Citrus Sinensis ID: 031659

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-----
Protein Sequence
MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Secondary Structure (PSIPRED)
cccccccHHHHHHcccccccccccEEcccccHHHHHcccHHHHHHHccHHHHHcccccccccHHHHHHHHHHHHHHcccccccccEEEcccccEEcccccccEEEEEccccccEEEEcccccEEccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHccccccEEEEEccccHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccccccccHEHccccEEEEcHHHccEEEEEcccEEEEEEEEccHHHcccccEEEcccccccccccccccccccEEccc
Coil and Loop (DISEMBL)
MADVETGVAagaaagqpkkrtfkkfsfrgvdldalLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAkreappgekpepvrtHLRNMIIVPEMIGSIIGvyngktfnqveikpeMIGHYLAEFsisykpvkhgrpgigathssrfiplk
Flexible Loop (DISEMBL)
madvetgvaagaaagqpkkrtfkkFSFRGVDLDALLDMSTDELAKLFSARARrrfqrglkrkpmalikklrkakreappgekpepvrthLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHgrpgigathssrfiplk
Low Complexity Region (SEG)
MADVETGVaagaaagQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered region (IsUnstruct)
*********************FKKFSFRGVDLDALLDMSTDELAKLFS***************************************THLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKH*****************
Disordered Region (DISOPRED)
**********************KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKL***************VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISEMBL)
*****************KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKK**************EPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Disordered Region (DISPRO)
*****************KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS*R*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	155	2.2.26 [Sep-21-2011]
Q945U1	153	40S ribosomal protein S15	N/A	no	0.987	1.0	0.903	7e-76
P31674	154	40S ribosomal protein S15	yes	no	0.980	0.987	0.891	2e-75
O65059	151	40S ribosomal protein S15	N/A	no	0.954	0.980	0.883	2e-73
Q9FY65	150	40S ribosomal protein S15	yes	no	0.967	1.0	0.851	3e-69
Q9FY64	152	40S ribosomal protein S15	no	no	0.980	1.0	0.896	1e-68
Q08112	152	40S ribosomal protein S15	no	no	0.980	1.0	0.896	1e-68
Q9FY66	152	40S ribosomal protein S15	no	no	0.980	1.0	0.8	2e-66
P34737	152	40S ribosomal protein S15	yes	no	0.941	0.960	0.760	4e-62
Q9FIX6	149	40S ribosomal protein S15	no	no	0.929	0.966	0.875	2e-61
P62845	145	40S ribosomal protein S15	yes	no	0.929	0.993	0.763	5e-56

>sp|Q945U1|RS15_ELAOL 40S ribosomal protein S15 OS=Elaeis oleifera GN=RPS15 PE=2 SV=1

 Score =  282 bits (721), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 140/155 (90%), Positives = 143/155 (92%), Gaps = 2/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADV   V  G A  QPKKRTF+KFS+RGVDLD LLDM TDEL KLF ARARRRFQRGLK
Sbjct: 1   MADVSDAVDVGGA--QPKKRTFRKFSYRGVDLDQLLDMGTDELVKLFHARARRRFQRGLK 58

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKR+APPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 59  RKPMALIKKLRKAKRDAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 118

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 119 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Elaeis oleifera (taxid: 80265)

>sp|P31674|RS15_ORYSJ 40S ribosomal protein S15 OS=Oryza sativa subsp. japonica GN=RPS15 PE=2 SV=2

 Score =  280 bits (716), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 140/157 (89%), Positives = 148/157 (94%), Gaps = 5/157 (3%)

Query: 1   MADVE--TGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRG 58
           MADVE  T VAAGA   QPKKRTF+K+S+RGVDLDALLDMSTD+L +LF ARARRRFQRG
Sbjct: 1   MADVEVETEVAAGA---QPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRG 57

Query: 59  LKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIK 118
           LKRKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIK
Sbjct: 58  LKRKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIK 117

Query: 119 PEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           PEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 PEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O65059|RS15_PICMA 40S ribosomal protein S15 OS=Picea mariana GN=RPS15 PE=2 SV=1

 Score =  273 bits (699), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/154 (88%), Positives = 142/154 (92%), Gaps = 6/154 (3%)

Query: 2   ADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKR 61
           ADV+ G        QPKKRTFKKFS+RGVDLDALLDM+++EL KLF ARARRRFQRGLKR
Sbjct: 4   ADVDVGPV------QPKKRTFKKFSYRGVDLDALLDMTSEELVKLFHARARRRFQRGLKR 57

Query: 62  KPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 121
           +PMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM
Sbjct: 58  QPMALIKKLRKAKREAPSGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEM 117

Query: 122 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 IGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Picea mariana (taxid: 3335)

>sp|Q9FY65|RS153_ARATH 40S ribosomal protein S15-3 OS=Arabidopsis thaliana GN=RPS15C PE=2 SV=1

 Score =  260 bits (664), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 132/155 (85%), Positives = 137/155 (88%), Gaps = 5/155 (3%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MAD E      AAAG  KKRTFKKFSFRGVDLDALLDMSTD+L KLF +R RRRF RGL 
Sbjct: 1   MADPEV-----AAAGIVKKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLT 55

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK EAP GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 56  RKPMALIKKLRKAKIEAPAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 115

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 116 MIGHYLAEFSISYKPVKHGRPGVGATNSSRFIPLK 150

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY64|RS154_ARATH 40S ribosomal protein S15-4 OS=Arabidopsis thaliana GN=RPS15D PE=2 SV=1

 Score =  258 bits (659), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 144/155 (92%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVE  VAA   AG PKKRTFKKF+F+GVDLDALLDMSTD+L KLFS+R RRRF RGL 
Sbjct: 1   MADVEPEVAA---AGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q08112|RS151_ARATH 40S ribosomal protein S15-1 OS=Arabidopsis thaliana GN=RPS15A PE=1 SV=1

 Score =  258 bits (659), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 139/155 (89%), Positives = 144/155 (92%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVE  VAA   AG PKKRTFKKF+F+GVDLDALLDMSTD+L KLFS+R RRRF RGL 
Sbjct: 1   MADVEPEVAA---AGVPKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FY66|RS152_ARATH 40S ribosomal protein S15-2 OS=Arabidopsis thaliana GN=RPS15B PE=2 SV=1

 Score =  250 bits (639), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 124/155 (80%), Positives = 137/155 (88%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MA+VE  V+A A A   KKRTFKKFSF+GVDLDALLDM TD+L +LF +R RRR  RGL 
Sbjct: 1   MAEVEPDVSAAALA---KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLT 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPE
Sbjct: 58  RKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

Arabidopsis thaliana (taxid: 3702)

>sp|P34737|RS15_PODAS 40S ribosomal protein S15 OS=Podospora anserina GN=RPS15 PE=3 SV=1

 Score =  236 bits (602), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 111/146 (76%), Positives = 129/146 (88%)

Query: 10  AGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKK 69
           A  AA   KKRTF+KFS+RGVDLDALLD+++DEL  +  ARARR+  RGLKR+PM LIKK
Sbjct: 7   AEEAAELKKKRTFRKFSYRGVDLDALLDLTSDELRDVVHARARRKINRGLKRRPMGLIKK 66

Query: 70  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 129
           LRKAK+EA P EKP+ V+THLR+MI+VPEMIGS++G+Y+GK FNQVEIKPEM+GHYL EF
Sbjct: 67  LRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVVGIYSGKEFNQVEIKPEMVGHYLGEF 126

Query: 130 SISYKPVKHGRPGIGATHSSRFIPLK 155
           SISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 127 SISYKPVKHGRPGIGATHSSRFIPLK 152

Podospora anserina (taxid: 5145)

>sp|Q9FIX6|RS155_ARATH 40S ribosomal protein S15-5 OS=Arabidopsis thaliana GN=RPS15E PE=3 SV=1

 Score =  234 bits (597), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/144 (87%), Positives = 131/144 (90%)

Query: 12  AAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLR 71
            AAG  KKRTFKKFSFRGVDLDALLDMS ++L K FS+R RRRF RGL RKPMALIKKLR
Sbjct: 6   VAAGIVKKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLR 65

Query: 72  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131
           KAK EAP GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI
Sbjct: 66  KAKMEAPAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 125

Query: 132 SYKPVKHGRPGIGATHSSRFIPLK 155
           SYKPVKHGRPG+GAT+SSRFIPLK
Sbjct: 126 SYKPVKHGRPGVGATNSSRFIPLK 149

Arabidopsis thaliana (taxid: 3702)

>sp|P62845|RS15_RAT 40S ribosomal protein S15 OS=Rattus norvegicus GN=Rps15 PE=1 SV=2

 Score =  216 bits (550), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 110/144 (76%), Positives = 129/144 (89%)

Query: 12  AAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLR 71
           A   Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LR
Sbjct: 2   AEVEQKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLR 61

Query: 72  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131
           KAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI
Sbjct: 62  KAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSI 121

Query: 132 SYKPVKHGRPGIGATHSSRFIPLK 155
           +YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 122 TYKPVKHGRPGIGATHSSRFIPLK 145

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
224062213	152	predicted protein [Populus trichocarpa]	0.980	1.0	0.948	7e-78
313586481	151	40S ribosomal protein S15D [Hevea brasil	0.974	1.0	0.954	8e-78
255551941	151	40S ribosomal protein S15, putative [Ric	0.974	1.0	0.941	1e-77
223469631	151	40S ribosomal protein S15-like protein [	0.974	1.0	0.948	2e-77
118483089	152	unknown [Populus trichocarpa]	0.980	1.0	0.941	3e-77
224107915	152	predicted protein [Populus trichocarpa]	0.980	1.0	0.941	4e-77
313586483	151	40S ribosomal protein S15E [Hevea brasil	0.974	1.0	0.941	5e-77
255559955	152	40S ribosomal protein S15, putative [Ric	0.980	1.0	0.935	1e-76
388507654	151	unknown [Lotus japonicus]	0.974	1.0	0.941	1e-76
388506830	153	unknown [Lotus japonicus]	0.987	1.0	0.941	2e-76

>gi|224062213|ref|XP_002300796.1| predicted protein [Populus trichocarpa] gi|118484748|gb|ABK94243.1| unknown [Populus trichocarpa] gi|118485182|gb|ABK94452.1| unknown [Populus trichocarpa] gi|118488047|gb|ABK95844.1| unknown [Populus trichocarpa] gi|222842522|gb|EEE80069.1| predicted protein [Populus trichocarpa]

 Score =  294 bits (753), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 147/155 (94%), Positives = 148/155 (95%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VAA   AGQPKKRTFKKFSFRGVDLDALLDMSTDEL KLF ARARRRFQRGLK
Sbjct: 1   MADVETDVAA---AGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFPARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586481|gb|ADR71251.1| 40S ribosomal protein S15D [Hevea brasiliensis]

 Score =  294 bits (753), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 148/155 (95%), Positives = 148/155 (95%), Gaps = 4/155 (2%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VAAG    QPKKRTFKKFSFRGVDLDALLDMSTDEL KLF ARARRRFQRGLK
Sbjct: 1   MADVETEVAAG----QPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLK 56

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 57  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 116

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 117 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255551941|ref|XP_002517015.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223543650|gb|EEF45178.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  293 bits (751), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 146/155 (94%), Positives = 148/155 (95%), Gaps = 4/155 (2%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VA G    QPKKRTFKKFSFRGVDLDALLDMSTDEL KLF+ARARRRFQRGLK
Sbjct: 1   MADVETEVATG----QPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLK 56

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 57  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 116

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 117 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|223469631|gb|ACM90156.1| 40S ribosomal protein S15-like protein [Jatropha curcas]

 Score =  293 bits (749), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 147/155 (94%), Positives = 148/155 (95%), Gaps = 4/155 (2%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VAAG    QPKKRTFKKFSFRGVDLDALLDM+TDEL KLF ARARRRFQRGLK
Sbjct: 1   MADVETEVAAG----QPKKRTFKKFSFRGVDLDALLDMTTDELVKLFPARARRRFQRGLK 56

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 57  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 116

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 117 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Jatropha curcas

Species: Jatropha curcas

Genus: Jatropha

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483089|gb|ABK93454.1| unknown [Populus trichocarpa]

 Score =  292 bits (748), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 146/155 (94%), Positives = 148/155 (95%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VAA   AGQPKKRTFKKFSFRGVDLDALL+MSTDEL KLF ARARRRFQRGLK
Sbjct: 1   MADVETDVAA---AGQPKKRTFKKFSFRGVDLDALLEMSTDELVKLFPARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MI HYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MISHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224107915|ref|XP_002314652.1| predicted protein [Populus trichocarpa] gi|222863692|gb|EEF00823.1| predicted protein [Populus trichocarpa]

 Score =  291 bits (746), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 146/155 (94%), Positives = 148/155 (95%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADV+T VAA   AGQPKKRTFKKFSFRGVDLDALLDMSTDEL KLF+ARARRRFQRGLK
Sbjct: 1   MADVDTEVAA---AGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFNARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLR AKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRTAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|313586483|gb|ADR71252.1| 40S ribosomal protein S15E [Hevea brasiliensis]

 Score =  291 bits (745), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 146/155 (94%), Positives = 147/155 (94%), Gaps = 4/155 (2%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VAAG    QPKKRTFKKFSFRGVDLDALLDMSTDEL KLF ARARRRFQRGLK
Sbjct: 1   MADVETEVAAG----QPKKRTFKKFSFRGVDLDALLDMSTDELVKLFHARARRRFQRGLK 56

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPE VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 57  RKPMALIKKLRKAKREAPPGEKPESVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 116

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 117 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255559955|ref|XP_002520996.1| 40S ribosomal protein S15, putative [Ricinus communis] gi|223539833|gb|EEF41413.1| 40S ribosomal protein S15, putative [Ricinus communis]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 145/155 (93%), Positives = 148/155 (95%), Gaps = 3/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADV+  VAA    GQPKKRTFKKFSFRGVDLDALLDMSTDEL KLF+ARARRRFQRGLK
Sbjct: 1   MADVDGDVAA---PGQPKKRTFKKFSFRGVDLDALLDMSTDELVKLFTARARRRFQRGLK 57

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPE
Sbjct: 58  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPE 117

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 118 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 152

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388507654|gb|AFK41893.1| unknown [Lotus japonicus]

 Score =  290 bits (743), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 146/155 (94%), Positives = 146/155 (94%), Gaps = 4/155 (2%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVET VAAG     PKKRTFKKFSFRGVDLDALLDMSTDEL KLFSARARRRFQRGL 
Sbjct: 1   MADVETDVAAGV----PKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLT 56

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 57  RKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 116

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 117 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 151

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388506830|gb|AFK41481.1| unknown [Lotus japonicus]

 Score =  290 bits (741), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 146/155 (94%), Positives = 146/155 (94%), Gaps = 2/155 (1%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVE  VAA  A G PKKRTFKKFSFRGVDLDALLDMSTDEL KLFSARARRRFQRGL 
Sbjct: 1   MADVEVDVAA--AGGVPKKRTFKKFSFRGVDLDALLDMSTDELVKLFSARARRRFQRGLT 58

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct: 59  RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 118

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 119 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	155
TAIR|locus:2018324	152	RPS15 "cytosolic ribosomal pro	0.980	1.0	0.870	2.4e-67
TAIR|locus:2184772	152	AT5G09510 [Arabidopsis thalian	0.980	1.0	0.870	2.4e-67
TAIR|locus:2184752	150	AT5G09500 [Arabidopsis thalian	0.890	0.92	0.898	1.8e-62
TAIR|locus:2158382	149	AT5G43640 [Arabidopsis thalian	0.890	0.926	0.891	1.6e-61
TAIR|locus:2184847	152	AT5G09490 [Arabidopsis thalian	0.980	1.0	0.780	1.9e-60
FB|FBgn0034138	148	RpS15 "Ribosomal protein S15"	0.890	0.932	0.818	1.9e-58
UNIPROTKB|G4MYJ0	153	MGG_10370 "40S ribosomal prote	0.987	1.0	0.729	4.6e-57
ZFIN|ZDB-GENE-030131-9092	145	rps15 "ribosomal protein S15"	0.903	0.965	0.771	4.6e-57
UNIPROTKB|F1NNC3	153	RPS15 "40S ribosomal protein S	0.903	0.915	0.778	5.9e-57
UNIPROTKB|F2Z4M3	144	RPS15 "40S ribosomal protein S	0.903	0.972	0.778	5.9e-57

TAIR|locus:2018324 RPS15 "cytosolic ribosomal protein S15" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 135/155 (87%), Positives = 140/155 (90%)

Query:     1 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
             MADVE  V        PKKRTFKKF+F+GVDLDALLDMSTD+L KLFS+R RRRF RGL 
Sbjct:     1 MADVEPEVAAAGV---PKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 57

Query:    61 RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
             RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct:    58 RKPMALIKKLRKAKREAPQGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query:   121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
             MIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   118 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2184772 AT5G09510 [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 135/155 (87%), Positives = 140/155 (90%)

Query:     1 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
             MADVE  V        PKKRTFKKF+F+GVDLDALLDMSTD+L KLFS+R RRRF RGL 
Sbjct:     1 MADVEPEVAAAGV---PKKRTFKKFAFKGVDLDALLDMSTDDLVKLFSSRIRRRFSRGLT 57

Query:    61 RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
             RKPMALIKKLRKAKREAP GEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE
Sbjct:    58 RKPMALIKKLRKAKREAPAGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 117

Query:   121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
             MIGHYLAEFSISYKPVKHGRPG+GATHSSRFIPLK
Sbjct:   118 MIGHYLAEFSISYKPVKHGRPGVGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2184752 AT5G09500 [Arabidopsis thaliana (taxid:3702)]

 Score = 638 (229.6 bits), Expect = 1.8e-62, P = 1.8e-62
 Identities = 124/138 (89%), Positives = 129/138 (93%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTFKKFSFRGVDLDALLDMSTD+L KLF +R RRRF RGL RKPMALIKKLRKAK EA
Sbjct:    13 KKRTFKKFSFRGVDLDALLDMSTDDLVKLFPSRIRRRFSRGLTRKPMALIKKLRKAKIEA 72

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             P GEKP  VRTHLRNMIIVPEMIGS+IGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK
Sbjct:    73 PAGEKPAAVRTHLRNMIIVPEMIGSVIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 132

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPG+GAT+SSRFIPLK
Sbjct:   133 HGRPGVGATNSSRFIPLK 150

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2158382 AT5G43640 [Arabidopsis thaliana (taxid:3702)]

 Score = 629 (226.5 bits), Expect = 1.6e-61, P = 1.6e-61
 Identities = 123/138 (89%), Positives = 128/138 (92%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTFKKFSFRGVDLDALLDMS ++L K FS+R RRRF RGL RKPMALIKKLRKAK EA
Sbjct:    12 KKRTFKKFSFRGVDLDALLDMSIEDLVKHFSSRIRRRFSRGLTRKPMALIKKLRKAKMEA 71

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             P GEKP  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK
Sbjct:    72 PAGEKPASVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 131

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPG+GAT+SSRFIPLK
Sbjct:   132 HGRPGVGATNSSRFIPLK 149

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

TAIR|locus:2184847 AT5G09490 [Arabidopsis thaliana (taxid:3702)]

 Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
 Identities = 121/155 (78%), Positives = 133/155 (85%)

Query:     1 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
             MA+VE  V         KKRTFKKFSF+GVDLDALLDM TD+L +LF +R RRR  RGL 
Sbjct:     1 MAEVEPDVSAAALA---KKRTFKKFSFKGVDLDALLDMPTDDLVELFPSRIRRRMSRGLT 57

Query:    61 RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
             RKPMALIKKLRKAK +AP GEKPE VRTHLRNM+I+PEMIGSIIGVYNGKTFNQ+EIKPE
Sbjct:    58 RKPMALIKKLRKAKLDAPAGEKPEVVRTHLRNMVIMPEMIGSIIGVYNGKTFNQIEIKPE 117

Query:   121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
             MIGHYLAEFSI+YKPV+HG+PG GATHSSRFIPLK
Sbjct:   118 MIGHYLAEFSITYKPVRHGKPGHGATHSSRFIPLK 152

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA;ISS

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

FB|FBgn0034138 RpS15 "Ribosomal protein S15" [Drosophila melanogaster (taxid:7227)]

 Score = 600 (216.3 bits), Expect = 1.9e-58, P = 1.9e-58
 Identities = 113/138 (81%), Positives = 125/138 (90%)

Query:    18 KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
             KKRTFKKF++RGVDLD LLDM  ++L +L  +RARRRF RGLKRKPMALIKKLRKAK+EA
Sbjct:    11 KKRTFKKFTYRGVDLDQLLDMPNNQLVELMHSRARRRFSRGLKRKPMALIKKLRKAKKEA 70

Query:    78 PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             PP EKPE V+THLRNMIIVPEM GSIIGVYNGK F QVE+KPEMIGHYL EF+++YKPVK
Sbjct:    71 PPNEKPEIVKTHLRNMIIVPEMTGSIIGVYNGKDFGQVEVKPEMIGHYLGEFALTYKPVK 130

Query:   138 HGRPGIGATHSSRFIPLK 155
             HGRPGIGATHSSRFIPLK
Sbjct:   131 HGRPGIGATHSSRFIPLK 148

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0003723 "RNA binding" evidence=IEA

GO:0005811 "lipid particle" evidence=IDA

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|G4MYJ0 MGG_10370 "40S ribosomal protein S15" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 113/155 (72%), Positives = 130/155 (83%)

Query:     1 MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
             MADVE            K+R F+KFS+RGVDLD LLD+++D+L  +  ARARRR  RGLK
Sbjct:     1 MADVEYNAEEAAEIK--KRRAFRKFSYRGVDLDQLLDLTSDQLRDVVHARARRRINRGLK 58

Query:    61 RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
             RKPM LIKKLRKAK+EA P EKP+ V+THLR+MI+VPEMIGS+IG+Y+GK FNQVEIKPE
Sbjct:    59 RKPMGLIKKLRKAKQEAKPNEKPDLVKTHLRDMIVVPEMIGSVIGIYSGKEFNQVEIKPE 118

Query:   121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
             M+GHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct:   119 MVGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 153

GO:0043581 "mycelium development" evidence=IEP

ZFIN|ZDB-GENE-030131-9092 rps15 "ribosomal protein S15" [Danio rerio (taxid:7955)]

 Score = 587 (211.7 bits), Expect = 4.6e-57, P = 4.6e-57
 Identities = 108/140 (77%), Positives = 128/140 (91%)

Query:    16 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+
Sbjct:     6 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQQSLLKRLRKAKK 65

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             EAPP EKPE V+THLR+M+I+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKP
Sbjct:    66 EAPPMEKPEVVKTHLRDMVILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKP 125

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             VKHGRPGIGATHSSRFIPLK
Sbjct:   126 VKHGRPGIGATHSSRFIPLK 145

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0015935 "small ribosomal subunit" evidence=IEA

GO:0009790 "embryo development" evidence=IMP

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NNC3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 109/140 (77%), Positives = 128/140 (91%)

Query:    16 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+
Sbjct:    14 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKK 73

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKP
Sbjct:    74 EAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKP 133

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             VKHGRPGIGATHSSRFIPLK
Sbjct:   134 VKHGRPGIGATHSSRFIPLK 153

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

UNIPROTKB|F2Z4M3 RPS15 "40S ribosomal protein S15" [Gallus gallus (taxid:9031)]

 Score = 586 (211.3 bits), Expect = 5.9e-57, P = 5.9e-57
 Identities = 109/140 (77%), Positives = 128/140 (91%)

Query:    16 QPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
             Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+RK  +L+K+LRKAK+
Sbjct:     5 QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLRRKQHSLLKRLRKAKK 64

Query:    76 EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
             EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPEMIGHYL EFSI+YKP
Sbjct:    65 EAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKP 124

Query:   136 VKHGRPGIGATHSSRFIPLK 155
             VKHGRPGIGATHSSRFIPLK
Sbjct:   125 VKHGRPGIGATHSSRFIPLK 144

GO:0003723 "RNA binding" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0000056 "ribosomal small subunit export from nucleus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4YCX0	RS19_METS5	No assigned EC number	0.4552	0.8451	0.9357	yes	no
Q8ZWL4	RS19_PYRAE	No assigned EC number	0.5149	0.8580	0.8417	yes	no
C5A282	RS19_THEGJ	No assigned EC number	0.5263	0.8322	0.9699	yes	no
Q9UXA3	RS19_SULSO	No assigned EC number	0.4626	0.8451	0.9357	yes	no
Q9YF74	RS19_AERPE	No assigned EC number	0.5153	0.8258	0.8888	yes	no
O65059	RS15_PICMA	No assigned EC number	0.8831	0.9548	0.9801	N/A	no
Q975I5	RS19_SULTO	No assigned EC number	0.4925	0.8451	0.9357	yes	no
C6A163	RS19_THESM	No assigned EC number	0.4661	0.8322	0.9699	yes	no
Q9XVP0	RS15_CAEEL	No assigned EC number	0.7101	0.8903	0.9139	yes	no
Q18GF3	RS19_HALWD	No assigned EC number	0.4736	0.8258	0.9142	yes	no
Q08112	RS151_ARATH	No assigned EC number	0.8967	0.9806	1.0	no	no
P34737	RS15_PODAS	No assigned EC number	0.7602	0.9419	0.9605	yes	no
A3DNB1	RS19_STAMF	No assigned EC number	0.5223	0.8580	0.9300	yes	no
P62845	RS15_RAT	No assigned EC number	0.7638	0.9290	0.9931	yes	no
A2BMB3	RS19_HYPBU	No assigned EC number	0.5074	0.8580	0.9236	yes	no
Q5JDH3	RS19_PYRKO	No assigned EC number	0.5263	0.8322	0.9699	yes	no
P54018	RS19_METJA	No assigned EC number	0.5	0.8516	0.8684	yes	no
P31674	RS15_ORYSJ	No assigned EC number	0.8917	0.9806	0.9870	yes	no
Q56K10	RS15_BOVIN	No assigned EC number	0.7569	0.9290	0.9931	yes	no
Q01855	RS15_YEAST	No assigned EC number	0.6458	0.9096	0.9929	yes	no
Q5RDI7	RS15_PONAB	No assigned EC number	0.7638	0.9290	0.9931	no	no
O59422	RS19_PYRHO	No assigned EC number	0.5338	0.8322	0.9772	yes	no
P62842	RS15_MESAU	No assigned EC number	0.7638	0.9290	0.9931	N/A	no
P62843	RS15_MOUSE	No assigned EC number	0.7638	0.9290	0.9931	yes	no
P62841	RS15_HUMAN	No assigned EC number	0.7638	0.9290	0.9931	yes	no
P62846	RS15_CHICK	No assigned EC number	0.7638	0.9290	0.9931	yes	no
P62844	RS15_PIG	No assigned EC number	0.7638	0.9290	0.9931	yes	no
O94715	RS15A_SCHPO	No assigned EC number	0.7028	0.8903	0.9019	yes	no
Q4JB44	RS19_SULAC	No assigned EC number	0.4776	0.8451	0.9357	yes	no
Q8U002	RS19_PYRFU	No assigned EC number	0.5338	0.8322	0.9772	yes	no
B9LSS3	RS19_HALLT	No assigned EC number	0.4705	0.8580	0.9432	yes	no
B6YSL7	RS19_THEON	No assigned EC number	0.5112	0.8322	0.9699	yes	no
O26114	RS19_METTH	No assigned EC number	0.4586	0.8580	0.9779	yes	no
P15010	RS19_HALSA	No assigned EC number	0.4545	0.8322	0.9214	yes	no
Q9UTQ6	RS15B_SCHPO	No assigned EC number	0.7101	0.8903	0.8961	yes	no
P20342	RS15_XENLA	No assigned EC number	0.7519	0.8322	0.8896	N/A	no
A5UL85	RS19_METS3	No assigned EC number	0.4586	0.8580	0.9779	yes	no
Q9FIX6	RS155_ARATH	No assigned EC number	0.875	0.9290	0.9664	no	no
Q3IMY4	RS19_NATPD	No assigned EC number	0.4772	0.8322	0.9214	yes	no
P20284	RS19_HALMA	No assigned EC number	0.4772	0.8322	0.9214	yes	no
Q945U1	RS15_ELAOL	No assigned EC number	0.9032	0.9870	1.0	N/A	no
P70066	RS15_XIPMA	No assigned EC number	0.7536	0.8903	0.9517	N/A	no
Q9V1T9	RS19_PYRAB	No assigned EC number	0.5338	0.8322	0.9772	yes	no
B0R660	RS19_HALS3	No assigned EC number	0.4545	0.8322	0.9214	yes	no
Q9FY65	RS153_ARATH	No assigned EC number	0.8516	0.9677	1.0	yes	no
Q9FY64	RS154_ARATH	No assigned EC number	0.8967	0.9806	1.0	no	no
Q54N17	RS15_DICDI	No assigned EC number	0.6241	0.9032	0.9722	yes	no
Q9FY66	RS152_ARATH	No assigned EC number	0.8	0.9806	1.0	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_fgenesh4_pg.C_LG_II0398	SubName- Full=Putative uncharacterized protein; (152 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_fgenesh4_pg.C_LG_V0222	SubName- Full=Putative uncharacterized protein; (147 aa)	•		•	•					0.540
	estExt_fgenesh4_kg.C_LG_II0054	SubName- Full=Putative uncharacterized protein; (159 aa)	•			•	•				0.529
	grail3.0040004901	SubName- Full=Putative uncharacterized protein; (159 aa)	•			•	•				0.529
	gw1.1845.1.1	60S ribosomal protein L4/L1 (RPL4D) (408 aa)	•			•					0.511
	estExt_Genewise1_v1.C_280409	SubName- Full=Putative uncharacterized protein; (408 aa)	•			•					0.511
	estExt_Genewise1_v1.C_LG_XVIII3410	hypothetical protein (160 aa)	•			•					0.509
	estExt_fgenesh4_pm.C_LG_V0429	SubName- Full=Putative uncharacterized protein; (389 aa)	•			•		•	•		0.507
	gw1.XVI.1998.1	SubName- Full=Putative uncharacterized protein; (204 aa)				•	•	•			0.503
	estExt_fgenesh4_pm.C_LG_II0304	SubName- Full=Putative uncharacterized protein; (389 aa)	•			•		•	•		0.501
	eugene3.00061162	SubName- Full=Putative uncharacterized protein; (208 aa)				•	•	•			0.499

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	155
PTZ00096	143	PTZ00096, PTZ00096, 40S ribosomal protein S15; Pro	6e-89
TIGR01025	135	TIGR01025, rpsS_arch, ribosomal protein S19(archae	3e-76
PRK04038	134	PRK04038, rps19p, 30S ribosomal protein S19P; Prov	5e-59
pfam00203	81	pfam00203, Ribosomal_S19, Ribosomal protein S19	3e-40
COG0185	93	COG0185, RpsS, Ribosomal protein S19 [Translation,	6e-37
PRK00357	92	PRK00357, rpsS, 30S ribosomal protein S19; Reviewe	7e-13
TIGR01050	92	TIGR01050, rpsS_bact, ribosomal protein S19, bacte	5e-12
CHL00050	92	CHL00050, rps19, ribosomal protein S19	3e-10

>gnl|CDD|185442 PTZ00096, PTZ00096, 40S ribosomal protein S15; Provisional

 Score =  254 bits (652), Expect = 6e-89
 Identities = 97/141 (68%), Positives = 117/141 (82%)

Query: 13  AAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRK 72
                KKRTFKKF++RGV+L+ LL +  +EL +LF AR RRR  RG+KRK   L+KKLRK
Sbjct: 3   YEQLKKKRTFKKFTYRGVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRK 62

Query: 73  AKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS 132
           AK+   PGEKP+ V+THLR+MIIVPEM+GS++GVYNGK FN VEIKPEMIGHYL EFSI+
Sbjct: 63  AKKATKPGEKPKAVKTHLRDMIIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSIT 122

Query: 133 YKPVKHGRPGIGATHSSRFIP 153
           YKPV+HG+PG+GATHSSRFIP
Sbjct: 123 YKPVRHGKPGVGATHSSRFIP 143

Length = 143

>gnl|CDD|130097 TIGR01025, rpsS_arch, ribosomal protein S19(archaeal)/S15(eukaryotic)

 Score =  223 bits (569), Expect = 3e-76
 Identities = 96/135 (71%), Positives = 110/135 (81%)

Query: 21  TFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG 80
           TFK+F +RG  L+ L DMS +ELAKL  AR RRR +RGL  K   L+KKLRKAK+EAP G
Sbjct: 1   TFKEFRYRGYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKG 60

Query: 81  EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 140
           EKPE +RTH R+MII+PEM+GS +GVYNGK F QVEIKPEMIGHYL EFSI+ KPVKHGR
Sbjct: 61  EKPEVIRTHCRDMIILPEMVGSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGR 120

Query: 141 PGIGATHSSRFIPLK 155
           PGIGAT SS F+PLK
Sbjct: 121 PGIGATRSSMFVPLK 135

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 135

>gnl|CDD|235209 PRK04038, rps19p, 30S ribosomal protein S19P; Provisional

 Score =  179 bits (456), Expect = 5e-59
 Identities = 73/133 (54%), Positives = 99/133 (74%), Gaps = 3/133 (2%)

Query: 23  KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK 82
           K+F++RG  L+ L +MS +E A+L  AR RR  +RGL  +   L++K+RKA+RE    +K
Sbjct: 5   KEFTYRGYTLEELQEMSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARRE---KKK 61

Query: 83  PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 142
              +RTH+R+MII+PEM+G  I VYNGK F +VEI PEMIGHYL EF+++ K V+HG PG
Sbjct: 62  GRVIRTHVRDMIILPEMVGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPG 121

Query: 143 IGATHSSRFIPLK 155
           IGAT SS+F+PLK
Sbjct: 122 IGATRSSKFVPLK 134

Length = 134

>gnl|CDD|201079 pfam00203, Ribosomal_S19, Ribosomal protein S19

 Score =  129 bits (327), Expect = 3e-40
 Identities = 40/82 (48%), Positives = 50/82 (60%), Gaps = 1/82 (1%)

Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +K LRK K+E    EK E ++T  R   I+PEM+G  I VYNGK F  V 
Sbjct: 1   RSLKKGPFVDLKLLRKIKKENTKNEK-EVIKTWSRRSTILPEMVGHTIAVYNGKEFVPVY 59

Query: 117 IKPEMIGHYLAEFSISYKPVKH 138
           I PEM+GH L EF+ + K V H
Sbjct: 60  ITPEMVGHKLGEFAPTRKFVGH 81

Length = 81

>gnl|CDD|223263 COG0185, RpsS, Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

 Score =  121 bits (307), Expect = 6e-37
 Identities = 43/98 (43%), Positives = 56/98 (57%), Gaps = 5/98 (5%)

Query: 51  ARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGK 110
            RR  ++G       L+KK+RKAK       K +P++T  R   I+PEM+G  I V+NGK
Sbjct: 1   MRRSLKKGPFVDK-HLLKKVRKAKES----GKKKPIKTWSRRSTILPEMVGLTIAVHNGK 55

Query: 111 TFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHS 148
            F  VEI  EM+GH L EF+ +   V HG  GI AT S
Sbjct: 56  KFVPVEITEEMVGHKLGEFAPTRTFVGHGADGIKATRS 93

Length = 93

>gnl|CDD|178985 PRK00357, rpsS, 30S ribosomal protein S19; Reviewed

 Score = 60.2 bits (147), Expect = 7e-13
 Identities = 28/77 (36%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ KA      G+K + ++T  R   I+PE +G  I V+NG+   
Sbjct: 3   RSLKKGPFVDGHLLKKVEKANES---GDK-KVIKTWSRRSTILPEFVGLTIAVHNGRKHV 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V +   M+GH L EF+
Sbjct: 59  PVYVTENMVGHKLGEFA 75

Length = 92

>gnl|CDD|130122 TIGR01050, rpsS_bact, ribosomal protein S19, bacterial/organelle

 Score = 58.1 bits (141), Expect = 5e-12
 Identities = 31/77 (40%), Positives = 42/77 (54%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ K         K + ++T  R   I+PEMIG  I V+NGK F 
Sbjct: 3   RSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFI 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V I  +M+GH L EF+
Sbjct: 59  PVYITEDMVGHKLGEFA 75

The homologous protein of the eukaryotic cytosol and of the Archaea may be designated S15 or S19 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 92

>gnl|CDD|176991 CHL00050, rps19, ribosomal protein S19

 Score = 53.4 bits (129), Expect = 3e-10
 Identities = 29/77 (37%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ K   +    E+ E + T  R   I+P MIG  I V+NGK   
Sbjct: 3   RSLKKNPFVANHLLKKIEKLNTK----EEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHI 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            + I  +M+GH L EF+
Sbjct: 59  PIYITDQMVGHKLGEFA 75

Length = 92

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	155
KOG0898	152	consensus 40S ribosomal protein S15 [Translation,	100.0
PTZ00096	143	40S ribosomal protein S15; Provisional	100.0
TIGR01025	135	rpsS_arch ribosomal protein S19(archaeal)/S15(euka	100.0
PRK04038	134	rps19p 30S ribosomal protein S19P; Provisional	100.0
COG0185	93	RpsS Ribosomal protein S19 [Translation, ribosomal	100.0
CHL00050	92	rps19 ribosomal protein S19	100.0
TIGR01050	92	rpsS_bact ribosomal protein S19, bacterial/organel	100.0
PRK00357	92	rpsS 30S ribosomal protein S19; Reviewed	100.0
PF00203	81	Ribosomal_S19: Ribosomal protein S19; InterPro: IP	100.0
PLN03147	92	ribosomal protein S19; Provisional	99.97
KOG0899	93	consensus Mitochondrial/chloroplast ribosomal prot	99.96

>KOG0898 consensus 40S ribosomal protein S15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=7.9e-75  Score=452.83  Aligned_cols=143  Identities=82%  Similarity=1.276  Sum_probs=140.6

Q ss_pred             hhcCCcccceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCC
Q 031659           13 AAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRN   92 (155)
Q Consensus        13 ~~~~~Kkrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~   92 (155)
                      ++.++|||||++|||||+|||||+|||.|||++|+|||+||+++|||+++|+.||++||+|+++++++++|++|+||+||
T Consensus        10 ~~~~kKKRTFrkftyrGVdld~Lldms~~~~~~l~~ar~rrR~~RGL~~k~~~liKklrkAkk~A~~~ekpe~VkTHlR~   89 (152)
T KOG0898|consen   10 AAVLKKKRTFRKFTYRGVDLDQLLDMSTEQLVKLFPARQRRRLNRGLTRKPHSLIKKLRKAKKEAPPMEKPEVVKTHLRN   89 (152)
T ss_pred             HHHHhhhhhhhhccccCCCHHHHhcCCHHHHHHHHHHHHHHHHHcccccchHHHHHHHHHHHhhcCcccCcHHHHHHhhc
Confidence            34688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659           93 MIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus        93 ~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK  155 (155)
                      |||+|||||+.|||||||+|++|||+||||||||||||+||||++||+|||||||||+|+|||
T Consensus        90 mII~PEMvGs~VGVyNGK~FnqvEiKPEMIGhYL~eFsiTykpvkHgrpgigat~SsrfipLk  152 (152)
T KOG0898|consen   90 MIIVPEMVGSMVGVYNGKTFNQVEIKPEMIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK  152 (152)
T ss_pred             ceeeHhhhcceEEEecCcccceeeccHHHHhhhhhhccccccccccCCCCCCcccccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999999997

>PTZ00096 40S ribosomal protein S15; Provisional

Probab=100.00  E-value=8.5e-71  Score=431.09  Aligned_cols=140  Identities=69%  Similarity=1.189  Sum_probs=137.4

Q ss_pred             hcCCcccceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCc
Q 031659           14 AGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNM   93 (155)
Q Consensus        14 ~~~~Kkrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~   93 (155)
                      ++++|+|+|++|+|||+|||||++||+|||++|+||||||+++|||..++.+||++|++++++++++++|++|+||+|+|
T Consensus         4 ~~~~k~r~~k~f~yRG~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~~~~~~~~~k~~~ikT~~R~~   83 (143)
T PTZ00096          4 EQLKKKRTFKKFTYRGVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAKKATKPGEKPKAVKTHLRDM   83 (143)
T ss_pred             cccccccccceeeeecCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHHhhhcccccCCcceeEecccC
Confidence            47789999999999999999999999999999999999999999999999999999999999888899999999999999


Q ss_pred             eeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCccc
Q 031659           94 IIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIP  153 (155)
Q Consensus        94 ~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~Fvp  153 (155)
                      +|+|+|||++|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||
T Consensus        84 ~IlP~mVG~ti~VyNGK~fv~V~I~~eMIGhkLGEFa~Trk~~~Hg~pGigATrSS~fvp  143 (143)
T PTZ00096         84 IIVPEMVGSVVGVYNGKQFNNVEIKPEMIGHYLGEFSITYKPVRHGKPGVGATHSSRFIP  143 (143)
T ss_pred             eeCccccCcEEEEEcCCeeEeeEeccCeeceeeccccCCcccccCCCCCcCcccccccCC
Confidence            999999999999999999999999999999999999999999999999999999999998

>TIGR01025 rpsS_arch ribosomal protein S19(archaeal)/S15(eukaryotic)

Probab=100.00  E-value=1e-66  Score=405.06  Aligned_cols=135  Identities=71%  Similarity=1.132  Sum_probs=130.9

Q ss_pred             ceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccCcc
Q 031659           21 TFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMI  100 (155)
Q Consensus        21 tf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mV  100 (155)
                      +|++|+|||++||+|++||++||++|+||||||++.||+...+.+||++++++++...++++|++|+||+|+|+|+|+||
T Consensus         1 ~~~~f~yrG~~l~~L~~m~~~e~~~l~~ar~RRs~~RG~~~~~~~Llkki~k~~~~~~~g~k~~~IKT~sR~s~IlP~~V   80 (135)
T TIGR01025         1 TFKEFRYRGYTLEELQDMSLEELAKLLPARQRRRLKRGLTPKQKKLLKKLRKAKKEAPKGEKPEVIRTHCRDMIILPEMV   80 (135)
T ss_pred             CCceEeecccCHHHHHcCCHHHHHHHcCcccCcccccCCchhhHHHHHHHHHHHhccccccCCcceEEeccCCeeChhhc
Confidence            68999999999999999999999999999999999999999999999999998876666778899999999999999999


Q ss_pred             ccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659          101 GSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus       101 G~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK  155 (155)
                      |++|+|||||+|++|+|+||||||||||||+||+++.||+||||||+||+|||||
T Consensus        81 G~ti~VyNGk~fv~v~I~~eMVGhklGEFa~Trk~~~Hg~pGigAt~ss~fvplK  135 (135)
T TIGR01025        81 GSTVGVYNGKEFVQVEIKPEMIGHYLGEFSITRKPVKHGRPGIGATRSSMFVPLK  135 (135)
T ss_pred             CcEEEEEcCCeeEEEEecCCeeceeecccccCcccCcCCCCCcCccccccceeCc
Confidence            9999999999999999999999999999999999999999999999999999997

This model represents eukaryotic ribosomal protein S15 and its archaeal equivalent. It excludes bacterial and organellar ribosomal protein S19. The nomenclature for the archaeal members is unresolved and given variously as S19 (after the more distant bacterial homologs) or S15.

>PRK04038 rps19p 30S ribosomal protein S19P; Provisional

Probab=100.00  E-value=1.1e-65  Score=398.86  Aligned_cols=133  Identities=55%  Similarity=0.967  Sum_probs=127.5

Q ss_pred             cceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccCc
Q 031659           20 RTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEM   99 (155)
Q Consensus        20 rtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~m   99 (155)
                      ++|++|+|||++||||++||+|||++|+||||||++.||+...+.+||++++++++..   ++|++|+||+|+|+|+|+|
T Consensus         2 ~~~~~f~yrG~~l~~L~~m~~~~~~~l~~ar~RRsl~KGp~~~~~~LlkKi~k~~~~~---~k~~~ikT~sR~s~IlP~~   78 (134)
T PRK04038          2 KRWKEFTYRGYTLEELQEMSLEEFAELLPARQRRSLKRGLTPEQRKLLEKIRKARREK---KKGRVIRTHVRDMIILPEM   78 (134)
T ss_pred             CccceeeecccCHHHHHcCCHHHHHHHcchhhhhhhccCCCcchHHHHHHHHHHHhcc---cCCcceeEeccCCeeChhh
Confidence            6899999999999999999999999999999999999999988999999999987633   4567899999999999999


Q ss_pred             cccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659          100 IGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus       100 VG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK  155 (155)
                      ||++|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||||
T Consensus        79 VG~ti~VyNGk~fv~v~I~~eMVGhklGEFa~Trk~~~Hg~pGigAT~sS~fvplK  134 (134)
T PRK04038         79 VGLTIAVYNGKEFVEVEIVPEMIGHYLGEFALTRKRVQHGSPGIGATRSSKFVPLK  134 (134)
T ss_pred             cCeEEEEecCceeEeEEeccCccceeeccccCCcccCcCCCCCcCccccccceeCc
Confidence            99999999999999999999999999999999999999999999999999999997

>COG0185 RpsS Ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=3e-42  Score=253.41  Aligned_cols=92  Identities=47%  Similarity=0.681  Sum_probs=81.8

Q ss_pred             hhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           52 RRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        52 RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      ||++.||.. .+.+||+++++++...   ++ ++||||||+|+|||+|||++|+|||||+|+||+|+|||||||||||||
T Consensus         2 ~RSlkkGp~-~~~~Ll~Kv~~~~~~~---~k-~~IkT~sR~stIlPemVG~ti~VhNGk~~vpV~I~~eMVGHkLGEFap   76 (93)
T COG0185           2 RRSLKKGPF-VDKHLLKKVRKAKESG---KK-KPIKTWSRRSTILPEMVGLTIAVHNGKKFVPVEITEEMVGHKLGEFAP   76 (93)
T ss_pred             CcccccCcc-ccHHHHHHHHHHHhcc---CC-CcceeeecccEechhhcCcEEEEEcCceEEEEEechhhcceecccccc
Confidence            455555555 4469999999988632   33 689999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCCCCCCCC
Q 031659          132 SYKPVKHGRPGIGATHS  148 (155)
Q Consensus       132 Trk~~~Hg~pGigAT~s  148 (155)
                      ||+++.|+.||+|||+|
T Consensus        77 TR~~~~H~~~~~~atr~   93 (93)
T COG0185          77 TRTFVGHGADGIKATRS   93 (93)
T ss_pred             eecccccCCCCcCcccC
Confidence            99999999999999986

>CHL00050 rps19 ribosomal protein S19

Probab=100.00  E-value=1.3e-35  Score=218.03  Aligned_cols=81  Identities=37%  Similarity=0.552  Sum_probs=74.4

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+||+|+   +||++++++..    .+++++|+||+|+|+|||+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~wKgpfv~~~Ll~ki~~~~~----~~~~~~ikT~sR~s~IlP~~vg~t~~VyNGk~fv~v~I~~eMVGhklGEFa~   76 (92)
T CHL00050          1 MTRSLKKNPFVANHLLKKIEKLNT----KEEKEIIVTWSRASTIIPTMIGHTIAVHNGKEHIPIYITDQMVGHKLGEFAP   76 (92)
T ss_pred             CCCccccCcccCHHHHHHHHHhhh----ccCCccceEEccccEeChhhcCcEEEEEcCceEEEEEEccccccceeeeEee
Confidence            7899999997   89999987653    2345689999999999999999999999999999999999999999999999


Q ss_pred             eeecccCC
Q 031659          132 SYKPVKHG  139 (155)
Q Consensus       132 Trk~~~Hg  139 (155)
                      ||+++.|+
T Consensus        77 TRk~~~h~   84 (92)
T CHL00050         77 TRNFRGHA   84 (92)
T ss_pred             eecccccc
Confidence            99999995

>TIGR01050 rpsS_bact ribosomal protein S19, bacterial/organelle

Probab=100.00  E-value=6.7e-35  Score=214.35  Aligned_cols=82  Identities=39%  Similarity=0.608  Sum_probs=75.1

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |+||+|++|+   +||+++++++.    .+++++|+||+|+|+|+|+|||++|+||||++|++|+|++|||||||||||+
T Consensus         1 MsRS~wKgpfv~~~Ll~ki~k~~~----~~~~~~ikT~sR~s~IlP~~vg~~i~VynGk~fv~v~I~~~MvGhklGEFa~   76 (92)
T TIGR01050         1 MSRSLKKGPFVDHHLLKKVEKLNE----SGKKKVIKTWSRRSTIIPEMIGHTIAVHNGKKFIPVYITEDMVGHKLGEFAP   76 (92)
T ss_pred             CCcccccCccccHHHHHHHHHhhc----ccCCCceEEEecccEEChHHCCcEEEEEcCceEEEEEeCcCeecceeeeeec
Confidence            6899999996   89999988752    2346789999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 031659          132 SYKPVKHGR  140 (155)
Q Consensus       132 Trk~~~Hg~  140 (155)
                      ||+++.|++
T Consensus        77 TRk~~~h~~   85 (92)
T TIGR01050        77 TRTFKGHAK   85 (92)
T ss_pred             eeecccccc
Confidence            999999975

the Archaea may be designated S15 or S19.

>PRK00357 rpsS 30S ribosomal protein S19; Reviewed

Probab=100.00  E-value=7.9e-35  Score=214.00  Aligned_cols=82  Identities=33%  Similarity=0.528  Sum_probs=74.5

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||+++++++..    .++++|+||+|+|+|+|+|||++|+||||++|++|+|+|||||||||||++
T Consensus         1 M~RS~~Kgp~v~~~Ll~ki~k~~~~----~~~~~ikT~sR~s~IlP~~vg~~i~VyNGk~fv~v~I~~emiGhklGEFa~   76 (92)
T PRK00357          1 MARSLKKGPFVDGHLLKKVEKANES----GDKKVIKTWSRRSTILPEFVGLTIAVHNGRKHVPVYVTENMVGHKLGEFAP   76 (92)
T ss_pred             CCcccccCccccHHHHHHHHHHhhc----cCCCceEEeeccCCcCHHHCCceEEEEcCCeeEeEEeccCccceeeeeecc
Confidence            6899999986   899999987532    235679999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 031659          132 SYKPVKHGR  140 (155)
Q Consensus       132 Trk~~~Hg~  140 (155)
                      ||++++|+.
T Consensus        77 Tr~~~~H~~   85 (92)
T PRK00357         77 TRTFRGHAA   85 (92)
T ss_pred             eeccccccc
Confidence            999999973

>PF00203 Ribosomal_S19: Ribosomal protein S19; InterPro: IPR002222 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=8e-35  Score=208.90  Aligned_cols=81  Identities=51%  Similarity=0.838  Sum_probs=74.1

Q ss_pred             cCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecc
Q 031659           57 RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPV  136 (155)
Q Consensus        57 Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~  136 (155)
                      ||+|++|+.+...++++++..+.+++ ++|+||+|+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||+++
T Consensus         1 Rs~~K~~~~~~~~l~k~~~~~~~~~k-~~ikt~~R~s~IlP~~vg~~i~VyNGk~f~~i~I~~~miG~klGEF~~Trk~~   79 (81)
T PF00203_consen    1 RSLWKGPFVLKKLLKKIKKLNPSKKK-KVIKTHSRSSTILPEMVGKTIGVYNGKKFVPIKITPEMIGHKLGEFAPTRKPV   79 (81)
T ss_dssp             CCSSSSTHHHHHHHHHHHHHHCTTST-SEEEESSTTSBBSGTGTTSEEEEESSSSEEEEECSSTGTSSBCGCGSSSSSTS
T ss_pred             CCCCcccchhHHHHHHHHHHhhcCCC-cceEEEeCCCCcccceeceEEEEecCceEEEEEecccccceEeeceeeecccC
Confidence            89999999888778777665554554 79999999999999999999999999999999999999999999999999999


Q ss_pred             cC
Q 031659          137 KH  138 (155)
Q Consensus       137 ~H  138 (155)
                      .|
T Consensus        80 ~H   81 (81)
T PF00203_consen   80 KH   81 (81)
T ss_dssp             CT
T ss_pred             CC
Confidence            98

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The small subunit ribosomal proteins can be categorised as: primary binding proteins, which bind directly and independently to 16S rRNA; secondary binding proteins, which display no specific affinity for 16S rRNA, but its assembly is contingent upon the presence of one or more primary binding proteins; and tertiary binding proteins, which require the presence of one or more secondary binding proteins and sometimes other tertiary binding proteins. The small ribosomal subunit protein S19 contains 88-144 amino acid residues. In Escherichia coli, S19 is known to form a complex with S13 that binds strongly to 16S ribosomal RNA. Experimental evidence [] has revealed that S19 is moderately exposed on the ribosomal surface, and is designated a secondary rRNA binding protein. S19 belongs to a family of ribosomal proteins [, ] that includes: eubacterial S19; algal and plant chloroplast S19; cyanelle S19; archaebacterial S19; plant mitochondrial S19; and eukaryotic S15 ('rig' protein).; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005840 ribosome; PDB: 2XZM_S 2XZN_S 2ZKQ_s 3U5C_P 3O30_I 3U5G_P 3O2Z_I 3IZB_R 1S1H_S 1XMO_S ....

>PLN03147 ribosomal protein S19; Provisional

Probab=99.97  E-value=3.6e-32  Score=200.00  Aligned_cols=78  Identities=21%  Similarity=0.347  Sum_probs=69.1

Q ss_pred             cCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeee
Q 031659           57 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY  133 (155)
Q Consensus        57 Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Tr  133 (155)
                      ||+|++|+   +|+ ++.+++..      ..+|+||||+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||
T Consensus         1 RS~wKGPfv~~~L~-k~~~~~~~------~~~iktwSR~S~IlP~~vg~ti~VyNGk~fv~v~It~~MVGhKlGEFa~Tr   73 (92)
T PLN03147          1 QAIWKGAFVDAFLA-RIKKKRDL------LLGKKIWSHRSSILPDFVDCSVLIYNGKTHIRCKITEGKVGHKFGEFAFTR   73 (92)
T ss_pred             CCCccCccccHHHH-HHHHHHhc------CCceeEEcccceECHHHcCCEEEEeCCCceEEEEecCCccceeeeccccEe
Confidence            89999997   664 57765531      147999999999999999999999999999999999999999999999999


Q ss_pred             ecccCCCC
Q 031659          134 KPVKHGRP  141 (155)
Q Consensus       134 k~~~Hg~p  141 (155)
                      +++.|..-
T Consensus        74 k~~~hk~~   81 (92)
T PLN03147         74 KRRPHRAI   81 (92)
T ss_pred             cccCCCCc
Confidence            99999754

>KOG0899 consensus Mitochondrial/chloroplast ribosomal protein S19 [Translation, ribosomal structure and biogenesis]

Probab=99.96  E-value=2.7e-31  Score=193.55  Aligned_cols=80  Identities=33%  Similarity=0.575  Sum_probs=71.1

Q ss_pred             hhhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeee
Q 031659           54 RFQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFS  130 (155)
Q Consensus        54 ~~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa  130 (155)
                      +|.||+||+|+   .|+++..+++.       ..+|+||+|+++|||+|||++|.|||||+|++|+|+++|||||||||+
T Consensus         9 Sm~RSvwK~P~V~~~~~rk~~~~~~-------~~pikt~sRasTIlP~~Vg~~~~IhNGk~~v~vkIte~mVGHKlGEFa   81 (93)
T KOG0899|consen    9 SMTRSVWKGPFVVKFLLRKIEKLKG-------KAPIKTWSRASTILPTMVGHTFAIHNGKEHVPVKITEDMVGHKLGEFA   81 (93)
T ss_pred             HHHHHhhcCcchhHHHHHHHHHhcC-------CCceeehhhhcchhhhhhCceEEEecCcceeeEEeecchhcccccccc
Confidence            49999999997   56666655442       235999999999999999999999999999999999999999999999


Q ss_pred             eeeecccCCC
Q 031659          131 ISYKPVKHGR  140 (155)
Q Consensus       131 ~Trk~~~Hg~  140 (155)
                      +|||...|.+
T Consensus        82 pTrk~~~~ak   91 (93)
T KOG0899|consen   82 PTRKFFGHAK   91 (93)
T ss_pred             chhhhhcccc
Confidence            9999999975

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	155
3iz6_R	154	Localization Of The Small Subunit Ribosomal Protein		3e-74
2zkq_s	145	Structure Of A Mammalian Ribosomal 40s Subunit With		1e-56
3izb_R	142	Localization Of The Small Subunit Ribosomal Protein		3e-50
3zey_I	152	High-resolution Cryo-electron Microscopy Structure		3e-47
3j20_T	132	Promiscuous Behavior Of Proteins In Archaeal Riboso		1e-34
2xzm_S	144	Crystal Structure Of The Eukaryotic 40s Ribosomal S		3e-33
3j0l_S	125	Core Of Mammalian 80s Pre-Ribosome In Complex With		2e-32
1s1h_S	80	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		3e-30
3jyv_S	71	Structure Of The 40s Rrna And Proteins And PE TRNA		1e-25
2gy9_S	87	Structure Of The 30s Subunit Of A Pre-Translocation		5e-08
3fih_S	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		6e-08
1p6g_S	91	Real Space Refined Coordinates Of The 30s Subunit F		6e-08
1vs5_S	92	Crystal Structure Of The Bacterial Ribosome From Es		7e-08
1qkf_A	92	Solution Structure Of The Ribosomal Protein S19 Fro		3e-06
1fka_S	93	Structure Of Functionally Activated Small Ribosomal		3e-06
1pns_S	80	Crystal Structure Of A Streptomycin Dependent Ribos		6e-06
3fic_S	79	T. Thermophilus 70s Ribosome In Complex With Mrna,		7e-06
3mr8_S	78	Recognition Of The Amber Stop Codon By Release Fact		7e-06
3bbn_S	92	Homology Model For The Spinach Chloroplast 30s Subu		8e-06

>pdb|3IZ6|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 154

Iteration: 1
 Score =  273 bits (697), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 134/155 (86%), Positives = 142/155 (91%), Gaps = 1/155 (0%)
Query: 1   MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVE          QPKKRTF+K+S+RGVDLDALLDMSTD+L +LF ARARRRFQRGLK
Sbjct: 1   MADVEVETEVAAGA-QPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLK 59
Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPE
Sbjct: 60  RKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPE 119
Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>pdb|2ZKQ|SS Chain s, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 145

Iteration: 1
 Score =  214 bits (545), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 113/155 (72%), Positives = 133/155 (85%), Gaps = 10/155 (6%)
Query: 1   MADVETGVXXXXXXXQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MA+VE          Q KKRTF+KF++RGVDLD LLDMS ++L +L+SAR RRR  RGL+
Sbjct: 1   MAEVE----------QKKKRTFRKFTYRGVDLDQLLDMSYEQLMQLYSARQRRRLNRGLR 50
Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RK  +L+K+LRKAK+EAPP EKPE V+THLR+MII+PEM+GS++GVYNGKTFNQVEIKPE
Sbjct: 51  RKQHSLLKRLRKAKKEAPPMEKPEVVKTHLRDMIILPEMVGSMVGVYNGKTFNQVEIKPE 110
Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYL EFSI+YKPVKHGRPGIGATHSSRFIPLK
Sbjct: 111 MIGHYLGEFSITYKPVKHGRPGIGATHSSRFIPLK 145

>pdb|3IZB|R Chain R, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 142

Iteration: 1
 Score =  193 bits (491), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 92/138 (66%), Positives = 108/138 (78%), Gaps = 3/138 (2%)
Query: 18  KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
           KKR FK  S+RGVDL+ LL+MST++  KL  AR RRRF RG+  KP   +KKLR AK  A
Sbjct: 8   KKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAA 67
Query: 78  PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
           P  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI+Y PV+
Sbjct: 68  PENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVR 127
Query: 138 HGRPGIGATHSSRFIPLK 155
           HGR G     +SRFIPLK
Sbjct: 128 HGRAG---ATTSRFIPLK 142

>pdb|3ZEY|I Chain I, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 152

Iteration: 1
 Score =  183 bits (465), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 108/138 (78%)
Query: 18  KKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREA 77
           K+RTF KF++RG ++D LL ++ +E   L  ARARRR  R   R+   L+K+LR+AK+  
Sbjct: 15  KERTFHKFTYRGHEIDPLLALTEEEFKALVHARARRRMNRHADRRAPVLLKRLREAKKNV 74
Query: 78  PPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVK 137
             GEKP+ V+THLR+++I PEM+GS++G+YNG+ FN VEIK EMIGHYL EFS++YKPV 
Sbjct: 75  KAGEKPKAVKTHLRDVVITPEMVGSVVGIYNGRQFNAVEIKGEMIGHYLGEFSLTYKPVA 134
Query: 138 HGRPGIGATHSSRFIPLK 155
           HGRPG GATHSSRFIPLK
Sbjct: 135 HGRPGFGATHSSRFIPLK 152

>pdb|3J20|T Chain T, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 132

Iteration: 1
 Score =  141 bits (355), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 71/133 (53%), Positives = 97/133 (72%), Gaps = 4/133 (3%)
Query: 23  KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEK 82
           K+F +RG  L+ L++MS +ELA+LF AR RR  +RGL  +   L++K+R AK+    G+ 
Sbjct: 4   KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKK----GKY 59
Query: 83  PEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPG 142
            +P+RTH R+MII+PEM+G  I V+NGK F  VEIKPEMIGHYL EF+ + K V+HG PG
Sbjct: 60  KKPIRTHCRDMIILPEMVGLTIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPG 119
Query: 143 IGATHSSRFIPLK 155
           +GAT SS F+ +K
Sbjct: 120 VGATRSSMFVAVK 132

>pdb|2XZM|S Chain S, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 144

Iteration: 1
 Score =  137 bits (345), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 63/129 (48%), Positives = 90/129 (69%), Gaps = 9/129 (6%)
Query: 19  KRTFKKFSFRGVDLDALLDMST---------DELAKLFSARARRRFQRGLKRKPMALIKK 69
           K++ KKF+FRG  L+ L  +++         DELA LF A+ RRR +RG+  K    + K
Sbjct: 5   KKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNK 64
Query: 70  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 129
           +R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG YLAEF
Sbjct: 65  VRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEF 124
Query: 130 SISYKPVKH 138
           +++YKP  H
Sbjct: 125 AMTYKPTTH 133

>pdb|3J0L|S Chain S, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 125

Iteration: 1
 Score =  134 bits (337), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 61/125 (48%), Positives = 87/125 (69%), Gaps = 9/125 (7%)
Query: 25  FSFRGVDLDALLDMST---------DELAKLFSARARRRFQRGLKRKPMALIKKLRKAKR 75
           F+FRG  L+ L  +++         DELA LF A+ RRR +RG+  K    + K+R++K 
Sbjct: 1   FTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKE 60
Query: 76  EAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKP 135
           + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG YLAEF+++YKP
Sbjct: 61  KCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKP 120
Query: 136 VKHGR 140
             HG+
Sbjct: 121 TTHGK 125

>pdb|1S1H|S Chain S, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i Length = 80

Iteration: 1
 Score =  127 bits (318), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 57/80 (71%), Positives = 66/80 (82%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVE
Sbjct: 1   RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60
Query: 117 IKPEMIGHYLAEFSISYKPV 136
           I+PEM+GHYL EFSI+Y PV
Sbjct: 61  IRPEMLGHYLGEFSITYTPV 80

>pdb|3JYV|S Chain S, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 71

Iteration: 1
 Score =  111 bits (278), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 50/71 (70%), Positives = 58/71 (81%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           RG+  KP   +KKLR AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVE
Sbjct: 1   RGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVE 60
Query: 117 IKPEMIGHYLA 127
           I+PEM+GHYL 
Sbjct: 61  IRPEMLGHYLG 71

>pdb|2GY9|S Chain S, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 87

Iteration: 1
 Score = 53.1 bits (126), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 2   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 60
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 61  VTDEMVGHKLGEFA 74

>pdb|3FIH|S Chain S, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 30s Subunit, Trnas And The Ternary Complex. Length = 79

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 1   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 60  VTDEMVGHKLGEFA 73

>pdb|1P6G|S Chain S, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 91

Iteration: 1
 Score = 53.1 bits (126), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 2   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 60
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 61  VTDEMVGHKLGEFA 74

>pdb|1VS5|S Chain S, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 92

Iteration: 1
 Score = 53.1 bits (126), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K +P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 3   RSLKKGPFIDLHLLKKVEKAVESGDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 61
Query: 117 IKPEMIGHYLAEFS 130
           +  EM+GH L EF+
Sbjct: 62  VTDEMVGHKLGEFA 75

>pdb|1QKF|A Chain A, Solution Structure Of The Ribosomal Protein S19 From Thermus Thermophilus Length = 92

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 140
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 30  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 84

>pdb|1FKA|S Chain S, Structure Of Functionally Activated Small Ribosomal Subunit At 3.3 A Resolution Length = 93

Iteration: 1
 Score = 47.8 bits (112), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 86  VRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGR 140
           ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF+ +     HG+
Sbjct: 31  IKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPTRTYRGHGK 85

>pdb|1PNS|S Chain S, Crystal Structure Of A Streptomycin Dependent Ribosome From E. Coli, 30s Subunit Of 70s Ribosome. This File, 1pns, Contains The 30s Subunit, Two Trnas, And One Mrna Molecule. The 50s Ribosomal Subunit Is In File 1pnu. Length = 80

Iteration: 1
 Score = 46.6 bits (109), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 30/74 (40%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+        L K       GEK   ++T  R   IVPEM+G  I VYNGK    V 
Sbjct: 2   RSLKKGVFVDDHLLEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60
Query: 117 IKPEMIGHYLAEFS 130
           I   M+GH L EF+
Sbjct: 61  ITENMVGHKLGEFA 74

>pdb|3FIC|S Chain S, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 79

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 70  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 129
           L K       GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF
Sbjct: 13  LEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEF 71
Query: 130 S 130
           +
Sbjct: 72  A 72

>pdb|3MR8|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s Ribosomal Subunit Can Be Found In Pdb Entry 3ms1. Molecule B In The Same Asymmetric Unit Is Deposited As 3mrz (50s) And 3ms0 (30s). Length = 78

Iteration: 1
 Score = 46.2 bits (108), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/61 (44%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Query: 70  LRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEF 129
           L K       GEK   ++T  R   IVPEM+G  I VYNGK    V I   M+GH L EF
Sbjct: 13  LEKVLELNAKGEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEF 71
Query: 130 S 130
           +
Sbjct: 72  A 72

>pdb|3BBN|S Chain S, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 92

Iteration: 1
 Score = 46.2 bits (108), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
Query: 55  FQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQ 114
             R LK+ P      LRK ++     EK E + T  R   I+P MIG  I ++NG+    
Sbjct: 1   MTRSLKKNPFVANHLLRKIEKLNKKAEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHLP 59
Query: 115 VEIKPEMIGHYLAEFS 130
           + I   M+GH L EF+
Sbjct: 60  IYITDRMVGHKLGEFA 75
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	155
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	1e-82
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	1e-75
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	1e-66
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	2e-12
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	5e-12
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	7e-12
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	1e-11

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s 1s1h_S 3jyv_S* Length = 154

 Score =  239 bits (611), Expect = 1e-82
 Identities = 136/155 (87%), Positives = 144/155 (92%), Gaps = 1/155 (0%)

Query: 1   MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLK 60
           MADVE      AA  QPKKRTF+K+S+RGVDLDALLDMSTD+L +LF ARARRRFQRGLK
Sbjct: 1   MADVEVETEV-AAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLK 59

Query: 61  RKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPE 120
           RKPMALIKKLRKAK++AP GEKPEPVRTHLRNMIIVPEMIGSI+GVYNGKTFNQVEIKPE
Sbjct: 60  RKPMALIKKLRKAKKDAPAGEKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPE 119

Query: 121 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 155
           MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK
Sbjct: 120 MIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK 154

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S* Length = 142

 Score =  220 bits (563), Expect = 1e-75
 Identities = 93/144 (64%), Positives = 110/144 (76%), Gaps = 3/144 (2%)

Query: 12  AAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLR 71
           + A   KKR FK  S+RGVDL+ LL+MST++  KL  AR RRRF RG+  KP   +KKLR
Sbjct: 2   SQAVNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLR 61

Query: 72  KAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI 131
            AK  AP  EKP PVRTH+RNMIIVPEMIGS++G+YNGK FNQVEI+PEM+GHYL EFSI
Sbjct: 62  AAKLAAPENEKPAPVRTHMRNMIIVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSI 121

Query: 132 SYKPVKHGRPGIGATHSSRFIPLK 155
           +Y PV+HGR G     +SRFIPLK
Sbjct: 122 TYTPVRHGRAG---ATTSRFIPLK 142

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S Length = 144

 Score =  198 bits (505), Expect = 1e-66
 Identities = 65/140 (46%), Positives = 93/140 (66%), Gaps = 9/140 (6%)

Query: 16  QPKKRTFKKFSFRGVDLDALLDMS---------TDELAKLFSARARRRFQRGLKRKPMAL 66
              K++ KKF+FRG  L+ L  ++         +DELA LF A+ RRR +RG+  K    
Sbjct: 2   ADNKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKF 61

Query: 67  IKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYL 126
           + K+R++K + P GEKP PV+TH R+MI++PE++G I+GVYNGK F  VE+K +MIG YL
Sbjct: 62  VNKVRRSKEKCPAGEKPVPVKTHYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYL 121

Query: 127 AEFSISYKPVKHGRPGIGAT 146
           AEF+++YKP  HG+ G    
Sbjct: 122 AEFAMTYKPTTHGKTGAAGG 141

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 2qal_S* 1p6g_S 1p87_S 2aw7_S ... Length = 92

 Score = 57.5 bits (140), Expect = 5e-12
 Identities = 32/77 (41%), Positives = 43/77 (55%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L+KK+ KA      G+K +P+RT  R   I P MIG  I V+NG+   
Sbjct: 3   RSLKKGPFIDLHLLKKVEKAVES---GDK-KPLRTWSRRSTIFPNMIGLTIAVHNGRQHV 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V +  EM+GH L EF+
Sbjct: 59  PVFVTDEMVGHKLGEFA 75

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 92

 Score = 57.1 bits (139), Expect = 7e-12
 Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+ P     L++K+ K  ++    EK E + T  R   I+P MIG  I ++NG+   
Sbjct: 3   RSLKKNPFVANHLLRKIEKLNKK---AEK-EIIVTWSRASTIIPTMIGHTIAIHNGREHL 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            + I   M+GH L EF+
Sbjct: 59  PIYITDRMVGHKLGEFA 75

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ... Length = 93

 Score = 56.4 bits (137), Expect = 1e-11
 Identities = 30/77 (38%), Positives = 41/77 (53%), Gaps = 7/77 (9%)

Query: 57  RGLKRKPMA---LIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFN 113
           R LK+       L++K+ +   +   GEK   ++T  R   IVPEM+G  I VYNGK   
Sbjct: 3   RSLKKGVFVDDHLLEKVLELNAK---GEK-RLIKTWSRRSTIVPEMVGHTIAVYNGKQHV 58

Query: 114 QVEIKPEMIGHYLAEFS 130
            V I   M+GH L EF+
Sbjct: 59  PVYITENMVGHKLGEFA 75

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	155
3iz6_R	154	40S ribosomal protein S15 (S19P); eukaryotic ribos	100.0
3u5c_P	142	40S ribosomal protein S15; translation, ribosome,	100.0
3j20_T	132	30S ribosomal protein S19P; archaea, archaeal, KIN	100.0
2xzm_S	144	RPS15E; ribosome, translation; 3.93A {Tetrahymena	100.0
3bbn_S	92	Ribosomal protein S19; small ribosomal subunit, sp	100.0
3a1p_B	93	30S ribosomal protein S19; RIMM N-terminal domain,	100.0
3i1m_S	92	30S ribosomal protein S19; ribosome structure, pro	100.0
3r8n_S	79	30S ribosomal protein S19; protein biosynthesis, R	100.0

>3iz6_R 40S ribosomal protein S15 (S19P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 2zkq_s

Probab=100.00  E-value=4.7e-77  Score=469.80  Aligned_cols=154  Identities=88%  Similarity=1.340  Sum_probs=89.6

Q ss_pred             CCCcccchhhhhhhcCCcccceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCC
Q 031659            1 MADVETGVAAGAAAGQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPG   80 (155)
Q Consensus         1 ~~~~~~~~~~~~~~~~~Kkrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~   80 (155)
                      |||++++. .++||+++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+++++++++
T Consensus         1 ~~~~~~~~-~~~~~~~~kkrtf~kFtYrG~~ld~Ll~ms~eel~~L~~aR~RR~l~RGl~~k~~~Llkklrkak~~~~~~   79 (154)
T 3iz6_R            1 MADVEVET-EVAAGAQPKKRTFRKYSYRGVDLDALLDMSTDDLVQLFPARARRRFQRGLKRKPMALIKKLRKAKKDAPAG   79 (154)
T ss_dssp             ----------------------------------------------------------CCCCSCCCCSSCCSCCCSHHHH
T ss_pred             CCcccchh-HHHHHhhhcccceeeEEEecCcHHHHHhCCHHHHHHHccHHHhhhhhcCCCHHHHHHHHHHHHhhhccCcc
Confidence            78888873 33566888999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             CCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659           81 EKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus        81 ~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK  155 (155)
                      ++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+|||||||||||++||++++||+|||||||||+|||||
T Consensus        80 ~k~~~IkT~sR~s~IlPemVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~HgkpGiGAT~SS~FiPlK  154 (154)
T 3iz6_R           80 EKPEPVRTHLRNMIIVPEMIGSIVGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  154 (154)
T ss_dssp             HTHHHHHTCSCSCCCCCCCCCCCCGGGTTCCCEEESSSSEEECCCCSSCCSSCGGGTTSSHHHHHTTCC------
T ss_pred             cCCceeeecccCCEECHHHCCcEEEEEcCcceeeEEeccCccceeeeeeeeeeccCcCCCCCCCcccccccccCC
Confidence            899999999999999999999999999999999999999999999999999999999999999999999999997

>3u5c_P 40S ribosomal protein S15; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_R 3o30_I 3o2z_I 3u5g_P 1s1h_S 3jyv_S*

Probab=100.00  E-value=2.2e-70  Score=427.37  Aligned_cols=138  Identities=67%  Similarity=1.132  Sum_probs=123.2

Q ss_pred             cCCcccceeeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCce
Q 031659           15 GQPKKRTFKKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMI   94 (155)
Q Consensus        15 ~~~Kkrtf~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~   94 (155)
                      +++|||||++|||||+|||||++||+|||++|+||||||+++|||+++|..||++||+|+++++++++|++|+||+|+|+
T Consensus         5 ~~~kkrtf~kFtyrG~~ld~Ll~ms~e~l~~L~~aR~RR~l~RGl~~k~~~Ll~klrkak~~~~~~~k~~~ikT~sR~s~   84 (142)
T 3u5c_P            5 VNAKKRVFKTHSYRGVDLEKLLEMSTEDFVKLAPARVRRRFARGMTSKPAGFMKKLRAAKLAAPENEKPAPVRTHMRNMI   84 (142)
T ss_dssp             ---CCCCCCCCBSSSCBHHHHHTTCHHHHHHHSCHHHHHHHHSCCSSCSHHHHHHHHHHHHHSCSSSCCCCEEECCTTCB
T ss_pred             ccccccceeeEEEccccHHHHHcCCHHHHHHHhhHHHhhhhccCCCHHHHHHHHHHHHHhhhcCcccCCcceEeeccCCE
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659           95 IVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus        95 IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK  155 (155)
                      |+|+|||++|+|||||+|++|+|+||||||||||||+||+++.||+|||   |||+|||||
T Consensus        85 IlP~mVG~ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~Hg~~gi---~SS~fiplK  142 (142)
T 3u5c_P           85 IVPEMIGSVVGIYNGKAFNQVEIRPEMLGHYLGEFSITYTPVRHGRAGA---TTSRFIPLK  142 (142)
T ss_dssp             CCGGGTTCEEEEESSSSEEEEECCGGGTTSBGGGGSCCSCCCCCSCC--------------
T ss_pred             eChhHCCCEEEEEcCCeeEEEecccCccceeeeeeeeEecccccCCCCc---cccccccCC
Confidence            9999999999999999999999999999999999999999999999999   999999997

>3j20_T 30S ribosomal protein S19P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.7e-66  Score=401.42  Aligned_cols=129  Identities=54%  Similarity=0.905  Sum_probs=107.8

Q ss_pred             eeeeeecCChhHHhcCCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEeccCCceeccCcccc
Q 031659           23 KKFSFRGVDLDALLDMSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGS  102 (155)
Q Consensus        23 ~kFtYRG~~ld~L~~ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~  102 (155)
                      ++|||||+|||||++||+|||++|+||||||++.||++..+.+||++++++++++    +|++|+||+|+|+|+|+|||+
T Consensus         4 ~kftyrG~~ld~L~~ms~~~l~~L~~ar~rRslkkG~~~~~~~LlkKi~k~~~~~----~~~~ikT~sR~s~IlP~mVG~   79 (132)
T 3j20_T            4 KEFRYRGYTLEQLMNMSLEELARLFPARQRRSLKRGLTPEQKKLLRKIRLAKKGK----YKKPIRTHCRDMIILPEMVGL   79 (132)
T ss_dssp             --CCSSSSCHHHHHHHHHHHHHHHSCHHHHHHHHHCCCHHHHHHHHHHHHHSSSS----CCCCEEECCCSCBCCGGGTTC
T ss_pred             cEEEEcCCcHHHHHcCCHHHHHHHhhHHHHHHhhcCCchhhHHHHHHHHHHHhcc----CCcceEecccCCEeChHHCCc
Confidence            6899999999999999999999999999999999999988999999999998754    578999999999999999999


Q ss_pred             EEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCcCcccCC
Q 031659          103 IIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSSRFIPLK  155 (155)
Q Consensus       103 ~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS~FvplK  155 (155)
                      +|+|||||+|++|+|+||||||||||||+||+++.||+|||||||||+|||||
T Consensus        80 ti~VyNGK~f~~V~It~eMVGhkLGEFa~Trk~~~H~~pGigAT~sS~fiplK  132 (132)
T 3j20_T           80 TIYVHNGKEFVPVEIKPEMIGHYLGEFAPTRKKVEHGAPGVGATRSSMFVAVK  132 (132)
T ss_dssp             EEEEECSSSEEEEECCGGGTTSBGGGTSCSSCCCCCC----------------
T ss_pred             EEEEECCCeeeeeecccCccceeeeeeeeEeccCcCCCCCcCcccccccccCC
Confidence            99999999999999999999999999999999999999999999999999997

>2xzm_S RPS15E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_S 3j0o_S 3j0l_S 3j0p_S 3j0q_S

Probab=100.00  E-value=2.2e-64  Score=394.35  Aligned_cols=132  Identities=49%  Similarity=0.943  Sum_probs=114.1

Q ss_pred             cccceeeeeeecCChhHHhc---------CCHHHHHHHHHHHHhhhhhcCCCCCcchHHHHHHHhhhcCCCCCCCCceEe
Q 031659           18 KKRTFKKFSFRGVDLDALLD---------MSTDELAKLFSARARRRFQRGLKRKPMALIKKLRKAKREAPPGEKPEPVRT   88 (155)
Q Consensus        18 Kkrtf~kFtYRG~~ld~L~~---------ms~eel~~L~~ar~RR~~~Rgl~k~~~~Llkklrkak~~~~~~~kp~~Ikt   88 (155)
                      ||++|++|||||+|||||++         ||+|||++|+||||||++.||+..++.+||+++++++++++++++|++|+|
T Consensus         4 ~k~~~~kftyrG~~l~~L~~~~~~~~~~~m~~~~~~~l~~ar~RRSlkKGpfv~~~~LLkKi~k~~~~~~~~~k~~vIKT   83 (144)
T 2xzm_S            4 NKKSIKKFTFRGKGLEELTALASGSNSEKLISDELAALFDAKTRRRVKRGISEKYAKFVNKVRRSKEKCPAGEKPVPVKT   83 (144)
T ss_dssp             -------CCCCTTCHHHHHHHHSSTTCCSSSCHHHHHHSCHHHHHHHHHHCCSHHHHHHHHHHHHHHHSCTTTCCCCEEE
T ss_pred             cccceeeeeecCCcHHHHHhhhcccccccCCHHHHHHHhchhhhhhhhCCCCcccHHHHHHHHHHhhhhhccCCCceEEE
Confidence            67899999999999999999         999999999999999999999998899999999999998888889999999


Q ss_pred             ccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeeeecccCCCCCCCCCCCc
Q 031659           89 HLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISYKPVKHGRPGIGATHSS  149 (155)
Q Consensus        89 ~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Trk~~~Hg~pGigAT~sS  149 (155)
                      |+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||++++|++|||||||||
T Consensus        84 wsR~stIlPemVG~ti~VyNGK~fvpV~IteeMVGHKLGEFa~TRk~~~H~~pGigat~s~  144 (144)
T 2xzm_S           84 HYRSMIVIPELVGGIVGVYNGKEFVNVEVKFDMIGKYLAEFAMTYKPTTHGKTGAAGGKGK  144 (144)
T ss_dssp             CCTTCBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCCSCCCCCCC---------
T ss_pred             eccCcCcCHhHCCcEEEEecCCeeeeeeecccccceeeeceeeecccCccCCCCcCcccCC
Confidence            9999999999999999999999999999999999999999999999999999999999997

>3bbn_S Ribosomal protein S19; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=5.3e-39  Score=234.99  Aligned_cols=84  Identities=31%  Similarity=0.537  Sum_probs=77.3

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++++   .+ ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgpfv~~~Llkki~~~~~---~~-~~~~ikT~sR~stIlPemVG~ti~VhNGK~fv~V~It~~MVGhkLGEFa~   76 (92)
T 3bbn_S            1 MTRSLKKNPFVANHLLRKIEKLNK---KA-EKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAP   76 (92)
T ss_dssp             CCCSCSSCCCCCHHHHHHHHTTTT---TT-CCCCEEECCCSCCCCTTCTTCCEEEECSSCEEEECCCSSCSSCCSTTTSC
T ss_pred             CCCccccCcccCHHHHHHHHHHHh---cC-CCcceEEEecCcccChhhcCcEEEEecCceEEEEEEeccccceEecceee
Confidence            6899999997   89999998765   23 37899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCCC
Q 031659          132 SYKPVKHGRPG  142 (155)
Q Consensus       132 Trk~~~Hg~pG  142 (155)
                      ||+++.|++..
T Consensus        77 Trk~~~H~~~~   87 (92)
T 3bbn_S           77 TLNFRGHAKND   87 (92)
T ss_dssp             SSCCSSSCCCC
T ss_pred             eecccccCCCc
Confidence            99999998754

>3a1p_B 30S ribosomal protein S19; RIMM N-terminal domain, PRC-barrel domain, beta barrels, ribosome, 30S ribosomal subunit, ribosome biogenesis; 2.30A {Thermus thermophilus} PDB: 1fka_S 1gix_V* 1hnw_S* 1hnx_S* 1hnz_S* 1hr0_S 1ibk_S* 1ibl_S* 1ibm_S 1jgo_V* 1jgp_V* 1jgq_V* 1ml5_V* 1xmo_S* 1xmq_S* 1xnq_S* 1xnr_S* 1yl4_V 2b64_S* 2b9m_S* ...

Probab=100.00  E-value=5.4e-39  Score=235.42  Aligned_cols=83  Identities=35%  Similarity=0.549  Sum_probs=69.6

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++++.    ++|++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~Kgpfv~~~Llkki~~~~~~----~~~~~ikT~sR~stIlP~mVG~ti~VhNGK~fv~V~It~eMVGhkLGEFa~   76 (93)
T 3a1p_B            1 MPRSLKKGVFVDDHLLEKVLELNAK----GEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAP   76 (93)
T ss_dssp             --------CCCCHHHHHHHHHHHHH----TCCCCEEECCSSSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGCC
T ss_pred             CCCccccCcccCHHHHHHHHHHHhc----CCCcceEEEecCcCcChhhcCcEEEEecCceEEEEEeccCccceeecceee
Confidence            6899999997   899999998763    247899999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCCC
Q 031659          132 SYKPVKHGRP  141 (155)
Q Consensus       132 Trk~~~Hg~p  141 (155)
                      ||+++.|++.
T Consensus        77 Trk~~~H~~~   86 (93)
T 3a1p_B           77 TRTYRGHGKE   86 (93)
T ss_dssp             CSCCCCTTGG
T ss_pred             eecccccCcc
Confidence            9999999753

>3i1m_S 30S ribosomal protein S19; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_S* 3e1a_L 3e1c_L 1vs5_S 3i1o_S 3i1q_S 3i1s_S 3i1z_S 3i21_S 3izv_W* 3izw_W* 3kc4_S 3or9_S 3ora_S 3sfs_S* 3uoq_S* 4gaq_S* 4gas_S* 2qal_S* 1p6g_S ...

Probab=100.00  E-value=8.2e-39  Score=234.05  Aligned_cols=82  Identities=38%  Similarity=0.568  Sum_probs=72.0

Q ss_pred             hhcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeee
Q 031659           55 FQRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSI  131 (155)
Q Consensus        55 ~~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~  131 (155)
                      |.||+|++|+   +||++++++++..    ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+
T Consensus         1 M~RS~~KGpfv~~~Llkki~k~~~~~----~~~~ikT~sR~stIlP~mVG~ti~VyNGK~fv~V~It~~MVGhkLGEFa~   76 (92)
T 3i1m_S            1 MPRSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAP   76 (92)
T ss_dssp             --CCCCSSCCCCHHHHHHHHHHHHTC----CCSCCEECCTTCBCCGGGSSCCCEEECSSSEEECCCCTTCCSSBGGGSSC
T ss_pred             CCcccccCcCcCHHHHHHHHHHHhcC----CCcceEEecCCCEechHHCCCEEEEEcCceEEEEEeecCeeeeEeeeeee
Confidence            7899999997   9999999988643    46789999999999999999999999999999999999999999999999


Q ss_pred             eeecccCCC
Q 031659          132 SYKPVKHGR  140 (155)
Q Consensus       132 Trk~~~Hg~  140 (155)
                      ||+++.|++
T Consensus        77 TRk~~~H~~   85 (92)
T 3i1m_S           77 TRTYRGHAA   85 (92)
T ss_dssp             CCCCC----
T ss_pred             EecccccCc
Confidence            999999986

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	155
d2gy9s1	79	d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherich	5e-26
d2uubs1	80	d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus t	1e-24

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

 Score = 92.1 bits (229), Expect = 5e-26
 Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+ P   +  L+K ++    G+K  P+RT  R   I P MIG  I V+NG+    V 
Sbjct: 1   RSLKKGPFIDLHLLKKVEKAVESGDKK-PLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVF 59

Query: 117 IKPEMIGHYLAEFSI 131
           +  EM+GH L EF+ 
Sbjct: 60  VTDEMVGHKLGEFAP 74

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]} Length = 80

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

 Score = 88.6 bits (220), Expect = 1e-24
 Identities = 30/75 (40%), Positives = 36/75 (48%), Gaps = 1/75 (1%)

Query: 57  RGLKRKPMALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVE 116
           R LK+        L K       GEK   ++T  R   IVPEM+G  I VYNGK    V 
Sbjct: 2   RSLKKGVFVDDHLLEKVLELNAKGEKR-LIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVY 60

Query: 117 IKPEMIGHYLAEFSI 131
           I   M+GH L EF+ 
Sbjct: 61  ITENMVGHKLGEFAP 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	155
d2uubs1	80	Ribosomal protein S19 {Thermus thermophilus [TaxId	100.0
d2gy9s1	79	Ribosomal protein S19 {Escherichia coli [TaxId: 56	100.0

>d2uubs1 d.28.1.1 (S:2-81) Ribosomal protein S19 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.6e-36  Score=211.78  Aligned_cols=76  Identities=36%  Similarity=0.531  Sum_probs=68.9

Q ss_pred             hcCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeee
Q 031659           56 QRGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSIS  132 (155)
Q Consensus        56 ~Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~T  132 (155)
                      .||+||+|+   +||+++.++..    ..++++|+||+|+|+|+|+|||++|+|||||+|++|+|++|||||||||||+|
T Consensus         1 ~RS~~Kgpfv~~~Llkki~~~~~----~~~k~~IkT~sR~s~IlP~~VG~~~~VyNGk~fv~v~It~eMVGhklGEFa~T   76 (80)
T d2uubs1           1 PRSLKKGVFVDDHLLEKVLELNA----KGEKRLIKTWSRRSTIVPEMVGHTIAVYNGKQHVPVYITENMVGHKLGEFAPT   76 (80)
T ss_dssp             CCCCCSSCCCCHHHHHHHHTTTS----SCCCSEEEECCSSSBCCGGGTTCEEEEECSSCEEEEECCGGGTTSBSGGGSCC
T ss_pred             CCCcccCcCccHHHHHHHHHHHh----cCCCCcEeEeccccEechHHcceEEEEEeCCeeEeEEeccCcccceeeccccc
Confidence            389999985   89999987654    23467899999999999999999999999999999999999999999999999


Q ss_pred             eec
Q 031659          133 YKP  135 (155)
Q Consensus       133 rk~  135 (155)
                      |++
T Consensus        77 R~f   79 (80)
T d2uubs1          77 RTY   79 (80)
T ss_dssp             CCC
T ss_pred             ccC
Confidence            975

>d2gy9s1 d.28.1.1 (S:2-80) Ribosomal protein S19 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein S19
superfamily: Ribosomal protein S19
family: Ribosomal protein S19
domain: Ribosomal protein S19
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.5e-36  Score=210.87  Aligned_cols=75  Identities=40%  Similarity=0.602  Sum_probs=68.8

Q ss_pred             cCCCCCcc---hHHHHHHHhhhcCCCCCCCCceEeccCCceeccCccccEEEEecCCcccccccCCCcceeeeeeeeeee
Q 031659           57 RGLKRKPM---ALIKKLRKAKREAPPGEKPEPVRTHLRNMIIVPEMIGSIIGVYNGKTFNQVEIKPEMIGHYLAEFSISY  133 (155)
Q Consensus        57 Rgl~k~~~---~Llkklrkak~~~~~~~kp~~Ikt~~R~~~IlP~mVG~~v~VyNGK~f~~v~I~~eMIGhkLGEFa~Tr  133 (155)
                      ||+||+|+   +||+++.++....    ++++|+||+|+|+|+|+|||++|+|||||+|++|+|+||||||||||||+||
T Consensus         1 RS~~KGpfv~~~Llkki~k~~~~~----~~~~IkT~sR~s~IlP~~VG~~i~VyNGk~fv~v~It~eMVGhklGEFa~TR   76 (79)
T d2gy9s1           1 RSLKKGPFIDLHLLKKVEKAVESG----DKKPLRTWSRRSTIFPNMIGLTIAVHNGRQHVPVFVTDEMVGHKLGEFAPTR   76 (79)
T ss_dssp             CCCTTCCCCCTTTTSHHHHGGGGS----CCSCEEESCTTSBCCGGGTTCEEEEECSSSEEEEECCGGGTTSBGGGGSCSS
T ss_pred             CCCccCccccHHHHHHHHHHHhcC----CCCcEEEEecccccChHHhCcEEEEEeCCeeEEEEeccCccceeeecccccc
Confidence            89999985   8999999876533    3568999999999999999999999999999999999999999999999999


Q ss_pred             ec
Q 031659          134 KP  135 (155)
Q Consensus       134 k~  135 (155)
                      ++
T Consensus        77 ~f   78 (79)
T d2gy9s1          77 TY   78 (79)
T ss_dssp             CC
T ss_pred             cC
Confidence            75