Citrus Sinensis ID: 031760

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150---
Protein Sequence
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Secondary Structure (PSIPRED)
ccHHHHHHHHHHccccHHHHHHHHHHHHHHHccccEEEcccccccHHHHHccccccccEEEEEEEEEEcccccccccccccccccccccEEccccccHHHHHHHHHccccccEEEEEEEEEcccccEEEEEEEEEEcccEEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHccccHHHHHHHHHHHHHHcccccEEEccccccHHHHHHHcccccccEEEEEEEEEcccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
MGAYTFVSELWRKKQSDVMRFLQRVRcweyrqhpsivrvtrptrpdkarrlgykakqgYVVYRVRVrrggrkrpvpkgivygkptnqgvtqlkfqrsKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Flexible Loop (DISEMBL)
mgaytfvselwrkkqsdVMRFLQRVrcweyrqhpsivrvtrptrpdkarrlgykakqgyvvyrvrvrrggrkrpvpkgivygkptnqgvtqlkfqrskrsvaeeragrklgglrvlnSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Low Complexity Region (SEG)
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQgyvvyrvrvrrggrkrpvpkgIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Disordered region (IsUnstruct)
***YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPT***KARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGK************************RKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETG***
Disordered Region (DISOPRED)
*GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGG*********************LKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLH*
Disordered Region (DISEMBL)
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQ***************GRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Disordered Region (DISPRO)
*GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKR******VYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCFRLVSLVLFVMTLFETGLHL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	153	2.2.26 [Sep-21-2011]
O82528	204	60S ribosomal protein L15	N/A	no	0.823	0.617	0.944	5e-64
O23515	204	60S ribosomal protein L15	yes	no	0.823	0.617	0.912	3e-53
Q8VYF1	204	60S ribosomal protein L15	yes	no	0.823	0.617	0.912	3e-53
Q7T3N1	204	60S ribosomal protein L15	N/A	no	0.823	0.617	0.753	3e-51
Q7T3N8	204	60S ribosomal protein L15	N/A	no	0.823	0.617	0.753	3e-51
Q7T3P0	204	60S ribosomal protein L15	N/A	no	0.823	0.617	0.746	1e-50
P61314	204	60S ribosomal protein L15	yes	no	0.823	0.617	0.746	1e-50
Q5NVE0	204	60S ribosomal protein L15	yes	no	0.823	0.617	0.746	1e-50
Q9CZM2	204	60S ribosomal protein L15	yes	no	0.823	0.617	0.746	1e-50
Q4R5B2	204	60S ribosomal protein L15	N/A	no	0.823	0.617	0.746	1e-50

>sp|O82528|RL15_PETHY 60S ribosomal protein L15 OS=Petunia hybrida GN=RPL15 PE=2 SV=1

 Score =  242 bits (618), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 119/126 (94%), Positives = 123/126 (97%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           INE  +
Sbjct: 121 INEDST 126

Petunia hybrida (taxid: 4102)

>sp|O23515|RL151_ARATH 60S ribosomal protein L15-1 OS=Arabidopsis thaliana GN=RPL15A PE=2 SV=1

 Score =  207 bits (526), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/126 (91%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 LNEDST 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VYF1|RL152_ARATH 60S ribosomal protein L15-2 OS=Arabidopsis thaliana GN=RPL15B PE=2 SV=1

 Score =  207 bits (526), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 115/126 (91%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 LNEDST 126

Arabidopsis thaliana (taxid: 3702)

>sp|Q7T3N1|RL15_MYLPI 60S ribosomal protein L15 OS=Mylopharyngodon piceus GN=rpl15 PE=2 SV=3

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 106/126 (84%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Mylopharyngodon piceus (taxid: 75356)

>sp|Q7T3N8|RL15_CTEID 60S ribosomal protein L15 OS=Ctenopharyngodon idella GN=rpl15 PE=2 SV=3

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 106/126 (84%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Ctenopharyngodon idella (taxid: 7959)

>sp|Q7T3P0|RL15_HYPNO 60S ribosomal protein L15 OS=Hypophthalmichthys nobilis GN=rpl15 PE=2 SV=3

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 106/126 (84%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQS+VMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYMQELWRKKQSNVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Hypophthalmichthys nobilis (taxid: 7965)

>sp|P61314|RL15_RAT 60S ribosomal protein L15 OS=Rattus norvegicus GN=Rpl15 PE=1 SV=2

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Rattus norvegicus (taxid: 10116)

>sp|Q5NVE0|RL15_PONAB 60S ribosomal protein L15 OS=Pongo abelii GN=RPL15 PE=2 SV=3

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Pongo abelii (taxid: 9601)

>sp|Q9CZM2|RL15_MOUSE 60S ribosomal protein L15 OS=Mus musculus GN=Rpl15 PE=2 SV=4

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Mus musculus (taxid: 10090)

>sp|Q4R5B2|RL15_MACFA 60S ribosomal protein L15 OS=Macaca fascicularis GN=RPL15 PE=2 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 94/126 (74%), Positives = 105/126 (83%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKG  YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query: 121 INEVCS 126
           + E  +
Sbjct: 121 VGEDST 126

Macaca fascicularis (taxid: 9541)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
224074171	204	predicted protein [Populus trichocarpa]	0.823	0.617	0.944	5e-63
224063657	204	predicted protein [Populus trichocarpa]	0.823	0.617	0.936	7e-63
6094014	204	RecName: Full=60S ribosomal protein L15	0.823	0.617	0.944	3e-62
192913004	204	ribosomal protein L15 [Elaeis guineensis	0.823	0.617	0.904	8e-61
226528613	204	60S ribosomal protein L15 [Zea mays] gi|	0.823	0.617	0.880	2e-59
226496391	204	60S ribosomal protein L15 [Zea mays] gi|	0.823	0.617	0.873	4e-59
194707842	204	unknown [Zea mays] gi|414886708|tpg|DAA6	0.823	0.617	0.873	5e-59
326508668	204	predicted protein [Hordeum vulgare subsp	0.823	0.617	0.857	9e-59
357122805	204	PREDICTED: 60S ribosomal protein L15-lik	0.823	0.617	0.857	1e-58
357146016	204	PREDICTED: 60S ribosomal protein L15-lik	0.823	0.617	0.857	1e-58

>gi|224074171|ref|XP_002304285.1| predicted protein [Populus trichocarpa] gi|224138624|ref|XP_002326649.1| predicted protein [Populus trichocarpa] gi|118484142|gb|ABK93954.1| unknown [Populus trichocarpa] gi|222833971|gb|EEE72448.1| predicted protein [Populus trichocarpa] gi|222841717|gb|EEE79264.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (625), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 119/126 (94%), Positives = 122/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           INE  +
Sbjct: 121 INEDST 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224063657|ref|XP_002301250.1| predicted protein [Populus trichocarpa] gi|224137010|ref|XP_002327000.1| predicted protein [Populus trichocarpa] gi|222835315|gb|EEE73750.1| predicted protein [Populus trichocarpa] gi|222842976|gb|EEE80523.1| predicted protein [Populus trichocarpa]

 Score =  244 bits (624), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 118/126 (93%), Positives = 122/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVT PTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTHPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGL+VLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLKVLNSYW 120

Query: 121 INEVCS 126
           INE  +
Sbjct: 121 INEDST 126

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|6094014|sp|O82528.1|RL15_PETHY RecName: Full=60S ribosomal protein L15 gi|3608479|gb|AAD13389.1| ribosomal protein L15 [Petunia x hybrida]

 Score =  242 bits (618), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 119/126 (94%), Positives = 123/126 (97%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAYT+VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYTYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKPTNQGVTQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPTNQGVTQLKFQRTKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           INE  +
Sbjct: 121 INEDST 126

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192913004|gb|ACF06610.1| ribosomal protein L15 [Elaeis guineensis]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 114/126 (90%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVRVTRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQLPSIVRVTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YR+RVRRGGRKRPVPKGIVYGKP NQG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGIVYGKPKNQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226528613|ref|NP_001148602.1| 60S ribosomal protein L15 [Zea mays] gi|194698344|gb|ACF83256.1| unknown [Zea mays] gi|195620698|gb|ACG32179.1| 60S ribosomal protein L15 [Zea mays] gi|195637452|gb|ACG38194.1| 60S ribosomal protein L15 [Zea mays] gi|414883699|tpg|DAA59713.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  233 bits (594), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 111/126 (88%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ PSIVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPSIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226496391|ref|NP_001150386.1| 60S ribosomal protein L15 [Zea mays] gi|195638814|gb|ACG38875.1| 60S ribosomal protein L15 [Zea mays]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|194707842|gb|ACF88005.1| unknown [Zea mays] gi|414886708|tpg|DAA62722.1| TPA: ribosomal protein L15 [Zea mays]

 Score =  232 bits (591), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 110/126 (87%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQGYV
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYRVRV+RGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVKRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326508668|dbj|BAJ95856.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  231 bits (588), Expect = 9e-59,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY FVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPD+ARRLG+KAKQGYV
Sbjct: 1   MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122805|ref|XP_003563105.1| PREDICTED: 60S ribosomal protein L15-like [Brachypodium distachyon]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY FVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPD+ARRLG+KAKQGYV
Sbjct: 1   MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357146016|ref|XP_003573847.1| PREDICTED: 60S ribosomal protein L15-like [Brachypodium distachyon]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 108/126 (85%), Positives = 121/126 (96%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY FVSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPD+ARRLG+KAKQGYV
Sbjct: 1   MGAYKFVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRITRPTRPDRARRLGFKAKQGYV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           VYR+RVRRGGRKRPVPKGIVYGKP +QG+TQLKFQR+KRSVAEERAGR+LGGLRVLNSYW
Sbjct: 61  VYRIRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRRLGGLRVLNSYW 120

Query: 121 INEVCS 126
           +NE  +
Sbjct: 121 VNEDST 126

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	153
TAIR|locus:2129081	204	AT4G16720 [Arabidopsis thalian	0.803	0.602	0.772	3e-46
TAIR|locus:2130923	204	AT4G17390 [Arabidopsis thalian	0.803	0.602	0.772	3e-46
ZFIN|ZDB-GENE-040801-183	204	rpl15 "ribosomal protein L15"	0.803	0.602	0.617	1.2e-35
UNIPROTKB|F1NQG5	206	RPL15 "Ribosomal protein L15"	0.803	0.597	0.609	4e-35
UNIPROTKB|E1BK63	204	E1BK63 "Ribosomal protein L15"	0.803	0.602	0.609	4e-35
UNIPROTKB|G5E686	204	G5E686 "Ribosomal protein L15"	0.803	0.602	0.609	4e-35
UNIPROTKB|Q5EAD6	204	RPL15 "60S ribosomal protein L	0.803	0.602	0.609	4e-35
UNIPROTKB|E2QXF3	204	RPL15 "60S ribosomal protein L	0.803	0.602	0.609	4e-35
UNIPROTKB|E7EQV9	174	RPL15 "Ribosomal protein L15"	0.803	0.706	0.609	4e-35
UNIPROTKB|E7EX53	133	RPL15 "Ribosomal protein L15"	0.803	0.924	0.609	4e-35

TAIR|locus:2129081 AT4G16720 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 95/123 (77%), Positives = 99/123 (80%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct:    61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query:   121 INE 123
             +NE
Sbjct:   121 LNE 123

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2130923 AT4G17390 [Arabidopsis thaliana (taxid:3702)]

 Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
 Identities = 95/123 (77%), Positives = 99/123 (80%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY +VSELWRKKQSDVMRFLQRVRCWEYRQ PSIVR+ RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYVSELWRKKQSDVMRFLQRVRCWEYRQQPSIVRLVRPTRPDKARRLGYKAKQGFV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               IVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRV+NSYW
Sbjct:    61 VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYW 120

Query:   121 INE 123
             +NE
Sbjct:   121 LNE 123

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

GO:0006342 "chromatin silencing" evidence=RCA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

GO:0009664 "plant-type cell wall organization" evidence=RCA

GO:0042545 "cell wall modification" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ZFIN|ZDB-GENE-040801-183 rpl15 "ribosomal protein L15" [Danio rerio (taxid:7955)]

 Score = 385 (140.6 bits), Expect = 1.2e-35, P = 1.2e-35
 Identities = 76/123 (61%), Positives = 84/123 (68%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  S+ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYMQELWRKKQSDVMRFLLRVRCWQYRQLSSLHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV Q+KF RS +SVAEERAGR  GGLRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQIKFARSLQSVAEERAGRHCGGLRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

UNIPROTKB|F1NQG5 RPL15 "Ribosomal protein L15" [Gallus gallus (taxid:9031)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     3 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 62

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    63 IYRVRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 122

Query:   121 INE 123
             + E
Sbjct:   123 VGE 125

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

UNIPROTKB|E1BK63 E1BK63 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKHPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|G5E686 G5E686 "Ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|Q5EAD6 RPL15 "60S ribosomal protein L15" [Bos taurus (taxid:9913)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2QXF3 RPL15 "60S ribosomal protein L15" [Canis lupus familiaris (taxid:9615)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E7EQV9 RPL15 "Ribosomal protein L15" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

UNIPROTKB|E7EX53 RPL15 "Ribosomal protein L15" [Homo sapiens (taxid:9606)]

 Score = 380 (138.8 bits), Expect = 4.0e-35, P = 4.0e-35
 Identities = 75/123 (60%), Positives = 83/123 (67%)

Query:     1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
             MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct:     1 MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60

Query:    61 XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct:    61 IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120

Query:   121 INE 123
             + E
Sbjct:   121 VGE 123

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P91374	RL15_CAEEL	No assigned EC number	0.6587	0.8235	0.6176	yes	no
P54780	RL15B_YEAST	No assigned EC number	0.7301	0.8235	0.6176	yes	no
Q7T3M9	RL15_SINKN	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
O74895	RL15A_SCHPO	No assigned EC number	0.6904	0.8235	0.6268	yes	no
Q4R5B2	RL15_MACFA	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
Q7T2N5	RL15_TACFU	No assigned EC number	0.7560	0.8039	0.6029	N/A	no
Q7T3P1	RL15_ANGJA	No assigned EC number	0.7301	0.8235	0.6176	N/A	no
O65050	RL15A_PICMA	No assigned EC number	0.8730	0.8235	0.6176	N/A	no
P61368	RL15_HYDVU	No assigned EC number	0.7380	0.8235	0.6176	N/A	no
P61369	RL15_SILAS	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
Q9US22	RL15B_SCHPO	No assigned EC number	0.6904	0.8235	0.6268	yes	no
P61367	RL15_EPICO	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
E2QXF3	RL15_CANFA	No assigned EC number	0.7460	0.8235	0.6176	yes	no
O13418	RL15_ASPNG	No assigned EC number	0.7154	0.8039	0.6059	yes	no
O65082	RL15B_PICMA	No assigned EC number	0.8730	0.8235	0.6176	N/A	no
P61313	RL15_HUMAN	No assigned EC number	0.7460	0.8235	0.6176	yes	no
O82528	RL15_PETHY	No assigned EC number	0.9444	0.8235	0.6176	N/A	no
Q90YV2	RL15_ICTPU	No assigned EC number	0.7619	0.8235	0.6176	N/A	no
Q9CZM2	RL15_MOUSE	No assigned EC number	0.7460	0.8235	0.6176	yes	no
Q7T3N9	RL15_CARAU	No assigned EC number	0.7380	0.8235	0.6176	N/A	no
Q7T3N8	RL15_CTEID	No assigned EC number	0.7539	0.8235	0.6176	N/A	no
Q7T3N3	RL15_PARDA	No assigned EC number	0.7301	0.8235	0.6176	N/A	no
Q7T3N2	RL15_MONAL	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
Q7T3N1	RL15_MYLPI	No assigned EC number	0.7539	0.8235	0.6176	N/A	no
Q7T3N7	RL15_CYPCA	No assigned EC number	0.7380	0.8235	0.6176	N/A	no
Q7T3N6	RL15_HYPMO	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
P61314	RL15_RAT	No assigned EC number	0.7460	0.8235	0.6176	yes	no
O23515	RL151_ARATH	No assigned EC number	0.9126	0.8235	0.6176	yes	no
P05748	RL15A_YEAST	No assigned EC number	0.7301	0.8235	0.6176	yes	no
Q7T3N4	RL15_MEGAM	No assigned EC number	0.7380	0.8235	0.6176	N/A	no
Q8VYF1	RL152_ARATH	No assigned EC number	0.9126	0.8235	0.6176	yes	no
Q5EAD6	RL15_BOVIN	No assigned EC number	0.7460	0.8235	0.6176	yes	no
P52818	RL15_ANOGA	No assigned EC number	0.6746	0.8235	0.6176	yes	no
Q7T2N4	RL15_SILME	No assigned EC number	0.7460	0.8235	0.6176	N/A	no
O17445	RL15_DROME	No assigned EC number	0.6904	0.8235	0.6176	yes	no
Q8X034	RL15_NEUCR	No assigned EC number	0.7142	0.8235	0.6206	N/A	no
Q5NVE0	RL15_PONAB	No assigned EC number	0.7460	0.8235	0.6176	yes	no
Q7T3P0	RL15_HYPNO	No assigned EC number	0.7460	0.8235	0.6176	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	153
pfam00827	192	pfam00827, Ribosomal_L15e, Ribosomal L15	3e-75
PTZ00026	204	PTZ00026, PTZ00026, 60S ribosomal protein L15; Pro	1e-69
COG1632	195	COG1632, RPL15A, Ribosomal protein L15E [Translati	1e-47
PRK04243	196	PRK04243, PRK04243, 50S ribosomal protein L15e; Va	4e-39

>gnl|CDD|144426 pfam00827, Ribosomal_L15e, Ribosomal L15

 Score =  222 bits (567), Expect = 3e-75
 Identities = 92/122 (75%), Positives = 103/122 (84%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
           GAY ++ ELW+KKQSDVMRFL RVRCWEYRQ P+IVRV RPTRPDKARRLGYKAKQGYV+
Sbjct: 1   GAYKYIRELWKKKQSDVMRFLLRVRCWEYRQLPAIVRVERPTRPDKARRLGYKAKQGYVI 60

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
           YRVRVRRGGRKRP PKG  YGKP   GV +LK  +S +S+AEERAGRK   LRVLNSYW+
Sbjct: 61  YRVRVRRGGRKRPRPKGGRYGKPKRMGVNKLKPAKSLQSIAEERAGRKCPNLRVLNSYWV 120

Query: 122 NE 123
            +
Sbjct: 121 GQ 122

Length = 192

>gnl|CDD|185402 PTZ00026, PTZ00026, 60S ribosomal protein L15; Provisional

 Score =  208 bits (531), Expect = 1e-69
 Identities = 92/123 (74%), Positives = 106/123 (86%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY +++ELW+KKQSDVMRFL RVR WEYRQ P I RV+RPTRPDKARRLGYKAKQG+V
Sbjct: 1   MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFV 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           +YRVRVRRGGRKRPV KGIVYGKP  QGV +LK  R+ R+VAEER G++ G LRVLNSYW
Sbjct: 61  IYRVRVRRGGRKRPVRKGIVYGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYW 120

Query: 121 INE 123
           + +
Sbjct: 121 VGQ 123

Length = 204

>gnl|CDD|224547 COG1632, RPL15A, Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

 Score =  152 bits (385), Expect = 1e-47
 Identities = 69/123 (56%), Positives = 86/123 (69%), Gaps = 2/123 (1%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
             AY ++ E W+K +  V+R L R R  E+R+ PSIVR+ RPTR D+AR LGYKAKQGYV
Sbjct: 2   RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYV 61

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           V RVRVRRGGR R  PK     +PT  GV ++K ++S + +AEERAGRK   L VLNSYW
Sbjct: 62  VVRVRVRRGGRNRKRPKK--GRRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYW 119

Query: 121 INE 123
           + E
Sbjct: 120 VGE 122

Length = 195

>gnl|CDD|235263 PRK04243, PRK04243, 50S ribosomal protein L15e; Validated

 Score =  130 bits (330), Expect = 4e-39
 Identities = 60/124 (48%), Positives = 82/124 (66%), Gaps = 4/124 (3%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           M  Y+++ E W++ +   +  L   R  E+R+ P++VR+ RPTR D+AR LGYKAKQG V
Sbjct: 3   MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIV 62

Query: 61  VYRVRVRRGGRKRPVPKGIVYG-KPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSY 119
           V RVRVRRGG ++P PKG   G +P   GV ++   +S + +AEERA RK   L VLNSY
Sbjct: 63  VVRVRVRRGGLRKPRPKG---GRRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSY 119

Query: 120 WINE 123
           W+ E
Sbjct: 120 WVGE 123

Length = 196

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	153
PTZ00026	204	60S ribosomal protein L15; Provisional	100.0
KOG1678	204	consensus 60s ribosomal protein L15 [Translation,	100.0
PRK04243	196	50S ribosomal protein L15e; Validated	100.0
PF00827	192	Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439	100.0
COG1632	195	RPL15A Ribosomal protein L15E [Translation, riboso	100.0

>PTZ00026 60S ribosomal protein L15; Provisional

Probab=100.00  E-value=2.4e-79  Score=502.22  Aligned_cols=134  Identities=69%  Similarity=1.167  Sum_probs=132.9

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+|
T Consensus         1 Mg~Y~yi~e~wkkkqsd~~r~l~r~R~we~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~~   80 (204)
T PTZ00026          1 MGAYKYLNELWKKKQSDVMRFLLRVRTWEYRQLPVIHRVSRPTRPDKARRLGYKAKQGFVIYRVRVRRGGRKRPVRKGIV   80 (204)
T ss_pred             CcHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEEcCCCCChhHHHHcCCcccceEEEEEEEEeeCCCCCCccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                      ||||+|||||++|+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 ~gkpk~~Gv~~lk~~kslq~iAEeRv~rk~~nLrVLNSYWV~qDg~yK~yEVIL  134 (204)
T PTZ00026         81 YGKPKTQGVNKLKSTRNLRAVAEERVGKRCGNLRVLNSYWVGQDSTYKFYEVIL  134 (204)
T ss_pred             CCCccccCccccCcchhHHHHHHHHhhccCCCcEEecceeEcCCCCcccEEEEE
Confidence            999999999999999999999999999999999999999999999999999875

>KOG1678 consensus 60s ribosomal protein L15 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.7e-80  Score=499.43  Aligned_cols=134  Identities=74%  Similarity=1.248  Sum_probs=132.8

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+++|||+++||||||||+||||||||||||||||++||+|+|+|||+|
T Consensus         1 MgAykY~~El~rkKQSDvmrfLlRvr~weYrQ~~~~hr~~rPtrpdkARrLGYkAKQG~viYrirVrrG~rKrpvpkG~t   80 (204)
T KOG1678|consen    1 MGAYKYLQELWRKKQSDVMRFLLRVRCWEYRQLSAIHRAPRPTRPDKARRLGYKAKQGYVIYRIRVRRGGRKRPVPKGAT   80 (204)
T ss_pred             CcHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhhhhhcCCCCCCchHHHhccccccceeEEEEEEEecCCccCCCCCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                      ||||+|+||||||+++|+|++||||||++|+||+|||||||+||+||||||.||
T Consensus        81 yGKp~~~GvnqlK~~rs~qs~AEer~Gr~~g~LrVlNSYWv~qDstYk~fEVIl  134 (204)
T KOG1678|consen   81 YGKPVNQGVNQLKFQRSLQSVAEERAGRRCGNLRVLNSYWVNQDSTYKYFEVIL  134 (204)
T ss_pred             cCCccccchhhhhhhHHHHHHHHHHhhccccceeeeehhhccCccceeeEEEEE
Confidence            999999999999999999999999999999999999999999999999999764

>PRK04243 50S ribosomal protein L15e; Validated

Probab=100.00  E-value=2.7e-78  Score=493.72  Aligned_cols=132  Identities=45%  Similarity=0.761  Sum_probs=130.7

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+ 
T Consensus         3 m~~Y~yi~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Rv~rPTR~DrAR~LGYKAKQG~vv~RvrVRrGgrkr~~~kg~-   81 (196)
T PRK04243          3 MSMYSYIREAWKRPKESYVGELMWQRLQEWRREPAVVRIERPTRLDRARALGYKAKQGIVVVRVRVRRGGLRKPRPKGG-   81 (196)
T ss_pred             ccHHHHHHHHHhccchHHHHHHHHHHHHHHhccCceEEcCCCCChhHHHHcCccccceEEEEEEEeccCCCCCCCcCCC-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                       |||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        82 -~kPk~~Gv~~lk~~kslq~iAEERa~rk~~nlrVLNSYwV~qDg~yK~fEVIl  134 (196)
T PRK04243         82 -RRPKRMGVNKITPAKSIQRIAEERAARKYPNLEVLNSYWVGEDGKYKWYEVIL  134 (196)
T ss_pred             -CCccccCccccchhhhHHHHHHHHhhccCCCcEeeeeeEeccCCCcccEEEEE
Confidence             99999999999999999999999999999999999999999999999999874

>PF00827 Ribosomal_L15e: Ribosomal L15; InterPro: IPR000439 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=5.3e-78  Score=490.94  Aligned_cols=133  Identities=68%  Similarity=1.124  Sum_probs=121.7

Q ss_pred             chhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCccc
Q 031760            2 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (153)
Q Consensus         2 gaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~~   81 (153)
                      |||+||+|+|++||||+|+||+|+|||||||+|+|+|+++||||||||+||||||||||||||||||||+|+|+|+|++|
T Consensus         1 g~Ykyi~e~wk~k~~d~~~~l~r~R~~e~R~~~av~Ri~rPtR~dkAR~LGYKAKQG~vv~RvrVrrGgrkr~~~kg~~~   80 (192)
T PF00827_consen    1 GAYKYIRELWKKKQSDVMRFLLRIRLWEWRQLPAVHRIERPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPRPKGGRY   80 (192)
T ss_dssp             -SHHHHHHHHHTTTSHHHHHHHHHHHHHHHHS-SEEEESS-SSHHHHHHTT-SSSTTEEEEEEEEESSS---SSSSSSST
T ss_pred             CHHHHHHHHHhcccchHHHHHHHHHHHHHhcCCceEECCCCCCccHHHHcCCccCCeEEEEEEEEecCCCCCcccCCccc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        82 gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                      |||+|||||++|+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 gKPk~~Gv~~~k~~kslq~iAEeRagrk~~nLrVLnSYwV~eDg~yK~fEVIl  133 (192)
T PF00827_consen   81 GKPKHQGVNQLKPAKSLQSIAEERAGRKYPNLRVLNSYWVGEDGTYKWFEVIL  133 (192)
T ss_dssp             SSCGGSSSTSS--SS-HHHHHHHHHHHHSTTSEEEEEEEEEEESSEEEEEEEE
T ss_pred             cccccceeeccCccccHHHHhhhhhccccCCceEEeeEEeCCCCcceeEEEEE
Confidence            99999999999999999999999999999999999999999999999999764

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaebacterial ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of: Mammalian L15. Insect L15. Plant L15. Yeast YL10 (L13) (Rp15r). Archaebacterial L15e. These proteins have about 200 amino acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3IZR_P 4A1E_L 4A17_L 4A1A_L 4A1C_L 2ZKR_m 3IZS_P 1S1I_L 3O58_O 3O5H_O ....

>COG1632 RPL15A Ribosomal protein L15E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.6e-61  Score=390.88  Aligned_cols=132  Identities=52%  Similarity=0.829  Sum_probs=129.6

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||.|+|++++++++.+|+++|+|+||++|+|+|+++|||+|+||.||||||||||||||||++||+.+++|+++ 
T Consensus         2 ~~~y~yv~e~wkk~~~~~~~~l~~~r~~~wR~~~~i~R~erPTrldrAR~LGykaKqG~vvvrvrVrrG~~~~~r~~~g-   80 (195)
T COG1632           2 RSAYKYIREAWKKPKESVVRELLRQRLIEWRKEPSIVRIERPTRLDRARALGYKAKQGYVVVRVRVRRGGRNRKRPKKG-   80 (195)
T ss_pred             ccHHHHHHHHHhCchHHHHhHHHhHHHHhhccCCceEEecCCCHHHHHHhcCCcccCceEEEEEeeecccccCcCccCC-
Confidence            6899999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                       ++|++||+|++++++|+|.|||||||||||||+|||||||+|||.|||||-|+
T Consensus        81 -rrp~~mgvnki~~~ks~~~iAEerA~RK~pNL~vLnSYwVgeDg~yK~fEvIl  133 (195)
T COG1632          81 -RRPTRMGVNKIKRKKSLQFIAEERAGRKYPNLEVLNSYWVGEDGYYKYFEVIL  133 (195)
T ss_pred             -CCcCcccccccChhhhHHHHHHHHhhccCCCcEeeeeEEeccccceeeEEEEE
Confidence             89999999999999999999999999999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	153
3izr_P	204	Localization Of The Large Subunit Ribosomal Protein		3e-48
2zkr_m	204	Structure Of A Mammalian Ribosomal 60s Subunit With		4e-37
3izs_P	204	Localization Of The Large Subunit Ribosomal Protein		2e-36
3jyw_L	192	Structure Of The 60s Proteins For Eukaryotic Riboso		1e-35
1s1i_L	203	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		1e-35
3zf7_Q	221	High-resolution Cryo-electron Microscopy Structure		8e-31
4a17_L	204	T.Thermophila 60s Ribosomal Subunit In Complex With		1e-30
3j21_M	194	Promiscuous Behavior Of Proteins In Archaeal Riboso		7e-13
1jj2_L	194	Fully Refined Crystal Structure Of The Haloarcula M		1e-11
3cc2_M	196	The Refined Crystal Structure Of The Haloarcula Mar		1e-10
3g4s_M	194	Co-Crystal Structure Of Tiamulin Bound To The Large		1e-10
1vq9_M	195	The Structure Of Cca-Phe-Cap-Bio And The Antibiotic		2e-10
2qa4_M	196	A More Complete Structure Of The The L7L12 STALK OF		2e-10
1yi2_M	195	Crystal Structure Of Erythromycin Bound To The G209		2e-10
1s72_M	194	Refined Crystal Structure Of The Haloarcula Marismo		2e-10
1yhq_M	194	Crystal Structure Of Azithromycin Bound To The G209		2e-10
1ffk_I	194	Crystal Structure Of The Large Ribosomal Subunit Fr		6e-10

>pdb|3IZR|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  186 bits (473), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 99/123 (80%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY +VSELWR+KQSDVMRF+QRVRCWEYRQ P+IVR+TRPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYVSELWRRKQSDVMRFVQRVRCWEYRQQPAIVRLTRPTRPDKARRLGYKAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                             IVYGKP +QG+TQLKFQR+KRSVAEERAGRKLGGLRVLNSYW
Sbjct: 61  VYRVRVRRGGRKRPVPKGIVYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLNSYW 120
Query: 121 INE 123
           +NE
Sbjct: 121 VNE 123

>pdb|2ZKR|MM Chain m, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 204

Iteration: 1
 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 75/123 (60%), Positives = 83/123 (67%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY ++ ELWRKKQSDVMRFL RVRCW+YRQ  ++ R  RPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYIQELWRKKQSDVMRFLLRVRCWQYRQLSALHRAPRPTRPDKARRLGYKAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               YGKP + GV QLKF RS +SVAEERAGR  G LRVLNSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGATYGKPVHHGVNQLKFARSLQSVAEERAGRHCGALRVLNSYW 120
Query: 121 INE 123
           + E
Sbjct: 121 VGE 123

>pdb|3IZS|P Chain P, Localization Of The Large Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 204

Iteration: 1
 Score =  147 bits (371), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 84/126 (66%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ   
Sbjct: 1   MGAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                               YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW
Sbjct: 61  IYRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYW 120
Query: 121 INEVCS 126
           +N+  +
Sbjct: 121 VNQDST 126

>pdb|3JYW|L Chain L, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 192

Iteration: 1
 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 83/125 (66%)
Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXX 61
           GAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ    
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60
Query: 62  XXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
                              YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120
Query: 122 NEVCS 126
           N+  +
Sbjct: 121 NQDST 125

>pdb|1S1I|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h Length = 203

Iteration: 1
 Score =  145 bits (365), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 73/125 (58%), Positives = 83/125 (66%)
Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXX 61
           GAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQ    
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60
Query: 62  XXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
                              YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120
Query: 122 NEVCS 126
           N+  +
Sbjct: 121 NQDST 125

>pdb|3ZF7|Q Chain Q, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 221

Iteration: 1
 Score =  129 bits (323), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 61/128 (47%), Positives = 80/128 (62%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MG++ +++ELW+KK SDVMRF+QRVR WE+R   +IVR+ RPTRP+KAR +GYK KQ   
Sbjct: 18  MGSFMYLNELWKKKSSDVMRFIQRVRAWEFRHQHTIVRLRRPTRPEKARMVGYKTKQGYV 77
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                             I YGKP   GV   K  ++ R VAE+R G+K G LRVLNSYW
Sbjct: 78  VFRVRVRRGGRKRPVHKGITYGKPNTAGVLGRKLNKNNRVVAEQRLGKKYGNLRVLNSYW 137
Query: 121 INEVCSLI 128
           +N   + +
Sbjct: 138 VNADSTFL 145

>pdb|4A17|L Chain L, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 204

Iteration: 1
 Score =  128 bits (322), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 63/123 (51%), Positives = 81/123 (65%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MGAY ++ ELWRKKQSD+M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K    
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                             IVYGKP++ G+ QLKF R+ RS AEER G+++  LRVLNSYW
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120
Query: 121 INE 123
           + +
Sbjct: 121 VGQ 123

>pdb|3J21|M Chain M, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 194

Iteration: 1
 Score = 69.7 bits (169), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/123 (34%), Positives = 63/123 (51%), Gaps = 2/123 (1%)
Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXX 60
           MG Y ++ E W+  +   +  L + R  ++R+ P +VR+ RPTR D+AR LGY+AKQ   
Sbjct: 1   MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYV 60
Query: 61  XXXXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
                                 KP+  G  +   ++S + +AEE+A RK   L VLNSYW
Sbjct: 61  IVRVRVRKGGRKRPRWKGGR--KPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYW 118
Query: 121 INE 123
           + E
Sbjct: 119 VGE 121

>pdb|1JJ2|L Chain L, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ E W++ +   +  L   R  E+R  P++VR+ RPTR D+AR LGYKAKQ     
Sbjct: 4   AYSYIREAWKRPKEGQIAELMWHRMQEWRNEPAVVRIERPTRLDRARSLGYKAKQGIIVV 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K     V ++  +++ + +AEERA RK   LRVLNSY + 
Sbjct: 64  RVAIRKGSSRRTRFNKGRRSK--RMMVNRITRKKNIQRIAEERANRKFPNLRVLNSYSVG 121
Query: 123 E 123
           E
Sbjct: 122 E 122

>pdb|3CC2|M Chain M, The Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution With Rrna Sequence For The 23s Rrna And Genome-Derived Sequences For R-Proteins Length = 196

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 E 123
           +
Sbjct: 123 Q 123

>pdb|3G4S|M Chain M, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 194

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 59/121 (48%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W+      +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWKNPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 123 E 123
           +
Sbjct: 122 Q 122

>pdb|1VQ9|M Chain M, The Structure Of Cca-Phe-Cap-Bio And The Antibiotic Sparsomycin Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 E 123
           +
Sbjct: 123 Q 123

>pdb|2QA4|M Chain M, A More Complete Structure Of The The L7L12 STALK OF THE Haloarcula Marismortui 50s Large Ribosomal Subunit Length = 196

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 E 123
           +
Sbjct: 123 Q 123

>pdb|1YI2|M Chain M, Crystal Structure Of Erythromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 195

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 5   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 64
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 65  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 122
Query: 123 E 123
           +
Sbjct: 123 Q 123

>pdb|1S72|M Chain M, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 123 E 123
           +
Sbjct: 122 Q 122

>pdb|1YHQ|M Chain M, Crystal Structure Of Azithromycin Bound To The G2099a Mutant 50s Ribosomal Subunit Of Haloarcula Marismortui Length = 194

Iteration: 1
 Score = 61.2 bits (147), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/121 (34%), Positives = 58/121 (47%), Gaps = 2/121 (1%)
Query: 3   AYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXX 62
           AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQ     
Sbjct: 4   AYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVA 63
Query: 63  XXXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWIN 122
                               K   QGVT++  ++  + VAEERA R    LRVLNSY + 
Sbjct: 64  RVSVRKGSARKRRHKAGRRSK--RQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVG 121
Query: 123 E 123
           +
Sbjct: 122 Q 122

>pdb|1FFK|I Chain I, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 59.7 bits (143), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 59/127 (46%), Gaps = 16/127 (12%)
Query: 4   YTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQXXXXXX 63
           Y ++ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+      
Sbjct: 5   YAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVR 64
Query: 64  XXXXXXXXXXXXXXXIVYGKPTNQGVTQLKFQRSKRS-------VAEERAGRKLGGLRVL 116
                                 N+G    K   ++R        +AEERA RK   + VL
Sbjct: 65  VRIRRGGRRATR---------PNKGRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVL 115
Query: 117 NSYWINE 123
           NSYW+ E
Sbjct: 116 NSYWVGE 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	153
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	2e-58
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	2e-58
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	8e-58
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	6e-56
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	1e-55

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 1s1i_L Length = 192

 Score =  179 bits (455), Expect = 2e-58
 Identities = 91/122 (74%), Positives = 102/122 (83%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
           GAY ++ EL RKKQSDV+RFLQRVR WEYRQ   I R  RPTRPDKARRLGYKAKQG+V+
Sbjct: 1   GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVI 60

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
           YRVRVRRG RKRPVPKG  YGKPTNQGV +LK+QRS R+ AEER GR+   LRVLNSYW+
Sbjct: 61  YRVRVRRGNRKRPVPKGATYGKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWV 120

Query: 122 NE 123
           N+
Sbjct: 121 NQ 122

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L Length = 204

 Score =  179 bits (455), Expect = 2e-58
 Identities = 80/123 (65%), Positives = 100/123 (81%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
           MGAY ++ ELWRKKQSD+M F+ R+R WEYRQ P I + +R +RPDKAR+LGYK K GY 
Sbjct: 1   MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYA 60

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           ++RVRVRRGGRKRPV KGIVYGKP++ G+ QLKF R+ RS AEER G+++  LRVLNSYW
Sbjct: 61  IWRVRVRRGGRKRPVSKGIVYGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYW 120

Query: 121 INE 123
           + +
Sbjct: 121 VGQ 123

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ... Length = 194

 Score =  172 bits (438), Expect = 6e-56
 Identities = 49/123 (39%), Positives = 70/123 (56%), Gaps = 2/123 (1%)

Query: 1   MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYV 60
             AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +
Sbjct: 2   RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVI 61

Query: 61  VYRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYW 120
           V RV VR+G  ++   K     +   QGVT++  ++  + VAEERA R    LRVLNSY 
Sbjct: 62  VARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYS 119

Query: 121 INE 123
           + +
Sbjct: 120 VGQ 122

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2 Length = 194

 Score =  172 bits (436), Expect = 1e-55
 Identities = 49/122 (40%), Positives = 73/122 (59%), Gaps = 2/122 (1%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
             Y ++ E W++     +  L   R  ++R+ P++VR+ RPTR D+AR LGYKAK+G +V
Sbjct: 3   SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIV 62

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
            RVR+RRGGR+   P      K     V +   +++ + +AEERA RK   + VLNSYW+
Sbjct: 63  VRVRIRRGGRRATRPNK--GRKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWV 120

Query: 122 NE 123
            E
Sbjct: 121 GE 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	153
3iz5_P	204	60S ribosomal protein L15 (L15E); eukaryotic ribos	100.0
4a17_L	204	RPL15, ribosomal protein L15; eukaryotic ribosome,	100.0
3jyw_L	192	60S ribosomal protein L15(A); eukaryotic ribosome,	100.0
1vq8_M	194	50S ribosomal protein L15E; ribosome 50S, protein-	100.0
1ffk_I	194	Ribosomal protein L15E; ribosome assembly, RNA-RNA	100.0
3j21_M	194	50S ribosomal protein L15E; archaea, archaeal, KIN	100.0

>4a17_L RPL15, ribosomal protein L15; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_L 4a1c_L 4a1e_L

Probab=100.00  E-value=4.7e-81  Score=511.17  Aligned_cols=134  Identities=60%  Similarity=1.084  Sum_probs=131.8

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+|
T Consensus         1 mg~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~   80 (204)
T 4a17_L            1 MGAYKYLEELWRKKQSDLMSFILRLRTWEYRQLPVIHKASRSSRPDKARKLGYKNKDGYAIWRVRVRRGGRKRPVSKGIV   80 (204)
T ss_dssp             -CHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHSCSEEEESSCSCHHHHHHTTCCSSTTEEEEEEEEECSCCCCCCGGGCC
T ss_pred             CcHHHHHHHHHhccccHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeeCCCCCCccCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                      ||||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 ~~kPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL  134 (204)
T 4a17_L           81 YGKPSSVGINQLKFARNLRSCAEERVGKRVPELRVLNSYWVGQDGTYKFYEVIL  134 (204)
T ss_dssp             CSCTTTCCCTTCCCSSCHHHHHHHHHHHHSCSSEEEEEEEEECCSSEEEEEEEE
T ss_pred             ccCcccccccccCcchhHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEE
Confidence            999999999999999999999999999999999999999999999999999774

>3jyw_L 60S ribosomal protein L15(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 3izc_P 3izs_P 3o58_O 3o5h_O 3u5e_N 3u5i_N 4b6a_N 1s1i_L

Probab=100.00  E-value=1.2e-80  Score=505.06  Aligned_cols=133  Identities=68%  Similarity=1.136  Sum_probs=131.5

Q ss_pred             chhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCccc
Q 031760            2 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (153)
Q Consensus         2 gaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~~   81 (153)
                      |||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+||
T Consensus         1 g~Y~yi~e~wkk~~sd~~~~l~r~R~~e~Rq~~~i~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVRrGgrkrp~pkg~~~   80 (192)
T 3jyw_L            1 GAYKYLEELQRKKQSDVLRFLQRVRVWEYRQKNVIHRAARPTRPDKARRLGYKAKQGFVIYRVRVRRGNRKRPVPKGATY   80 (192)
T ss_dssp             CCCTTTHHHHHCTTSTTHHHHHHHHHHHHHHCCSEEEESSCSSHHHHHHHHCCCSTTCEEEEEECCCSSSBCCCCCSCSC
T ss_pred             CHHHHHHHHHhccchHHHHHHHHHHHHHHhcCCceEEcCCCCChHHHHhcCCccCCeeEEEEEEEeECCCCCCccCCCcc
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        82 gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                      |||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 gkPk~~Gvn~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL  133 (192)
T 3jyw_L           81 GKPTNQGVNELKYQRSLRATAEERVGRRAANLRVLNSYWVNQDSTYKYFEVIL  133 (192)
T ss_dssp             SSCSSCCSBCCCCSSCHHHHHHHHHHTTSSSSEEEEEEEEEECSSCEEEEEEE
T ss_pred             cCcccccccccCccccHHHHHHHHHhccCCCcEEeeeeeecCCCCcceEEEEE
Confidence            99999999999999999999999999999999999999999999999999774

>1vq8_M 50S ribosomal protein L15E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.2 PDB: 1vq4_M* 1vq5_M* 1vq6_M* 1vq7_M* 1s72_M* 1vqn_M* 2otj_M* 2otl_M* 2qex_M* 2qa4_M* 1vqo_M* 1vq9_M* 1vql_M* 1vqm_M* 1vqk_M* 1vqp_M* 1yij_M* 1yi2_M* 1yit_M* 1yj9_M* ...

Probab=100.00  E-value=5.7e-80  Score=501.68  Aligned_cols=132  Identities=37%  Similarity=0.552  Sum_probs=130.6

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+ 
T Consensus         2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~-   80 (194)
T 1vq8_M            2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG-   80 (194)
T ss_dssp             CCSHHHHHHHTTSTTSHHHHHHHHHHHHHHTTSCSEEEESSCSSHHHHHHHTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred             ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCChhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                       |||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 -~kPk~~Gv~~lk~~rslq~iAEERagrk~~nLrVLNSYWV~eD~~yK~yEVIL  133 (194)
T 1vq8_M           81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVIL  133 (194)
T ss_dssp             -CCGGGTCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEEETTEEEEEEEE
T ss_pred             -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEE
Confidence             99999999999999999999999999999999999999999999999999764

>1ffk_I Ribosomal protein L15E; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: d.12.1.2

Probab=100.00  E-value=8.6e-80  Score=500.62  Aligned_cols=132  Identities=37%  Similarity=0.628  Sum_probs=130.8

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+ 
T Consensus         2 mgaY~Yi~e~wkkkqsd~~r~llr~R~~e~Rq~~~i~R~~rPTR~DkAR~LGYKAKQG~vv~RvrVRrGgrkrp~pkg~-   80 (194)
T 1ffk_I            2 KSMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG-   80 (194)
T ss_pred             ccHHHHHHHHHhCcchHHHHHHHHHHHHHHhCCCceEEcCCCCchhHHHhcCCccCCeEEEEEEEeccCCCCCCCcCCC-
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                       |||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 -~kPk~~Gvn~lk~~rslq~iAEERagrk~~nLrVLNSYWV~qD~~yK~yEVIL  133 (194)
T 1ffk_I           81 -RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVIL  133 (194)
T ss_pred             -CCccccCccccCccccHHHHHHHHHhccCCCceeeeeEEeccCCceeEEEEEE
Confidence             99999999999999999999999999999999999999999999999999875

>3j21_M 50S ribosomal protein L15E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=1.4e-79  Score=499.43  Aligned_cols=132  Identities=44%  Similarity=0.753  Sum_probs=130.6

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      ||||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+|+|+|+|+ 
T Consensus         1 Mg~Y~yi~e~wkkk~s~~~~~l~r~R~~e~Rq~~ai~R~~rPTR~dkAR~LGYKAKQG~Vv~RvrVrrGgrkr~~pkg~-   79 (194)
T 3j21_M            1 MGMYKYIREAWKSPKKSYVGELLKQRMIKWRREPVVVRIERPTRLDRARALGYQAKQGYVIVRVRVRKGGRKRPRWKGG-   79 (194)
T ss_dssp             CCHHHHHHHHHHSTTSTTHHHHHHHHHHHHHHSCSEEEESSCSSHHHHHHHHCCCSTTEEEEEEEEESSCCCCCCCSSC-
T ss_pred             CcHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCccccCceEEEEEEEeeCCCCCCCcCCC-
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                       |||+|||||+||+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        80 -~kPk~~Gv~~lk~~kslq~iAEERagrk~~nLrVLNSYwV~eDg~yK~fEVIL  132 (194)
T 3j21_M           80 -RKPSKMGQVKYSPKKSLQWIAEEKAARKFPNLEVLNSYWVGEDGMYKWFEVIM  132 (194)
T ss_dssp             -CCTTTTCCSSCCCSSCHHHHHHHHHHHHSTTSEEEEEEEEEECSSEEEEEEEE
T ss_pred             -CCcccccccccCccccHHHHHHHHHhccCCCceeeeceeecCCCCceeEEEEE
Confidence             99999999999999999999999999999999999999999999999999774

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	153
d1vqom1	194	d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeo	8e-61

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 194

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  184 bits (468), Expect = 8e-61
 Identities = 49/122 (40%), Positives = 70/122 (57%), Gaps = 2/122 (1%)

Query: 2   GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVV 61
            AY+++ + W       +  LQ  R  E+R   ++ R+ RPTR DKAR  GYKAKQG +V
Sbjct: 3   SAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIV 62

Query: 62  YRVRVRRGGRKRPVPKGIVYGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWI 121
            RV VR+G  ++   K     +   QGVT++  ++  + VAEERA R    LRVLNSY +
Sbjct: 63  ARVSVRKGSARKRRHKA--GRRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSV 120

Query: 122 NE 123
            +
Sbjct: 121 GQ 122

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	153
d1vqom1	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0
d1ffki_	194	Ribosomal protein L15e {Archaeon Haloarcula marism	100.0

>d1vqom1 d.12.1.2 (M:1-194) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=7.1e-76  Score=475.61  Aligned_cols=132  Identities=37%  Similarity=0.552  Sum_probs=129.7

Q ss_pred             CchhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCcc
Q 031760            1 MGAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIV   80 (153)
Q Consensus         1 MgaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~   80 (153)
                      .|||+||+|+||+||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+++|+|+|+ 
T Consensus         2 ~saY~Yv~e~wkk~~~~~~~~L~r~R~~e~R~~~~i~Ri~rPtR~DrAR~LGYKAKqG~vi~RvRVRrGg~kr~~~kg~-   80 (194)
T d1vqom1           2 RSAYSYIRDAWENPGDGQLAELQWQRQQEWRNEGAVERIERPTRLDKARSQGYKAKQGVIVARVSVRKGSARKRRHKAG-   80 (194)
T ss_dssp             CCHHHHHHHHTTCTTSHHHHHHHHHHHHHHTTSCSEEEESSCTTHHHHHHTTCCSSTTEEEEEEEEECSSCCCCCCSSC-
T ss_pred             ccHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCchhHHHhcCcccCCcEEEEEEEEecCCCCCCCCCCC-
Confidence            4899999999999999999999999999999999999999999999999999999999999999999999999999998 


Q ss_pred             cCCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           81 YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        81 ~gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                       +|||+||||+||+++|+|+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 -~kpK~~Gv~~lk~~~~lq~iAEeRvgrk~~nLrVLNSYwV~qDg~yk~yEVIL  133 (194)
T d1vqom1          81 -RRSKRQGVTRITRRKDIQRVAEERASRTFPNLRVLNSYSVGQDGRQKWHEVIL  133 (194)
T ss_dssp             -CCGGGCCCSSCCCSSCHHHHHHHHHHHHSTTCEEEEEEEEEECSSEEEEEEEE
T ss_pred             -CCCCcCcccccCccccHHHHHHHHhcCcCCCcEeecceEecCCCceeEEEEEE
Confidence             89999999999999999999999999999999999999999999999999874

>d1ffki_ d.12.1.2 (I:) Ribosomal protein L15e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal proteins S24e, L23 and L15e
superfamily: Ribosomal proteins S24e, L23 and L15e
family: L15e
domain: Ribosomal protein L15e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=6.6e-76  Score=476.01  Aligned_cols=131  Identities=37%  Similarity=0.637  Sum_probs=129.3

Q ss_pred             chhHHHHHHHhccchhHHHHHHHHHHHHHhcCCceeEeCCCCcchhhhhccccccCceEEEEEEeeecCCCCCccCCccc
Q 031760            2 GAYTFVSELWRKKQSDVMRFLQRVRCWEYRQHPSIVRVTRPTRPDKARRLGYKAKQGYVVYRVRVRRGGRKRPVPKGIVY   81 (153)
Q Consensus         2 gaYkYi~elwkkkqsd~~r~L~r~R~we~Rq~~ai~Rv~rPTR~dkARrLGYKAKQG~VI~RVRVRrGgrkrp~pkg~~~   81 (153)
                      |||+||+|+|++||||+|+||+|+|||||||+|+|||+++||||||||+||||||||||||||||||||+++|+|+++  
T Consensus         3 s~Y~yv~e~wkkkqsd~~~~l~r~R~~e~R~~~~i~Ri~rPTR~DrAR~LGYKAKQG~vi~RvRVRrGgrkr~~~~~g--   80 (194)
T d1ffki_           3 SMYAYIREAWKRPYEGYVGELMWHRLQKWRREPAVVRIPRPTRLDRARALGYKAKKGIIVVRVRIRRGGRRATRPNKG--   80 (194)
T ss_pred             cHHHHHHHHHhcchhHHHHHHHHHHHHHHhccCceeecCCCCChhHHHhcCCccCceEEEEEEEeccCCCcCCCCCCC--
Confidence            799999999999999999999999999999999999999999999999999999999999999999999999999999  


Q ss_pred             CCcccccceecccccchhHHHHHHhhcccCCceeeeeeeeccCCchhHHHHHH
Q 031760           82 GKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVLNSYWINEVCSLISMSLCF  134 (153)
Q Consensus        82 gKPk~~Gvn~lk~~kslq~IAEERvgrk~~nLrVLNSYWV~eDg~yK~fe~~~  134 (153)
                      ++|++||||++|+++|||+|||||||++||||||||||||+|||+|||||.||
T Consensus        81 rrpk~~gv~~lk~~kslq~iAEERv~rk~~nLrVLNSYWV~qDg~~k~yEVIl  133 (194)
T d1ffki_          81 RKSKKMMVNRRPRKKNLQWIAEERANRKYPNMEVLNSYWVGEDGRYKWFEVIL  133 (194)
T ss_pred             ccCCCCcccccCccccHHHHHHHHhhccCCCcEeeeeEEEcCCCceeEEEEEE
Confidence            89999999999999999999999999999999999999999999999999875