHH
Q 031408           85 PNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQP-NPADPAQTDG  134 (160)
Q Consensus        85 pnv~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p-~~~~p~n~~a  134 (160)
                      |||+. +|.+|...+...++|+|++||++||.+|+++|.+| +.+.|.|+|.
T Consensus        84 pnV~~~~g~~~~~~l~~l~~Wsp~~ti~~iL~~i~slL~~peN~~~p~~~e~  135 (139)
T d2a4da1          84 NGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG  135 (139)
T ss_dssp             TTBCTTTCBBCGGGSHHHHTCCTTCCHHHHHHHHHHHHTSTTTTTCCCCCTT
T ss_pred             ccCcCCCCEEcceecCcccCCCccCcHHHHHHHHHHHHCCCCCCCCCCCCCc
Confidence            99995 68888776652127999999999999999999776 7888888873

>d1jatb_ d.20.1.1 (B:) Ubiquitin conjugating enzyme, UBC {Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin conjugating enzyme, UBC
species: Baker's yeast (Saccharomyces cerevisiae), mms2 [TaxId: 4932]

Probab=100.00  E-value=4.4e-40  Score=229.89  Aligned_cols=130  Identities=21%  Similarity=0.328  Sum_probs=110.5

Q ss_pred             chHHHHHHHHHHHHHHHcCC-CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEEEEEeCCCCCCCCCeeeeccCc
Q 031408            4 GGIARGRLTEERKAWRKNHP-HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQGF   82 (160)
Q Consensus         4 ~~~~~~Rl~~E~~~l~~~~~-~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~i   82 (160)
                      +..+.+||++|+++++++.+ .+++... ..+++.|+++|+++|.||++|||+||+|++.|.||++||++||+|+|.|++
T Consensus         2 ~~p~~~RL~kEl~~~~k~~~~~~~~~~~-~~~dd~~l~~W~~~i~Gp~~tpy~gg~f~~~i~fp~~YP~~PP~v~f~t~i   80 (136)
T d1jatb_           2 KVPRNFRLLEELEKGEKGFGPESCSYGL-ADSDDITMTKWNGTILGPPHSNHENRIYSLSIDCGPNYPDSPPKVTFISKI   80 (136)
T ss_dssp             CCCHHHHHHHHHHHHHC----CCEEEEE-SSTTCTTCCEEEEEEECCSSSTTTTCEEEEEEECCTTTTTSCCEEEESBCC
T ss_pred             CCchHHHHHHHHHHHhccCCCCcEEEee-cCCCCCceeEEEEEEECCCCChhhcCEEEEEEEecCCCCCCCCEEEEeccc
Confidence            45789999999999999864 4454444 434456899999999999999999999999999999999999999999999


Q ss_pred             ccccccC-CCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHH
Q 031408           83 FHPNVYP-SGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGY  135 (160)
Q Consensus        83 ~Hpnv~~-~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~  135 (160)
                      |||||+. +|.||++++... +|+|++||.+||.+|+++|.+|+....+++++.
T Consensus        81 ~HpnV~~~~G~icl~~l~~~-~Wsp~~ti~~IL~~i~~lL~~P~n~~~~q~~~g  133 (136)
T d1jatb_          81 NLPCVNPTTGEVQTDFHTLR-DWKRAYTMETLLLDLRKEMATPANKKLRQPKEG  133 (136)
T ss_dssp             CCTTBCTTTCBBCTTSHHHH-TCCTTCCHHHHHHHHHHHHTSHHHHTSCCCCTT
T ss_pred             cccccccCCCeEECCCCccc-CcCccCcHHHHHHHHHHHHcCCCCCCCCCCCCC
Confidence            9999995 799999988642 799999999999999999999887666665543

>d1zuoa1 d.20.1.1 (A:201-362) Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UBC-related
domain: Ubiquitin-conjugating enzyme E2 Q2, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-39  Score=234.25  Aligned_cols=144  Identities=18%  Similarity=0.377  Sum_probs=123.2

Q ss_pred             CchHHHHHHHHHHHHHHHcCC--CCe-EEeecCCCCCCCcceEEEEEcC-CCCCCCCCCE-----------EEEEEEeCC
Q 031408            3 GGGIARGRLTEERKAWRKNHP--HGF-VAKPETKDGSVNLMIWECIIPG-KTGTDWEGGY-----------FPLTLYFSE   67 (160)
Q Consensus         3 ~~~~~~~Rl~~E~~~l~~~~~--~~~-~~~~~~~~~~~~~~~w~~~i~G-p~~tpy~gg~-----------f~~~i~fp~   67 (160)
                      ||..|.+||++||++|++++.  .|+ .+.+.+    +|+++|++.|.| |++|||+||.           |++.|.||+
T Consensus         1 gs~~a~~RL~kEl~~l~k~~~~~~~~~~v~~~~----dnl~~W~v~i~g~p~~tp~~~g~~~~~~~~g~~~~~l~i~fp~   76 (162)
T d1zuoa1           1 GSVQASDRLMKELRDIYRSQSYKTGIYSVELIN----DSLYDWHVKLQKVDPDSPLHSDLQILKEKEGIEYILLNFSFKD   76 (162)
T ss_dssp             CCHHHHHHHHHHHHHHHTSHHHHTTSEEEEEET----TEEEEEEEEECCCCTTSHHHHHHHHHHHHHSCCSEEEEEECCT
T ss_pred             CcHHHHHHHHHHHHHHHhCCCCCCCeEEeecCC----CcccEEEEEEEecCCCCchhcchhhhhcccCCceEEEEEECCC
Confidence            678999999999999987654  344 444444    799999999999 8999999876           999999999


Q ss_pred             CCCCCCCeeeeccCcccccc-cCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCC--CCccCHHHHHHHhhCHHH
Q 031408           68 DYPSKPPKCKFPQGFFHPNV-YPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNP--ADPAQTDGYQLFIQDPAE  144 (160)
Q Consensus        68 ~YP~~pP~v~f~t~i~Hpnv-~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~--~~p~n~~a~~~~~~~~~~  144 (160)
                      +||++||+|+|.|++||||+ +.+|.||+++|..+ +|+|++||.+||.+|+++|.+|++  +.+.|.+++++. +++++
T Consensus        77 ~YP~~PP~v~f~t~i~hpn~~~~~G~iCl~iL~~~-~WsP~~ti~~IL~~i~~ll~~~~p~~~~~~~~~~y~~~-~~~~~  154 (162)
T d1zuoa1          77 NFPFDPPFVRVVLPVLSGGYVLGGGALCMELLTKQ-GWSSAYSIESVIMQINATLVKGKARVQFGANKNQYNLA-RAQQS  154 (162)
T ss_dssp             TTTSSCCEEEEEESCEESTTBCGGGBBCCGGGSTT-TCCTTSCHHHHHHHHHHHHHHTTCEECTTCCTTCCCHH-HHHHH
T ss_pred             chhhhcceEEEEEEeeccccccCCceeecccccCC-CCCCcccHHHHHHHHHHHHcCCCCCCCCCcCHHHHHHH-HhHHH
Confidence            99999999999999999985 67999999999763 799999999999999999977654  667777776654 56788


Q ss_pred             HHHHHHHH
Q 031408          145 YKRRVRQQ  152 (160)
Q Consensus       145 f~~~~r~~  152 (160)
                      |++.||.+
T Consensus       155 y~~~~~~~  162 (162)
T d1zuoa1         155 YNSIVQIH  162 (162)
T ss_dssp             HHHHHHHC
T ss_pred             HHHHHhhC
Confidence            99999863

>d1s1qa_ d.20.1.2 (A:) Tumor susceptibility gene 101 (TSG101) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Tumor susceptibility gene 101 (TSG101)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=3.7e-22  Score=139.39  Aligned_cols=108  Identities=14%  Similarity=0.132  Sum_probs=88.5

Q ss_pred             HHHHHHHHHHHcCC---CCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCEEEE--EEEeCCCCCCCCCeeeeccC---
Q 031408           10 RLTEERKAWRKNHP---HGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGYFPL--TLYFSEDYPSKPPKCKFPQG---   81 (160)
Q Consensus        10 Rl~~E~~~l~~~~~---~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~f~~--~i~fp~~YP~~pP~v~f~t~---   81 (160)
                      +..+|+.++.+.-+   ++..+....    ++...|.+.|.|+.+++|+||+|.+  .|.||++||++||.|.|.+.   
T Consensus        18 ~~~~d~~~~l~~~~~l~p~~~~f~~~----dg~~~~ll~l~G~~~~~y~g~~y~~pi~i~~p~~YP~~pP~v~~~pt~~~   93 (141)
T d1s1qa_          18 LTVRETVNVITLYKDLKPVLDSYVFN----DGSSRELMNLTGTIPVPYRGNTYNIPICLWLLDTYPYNPPICFVKPTSSM   93 (141)
T ss_dssp             HHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEEEEEETTEEEEEEEEEEECTTTTSSCCEEEECCCTTC
T ss_pred             hHHHHHHHHHHhCCCCCCccceEEeC----CCCceEEEEEECCCCcccCCCEEEEEEEEECCccCCCCCCEEEEecCCCc
Confidence            44557766766543   344444444    6788999999999999999999998  66689999999999988753   


Q ss_pred             --cccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcC
Q 031408           82 --FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQ  123 (160)
Q Consensus        82 --i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~  123 (160)
                        ++||||+.+|+||+++|..  .|.+..++.+++..|+++|.+
T Consensus        94 ~~~~h~~V~~~G~V~lp~L~~--W~~~~s~L~~ll~~L~~~f~~  135 (141)
T d1s1qa_          94 TIKTGKHVDANGKIYLPYLHE--WKHPQSDLLGLIQVMIVVFGD  135 (141)
T ss_dssp             EECCSSSBCTTCBBCCHHHHT--CCTTTCCHHHHHHHHHHHHHH
T ss_pred             cccCCCeECCCCCCcchhhcC--CCcccccHHHHHHHHHHHhCC
Confidence              7899999999999999977  556778999999999999965

>d1uzxa_ d.20.1.2 (A:) Vacuolar protein sorting-associated {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UEV domain
domain: Vacuolar protein sorting-associated
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.80  E-value=1.3e-19  Score=127.69  Aligned_cols=114  Identities=18%  Similarity=0.181  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHHHcCCC---CeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE---EEEEEEeCCCCCCCCCeeeeccC
Q 031408            8 RGRLTEERKAWRKNHPH---GFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY---FPLTLYFSEDYPSKPPKCKFPQG   81 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~---~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~---f~~~i~fp~~YP~~pP~v~f~t~   81 (160)
                      -+|+.+|+.++.++-+.   ........    +....+.+.+.|.-..+|+|++   |.+.|.||++||+.||.|+|.+.
T Consensus        21 ~~~v~~dv~~~l~~y~~L~p~~~~~~~~----dg~~~~Ll~l~Gtipi~y~g~~~y~ipi~I~lP~~YP~~pP~v~~~~~   96 (152)
T d1uzxa_          21 GRTTFHDSLALLDNFHSLRPRTRVFTHS----DGTPQLLLSIYGTISTGEDGSSPHSIPVIMWVPSMYPVKPPFISINLE   96 (152)
T ss_dssp             HHHHHHHHHHHHHHCTTEEEEEEEEECT----TSCEEEEEEEEEEECCC-------CEEEEEECCTTTTTSCCEEEECCT
T ss_pred             cchHHHHHHHHHHhCCCCCcccceeecC----CCCcceEEEEEcccccccCCCceeEEEEEEEcCCCCCCCCCEEEEecC
Confidence            46888898888776431   22222222    4456677888888889999996   78889999999999999999764


Q ss_pred             -----------cccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCC
Q 031408           82 -----------FFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPA  127 (160)
Q Consensus        82 -----------i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~  127 (160)
                                 ++|||||.+|+||+++|..  .|.+..++.+++..|+.+|.++..+
T Consensus        97 ~~~~~~~~~~i~~hp~Vd~~G~V~lp~L~~--W~~~~s~L~~ll~~l~~~f~~~P~d  151 (152)
T d1uzxa_          97 NFDMNTISSSLPIQEYIDSNGWIALPILHC--WDPAAMNLIMVVQELMSLLHEPPQD  151 (152)
T ss_dssp             TCCSCC----CGGGGGBCTTSCBCCHHHHS--CCTTTCCHHHHHHHHHTGGGSCCCC
T ss_pred             cccccCCCcccccCCCCCCCCcEehHHhcC--CCCccCcHHHHHHHHHHHhcCCCCC
Confidence                       5799999999999999988  6788999999999999999877543

>d2in1a1 d.20.1.4 (A:3-164) Ufm1-conjugating enzyme 1, UFC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: UFC1-like
domain: Ufm1-conjugating enzyme 1, UFC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.7e-07  Score=61.14  Aligned_cols=97  Identities=23%  Similarity=0.436  Sum_probs=59.6

Q ss_pred             HHHHHHHHHHHHHHcCCCCeEEeecCCCCCCCcceEEEEEcCCCCCCCCCCE----------EEEEEEeCCCCCCCCCee
Q 031408            7 ARGRLTEERKAWRKNHPHGFVAKPETKDGSVNLMIWECIIPGKTGTDWEGGY----------FPLTLYFSEDYPSKPPKC   76 (160)
Q Consensus         7 ~~~Rl~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~w~~~i~Gp~~tpy~gg~----------f~~~i~fp~~YP~~pP~v   76 (160)
                      =..||+.||..|-+...       .....++|++....   -++||-|.|.|          |.+.+.+|..||..||.|
T Consensus        26 W~~RLKEEy~aLI~Yv~-------nNK~~dndWF~les---n~~GT~W~GkCWyihnl~kYeFd~eFdIP~tYP~t~pEi   95 (162)
T d2in1a1          26 WVQRLKEEYQSLIRYVE-------NNKNADNDWFRLES---NKEGTRWFGKCWYIHDLLKYEFDIEFDIPITYPTTAPEI   95 (162)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHTTCCCEEEEE---CTTSSEEEEEEEEEETTEEEEEEEEEECCTTTTTSCCCC
T ss_pred             HHHHHHHHHHHHHHHHH-------hcccccCCeEEecc---CCCCCeeeceeeEEEeeeEEEEEEEeccCCCCCCCCcce
Confidence            35899999998844210       00011134443332   25566665544          455666799999999999


Q ss_pred             eecc-CcccccccCCCceeecCCCCCCCC---CCcCCHHHHH
Q 031408           77 KFPQ-GFFHPNVYPSGTVCLSILNEDNGW---RPAITVKQIL  114 (160)
Q Consensus        77 ~f~t-~i~Hpnv~~~G~icl~~l~~~~~W---~p~~~i~~vl  114 (160)
                      .... .--....|..|+||++.-... -|   .|..+|.+.|
T Consensus        96 ~lPeLdGKTaKMYRGGkIClt~HFkP-LWarN~PkfGIaHal  136 (162)
T d2in1a1          96 AVPELDGKTAKMYRGGKICLTDHFKP-LWARNVPKFGLAHLM  136 (162)
T ss_dssp             BCGGGSSSCSSSCGGGBCCCCTTSHH-HHHTTTTSCCHHHHH
T ss_pred             eccccCCchhhhhcCceeeccccchh-hhhhcCCchhHHHHH
Confidence            8753 122344566799999877653 35   4567777765

>d2daya1 d.20.1.3 (A:8-122) E3 ubiquitin-protein ligase RNF25 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: E3 ubiquitin-protein ligase RNF25
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.58  E-value=0.0095  Score=37.85  Aligned_cols=67  Identities=15%  Similarity=0.094  Sum_probs=41.5

Q ss_pred             HHHHHHHHHHcCCCCeEEeecCCCCCCCcce--EEEEEcCCC--CCCCCCCEEEEEEEeCCCCCCCCCeeeeccC
Q 031408           11 LTEERKAWRKNHPHGFVAKPETKDGSVNLMI--WECIIPGKT--GTDWEGGYFPLTLYFSEDYPSKPPKCKFPQG   81 (160)
Q Consensus        11 l~~E~~~l~~~~~~~~~~~~~~~~~~~~~~~--w~~~i~Gp~--~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t~   81 (160)
                      +..|+..|+.--+..+......    +....  ..+.+....  +..=......+.+.+|++||.++|.+.+...
T Consensus         6 ~~~EleaL~SIY~d~~~~~~~~----~~~~~~~~~i~~~~~~~~~~~~~~~~v~L~~~~p~~YP~~~P~i~~~~~   76 (115)
T d2daya1           6 LPSEVEVLESIYLDELQVIKGN----GRTSPWEIYITLHPATAEDQDSQYVCFTLVLQVPAEYPHEVPQISIRNP   76 (115)
T ss_dssp             HHHHHHHHHHHSTTTEEEECCT----TSSCCEEEEEEECCSCCSSSSCCCCEEEEEEEECSSTTSSCCEEEEEEE
T ss_pred             HHHHHHHHHhHCCCceEEeccC----CCCCCeEEEEEEecCCCCCCcccceEEEEEEEcCCCCCCCCCcEEeecc
Confidence            5678988888666666554322    33333  344444211  1111224688889999999999999987543

>d1ukxa_ d.20.1.3 (A:) EIF2-alpha kinase 4 (GCN2-like protein) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: EIF2-alpha kinase 4 (GCN2-like protein)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.07  E-value=0.22  Score=32.06  Aligned_cols=73  Identities=11%  Similarity=0.011  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHHHcCCCCeEEeecCC-CCCCCcceEEEEEcCC-CCCCCCCCEEEEEEEeCCCCCCCCCeeeecc
Q 031408            8 RGRLTEERKAWRKNHPHGFVAKPETK-DGSVNLMIWECIIPGK-TGTDWEGGYFPLTLYFSEDYPSKPPKCKFPQ   80 (160)
Q Consensus         8 ~~Rl~~E~~~l~~~~~~~~~~~~~~~-~~~~~~~~w~~~i~Gp-~~tpy~gg~f~~~i~fp~~YP~~pP~v~f~t   80 (160)
                      ..+-..|+..|..--+..+....... ..........+.+... .+.......+.+.|.||++||..+|.+.+..
T Consensus        12 ~E~Q~~EleaL~SIY~dd~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~i~L~~~lp~~YP~~~P~i~~~~   86 (137)
T d1ukxa_          12 SQRQDHELQALEAIYGSDFQDLRPDARGRVREPPEINLVLYPQGLAGEEVYVQVELRVKCPPTYPDVVPEIDLKN   86 (137)
T ss_dssp             HHHHHHHHHHHHHHTSSSEEECCCCCSSSCCCCCCEEEEECCTTSCSSSCSCEEEEEECCCTTTTSSCCCCEEEE
T ss_pred             HHHHHHHHHHHHHHcCCceEEecccccccccCCCeEEEEEeccCCCCccceEEEEEEEECCCCCCcccceEEEec
Confidence            45667788888765554454322111 0001112334444421 1222344568999999999999999988754

>d2dawa1 d.20.1.3 (A:8-148) RWD domain-containing protein 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: RWD domain-containing protein 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.12  E-value=0.11  Score=33.59  Aligned_cols=67  Identities=12%  Similarity=0.096  Sum_probs=41.7

Q ss_pred             CEEEEEEEeCCCCCCCCCeeeeccCcccccccCCCceeecCCCCCCCCCCcCCHHHHHHHHHHhhcCCCCCCccCHHHHH
Q 031408           57 GYFPLTLYFSEDYPSKPPKCKFPQGFFHPNVYPSGTVCLSILNEDNGWRPAITVKQILVGIQDLLDQPNPADPAQTDGYQ  136 (160)
Q Consensus        57 g~f~~~i~fp~~YP~~pP~v~f~t~i~Hpnv~~~G~icl~~l~~~~~W~p~~~i~~vl~~i~~ll~~p~~~~p~n~~a~~  136 (160)
                      -.+.+.+.+|++||..+|.|...+                      .|-+......+...+......-....+.=-+...
T Consensus        68 ~~i~L~~~lp~~YP~~~P~i~~~~----------------------~~l~~~~~~~l~~~l~~~~~e~~~Ge~mif~lv~  125 (141)
T d2dawa1          68 VKIDLQVTMPHSYPYLALQLFGRS----------------------SELDRHQQLLLNKGLTSYIGTFDPGELCVCAAIQ  125 (141)
T ss_dssp             EEEEEEEEECSSTTSSCCEEEEEC----------------------SSSCHHHHHHHHHHHHHHHTTSCTTSCSHHHHHH
T ss_pred             ceEEEEEEeCCCCCCCCCCceeec----------------------cccCHHHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence            457888999999999999987542                      2444445666666666666443333444445555


Q ss_pred             HHhhCHHHH
Q 031408          137 LFIQDPAEY  145 (160)
Q Consensus       137 ~~~~~~~~f  145 (160)
                      ..+++-..|
T Consensus       126 ~lqe~~~~~  134 (141)
T d2dawa1         126 WLQDNSASY  134 (141)
T ss_dssp             HHHHTTHHH
T ss_pred             HHHHHHHHH
Confidence            555554444

>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: UBC-like
superfamily: UBC-like
family: RWD domain
domain: Uncharacterized protein C21orf6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.06  E-value=0.068  Score=34.54  Aligned_cols=24  Identities=21%  Similarity=0.350  Sum_probs=20.3

Q ss_pred             CCEEEEEEEeCCCCCCCCCeeeec
Q 031408           56 GGYFPLTLYFSEDYPSKPPKCKFP   79 (160)
Q Consensus        56 gg~f~~~i~fp~~YP~~pP~v~f~   79 (160)
                      .....+.+.+|.+||..+|.|...
T Consensus        65 ~~~l~L~~~lP~~YP~~~P~i~l~   88 (140)
T d2daxa1          65 MAMFSLACILPFKYPAVLPEITVR   88 (140)
T ss_dssp             EEEEEEEEEECSSTTSSCCCCEEE
T ss_pred             CceEEEEEEecCcCCCcCCceecc
Confidence            456889999999999999998764