Citrus Sinensis ID: 031421

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160
Protein Sequence
MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcHHHccccccccHHHHHHHHHcccccccHHHHHHHHHHHcccEEEEEcccccEEEEEcccccccccEEEEEEcccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHcccEEEEEcccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHcccccHHHHHHHHHHHccccccccHHHHHHHHHHcccEEEEEEccccEEEEEccccccccccEEEEEEccccEccEcccccccccccccccEccc
Coil and Loop (DISEMBL)
MSDASLDHQRLLQRLNVYglyevkvsgdgncqfralsdqmykspeyhKHVRKEVVKQLKDCRSmyegyvpmkYKRYYKNMakvgewgdhVTLQAAADKFAAKICLLTSfrdtcfieimpqhqapkRELWLSFWSEVHYnslydirdapvpkkprkkhwlf
Flexible Loop (DISEMBL)
MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSlydirdapvpkkprkkhwlf
Low Complexity Region (SEG)
MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Disordered region (IsUnstruct)
*********RLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRD**************
Disordered Region (DISOPRED)
*S*ASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIM***QAPKRELWLSFWSEVHYNSLY***************WL*
Disordered Region (DISEMBL)
MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPV***********
Disordered Region (DISPRO)
***ASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRK****F
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	160	2.2.26 [Sep-21-2011]
Q54P70	766	OTU domain-containing pro	yes	no	0.893	0.186	0.370	2e-19
P22856	867	Putative ubiquitin thioes	N/A	no	0.806	0.148	0.283	3e-07
Q96G74	571	OTU domain-containing pro	yes	no	0.762	0.213	0.261	1e-06
Q9CUB6	454	OTU domain-containing pro	yes	no	0.768	0.270	0.25	1e-06
Q9D8C3	1166	UDP-N-acetylglucosamine t	no	no	0.562	0.077	0.277	2e-06
B2RRE7	1107	OTU domain-containing pro	no	no	0.5	0.072	0.312	4e-06
Q5VV17	481	OTU domain-containing pro	no	no	0.768	0.255	0.25	5e-06
Q08BW0	560	OTU domain-containing pro	no	no	0.8	0.228	0.270	5e-06
P10383	853	Protein ovarian tumor loc	no	no	0.806	0.151	0.234	6e-06
Q01804	1113	OTU domain-containing pro	no	no	0.8	0.115	0.244	6e-06

>sp|Q54P70|Y4757_DICDI OTU domain-containing protein DDB_G0284757 OS=Dictyostelium discoideum GN=DDB_G0284757 PE=4 SV=2

 Score = 94.4 bits (233), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 57/154 (37%), Positives = 85/154 (55%), Gaps = 11/154 (7%)

Query: 3   DASLDHQRLLQRLNVYGLYEVK-VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVK----- 56
           +  +  QRL +RL +Y L   K + GDGNCQ  ALSDQ+Y    + + VRK +V      
Sbjct: 613 EVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKN 672

Query: 57  ---QLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF--RD 111
              QL +  ++ +      +  Y  +M+K G WGDH+TL AAA+ F +KI +++S   + 
Sbjct: 673 KDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQS 732

Query: 112 TCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR 145
             FIEI+P      + L LS ++E HY SL  +R
Sbjct: 733 NFFIEIIPSKILNDKVLLLSHYAEFHYGSLCPLR 766

Dictyostelium discoideum (taxid: 44689)
EC: 3EC: .EC: 1EC: .EC: 2EC: .EC: -

>sp|P22856|VL96_IRV1 Putative ubiquitin thioesterase L96 OS=Tipula iridescent virus GN=L96 PE=3 SV=1

 Score = 54.3 bits (129), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 42/148 (28%), Positives = 72/148 (48%), Gaps = 19/148 (12%)

Query: 19  GLYEVKVSGDGNCQFRAL--SDQMYKSPEY-HKHVRKEVVKQLKDCRSMYEGYV------ 69
           G   + V GDGNC FRA+  S ++ ++ +Y H+ +R +VV  L   +   E Y+      
Sbjct: 605 GYKVIPVKGDGNCLFRAVGKSLRLNQNIKYSHEDLRAQVVTYLTSHKEFLEPYLEYVTES 664

Query: 70  ----PMKY----KRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 121
               P +Y    +RY KN++K G WGD + L+  ++    K  LL    +T   +++  +
Sbjct: 665 GDTTPQEYAKNVERYIKNISKPGTWGDFICLRVLSEILKVKFNLL--ILNTRNFQVISNN 722

Query: 122 QAPKRELWLSFWSEVHYNSLYDIRDAPV 149
              K  + L F  + HY +L  +   P+
Sbjct: 723 DTFKPLIPLGFIDDYHYTALTPLYAEPI 750

Hydrolase that can remove conjugated ubiquitin from proteins and may therefore play an important regulatory role at the level of protein turnover by preventing degradation (By similarity). May be involved in TIV genomic DNA packaging in a manner related to the Gag polyproteins of the mammalian viruses.

Tipula (taxid: 41043)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q96G74|OTUD5_HUMAN OTU domain-containing protein 5 OS=Homo sapiens GN=OTUD5 PE=1 SV=1

 Score = 52.4 bits (124), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)

Query: 28  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 87
           DG C FRA++DQ+Y   + H+ VRK  +  L      +  YV   +  Y     K    G
Sbjct: 221 DGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 280

Query: 88  DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 143
           +H+ +QA A+ +   + +      T  +E +      HQ     + +S+   +HYNS+ +
Sbjct: 281 NHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 340

Query: 144 IRDAPV 149
              A +
Sbjct: 341 PNKATI 346

Deubiquitinating enzyme that functions as negative regulator of the innate immune system. Acts via TRAF3 deubiquitination and subsequent suppression of type I interferon (IFN) production. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|Q9CUB6|OTUD1_MOUSE OTU domain-containing protein 1 OS=Mus musculus GN=Otud1 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 21  YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNM 80
           Y   +  DGNC +RA+S  +Y     H+ +R++ V  + D    +   +      +    
Sbjct: 283 YRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIAA 342

Query: 81  AKVGEWGDHVTLQAAADKFAAKICLLTSFR-DTCFIEIMPQHQAPKREL----WLSFWSE 135
           A+ G W  +  L A        I L T  R ++  +  M  +  P+  L    WLS+ S 
Sbjct: 343 AQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLSWLSN 402

Query: 136 VHYNSLYD 143
            HY++++D
Sbjct: 403 GHYDAVFD 410

Mus musculus (taxid: 10090)

>sp|Q9D8C3|ALG13_MOUSE UDP-N-acetylglucosamine transferase subunit ALG13 homolog OS=Mus musculus GN=Alg13 PE=2 SV=2

 Score = 51.2 bits (121), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 49/90 (54%)

Query: 5   SLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSM 64
           SL+   + + L   GL+   V+ D +C FRA+S+Q++ S  +H  +R+  V  +K+ +  
Sbjct: 210 SLNEASMDEYLGSLGLFRKVVAKDASCLFRAISEQLFHSQIHHLQIRRACVSYMKENQQA 269

Query: 65  YEGYVPMKYKRYYKNMAKVGEWGDHVTLQA 94
           +E YV   +++Y + +    E    + L+A
Sbjct: 270 FESYVEGSFEKYLERLGDPKESAGQLELKA 299

Isoform 2 may be involved in protein N-glycosylation, second step of the dolichol-linked oligosaccharide pathway (By. similarity).

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 4

EC: .

EC: 1

EC: .

EC: 1

EC: 4

EC: 1

>sp|B2RRE7|OTUD4_MOUSE OTU domain-containing protein 4 OS=Mus musculus GN=Otud4 PE=1 SV=1

 Score = 50.8 bits (120), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/80 (31%), Positives = 42/80 (52%)

Query: 15  LNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK 74
           L   GLY   V+ DG+C FRA+++Q+  S   H  VR   ++ L++ R  +E ++   ++
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIRYLRENREKFEAFIEGSFE 88

Query: 75  RYYKNMAKVGEWGDHVTLQA 94
            Y K +    EW   V + A
Sbjct: 89  EYLKRLENPQEWVGQVEISA 108

Mus musculus (taxid: 10090)

>sp|Q5VV17|OTUD1_HUMAN OTU domain-containing protein 1 OS=Homo sapiens GN=OTUD1 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 32/128 (25%), Positives = 56/128 (43%), Gaps = 5/128 (3%)

Query: 21  YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNM 80
           Y   +  DGNC +RA+S  +Y     H+ +R++ V  + D    +   +      +    
Sbjct: 310 YRFHIIPDGNCLYRAVSKTVYGDQSLHRELREQTVHYIADHLDHFSPLIEGDVGEFIIAA 369

Query: 81  AKVGEWGDHVTLQAAADKFAAKICLLTSFR-DTCFIEIMPQHQAPKREL----WLSFWSE 135
           A+ G W  +  L A        I L T  R ++  +  M  +  P+  L    WLS+ S 
Sbjct: 370 AQDGAWAGYPELLAMGQMLNVNIHLTTGGRLESPTVSTMIHYLGPEDSLRPSIWLSWLSN 429

Query: 136 VHYNSLYD 143
            HY++++D
Sbjct: 430 GHYDAVFD 437

Homo sapiens (taxid: 9606)

>sp|Q08BW0|OTU5A_DANRE OTU domain-containing protein 5-A OS=Danio rerio GN=otud5a PE=2 SV=1

 Score = 50.1 bits (118), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 5/133 (3%)

Query: 19  GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYK 78
           G    K+  DG C FRA++DQ+Y   + H+ VRK  +  L      +  YV   +  Y  
Sbjct: 210 GFVIKKMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYIN 269

Query: 79  NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--TCFIEIMPQHQAPKRELWLSFWSEV 136
              K    G+H+ +QA A+ +   + +  S  +    F  I   HQ     + +S+   +
Sbjct: 270 RKRKNNCHGNHIEMQAMAEMYNRPVEVYQSGTEPINTFHGI---HQNNDEPIRVSYHRNI 326

Query: 137 HYNSLYDIRDAPV 149
           HYNS+ +   A +
Sbjct: 327 HYNSVVNPNKATI 339

Deubiquitinating enzyme that may function as negative regulator of the innate immune system. Has peptidase activity towards 'Lys-48'- and 'Lys-63'-linked polyubiquitin chains. Can also cleave 'Lys-11'-linked ubiquitin chains (in vitro).

Danio rerio (taxid: 7955)

EC: 3

EC: .

EC: 4

EC: .

EC: 1

EC: 9

EC: .

EC: 1

EC: 2

>sp|P10383|OTU_DROME Protein ovarian tumor locus OS=Drosophila melanogaster GN=otu PE=2 SV=2

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 62/132 (46%), Gaps = 3/132 (2%)

Query: 13  QRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMK 72
           Q L   GLY    + D +  FR +++QMY +   H  +R E V+ +   R ++E  +P  
Sbjct: 22  QYLESRGLYRKHTARDASSLFRVIAEQMYDTQMLHYEIRLECVRFMTLKRRIFEKEIPGD 81

Query: 73  YKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSF 132
           +  Y ++M+K   +G    L+A +  +   + L   +     +    ++        + F
Sbjct: 82  FDSYMQDMSKPKTYGTMTELRAMSCLYRRNVILYEPYNMGTSVVFNRRY---AENFRVFF 138

Query: 133 WSEVHYNSLYDI 144
            +E H++S+YD+
Sbjct: 139 NNENHFDSVYDV 150

Essential for female fertility; germ cell division and differentiation.

Drosophila melanogaster (taxid: 7227)

>sp|Q01804|OTUD4_HUMAN OTU domain-containing protein 4 OS=Homo sapiens GN=OTUD4 PE=1 SV=3

 Score = 50.1 bits (118), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 32/131 (24%), Positives = 59/131 (45%), Gaps = 3/131 (2%)

Query: 15  LNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK 74
           L   GLY   V+ DG+C FRA+++Q+  S   H  VR   +  L++ R  +E ++   ++
Sbjct: 29  LRKLGLYRKLVAKDGSCLFRAVAEQVLHSQSRHVEVRMACIHYLRENREKFEAFIEGSFE 88

Query: 75  RYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWS 134
            Y K +    EW   V + A +  +     +   +R+               ++ L F +
Sbjct: 89  EYLKRLENPQEWVGQVEISALSLMYRKDFII---YREPNVSPSQVTENNFPEKVLLCFSN 145

Query: 135 EVHYNSLYDIR 145
             HY+ +Y I+
Sbjct: 146 GNHYDIVYPIK 156

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
225451683	226	PREDICTED: OTU domain-containing protein	1.0	0.707	0.893	4e-82
296082232	262	unnamed protein product [Vitis vinifera]	1.0	0.610	0.893	6e-82
224128706	219	predicted protein [Populus trichocarpa]	1.0	0.730	0.887	3e-80
449455768	226	PREDICTED: OTU domain-containing protein	0.993	0.703	0.867	9e-79
388497542	228	unknown [Lotus japonicus]	1.0	0.701	0.837	9e-79
297832724	219	predicted protein [Arabidopsis lyrata su	1.0	0.730	0.837	8e-78
15232843	219	cysteine proteinase-like protein [Arabid	1.0	0.730	0.837	4e-77
222628798	228	hypothetical protein OsJ_14667 [Oryza sa	0.993	0.697	0.823	2e-75
218194790	228	hypothetical protein OsI_15751 [Oryza sa	0.993	0.697	0.817	3e-75
326525421	227	predicted protein [Hordeum vulgare subsp	0.993	0.700	0.811	2e-74

>gi|225451683|ref|XP_002278321.1| PREDICTED: OTU domain-containing protein DDB_G0284757 [Vitis vinifera]

 Score =  308 bits (790), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 143/160 (89%), Positives = 154/160 (96%)

Query: 1   MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
           +SDASLDHQRL QRLNVY LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKE+VKQLKD
Sbjct: 67  LSDASLDHQRLQQRLNVYRLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEIVKQLKD 126

Query: 61  CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
            RS+YEGYVPMKYKRYYK MAK GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ
Sbjct: 127 YRSLYEGYVPMKYKRYYKKMAKSGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQ 186

Query: 121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           +QAPKRELWLSFWSEVHYNSLY+I+DAP+ +KPRKKHWLF
Sbjct: 187 YQAPKRELWLSFWSEVHYNSLYEIKDAPIRQKPRKKHWLF 226

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296082232|emb|CBI21237.3| unnamed protein product [Vitis vinifera]

 Score =  308 bits (788), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 143/160 (89%), Positives = 154/160 (96%)

Query: 1   MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
           +SDASLDHQRL QRLNVY LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKE+VKQLKD
Sbjct: 103 LSDASLDHQRLQQRLNVYRLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEIVKQLKD 162

Query: 61  CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
            RS+YEGYVPMKYKRYYK MAK GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ
Sbjct: 163 YRSLYEGYVPMKYKRYYKKMAKSGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQ 222

Query: 121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           +QAPKRELWLSFWSEVHYNSLY+I+DAP+ +KPRKKHWLF
Sbjct: 223 YQAPKRELWLSFWSEVHYNSLYEIKDAPIRQKPRKKHWLF 262

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128706|ref|XP_002320400.1| predicted protein [Populus trichocarpa] gi|222861173|gb|EEE98715.1| predicted protein [Populus trichocarpa]

 Score =  302 bits (774), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 142/160 (88%), Positives = 154/160 (96%)

Query: 1   MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
           +SDASLDHQRLLQRLNVYGL EVKVSGDGNCQFRALS+QM+KSPE+HKHVRK+VVKQLK+
Sbjct: 60  LSDASLDHQRLLQRLNVYGLCEVKVSGDGNCQFRALSEQMFKSPEHHKHVRKDVVKQLKE 119

Query: 61  CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
            RS+YEG+VPMKYKRY K MAK GEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ
Sbjct: 120 HRSLYEGHVPMKYKRYCKKMAKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 179

Query: 121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           +Q PKRELWLSFWSEVHYNSLY+IRDAPVP+KP+KKHWLF
Sbjct: 180 YQPPKRELWLSFWSEVHYNSLYEIRDAPVPQKPKKKHWLF 219

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455768|ref|XP_004145623.1| PREDICTED: OTU domain-containing protein DDB_G0284757-like [Cucumis sativus]

 Score =  297 bits (761), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 138/159 (86%), Positives = 150/159 (94%)

Query: 2   SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 61
           SDASL++ RLLQRL+VYGL+EVKVSGDGNCQFRALSDQMY+SPEYHKHVRK+VVKQLKD 
Sbjct: 68  SDASLEYHRLLQRLSVYGLHEVKVSGDGNCQFRALSDQMYRSPEYHKHVRKDVVKQLKDH 127

Query: 62  RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 121
           RS+YEGYVPMKY RYYK MAK GEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEI+PQ 
Sbjct: 128 RSLYEGYVPMKYSRYYKKMAKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIVPQS 187

Query: 122 QAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           Q PKRELWLSFWSEVHYNSLY+I+D PV +KPR+KHWLF
Sbjct: 188 QTPKRELWLSFWSEVHYNSLYEIKDVPVQEKPRRKHWLF 226

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497542|gb|AFK36837.1| unknown [Lotus japonicus]

 Score =  297 bits (761), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 134/160 (83%), Positives = 153/160 (95%)

Query: 1   MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
           +SDAS+DHQRLLQRLN+YGL EV+VSGDGNCQFRALSDQ+Y+SPE+HKHVRKE+V+QLKD
Sbjct: 69  ISDASMDHQRLLQRLNIYGLREVRVSGDGNCQFRALSDQLYRSPEHHKHVRKEIVRQLKD 128

Query: 61  CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
            RS+YE YVPMKYKRYYK MAK+GEWGDHVTLQAA+DKFAAKICLLTSFRDTCFIEIMP 
Sbjct: 129 HRSLYECYVPMKYKRYYKKMAKLGEWGDHVTLQAASDKFAAKICLLTSFRDTCFIEIMPL 188

Query: 121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           +QAP+RE+WLSFWSEVHYNSLY++RDAP+  KP+KKHWLF
Sbjct: 189 YQAPQREIWLSFWSEVHYNSLYEVRDAPIQHKPKKKHWLF 228

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297832724|ref|XP_002884244.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297330084|gb|EFH60503.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  294 bits (753), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 134/160 (83%), Positives = 150/160 (93%)

Query: 1   MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
           ++DA+LDHQRLLQRLNVYGL E+KVSGDGNCQFRA+SDQ+Y+SPEYHK VR+EVVKQLKD
Sbjct: 60  LNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRAVSDQLYRSPEYHKQVRREVVKQLKD 119

Query: 61  CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
           CRSMYE YVPMKYKRYYK M K+GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ
Sbjct: 120 CRSMYESYVPMKYKRYYKRMGKLGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQ 179

Query: 121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           +QAPKRELWLSFWSEVHYNSLYDI+  PV  K ++KHWLF
Sbjct: 180 YQAPKRELWLSFWSEVHYNSLYDIQAVPVQHKAKRKHWLF 219

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232843|ref|NP_186856.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|6513925|gb|AAF14829.1|AC011664_11 unknown protein [Arabidopsis thaliana] gi|45773792|gb|AAS76700.1| At3g02070 [Arabidopsis thaliana] gi|46402444|gb|AAS92324.1| At3g02070 [Arabidopsis thaliana] gi|222424391|dbj|BAH20151.1| AT3G02070 [Arabidopsis thaliana] gi|332640238|gb|AEE73759.1| cysteine proteinase-like protein [Arabidopsis thaliana] gi|407078859|gb|AFS88961.1| OTU-containing deubiquitinating enzyme OTU12 [Arabidopsis thaliana]

 Score =  292 bits (747), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 134/160 (83%), Positives = 149/160 (93%)

Query: 1   MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
           ++DA+LDHQRLLQRLNVYGL E+KVSGDGNCQFRALSDQ+Y+SPEYHK VR+EVVKQLK+
Sbjct: 60  LNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKE 119

Query: 61  CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
           CRSMYE YVPMKYKRYYK M K GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ
Sbjct: 120 CRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQ 179

Query: 121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           +QAPK  LWLSFWSEVHYNSLYDI+ APV  KP++KHWLF
Sbjct: 180 YQAPKGVLWLSFWSEVHYNSLYDIQAAPVQHKPKRKHWLF 219

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222628798|gb|EEE60930.1| hypothetical protein OsJ_14667 [Oryza sativa Japonica Group]

 Score =  286 bits (732), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 131/159 (82%), Positives = 144/159 (90%)

Query: 2   SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 61
           SDA++DH RLL RLNVYGLYEV+VSGDGNCQFRALSDQ+Y+SP+YHKHVRKE+VKQLK C
Sbjct: 69  SDATMDHHRLLDRLNVYGLYEVRVSGDGNCQFRALSDQLYRSPDYHKHVRKEIVKQLKAC 128

Query: 62  RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 121
            S+YEGYVPMKYK Y K M K GEWGDHVTLQAAADKFAAKICLLTSFRDTCF+EI+PQ+
Sbjct: 129 NSLYEGYVPMKYKHYCKKMKKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFVEIVPQY 188

Query: 122 QAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           QAP+RE+WLSFWSEVHYNSLYD RD P   KPRKKHWL 
Sbjct: 189 QAPQREIWLSFWSEVHYNSLYDARDLPSKYKPRKKHWLL 227

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218194790|gb|EEC77217.1| hypothetical protein OsI_15751 [Oryza sativa Indica Group]

 Score =  285 bits (730), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 130/159 (81%), Positives = 144/159 (90%)

Query: 2   SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 61
           SDA++DH RLL RLNVYGLYEV+VSGDGNCQFRALSDQ+Y+SP+YHKHVRKE+VKQLK C
Sbjct: 69  SDATMDHHRLLDRLNVYGLYEVRVSGDGNCQFRALSDQLYRSPDYHKHVRKEIVKQLKAC 128

Query: 62  RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 121
            S+YEGYVPMKYK Y K M K GEWGDHVTLQAAADKFAAKICLLTSFRDTCF+EI+PQ+
Sbjct: 129 NSLYEGYVPMKYKHYCKKMKKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFVEIVPQY 188

Query: 122 QAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           QAP+RE+WLSFWSE+HYNSLYD RD P   KPRKKHWL 
Sbjct: 189 QAPQREIWLSFWSEIHYNSLYDARDLPSKYKPRKKHWLL 227

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326525421|dbj|BAK07975.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  283 bits (724), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 129/159 (81%), Positives = 143/159 (89%)

Query: 2   SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 61
           SDA++DH RL  RLN YGL+EV+VSGDGNCQFRALSDQ+Y+SPEYHKHVRKE+VKQLK C
Sbjct: 69  SDATMDHHRLHDRLNAYGLFEVRVSGDGNCQFRALSDQLYRSPEYHKHVRKEIVKQLKAC 128

Query: 62  RSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQH 121
            S+YEG+VPMKYK Y K M K GEWGDHVTLQAAADKFAAKICLLTSFRDTCF+EI+PQ+
Sbjct: 129 NSLYEGHVPMKYKHYCKKMKKSGEWGDHVTLQAAADKFAAKICLLTSFRDTCFVEIVPQY 188

Query: 122 QAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
           QAP+RELWLSFWSE+HYNSLYD RD P   KPRKKHWLF
Sbjct: 189 QAPQRELWLSFWSEIHYNSLYDARDLPSKYKPRKKHWLF 227

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	160
TAIR|locus:2078648	219	AT3G02070 [Arabidopsis thalian	1.0	0.730	0.837	1.9e-74
TAIR|locus:2091633	245	AT3G22260 [Arabidopsis thalian	1.0	0.653	0.646	1.4e-55
TAIR|locus:2146673	345	AT5G04250 [Arabidopsis thalian	0.962	0.446	0.593	1.2e-49
TAIR|locus:2142659	356	AT5G03330 [Arabidopsis thalian	0.975	0.438	0.557	2.3e-46
DICTYBASE|DDB_G0284757	766	DDB_G0284757 "OTU domain conta	0.893	0.186	0.370	3.3e-18
GENEDB_PFALCIPARUM|PF10_0308	938	PF10_0308 "OTU-like cysteine p	0.737	0.125	0.341	1.4e-13
UNIPROTKB|Q8IJ91	938	PF10_0308 "OTU-like cysteine p	0.737	0.125	0.341	1.4e-13
DICTYBASE|DDB_G0267906	438	DDB_G0267906 "OTU domain conta	0.856	0.312	0.280	2.7e-12
TAIR|locus:2155588	375	AT5G67170 [Arabidopsis thalian	0.906	0.386	0.286	1.1e-11
TAIR|locus:2056133	189	AT2G39320 [Arabidopsis thalian	0.512	0.433	0.321	5.9e-09

TAIR|locus:2078648 AT3G02070 [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 134/160 (83%), Positives = 149/160 (93%)

Query:     1 MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
             ++DA+LDHQRLLQRLNVYGL E+KVSGDGNCQFRALSDQ+Y+SPEYHK VR+EVVKQLK+
Sbjct:    60 LNDATLDHQRLLQRLNVYGLCELKVSGDGNCQFRALSDQLYRSPEYHKQVRREVVKQLKE 119

Query:    61 CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
             CRSMYE YVPMKYKRYYK M K GEWGDH+TLQAAAD+FAAKICLLTSFRDTCFIEI+PQ
Sbjct:   120 CRSMYESYVPMKYKRYYKKMGKFGEWGDHITLQAAADRFAAKICLLTSFRDTCFIEIIPQ 179

Query:   121 HQAPKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHWLF 160
             +QAPK  LWLSFWSEVHYNSLYDI+ APV  KP++KHWLF
Sbjct:   180 YQAPKGVLWLSFWSEVHYNSLYDIQAAPVQHKPKRKHWLF 219

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2091633 AT3G22260 [Arabidopsis thaliana (taxid:3702)]

 Score = 573 (206.8 bits), Expect = 1.4e-55, P = 1.4e-55
 Identities = 106/164 (64%), Positives = 131/164 (79%)

Query:     1 MSDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKD 60
             ++DA+LDH+ L  RL  YGL E+++ GDGNCQFRAL+DQ++++ +YHKHVRK VVKQLK 
Sbjct:    82 INDATLDHELLSGRLATYGLAELQMEGDGNCQFRALADQLFRNADYHKHVRKHVVKQLKQ 141

Query:    61 CRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ 120
              R +YE YVPMKY+ Y + M K GEWGDHVTLQAAAD+F AKICL+TSFRD  +IEI+P 
Sbjct:   142 QRKLYEEYVPMKYRHYTRKMKKHGEWGDHVTLQAAADRFEAKICLVTSFRDQSYIEILPH 201

Query:   121 HQAPKRELWLSFWSEVHYNSLY--DIRDAP-VP-KKPRKKHWLF 160
             ++ P RE WLSFWSEVHYNSLY   +   P VP +KPR+KHWLF
Sbjct:   202 NKNPLREAWLSFWSEVHYNSLYANGVLALPDVPTRKPRRKHWLF 245

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2146673 AT5G04250 [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
 Identities = 92/155 (59%), Positives = 119/155 (76%)

Query:     7 DHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE 66
             DH+RL QRL +YGL E K+ GDGNCQFR+LSDQ+Y+SPE+H  VR++VV QL   R +YE
Sbjct:   191 DHERLFQRLQLYGLVENKIEGDGNCQFRSLSDQLYRSPEHHNFVREQVVNQLAYNREIYE 250

Query:    67 GYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKR 126
             GYVPM Y  Y K M + GEWGDHVTLQAAAD F  ++ ++TSF+DTC+IEI+P  Q   R
Sbjct:   251 GYVPMAYNDYLKAMKRNGEWGDHVTLQAAADLFGVRMFVITSFKDTCYIEILPHFQKSNR 310

Query:   127 ELWLSFWSEVHYNSLYDIRDAPVPK-KPRKKHWLF 160
              + LSFW+EVHYNS+Y   + P+P+ K +KK+W+F
Sbjct:   311 LICLSFWAEVHYNSIYPEGELPIPEGKKKKKYWVF 345

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

GO:0009611 "response to wounding" evidence=RCA

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0010286 "heat acclimation" evidence=RCA

TAIR|locus:2142659 AT5G03330 [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 87/156 (55%), Positives = 115/156 (73%)

Query:     3 DASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCR 62
             +A  DH+RL  RL ++   EVKV GDGNCQFRAL+DQ+YK+ + HKHVR+++VKQLK   
Sbjct:   196 EAVSDHERLRNRLEMFDFTEVKVPGDGNCQFRALADQLYKTADRHKHVRRQIVKQLKSRP 255

Query:    63 SMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQ 122
               Y+GYVPM +  Y + M++ GEWGDHVTLQAAAD +  KI +LTSF+DTC+IEI+P  Q
Sbjct:   256 DSYQGYVPMDFSDYLRKMSRSGEWGDHVTLQAAADAYRVKIVVLTSFKDTCYIEILPTSQ 315

Query:   123 APKRELWLSFWSEVHYNSLYDIRDAPVPKKPRKKHW 158
               K  ++LSFW+EVHYN++Y  RD    +  RK+ W
Sbjct:   316 ESKGVIFLSFWAEVHYNAIYLNRDTSETELQRKRKW 351

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

DICTYBASE|DDB_G0284757 DDB_G0284757 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 231 (86.4 bits), Expect = 3.3e-18, P = 3.3e-18
 Identities = 57/154 (37%), Positives = 84/154 (54%)

Query:     3 DASLDHQRLLQRLNVYGLYEVK-VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDC 61
             +  +  QRL +RL +Y L   K + GDGNCQ  ALSDQ+Y    + + VRK +V  L+  
Sbjct:   613 EVQIAQQRLNERLELYMLKNSKEIPGDGNCQMHALSDQLYGDLSHSQEVRKTIVDWLRKN 672

Query:    62 RSMY--EGYVPMKYKR------YYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSF--RD 111
             +      G    ++        Y  +M+K G WGDH+TL AAA+ F +KI +++S   + 
Sbjct:   673 KDFQLPNGATICQFVNTNNWDDYCNDMSKNGNWGDHLTLLAAAEHFGSKISIISSVESQS 732

Query:   112 TCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR 145
               FIEI+P      + L LS ++E HY SL  +R
Sbjct:   733 NFFIEIIPSKILNDKVLLLSHYAEFHYGSLCPLR 766

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0016787 "hydrolase activity" evidence=IEA

GO:0008234 "cysteine-type peptidase activity" evidence=IEA

GO:0008233 "peptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

GENEDB_PFALCIPARUM|PF10_0308 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 42/123 (34%), Positives = 66/123 (53%)

Query:    21 YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK 78
             Y   +  DGNC FRA+SDQ+Y   E +K +RK+VV+ L     +Y+ ++     YK Y +
Sbjct:    51 YIKSIRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIE 110

Query:    79 NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHY 138
              ++  G WG  + LQA  + +  K+ +L    + C +EI   H    + L L + S  HY
Sbjct:   111 RISLDGTWGGQLELQAVGEIY--KVNILIYQENGCILEIK-NHSDDNKCLQLHYASSEHY 167

Query:   139 NSL 141
             NS+
Sbjct:   168 NSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q8IJ91 PF10_0308 "OTU-like cysteine protease, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 189 (71.6 bits), Expect = 1.4e-13, P = 1.4e-13
 Identities = 42/123 (34%), Positives = 66/123 (53%)

Query:    21 YEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK 78
             Y   +  DGNC FRA+SDQ+Y   E +K +RK+VV+ L     +Y+ ++     YK Y +
Sbjct:    51 YIKSIRTDGNCLFRAVSDQLYNHEENYKEIRKKVVEHLLKNEELYKNFIEYDESYKSYIE 110

Query:    79 NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHY 138
              ++  G WG  + LQA  + +  K+ +L    + C +EI   H    + L L + S  HY
Sbjct:   111 RISLDGTWGGQLELQAVGEIY--KVNILIYQENGCILEIK-NHSDDNKCLQLHYASSEHY 167

Query:   139 NSL 141
             NS+
Sbjct:   168 NSV 170

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

DICTYBASE|DDB_G0267906 DDB_G0267906 "OTU domain containin protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 172 (65.6 bits), Expect = 2.7e-12, P = 2.7e-12
 Identities = 41/146 (28%), Positives = 76/146 (52%)

Query:    13 QRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMK 72
             Q+L  +G     V+GDGNC FR+++DQ+  +P  H+  R+ + K ++  + M+  ++  +
Sbjct:    57 QQLEPFGFIIKDVAGDGNCLFRSIADQLQDAPNEHRKYREAICKYIEKNKDMFAPFIDDE 116

Query:    73 ----YKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRE- 127
                 ++ Y + M +   WG HV +QAA+   A  + +     D    EI+  H  P++  
Sbjct:   117 EFESFEEYIQEMREDATWGGHVEIQAAS--LAYNVNITIHQMDQPRWEIV-NHFPPEKNK 173

Query:   128 -LWLSFWSEVHYNSLYDIRDAPVPKK 152
              + LS+ ++ HYNS+     +  P K
Sbjct:   174 TIHLSYHNDEHYNSVRPANQSLYPTK 199

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

TAIR|locus:2155588 AT5G67170 [Arabidopsis thaliana (taxid:3702)]

 Score = 165 (63.1 bits), Expect = 1.1e-11, P = 1.1e-11
 Identities = 43/150 (28%), Positives = 74/150 (49%)

Query:     7 DHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE 66
             D  +   +L+  GL  ++V+ DGNC FRA++DQ+  + + H   R  +V  +   R M+E
Sbjct:    24 DLSQFRAQLDALGLKIIQVTADGNCFFRAIADQLEGNEDEHNKYRNMIVLYIVKNREMFE 83

Query:    67 GYVP--MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAP 124
              ++   + ++ Y K M   G W  ++ LQAA+    + IC+  +     +I      +  
Sbjct:    84 PFIEDDVPFEDYCKTMDDDGTWAGNMELQAASLVTRSNICIHRNMSPRWYIRNFEDTRT- 142

Query:   125 KRELWLSFWSEVHYNSLYDIRDA-PVPKKP 153
              R + LS+    HYNS+    DA   P +P
Sbjct:   143 -RMIHLSYHDGEHYNSVRSKEDACGGPARP 171

GO:0005634 "nucleus" evidence=ISM

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

TAIR|locus:2056133 AT2G39320 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 28/87 (32%), Positives = 50/87 (57%)

Query:    57 QLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE 116
             Q  DC  +    V  +  +   +++   +WGD VTL+ AAD +  KI L+TS +   F+E
Sbjct:    19 QNSDCHEL----VRQEIVKQNMSLSTNSQWGDEVTLRVAADVYQVKIILITSIKLIPFME 74

Query:   117 IMPQHQA-PKRELWLSFWSEVHYNSLY 142
              +P+ Q  P + + +S+ + +H+NS+Y
Sbjct:    75 FLPKSQKEPDKVIHMSYLAGIHFNSIY 101

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008234 "cysteine-type peptidase activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037995001 SubName- Full=Chromosome chr14 scaffold_9, whole genome shotgun sequence; (226 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	160
pfam02338	123	pfam02338, OTU, OTU-like cysteine protease	1e-28

>gnl|CDD|216981 pfam02338, OTU, OTU-like cysteine protease

 Score =  101 bits (254), Expect = 1e-28
 Identities = 37/122 (30%), Positives = 57/122 (46%), Gaps = 10/122 (8%)

Query: 27  GDGNCQFRALSDQMY--KSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVG 84
           GDGNC F A+SDQ+      E H  +R+ VV+ L++ R  +E ++      YYK ++K G
Sbjct: 2   GDGNCLFHAVSDQLGDAGRQELHDELREAVVEYLRENREDFEKFLEEDENEYYKWISKDG 61

Query: 85  EWGDHVTLQAAADKFAAKICLL--TSFRDTCFIEIMP--QHQAPKRELWLSFWS----EV 136
            WG ++ + A A      I +      R T +I+I         K  + LS+        
Sbjct: 62  AWGGNIEIFALAHILRVPIIVYKLQGGRITVYIKIYGTYLPLNKKPVIRLSYLGLEYTGN 121

Query: 137 HY 138
           HY
Sbjct: 122 HY 123

This family is comprised of a group of predicted cysteine proteases, homologous to the Ovarian Tumour (OTU) gene in Drosophila. Members include proteins from eukaryotes, viruses and pathogenic bacterium. The conserved cysteine and histidine, and possibly the aspartate, represent the catalytic residues in this putative group of proteases. Length = 123

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	160
PF02338	121	OTU: OTU-like cysteine protease; InterPro: IPR0033	99.95
KOG2606	302	consensus OTU (ovarian tumor)-like cysteine protea	99.95
KOG2605	371	consensus OTU (ovarian tumor)-like cysteine protea	99.77
KOG3288	307	consensus OTU-like cysteine protease [Signal trans	99.77
PF10275	244	Peptidase_C65: Peptidase C65 Otubain; InterPro: IP	99.71
KOG3991	256	consensus Uncharacterized conserved protein [Funct	99.66
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	99.01
COG5539	306	Predicted cysteine protease (OTU family) [Posttran	98.97
PF05415	104	Peptidase_C36: Beet necrotic yellow vein furovirus	97.11
PF05412	108	Peptidase_C33: Equine arterivirus Nsp2-type cystei	95.95
PF05381	104	Peptidase_C21: Tymovirus endopeptidase; InterPro:	95.77
PRK09784	417	hypothetical protein; Provisional	85.72

>PF02338 OTU: OTU-like cysteine protease; InterPro: IPR003323 This is a group of proteins found primarily in viruses, eukaryotes and in the pathogenic bacterium Chlamydia pneumoniae

Probab=99.95  E-value=3.9e-28  Score=168.96  Aligned_cols=107  Identities=35%  Similarity=0.608  Sum_probs=90.1

Q ss_pred             CCCCchHHHHHHHHHh----cCcchHHHHHHHHHHHHh-hccccccccccchHHHHHHhhcCCceeCcHHHHHHHHHHhC
Q 031421           26 SGDGNCQFRALSDQMY----KSPEYHKHVRKEVVKQLK-DCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFA  100 (160)
Q Consensus        26 ~gDGnClF~ais~~l~----~~~~~~~~lR~~~v~~i~-~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~A~a~~~~  100 (160)
                      ||||||||||||++++    +++..|.+||+.++++|+ +|++.|.+|+..+      +|+++++||+++||+|+|++|+
T Consensus         1 pgDGnClF~Avs~~l~~~~~~~~~~~~~lR~~~~~~l~~~~~~~~~~~~~~~------~~~~~~~Wg~~~el~a~a~~~~   74 (121)
T PF02338_consen    1 PGDGNCLFRAVSDQLYGDGGGSEDNHQELRKAVVDYLRDKNRDKFEEFLEGD------KMSKPGTWGGEIELQALANVLN   74 (121)
T ss_dssp             -SSTTHHHHHHHHHHCTT-SSSTTTHHHHHHHHHHHHHTHTTTHHHHHHHHH------HHTSTTSHEEHHHHHHHHHHHT
T ss_pred             CCCccHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchhhhhhhhh------hhccccccCcHHHHHHHHHHhC
Confidence            7999999999999999    999999999999999999 9999998887655      8999999999999999999999


Q ss_pred             CeEEEEecCCCce--eEEecC--CCCCCCCeEEEEeCC-----CCcc
Q 031421          101 AKICLLTSFRDTC--FIEIMP--QHQAPKRELWLSFWS-----EVHY  138 (160)
Q Consensus       101 v~I~V~~~~~~~~--~~~~~p--~~~~~~~~I~L~~~~-----~~HY  138 (160)
                      ++|+|++......  .+.+.+  ......++|.|+|..     ++||
T Consensus        75 ~~I~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~l~~~~~Hy  121 (121)
T PF02338_consen   75 RPIIVYSSSDGDNVVFIKFTGKYPPLESPPPICLCYHGHLYYTGNHY  121 (121)
T ss_dssp             SEEEEECETTTBEEEEEEESCEESTTTTTTSEEEEEETEEEEETTEE
T ss_pred             CeEEEEEcCCCCccceeeecCccccCCCCCeEEEEEcCCccCCCCCC
Confidence            9999998754332  233332  112447899999987     8998

In viruses they are annotated as replicase or RNA-dependent RNA polymerase. The eukaryotic sequences are related to the Ovarian Tumour (OTU) gene in Drosophila, cezanne deubiquitinating peptidase and tumor necrosis factor, alpha-induced protein 3 (MEROPS peptidase family C64) and otubain 1 and otubain 2 (MEROPS peptidase family C65). None of these proteins has a known biochemical function but low sequence similarity with the polyprotein regions of arteriviruses, and conserved cysteine and histidine, and possibly the aspartate, residues suggests that those not yet recognised as peptidases could possess cysteine protease activity [].; PDB: 2VFJ_C 3DKB_F 3PHW_A 3PHU_B 3PHX_A 3BY4_A 3C0R_C 3PRM_C 3PRP_C 3ZRH_A ....

>KOG2606 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.7e-27  Score=182.41  Aligned_cols=142  Identities=19%  Similarity=0.379  Sum_probs=123.8

Q ss_pred             ChHHHHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCc---chHHHHHHHHHHHHhhcccccccccc--------
Q 031421            2 SDASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSP---EYHKHVRKEVVKQLKDCRSMYEGYVP--------   70 (160)
Q Consensus         2 ~~~~~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~---~~~~~lR~~~v~~i~~n~~~f~~~i~--------   70 (160)
                      ++..|+.+.|.+-|...||...+||.||+|+|+||++||....   -+.+.||..+.+||++|.++|.+|+.        
T Consensus       141 ~~k~~E~~k~~~il~~~~l~~~~Ip~DG~ClY~aI~hQL~~~~~~~~~v~kLR~~~a~Ymr~H~~df~pf~~~eet~d~~  220 (302)
T KOG2606|consen  141 DAKSMEKEKLAQILEERGLKMFDIPADGHCLYAAISHQLKLRSGKLLSVQKLREETADYMREHVEDFLPFLLDEETGDSL  220 (302)
T ss_pred             chhhhHHHHHHHHHHhccCccccCCCCchhhHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHhhhHhcCccccccC
Confidence            4678999999999999999999999999999999999997553   36899999999999999999999873        


Q ss_pred             --chHHHHHHhhcCCceeCcHHHHHHHHHHhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCC-----CCcceeeec
Q 031421           71 --MKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWS-----EVHYNSLYD  143 (160)
Q Consensus        71 --~~~~~yl~~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~-----~~HY~~l~~  143 (160)
                        ++|+.||+.++.++.|||++||.|+|.+|++||.||..+.  +...|+++..+ .++|.|+|++     |.||+++.+
T Consensus       221 ~~~~f~~Yc~eI~~t~~WGgelEL~AlShvL~~PI~Vy~~~~--p~~~~geey~k-d~pL~lvY~rH~y~LGeHYNS~~~  297 (302)
T KOG2606|consen  221 GPEDFDKYCREIRNTAAWGGELELKALSHVLQVPIEVYQADG--PILEYGEEYGK-DKPLILVYHRHAYGLGEHYNSVTP  297 (302)
T ss_pred             CHHHHHHHHHHhhhhccccchHHHHHHHHhhccCeEEeecCC--CceeechhhCC-CCCeeeehHHhHHHHHhhhccccc
Confidence              2599999999999999999999999999999999999875  44677765543 5899999864     489999877


Q ss_pred             CCC
Q 031421          144 IRD  146 (160)
Q Consensus       144 ~~~  146 (160)
                      .+.
T Consensus       298 ~~n  300 (302)
T KOG2606|consen  298 LKN  300 (302)
T ss_pred             ccc
Confidence            653

>KOG2605 consensus OTU (ovarian tumor)-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=5.4e-19  Score=142.76  Aligned_cols=157  Identities=38%  Similarity=0.607  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhhcC
Q 031421            3 DASLDHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAK   82 (160)
Q Consensus         3 ~~~~~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~   82 (160)
                      .++-+.+++.+.+..+|+...+|.+||||+|||+|++++++.+.|..+|+.+++++..+++.|..|+++++.+|++++..
T Consensus       201 ~~~s~~~~~~~~~~~~g~e~~Kv~edGsC~fra~aDQvy~d~e~~~~~~~~~~dq~~~e~~~~~~~vt~~~~~y~k~kr~  280 (371)
T KOG2605|consen  201 EPQSAHERSAKRKKHFGFEYKKVVEDGSCLFRALADQVYGDDEQHDHNRRECVDQLKKERDFYEDYVTEDFTSYIKRKRA  280 (371)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhcccCCchhhhccHHHhhcCHHHHHHHHHHHHHHHhhcccccccccccchhhccccccc
Confidence            45677888889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CceeCcHHHHHHHHH--HhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeecC---CCC-CCCCCcccc
Q 031421           83 VGEWGDHVTLQAAAD--KFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDI---RDA-PVPKKPRKK  156 (160)
Q Consensus        83 ~g~wg~~~ei~A~a~--~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~---~~~-~~~~~~~~~  156 (160)
                      ++.||+++|++|+|.  -+..+..+++..+.+.++...|....+...+.+.+....||+..+..   .+. ..-.|.+.+
T Consensus       281 ~~~~gnhie~Qa~a~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~n~~~~~h~~~~~~~~~~~~s~~~~~~~~r~  360 (371)
T KOG2605|consen  281 DGEPGNHIEQQAAADIYEEIEKPLNITSFKDTCYIQTPPAIEESVKMEKYNFWVEVHYNTARHSGKSADSATLEEKTKRK  360 (371)
T ss_pred             CCCCcchHHHhhhhhhhhhccccceeecccccceeccCcccccchhhhhhcccchhhhhhcccccccccccchhhccCCC
Confidence            999999999999996  44555555554444555555444434445566666556899999873   222 344455566


Q ss_pred             ccc
Q 031421          157 HWL  159 (160)
Q Consensus       157 ~~~  159 (160)
                      +|.
T Consensus       361 ~~~  363 (371)
T KOG2605|consen  361 SLR  363 (371)
T ss_pred             chh
Confidence            664

>KOG3288 consensus OTU-like cysteine protease [Signal transduction mechanisms; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=8.1e-19  Score=133.05  Aligned_cols=123  Identities=19%  Similarity=0.366  Sum_probs=101.0

Q ss_pred             cEEeeeCCCCchHHHHHHHHHhcCcc-hHHHHHHHHHHHHhhcccccccc-ccchHHHHHHhhcCCceeCcHHHHHHHHH
Q 031421           20 LYEVKVSGDGNCQFRALSDQMYKSPE-YHKHVRKEVVKQLKDCRSMYEGY-VPMKYKRYYKNMAKVGEWGDHVTLQAAAD   97 (160)
Q Consensus        20 l~~~~v~gDGnClF~ais~~l~~~~~-~~~~lR~~~v~~i~~n~~~f~~~-i~~~~~~yl~~m~~~g~wg~~~ei~A~a~   97 (160)
                      +.++.||.|++|||+||++.+.+.-. ...++|+.+.+.+.+||+.|..- ++..-.+||..+.++..|||-+||..+|+
T Consensus       110 l~~~vvp~DNSCLF~ai~yv~~k~~~~~~~elR~iiA~~Vasnp~~yn~AiLgK~n~eYc~WI~k~dsWGGaIElsILS~  189 (307)
T KOG3288|consen  110 LSRRVVPDDNSCLFTAIAYVIFKQVSNRPYELREIIAQEVASNPDKYNDAILGKPNKEYCAWILKMDSWGGAIELSILSD  189 (307)
T ss_pred             eEEEeccCCcchhhhhhhhhhcCccCCCcHHHHHHHHHHHhcChhhhhHHHhCCCcHHHHHHHccccccCceEEeeeehh
Confidence            45677899999999999999987643 33699999999999999999864 46678999999999999999999999999


Q ss_pred             HhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeecCC
Q 031421           98 KFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR  145 (160)
Q Consensus        98 ~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~  145 (160)
                      .|++.|++++.+.  .-+.-..++......+.|.| +|-|||++....
T Consensus       190 ~ygveI~vvDiqt--~rid~fged~~~~~rv~lly-dGIHYD~l~m~~  234 (307)
T KOG3288|consen  190 YYGVEICVVDIQT--VRIDRFGEDKNFDNRVLLLY-DGIHYDPLAMNE  234 (307)
T ss_pred             hhceeEEEEecce--eeehhcCCCCCCCceEEEEe-cccccChhhhcc
Confidence            9999999999763  22322333444567799999 799999996654

>PF10275 Peptidase_C65: Peptidase C65 Otubain; InterPro: IPR019400 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.71  E-value=1.3e-16  Score=123.57  Aligned_cols=94  Identities=21%  Similarity=0.324  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHhhcccccccccc----chHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC---c--eeEEec
Q 031421           49 HVRKEVVKQLKDCRSMYEGYVP----MKYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD---T--CFIEIM  118 (160)
Q Consensus        49 ~lR~~~v~~i~~n~~~f~~~i~----~~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~---~--~~~~~~  118 (160)
                      .+|-.+..||+.|++.|.+|++    .++++||. .....+.-++++.|.|+|++|+++|.|+..+++   .  ....+.
T Consensus       141 flRLlts~~l~~~~d~y~~fi~~~~~~tve~~C~~~Vep~~~Ead~v~i~ALa~aL~v~i~v~yld~~~~~~~~~~~~~~  220 (244)
T PF10275_consen  141 FLRLLTSAYLKSNSDEYEPFIDGLEYLTVEEFCSQEVEPMGKEADHVQIIALAQALGVPIRVEYLDRSVEGDEVNRHEFP  220 (244)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSSTT--S-HHHHHHHHTSSTT--B-HHHHHHHHHHHT--EEEEESSSSGCSTTSEEEEES
T ss_pred             HHHHHHHHHHHhhHHHHhhhhcccccCCHHHHHHhhcccccccchhHHHHHHHHHhCCeEEEEEecCCCCCCccccccCC
Confidence            5666788899999999999997    57999997 567778889999999999999999999987653   1  123343


Q ss_pred             CCCCCCCCeEEEEeCCCCcceeeec
Q 031421          119 PQHQAPKRELWLSFWSEVHYNSLYD  143 (160)
Q Consensus       119 p~~~~~~~~I~L~~~~~~HY~~l~~  143 (160)
                      |.+....+.|+|+| .++|||.++|
T Consensus       221 ~~~~~~~~~i~LLy-rpgHYdIly~  244 (244)
T PF10275_consen  221 PDNESQEPQITLLY-RPGHYDILYP  244 (244)
T ss_dssp             -SSTTSS-SEEEEE-ETBEEEEEEE
T ss_pred             CccCCCCCEEEEEE-cCCccccccC
Confidence            33334578999999 7899999985

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This family of proteins is a highly specific ubiquitin iso-peptidase that removes ubiquitin from proteins. The modification of cellular proteins by ubiquitin (Ub) is an important event that underlies protein stability and function in eukaryotes, as it is a dynamic and reversible process. Otubain carries several key conserved domains: (i) the OTU (ovarian tumour domain) in which there is an active cysteine protease triad (ii) a nuclear localisation signal, (iii) a Ub interaction motif (UIM)-like motif phi-xx-A-xxxs-xx-Ac (where phi indicates an aromatic amino acid, x indicates any amino acid and Ac indicates an acidic amino acid), (iv) a Ub-associated (UBA)-like domain and (v) the LxxLL motif. ; PDB: 4DDG_C 3VON_O 2ZFY_A 4DHZ_A 4DDI_C 1TFF_A 4DHJ_I 4DHI_B.

>KOG3991 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.66  E-value=5.1e-16  Score=116.21  Aligned_cols=94  Identities=18%  Similarity=0.284  Sum_probs=74.7

Q ss_pred             HHHHHHHHHHHhhccccccccccc--hHHHHHHh-hcCCceeCcHHHHHHHHHHhCCeEEEEecCCCce---eEEecCCC
Q 031421           48 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTC---FIEIMPQH  121 (160)
Q Consensus        48 ~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~~-m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~---~~~~~p~~  121 (160)
                      +.+|-.+..++++|+|.|++|+++  ++.+||+. ......-+|+++|.|+|+.+++.|.|...++...   .-...|+ 
T Consensus       157 ~ylRLvtS~~ik~~adfy~pFI~e~~tV~~fC~~eVEPm~kesdhi~I~ALs~Al~i~irVey~dr~~~~~~~hH~fpe-  235 (256)
T KOG3991|consen  157 MYLRLVTSGFIKSNADFYQPFIDEGMTVKAFCTQEVEPMYKESDHIHITALSQALGIRIRVEYVDRGSGDTVNHHDFPE-  235 (256)
T ss_pred             HHHHHHHHHHHhhChhhhhccCCCCCcHHHHHHhhcchhhhccCceeHHHHHhhhCceEEEEEecCCCCCCCCCCcCcc-
Confidence            457778889999999999999975  88999985 4555677899999999999999999988664322   1122343 


Q ss_pred             CCCCCeEEEEeCCCCcceeeecC
Q 031421          122 QAPKRELWLSFWSEVHYNSLYDI  144 (160)
Q Consensus       122 ~~~~~~I~L~~~~~~HY~~l~~~  144 (160)
                       ...+.|+|+| ..+|||.++++
T Consensus       236 -~s~P~I~LLY-rpGHYdilY~~  256 (256)
T KOG3991|consen  236 -ASAPEIYLLY-RPGHYDILYKK  256 (256)
T ss_pred             -ccCceEEEEe-cCCccccccCC
Confidence             3478899999 89999999864

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=6.3e-11  Score=91.90  Aligned_cols=131  Identities=12%  Similarity=0.033  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhhCCcEEeeeCCCCchHHHHHHHHHhcCc-----chHHHHHHHHHHHHhhcccccccccc-------chHH
Q 031421            7 DHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSP-----EYHKHVRKEVVKQLKDCRSMYEGYVP-------MKYK   74 (160)
Q Consensus         7 ~~~~l~~~l~~~gl~~~~v~gDGnClF~ais~~l~~~~-----~~~~~lR~~~v~~i~~n~~~f~~~i~-------~~~~   74 (160)
                      +...+++-+...+++-.++.|||+|.|-+||++|.-.-     +..+..|-.-..|...+...|.++.=       -.|+
T Consensus       158 ~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~~Vdv~~~~~dr~~~~~~~q~~~i~f~g~hfD~~t~~m~~~d  237 (306)
T COG5539         158 AILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIHVVDVDKDSEDRYNSHPYVQRISILFTGIHFDEETLAMVLWD  237 (306)
T ss_pred             hhcCcchHHHHHhhhccccCCCceEEEeEeccccceeeeeeecchhHHhhccCChhhhhhhhhhcccccchhhhhcchHH
Confidence            44556667777788888999999999999999997542     12344554444555555556655431       2699


Q ss_pred             HHHHhhcCCceeCcHHHHHHHHHHhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeC----CCCcceee
Q 031421           75 RYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFW----SEVHYNSL  141 (160)
Q Consensus        75 ~yl~~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~----~~~HY~~l  141 (160)
                      +|++.+..+..||..+|++++|..|++++.++...+  +.+.+.+.+.+.  ...+.|.    .-+||+.+
T Consensus       238 t~~ne~~~~a~~g~~~ei~qLas~lk~~~~~~nT~~--~~ik~n~c~~~~--~~e~~~~~Ha~a~GH~n~~  304 (306)
T COG5539         238 TYVNEVLFDASDGITIEIQQLASLLKNPHYYTNTAS--PSIKCNICGTGF--VGEKDYYAHALATGHYNFG  304 (306)
T ss_pred             HHHhhhcccccccchHHHHHHHHHhcCceEEeecCC--ceEEeecccccc--chhhHHHHHHHhhcCcccc
Confidence            999999999999999999999999999999998764  567787765422  2222221    23599876

>COG5539 Predicted cysteine protease (OTU family) [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=1.9e-10  Score=89.29  Aligned_cols=110  Identities=13%  Similarity=0.182  Sum_probs=91.0

Q ss_pred             CCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccc-hHHHHHHhhcCCceeC-cHHHHHHHHHHhCCeEE
Q 031421           27 GDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPM-KYKRYYKNMAKVGEWG-DHVTLQAAADKFAAKIC  104 (160)
Q Consensus        27 gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~-~~~~yl~~m~~~g~wg-~~~ei~A~a~~~~v~I~  104 (160)
                      .|..|+|++.+..++.-  .-.++|..+...+.+|||.|.+.+.+ +.-.|+.++.++..|| |.+|+.++++.|++.|+
T Consensus       119 ~d~srl~q~~~~~l~~a--sv~~lrE~vs~Ev~snPDl~n~~i~~~~~i~y~~~i~k~d~~~dG~ieia~iS~~l~v~i~  196 (306)
T COG5539         119 DDNSRLFQAERYSLRDA--SVAKLREVVSLEVLSNPDLYNPAILEIDVIAYATWIVKPDSQGDGCIEIAIISDQLPVRIH  196 (306)
T ss_pred             CchHHHHHHHHhhhhhh--hHHHHHHHHHHHHhhCccccchhhcCcchHHHHHhhhccccCCCceEEEeEeccccceeee
Confidence            46789999999998762  45899999999999999999988754 7789999999999999 99999999999999999


Q ss_pred             EEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeee
Q 031421          105 LLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLY  142 (160)
Q Consensus       105 V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~  142 (160)
                      ++..+.+. ...+.+...  ...+.+.| .+.|||...
T Consensus       197 ~Vdv~~~~-~dr~~~~~~--~q~~~i~f-~g~hfD~~t  230 (306)
T COG5539         197 VVDVDKDS-EDRYNSHPY--VQRISILF-TGIHFDEET  230 (306)
T ss_pred             eeecchhH-HhhccCChh--hhhhhhhh-cccccchhh
Confidence            99987532 234444322  34577888 799999875

>PF05415 Peptidase_C36: Beet necrotic yellow vein furovirus-type papain-like endopeptidase; InterPro: IPR008746 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.11  E-value=0.0018  Score=42.13  Aligned_cols=97  Identities=16%  Similarity=0.165  Sum_probs=58.5

Q ss_pred             eCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhh--cCCceeCcHHHHHHHHHHhCCe
Q 031421           25 VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNM--AKVGEWGDHVTLQAAADKFAAK  102 (160)
Q Consensus        25 v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m--~~~g~wg~~~ei~A~a~~~~v~  102 (160)
                      +..|+||+.-|||..|+-+-   ..|...+..    |.        ..++.|+...  ..+.+|-+-   ..+|+.+++.
T Consensus         3 ~sR~NNCLVVAis~~L~~T~---e~l~~~M~A----n~--------~~i~~y~~W~r~~~~STW~DC---~mFA~~LkVs   64 (104)
T PF05415_consen    3 ASRPNNCLVVAISECLGVTL---EKLDNLMQA----NV--------STIKKYHTWLRKKRPSTWDDC---RMFADALKVS   64 (104)
T ss_pred             ccCCCCeEeehHHHHhcchH---HHHHHHHHh----hH--------HHHHHHHHHHhcCCCCcHHHH---HHHHHhheeE
Confidence            46799999999999998876   445443332    21        2357777754  457888543   3489999999


Q ss_pred             EEEEe-cCCCceeEEecCCCCCCCCeEEEEeC-CCCccee
Q 031421          103 ICLLT-SFRDTCFIEIMPQHQAPKRELWLSFW-SEVHYNS  140 (160)
Q Consensus       103 I~V~~-~~~~~~~~~~~p~~~~~~~~I~L~~~-~~~HY~~  140 (160)
                      |.+-- ++.+.. +.+...+..+.-..++..- +.+||.+
T Consensus        65 m~vkV~~~~~~~-l~~~~d~~~s~v~~~~~~Ke~dGHF~a  103 (104)
T PF05415_consen   65 MQVKVLSDKPYD-LLYFVDGAVSVVTLHLEGKESDGHFIA  103 (104)
T ss_pred             EEEEEcCCCCce-eeEeecCccceehhhhhccccCCceec
Confidence            88743 333333 3333333323334444432 3478854

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases correspond to MEROPS peptidase family C36 (clan CA). The type example is beet necrotic yellow vein furovirus-type papain-like endopeptidase (beet necrotic yellow vein virus), which is involved in processing the viral polyprotein.

>PF05412 Peptidase_C33: Equine arterivirus Nsp2-type cysteine proteinase; InterPro: IPR008743 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.95  E-value=0.0062  Score=40.92  Aligned_cols=83  Identities=12%  Similarity=0.214  Sum_probs=49.8

Q ss_pred             eCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHH-HHHHhhcCCceeCcHHHHHHHHHHhCCeE
Q 031421           25 VSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYK-RYYKNMAKVGEWGDHVTLQAAADKFAAKI  103 (160)
Q Consensus        25 v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~-~yl~~m~~~g~wg~~~ei~A~a~~~~v~I  103 (160)
                      -|+||+|.||+||..++.               |          +++.|. .|-+.......|.++..+.-+-..++.|+
T Consensus         4 PP~DG~CG~H~i~aI~n~---------------m----------~~~~~t~~l~~~~r~~d~W~~dedl~~~iq~l~lPa   58 (108)
T PF05412_consen    4 PPGDGSCGWHCIAAIMNH---------------M----------MGGEFTTPLPQRNRPSDDWADDEDLYQVIQSLRLPA   58 (108)
T ss_pred             CCCCCchHHHHHHHHHHH---------------h----------hccCCCccccccCCChHHccChHHHHHHHHHccCce
Confidence            589999999999988764               1          111111 12233456788999888776666667766


Q ss_pred             EEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeecCC
Q 031421          104 CLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR  145 (160)
Q Consensus       104 ~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~  145 (160)
                      .+.-..-            . ...-|+.-..+.|++.-+.++
T Consensus        59 t~~~~~~------------C-p~ArYv~~l~~qHW~V~~~~g   87 (108)
T PF05412_consen   59 TLDRNGA------------C-PHARYVLKLDGQHWEVSVRKG   87 (108)
T ss_pred             eccCCCC------------C-CCCEEEEEecCceEEEEEcCC
Confidence            4432211            1 123444444778887766554

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases corresponds to MEROPS peptidase family C33 (clan CA). The type example is equine arteritis virus Nsp2-type cysteine proteinase, which is involved in viral polyprotein processing [].; GO: 0016032 viral reproduction, 0019082 viral protein processing

>PF05381 Peptidase_C21: Tymovirus endopeptidase; InterPro: IPR008043 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.77  E-value=0.13  Score=34.65  Aligned_cols=91  Identities=12%  Similarity=0.141  Sum_probs=58.7

Q ss_pred             CCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHHHHHHHhCCeEEEEe
Q 031421           28 DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLT  107 (160)
Q Consensus        28 DGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~A~a~~~~v~I~V~~  107 (160)
                      .-|||.-|+|.++.-..   ..|-..+...+   ||.   ++.   ...   ++.-|  -+-..+.|+|-.|+....+.+
T Consensus         2 ~~~CLL~A~s~at~~~~---~~LW~~L~~~l---PDS---lL~---n~e---i~~~G--LSTDhltaLa~~~~~~~~~hs   64 (104)
T PF05381_consen    2 ALDCLLVAISQATSISP---ETLWATLCEIL---PDS---LLD---NPE---IRTLG--LSTDHLTALAYRYHFQCTFHS   64 (104)
T ss_pred             CcceeHHhhhhhhCCCH---HHHHHHHHHhC---chh---hcC---chh---hhhcC--CcHHHHHHHHHHHheEEEEEc
Confidence            35899999999998877   55555555433   111   010   001   11122  245668899999999999999


Q ss_pred             cCCCceeEEecCCCCCCCCeEEEEeCCC--Cccee
Q 031421          108 SFRDTCFIEIMPQHQAPKRELWLSFWSE--VHYNS  140 (160)
Q Consensus       108 ~~~~~~~~~~~p~~~~~~~~I~L~~~~~--~HY~~  140 (160)
                      ..+   .+.|+..+.  ...+.|.|..+  .||.+
T Consensus        65 ~~~---~~~~Gi~~a--s~~~~I~ht~G~p~HFs~   94 (104)
T PF05381_consen   65 DHG---VLHYGIKDA--STVFTITHTPGPPGHFSL   94 (104)
T ss_pred             CCc---eEEeecCCC--ceEEEEEeCCCCCCcccc
Confidence            754   467776544  56788888543  69998

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This entry is found in cysteine peptidases belong to the MEROPS peptidase family C21 (tymovirus endopeptidase family, clan CA). The type example is tymovirus endopeptidase (turnip yellow mosaic virus). The noncapsid protein expressed from ORF-206 of turnip yellow mosaic virus (TYMV) is autocatalytically processed by a papain-like protease, producing N-terminal 150kDa and C-terminal 70kDa proteins.; GO: 0003968 RNA-directed RNA polymerase activity, 0016032 viral reproduction

>PRK09784 hypothetical protein; Provisional

Probab=85.72  E-value=0.49  Score=36.92  Aligned_cols=24  Identities=42%  Similarity=0.688  Sum_probs=21.1

Q ss_pred             hhCCcEEeeeCCCCchHHHHHHHH
Q 031421           16 NVYGLYEVKVSGDGNCQFRALSDQ   39 (160)
Q Consensus        16 ~~~gl~~~~v~gDGnClF~ais~~   39 (160)
                      +.+||+--+|.|||-|+.|||-..
T Consensus       196 ~~~glkyapvdgdgycllrailvl  219 (417)
T PRK09784        196 KTYGLKYAPVDGDGYCLLRAILVL  219 (417)
T ss_pred             hhhCceecccCCCchhHHHHHHHh
Confidence            578999999999999999998544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	160
3tmp_A	184	The Catalytic Domain Of Human Deubiquitinase Duba I		3e-08
3tmo_A	184	The Catalytic Domain Of Human Deubiquitinase Duba L		4e-08
3pfy_A	185	The Catalytic Domain Of Human Otud5 Length = 185		1e-06

>pdb|3TMP|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba In Complex With Ubiquitin Aldehyde Length = 184

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 57/126 (45%), Gaps = 4/126 (3%)
Query: 28  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 87
           DG C FRA++DQ+Y   + H+ VRK  +  L      +  YV   +  Y     K    G
Sbjct: 54  DGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 88  DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 143
           +H+ +QA A+ +   + +      T  +E +      HQ     + +S+   +HYNS+ +
Sbjct: 114 NHIEMQAMAEMYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 173
Query: 144 IRDAPV 149
              A +
Sbjct: 174 PNKATI 179

>pdb|3TMO|A Chain A, The Catalytic Domain Of Human Deubiquitinase Duba Length = 184

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/126 (26%), Positives = 55/126 (43%), Gaps = 4/126 (3%)
Query: 28  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 87
           DG C FRA++DQ+Y   + H+ VRK     L      +  YV   +  Y     K    G
Sbjct: 54  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 113
Query: 88  DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQ----HQAPKRELWLSFWSEVHYNSLYD 143
           +H+  QA A+ +   + +      T  +E +      HQ     + +S+   +HYNS+ +
Sbjct: 114 NHIEXQAXAEXYNRPVEVYQYSTGTSAVEPINTFHGIHQNEDEPIRVSYHRNIHYNSVVN 173
Query: 144 IRDAPV 149
              A +
Sbjct: 174 PNKATI 179

>pdb|3PFY|A Chain A, The Catalytic Domain Of Human Otud5 Length = 185

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 28  DGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWG 87
           DG C FRA++DQ+Y   + H+ VRK     L      +  YV   +  Y     K    G
Sbjct: 67  DGACLFRAVADQVYGDQDXHEVVRKHCXDYLXKNADYFSNYVTEDFTTYINRKRKNNCHG 126
Query: 88  DHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSL 141
           +H+  QA A+ +   + +   +           HQ     + +S+   +HYNS+
Sbjct: 127 NHIEXQAXAEXYNRPVEVY-QYSTEPINTFHGIHQNEDEPIRVSYHRNIHYNSV 179

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	160
3pfy_A	185	OTU domain-containing protein 5; structural genomi	4e-36
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	8e-31
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	1e-30
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	3e-22

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A* Length = 185

 Score =  122 bits (307), Expect = 4e-36
 Identities = 33/141 (23%), Positives = 59/141 (41%), Gaps = 1/141 (0%)

Query: 7   DHQRLLQRLNVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE 66
           +H       +  G    ++  DG C FRA++DQ+Y   + H+ VRK  +  L      + 
Sbjct: 46  EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFS 105

Query: 67  GYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKR 126
            YV   +  Y     K    G+H+ +QA A+ +   + +   +           HQ    
Sbjct: 106 NYVTEDFTTYINRKRKNNCHGNHIEMQAMAEMYNRPVEVY-QYSTEPINTFHGIHQNEDE 164

Query: 127 ELWLSFWSEVHYNSLYDIRDA 147
            + +S+   +HYNS+ +   A
Sbjct: 165 PIRVSYHRNIHYNSVVNPNKA 185

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A Length = 185

 Score =  108 bits (272), Expect = 8e-31
 Identities = 25/147 (17%), Positives = 50/147 (34%), Gaps = 6/147 (4%)

Query: 14  RLNVYGLYEV-KVSGDGNCQFRALSDQMYKSPEYHK-HVRKEVVKQLKDCRSMYE---GY 68
           R N+   +E+ +  GDGNC + ++++    +   H  H  K + +         E     
Sbjct: 24  RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 83

Query: 69  VPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIM-PQHQAPKRE 127
           V +  + Y K M    EWG  +     A +    I + T          +          
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTA 143

Query: 128 LWLSFWSEVHYNSLYDIRDAPVPKKPR 154
           + L    + H+++L  +       +  
Sbjct: 144 VNLLHSGQTHFDALRILPQFETDTREA 170

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200} Length = 219

 Score =  109 bits (272), Expect = 1e-30
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 6/147 (4%)

Query: 14  RLNVYGLYEVK-VSGDGNCQFRALSDQMYKSPEYHK-HVRKEVVKQLKDC---RSMYEGY 68
           R N+   +E+    GDGNC + ++++    +   H  H  K + +               
Sbjct: 24  RFNISDYFEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEARL 83

Query: 69  VPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQA-PKRE 127
           V +  + Y K M    EWG  +     A +    I + T          +          
Sbjct: 84  VGLSLEDYLKRMLSDNEWGSTLEASMLAKEMGITIIIWTVAASDEVEAGIKFGDGDVFTA 143

Query: 128 LWLSFWSEVHYNSLYDIRDAPVPKKPR 154
           + L    + H+++L  +       +  
Sbjct: 144 VNLLHSGQTHFDALRILPQFETDTREA 170

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A Length = 212

 Score = 87.3 bits (216), Expect = 3e-22
 Identities = 29/135 (21%), Positives = 56/135 (41%), Gaps = 6/135 (4%)

Query: 19  GLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY-EGYVPMKYKRYY 77
            L    V  D +C F A++  ++K       +R+ V K++ +    + +  +    K Y 
Sbjct: 19  VLSVHPVLDDNSCLFHAIAYGIFKQDSVRD-LREMVSKEVLNNPVKFNDAILDKPNKDYA 77

Query: 78  KNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVH 137
           + + K+  WG  + +   +D  A  I ++    D   IE   + +     L L  ++ +H
Sbjct: 78  QWILKMESWGGAIEIGIISDALAVAIYVVDI--DAVKIEKFNEDKFDNYILIL--FNGIH 133

Query: 138 YNSLYDIRDAPVPKK 152
           Y+SL       V  K
Sbjct: 134 YDSLTMNEFKTVFNK 148

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	160
3pfy_A	185	OTU domain-containing protein 5; structural genomi	100.0
3by4_A	212	OTU1, ubiquitin thioesterase OTU1; ubiquitin hydro	100.0
3phx_A	185	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	100.0
3phu_A	219	RNA-directed RNA polymerase L; OTU domain, DE-ubiq	100.0
1tff_A	234	Ubiquitin thiolesterase protein OTUB2; hydrolase;	99.91
2zfy_A	234	Ubiquitin thioesterase OTUB1; otubain, structural	99.88
4dhi_B	284	Ubiquitin thioesterase otubain-like; ubiquitin E2	99.87
4ddg_A	399	Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI	99.82
3dkb_A	390	Tumor necrosis factor, alpha-induced protein 3; OT	99.3
3zrh_A	454	Ubiquitin thioesterase zranb1; hydrolase, deubiqui	99.15
4a5u_A	160	RNA replicase polyprotein; transferase-RNA binding	92.33

>3pfy_A OTU domain-containing protein 5; structural genomics, structural genomics consortium, SGC, PE C65 otubain, hydrolase; HET: MSE PG4; 1.70A {Homo sapiens} PDB: 3tmp_A* 3tmo_A*

Probab=100.00  E-value=9.9e-40  Score=241.13  Aligned_cols=137  Identities=23%  Similarity=0.414  Sum_probs=103.1

Q ss_pred             HHHHHHHH-hhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCcee
Q 031421            8 HQRLLQRL-NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEW   86 (160)
Q Consensus         8 ~~~l~~~l-~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~w   86 (160)
                      +..|.++| +++||.++.|||||||||||||+||+++++.|..||+.+++||++|++.|.+|+++++++||++|+++++|
T Consensus        46 e~~~~~~l~~~~gL~~~~I~~DGnCLFrAia~qL~g~~~~h~~LR~~vv~yi~~n~d~f~~Fv~~~~e~Y~~~m~~~~~W  125 (185)
T 3pfy_A           46 EHWFEKALRDKKGFIIKQMKEDGACLFRAVADQVYGDQDMHEVVRKHCMDYLMKNADYFSNYVTEDFTTYINRKRKNNCH  125 (185)
T ss_dssp             HHHHHHHHHHHHCCEEECCCCSTTHHHHHHHHHHHSCGGGHHHHHHHHHHHHHHTHHHHTTCC-----------------
T ss_pred             HHHHHHHHHHHCCcEEEeeCCCCChHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhCCCcc
Confidence            34455555 79999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcHHHHHHHHHHhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeecCC
Q 031421           87 GDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIR  145 (160)
Q Consensus        87 g~~~ei~A~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~  145 (160)
                      ||++||+|+|++|+++|.|++.+. .+...+.+......++|.|+|.+++||++|+..+
T Consensus       126 Gg~iEL~AlS~~~~v~I~V~~~~~-~~i~i~~g~~~~~~~~I~L~Y~~~~HYnSv~~p~  183 (185)
T 3pfy_A          126 GNHIEMQAMAEMYNRPVEVYQYST-EPINTFHGIHQNEDEPIRVSYHRNIHYNSVVNPN  183 (185)
T ss_dssp             CCHHHHHHHHHHHTSCEEEESSCS-SCSEEECTTSCCTTSCEEEEEETTTEEEEEECC-
T ss_pred             chHHHHHHHHHhhCCcEEEEECCC-CCeEEecCccCCCCCEEEEEECCCCCcccccCCC
Confidence            999999999999999999999754 2333343333345789999998899999998654

>3by4_A OTU1, ubiquitin thioesterase OTU1; ubiquitin hydrolase, deubiquitinase, cell cycle, hydrolase; 1.55A {Saccharomyces cerevisiae} PDB: 3c0r_A

Probab=100.00  E-value=4.5e-35  Score=221.03  Aligned_cols=123  Identities=18%  Similarity=0.258  Sum_probs=110.2

Q ss_pred             hhCCcEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhcccccc-ccccchHHHHHHhhcCCceeCcHHHHHH
Q 031421           16 NVYGLYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYE-GYVPMKYKRYYKNMAKVGEWGDHVTLQA   94 (160)
Q Consensus        16 ~~~gl~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~-~~i~~~~~~yl~~m~~~g~wg~~~ei~A   94 (160)
                      ...||.++.|||||||||||||+|| ++++.|..||+.+++||++|++.|. .+++.++++||++|+++++|||++||+|
T Consensus        16 ~~~~l~~~~i~~DGnCLFrAva~qL-~~~~~~~~lR~~vv~yi~~n~d~f~e~~~~~~~e~Y~~~m~~~~~WGg~iEL~A   94 (212)
T 3by4_A           16 GENVLSVHPVLDDNSCLFHAIAYGI-FKQDSVRDLREMVSKEVLNNPVKFNDAILDKPNKDYAQWILKMESWGGAIEIGI   94 (212)
T ss_dssp             CCSEEEEECCCCSTTHHHHHHHHHH-HSSCCSHHHHHHHHHHHHHCTTTTCHHHHTSCHHHHHHHTTSTTSCCCHHHHHH
T ss_pred             CCCCeEEEEeCCCCchHHHHHHHHh-CCchHHHHHHHHHHHHHHHCHHHHhhhhcCCCHHHHHHHhcCCCEEccHHHHHH
Confidence            3457899999999999999999999 8899999999999999999999997 5667899999999999999999999999


Q ss_pred             HHHHhCCeEEEEecCCCceeEEecCCCCCCCCeEEEEeCCCCcceeeec
Q 031421           95 AADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLYD  143 (160)
Q Consensus        95 ~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~  143 (160)
                      +|++|+++|.|++.+. .....|.+..  ..++|+|+|. ++|||+|+.
T Consensus        95 ls~~~~~~I~V~~~~~-~~~~~~~~~~--~~~~I~L~Y~-g~HYdsl~~  139 (212)
T 3by4_A           95 ISDALAVAIYVVDIDA-VKIEKFNEDK--FDNYILILFN-GIHYDSLTM  139 (212)
T ss_dssp             HHHHHTCEEEEEETTT-TEEEEESTTT--CSEEEEEEEC-SSCEEEEEE
T ss_pred             HHHHHCCCEEEEECCC-CCeEEeCCCC--CCCeEEEEEc-CCcceEEec
Confidence            9999999999999764 3556676543  4679999995 899999998

>3phx_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Crimean-congo hemorrhagic fever virus} PDB: 3phw_A 3pt2_A 3pse_A 3prp_A 3prm_A

Probab=100.00  E-value=1.9e-33  Score=207.93  Aligned_cols=127  Identities=17%  Similarity=0.257  Sum_probs=107.0

Q ss_pred             cEEeeeCCCCchHHHHHHHHHhcC-cch-----HHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHH
Q 031421           20 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ   93 (160)
Q Consensus        20 l~~~~v~gDGnClF~ais~~l~~~-~~~-----~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~   93 (160)
                      +.+.+|||||||||||||+||+++ +..     |.+||+.+++||++|++.  .+++.++++||++|+++++|||++||+
T Consensus        31 ~~v~rv~gDGnCLFrAva~qL~~~~~~~~~~~~~~~LR~~~~~yi~~~~~~--~~~~~~~~~Y~~~m~~~~~WGg~iEL~  108 (185)
T 3phx_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEA--RLVGLSLEDYLKRMLSDNEWGSTLEAS  108 (185)
T ss_dssp             EEEECCCSSTTHHHHHHHHHHSTTCCTTTHHHHHHHHHHHHHHHGGGCTTH--HHHCCCHHHHHHHHTSTTCCCBHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChHh--hhcCCCHHHHHHHhhCCCccCcHHHHH
Confidence            778889999999999999999998 555     899999999999999998  356789999999999999999999999


Q ss_pred             HHHHHhCCeEEEEecCCCc---eeEEecCCCCCCCCeEEEEeCCCCcceeeecCCCCCCC
Q 031421           94 AAADKFAAKICLLTSFRDT---CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVP  150 (160)
Q Consensus        94 A~a~~~~v~I~V~~~~~~~---~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~~~~~~  150 (160)
                      |+|++|+++|.|++.+...   ..+.|.++.  ..++|+|+|.+++|||+|++..+-+.+
T Consensus       109 Als~~~~v~I~V~~~d~~~~~~~i~~f~~~~--~~~~I~L~Y~g~~HYdsl~~~~~~~~~  166 (185)
T 3phx_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFETD  166 (185)
T ss_dssp             HHHHHHCCCEEEEEC--CCBCCEEEEESSCC--TTTSEEEEEETTTEEEEEEECGGGC--
T ss_pred             HHHHHHCCcEEEEEecCCCCceEEEEcCCCC--CCCEEEEEECCCcCchhceECCCCCCC
Confidence            9999999999999865433   245666543  268999999766999999998765443

>3phu_A RNA-directed RNA polymerase L; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase; 2.20A {Crimean-congo hemorrhagic fever VIRUSIBAR10200}

Probab=100.00  E-value=7.4e-33  Score=208.98  Aligned_cols=127  Identities=17%  Similarity=0.255  Sum_probs=108.9

Q ss_pred             cEEeeeCCCCchHHHHHHHHHhcC-cch-----HHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHH
Q 031421           20 LYEVKVSGDGNCQFRALSDQMYKS-PEY-----HKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQ   93 (160)
Q Consensus        20 l~~~~v~gDGnClF~ais~~l~~~-~~~-----~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~   93 (160)
                      +.+++|||||||||||||+||+++ +..     |..||+.+++||++|++.+  +++.++++||++|+++++|||++||+
T Consensus        31 ~~V~rvpgDGnCLFrAVs~qL~~~~~~~~~~~~h~~LR~~va~yi~~n~d~~--~~~~~feeY~~~m~~~g~WGG~iEL~  108 (219)
T 3phu_A           31 FEIVRQPGDGNCFYHSIAELTMPNKTDHSYHYIKRLTESAARKYYQEEPEAR--LVGLSLEDYLKRMLSDNEWGSTLEAS  108 (219)
T ss_dssp             EEEECCCCSSCHHHHHHHHHHCTTCCTTTHHHHHHHHHHHHHHHGGGCHHHH--HHCCCHHHHHHHHHSTTCCCCHHHHH
T ss_pred             eEEEccCCCCchHHHHHHHHHhCCCccchhhhHHHHHHHHHHHHHHhChhhh--hcCCCHHHHHHHhcCCCccCCHHHHH
Confidence            778899999999999999999988 455     8999999999999999983  56789999999999999999999999


Q ss_pred             HHHHHhCCeEEEEecCCCc---eeEEecCCCCCCCCeEEEEeCCCCcceeeecCCCCCCC
Q 031421           94 AAADKFAAKICLLTSFRDT---CFIEIMPQHQAPKRELWLSFWSEVHYNSLYDIRDAPVP  150 (160)
Q Consensus        94 A~a~~~~v~I~V~~~~~~~---~~~~~~p~~~~~~~~I~L~~~~~~HY~~l~~~~~~~~~  150 (160)
                      |+|++|+++|+|++.+..+   ..+.|.+..  ..++|+|+|.+++||++|++..+-+.+
T Consensus       109 AlS~~~~v~I~V~~~d~~g~~~~i~~fge~~--~~~~I~L~Y~g~~HYdSL~~~~d~~~~  166 (219)
T 3phu_A          109 MLAKEMGITIIIWTVAASDEVEAGIKFGDGD--VFTAVNLLHSGQTHFDALRILPQFETD  166 (219)
T ss_dssp             HHHHHTTCCEEEEEESSSSBEEEEEEESSCC--TTTSEEEEEETTTEEEEEEECTTTCCS
T ss_pred             HHHHHhCCCEEEEEecCCCCceeEEEecCCC--CCCeEEEEECCCcCchhheECCCCCCC
Confidence            9999999999999866531   345666543  268999999766999999998875443

>1tff_A Ubiquitin thiolesterase protein OTUB2; hydrolase; 2.10A {Homo sapiens} SCOP: d.3.1.11

Probab=99.91  E-value=2.8e-24  Score=164.23  Aligned_cols=96  Identities=13%  Similarity=0.292  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCCceeEE--ecCCCC
Q 031421           48 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIE--IMPQHQ  122 (160)
Q Consensus        48 ~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~~~~--~~p~~~  122 (160)
                      ..+|..+..||++|++.|.+|+++  ++++||+ .+...++|||+++|+|+|+.++++|.|+..++....+.  ..|++ 
T Consensus       133 ~~lR~lta~~i~~~~d~f~pFi~~~~~~~~yC~~~ve~~~~~~~~iei~ALa~aL~v~I~V~~~d~~~~~~~~~~~~~~-  211 (234)
T 1tff_A          133 QFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEA-  211 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCC-
T ss_pred             HHHHHHHHHHHHHCHHHHhhhhcCCCCHHHHHHHHhhhhhcccccHHHHHHHHHhCCCEEEEEcCCCCCccccccCCCC-
Confidence            458999999999999999999975  8999999 78999999999999999999999999999765331111  12332 


Q ss_pred             CCCCeEEEEeCCCCcceeeecCCC
Q 031421          123 APKRELWLSFWSEVHYNSLYDIRD  146 (160)
Q Consensus       123 ~~~~~I~L~~~~~~HY~~l~~~~~  146 (160)
                       ..+.|+|+| .++|||+|++...
T Consensus       212 -~~~~I~LlY-~pgHYdily~~~~  233 (234)
T 1tff_A          212 -ATPSVYLLY-KTSHYNILYAADK  233 (234)
T ss_dssp             -SSCSEEEEE-ETTEEEEEEECCC
T ss_pred             -CCCeEEEEE-CCCCceecccCCC
Confidence             367899999 5789999998753

>2zfy_A Ubiquitin thioesterase OTUB1; otubain, structural genomics, structural genomics consortium, SGC, alternative splicing, hydrolase, immune response; 1.69A {Homo sapiens} PDB: 4ddg_B 4ddi_A

Probab=99.88  E-value=1.8e-22  Score=154.26  Aligned_cols=93  Identities=18%  Similarity=0.292  Sum_probs=76.1

Q ss_pred             HHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCCc---eeEEecCCC
Q 031421           48 KHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRDT---CFIEIMPQH  121 (160)
Q Consensus        48 ~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~---~~~~~~p~~  121 (160)
                      ..+|..+..||++|++.|.+|+++  ++++||+ .+...++|||+++|.|+|++|+++|.|+..++..   ......|++
T Consensus       136 ~~lR~lta~yi~~~~d~f~pFi~~~~~~e~yc~~~ve~~~~~~~~i~i~ALa~al~v~I~V~~~d~~~~~~v~~~~f~~~  215 (234)
T 2zfy_A          136 VYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPEG  215 (234)
T ss_dssp             HHHHHHHHHHHHHTHHHHGGGCCSSCCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-CCSSCCEEEEESTT
T ss_pred             HHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHHhhhHhhcCCHHHHHHHHHHhCCCEEEEEcCCCCCCcccceeCCCC
Confidence            367888899999999999999975  8999997 6899999999999999999999999999866532   111223433


Q ss_pred             CCCCCeEEEEeCCCCcceeeec
Q 031421          122 QAPKRELWLSFWSEVHYNSLYD  143 (160)
Q Consensus       122 ~~~~~~I~L~~~~~~HY~~l~~  143 (160)
                        ..+.|+|+| .++|||+|+|
T Consensus       216 --~~p~I~LlY-~pgHYdiLy~  234 (234)
T 2zfy_A          216 --SEPKVYLLY-RPGHYDILYK  234 (234)
T ss_dssp             --CCCSEEEEE-ETTEEEEEEC
T ss_pred             --CCCeEEEEE-CCCCcccCCC
Confidence              257899999 5789999985

>4dhi_B Ubiquitin thioesterase otubain-like; ubiquitin E2 enzyme fold, ubiquitination, hydrolase-ligase C; 1.80A {Caenorhabditis elegans} PDB: 4dhj_A 4dhz_A

Probab=99.87  E-value=7.4e-22  Score=153.42  Aligned_cols=100  Identities=15%  Similarity=0.219  Sum_probs=80.7

Q ss_pred             HHHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC--c--eeEE-ec
Q 031421           47 HKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD--T--CFIE-IM  118 (160)
Q Consensus        47 ~~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~--~--~~~~-~~  118 (160)
                      ...||..+..||++|++.|.+|+.+  ++++||+ .+...+.|||+++|.|+|++|+++|.|+..++.  .  .... | 
T Consensus       170 v~~LRllts~yi~~~~d~f~pFi~~~~~v~~yC~~eVe~~~~e~d~leI~ALa~aL~v~I~V~ylDrs~g~~v~~h~~f-  248 (284)
T 4dhi_B          170 LMFFRLITSAFLKQNSEEYAPFIDEGMTVAQYCEQEIEPMWKDADHLAINSLIKAAGTRVRIEYMDRTAAPNGGWHYDI-  248 (284)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSCTTCCHHHHHHHHTSSTTCCCCHHHHHHHHHHTTCCEEEEESSGGGCTTSSSEEEE-
T ss_pred             HHHHHHHHHHHHHHCHHHHHhhcCCCCCHHHHHHHhceehhhcccHHHHHHHHHHhCCcEEEEEecCCCCCCCcccccC-
Confidence            3467889999999999999999965  7999999 799999999999999999999999999876532  1  1233 5 


Q ss_pred             CCCCC-CCCeEEEEeCCCCcceeeecCCCCC
Q 031421          119 PQHQA-PKRELWLSFWSEVHYNSLYDIRDAP  148 (160)
Q Consensus       119 p~~~~-~~~~I~L~~~~~~HY~~l~~~~~~~  148 (160)
                      |.+.. ..+.|+|+| .++|||.|++....+
T Consensus       249 p~~~~~~~p~I~LLY-rpgHYDILY~~~p~~  278 (284)
T 4dhi_B          249 PSDDQQIAPEITLLY-RPGHYDVIYKKDSTE  278 (284)
T ss_dssp             SCCCSCCCCSEEEEE-ETTEEEEEEECC---
T ss_pred             CCCCCCCCCEEEEee-cCCCccccccCCCCc
Confidence            75532 347899999 789999999987554

>4ddg_A Ubiquitin-conjugating enzyme E2 D2, ubiquitin THI OTUB1; inhibition, hydrolase-ligase complex; 3.30A {Homo sapiens} PDB: 4ddi_A

Probab=99.82  E-value=2.6e-20  Score=152.22  Aligned_cols=94  Identities=18%  Similarity=0.280  Sum_probs=77.4

Q ss_pred             HHHHHHHHHHHHhhccccccccccc--hHHHHHH-hhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC-c-ee-EEecCC
Q 031421           47 HKHVRKEVVKQLKDCRSMYEGYVPM--KYKRYYK-NMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD-T-CF-IEIMPQ  120 (160)
Q Consensus        47 ~~~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~-~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~-~-~~-~~~~p~  120 (160)
                      ...+|..+..||++|++.|.+|+++  ++++||+ .+...+.|||+++|.|+|+.|+++|.|+..++. . .. ....|.
T Consensus       300 v~~lRllts~~i~~~~d~f~pFi~~~~~v~~yc~~~ve~~~~e~d~l~I~ALa~al~v~I~V~yld~~~~~~v~~~~~~~  379 (399)
T 4ddg_A          300 VVYLRLLTSGYLQRESKFFEHFIEGGRTVKEFCQQEVEPMCKESDHIHIIALAQALSVSIQVEYMDRGEGGTTNPHIFPE  379 (399)
T ss_dssp             HHHHHHHHHHHHHHTHHHHGGGSSSSCCHHHHHHHHTSSTTCCBCHHHHHHHHHHHTCCCEEEECSCCSSSCCCEEETTT
T ss_pred             HHHHHHHHHHHHHHCHHHHhcccCCCCCHHHHHHHhceeHHhhCcHHHHHHHHHHcCCcEEEEEcCCCCCCccceeeCCC
Confidence            3458888999999999999999975  7999999 899999999999999999999999999875442 1 11 122354


Q ss_pred             CCCCCCeEEEEeCCCCcceeeec
Q 031421          121 HQAPKRELWLSFWSEVHYNSLYD  143 (160)
Q Consensus       121 ~~~~~~~I~L~~~~~~HY~~l~~  143 (160)
                      +.  .+.|+|+| .++|||+|++
T Consensus       380 ~~--~~~I~LLY-rPgHYDiLY~  399 (399)
T 4ddg_A          380 GS--EPKVYLLY-RPGHYDILYK  399 (399)
T ss_dssp             TC--CCCCEEEE-ETBEEEEEEC
T ss_pred             CC--CCEEEEEE-cCCccccCCC
Confidence            33  67899999 7899999985

>3dkb_A Tumor necrosis factor, alpha-induced protein 3; OTU domain, DUB domain, apoptosis, cytoplasm, DNA-binding, hydrolase, metal-binding, nucleus; 2.50A {Homo sapiens} PDB: 2vfj_A

Probab=99.30  E-value=4.2e-11  Score=94.88  Aligned_cols=128  Identities=19%  Similarity=0.358  Sum_probs=88.1

Q ss_pred             cEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccc-cc-----------cccc-----------cchHHHH
Q 031421           20 LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRS-MY-----------EGYV-----------PMKYKRY   76 (160)
Q Consensus        20 l~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~-~f-----------~~~i-----------~~~~~~y   76 (160)
                      |....+.||||||.||+|.+++|-.+....+|+.+.+-|..+.. .|           ..|.           ..+|+.-
T Consensus       112 L~pL~t~GDGnCLLHAvSqamWGv~DrdlvLRkaL~~~L~~~~~~~fr~RW~~e~~~~q~~~~~gL~y~e~ew~~EW~~I  191 (390)
T 3dkb_A          112 LVALKTNGDGNCLMHATSQYMWGVQDTDLVLRKALFSTLKETDTRNFKFRWQLESLKSQEFVETGLCYDTRNWNDEWDNL  191 (390)
T ss_dssp             EEEBCCCCSSCHHHHHHHHHHHSSCSTTCHHHHHHHHHHHHSCCHHHHHHHHHHHHCCCSSCC----CCSSCSSHHHHHH
T ss_pred             eEEEEecCCCchHHHHHhHHhcCCCCHhHHHHHHHHHHHHhchHHHHHHHHHHHHHHhhhhHhhcccccHHHHHHHHHHH
Confidence            55677899999999999999999999889999998888876542 11           1222           1245554


Q ss_pred             HHhhcCCc---------eeCcHHHHHHHHHHhCCeEEEEecC--C---Cc-ee--E----EecC----CCCCCCCeEEEE
Q 031421           77 YKNMAKVG---------EWGDHVTLQAAADKFAAKICLLTSF--R---DT-CF--I----EIMP----QHQAPKRELWLS  131 (160)
Q Consensus        77 l~~m~~~g---------~wg~~~ei~A~a~~~~v~I~V~~~~--~---~~-~~--~----~~~p----~~~~~~~~I~L~  131 (160)
                      ++..+.+.         .=-.++.|.++|+++++||+|+...  .   ++ .+  +    .|.|    .......||.|+
T Consensus       192 v~~Asp~~~~~~~~~~y~sLEeiHIFvLAhVLRRPIIV~~d~~lr~~~~Ge~~~Pi~f~GIYLPLlwpp~~C~rsPI~Lg  271 (390)
T 3dkb_A          192 IKMASTDTPMARSGLQYNSLEEIHIFVLCNILRRPIIVISDKMLRSLESGSNFAPLKVGGIYLPLHWPAQECYRYPIVLG  271 (390)
T ss_dssp             HHHTSSCCCSSSSSCSSCCCCHHHHHHHHHHTTSCEEEEECCCCTTCCCC----CCCCCEEECCTTSCTTSSCSSCEEEE
T ss_pred             HHHhCCCCCCCCCcchhhhHHHHHHHHHHHHhcCCEEEEechhhccccCCCccCcCccCceecCCcCCHHHccCCceEEE
Confidence            44333221         1235788999999999999999633  1   11 11  1    2223    333557899999


Q ss_pred             eCCCCcceeeecCCCCC
Q 031421          132 FWSEVHYNSLYDIRDAP  148 (160)
Q Consensus       132 ~~~~~HY~~l~~~~~~~  148 (160)
                      | ..+||.+|....+.+
T Consensus       272 Y-~s~HFsaLV~me~~~  287 (390)
T 3dkb_A          272 Y-DSHHFVPLVTLKDSG  287 (390)
T ss_dssp             E-CSSCEEEEEEBCSSS
T ss_pred             e-ccCceeeeeecccCC
Confidence            9 679999999987543

>3zrh_A Ubiquitin thioesterase zranb1; hydrolase, deubiquitinating enzyme, WNT signaling, ovarian T domain; 2.23A {Homo sapiens}

Probab=99.15  E-value=1.7e-10  Score=92.89  Aligned_cols=128  Identities=13%  Similarity=0.223  Sum_probs=91.8

Q ss_pred             cEEeeeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccc-c---------------ccc--c----chHHHHH
Q 031421           20 LYEVKVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMY-E---------------GYV--P----MKYKRYY   77 (160)
Q Consensus        20 l~~~~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f-~---------------~~i--~----~~~~~yl   77 (160)
                      |......||||||.||+|.++.|-++....||+.+.+-|.+....| .               .|.  +    .+|+.-+
T Consensus       189 L~pL~t~GDGNCLLHAvSqamWGV~DrdlvLRkaL~~~L~~~~~~f~~RW~~~e~~q~q~~gL~y~lde~ewq~EW~~iv  268 (454)
T 3zrh_A          189 LYALWNRTAGDCLLDSVLQATWGIYDKDSVLRKALHDSLHDCSHWFYTRWKDWESWYSQSFGLHFSLREEQWQEDWAFIL  268 (454)
T ss_dssp             EEEBCCCCSSCHHHHHHHHTTTSSCCGGGHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHHH
T ss_pred             eeEeeecCCCccHHHHHHHHhhcccCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHH
Confidence            4566788999999999999999999999999999888887643221 1               121  1    2344445


Q ss_pred             HhhcCCceeCcHHHHHHHHHHhCCeEEEEecCCC----c-e--eE----EecCC----CCCCCCeEEEEeCCCCcceeee
Q 031421           78 KNMAKVGEWGDHVTLQAAADKFAAKICLLTSFRD----T-C--FI----EIMPQ----HQAPKRELWLSFWSEVHYNSLY  142 (160)
Q Consensus        78 ~~m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~----~-~--~~----~~~p~----~~~~~~~I~L~~~~~~HY~~l~  142 (160)
                      +..+.+|.--+++.|.++|+++++||+|+...--    + .  .+    .|.|-    ......||.|+| ..+||.+|.
T Consensus       269 ~~As~Pg~sLEeiHIFvLAhVLRRPIIV~~d~~lrs~~Ge~l~pi~f~GIYLPLlwpp~~C~rsPIvLgY-~~gHFsaLV  347 (454)
T 3zrh_A          269 SLASQPGASLEQTHIFVLAHILRRPIIVYGVKYYKSFRGETLGYTRFQGVYLPLLWEQSFCWKSPIALGY-TRGHFSALV  347 (454)
T ss_dssp             HHTTSTTCCCCHHHHHHHHHHTTSCEEEEECSSCC-----CCCCCCCCEEECCTTSCGGGSCSCCEEEEE-ETTEEEEEE
T ss_pred             HHhcCCcchHHHHHHHHHHHHhcCCeEEeccccccccCCCcCCCcccceeeccCcCCHHHhcCCceEEEe-cccceeeee
Confidence            5456677767889999999999999999985321    1 0  01    23332    224468999999 578999999


Q ss_pred             cCCCCC
Q 031421          143 DIRDAP  148 (160)
Q Consensus       143 ~~~~~~  148 (160)
                      +..+.+
T Consensus       348 ~~~~~~  353 (454)
T 3zrh_A          348 AMENDG  353 (454)
T ss_dssp             EBCCC-
T ss_pred             eccccc
Confidence            987654

>4a5u_A RNA replicase polyprotein; transferase-RNA binding protein complex, cysteine proteinase; 2.00A {Turnip yellow mosaic virus}

Probab=92.33  E-value=1.2  Score=31.35  Aligned_cols=98  Identities=16%  Similarity=0.172  Sum_probs=62.5

Q ss_pred             eeCCCCchHHHHHHHHHhcCcchHHHHHHHHHHHHhhccccccccccchHHHHHHhhcCCceeCcHHHHHHHHHHhCCeE
Q 031421           24 KVSGDGNCQFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKRYYKNMAKVGEWGDHVTLQAAADKFAAKI  103 (160)
Q Consensus        24 ~v~gDGnClF~ais~~l~~~~~~~~~lR~~~v~~i~~n~~~f~~~i~~~~~~yl~~m~~~g~wg~~~ei~A~a~~~~v~I  103 (160)
                      ..| .-+||.-||+.++.-..   ..|-..+...+   ||.   ++.   .+.+++.   |  -+-..+.|+|-.|+...
T Consensus        58 P~P-~~~CLL~Ais~at~~s~---~~LW~~Lc~~l---PDS---lL~---n~ei~~~---G--LSTDhltaLa~~~~~~c  119 (160)
T 4a5u_A           58 PQP-TLNCLLSAVSDQTKVSE---EHLWESLQTIL---PDS---QLS---NEETNTL---G--LSTEHLTALAHLYNFQA  119 (160)
T ss_dssp             CCC-SSCHHHHHHHHHHCCCH---HHHHHHHTTTS---CGG---GTS---SHHHHHH---C--CCHHHHHHHHHHHTEEE
T ss_pred             CCc-chhhhHHHHhhccCCCH---HHHHHHHHHhC---chh---hcC---chhhhhc---C--CcHHHHHHHHHHHheEE
Confidence            344 48999999999988776   44544443321   221   111   0112222   1  24466889999999999


Q ss_pred             EEEecCCCceeEEecCCCCCCCCeEEEEeCCC--CcceeeecC
Q 031421          104 CLLTSFRDTCFIEIMPQHQAPKRELWLSFWSE--VHYNSLYDI  144 (160)
Q Consensus       104 ~V~~~~~~~~~~~~~p~~~~~~~~I~L~~~~~--~HY~~l~~~  144 (160)
                      .+.+..+   .+.++..+.  ...+.|.|..|  .||......
T Consensus       120 ~~hs~~~---~~~~Gi~~a--s~~~~I~ht~G~P~HFs~~~~l  157 (160)
T 4a5u_A          120 TVYSDRG---PILFGPSDT--IKRIDITHTTGPPSHFSPGKRL  157 (160)
T ss_dssp             EEEETTE---EEEESCSSC--SEEEEEEEECSSSCEEEESCCC
T ss_pred             EEEcCCc---eEEeecCCC--ceEEEEEeCCCCCCCccCCccc
Confidence            9999753   467776544  56788888544  899877554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	160
d1tffa_	228	d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB	2e-09

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.3 bits (125), Expect = 2e-09
 Identities = 12/114 (10%), Positives = 36/114 (31%), Gaps = 4/114 (3%)

Query: 32  QFRALSDQMYKSPEYHKHVRKEVVKQLKDCRSMYEGYVPMKYKR---YYKNMAKVGEWGD 88
               + +    S    + +R      +++    +  ++  +          +  +    D
Sbjct: 111 SLLKVFNDQSASDHIVQFLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECD 170

Query: 89  HVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPKRELWLSFWSEVHYNSLY 142
           H+ + A +   +  + +         +      +A    ++L +    HYN LY
Sbjct: 171 HIQITALSQALSIALQVEYVDEMDTALNHHVFPEAATPSVYLLY-KTSHYNILY 223

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	160
d1tffa_	228	Ubiquitin thiolesterase protein OTUB2 (Otubain-2)	99.9

>d1tffa_ d.3.1.11 (A:) Ubiquitin thiolesterase protein OTUB2 (Otubain-2) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Cysteine proteinases
superfamily: Cysteine proteinases
family: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
domain: Ubiquitin thiolesterase protein OTUB2 (Otubain-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.8e-23  Score=157.60  Aligned_cols=97  Identities=12%  Similarity=0.223  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHhhccccccccccc--hHHHHHHh-hcCCceeCcHHHHHHHHHHhCCeEEEEecCCCceeEEecCCCCCCC
Q 031421           49 HVRKEVVKQLKDCRSMYEGYVPM--KYKRYYKN-MAKVGEWGDHVTLQAAADKFAAKICLLTSFRDTCFIEIMPQHQAPK  125 (160)
Q Consensus        49 ~lR~~~v~~i~~n~~~f~~~i~~--~~~~yl~~-m~~~g~wg~~~ei~A~a~~~~v~I~V~~~~~~~~~~~~~p~~~~~~  125 (160)
                      .+|..+..+|++|++.|.+|+++  ++++||.+ +.+.++|||++||.|+|++|+++|.|+..+.....+.....+....
T Consensus       128 ~lR~l~s~~i~~~~~~y~~Fi~~~~~~~~yc~~~v~~~~~e~d~ieI~aLa~al~v~I~V~~~d~~~~~~~~~~~~~~~~  207 (228)
T d1tffa_         128 FLRLLTSAFIRNRADFFRHFIDEEMDIKDFCTHEVEPMATECDHIQITALSQALSIALQVEYVDEMDTALNHHVFPEAAT  207 (228)
T ss_dssp             HHHHHHHHHHHHTHHHHGGGSCTTSCHHHHHHHHTSSTTCCCCHHHHHHHHHHHTCCEEEEECC-------CCCCCCCSS
T ss_pred             HHHHHHHHHHHHCHHHHHhHhcCCccHHHHHHHHHccccccCCcHHHHHHHHHhCCCEEEEEecCCCCccccccCCCCCC
Confidence            36999999999999999999964  78999985 8899999999999999999999999998765433222211122346


Q ss_pred             CeEEEEeCCCCcceeeecCCC
Q 031421          126 RELWLSFWSEVHYNSLYDIRD  146 (160)
Q Consensus       126 ~~I~L~~~~~~HY~~l~~~~~  146 (160)
                      ++|+|+| .++|||+|++.+.
T Consensus       208 ~~I~Lly-~pgHYdiLY~~~~  227 (228)
T d1tffa_         208 PSVYLLY-KTSHYNILYAADK  227 (228)
T ss_dssp             CSEEEEE-ETTEEEEEEECCC
T ss_pred             CEEEEEe-CCCCcccCccCCC
Confidence            7899999 6899999998763