Citrus Sinensis ID: 031731

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150----
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF
ccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
ccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEcc
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLqqlqdesnpDFVAEVVSLFFADSERLLNDLTRaldqptidfkmvdshvhqlkgssssigaERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAaggsipmmelsf
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLkgssssigaeRIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQivaaggsipmmelsf
MEVGQMQRRLLEYTKSLFMEGVLDNqflqlqqlqDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF
*********LLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQL******IGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAG**********
**************KSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFC****IEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF
MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF
*EVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query154 2.2.26 [Sep-21-2011]
Q9ZNV9154 Histidine-containing phos yes no 1.0 1.0 0.720 3e-57
Q8L9T7157 Histidine-containing phos no no 0.980 0.961 0.552 2e-45
Q9SAZ5155 Histidine-containing phos no no 0.974 0.967 0.562 2e-45
Q9ZNV8156 Histidine-containing phos no no 0.980 0.967 0.506 3e-42
Q9LU15127 Histidine-containing phos no no 0.779 0.944 0.475 2e-31
Q6VAK4149 Histidine-containing phos no no 0.922 0.953 0.426 4e-31
Q9SSC9154 Histidine-containing phos no no 0.967 0.967 0.476 2e-21
O94321295 Multistep phosphorelay re yes no 0.551 0.288 0.298 0.0003
>sp|Q9ZNV9|AHP1_ARATH Histidine-containing phosphotransfer protein 1 OS=Arabidopsis thaliana GN=AHP1 PE=1 SV=1 Back     alignment and function desciption
 Score =  220 bits (560), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 111/154 (72%), Positives = 136/154 (88%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           M++ Q Q+ L +YTKSLF+EG+LD+QFLQLQQLQDESNPDFV++VV+LFF DS+R+LNDL
Sbjct: 1   MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
           + +LDQ  +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E C  CLQQVK
Sbjct: 61  SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVK 120

Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF 154
           QEY LVKN+LETLF++EQQIVA+GG IP +EL F
Sbjct: 121 QEYYLVKNRLETLFKLEQQIVASGGMIPAVELGF 154
Functions as two-component phosphorelay mediators between cytokinin sensor histidine kinases and response regulators (B-type ARRs). Plays an important role in propagating cytokinin signal transduction through the multistep His-to-Asp phosphorelay.
Arabidopsis thaliana (taxid: 3702)
>sp|Q8L9T7|AHP5_ARATH Histidine-containing phosphotransfer protein 5 OS=Arabidopsis thaliana GN=AHP5 PE=1 SV=2 Back     alignment and function description
>sp|Q9SAZ5|AHP3_ARATH Histidine-containing phosphotransfer protein 3 OS=Arabidopsis thaliana GN=AHP3 PE=1 SV=2 Back     alignment and function description
>sp|Q9ZNV8|AHP2_ARATH Histidine-containing phosphotransfer protein 2 OS=Arabidopsis thaliana GN=AHP2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LU15|AHP4_ARATH Histidine-containing phosphotransfer protein 4 OS=Arabidopsis thaliana GN=AHP4 PE=1 SV=2 Back     alignment and function description
>sp|Q6VAK4|HP1_ORYSJ Histidine-containing phosphotransfer protein 1 OS=Oryza sativa subsp. japonica GN=HP1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSC9|AHP6_ARATH Histidine-containing phosphotransfer protein 6 OS=Arabidopsis thaliana GN=AHP6 PE=2 SV=2 Back     alignment and function description
>sp|O94321|MPR1_SCHPO Multistep phosphorelay regulator 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mpr1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
255551577154 Histidine-containing phosphotransfer pro 1.0 1.0 0.831 4e-68
225432442152 PREDICTED: histidine-containing phosphot 0.974 0.986 0.786 5e-65
449454450154 PREDICTED: histidine-containing phosphot 1.0 1.0 0.753 9e-64
13774348151 histidine-containing phosphotransfer pro 0.980 1.0 0.774 6e-63
351725957154 uncharacterized protein LOC100306648 [Gl 1.0 1.0 0.805 8e-62
351725165155 uncharacterized protein LOC100500044 [Gl 0.993 0.987 0.805 3e-61
351727885155 uncharacterized protein LOC100306589 [Gl 0.993 0.987 0.798 5e-61
298103706154 putative histidine phosphotransfer prote 0.993 0.993 0.797 3e-60
388510460154 unknown [Lotus japonicus] 1.0 1.0 0.779 3e-60
359479780151 PREDICTED: histidine-containing phosphot 0.980 1.0 0.708 4e-60
>gi|255551577|ref|XP_002516834.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] gi|223543922|gb|EEF45448.1| Histidine-containing phosphotransfer protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  262 bits (669), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 128/154 (83%), Positives = 136/154 (88%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQMQR  +EYTKSLF EG+LD QF QLQ LQDESNPDFV EVVSLFFADSERLLN+L
Sbjct: 1   MEVGQMQRTWVEYTKSLFREGILDGQFTQLQLLQDESNPDFVVEVVSLFFADSERLLNEL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
           T ALDQ  IDFK VD+HVHQLKGSSSSIGA+R+KNACVAFRNFCE QN EGC+ CLQQVK
Sbjct: 61  TSALDQQIIDFKRVDAHVHQLKGSSSSIGAQRVKNACVAFRNFCEGQNPEGCLKCLQQVK 120

Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF 154
           QEY LVKNKLE L R+EQQIVAAGGSIPM ELSF
Sbjct: 121 QEYYLVKNKLEALIRLEQQIVAAGGSIPMEELSF 154

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225432442|ref|XP_002278411.1| PREDICTED: histidine-containing phosphotransfer protein 1 isoform 1 [Vitis vinifera] gi|297736940|emb|CBI26141.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449454450|ref|XP_004144968.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Cucumis sativus] gi|449471211|ref|XP_004153242.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Cucumis sativus] gi|449515185|ref|XP_004164630.1| PREDICTED: histidine-containing phosphotransfer protein 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|13774348|gb|AAK38843.1|AF346308_1 histidine-containing phosphotransfer protein [Catharanthus roseus] Back     alignment and taxonomy information
>gi|351725957|ref|NP_001238134.1| uncharacterized protein LOC100306648 [Glycine max] gi|255629181|gb|ACU14935.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351725165|ref|NP_001236059.1| uncharacterized protein LOC100500044 [Glycine max] gi|255628767|gb|ACU14728.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|351727885|ref|NP_001237176.1| uncharacterized protein LOC100306589 [Glycine max] gi|255628993|gb|ACU14841.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|298103706|emb|CBM42554.1| putative histidine phosphotransfer protein 6 [Populus x canadensis] Back     alignment and taxonomy information
>gi|388510460|gb|AFK43296.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|359479780|ref|XP_002272153.2| PREDICTED: histidine-containing phosphotransfer protein 5-like [Vitis vinifera] gi|296086667|emb|CBI32302.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query154
TAIR|locus:2089900154 AHP1 "histidine-containing pho 1.0 1.0 0.662 6.3e-53
TAIR|locus:2020868157 AHP5 "histidine-containing pho 0.980 0.961 0.519 4.2e-40
TAIR|locus:2175643155 AHP3 "histidine-containing pho 0.974 0.967 0.529 2.9e-39
TAIR|locus:2093817156 AHP2 "histidine-containing pho 0.980 0.967 0.473 8e-37
TAIR|locus:2016339154 HP6 "histidine phosphotransfer 0.954 0.954 0.429 4e-26
TAIR|locus:504955364167 AT4G04402 "AT4G04402" [Arabido 0.863 0.796 0.333 1.8e-14
UNIPROTKB|G4MTL0135 MGG_07173 "Uncharacterized pro 0.649 0.740 0.252 4.3e-06
UNIPROTKB|Q884X1118 PSPTO_1965 "Hpt domain protein 0.597 0.779 0.25 2.4e-05
POMBASE|SPBC725.02295 mpr1 "histidine-containing res 0.5 0.261 0.291 0.0008
TAIR|locus:2089900 AHP1 "histidine-containing phosphotransmitter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 548 (198.0 bits), Expect = 6.3e-53, P = 6.3e-53
 Identities = 102/154 (66%), Positives = 127/154 (82%)

Query:     1 MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
             M++ Q Q+ L +YTKSLF+EG+LD+         DESNPDFV++VV+LFF DS+R+LNDL
Sbjct:     1 MDLVQKQKSLQDYTKSLFLEGILDSQFLQLQQLQDESNPDFVSQVVTLFFQDSDRILNDL 60

Query:    61 TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
             + +LDQ  +DFK VD HVHQLKGSSSSIGA+R+KNACV FR+FCE+QN+E C  CLQQVK
Sbjct:    61 SLSLDQQVVDFKKVDPHVHQLKGSSSSIGAQRVKNACVVFRSFCEQQNVEACHRCLQQVK 120

Query:   121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELSF 154
             QEY LVKN+LETLF++EQQIVA+GG IP +EL F
Sbjct:   121 QEYYLVKNRLETLFKLEQQIVASGGMIPAVELGF 154
GO:0000160 "phosphorelay signal transduction system" evidence=IEA;IMP
GO:0004871 "signal transducer activity" evidence=IEA
GO:0009927 "histidine phosphotransfer kinase activity" evidence=ISS;IDA
GO:0005515 "protein binding" evidence=IPI
GO:0043424 "protein histidine kinase binding" evidence=IPI
GO:0005737 "cytoplasm" evidence=IDA;NAS
GO:0009736 "cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS
GO:0005634 "nucleus" evidence=IDA
GO:0080036 "regulation of cytokinin mediated signaling pathway" evidence=IGI
GO:0009553 "embryo sac development" evidence=IGI
GO:0016049 "cell growth" evidence=IGI
GO:0051301 "cell division" evidence=IGI
GO:0000041 "transition metal ion transport" evidence=RCA
GO:0010029 "regulation of seed germination" evidence=RCA
GO:0015698 "inorganic anion transport" evidence=RCA
GO:0031537 "regulation of anthocyanin metabolic process" evidence=RCA
GO:0048831 "regulation of shoot system development" evidence=RCA
TAIR|locus:2020868 AHP5 "histidine-containing phosphotransfer factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2175643 AHP3 "histidine-containing phosphotransmitter 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2093817 AHP2 "histidine-containing phosphotransmitter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2016339 HP6 "histidine phosphotransfer protein 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:504955364 AT4G04402 "AT4G04402" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G4MTL0 MGG_07173 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
UNIPROTKB|Q884X1 PSPTO_1965 "Hpt domain protein" [Pseudomonas syringae pv. tomato str. DC3000 (taxid:223283)] Back     alignment and assigned GO terms
POMBASE|SPBC725.02 mpr1 "histidine-containing response regulator phosphotransferase Mpr1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZNV9AHP1_ARATHNo assigned EC number0.72071.01.0yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
cd0008894 cd00088, HPT, Histidine Phosphotransfer domain, in 8e-11
pfam0162787 pfam01627, Hpt, Hpt domain 2e-10
COG2198122 COG2198, ArcB, FOG: HPt domain [Signal transductio 2e-06
smart0007392 smart00073, HPT, Histidine Phosphotransfer domain 9e-04
>gnl|CDD|238041 cd00088, HPT, Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E Back     alignment and domain information 
 Score = 55.1 bits (133), Expect = 8e-11
 Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 11/93 (11%)

Query: 42  VAEVVSLFFADSERLLNDLTRALDQ--PTIDFKMVDSHVHQLKGSSSSIGAERIKNACVA 99
           + E++ LF  ++E LL +L RAL +     D   +    H LKGS++S+G +R+      
Sbjct: 1   MEELLELFLEEAEELLEELERALLELEDAEDLNEIFRAAHTLKGSAASLGLQRLAQLAHQ 60

Query: 100 FRNFCEEQN---------IEGCMSCLQQVKQEY 123
             +  +            I+  +  L  +K E 
Sbjct: 61  LEDLLDALRDGLEVTPELIDLLLDALDALKAEL 93

coli there are 62 two-component proteins involved in a variety of processes such as chemotaxis, osmoregulation, metabolism and transport 1; also present in both Gram positive and Gram negative pathogenic bacteria where they regulate basic housekeeping functions and control expression of toxins and other proteins important for pathogenesis; in archaea and eukaryotes, two-component pathways constitute a very small number of all signaling systems; in fungi they mediate environmental stress responses and, in pathogenic yeast, hyphal development. In Dictyostelium and in plants, they are involved in important processes such as osmoregulation, cell growth, and differentiation; to date two-component proteins have not been identified in animals; in most prokaryotic systems, the output response is effected directly by the RR, which functions as a transcription factor while in eukaryotic systems, two-component proteins are found at the beginning of signaling pathways where they interface with more conventional eukaryotic signaling strategies such as MAP kinase and cyclic nucleotide cascades. Length = 94
>gnl|CDD|216615 pfam01627, Hpt, Hpt domain Back     alignment and domain information
>gnl|CDD|225108 COG2198, ArcB, FOG: HPt domain [Signal transduction mechanisms] Back     alignment and domain information
>gnl|CDD|197502 smart00073, HPT, Histidine Phosphotransfer domain Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 154
KOG4747150 consensus Two-component phosphorelay intermediate 99.9
PF0162790 Hpt: Hpt domain; InterPro: IPR008207 Two-component 99.63
COG2198122 ArcB FOG: HPt domain [Signal transduction mechanis 99.62
smart0007387 HPT Histidine Phosphotransfer domain. Contains an 99.49
cd0008894 HPT Histidine Phosphotransfer domain, involved in 99.39
TIGR02956968 TMAO_torS TMAO reductase sytem sensor TorS. This p 99.27
PRK11091779 aerobic respiration control sensor protein ArcB; P 99.09
PRK10618894 phosphotransfer intermediate protein in two-compon 99.09
PRK11107919 hybrid sensory histidine kinase BarA; Provisional 98.69
PRK11466914 hybrid sensory histidine kinase TorS; Provisional 98.64
COG0643 716 CheA Chemotaxis protein histidine kinase and relat 98.12
PRK10547 670 chemotaxis protein CheA; Provisional 98.09
PRK099591197 hybrid sensory histidine kinase in two-component r 97.47
PRK15347921 two component system sensor kinase SsrA; Provision 96.9
PF0774378 HSCB_C: HSCB C-terminal oligomerisation domain; In 92.07
TIGR03042142 PS_II_psbQ_bact photosystem II protein PsbQ. This 88.88
PLN02956185 PSII-Q subunit 88.67
TIGR00714157 hscB Fe-S protein assembly co-chaperone HscB. This 88.34
PRK01356166 hscB co-chaperone HscB; Provisional 86.98
cd0832386 CARD_APAF1 Caspase activation and recruitment doma 86.58
PF13779 820 DUF4175: Domain of unknown function (DUF4175) 81.33
>KOG4747 consensus Two-component phosphorelay intermediate involved in MAP kinase cascade regulation [Signal transduction mechanisms] Back     alignment and domain information 
Probab=99.90  E-value=1.3e-22  Score=146.69  Aligned_cols=145  Identities=65%  Similarity=1.026  Sum_probs=136.8

Q ss_pred             hhHHHHHHHHHHHhhhhhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhh
Q 031731            3 VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLK   82 (154)
Q Consensus         3 ~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LK   82 (154)
                      |-+|++.+.+|.++++++||+|++|.+|++|.++..|.|+.+++..|++++.+.+..++.|+..+. |+..+....|.+|
T Consensus         5 i~~~q~~~~d~~~sl~~qgild~qF~qlq~lqD~~~p~fv~ev~~~fF~~s~~~i~~~r~ald~~~-d~k~~~~~~hqlk   83 (150)
T KOG4747|consen    5 IISMQRDVSDYTKSLFDQGILDSQFLQLQELQDDSSPDFVEEVVGLFFEDSERLINNLRLALDCER-DFKKLGSHVHQLK   83 (150)
T ss_pred             HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhcccCccHHHHHHHHHHHHHHHHHHHHHHHHhhHh-HHHHHHHHHHHcc
Confidence            568999999999999999999999999999999999999999999999999999999999998764 9999999999999


Q ss_pred             hhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHh-hcCCCC
Q 031731           83 GSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVA-AGGSIP  148 (154)
Q Consensus        83 Gss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~-~~~~~~  148 (154)
                      |+|..+||.++...|..+-..|+.++.+.+...+++++.++..++..|+.++..+||..+ .|+..|
T Consensus        84 gssssIGa~kvk~~c~~~~~~~~~~n~egcvr~l~~v~ie~~~lkkkL~~~f~L~rq~i~~~~~~n~  150 (150)
T KOG4747|consen   84 GSSSSIGALKVKKVCVGFNEFCEAGNIEGCVRCLQQVKIEYSLLKKKLETLFQLERQEILAAGGTNP  150 (150)
T ss_pred             CchhhhhHHHHHHHHHHHHHHHhhccchhHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            999999999999999999999999999998899999999999999999999999999554 555544

>PF01627 Hpt: Hpt domain; InterPro: IPR008207 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions [] Back     alignment and domain information
>COG2198 ArcB FOG: HPt domain [Signal transduction mechanisms] Back     alignment and domain information
>smart00073 HPT Histidine Phosphotransfer domain Back     alignment and domain information
>cd00088 HPT Histidine Phosphotransfer domain, involved in signalling through a two part component systems in which an autophosphorylating histidine protein kinase serves as a phosphoryl donor to a response regulator protein; the response regulator protein is modulated by phosphorylation and dephosphorylation of a conserved aspartic acid residue; two-component proteins are abundant in most eubacteria; In E Back     alignment and domain information
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS Back     alignment and domain information
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional Back     alignment and domain information
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional Back     alignment and domain information
>PRK11107 hybrid sensory histidine kinase BarA; Provisional Back     alignment and domain information
>PRK11466 hybrid sensory histidine kinase TorS; Provisional Back     alignment and domain information
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms] Back     alignment and domain information
>PRK10547 chemotaxis protein CheA; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>PRK15347 two component system sensor kinase SsrA; Provisional Back     alignment and domain information
>PF07743 HSCB_C: HSCB C-terminal oligomerisation domain; InterPro: IPR009073 This entry represents the C-terminal oligomerisation domain found in HscB (heat shock cognate protein B), which is also known as HSC20 (20K heat shock cognate protein) Back     alignment and domain information
>TIGR03042 PS_II_psbQ_bact photosystem II protein PsbQ Back     alignment and domain information
>PLN02956 PSII-Q subunit Back     alignment and domain information
>TIGR00714 hscB Fe-S protein assembly co-chaperone HscB Back     alignment and domain information
>PRK01356 hscB co-chaperone HscB; Provisional Back     alignment and domain information
>cd08323 CARD_APAF1 Caspase activation and recruitment domain similar to that found in Apoptotic Protease-Activating Factor 1 Back     alignment and domain information
>PF13779 DUF4175: Domain of unknown function (DUF4175) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3us6_A153 Crystal Structure Of Histidine-Containing Phosphotr 4e-61
4euk_B159 Crystal Structure Length = 159 2e-58
1yvi_A149 X-Ray Structure Of Putative Histidine-Containing Ph 2e-27
1wn0_A145 Crystal Structure Of Histidine-containing Phosphotr 1e-25
>pdb|3US6|A Chain A, Crystal Structure Of Histidine-Containing Phosphotransfer Protein Mthpt1 From Medicago Truncatula Length = 153 Back     alignment and structure 
Iteration: 1

 Score =  229 bits (585), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 109/153 (71%), Positives = 128/153 (83%)
Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNXXXXXXXXXDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQM+R+ ++Y KS+FMEG LD          DE+NP+FV EVVSLFF DSER+L DL
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60
Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
           + A+DQ +IDFK VD+HVHQ KGSS+SIGA+R+KN+CVAFRNFCEEQNI+ C  CLQQVK
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120
Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELS 153
           QEY LVKNKLETL R+EQQIVAAGGSIPMMEL+
Sbjct: 121 QEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN 153
>pdb|4EUK|B Chain B, Crystal Structure Length = 159 Back     alignment and structure
>pdb|1YVI|A Chain A, X-Ray Structure Of Putative Histidine-Containing Phosphotransfer Protein From Rice, Ak104879 Length = 149 Back     alignment and structure
>pdb|1WN0|A Chain A, Crystal Structure Of Histidine-containing Phosphotransfer Protein, Zmhp2, From Maize Length = 145 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query154
3us6_A153 Histidine-containing phosphotransfer protein type 2e-58
1yvi_A149 Histidine-containing phosphotransfer protein; stru 5e-55
2r25_A167 Phosphorelay intermediate protein YPD1; alpha5-BET 3e-24
1y6d_A120 Phosphorelay protein LUXU; phosphotransferase, fou 4e-16
2a0b_A125 HPT domain; sensory transduction, histidine kinase 2e-10
3myf_A119 Sensor protein; HPT, histidine kinase, PSI, MCSG, 3e-08
2ooc_A113 Histidine phosphotransferase; NP_419930.1, hypothe 5e-07
3iqt_A123 Signal transduction histidine-protein kinase BARA; 1e-06
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Length = 153 Back     alignment and structure
 Score =  177 bits (451), Expect = 2e-58
 Identities = 118/153 (77%), Positives = 137/153 (89%)

Query: 1   MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDL 60
           MEVGQM+R+ ++Y KS+FMEG LD QFLQLQQLQDE+NP+FV EVVSLFF DSER+L DL
Sbjct: 1   MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDL 60

Query: 61  TRALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVK 120
           + A+DQ +IDFK VD+HVHQ KGSS+SIGA+R+KN+CVAFRNFCEEQNI+ C  CLQQVK
Sbjct: 61  SFAVDQQSIDFKKVDAHVHQFKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVK 120

Query: 121 QEYCLVKNKLETLFRMEQQIVAAGGSIPMMELS 153
           QEY LVKNKLETL R+EQQIVAAGGSIPMMEL+
Sbjct: 121 QEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN 153
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Length = 149 Back     alignment and structure
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Length = 167 Back     alignment and structure
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Length = 120 Back     alignment and structure
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Length = 125 Back     alignment and structure
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Length = 119 Back     alignment and structure
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Length = 113 Back     alignment and structure
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Length = 123 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
3us6_A153 Histidine-containing phosphotransfer protein type 100.0
1yvi_A149 Histidine-containing phosphotransfer protein; stru 99.98
2r25_A167 Phosphorelay intermediate protein YPD1; alpha5-BET 99.9
2a0b_A125 HPT domain; sensory transduction, histidine kinase 99.86
3myf_A119 Sensor protein; HPT, histidine kinase, PSI, MCSG, 99.82
3iqt_A123 Signal transduction histidine-protein kinase BARA; 99.79
1y6d_A120 Phosphorelay protein LUXU; phosphotransferase, fou 99.72
2ooc_A113 Histidine phosphotransferase; NP_419930.1, hypothe 99.67
1sr2_A116 Putative sensor-like histidine kinase YOJN; four-h 99.66
1tqg_A105 Chemotaxis protein CHEA; histidine kinase, phospho 99.52
2ld6_A139 Chemotaxis protein CHEA; TMP1, transferase; NMR {T 99.38
1i5n_A146 Chemotaxis protein CHEA; four-helix bundle, transf 99.34
2lch_A113 Protein OR38; structural genomics, northeast struc 99.33
3kyj_A144 CHEA3, putative histidine protein kinase; protein- 98.99
2lp4_A225 Chemotaxis protein CHEA; two component signaling s 98.72
3uo3_A181 J-type CO-chaperone JAC1, mitochondrial; structura 88.58
3zsu_A130 TLL2057 protein, cyanoq; photosystem II assembly, 86.23
3bvo_A207 CO-chaperone protein HSCB, mitochondrial precurso; 85.55
3ls0_A133 SLL1638 protein, PSBQ; photosynthesis, four helix 85.46
1vyk_A149 Oxygen-evolving enhancer protein 3; photosystem II 80.03
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula} Back     alignment and structure
Probab=100.00  E-value=9.9e-39  Score=235.42  Aligned_cols=153  Identities=77%  Similarity=1.181  Sum_probs=144.8

Q ss_pred             CchhHHHHHHHHHHHhhhhhhchHHHHHHHHhhhccCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Q 031731            1 MEVGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQ   80 (154)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~   80 (154)
                      |++++|++++.+||++++++|+||++|++|.+|.++++++|+.+++..|++++++.+..|..+++.++.|+..+.+.+|+
T Consensus         1 ~~~~~~~~~~~~~~~~l~~~g~LD~~f~qL~~L~~~~~~~~~~ell~~Fl~d~~~~l~~L~~al~~~~~D~~~l~~~aH~   80 (153)
T 3us6_A            1 MEVGQMRRQWVDYIKSMFMEGFLDGQFLQLQQLQDENNPEFVFEVVSLFFDDSERILKDLSFAVDQQSIDFKKVDAHVHQ   80 (153)
T ss_dssp             -CHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHTCBTTBTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHhcccccchHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999998765589999999999


Q ss_pred             hhhhhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHhhcCCCCccccC
Q 031731           81 LKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIVAAGGSIPMMELS  153 (154)
Q Consensus        81 LKGss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~  153 (154)
                      |||||+|+||.+|+.+|..||.+++.++.+.+...+++|+.+|.+++.+|++|+..++|+.++||++|+|+++
T Consensus        81 LKGss~~lGa~~l~~~c~~lE~~~~~~~~~~~~~~l~~l~~e~~~v~~~L~~~~~le~q~~~~~~~~~~~~~~  153 (153)
T 3us6_A           81 FKGSSASIGAQRVKNSCVAFRNFCEEQNIDACRRCLQQVKQEYLLVKNKLETLLRLEQQIVAAGGSIPMMELN  153 (153)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCC----
T ss_pred             HHHHHHHhcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999875
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A Back     alignment and structure
>2r25_A Phosphorelay intermediate protein YPD1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: a.24.10.2 PDB: 1c03_A 1oxk_A 1oxb_A 1c02_A 1qsp_A Back     alignment and structure
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A Back     alignment and structure
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP} Back     alignment and structure
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli} Back     alignment and structure
>1y6d_A Phosphorelay protein LUXU; phosphotransferase, four-helix bundle, quorum sensing; NMR {Vibrio harveyi} SCOP: a.24.10.5 Back     alignment and structure
>2ooc_A Histidine phosphotransferase; NP_419930.1, hypothetical protein, structural genomics, JOIN for structural genomics, JCSG; HET: MSE PG4; 1.52A {Caulobacter crescentus} SCOP: a.24.10.6 Back     alignment and structure
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4 Back     alignment and structure
>1tqg_A Chemotaxis protein CHEA; histidine kinase, phosphotransfer, signal transduction, transferase; 0.98A {Thermotoga maritima} SCOP: a.24.10.3 Back     alignment and structure
>2ld6_A Chemotaxis protein CHEA; TMP1, transferase; NMR {Thermotoga maritima} Back     alignment and structure
>1i5n_A Chemotaxis protein CHEA; four-helix bundle, transferase; 2.14A {Salmonella typhimurium} SCOP: a.24.10.3 Back     alignment and structure
>2lch_A Protein OR38; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Thermotoga maritima} Back     alignment and structure
>3kyj_A CHEA3, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_A Back     alignment and structure
>2lp4_A Chemotaxis protein CHEA; two component signaling system, histidine phosphotransfer DO response regulator; NMR {Escherichia coli} Back     alignment and structure
>3uo3_A J-type CO-chaperone JAC1, mitochondrial; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, J-protein; 1.85A {Saccharomyces cerevisiae} PDB: 3uo2_A Back     alignment and structure
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus} Back     alignment and structure
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens} Back     alignment and structure
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A Back     alignment and structure
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 154
d1yvia1142 a.24.10.2 (A:2-143) Histidine-containing phosphotr 4e-42
d1sr2a_116 a.24.10.4 (A:) Sensor-like histidine kinase YojN, 3e-19
d2a0ba_118 a.24.10.1 (A:) Aerobic respiration control sensor 2e-18
d2r25a1166 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Bak 3e-14
d1y6da_114 a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio h 2e-12
d2ooca1104 a.24.10.6 (A:8-111) Histidine phosphotransferase S 2e-04
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Length = 142 Back     information, alignment and structure

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

 Score =  135 bits (340), Expect = 4e-42
 Identities = 60/141 (42%), Positives = 101/141 (71%), Gaps = 1/141 (0%)

Query: 3   VGQMQRRLLEYTKSLFMEGVLDNQFLQLQQLQDE-SNPDFVAEVVSLFFADSERLLNDLT 61
              ++ +L     S+F +G++D QF QLQ LQDE   P FV+EVV+LF  D++R++N++ 
Sbjct: 2   AAALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIA 61

Query: 62  RALDQPTIDFKMVDSHVHQLKGSSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQ 121
             L+QP ++F  VD++VHQLKGSS+S+GA+++K  C+ FR FC++++ +GC+  L  V+ 
Sbjct: 62  TLLEQPVVNFDKVDAYVHQLKGSSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRN 121

Query: 122 EYCLVKNKLETLFRMEQQIVA 142
           ++  ++NK +T+ ++EQQI A
Sbjct: 122 DFYDLRNKFQTMLQLEQQIQA 142
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Length = 116 Back     information, alignment and structure
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Length = 118 Back     information, alignment and structure
>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166 Back     information, alignment and structure
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Length = 114 Back     information, alignment and structure
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Length = 104 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query154
d1yvia1142 Histidine-containing phosphotransfer protein HP1 { 99.96
d2a0ba_118 Aerobic respiration control sensor protein, ArcB { 99.87
d1y6da_114 Phosphorelay protein luxU {Vibrio harveyi [TaxId: 99.81
d2r25a1166 Phosphorelay protein ypd1 {Baker's yeast (Saccharo 99.81
d1sr2a_116 Sensor-like histidine kinase YojN, C-terminal doma 99.75
d2ooca1104 Histidine phosphotransferase ShpA {Caulobacter cre 99.65
d1tqga_105 Chemotaxis protein CheA P1 domain {Thermotoga mari 99.01
d1i5na_128 Chemotaxis protein CheA P1 domain {Salmonella typh 98.93
d1fpoa295 HSC20 (HSCB), C-terminal oligomerisation domain {E 93.21
d1nzea_112 Oxygen-evolving enhancer protein 3, {Spinach (Spin 91.89
>d1yvia1 a.24.10.2 (A:2-143) Histidine-containing phosphotransfer protein HP1 {Rice (Oryza sativa) [TaxId: 4530]} Back     information, alignment and structure
class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Histidine-containing phosphotransfer domain, HPT domain
family: Phosphorelay protein-like
domain: Histidine-containing phosphotransfer protein HP1
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.96  E-value=3.7e-28  Score=174.89  Aligned_cols=137  Identities=42%  Similarity=0.832  Sum_probs=128.5

Q ss_pred             HHHHHHHHHHHhhhhhhchHHHHHHHHhhhc-cCCHHHHHHHHHHHHHhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhh
Q 031731            5 QMQRRLLEYTKSLFMEGVLDNQFLQLQQLQD-ESNPDFVAEVVSLFFADSERLLNDLTRALDQPTIDFKMVDSHVHQLKG   83 (154)
Q Consensus         5 ~~~~~~~~~~~~~~~~~ild~~~~~L~~L~~-~~~~~~~~~ll~~Fl~~~~~~l~~L~~a~~~~~~D~~~l~~~aH~LKG   83 (154)
                      .|..++.....+++++|++|.+|.++..|.+ +|+++|+.+++..|++++++.+..|..++..++.||..++..+|+|||
T Consensus         4 ~l~~~~~~~~~~~~~~g~lD~~f~~l~~l~~~~~~~~fl~eli~~Fl~~~~~~l~~l~~al~~~~~D~~~~~~~aH~LKG   83 (142)
T d1yvia1           4 ALRDQLTALLSSMFSQGLVDEQFQQLQMLQDEGGTPGFVSEVVTLFCDDADRIINEIATLLEQPVVNFDKVDAYVHQLKG   83 (142)
T ss_dssp             HHHHHHHHHHHHHHHTTSCCHHHHHHHHHHC---CTTHHHHHHHHHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhHHhcccccHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence            5789999999999999999999999999987 688999999999999999999999999997433399999999999999


Q ss_pred             hhhhhcHHHHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 031731           84 SSSSIGAERIKNACVAFRNFCEEQNIEGCMSCLQQVKQEYCLVKNKLETLFRMEQQIV  141 (154)
Q Consensus        84 ss~~lGa~~L~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~l~~~~~~~  141 (154)
                      +|+++|+.+++.+|..||.++++++.+.+..++..|+.+|..++..|++|+..++|+.
T Consensus        84 ss~~lGa~~l~~~~~~lE~~~~~~~~~~~~~~~~~L~~e~~~l~~~L~~~l~~~~qi~  141 (142)
T d1yvia1          84 SSASVGAQKVKFTCMQFRQFCQDKSRDGCLMALAVVRNDFYDLRNKFQTMLQLEQQIQ  141 (142)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHh
Confidence            9999999999999999999999999999999999999999999999999999999985
>d2a0ba_ a.24.10.1 (A:) Aerobic respiration control sensor protein, ArcB {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]} Back     information, alignment and structure
>d2r25a1 a.24.10.2 (A:2-167) Phosphorelay protein ypd1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ooca1 a.24.10.6 (A:8-111) Histidine phosphotransferase ShpA {Caulobacter crescentus [TaxId: 155892]} Back     information, alignment and structure
>d1tqga_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1i5na_ a.24.10.3 (A:) Chemotaxis protein CheA P1 domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1fpoa2 a.23.1.1 (A:77-171) HSC20 (HSCB), C-terminal oligomerisation domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure