Citrus Sinensis ID: 031632

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccEEEEcccccEEEEcccccccccccEEEEEEEccccccccccccEEEEEEccccEEEc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHccccccccHHHHcccccccHHHHHHccccccccccccccccccccccHHHHHHHHHHHcccccccccccEcccccccccEEEEEcccEEEEEEcccccccccEEEEEEEEccccccccccccEEEEEccccEEEEc
Coil and Loop (DISEMBL)
MWRRICSSQLKAQALALAQYScrsapvnpsiasrslisrplfasrhfsadsgtsvkkrvedvnpvatgheREELEAElegknileidyptgpfgtkdapaVVKSYydkrivgcpggegedehDVVWFWLekgkphecpvcsqyfvvsggsnliccc
Flexible Loop (DISEMBL)
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRhfsadsgtsvkkrvedvnpvatghereeleaelegknILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Low Complexity Region (SEG)
MWRRICSSqlkaqalalaqYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHereeleaeleGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Disordered region (IsUnstruct)
***********AQALALAQYSC**********************************************************KNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICC*
Disordered Region (DISOPRED)
*************************************************************VNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Disordered Region (DISEMBL)
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Disordered Region (DISPRO)
*WRRICSSQLKAQALALAQY*************************************RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSNLICCC
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q9SSB8	171	Cytochrome c oxidase subu	yes	no	0.923	0.842	0.625	1e-46
Q9LW15	176	Cytochrome c oxidase subu	no	no	0.923	0.818	0.647	2e-41
Q9SSS5	90	Putative cytochrome c oxi	no	no	0.455	0.788	0.690	9e-25
P10606	129	Cytochrome c oxidase subu	yes	no	0.698	0.844	0.379	4e-11
P00428	129	Cytochrome c oxidase subu	yes	no	0.698	0.844	0.387	4e-11
Q710D6	128	Cytochrome c oxidase subu	N/A	no	0.724	0.882	0.356	2e-10
Q5REG2	129	Cytochrome c oxidase subu	yes	no	0.493	0.596	0.430	3e-10
Q5S3G4	129	Cytochrome c oxidase subu	yes	no	0.493	0.596	0.417	4e-10
P19536	128	Cytochrome c oxidase subu	yes	no	0.493	0.601	0.417	3e-09
P12075	129	Cytochrome c oxidase subu	yes	no	0.673	0.813	0.336	8e-09

>sp|Q9SSB8|CX5B2_ARATH Cytochrome c oxidase subunit 5b-2, mitochondrial OS=Arabidopsis thaliana GN=COX5B-2 PE=2 SV=1

 Score =  185 bits (469), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 95/152 (62%), Positives = 113/152 (74%), Gaps = 8/152 (5%)

Query: 1   MWRRICSSQLKAQAL--ALAQYSCRSAPVNPSIASRSLISRPL------FASRHFSADSG 52
           MWRRI SS LK+ +   + A  SCR A V  +  S S  +  +      F+    SA + 
Sbjct: 1   MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRASSIPAYSSIFSRLIGSAAAD 60

Query: 53  TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVG 112
           T+VKKRVEDV P+ATGHE+EEL+AELEG+ + +ID+P GPFGTK+APAVVKSYYD RIVG
Sbjct: 61  TAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIVG 120

Query: 113 CPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
           CPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF
Sbjct: 121 CPGGEGEDEHDVVWFWLEKGKSFECPVCTQYF 152

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9LW15|CX5B1_ARATH Cytochrome c oxidase subunit 5b-1, mitochondrial OS=Arabidopsis thaliana GN=COX5B-1 PE=2 SV=1

 Score =  168 bits (425), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 99/153 (64%), Positives = 114/153 (74%), Gaps = 9/153 (5%)

Query: 1   MWRRICSSQLKAQALALAQYSCR------SAPVNPSIAS-RSLISRPLFA-SRHFSADS- 51
           MWRRI SSQLK  A  +   S R      + PV   +A+ RS IS   F   R FS+DS 
Sbjct: 1   MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60

Query: 52  GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
            T   K+VEDV P+ATGHE+EELEAELEG+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct: 61  ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query: 112 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
           GCPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF
Sbjct: 121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYF 153

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SSS5|CX5BL_ARATH Putative cytochrome c oxidase subunit 5b-like OS=Arabidopsis thaliana GN=At1g52710 PE=2 SV=2

 Score =  112 bits (280), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 49/71 (69%), Positives = 60/71 (84%)

Query: 74  LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGK 133
           L+ E  G+ +L+ID+P  PFGTK++PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK
Sbjct: 4   LDKEYSGRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGK 63

Query: 134 PHECPVCSQYF 144
             ECPVCSQYF
Sbjct: 64  SFECPVCSQYF 74

Arabidopsis thaliana (taxid: 3702)

>sp|P10606|COX5B_HUMAN Cytochrome c oxidase subunit 5B, mitochondrial OS=Homo sapiens GN=COX5B PE=1 SV=2

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 44/116 (37%), Positives = 62/116 (53%), Gaps = 7/116 (6%)

Query: 30  SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
           ++A+++L +R P  A+   S  SG  V    E     ATG ERE + A  +G +   +  
Sbjct: 11  TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66

Query: 89  PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
           P G  GT++ P +V S  +KRIVGC     ED   VVWFWL KG+   CP C  ++
Sbjct: 67  PKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVVWFWLHKGEAQRCPRCGAHY 120

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Homo sapiens (taxid: 9606)

>sp|P00428|COX5B_BOVIN Cytochrome c oxidase subunit 5B, mitochondrial OS=Bos taurus GN=COX5B PE=1 SV=2

 Score = 67.0 bits (162), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 45/116 (38%), Positives = 61/116 (52%), Gaps = 7/116 (6%)

Query: 30  SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDY 88
           ++AS++L +R P   S   S  SG  V    E     ATG ERE + A  +G++   I  
Sbjct: 11  ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66

Query: 89  PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
           P    GTK+ P +V S  +KRIVGC     ED   V+WFWL KG+   CP C  ++
Sbjct: 67  PKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHY 120

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Bos taurus (taxid: 9913)

>sp|Q710D6|COX5B_VULVU Cytochrome c oxidase subunit 5B, mitochondrial OS=Vulpes vulpes GN=COX5B PE=1 SV=1

 Score = 65.1 bits (157), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 41/115 (35%), Positives = 55/115 (47%), Gaps = 2/115 (1%)

Query: 30  SIASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYP 89
           ++  R L  +   AS   S       K  V   +  ATG ERE + A  +G +   I  P
Sbjct: 7   ALEVRELKMQTPTASCVLSTQRANFAKGGVPTDDEQATGLEREVMMAARKGLDPYNILAP 66

Query: 90  TGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
               GTK+ P +V S  +KRIVGC     ED   V+WFWL KG+   CP C  ++
Sbjct: 67  KAAAGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHY 119

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Vulpes vulpes (taxid: 9627)

>sp|Q5REG2|COX5B_PONAB Cytochrome c oxidase subunit 5B, mitochondrial OS=Pongo abelii GN=COX5B PE=2 SV=1

 Score = 64.3 bits (155), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 34/79 (43%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G +   +  P G  GT++ P +V S  +KRIVGC     ED   VV
Sbjct: 44  ATGLEREIMLAAKKGLDPYNVLAPKGASGTREDPNLVPSISNKRIVGCIC--EEDNTSVV 101

Query: 126 WFWLEKGKPHECPVCSQYF 144
           WFWL KG+   CP C  ++
Sbjct: 102 WFWLHKGEAQRCPRCGAHY 120

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Pongo abelii (taxid: 9601)

>sp|Q5S3G4|COX5B_PIG Cytochrome c oxidase subunit 5B, mitochondrial OS=Sus scrofa GN=COX5B PE=2 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G +   I  P    GTK+ P +V S  +KRIVGC     ED   V+
Sbjct: 44  ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 101

Query: 126 WFWLEKGKPHECPVCSQYF 144
           WFW+ KG+   CP C  ++
Sbjct: 102 WFWVHKGETQRCPSCGTHY 120

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Sus scrofa (taxid: 9823)

>sp|P19536|COX5B_MOUSE Cytochrome c oxidase subunit 5B, mitochondrial OS=Mus musculus GN=Cox5b PE=1 SV=1

 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/79 (41%), Positives = 44/79 (55%), Gaps = 2/79 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G +   +  P    GTK+ P +V S  +KRIVGC     ED   V+
Sbjct: 43  ATGLEREIMIAAQKGLDPYNMLPPKAASGTKEDPNLVPSISNKRIVGCIC--EEDNCTVI 100

Query: 126 WFWLEKGKPHECPVCSQYF 144
           WFWL KG+   CP C  ++
Sbjct: 101 WFWLHKGESQRCPNCGTHY 119

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Mus musculus (taxid: 10090)

>sp|P12075|COX5B_RAT Cytochrome c oxidase subunit 5B, mitochondrial OS=Rattus norvegicus GN=Cox5b PE=1 SV=2

 Score = 59.3 bits (142), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 38/113 (33%), Positives = 55/113 (48%), Gaps = 8/113 (7%)

Query: 32  ASRSLISRPLFASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTG 91
           A R+   R + A+R  ++  G    +        ATG ERE + A   G +   +  P  
Sbjct: 16  ALRAHGPRGVAATRSMASGGGVPTDEEQ------ATGLEREIMIAAQRGLDPYNMLPPKA 69

Query: 92  PFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
             GTK+ P +V S  +KRIVGC     ED   V+WFWL +G+   CP C  ++
Sbjct: 70  ASGTKEDPNLVPSVSNKRIVGCIC--EEDNCTVIWFWLHQGESQRCPNCGTHY 120

This protein is one of the nuclear-coded polypeptide chains of cytochrome c oxidase, the terminal oxidase in mitochondrial electron transport.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
388512435	153	unknown [Lotus japonicus]	0.865	0.882	0.684	8e-49
352091163	140	cytochrome c oxidase subunit Vb [Dimocar	0.897	1.0	0.753	2e-48
358248215	160	uncharacterized protein LOC100780886 [Gl	0.897	0.875	0.675	4e-47
388510728	156	unknown [Medicago truncatula]	0.871	0.871	0.659	1e-46
317106755	165	JHL25H03.12 [Jatropha curcas]	0.929	0.878	0.659	2e-46
82623399	167	cytochrome c oxidase family protein-like	0.929	0.868	0.637	3e-46
357455121	150	Cytochrome c oxidase subunit 5B [Medicag	0.846	0.88	0.666	4e-46
113734311	150	cytochrome c oxidase subunit Vb [Pisum s	0.865	0.9	0.645	5e-46
113734315	155	cytochrome c oxidase subunit Vb [Pisum s	0.878	0.883	0.636	9e-46
351721897	153	uncharacterized protein LOC100527520 [Gl	0.839	0.856	0.643	1e-45

>gi|388512435|gb|AFK44279.1| unknown [Lotus japonicus]

 Score =  197 bits (502), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 100/146 (68%), Positives = 114/146 (78%), Gaps = 11/146 (7%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
           MWRR+ SS LK  A    Q     A +N S  S SL+       RHFS    TS+KK+VE
Sbjct: 1   MWRRLLSSHLKTLATCSPQSVSTVAALNCS--SVSLL-------RHFS--DTTSIKKKVE 49

Query: 61  DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGED 120
           DV P+ATGHEREEL+A LEG++ILEI++P GPFGTK+APAVVKSYYDKRIVGCPGGEGED
Sbjct: 50  DVMPIATGHEREELQANLEGRDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGED 109

Query: 121 EHDVVWFWLEKGKPHECPVCSQYFVV 146
           EHDVVWFWLEKGKPHECPVC+QYFV+
Sbjct: 110 EHDVVWFWLEKGKPHECPVCAQYFVL 135

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|352091163|gb|AEQ61828.1| cytochrome c oxidase subunit Vb [Dimocarpus longan]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 107/142 (75%), Positives = 120/142 (84%), Gaps = 2/142 (1%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
           MWRRICSS LKA  LAL+     S+    + A+RSL S PLF +R  S+DSGTSVKK+VE
Sbjct: 1   MWRRICSSHLKA--LALSHSRSASSIAVSAAANRSLASPPLFTARLLSSDSGTSVKKKVE 58

Query: 61  DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGED 120
           DV P+ATGHEREEL AELEG+ +L+ID+P GPFGTK+APAVVKSYYDKRIVGCPGGEGED
Sbjct: 59  DVMPIATGHEREELAAELEGRKLLDIDFPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGED 118

Query: 121 EHDVVWFWLEKGKPHECPVCSQ 142
           EHDVVWFWLEKGKPHECPVCSQ
Sbjct: 119 EHDVVWFWLEKGKPHECPVCSQ 140

Source: Dimocarpus longan

Species: Dimocarpus longan

Genus: Dimocarpus

Family: Sapindaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248215|ref|NP_001240096.1| uncharacterized protein LOC100780886 [Glycine max] gi|255637280|gb|ACU18970.1| unknown [Glycine max]

 Score =  192 bits (487), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 100/148 (67%), Positives = 116/148 (78%), Gaps = 8/148 (5%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADS--GTSVKKR 58
           M RR+ SS LK     LA  +  S P + S A+R        +SR+FS  S   T++KK+
Sbjct: 1   MLRRLLSSHLKT----LAATASSSTPRSASAAARFAALS--RSSRYFSTQSEDATAIKKK 54

Query: 59  VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
           VEDV P+ATGHEREEL+AELEG+NILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEG
Sbjct: 55  VEDVMPIATGHEREELQAELEGRNILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEG 114

Query: 119 EDEHDVVWFWLEKGKPHECPVCSQYFVV 146
           EDEHDVVWFWLEK KPHECPVC+QYFV+
Sbjct: 115 EDEHDVVWFWLEKDKPHECPVCAQYFVL 142

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388510728|gb|AFK43430.1| unknown [Medicago truncatula]

 Score =  190 bits (483), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 117/147 (79%), Gaps = 11/147 (7%)

Query: 1   MWRRIC-SSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRV 59
           M RR+  SSQLK         + R +P   S  + SL+SR  F+++  S DS T +KK+V
Sbjct: 1   MLRRLLISSQLKT-------LTSRRSP--SSAVAVSLLSRHHFSTQ-SSDDSTTGIKKKV 50

Query: 60  EDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGE 119
           EDV P+ATGHEREE++A+LEG++ILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEGE
Sbjct: 51  EDVVPIATGHEREEIQAQLEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGE 110

Query: 120 DEHDVVWFWLEKGKPHECPVCSQYFVV 146
           DEHDVVWFWLEK KPHECPVC+QYFV+
Sbjct: 111 DEHDVVWFWLEKDKPHECPVCAQYFVL 137

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317106755|dbj|BAJ53249.1| JHL25H03.12 [Jatropha curcas]

 Score =  190 bits (482), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/147 (65%), Positives = 112/147 (76%), Gaps = 2/147 (1%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGT-SVKKRV 59
           MWRR  SSQLK  A   +  +                S  LF  R+F+AD+ + SV KRV
Sbjct: 1   MWRRAVSSQLKTLASCRSAAAAARFASPNRSIISPSPSASLF-HRYFNADAASGSVGKRV 59

Query: 60  EDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGE 119
           ED+ P+ATG EREELEAEL+GK+ILEI++P GPFGTK+APAVVKSYYDKRIVGCPGGEGE
Sbjct: 60  EDIMPIATGSEREELEAELQGKDILEINHPVGPFGTKEAPAVVKSYYDKRIVGCPGGEGE 119

Query: 120 DEHDVVWFWLEKGKPHECPVCSQYFVV 146
           DEHDVVWFWLEKGKPHECPVC+QYFV+
Sbjct: 120 DEHDVVWFWLEKGKPHECPVCTQYFVL 146

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|82623399|gb|ABB87114.1| cytochrome c oxidase family protein-like [Solanum tuberosum]

 Score =  189 bits (481), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 95/149 (63%), Positives = 111/149 (74%), Gaps = 4/149 (2%)

Query: 1   MWRRICSSQLKAQALALAQYSCR-SAPVNPSIASRSLISRPL--FASRHFSADSGTSVKK 57
           MWRR+ S       L     S R SA    S++S     RP   F SRHFS  S   VKK
Sbjct: 1   MWRRLSSQVRTLSPLRSTAKSNRLSAAAVTSLSSSPATFRPTVPFISRHFSTASANVVKK 60

Query: 58  RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
            +EDV P+ATGHEREELEAE++GK++L I++P GPFGTK+APAVV+SYYDKRIVGCPG E
Sbjct: 61  -IEDVMPIATGHEREELEAEIQGKDLLAINFPEGPFGTKEAPAVVESYYDKRIVGCPGDE 119

Query: 118 GEDEHDVVWFWLEKGKPHECPVCSQYFVV 146
           GEDEHDVVWFWLEKGKPHECPVC+Q+FV+
Sbjct: 120 GEDEHDVVWFWLEKGKPHECPVCAQHFVL 148

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455121|ref|XP_003597841.1| Cytochrome c oxidase subunit 5B [Medicago truncatula] gi|355486889|gb|AES68092.1| Cytochrome c oxidase subunit 5B [Medicago truncatula] gi|388495938|gb|AFK36035.1| unknown [Medicago truncatula]

 Score =  189 bits (479), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 98/147 (66%), Positives = 112/147 (76%), Gaps = 15/147 (10%)

Query: 1   MWRRICSS-QLKAQALALAQYSCRSAPVNPSIASRSLISRPLFA--SRHFSADSGTSVKK 57
           MWRRI SS  LK  A      S  S P       RS ++   FA  SRH +  S  SVKK
Sbjct: 1   MWRRIVSSPHLKTLA-----SSSHSHP-------RSAVAGLRFAGLSRHVATQSAGSVKK 48

Query: 58  RVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
            VEDV P+ATGHEREE++A+LEG+NILEID+P GPFGTK+APAVVKSYY++RIVGCPGGE
Sbjct: 49  TVEDVVPIATGHEREEIQADLEGRNILEIDHPEGPFGTKEAPAVVKSYYNRRIVGCPGGE 108

Query: 118 GEDEHDVVWFWLEKGKPHECPVCSQYF 144
           GEDEHDVVWFWLE+GKPHECPVC+QYF
Sbjct: 109 GEDEHDVVWFWLEEGKPHECPVCAQYF 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113734311|dbj|BAF30481.1| cytochrome c oxidase subunit Vb [Pisum sativum] gi|113734317|dbj|BAF30484.1| cytochrome c oxidase subunit Vb [Pisum sativum]

 Score =  188 bits (478), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 108/144 (75%), Gaps = 9/144 (6%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
           MWRR+ +S       + +    RSA             R +  SRH +  S  SVKKRVE
Sbjct: 1   MWRRLFTSPHLKTLSSSSLSHPRSAVAG---------IRCVDLSRHVATQSAASVKKRVE 51

Query: 61  DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGED 120
           DV P+ATGHEREE++AELEG+NILEID+P GPFGTKDAPAVV+S+YD+RIVGCPGGEGED
Sbjct: 52  DVVPIATGHEREEIQAELEGRNILEIDHPEGPFGTKDAPAVVRSFYDRRIVGCPGGEGED 111

Query: 121 EHDVVWFWLEKGKPHECPVCSQYF 144
           EHDVVWFWLEKGKPHECPVC+QYF
Sbjct: 112 EHDVVWFWLEKGKPHECPVCTQYF 135

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|113734315|dbj|BAF30483.1| cytochrome c oxidase subunit Vb [Pisum sativum]

 Score =  187 bits (476), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 93/146 (63%), Positives = 113/146 (77%), Gaps = 9/146 (6%)

Query: 1   MWRRICSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSGTSVKKRVE 60
           M RR+ SSQLK    + +     S  V  S+ S       LF+++   +D  T VKK+VE
Sbjct: 1   MLRRLISSQLKTLTSSSSPLRSPSPAVAVSLLS------CLFSTQ---SDDSTVVKKKVE 51

Query: 61  DVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGED 120
           D+ P+ATGHEREEL+A++EG++ILEID+P GPFGTK+APAVVKSYYDKRIVGCPGGEGED
Sbjct: 52  DIVPIATGHEREELQAQIEGRDILEIDHPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGED 111

Query: 121 EHDVVWFWLEKGKPHECPVCSQYFVV 146
           EHDVVWFWLEK KPHECPVC+QYFV+
Sbjct: 112 EHDVVWFWLEKDKPHECPVCAQYFVL 137

Source: Pisum sativum

Species: Pisum sativum

Genus: Pisum

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721897|ref|NP_001237225.1| uncharacterized protein LOC100527520 [Glycine max] gi|255632532|gb|ACU16616.1| unknown [Glycine max]

 Score =  187 bits (475), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 94/146 (64%), Positives = 116/146 (79%), Gaps = 15/146 (10%)

Query: 1   MWRRI-CSSQLKAQALALAQYSCRSAPVNPSIASRSLISRPLFASRHFSADSG-TSVKKR 58
           MWRR+  SS LKA    L+       P  P +A+++L++R      HF+A SG +S+KKR
Sbjct: 1   MWRRLFSSSNLKALHTTLS-------PSRPRLAAQTLLAR------HFTAQSGASSLKKR 47

Query: 59  VEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEG 118
           VEDV P+ATGHEREE++A+LEG++ILEI++P GPFGTK+APAVVKSY+D+RIVGCPG EG
Sbjct: 48  VEDVVPIATGHEREEIQADLEGRDILEINHPVGPFGTKEAPAVVKSYFDRRIVGCPGDEG 107

Query: 119 EDEHDVVWFWLEKGKPHECPVCSQYF 144
           E EHDVVWFWLEKGKP ECPVCSQYF
Sbjct: 108 EGEHDVVWFWLEKGKPIECPVCSQYF 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
TAIR|locus:2093267	176	AT3G15640 [Arabidopsis thalian	0.923	0.818	0.562	1.3e-38
TAIR|locus:2016284	171	AT1G80230 [Arabidopsis thalian	0.916	0.836	0.568	2.1e-38
UNIPROTKB|P92683	169	coxVb "Cytochrome c oxidase su	0.935	0.863	0.476	6e-32
TAIR|locus:2035069	90	AT1G52710 [Arabidopsis thalian	0.416	0.722	0.723	2.9e-25
UNIPROTKB|P10606	129	COX5B "Cytochrome c oxidase su	0.698	0.844	0.344	8.4e-10
UNIPROTKB|P00428	129	COX5B "Cytochrome c oxidase su	0.698	0.844	0.353	1.1e-09
UNIPROTKB|B7ZDP5	128	cox5b "Cytochrome c oxidase po	0.641	0.781	0.343	4.7e-09
UNIPROTKB|E2RHV9	129	COX5B "Uncharacterized protein	0.493	0.596	0.379	5.9e-09
DICTYBASE|DDB_G0269118	120	cxeA "cytochrome c oxidase sub	0.346	0.45	0.454	9.7e-09
UNIPROTKB|Q5S3G4	129	COX5B "Cytochrome c oxidase su	0.512	0.620	0.385	9.7e-09

TAIR|locus:2093267 AT3G15640 [Arabidopsis thaliana (taxid:3702)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 86/153 (56%), Positives = 98/153 (64%)

Query:     1 MWRRICSSXXXXXXXXXXXYSCR---SAPVNPS----IASRSLISRPLFA-SRHFSADS- 51
             MWRRI SS            S R   +A   P      A+RS IS   F   R FS+DS 
Sbjct:     1 MWRRIVSSQLKTLAADVVAASPRRSIAATTRPVGFYLAANRSAISASSFVIPRRFSSDSV 60

Query:    52 GTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
              T   K+VEDV P+ATGH          G+ + +ID+P GPFGTK+APA+VKSYYDKRIV
Sbjct:    61 ETPATKKVEDVMPIATGHEKEELEAELEGRRLDDIDFPEGPFGTKEAPAIVKSYYDKRIV 120

Query:   112 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
             GCPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF
Sbjct:   121 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYF 153

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0006007 "glucose catabolic process" evidence=RCA

TAIR|locus:2016284 AT1G80230 [Arabidopsis thaliana (taxid:3702)]

 Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
 Identities = 87/153 (56%), Positives = 102/153 (66%)

Query:     1 MWRRICSSXXXXXXXXXX--XYSCRSAPVNP---SIASRSLISRPLFAS---RHF-SADS 51
             MWRRI SS              SCR A V     S+++R+  S P ++S   R   SA +
Sbjct:     1 MWRRIVSSHLKSISAVGSCAAPSCRHAVVESTHLSLSTRAS-SIPAYSSIFSRLIGSAAA 59

Query:    52 GTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIV 111
              T+VKKRVEDV P+ATGH          G+ + +ID+P GPFGTK+APAVVKSYYD RIV
Sbjct:    60 DTAVKKRVEDVMPIATGHEKEELQAELEGRKLDDIDFPEGPFGTKEAPAVVKSYYDMRIV 119

Query:   112 GCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
             GCPGGEGEDEHDVVWFWLEKGK  ECPVC+QYF
Sbjct:   120 GCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYF 152

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0005740 "mitochondrial envelope" evidence=IEA;ISS

UNIPROTKB|P92683 coxVb "Cytochrome c oxidase subunit Vb" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 71/149 (47%), Positives = 88/149 (59%)

Query:     1 MWRRICSSXXXXXXXXXXXYSCR-SAPVNPSIASRS--LISRPLFASRHFSADSGTSVKK 57
             MWRR+ +             S   S    P+  +R+  L +    A R  S         
Sbjct:     1 MWRRLQTLAPALRRAASASASAAASGAAGPASLARAAPLSTAAAAAFRRTSPLLSGDKPA 60

Query:    58 RVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGE 117
              VEDV P+ATG           G+   ++D P GPFGTK+APAV++SYY+KRIVGCPGGE
Sbjct:    61 TVEDVMPIATGLEREELAAELKGEKRFDMDPPVGPFGTKEAPAVIESYYNKRIVGCPGGE 120

Query:   118 GEDEHDVVWFWLEKGKPHECPVCSQYFVV 146
             GEDEHDVVWFWL+K +PHECPVCSQYFV+
Sbjct:   121 GEDEHDVVWFWLKKDEPHECPVCSQYFVL 149

GO:0005739 "mitochondrion" evidence=IC;ISS

TAIR|locus:2035069 AT1G52710 [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 47/65 (72%), Positives = 57/65 (87%)

Query:    80 GKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPV 139
             G+ +L+ID+P  PFGTK++PAVV+SY+DKR +GC GGEGED HDVVWFWL+KGK  ECPV
Sbjct:    10 GRRLLDIDHPESPFGTKESPAVVQSYFDKRNIGCRGGEGEDGHDVVWFWLDKGKSFECPV 69

Query:   140 CSQYF 144
             CSQYF
Sbjct:    70 CSQYF 74

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0005740 "mitochondrial envelope" evidence=IEA

UNIPROTKB|P10606 COX5B "Cytochrome c oxidase subunit 5B, mitochondrial" [Homo sapiens (taxid:9606)]

 Score = 141 (54.7 bits), Expect = 8.4e-10, P = 8.4e-10
 Identities = 40/116 (34%), Positives = 56/116 (48%)

Query:    30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDY 88
             ++A+++L +R P  A+   S  SG  V    E     ATG           G +   +  
Sbjct:    11 TLAAQALRARGPSGAAAMRSMASGGGVPTDEEQ----ATGLEREIMLAAKKGLDPYNVLA 66

Query:    89 PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
             P G  GT++ P +V S  +KRIVGC   E  D   VVWFWL KG+   CP C  ++
Sbjct:    67 PKGASGTREDPNLVPSISNKRIVGCICEE--DNTSVVWFWLHKGEAQRCPRCGAHY 120

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0007585 "respiratory gaseous exchange" evidence=TAS

GO:0005743 "mitochondrial inner membrane" evidence=TAS

GO:0022904 "respiratory electron transport chain" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

UNIPROTKB|P00428 COX5B "Cytochrome c oxidase subunit 5B, mitochondrial" [Bos taurus (taxid:9913)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 41/116 (35%), Positives = 55/116 (47%)

Query:    30 SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDY 88
             ++AS++L +R P   S   S  SG  V    E     ATG           G++   I  
Sbjct:    11 ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66

Query:    89 PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
             P    GTK+ P +V S  +KRIVGC   E  D   V+WFWL KG+   CP C  ++
Sbjct:    67 PKATSGTKEDPNLVPSITNKRIVGCICEE--DNSTVIWFWLHKGEAQRCPSCGTHY 120

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|B7ZDP5 cox5b "Cytochrome c oxidase polypeptide Vb" [Canis lupus familiaris (taxid:9615)]

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 35/102 (34%), Positives = 44/102 (43%)

Query:    43 ASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVV 102
             AS   S       K  V   +  ATG           G +   I  P    GTK+ P +V
Sbjct:    20 ASCVLSTQRANFAKGGVPTDDEQATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLV 79

Query:   103 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
              S  +KRIVGC   E  D   V+WFWL KG+   CP C  ++
Sbjct:    80 PSITNKRIVGCICEE--DNSTVIWFWLHKGEAQRCPSCGTHY 119

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

UNIPROTKB|E2RHV9 COX5B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 133 (51.9 bits), Expect = 5.9e-09, P = 5.9e-09
 Identities = 30/79 (37%), Positives = 38/79 (48%)

Query:    66 ATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
             ATG           G +   I  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct:    44 ATGLEREVMMAARKGLDPYNILAPKAAAGTKEDPNLVPSITNKRIVGCICEE--DNSTVI 101

Query:   126 WFWLEKGKPHECPVCSQYF 144
             WFWL KG+   CP C  ++
Sbjct:   102 WFWLHKGEAQRCPSCGTHY 120

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

DICTYBASE|DDB_G0269118 cxeA "cytochrome c oxidase subunit V" [Dictyostelium discoideum (taxid:44689)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 25/55 (45%), Positives = 35/55 (63%)

Query:    90 TGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
             TG FGT  +P +V+S +  RIV C GG+GE EHD+++  + + KP  C  C Q F
Sbjct:    53 TGAFGTLKSPVIVESIFHSRIVACEGGDGE-EHDILFHTVAEKKPTICLDCGQVF 106

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0009617 "response to bacterium" evidence=IEP

GO:0005740 "mitochondrial envelope" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

UNIPROTKB|Q5S3G4 COX5B "Cytochrome c oxidase subunit 5B, mitochondrial" [Sus scrofa (taxid:9823)]

 Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
 Identities = 32/83 (38%), Positives = 41/83 (49%)

Query:    66 ATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
             ATG           G +   I  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct:    44 ATGLEREVMMAARKGLDPYNILAPKAASGTKEDPNLVPSITNKRIVGCICEE--DNSTVI 101

Query:   126 WFWLEKGKPHECPVC-SQYFVVS 147
             WFW+ KG+   CP C + Y +VS
Sbjct:   102 WFWVHKGETQRCPSCGTHYKLVS 124

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0004129 "cytochrome-c oxidase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SSB8	CX5B2_ARATH	No assigned EC number	0.625	0.9230	0.8421	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G80230	cytochrome c oxidase family protein; cytochrome c oxidase family protein; FUNCTIONS IN- cytochrome-c oxidase activity; LOCATED IN- mitochondrial envelope, mitochondrion; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Cytochrome c oxidase, subunit Vb (InterPro-IPR002124); BEST Arabidopsis thaliana protein match is- cytochrome c oxidase family protein (TAIR-AT3G15640.1); Has 341 Blast hits to 341 proteins in 124 species- Archae - 0; Bacteria - 0; Metazoa - 189; Fungi - 63; Plants - 54; Viruses - 0; Other Eukaryotes - 35 (source- NCBI BLink). (171 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	CI51	CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NAD [...] (486 aa)				•			•		0.922
	AT2G02050	NADH-ubiquinone oxidoreductase B18 subunit, putative; NADH-ubiquinone oxidoreductase B18 subuni [...] (103 aa)				•			•		0.875
	ATWHY2	ATWHY2 (A. THALIANA WHIRLY 2); DNA binding; Encodes a homolog of the potato p24 protein. It sha [...] (238 aa)				•			•		0.833
	COX6B	COX6B (CYTOCHROME C OXIDASE 6B); cytochrome-c oxidase; subunit 6b of cytochrome c oxidase (191 aa)				•		•	•		0.811
	AT1G71780	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (197 aa)				•					0.501
	AT2G17360	40S ribosomal protein S4 (RPS4A); 40S ribosomal protein S4 (RPS4A); FUNCTIONS IN- structural co [...] (261 aa)				•					0.465
	AT3G15640	cytochrome c oxidase family protein; cytochrome c oxidase family protein; FUNCTIONS IN- cytochr [...] (176 aa)				•		•		•	0.454
	AT5G07960	unknown protein; unknown protein; INVOLVED IN- biological_process unknown; LOCATED IN- cellular [...] (107 aa)				•					0.445
	ORF262	unknown protein; hypothetical protein (262 aa)							•		0.435
	COX3	unknown protein; Encodes cytochrome c oxidase subunit 3. ; Subunits I, II and III form the func [...] (265 aa)					•	•	•		0.424

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	156
PLN02294	174	PLN02294, PLN02294, cytochrome c oxidase subunit V	6e-83
cd00924	97	cd00924, Cyt_c_Oxidase_Vb, Cytochrome c oxidase su	5e-35
pfam01215	136	pfam01215, COX5B, Cytochrome c oxidase subunit Vb	3e-22
PTZ00043	268	PTZ00043, PTZ00043, cytochrome c oxidase subunit;	1e-10

>gnl|CDD|177931 PLN02294, PLN02294, cytochrome c oxidase subunit Vb

 Score =  241 bits (616), Expect = 6e-83
 Identities = 102/153 (66%), Positives = 117/153 (76%), Gaps = 7/153 (4%)

Query: 1   MWRRICSSQLKAQALALAQYSCR---SAPVNPSIASRSLISRPLFAS---RHFSADS-GT 53
           MWRRI SS LK  A ++   S R    A   P   SRS  S    +S   R+FS++S  T
Sbjct: 1   MWRRIVSSHLKTLAASVVAASPRRTVVATTRPLYLSRSRSSISASSSVFSRYFSSESADT 60

Query: 54  SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
           +VKKRVEDV P+ATGHEREELEAELEG+ +L+ID+P GPFGTK+APAVVKSYYDKRIVGC
Sbjct: 61  AVKKRVEDVMPIATGHEREELEAELEGRKLLDIDFPEGPFGTKEAPAVVKSYYDKRIVGC 120

Query: 114 PGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVV 146
           PGGEGEDEHDVVWFWLEKGK  ECPVC+QYF +
Sbjct: 121 PGGEGEDEHDVVWFWLEKGKSFECPVCTQYFEL 153

Length = 174

>gnl|CDD|238464 cd00924, Cyt_c_Oxidase_Vb, Cytochrome c oxidase subunit Vb

 Score =  117 bits (294), Expect = 5e-35
 Identities = 44/91 (48%), Positives = 55/91 (60%), Gaps = 2/91 (2%)

Query: 54  SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
           + +  V      ATG ER+EL A+LEG +  ++    GPFGTK+ P +V S +DKRIVGC
Sbjct: 1   AAEGEVPTDLEQATGLERKELLAKLEGIDDFDMKPLKGPFGTKEDPNLVPSAFDKRIVGC 60

Query: 114 PGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
                 D HDV+W WLEKGKP  CP C   F
Sbjct: 61  IC--EPDSHDVIWMWLEKGKPKRCPECGHVF 89

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly. Length = 97

>gnl|CDD|201667 pfam01215, COX5B, Cytochrome c oxidase subunit Vb

 Score = 85.8 bits (212), Expect = 3e-22
 Identities = 31/79 (39%), Positives = 43/79 (54%), Gaps = 1/79 (1%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG EREEL A L+G++  +I       GT   P +V+S  + RIVGC G      H ++
Sbjct: 45  ATGLEREELLAALKGRDPFDIKPLDASKGTLKDPIIVESIDNYRIVGCTGSPDG-SHTII 103

Query: 126 WFWLEKGKPHECPVCSQYF 144
           WF + KG+   CP C   +
Sbjct: 104 WFTVHKGEAQRCPECGSVY 122

Length = 136

>gnl|CDD|240240 PTZ00043, PTZ00043, cytochrome c oxidase subunit; Provisional

 Score = 57.5 bits (139), Expect = 1e-10
 Identities = 25/54 (46%), Positives = 32/54 (59%)

Query: 91  GPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
           GPFGT + P +V S   +R+VGC GG GE EH  +WF   +G  + C  C Q F
Sbjct: 138 GPFGTIENPVLVPSVGTERVVGCTGGTGEHEHVPLWFRCREGFLYRCGECDQIF 191

Length = 268

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
PLN02294	174	cytochrome c oxidase subunit Vb	100.0
cd00924	97	Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb.	100.0
KOG3352	153	consensus Cytochrome c oxidase, subunit Vb/COX4 [E	100.0
PF01215	136	COX5B: Cytochrome c oxidase subunit Vb This family	100.0
PTZ00043	268	cytochrome c oxidase subunit; Provisional	99.97
PF10276	40	zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Z	97.51
KOG3456	120	consensus NADH:ubiquinone oxidoreductase, NDUFS6/1	96.32
COG4391	62	Uncharacterized protein conserved in bacteria [Fun	93.6
PF06397	36	Desulfoferrod_N: Desulfoferrodoxin, N-terminal dom	90.92
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	84.99
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	84.56
COG5189	423	SFP1 Putative transcriptional repressor regulating	84.1

>PLN02294 cytochrome c oxidase subunit Vb

Probab=100.00  E-value=8e-61  Score=385.37  Aligned_cols=150  Identities=68%  Similarity=1.104  Sum_probs=131.1

Q ss_pred             ChhhhhhhhhHHHHHHhhhcCCCCCCcCCcc-----ccccccc-ccccccccccCCC-CCccccccCCCCCccchHHHHH
Q 031632            1 MWRRICSSQLKAQALALAQYSCRSAPVNPSI-----ASRSLIS-RPLFASRHFSADS-GTSVKKRVEDVNPVATGHEREE   73 (156)
Q Consensus         1 m~rr~~~~~l~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~~~~~~~~~-~~~~~~~vpd~~EqATGlER~E   73 (156)
                      ||||++++|||+||++.++.++++.+++.+.     .+++.++ ++++|+|+|++.+ +++++++|+|+|||||||||+|
T Consensus         1 MwRr~~ss~L~~la~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~d~~~~ATGLER~E   80 (174)
T PLN02294          1 MWRRIVSSHLKTLAASVVAASPRRTVVATTRPLYLSRSRSSISASSSVFSRYFSSESADTAVKKRVEDVMPIATGHEREE   80 (174)
T ss_pred             ChhhHHHHHHHHHHHhhcccCcccccccccccccccccccccCchhhhhhhccccccccccccccCCCchhhccchHHHH
Confidence            9999999999999988755544444321111     2344444 4489999999888 6889999999999999999999


Q ss_pred             HHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCccccCCCCcEEEEeccC
Q 031632           74 LEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGS  150 (156)
Q Consensus        74 Lla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p~RC~eCG~~FkL~~~~  150 (156)
                      |||+++|+|||||+++++++||||||+||||++++|||||+|+.++|+|+|+||||++|+|+||||||+||||+++.
T Consensus        81 Lla~leG~D~Fd~~~~~gp~GTke~P~lVpS~~d~RiVGCtg~~~eDsh~v~Wf~L~kGkp~RCpeCG~~fkL~~vG  157 (174)
T PLN02294         81 LEAELEGRKLLDIDFPEGPFGTKEAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKSFECPVCTQYFELEVVG  157 (174)
T ss_pred             HHHHHcCCCccccccccCCCCCccCCcEeccCCCceEEeeCCCCCCCCceeEEEEecCCCceeCCCCCCEEEEEEeC
Confidence            99999999999999999999999999999999999999999965689999999999999999999999999999875

>cd00924 Cyt_c_Oxidase_Vb Cytochrome c oxidase subunit Vb

Probab=100.00  E-value=4.6e-47  Score=281.43  Aligned_cols=95  Identities=46%  Similarity=0.821  Sum_probs=90.9

Q ss_pred             cccccCCCCCccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCc
Q 031632           55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKP  134 (156)
Q Consensus        55 ~~~~vpd~~EqATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p  134 (156)
                      ..|+||||+||||||||+||+|+++|+|+|+|+++++++||++||+||||++++|||||+|+|  |+|+|+||||++|+|
T Consensus         2 ~~g~vp~d~e~aTGlEr~ELl~~~~G~d~f~~~~~~~~~GT~e~P~lVpS~~~~RiVGC~g~~--~~h~v~W~~l~~g~~   79 (97)
T cd00924           2 AEGEVPTDLEQATGLERKELLAKLEGIDDFDMKPLKGPFGTKEDPNLVPSAFDKRIVGCICEP--DSHDVIWMWLEKGKP   79 (97)
T ss_pred             CCcccCCchHhhhccHHHHHHHHHcCCccccccccccCCCCccCCeEecCCCCCeEEeeeCCC--CCceEEEEEEeCCCc
Confidence            468999999999999999999999999999999999999999999999999999999999965  699999999999999


Q ss_pred             cccCCCCcEEEEeccCc
Q 031632          135 HECPVCSQYFVVSGGSN  151 (156)
Q Consensus       135 ~RC~eCG~~FkL~~~~~  151 (156)
                      +||++|||||||++++.
T Consensus        80 ~rC~eCG~~fkL~~v~~   96 (97)
T cd00924          80 KRCPECGHVFKLVDVGP   96 (97)
T ss_pred             eeCCCCCcEEEEEECCC
Confidence            99999999999999863

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Vb is one of three mammalian subunits that lacks a transmembrane region. Subunit Vb is located on the matrix side of the membrane and binds the regulatory subunit of protein kinase A. The abnormally extended conformation is stable only in the CcO assembly.

>KOG3352 consensus Cytochrome c oxidase, subunit Vb/COX4 [Energy production and conversion]

Probab=100.00  E-value=1.5e-46  Score=297.56  Aligned_cols=98  Identities=49%  Similarity=0.864  Sum_probs=93.1

Q ss_pred             CCccccccCCCCCccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeec
Q 031632           52 GTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEK  131 (156)
Q Consensus        52 ~~~~~~~vpd~~EqATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~k  131 (156)
                      .....|.||||+||||||||+|||++++|.|||||+.+++++|||++||||||+||+|||||.|  ++|+|+|+||||+|
T Consensus        53 ~~~~~g~vpddle~aTGlEk~eLla~l~G~d~~d~k~~~~~~GTkedP~lV~S~~d~RiVGC~c--~eD~~~V~Wmwl~K  130 (153)
T KOG3352|consen   53 PMAKGGGVPDDLEQATGLEKEELLAELEGRDPFDMKVPRGPSGTKEDPNLVPSYYDKRIVGCGC--EEDSHAVVWMWLEK  130 (153)
T ss_pred             ccccCCCCCCchhhhhhHHHHHHHHHhhCCCccccccccCCCCcccCCccccccCCceEEeecc--cCCCcceEEEEEEc
Confidence            3667899999999999999999999999999999999999999999999999999999999977  58999999999999


Q ss_pred             CCccccCCCCcEEEEeccCc
Q 031632          132 GKPHECPVCSQYFVVSGGSN  151 (156)
Q Consensus       132 G~p~RC~eCG~~FkL~~~~~  151 (156)
                      |+++|||||||||||+.+..
T Consensus       131 ge~~rc~eCG~~fkL~~v~~  150 (153)
T KOG3352|consen  131 GETQRCPECGHYFKLVPVGP  150 (153)
T ss_pred             CCcccCCcccceEEeeecCC
Confidence            99999999999999998753

>PF01215 COX5B: Cytochrome c oxidase subunit Vb This family consists of chains F and S ; InterPro: IPR002124 Cytochrome c oxidase (1

Probab=100.00  E-value=1.6e-46  Score=293.08  Aligned_cols=98  Identities=47%  Similarity=0.850  Sum_probs=71.8

Q ss_pred             CccccccCCCCCccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecC
Q 031632           53 TSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKG  132 (156)
Q Consensus        53 ~~~~~~vpd~~EqATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG  132 (156)
                      ....|+|||++||||||||+||||+++|+|||||+++++++||+||||||||++++|||||+|+| +|+|+|+||||++|
T Consensus        32 ~a~~G~vptd~eqATGlER~Ella~~~G~D~Fd~~~~~~~~GT~e~P~lVpS~~~~RiVGC~g~~-~~sH~v~W~~l~~g  110 (136)
T PF01215_consen   32 GAKPGTVPTDLEQATGLEREELLAKLEGIDPFDMKPLKAPFGTKEDPILVPSYFDERIVGCTGEP-DDSHDVIWFWLHKG  110 (136)
T ss_dssp             -----BS--HHHH--HHHHHHHHHHHTT--TT--S--B----SSSS-CEEEESSSCEEEEESSST-T-SSS-EEEEEETT
T ss_pred             cccCCCCCChhHhhhHHHHHHHHHHhcCcCcccccCccCCCCCccCCeEccCCCCceEEeeccCC-CCcceeEEEEEeCC
Confidence            44678999999999999999999999999999999999999999999999999999999999987 67899999999999


Q ss_pred             CccccCCCCcEEEEeccCc
Q 031632          133 KPHECPVCSQYFVVSGGSN  151 (156)
Q Consensus       133 ~p~RC~eCG~~FkL~~~~~  151 (156)
                      +|+|||+||+||||+++.+
T Consensus       111 ~~~RCpeCG~~fkL~~vg~  129 (136)
T PF01215_consen  111 KPQRCPECGQVFKLKYVGP  129 (136)
T ss_dssp             SEEEETTTEEEEEEEE---
T ss_pred             CccCCCCCCeEEEEEEcCC
Confidence            9999999999999999864

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits, which is known as Vb in mammals, V in Dictyostelium discoideum (Slime mold) and IV in yeast, binds a zinc atom. The sequence of subunit Vb is well conserved and includes three conserved cysteines that coordinate the zinc ion [, ]. Two of these cysteines are clustered in the C-terminal section of the subunit.; GO: 0004129 cytochrome-c oxidase activity, 0005740 mitochondrial envelope; PDB: 2EIL_S 2ZXW_S 3ASN_S 1OCO_S 3AG4_S 3ABK_S 1OCZ_S 1OCC_F 3ASO_S 3ABL_S ....

>PTZ00043 cytochrome c oxidase subunit; Provisional

Probab=99.97  E-value=7.9e-31  Score=220.73  Aligned_cols=85  Identities=34%  Similarity=0.573  Sum_probs=79.9

Q ss_pred             ccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCccccCCCCcEE
Q 031632           65 VATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF  144 (156)
Q Consensus        65 qATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p~RC~eCG~~F  144 (156)
                      |....+.+.|+|.++|.+.+.++++.+|+||+|+|+||||++++|||||+|+++||+|+|+|||+++|+++|||+||+||
T Consensus       112 qi~~~~~~hm~~~le~y~~Lk~~~~~GPfGTkEdPiLVpSy~deRyVGCTGg~~EDeH~VvWFwLrEGkpqRCpECGqVF  191 (268)
T PTZ00043        112 QIVNEPSEHMLGLLELYEYLKSSSFVGPFGTIENPVLVPSVGTERVVGCTGGTGEHEHVPLWFRCREGFLYRCGECDQIF  191 (268)
T ss_pred             eecCCchHHHHHHHHHHHhcCcCCCCCCCCCccCCeEeccCCCceEEeccCCCccCCceeEEEEecCCCCccCCCCCcEE
Confidence            34445889999999999999999999999999999999999999999999988899999999999999999999999999


Q ss_pred             EEecc
Q 031632          145 VVSGG  149 (156)
Q Consensus       145 kL~~~  149 (156)
                      ||+++
T Consensus       192 KLVr~  196 (268)
T PTZ00043        192 MLVRV  196 (268)
T ss_pred             EEEEE
Confidence            99983

>PF10276 zf-CHCC: Zinc-finger domain; InterPro: IPR019401 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=97.51  E-value=0.00011  Score=47.16  Aligned_cols=39  Identities=38%  Similarity=0.758  Sum_probs=33.0

Q ss_pred             CceeEeecCCCCCCCcceEEEEeec-CCccccCCCCcEEE
Q 031632          107 DKRIVGCPGGEGEDEHDVVWFWLEK-GKPHECPVCSQYFV  145 (156)
Q Consensus       107 ~~RiVGC~g~p~eDsh~v~Wf~L~k-G~p~RC~eCG~~Fk  145 (156)
                      +.|+|-|.|..++-.|-.+|+.|.+ +++..||.||.-|+
T Consensus         1 ~~~~v~CdG~~~~lgHPrVyl~l~~~~~~~~CpYCg~~yv   40 (40)
T PF10276_consen    1 DGRRVSCDGGGGALGHPRVYLNLDDEPGPVVCPYCGTRYV   40 (40)
T ss_dssp             -SSEEEEEESSTTSCCCCEEEE-TTTTCEEEETTTTEEEE
T ss_pred             CCcEEEeCCCCCCCCCCeEEEecCCCCCeEECCCCCCEEC
Confidence            4689999998767799999999999 58899999999885

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a short conserved zinc-finger domain. It contains the sequence motif Cx8Hx14Cx2C. ; PDB: 2JVM_A 2JRR_A 2JZ8_A.

>KOG3456 consensus NADH:ubiquinone oxidoreductase, NDUFS6/13 kDa subunit [Energy production and conversion]

Probab=96.32  E-value=0.0032  Score=48.76  Aligned_cols=44  Identities=36%  Similarity=0.602  Sum_probs=38.4

Q ss_pred             eccCCceeEeecCCCCCCCcceEEEEeecCCccccCCCCcEEEE
Q 031632          103 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVV  146 (156)
Q Consensus       103 pS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p~RC~eCG~~FkL  146 (156)
                      |+.-+.|||.|-|+.++=-|-.+|+.|.|..++-|..||.-|.-
T Consensus        73 p~e~d~RVV~CdGg~~aLGHPkvyInLDk~~~~~CgYCGlrf~~  116 (120)
T KOG3456|consen   73 PIEVDGRVVACDGGTPALGHPKVYINLDKPGPHICGYCGLRFVQ  116 (120)
T ss_pred             hhhccceEEEecCCCCCCCCCeEEEEcCCCCCcccccchhhhhh
Confidence            34459999999998877799999999999889999999988753

>COG4391 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=93.60  E-value=0.14  Score=35.99  Aligned_cols=47  Identities=21%  Similarity=0.397  Sum_probs=36.0

Q ss_pred             CeeeeccCCceeEeecCCCCCCCcceEEEEeecCCccccCCCCcEEEEe
Q 031632           99 PAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVS  147 (156)
Q Consensus        99 P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p~RC~eCG~~FkL~  147 (156)
                      ++.|....-  -+-|.|..++-+|-=+|+-+.+..-.-||.||..|+|.
T Consensus        15 ~~~I~~~~~--~l~C~g~~~p~~HPrV~L~mg~~gev~CPYC~t~y~l~   61 (62)
T COG4391          15 HETIEIGDL--PLMCPGPEPPNDHPRVFLDMGDEGEVVCPYCSTRYRLN   61 (62)
T ss_pred             ceEEEeCCe--eEEcCCCCCCCCCCEEEEEcCCCCcEecCccccEEEec
Confidence            555544322  25799887778999999999665667799999999985

>PF06397 Desulfoferrod_N: Desulfoferrodoxin, N-terminal domain; InterPro: IPR004462 This domain is found as essentially the full length of desulforedoxin, a 37-residue homodimeric non-haem iron protein

Probab=90.92  E-value=0.15  Score=32.08  Aligned_cols=26  Identities=31%  Similarity=0.750  Sum_probs=16.2

Q ss_pred             ecCCccccCCCCcEEEEeccCc--ceee
Q 031632          130 EKGKPHECPVCSQYFVVSGGSN--LICC  155 (156)
Q Consensus       130 ~kG~p~RC~eCG~~FkL~~~~~--~~~~  155 (156)
                      ++++-++|..||+...+.+...  |+||
T Consensus         2 ~~~~~YkC~~CGniVev~~~g~g~lvCC   29 (36)
T PF06397_consen    2 KKGEFYKCEHCGNIVEVVHDGGGPLVCC   29 (36)
T ss_dssp             -TTEEEE-TTT--EEEEEE--SS-EEET
T ss_pred             CcccEEEccCCCCEEEEEECCCCCEEeC
Confidence            3577899999999998877654  7776

It is also found as the N-terminal domain of desulfoferrodoxin (rbo), a homodimeric non-haem iron protein with 2 Fe atoms per monomer in different oxidation states. This domain binds the ferric rather than the ferrous Fe of desulfoferrodoxin. Neelaredoxin, a monomeric blue non-haem iron protein, lacks this domain.; GO: 0005506 iron ion binding; PDB: 1DFX_A 1VZI_B 2JI2_D 1VZH_B 2JI3_C 2JI1_C 1VZG_A 1CFW_A 2LK5_B 1DHG_B ....

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=84.99  E-value=0.48  Score=26.90  Aligned_cols=14  Identities=43%  Similarity=1.058  Sum_probs=12.0

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        12 ~k~~~C~~C~k~F~   25 (26)
T PF13465_consen   12 EKPYKCPYCGKSFS   25 (26)
T ss_dssp             SSSEEESSSSEEES
T ss_pred             CCCCCCCCCcCeeC
Confidence            46999999999884

...

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=84.56  E-value=1.2  Score=28.18  Aligned_cols=20  Identities=15%  Similarity=0.481  Sum_probs=17.1

Q ss_pred             ccccCCCCcEEEEeccCcce
Q 031632          134 PHECPVCSQYFVVSGGSNLI  153 (156)
Q Consensus       134 p~RC~eCG~~FkL~~~~~~~  153 (156)
                      ..+||.||+-+.++..++++
T Consensus        21 ~~~Cp~CG~~~~~~~~~~~v   40 (46)
T PRK00398         21 GVRCPYCGYRILFKERPPVV   40 (46)
T ss_pred             ceECCCCCCeEEEccCCCcc
Confidence            78999999998888887765

>COG5189 SFP1 Putative transcriptional repressor regulating G2/M transition [Transcription / Cell division and chromosome partitioning]

Probab=84.10  E-value=0.45  Score=43.26  Aligned_cols=17  Identities=35%  Similarity=0.778  Sum_probs=15.5

Q ss_pred             eecCCccccCCCCcEEE
Q 031632          129 LEKGKPHECPVCSQYFV  145 (156)
Q Consensus       129 L~kG~p~RC~eCG~~Fk  145 (156)
                      .-|+||+||++||+-||
T Consensus       393 ~~~~KPYrCevC~KRYK  409 (423)
T COG5189         393 SAKDKPYRCEVCDKRYK  409 (423)
T ss_pred             cccCCceeccccchhhc
Confidence            77899999999999887

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	156
2y69_F	129	Bovine Heart Cytochrome C Oxidase Re-Refined With M		2e-09
1occ_F	98	Structure Of Bovine Heart Cytochrome C Oxidase At T		1e-08

>pdb|2Y69|F Chain F, Bovine Heart Cytochrome C Oxidase Re-Refined With Molecular Oxygen Length = 129

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/116 (35%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 30  SIASRSLISR-PLFASRHFSADSGTSVKKRVEDVNPVATGHXXXXXXXXXXGKNILEIDY 88
           ++AS++L +R P   S   S  SG  V    E     ATG           G++   I  
Sbjct: 11  ALASQALRARGPNGVSVVRSMASGGGVPTDEEQ----ATGLEREVMLAARKGQDPYNILA 66
Query: 89  PTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYF 144
           P    GTK+ P +V S  +KRIVGC   E  D   V+WFWL KG+   CP C  ++
Sbjct: 67  PKATSGTKEDPNLVPSITNKRIVGCICEE--DNSTVIWFWLHKGEAQRCPSCGTHY 120

>pdb|1OCC|F Chain F, Structure Of Bovine Heart Cytochrome C Oxidase At The Fully Oxidized State Length = 98

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 30/79 (37%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 66  ATGHXXXXXXXXXXGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG           G++   I  P    GTK+ P +V S  +KRIVGC   E  D   V+
Sbjct: 13  ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCICEE--DNSTVI 70
Query: 126 WFWLEKGKPHECPVCSQYF 144
           WFWL KG+   CP C  ++
Sbjct: 71  WFWLHKGEAQRCPSCGTHY 89

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	156
2y69_F	129	Cytochrome C oxidase subunit 5B; electron transpor	3e-35
1v54_F	98	VI, cytochrome C oxidase polypeptide VB; oxidoredu	3e-33
2odx_A	80	Cytochrome C oxidase polypeptide IV; all beta-prot	1e-24
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	4e-04

>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} Length = 129

 Score =  118 bits (296), Expect = 3e-35
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 2/103 (1%)

Query: 43  ASRHFSADSGTSVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVV 102
                S     +    V      ATG ERE + A  +G++   I  P    GTK+ P +V
Sbjct: 21  GPNGVSVVRSMASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLV 80

Query: 103 KSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFV 145
            S  +KRIVGC     ED   V+WFWL KG+   CP C  ++ 
Sbjct: 81  PSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQRCPSCGTHYK 121

>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ... Length = 98

 Score =  111 bits (280), Expect = 3e-33
 Identities = 35/92 (38%), Positives = 47/92 (51%), Gaps = 2/92 (2%)

Query: 54  SVKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGC 113
           +    V      ATG ERE + A  +G++   I  P    GTK+ P +V S  +KRIVGC
Sbjct: 1   ASGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGC 60

Query: 114 PGGEGEDEHDVVWFWLEKGKPHECPVCSQYFV 145
                ED   V+WFWL KG+   CP C  ++ 
Sbjct: 61  IC--EEDNSTVIWFWLHKGEAQRCPSCGTHYK 90

>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae} Length = 80

 Score = 89.5 bits (222), Expect = 1e-24
 Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 1/53 (1%)

Query: 93  FGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFV 145
            GT   P +++SY D R VGC G      H ++W      +   C  C   + 
Sbjct: 16  KGTMKDPIIIESYDDYRYVGCTGSP-AGSHTIMWLKPTVNEVARCWECGSVYK 67

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi} Length = 67

 Score = 36.2 bits (83), Expect = 4e-04
 Identities = 20/57 (35%), Positives = 24/57 (42%), Gaps = 3/57 (5%)

Query: 95  TKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEK-GKPHECPVCSQYFVVSGGS 150
           T  AP       DK  V C GGEG   H  VW  + +     ECP C   +V+ G  
Sbjct: 2   TIQAPETK--IVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSK 56

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
1v54_F	98	VI, cytochrome C oxidase polypeptide VB; oxidoredu	100.0
2y69_F	129	Cytochrome C oxidase subunit 5B; electron transpor	100.0
2odx_A	80	Cytochrome C oxidase polypeptide IV; all beta-prot	100.0
2jrr_A	67	Uncharacterized protein; solution structure, SIR90	98.79
2jvm_A	80	Uncharacterized protein; alpha+beta, structural ge	98.48
2jz8_A	87	Uncharacterized protein BH09830; zinc binding, str	96.53
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	93.28
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	91.06
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	90.92
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	90.0
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	90.38
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	90.27
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	90.06
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	89.87
1ard_A	29	Yeast transcription factor ADR1; transcription reg	89.34
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	89.1
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.91
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.74
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	88.73
1paa_A	30	Yeast transcription factor ADR1; transcription reg	88.56
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.31
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	88.17
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	88.08
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.82
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	87.6
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.38
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	87.02
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	86.92
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	86.36
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	86.01
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	86.01
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	85.67
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	85.46
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	85.42
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	85.1
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	84.51
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	84.48
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	84.27
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	84.25
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	83.62
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	83.48
1dxg_A	36	Desulforedoxin; non-heme iron protein, rubredoxin	83.12
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	83.11
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.78
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	82.75
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	82.63
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.6
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	82.6
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	82.49
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	82.45
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.36
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	82.04
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	82.01
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	81.94
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	81.85
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.83
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.69
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	81.64
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	81.6
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	81.6
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	81.56
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	81.53
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	81.51
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	81.46
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	81.45
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	81.25
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	81.13
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	81.06
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	80.9
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	80.78
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	80.67
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.61
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	80.26
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	80.24
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	80.2
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	80.19
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	80.01

>1v54_F VI, cytochrome C oxidase polypeptide VB; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: g.41.5.3 PDB: 1oco_F* 1occ_F* 1ocz_F* 1ocr_F* 1v55_F* 2dyr_F* 2dys_F* 2eij_F* 2eik_F* 2eil_F* 2eim_F* 2ein_F* 2occ_F* 2ybb_Q* 2zxw_F* 3abk_F* 3abl_F* 3abm_F* 3ag1_F* 3ag2_F* ...

Probab=100.00  E-value=6.5e-48  Score=285.40  Aligned_cols=93  Identities=38%  Similarity=0.654  Sum_probs=89.6

Q ss_pred             ccccCCCCCccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCcc
Q 031632           56 KKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPH  135 (156)
Q Consensus        56 ~~~vpd~~EqATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p~  135 (156)
                      .|+|||++||||||||+||+|+++|+|||||+++++++|||+|||||||++++|||||+|  ++|+|+|+||||++|+|+
T Consensus         3 ~g~iPtd~eqATGlEr~Ella~~~G~Dpfd~~~~~~~~GTke~P~lVpS~~~~RiVGC~~--~~D~h~v~W~~l~~g~~~   80 (98)
T 1v54_F            3 GGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEAQ   80 (98)
T ss_dssp             CCBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEECSSSEEEEEECC--STTCSCCEEEEEESSSCE
T ss_pred             CCCCCChHHhccCHHHHHHHHHHcCCCcccccCCCCCCCcccCCeEeecCCCCeEEeecC--CCCCceeEEEEEeCCCce
Confidence            578999999999999999999999999999999999999999999999999999999999  479999999999999999


Q ss_pred             ccCCCCcEEEEeccC
Q 031632          136 ECPVCSQYFVVSGGS  150 (156)
Q Consensus       136 RC~eCG~~FkL~~~~  150 (156)
                      |||+||+||||++.+
T Consensus        81 RC~eCG~~fkL~~~~   95 (98)
T 1v54_F           81 RCPSCGTHYKLVPHQ   95 (98)
T ss_dssp             ECTTTCCEEEEECCC
T ss_pred             ECCCCCeEEEEeeec
Confidence            999999999999764

>2y69_F Cytochrome C oxidase subunit 5B; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=100.00  E-value=5.5e-47  Score=292.48  Aligned_cols=94  Identities=37%  Similarity=0.644  Sum_probs=89.3

Q ss_pred             cccccCCCCCccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCc
Q 031632           55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKP  134 (156)
Q Consensus        55 ~~~~vpd~~EqATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p  134 (156)
                      ..|+||||+|||||+||+||+++++|+|||||+++++++|||||||||||++++|||||+|  ++|+|+|+||||++|+|
T Consensus        33 ~~g~iPtd~eqATGlER~ELla~~~G~DpFd~~~~~~~~GTkedP~lVpS~~d~RiVGC~~--~~Dsh~v~Wf~L~kg~p  110 (129)
T 2y69_F           33 SGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEA  110 (129)
T ss_dssp             --CBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEEESSSEEEEEECC--STTCSCCEEEEEESSSC
T ss_pred             CCCCCCCHHHhccCHHHHHHHHHHcCCCccccCCCCCCCCcccCCeEeecCCCCeEEeecC--CCCCceeEEEEEeCCCc
Confidence            4589999999999999999999999999999999999999999999999999999999999  47999999999999999


Q ss_pred             cccCCCCcEEEEeccC
Q 031632          135 HECPVCSQYFVVSGGS  150 (156)
Q Consensus       135 ~RC~eCG~~FkL~~~~  150 (156)
                      +|||+||+||||++.+
T Consensus       111 ~RCpeCG~~fkL~~~e  126 (129)
T 2y69_F          111 QRCPSCGTHYKLVPHQ  126 (129)
T ss_dssp             EECTTTCCEEEEEECC
T ss_pred             eeCCCCCeEEEEeeec
Confidence            9999999999999865

>2odx_A Cytochrome C oxidase polypeptide IV; all beta-protein, metallo-protein, oxidoreductase; NMR {Saccharomyces cerevisiae}

Probab=100.00  E-value=1e-36  Score=218.37  Aligned_cols=72  Identities=21%  Similarity=0.431  Sum_probs=52.4

Q ss_pred             hCCCCCCCCCCC-CCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCccccCCCCcEEEEeccCc
Q 031632           79 EGKNILEIDYPT-GPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGGSN  151 (156)
Q Consensus        79 ~G~DpFd~~~~~-~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p~RC~eCG~~FkL~~~~~  151 (156)
                      +|.|||||++++ +++|||||||||||++++|||||+|+| +|+|+|+||||++|+|+||++||+||||+++..
T Consensus         1 ~G~D~fd~~p~~~~~~GT~e~P~lVpS~~~~RiVGC~g~p-~d~h~v~W~~l~~g~~~RC~eCG~~fkL~~vg~   73 (80)
T 2odx_A            1 MMADVFDTKPLDSSRKGTMKDPIIIESYDDYRYVGCTGSP-AGSHTIMWLKPTVNEVARCWECGSVYKLNPVGV   73 (80)
T ss_dssp             ------------------CCSCSEECCSSSSCCEEESSST-TCCSCCEEECCCTTCEEECSSSCCEEEECCCC-
T ss_pred             CCcCcccccccccCCCCCccCCeEecCCCCCeEEeeeCCC-CCcceEEEEEecCCCCeECCCCCeEEEEEEcCC
Confidence            589999999998 489999999999999999999999986 899999999999999999999999999999863

>2jrr_A Uncharacterized protein; solution structure, SIR90, structural genomics, PSI-2, protein structure initiative; NMR {Silicibacter pomeroyi}

Probab=98.79  E-value=3.7e-09  Score=73.47  Aligned_cols=55  Identities=38%  Similarity=0.671  Sum_probs=46.7

Q ss_pred             CCCCCeeeeccCCceeEeecCCCCCCCcceEEEEe-ecCCccccCCCCcEEEEeccCc
Q 031632           95 TKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL-EKGKPHECPVCSQYFVVSGGSN  151 (156)
Q Consensus        95 Tke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L-~kG~p~RC~eCG~~FkL~~~~~  151 (156)
                      |++.|-+|  ..+.|+|.|.|+.++..|..+|++| .++++..|+.||..|+|+....
T Consensus         2 ~~~ape~i--~v~~r~v~CdGg~g~lgHPrVyl~ld~~~g~~~CpYCg~~f~l~~~~~   57 (67)
T 2jrr_A            2 TIQAPETK--IVDKSRVACDGGEGALGHPRVWLQIPEDTGWVECPYCDCKYVLKGSKA   57 (67)
T ss_dssp             CCCCCEEE--EESSSEEEEEESSTTSEEEEEEEECCTTTSEEEETTTTEEEEETTSGG
T ss_pred             CCCCCceE--EECCCEEEeCCCCCCCCCCEEEEEccCCCCeEECCCCCCEEEECCCcc
Confidence            56778777  4588999999987777999999999 5788999999999999987544

>2jvm_A Uncharacterized protein; alpha+beta, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Rhodobacter sphaeroides 2}

Probab=98.48  E-value=1.4e-07  Score=67.60  Aligned_cols=53  Identities=28%  Similarity=0.537  Sum_probs=44.0

Q ss_pred             CCCCCeeeeccCCceeEeecCCCCCCCcceEEEEe-ecCCccccCCCCcEEEEecc
Q 031632           95 TKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWL-EKGKPHECPVCSQYFVVSGG  149 (156)
Q Consensus        95 Tke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L-~kG~p~RC~eCG~~FkL~~~  149 (156)
                      |.+.|-+|  ..+.|+|.|.|+.++..|-.+|++| .++.+..||.||..|+|+..
T Consensus        15 ~~~apevI--~V~~~~V~CdGg~g~LGHPrVyL~ld~~~g~~~CpYCg~~f~l~~~   68 (80)
T 2jvm_A           15 SIEAPETV--VVSTWKVACDGGEGALGHPRVWLSIPHETGFVECGYCDRRYIHESF   68 (80)
T ss_dssp             CCSCCSEE--EESCSEEEECCCSTTCCCCCEEEECCTTTCEEECSSSSCEEEEHHH
T ss_pred             ccCCCCeE--EECCcEEEcCCCCCCCCCCEEEEEccCCCCeEECCCCCCEEEecCC
Confidence            45666555  3347999999987778999999999 67889999999999999853

>2jz8_A Uncharacterized protein BH09830; zinc binding, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Bartonella henselae str}

Probab=96.53  E-value=0.0017  Score=47.04  Aligned_cols=42  Identities=17%  Similarity=0.366  Sum_probs=35.7

Q ss_pred             ceeEeecCCCCCCCcceEEEEeecCCccccCCCCcEEEEecc
Q 031632          108 KRIVGCPGGEGEDEHDVVWFWLEKGKPHECPVCSQYFVVSGG  149 (156)
Q Consensus       108 ~RiVGC~g~p~eDsh~v~Wf~L~kG~p~RC~eCG~~FkL~~~  149 (156)
                      .|.|.|.|..+.=.|--+|+.|.+.....||.||.-|+++.-
T Consensus        22 ~~~v~CdG~~~plgHPrVyL~i~~~g~~~CpYCg~~y~~~~~   63 (87)
T 2jz8_A           22 VKEFMCVGATQPFDHPHIFIDMGSTDEKICPYCSTLYRYDPS   63 (87)
T ss_dssp             CSEEECCCSSCSSSSSSCEEECTTCCEECCTTTCCEEECCTT
T ss_pred             CcEEEcCCCCCCCCCCEEEEEcCCCCeEECCCCCCEeEcCCC
Confidence            456899996555589999999999889999999999998753

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=93.28  E-value=0.056  Score=37.38  Aligned_cols=35  Identities=20%  Similarity=0.408  Sum_probs=25.5

Q ss_pred             ceeEeecCCCCCCCcceEEEEeec-CCccccCCCCcEEEEeccCc
Q 031632          108 KRIVGCPGGEGEDEHDVVWFWLEK-GKPHECPVCSQYFVVSGGSN  151 (156)
Q Consensus       108 ~RiVGC~g~p~eDsh~v~Wf~L~k-G~p~RC~eCG~~FkL~~~~~  151 (156)
                      |-||||+|.-       .|. ++. .+.+.|| ||..+++++.+-
T Consensus         2 Y~vv~C~C~~-------~~~-~~~~~kT~~C~-CG~~~~~~k~ri   37 (71)
T 1gh9_A            2 YIIFRCDCGR-------ALY-SREGAKTRKCV-CGRTVNVKDRRI   37 (71)
T ss_dssp             EEEEEETTSC-------CEE-EETTCSEEEET-TTEEEECCSSSC
T ss_pred             eEEEECCCCC-------EEE-EcCCCcEEECC-CCCeeeeceEEE
Confidence            5799999842       244 333 4578898 999999887654

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=91.06  E-value=0.086  Score=26.71  Aligned_cols=13  Identities=31%  Similarity=0.886  Sum_probs=11.5

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~k~f~   13 (29)
T 1rik_A            1 YKFACPECPKRFM   13 (29)
T ss_dssp             CCEECSSSSCEES
T ss_pred             CCccCCCCCchhC
Confidence            5889999999985

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.92  E-value=0.11  Score=26.24  Aligned_cols=13  Identities=38%  Similarity=0.961  Sum_probs=11.8

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~~~f~   14 (30)
T 2m0d_A            2 KPYQCDYCGRSFS   14 (30)
T ss_dssp             CCEECTTTCCEES
T ss_pred             cCccCCCCCcccC
Confidence            6899999999986

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=90.00  E-value=0.048  Score=27.43  Aligned_cols=14  Identities=43%  Similarity=0.861  Sum_probs=12.1

Q ss_pred             CccccCCCCcEEEE
Q 031632          133 KPHECPVCSQYFVV  146 (156)
Q Consensus       133 ~p~RC~eCG~~FkL  146 (156)
                      +|+.|++||..|.-
T Consensus         1 kp~~C~~C~k~f~~   14 (26)
T 2lvu_A            1 KPYVCERCGKRFVQ   14 (26)
Confidence            58899999999974

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.38  E-value=0.099  Score=26.71  Aligned_cols=13  Identities=31%  Similarity=0.789  Sum_probs=11.7

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~k~f~   14 (27)
T 2kvg_A            2 APYRCPLCRAGCP   14 (27)
T ss_dssp             CTEEETTTTEEES
T ss_pred             cCcCCCCCCcccC
Confidence            6899999999986

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=90.27  E-value=0.12  Score=26.05  Aligned_cols=13  Identities=38%  Similarity=0.835  Sum_probs=11.7

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~k~f~   14 (27)
T 2kvh_A            2 KPFSCSLCPQRSR   14 (27)
T ss_dssp             CCEECSSSSCEES
T ss_pred             cCccCCCcChhhC
Confidence            6899999999985

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=90.06  E-value=0.077  Score=26.61  Aligned_cols=13  Identities=46%  Similarity=1.106  Sum_probs=11.3

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~~~f~   13 (29)
T 2m0e_A            1 KEHKCPHCDKKFN   13 (29)
T ss_dssp             CCCCCSSCCCCCC
T ss_pred             CCCcCCCCCcccC
Confidence            5889999999885

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=89.87  E-value=0.13  Score=25.75  Aligned_cols=13  Identities=31%  Similarity=0.851  Sum_probs=11.3

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 ~~~~C~~C~k~f~   13 (29)
T 2m0f_A            1 GPLKCRECGKQFT   13 (29)
T ss_dssp             CCEECTTTSCEES
T ss_pred             CCccCCCCCCccC
Confidence            5789999999985

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=89.34  E-value=0.11  Score=26.23  Aligned_cols=13  Identities=31%  Similarity=0.894  Sum_probs=11.2

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~~~f~   13 (29)
T 1ard_A            1 RSFVCEVCTRAFA   13 (29)
T ss_dssp             CCCBCTTTCCBCS
T ss_pred             CCeECCCCCcccC
Confidence            5789999999885

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=89.10  E-value=0.16  Score=25.59  Aligned_cols=13  Identities=38%  Similarity=1.055  Sum_probs=11.7

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         2 k~~~C~~C~k~f~   14 (28)
T 2kvf_A            2 RPYSCSVCGKRFS   14 (28)
T ss_dssp             CSEECSSSCCEES
T ss_pred             cCccCCCCCcccC
Confidence            6899999999986

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.91  E-value=0.19  Score=27.01  Aligned_cols=14  Identities=36%  Similarity=0.833  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2els_A            7 GKIFTCEYCNKVFK   20 (36)
T ss_dssp             CCCEECTTTCCEES
T ss_pred             CCCEECCCCCceeC
Confidence            47899999999995

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.74  E-value=0.19  Score=27.63  Aligned_cols=15  Identities=20%  Similarity=0.410  Sum_probs=12.9

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus         7 ~k~~~C~~C~k~f~~   21 (37)
T 2elm_A            7 GHLYYCSQCHYSSIT   21 (37)
T ss_dssp             SCEEECSSSSCEEEC
T ss_pred             CcCeECCCCCcccCC
Confidence            469999999999974

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=88.73  E-value=0.13  Score=27.83  Aligned_cols=14  Identities=43%  Similarity=0.992  Sum_probs=12.1

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|++|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (37)
T 1p7a_A            9 IKPFQCPDCDRSFS   22 (37)
T ss_dssp             SSSBCCTTTCCCBS
T ss_pred             CCCccCCCCCcccC
Confidence            46999999999885

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=88.56  E-value=0.13  Score=26.20  Aligned_cols=13  Identities=31%  Similarity=0.812  Sum_probs=11.3

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~k~f~   13 (30)
T 1paa_A            1 KAYACGLCNRAFT   13 (30)
T ss_dssp             CCSBCTTTCCBCS
T ss_pred             CCcCCcccCcccC
Confidence            5789999999885

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.31  E-value=0.21  Score=26.67  Aligned_cols=14  Identities=50%  Similarity=0.978  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2elt_A            7 GKPYKCPQCSYASA   20 (36)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCCCCCCCCcccC
Confidence            46999999999995

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=88.17  E-value=0.22  Score=26.27  Aligned_cols=14  Identities=29%  Similarity=0.657  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         5 ~k~~~C~~C~k~f~   18 (35)
T 2elx_A            5 SSGYVCALCLKKFV   18 (35)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeECCCCcchhC
Confidence            46899999999985

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=88.08  E-value=0.22  Score=26.50  Aligned_cols=14  Identities=29%  Similarity=0.840  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         5 ~k~~~C~~C~k~f~   18 (35)
T 1srk_A            5 KRPFVCRICLSAFT   18 (35)
T ss_dssp             CSCEECSSSCCEES
T ss_pred             CcCeeCCCCCcccC
Confidence            46899999999995

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.82  E-value=0.23  Score=26.66  Aligned_cols=14  Identities=36%  Similarity=0.852  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2elq_A            7 GKPFKCSLCEYATR   20 (36)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCccCCCCCchhC
Confidence            47999999999996

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=87.60  E-value=0.1  Score=26.62  Aligned_cols=14  Identities=36%  Similarity=0.933  Sum_probs=11.9

Q ss_pred             CccccCCCCcEEEE
Q 031632          133 KPHECPVCSQYFVV  146 (156)
Q Consensus       133 ~p~RC~eCG~~FkL  146 (156)
                      +|+.|++||..|.-
T Consensus         1 k~~~C~~C~k~f~~   14 (29)
T 2lvt_A            1 KPCQCVMCGKAFTQ   14 (29)
Confidence            57899999999864

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.38  E-value=0.26  Score=26.44  Aligned_cols=14  Identities=29%  Similarity=0.776  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (36)
T 2elv_A            7 GLLYDCHICERKFK   20 (36)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeECCCCCCccC
Confidence            47899999999986

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=87.02  E-value=0.28  Score=26.53  Aligned_cols=15  Identities=40%  Similarity=1.145  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus         7 ~k~~~C~~C~k~f~~   21 (37)
T 2elp_A            7 GRAMKCPYCDFYFMK   21 (37)
T ss_dssp             CCCEECSSSSCEECS
T ss_pred             CCCeECCCCChhhcc
Confidence            468999999999963

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=86.92  E-value=0.16  Score=25.59  Aligned_cols=13  Identities=23%  Similarity=0.452  Sum_probs=11.2

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 k~~~C~~C~k~f~   13 (30)
T 1klr_A            1 KTYQCQYCEFRSA   13 (30)
T ss_dssp             CCCCCSSSSCCCS
T ss_pred             CCccCCCCCCccC
Confidence            5789999999885

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=86.36  E-value=0.2  Score=27.03  Aligned_cols=14  Identities=43%  Similarity=1.129  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         7 ~k~~~C~~C~k~f~   20 (37)
T 2elo_A            7 GRSYSCPVCEKSFS   20 (37)
T ss_dssp             CCCCEETTTTEECS
T ss_pred             CCCcCCCCCCCccC
Confidence            46899999999885

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=86.01  E-value=0.13  Score=27.50  Aligned_cols=13  Identities=31%  Similarity=0.961  Sum_probs=11.2

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 kp~~C~~C~k~f~   13 (32)
T 2kfq_A            1 YAFACPACPKRFM   13 (32)
T ss_dssp             CCSSSSSSCTTHH
T ss_pred             CCCCCCCCCcccC
Confidence            5899999999875

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=86.01  E-value=0.15  Score=25.86  Aligned_cols=14  Identities=36%  Similarity=0.698  Sum_probs=12.0

Q ss_pred             CccccCCCCcEEEE
Q 031632          133 KPHECPVCSQYFVV  146 (156)
Q Consensus       133 ~p~RC~eCG~~FkL  146 (156)
                      +|+.|++||..|.-
T Consensus         2 k~~~C~~C~k~f~~   15 (30)
T 2lvr_A            2 KPYVCIHCQRQFAD   15 (30)
Confidence            68999999999863

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=85.67  E-value=0.19  Score=29.57  Aligned_cols=15  Identities=27%  Similarity=0.432  Sum_probs=13.0

Q ss_pred             cCCccccCCCCcEEE
Q 031632          131 KGKPHECPVCSQYFV  145 (156)
Q Consensus       131 kG~p~RC~eCG~~Fk  145 (156)
                      ..+|+.|++||..|.
T Consensus         5 gekp~~C~~CgK~F~   19 (36)
T 1fv5_A            5 KPARFMCLPCGIAFS   19 (36)
T ss_dssp             SCCCCEETTTTEECS
T ss_pred             CccCeECCCCCCccC
Confidence            457999999999985

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=85.46  E-value=0.37  Score=26.46  Aligned_cols=14  Identities=21%  Similarity=0.634  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         4 ~k~~~C~~C~k~f~   17 (39)
T 1njq_A            4 PRSYTCSFCKREFR   17 (39)
T ss_dssp             SSSEECTTTCCEES
T ss_pred             CCceECCCCCcccC
Confidence            46899999999985

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=85.42  E-value=0.21  Score=26.89  Aligned_cols=13  Identities=31%  Similarity=0.886  Sum_probs=11.3

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         1 kp~~C~~C~k~F~   13 (33)
T 1rim_A            1 YKFACPECPKRFM   13 (33)
T ss_dssp             CCCCCSSSCCCCS
T ss_pred             CcccCCCCCchhC
Confidence            5899999999885

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=85.10  E-value=0.29  Score=26.09  Aligned_cols=14  Identities=43%  Similarity=1.001  Sum_probs=12.1

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         7 ~~~~~C~~C~k~f~   20 (36)
T 2elr_A            7 GKTHLCDMCGKKFK   20 (36)
T ss_dssp             CSSCBCTTTCCBCS
T ss_pred             CCCeecCcCCCCcC
Confidence            46899999999885

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=84.51  E-value=0.42  Score=28.07  Aligned_cols=14  Identities=29%  Similarity=0.895  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|.+||..|.
T Consensus         5 ~kp~~C~~C~k~F~   18 (48)
T 3iuf_A            5 DKPYACDICGKRYK   18 (48)
T ss_dssp             TSCEECTTTCCEES
T ss_pred             CcCEECCCcCcccC
Confidence            47999999999996

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.48  E-value=0.45  Score=26.36  Aligned_cols=14  Identities=43%  Similarity=0.959  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (42)
T 2en2_A            9 EKPYKCETCGARFV   22 (42)
T ss_dssp             SCSEECTTTCCEES
T ss_pred             CCCEeCCCcChhhC
Confidence            46999999999996

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=84.27  E-value=0.44  Score=26.29  Aligned_cols=14  Identities=29%  Similarity=0.686  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         9 ~~~~~C~~C~k~f~   22 (42)
T 2epc_A            9 ETPYLCGQCGKSFT   22 (42)
T ss_dssp             SCCEECSSSCCEES
T ss_pred             CCCeECCCCCcccC
Confidence            46899999999995

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=84.25  E-value=0.45  Score=26.89  Aligned_cols=14  Identities=43%  Similarity=0.985  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (44)
T 2epv_A           10 EKPYECNECGKAFI   23 (44)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCCCCcccC
Confidence            46999999999995

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.62  E-value=0.5  Score=26.09  Aligned_cols=14  Identities=29%  Similarity=0.648  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         8 ~k~~~C~~C~k~f~   21 (41)
T 2ept_A            8 QRVYECQECGKSFR   21 (41)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeECCCCCCCcC
Confidence            46899999999995

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=83.48  E-value=0.52  Score=26.60  Aligned_cols=14  Identities=36%  Similarity=0.807  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2eow_A           10 EKPYKCNECGKAFR   23 (46)
T ss_dssp             CCCEECTTSCCEES
T ss_pred             CCCeeccccCChhc
Confidence            46999999999986

>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A

Probab=83.12  E-value=0.85  Score=27.12  Aligned_cols=26  Identities=31%  Similarity=0.792  Sum_probs=18.9

Q ss_pred             ecCCccccCCCCcEEEEecc--Ccceee
Q 031632          130 EKGKPHECPVCSQYFVVSGG--SNLICC  155 (156)
Q Consensus       130 ~kG~p~RC~eCG~~FkL~~~--~~~~~~  155 (156)
                      .+.+-++|+.||+...+.+.  ..|.||
T Consensus         2 k~~~fY~C~~CGnivev~~~g~~~l~CC   29 (36)
T 1dxg_A            2 NEGDVYKCELCGQVVKVLEEGGGTLVCC   29 (36)
T ss_dssp             CTTCEEECTTTCCEEEEEECCSSCEEET
T ss_pred             CcccEEEcCCCCcEEEEEeCCCcCEEeC
Confidence            35677899999998887443  456665

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=83.11  E-value=0.55  Score=26.34  Aligned_cols=15  Identities=33%  Similarity=0.647  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2emb_A           10 RKRYECSKCQATFNL   24 (44)
T ss_dssp             CSSEECTTTCCEESC
T ss_pred             CCCeECCCCCCccCC
Confidence            468999999999963

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.78  E-value=0.56  Score=26.45  Aligned_cols=14  Identities=36%  Similarity=0.842  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2yts_A           10 EKPYICNECGKSFI   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCEECCCCChhhC
Confidence            46999999999996

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=82.75  E-value=0.57  Score=25.90  Aligned_cols=14  Identities=36%  Similarity=0.833  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         8 ~k~~~C~~C~k~f~   21 (42)
T 2el5_A            8 ENPYECSECGKAFN   21 (42)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCccCCCcChhhC
Confidence            46899999999996

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.63  E-value=0.41  Score=26.44  Aligned_cols=14  Identities=36%  Similarity=0.826  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (42)
T 2ytb_A            9 EKPYRCDQCGKAFS   22 (42)
T ss_dssp             CCSBCCTTTTCCBS
T ss_pred             CCCeeCCCccchhC
Confidence            46999999999885

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.60  E-value=0.57  Score=26.51  Aligned_cols=14  Identities=29%  Similarity=0.797  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~F~   23 (46)
T 2emi_A           10 ERHYECSECGKAFI   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCCCCCCCCcccC
Confidence            46899999999996

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.60  E-value=0.57  Score=26.28  Aligned_cols=15  Identities=27%  Similarity=0.817  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2yu5_A           10 ENPFKCSKCDRVFTQ   24 (44)
T ss_dssp             CCSEECSSSSCEESS
T ss_pred             CCCeECCCCCchhCC
Confidence            469999999999963

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.49  E-value=0.62  Score=25.92  Aligned_cols=15  Identities=40%  Similarity=0.797  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (44)
T 2eof_A           10 EKPYECNECQKAFNT   24 (44)
T ss_dssp             CCSEECTTTCCEESC
T ss_pred             CCCeECCCCCcccCC
Confidence            468999999999963

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=82.45  E-value=0.51  Score=30.18  Aligned_cols=13  Identities=23%  Similarity=0.810  Sum_probs=9.8

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         3 Kpy~C~~C~k~F~   15 (60)
T 4gzn_C            3 RPFFCNFCGKTYR   15 (60)
T ss_dssp             CCEECTTTCCEES
T ss_pred             CCccCCCCCCEeC
Confidence            6777888887774

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.36  E-value=0.59  Score=26.53  Aligned_cols=14  Identities=29%  Similarity=0.726  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2ytp_A           10 ERHYECSECGKAFA   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeECCcCCcccC
Confidence            47999999999996

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.04  E-value=0.62  Score=26.25  Aligned_cols=14  Identities=43%  Similarity=0.935  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2ytf_A           10 EKPFECSECQKAFN   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCcCCCCCCcccC
Confidence            57999999999995

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=82.01  E-value=0.63  Score=26.34  Aligned_cols=14  Identities=36%  Similarity=0.864  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2ep3_A           10 EKPYRCAECGKAFT   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeECCCCCchhC
Confidence            46999999999996

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.94  E-value=0.63  Score=26.23  Aligned_cols=14  Identities=36%  Similarity=0.821  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~f~   23 (46)
T 2yrj_A           10 EKPYRCGECGKAFA   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCeECCCCCCccC
Confidence            46899999999996

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.85  E-value=0.53  Score=26.39  Aligned_cols=15  Identities=27%  Similarity=0.614  Sum_probs=12.7

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~~~~~C~~C~k~F~~   24 (44)
T 2eox_A           10 SKSYNCNECGKAFTR   24 (44)
T ss_dssp             CCCEEETTTTEEESS
T ss_pred             CCCeECcccCcccCC
Confidence            469999999999863

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=81.83  E-value=0.61  Score=26.49  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2em4_A           10 QRPYECIECGKAFK   23 (46)
T ss_dssp             SSSEECSSSCCEES
T ss_pred             CcCcCCCCCCCccC
Confidence            46999999999996

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=81.69  E-value=0.63  Score=26.41  Aligned_cols=14  Identities=43%  Similarity=0.973  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2emj_A           10 EKPFECAECGKSFS   23 (46)
T ss_dssp             CCSEECSSSSCEES
T ss_pred             CCCEECCCCCcccC
Confidence            46999999999996

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.64  E-value=0.66  Score=26.25  Aligned_cols=14  Identities=36%  Similarity=0.859  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2en3_A           10 EKPFQCKECGMNFS   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CCCeeCcccChhhC
Confidence            47999999999996

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.60  E-value=0.49  Score=26.10  Aligned_cols=14  Identities=36%  Similarity=0.840  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         8 ~k~~~C~~C~k~f~   21 (42)
T 2yte_A            8 EKPYSCAECKETFS   21 (42)
T ss_dssp             CCSCBCTTTCCBCS
T ss_pred             CCCeECCCCCCccC
Confidence            46999999999885

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.60  E-value=0.55  Score=26.68  Aligned_cols=15  Identities=47%  Similarity=1.008  Sum_probs=12.7

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2eoz_A           10 EKPYSCNVCGKAFVL   24 (46)
T ss_dssp             CCSEEETTTTEEESS
T ss_pred             CCCeECcccChhhCC
Confidence            469999999999963

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.56  E-value=0.66  Score=26.23  Aligned_cols=14  Identities=57%  Similarity=1.087  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~F~   23 (46)
T 2em3_A           10 EKPYECKVCSKAFT   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCCCCcccC
Confidence            46999999999996

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.53  E-value=0.65  Score=26.38  Aligned_cols=15  Identities=40%  Similarity=0.846  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2emf_A           10 GKHFECTECGKAFTR   24 (46)
T ss_dssp             SCCEECSSSCCEESC
T ss_pred             CCCeECCCCCchhCC
Confidence            579999999999963

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.51  E-value=0.56  Score=26.53  Aligned_cols=14  Identities=43%  Similarity=0.937  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (45)
T 2epu_A           10 QKPFECTHCGKSFR   23 (45)
T ss_dssp             CCSEEETTTTEEES
T ss_pred             CcCccCCCCCCccC
Confidence            47899999999996

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.46  E-value=0.42  Score=26.75  Aligned_cols=14  Identities=36%  Similarity=0.804  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (44)
T 2eoj_A           10 ENPYECCECGKVFS   23 (44)
T ss_dssp             CCSCEETTTTEECS
T ss_pred             CcCeeCCCCCCccC
Confidence            46999999999886

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.45  E-value=0.7  Score=26.12  Aligned_cols=14  Identities=36%  Similarity=0.828  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2eq0_A           10 EKPYKCHECGKVFR   23 (46)
T ss_dssp             CCCEECTTTCCEES
T ss_pred             CCCeECCCCCchhC
Confidence            46999999999996

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=81.25  E-value=0.39  Score=23.76  Aligned_cols=12  Identities=33%  Similarity=0.930  Sum_probs=9.6

Q ss_pred             ccccCCCCcEEE
Q 031632          134 PHECPVCSQYFV  145 (156)
Q Consensus       134 p~RC~eCG~~Fk  145 (156)
                      |+.|++||..|.
T Consensus         1 ~~~C~~C~k~f~   12 (27)
T 1znf_A            1 XYKCGLCERSFV   12 (27)
T ss_dssp             -CBCSSSCCBCS
T ss_pred             CccCCCCCCcCC
Confidence            578999999885

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=81.13  E-value=0.7  Score=26.02  Aligned_cols=14  Identities=36%  Similarity=0.814  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2em9_A           10 EKPYNCKECGKSFR   23 (46)
T ss_dssp             CCSEECSSSCCEES
T ss_pred             CcCeECCccccccC
Confidence            46999999999996

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=81.06  E-value=0.69  Score=26.16  Aligned_cols=14  Identities=36%  Similarity=0.826  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2emy_A           10 ENPYECHECGKAFS   23 (46)
T ss_dssp             SCCEECSSSCCEES
T ss_pred             CcCcCCCCCCcccC
Confidence            47999999999996

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.90  E-value=0.7  Score=26.22  Aligned_cols=14  Identities=29%  Similarity=0.634  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2eoy_A           10 EKCFKCNKCEKTFS   23 (46)
T ss_dssp             SCCEECSSSCCEES
T ss_pred             CCCEECcCCCCcCC
Confidence            46999999999996

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=80.78  E-value=0.49  Score=26.28  Aligned_cols=14  Identities=36%  Similarity=0.868  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus         9 ~k~~~C~~C~k~f~   22 (42)
T 2eos_A            9 EKPYPCEICGTRFR   22 (42)
T ss_dssp             SCCBCCSSSCCCBS
T ss_pred             CCCEECCCCCCccC
Confidence            46999999999886

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=80.67  E-value=0.73  Score=27.31  Aligned_cols=14  Identities=29%  Similarity=0.878  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        22 ~k~~~C~~C~k~f~   35 (54)
T 1yui_A           22 EQPATCPICYAVIR   35 (54)
T ss_dssp             SCCEECTTTCCEES
T ss_pred             CCCccCCCCCcccC
Confidence            46899999999985

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.61  E-value=0.52  Score=26.87  Aligned_cols=14  Identities=43%  Similarity=0.949  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2eon_A           10 EKPYKCQVCGKAFR   23 (46)
T ss_dssp             CCSCBCSSSCCBCS
T ss_pred             CcccCCCCCCcccC
Confidence            47999999999986

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.26  E-value=0.76  Score=25.97  Aligned_cols=15  Identities=33%  Similarity=0.789  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~f~~   24 (46)
T 2yu8_A           10 EKPYKCNECGKVFTQ   24 (46)
T ss_dssp             CSSEECSSSCCEESS
T ss_pred             CCCeECCcCCchhCC
Confidence            568999999999963

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.24  E-value=0.78  Score=26.01  Aligned_cols=14  Identities=36%  Similarity=0.861  Sum_probs=12.4

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~f~   23 (46)
T 2yto_A           10 EKPYKCSDCGKAFT   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCEECcccCCccC
Confidence            46999999999996

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.20  E-value=0.79  Score=26.00  Aligned_cols=14  Identities=29%  Similarity=0.736  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~k~~~C~~C~k~F~   23 (46)
T 2eoo_A           10 ERPYGCNECGKNFG   23 (46)
T ss_dssp             CCCEECSSSCCEES
T ss_pred             CCCEEccccCcccC
Confidence            46999999999996

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.19  E-value=0.83  Score=25.72  Aligned_cols=14  Identities=36%  Similarity=0.930  Sum_probs=12.3

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||..|.
T Consensus        10 ~~~~~C~~C~k~f~   23 (46)
T 2eor_A           10 EKPYNCEECGKAFI   23 (46)
T ss_dssp             CCSEECTTTCCEES
T ss_pred             CcCccCCCCCCCcC
Confidence            46899999999996

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=80.01  E-value=0.81  Score=25.76  Aligned_cols=15  Identities=33%  Similarity=0.782  Sum_probs=12.7

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|++||..|.-
T Consensus        10 ~k~~~C~~C~k~F~~   24 (46)
T 2epw_A           10 EKPCKCTECGKAFCW   24 (46)
T ss_dssp             CCSEECSSSCCEESS
T ss_pred             CCCeeCCCCCCccCC
Confidence            468999999999963

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	156
d1v54f_	98	g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow	1e-36

>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]} Length = 98

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Cytochrome c oxidase Subunit F
domain: Cytochrome c oxidase Subunit F
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  119 bits (300), Expect = 1e-36
 Identities = 34/80 (42%), Positives = 45/80 (56%), Gaps = 2/80 (2%)

Query: 66  ATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVV 125
           ATG ERE + A  +G++   I  P    GTK+ P +V S  +KRIVGC     ED   V+
Sbjct: 13  ATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVI 70

Query: 126 WFWLEKGKPHECPVCSQYFV 145
           WFWL KG+   CP C  ++ 
Sbjct: 71  WFWLHKGEAQRCPSCGTHYK 90

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1v54f_	98	Cytochrome c oxidase Subunit F {Cow (Bos taurus) [	100.0
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	94.85
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	91.9
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	90.61
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	90.27
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.66
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	89.54
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	88.97
d1dxga_	36	Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}	88.81
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	88.54
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	88.46
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	87.9
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	86.59
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	85.76
d1vzia2	37	Desulfoferrodoxin N-terminal domain {Desulfoarculu	81.23
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	80.37

>d1v54f_ g.41.5.3 (F:) Cytochrome c oxidase Subunit F {Cow (Bos taurus) [TaxId: 9913]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Cytochrome c oxidase Subunit F
domain: Cytochrome c oxidase Subunit F
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=3.1e-49  Score=291.09  Aligned_cols=94  Identities=37%  Similarity=0.644  Sum_probs=90.2

Q ss_pred             cccccCCCCCccchHHHHHHHHHHhCCCCCCCCCCCCCCCCCCCCeeeeccCCceeEeecCCCCCCCcceEEEEeecCCc
Q 031632           55 VKKRVEDVNPVATGHEREELEAELEGKNILEIDYPTGPFGTKDAPAVVKSYYDKRIVGCPGGEGEDEHDVVWFWLEKGKP  134 (156)
Q Consensus        55 ~~~~vpd~~EqATGlER~ELla~~~G~DpFd~~~~~~~~GTke~P~lVpS~~~~RiVGC~g~p~eDsh~v~Wf~L~kG~p  134 (156)
                      ..|+||||+||||||||+||+|+++|+|||||+++++++||||||+||||++++|||||+|  ++|+|+|+||||++|+|
T Consensus         2 ~~g~iptd~EqATGlEr~ella~~~g~D~fd~~~~~~~~GTke~P~lVpS~~~~RiVGC~~--~~D~h~v~W~~l~~g~p   79 (98)
T d1v54f_           2 SGGGVPTDEEQATGLEREVMLAARKGQDPYNILAPKATSGTKEDPNLVPSITNKRIVGCIC--EEDNSTVIWFWLHKGEA   79 (98)
T ss_dssp             CCCBCCCHHHHCCHHHHHHHHHHHTTCCTTCCSCCCCCCCCSSSCEEEECSSSEEEEEECC--STTCSCCEEEEEESSSC
T ss_pred             CCCcCCChHHHhhhHHHHHHHHHhcCCChhhccCCcCCCCCCcCCcEecCCCCceEEeecC--CCCCceeEEEEEeCCCC
Confidence            4689999999999999999999999999999999999999999999999999999999999  47999999999999999


Q ss_pred             cccCCCCcEEEEeccC
Q 031632          135 HECPVCSQYFVVSGGS  150 (156)
Q Consensus       135 ~RC~eCG~~FkL~~~~  150 (156)
                      +||++||+||||++.+
T Consensus        80 ~RC~eCG~~fkL~~~~   95 (98)
T d1v54f_          80 QRCPSCGTHYKLVPHQ   95 (98)
T ss_dssp             EECTTTCCEEEEECCC
T ss_pred             cccCCCCcEEEEeecc
Confidence            9999999999999764

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0047  Score=34.17  Aligned_cols=13  Identities=38%  Similarity=0.879  Sum_probs=11.9

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      ||++|.|||..|.
T Consensus         1 KPy~C~eCgK~F~   13 (26)
T d1x6ea2           1 KPYKCLECGKAFS   13 (26)
T ss_dssp             CCEECSSSCCEES
T ss_pred             CCccCCCCcCeec
Confidence            6999999999995

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.90  E-value=0.03  Score=30.97  Aligned_cols=13  Identities=38%  Similarity=1.083  Sum_probs=12.1

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||..|.
T Consensus         2 KPy~C~~C~k~F~   14 (28)
T d1a1ia2           2 KPFQCRICMRNFS   14 (28)
T ss_dssp             CCEECTTTCCEES
T ss_pred             cCccCCCCcCEec
Confidence            7999999999996

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.61  E-value=0.035  Score=32.19  Aligned_cols=15  Identities=20%  Similarity=0.609  Sum_probs=13.0

Q ss_pred             cCCccccCCCCcEEE
Q 031632          131 KGKPHECPVCSQYFV  145 (156)
Q Consensus       131 kG~p~RC~eCG~~Fk  145 (156)
                      ..+|+.|++||..|.
T Consensus         9 ~ekpy~C~~CgK~F~   23 (38)
T d2cota2           9 ERRRYKCDECGKSFS   23 (38)
T ss_dssp             CSCSSBCSSSCCBCS
T ss_pred             CCCCEecCCCCceee
Confidence            357999999999986

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.27  E-value=0.057  Score=30.76  Aligned_cols=15  Identities=33%  Similarity=0.667  Sum_probs=12.9

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|.+||.-|.-
T Consensus         5 ekpy~C~~Cgk~F~~   19 (33)
T d1x6ea1           5 EKPYGCVECGKAFSR   19 (33)
T ss_dssp             CCCEECSSSCCEESS
T ss_pred             CCCeeCCCCCCEeCc
Confidence            479999999999963

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.66  E-value=0.028  Score=32.18  Aligned_cols=16  Identities=44%  Similarity=0.901  Sum_probs=13.9

Q ss_pred             CccccCCCCcEEEEec
Q 031632          133 KPHECPVCSQYFVVSG  148 (156)
Q Consensus       133 ~p~RC~eCG~~FkL~~  148 (156)
                      ||+.||.|+|-||-++
T Consensus         2 kp~~cpic~qrfkrkd   17 (32)
T d2epqa1           2 KPYSCPVCGLRFKRKD   17 (32)
T ss_dssp             CSSEETTTTEECSCHH
T ss_pred             CCcccchHHHHhhccc
Confidence            7999999999998553

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.54  E-value=0.064  Score=31.54  Aligned_cols=15  Identities=40%  Similarity=0.811  Sum_probs=13.3

Q ss_pred             cCCccccCCCCcEEE
Q 031632          131 KGKPHECPVCSQYFV  145 (156)
Q Consensus       131 kG~p~RC~eCG~~Fk  145 (156)
                      -++|+.|.+||..|.
T Consensus         2 ~~Kpy~C~~Cgk~F~   16 (39)
T d2epsa1           2 VGKPYICQSCGKGFS   16 (39)
T ss_dssp             SSCCEECSSSCCEES
T ss_pred             CCCCccCCCCCCCcC
Confidence            378999999999995

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.97  E-value=0.075  Score=30.52  Aligned_cols=14  Identities=43%  Similarity=0.916  Sum_probs=12.3

Q ss_pred             CccccCCCCcEEEE
Q 031632          133 KPHECPVCSQYFVV  146 (156)
Q Consensus       133 ~p~RC~eCG~~FkL  146 (156)
                      +|+.|++||.-|.-
T Consensus         7 kP~~C~~C~k~F~~   20 (36)
T d2ct1a2           7 KPYECYICHARFTQ   20 (36)
T ss_dssp             CSEECTTTCCEESC
T ss_pred             CCEeCCCCcccccc
Confidence            69999999999953

>d1dxga_ g.41.5.2 (A:) Desulforedoxin {Desulfovibrio gigas [TaxId: 879]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulforedoxin
species: Desulfovibrio gigas [TaxId: 879]

Probab=88.81  E-value=0.15  Score=30.03  Aligned_cols=26  Identities=31%  Similarity=0.792  Sum_probs=21.6

Q ss_pred             ecCCccccCCCCcEEEEeccC--cceee
Q 031632          130 EKGKPHECPVCSQYFVVSGGS--NLICC  155 (156)
Q Consensus       130 ~kG~p~RC~eCG~~FkL~~~~--~~~~~  155 (156)
                      ++|+.++|..||+.-.+.+..  .|.||
T Consensus         2 ~~~evYkC~~CGNiVeV~~~g~G~LvCC   29 (36)
T d1dxga_           2 NEGDVYKCELCGQVVKVLEEGGGTLVCC   29 (36)
T ss_dssp             CTTCEEECTTTCCEEEEEECCSSCEEET
T ss_pred             CcccEEEeccCCcEEEEEECCCceEEEC
Confidence            478899999999998887764  67777

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=88.54  E-value=0.059  Score=29.78  Aligned_cols=13  Identities=31%  Similarity=0.894  Sum_probs=11.7

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|+.|++||.-|.
T Consensus         1 kp~~C~~C~k~F~   13 (29)
T d2adra1           1 RSFVCEVCTRAFA   13 (29)
T ss_dssp             CCBCCTTTCCCBS
T ss_pred             CcCCCCCCCCCCC
Confidence            6999999999885

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.46  E-value=0.08  Score=30.47  Aligned_cols=13  Identities=31%  Similarity=0.932  Sum_probs=12.1

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      +|++|++||.-|.
T Consensus         6 kPy~C~~C~k~F~   18 (35)
T d1srka_           6 RPFVCRICLSAFT   18 (35)
T ss_dssp             SCEECSSSCCEES
T ss_pred             ccccCCCCCCccc
Confidence            7999999999996

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.90  E-value=0.091  Score=30.06  Aligned_cols=15  Identities=33%  Similarity=0.729  Sum_probs=12.8

Q ss_pred             CCccccCCCCcEEEE
Q 031632          132 GKPHECPVCSQYFVV  146 (156)
Q Consensus       132 G~p~RC~eCG~~FkL  146 (156)
                      .+|+.|.+||..|..
T Consensus         6 ekPy~C~~C~k~F~~   20 (36)
T d1x6ha2           6 EKPYACSHCDKTFRQ   20 (36)
T ss_dssp             CCCEECSSSSCEESS
T ss_pred             CCCEECCCCCCCcCC
Confidence            469999999999963

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.59  E-value=0.081  Score=29.26  Aligned_cols=13  Identities=38%  Similarity=1.022  Sum_probs=11.7

Q ss_pred             CccccCCCCcEEE
Q 031632          133 KPHECPVCSQYFV  145 (156)
Q Consensus       133 ~p~RC~eCG~~Fk  145 (156)
                      ||+.|++||.-|.
T Consensus         1 Kpy~C~~C~k~F~   13 (29)
T d1sp1a_           1 KKFACPECPKRFM   13 (29)
T ss_dssp             CCSCCTTTTCCCS
T ss_pred             CCEECCcCCCeec
Confidence            6899999999885

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.76  E-value=0.1  Score=29.97  Aligned_cols=14  Identities=43%  Similarity=0.992  Sum_probs=12.2

Q ss_pred             CCccccCCCCcEEE
Q 031632          132 GKPHECPVCSQYFV  145 (156)
Q Consensus       132 G~p~RC~eCG~~Fk  145 (156)
                      .+|+.|++||.-|.
T Consensus         9 eKPy~C~~C~k~F~   22 (37)
T d1p7aa_           9 IKPFQCPDCDRSFS   22 (37)
T ss_dssp             SSSBCCTTTCCCBS
T ss_pred             ccCeEeCCCCCEec
Confidence            46999999999885

>d1vzia2 g.41.5.2 (A:1-37) Desulfoferrodoxin N-terminal domain {Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Desulforedoxin
domain: Desulfoferrodoxin N-terminal domain
species: Desulfoarculus baarsii (Desulfovibrio baarsii) [TaxId: 887]

Probab=81.23  E-value=0.55  Score=27.58  Aligned_cols=26  Identities=35%  Similarity=0.830  Sum_probs=20.7

Q ss_pred             ecCCccccCCCCcEEEEeccC--cceee
Q 031632          130 EKGKPHECPVCSQYFVVSGGS--NLICC  155 (156)
Q Consensus       130 ~kG~p~RC~eCG~~FkL~~~~--~~~~~  155 (156)
                      ++.+.++|..||+.-.+.+..  .|.||
T Consensus         2 ~~~evYkC~~CGNiVeV~~~g~G~LvCC   29 (37)
T d1vzia2           2 ERLQVYKCEVCGNIVEVLNGGIGELVCC   29 (37)
T ss_dssp             CTTCEEECTTTCCEEEEEECCSSCEEET
T ss_pred             ccccEEEecccCcEEEEEECCCccEEEC
Confidence            346789999999998887764  67777

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.37  E-value=0.19  Score=27.35  Aligned_cols=13  Identities=46%  Similarity=1.180  Sum_probs=11.2

Q ss_pred             ccccCCCCcEEEE
Q 031632          134 PHECPVCSQYFVV  146 (156)
Q Consensus       134 p~RC~eCG~~FkL  146 (156)
                      |+.|+.||..|--
T Consensus         1 phkc~~c~kcfsr   13 (26)
T d2dmda2           1 PHKCEVCGKCFSR   13 (26)
T ss_dssp             CCCBTTTTBCCCC
T ss_pred             CCccchhhhHhcc
Confidence            7899999999853