Citrus Sinensis ID: 031830

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccccccccEEEEccccHHHHHHHHHHHccccccccccccccccccccccccccEEEEEcccccEEEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEccccccccccccEEEEcccccccccccccccccccccHHHHHccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccHcccEEEcEEccccccccccEEEEEEEcccccEEEEEEEcccccc
Coil and Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVettedswphrqnvvACACVCKRWREITKDivkspflsgkitfpsclkqpgprefphqclirrnkkTSTFYLYLALTPCKL
Flexible Loop (DISEMBL)
mslrnsclsrrisrsfgeahkssketglgaaddSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVEttedswphrqnvVACACVCKRWREITKdivkspflsgkitfpsclkqpgpREFPHQCLIRRNKKTSTFYLYLALTPCKL
Low Complexity Region (SEG)
MSLRNSCLSRRISRSFGEAHKSSKETGLGaaddsvvssttsasmdsgaaaahssgswagLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL
Disordered region (IsUnstruct)
********************************************************WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTP***
Disordered Region (DISOPRED)
*********************************************************AGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL
Disordered Region (DISEMBL)
********SRRISRS***************************************GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL
Disordered Region (DISPRO)
*SLRNSCLSRRISRSFGEAHKSSKETGLG*******************A**HSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTP***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
Q93VI8	379	Tubby-like F-box protein	yes	no	0.894	0.358	0.590	2e-41
Q5QM27	356	Tubby-like F-box protein	yes	no	0.605	0.258	0.655	3e-32
Q68Y48	372	Tubby-like F-box protein	yes	no	0.605	0.247	0.630	1e-30
Q94DT9	368	Tubby-like F-box protein	no	no	0.605	0.25	0.597	2e-29
Q6Z2G9	428	Tubby-like F-box protein	no	no	0.625	0.221	0.589	4e-29
Q53PP5	440	Tubby-like F-box protein	no	no	0.618	0.213	0.606	1e-28
Q69U54	451	Tubby-like F-box protein	no	no	0.986	0.332	0.448	1e-28
Q9ZP59	455	Tubby-like F-box protein	no	no	0.631	0.210	0.572	3e-28
Q8VY21	406	Tubby-like F-box protein	no	no	0.769	0.288	0.483	7e-28
Q0WPY0	413	Tubby-like F-box protein	no	no	0.618	0.227	0.563	3e-27

>sp|Q93VI8|TLP7_ARATH Tubby-like F-box protein 7 OS=Arabidopsis thaliana GN=TULP7 PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 101/149 (67%), Gaps = 13/149 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           PGPR+F +QCLI+RNKKTSTFYLYLALTP
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTP 136

Arabidopsis thaliana (taxid: 3702)

>sp|Q5QM27|TLP1_ORYSJ Tubby-like F-box protein 1 OS=Oryza sativa subsp. japonica GN=TULP1 PE=2 SV=1

 Score =  137 bits (344), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 74/93 (79%), Gaps = 1/93 (1%)

Query: 57  WAGLLPELLGEIIRRVETTE-DSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFP 115
           WA LLPEL+ E++RRVE +  + WP R++VV+CACVC+RWR+    +V+ P  SGKITFP
Sbjct: 34  WARLLPELMSEVVRRVEASGGERWPARKDVVSCACVCRRWRDAAVAVVRPPAESGKITFP 93

Query: 116 SCLKQPGPREFPHQCLIRRNKKTSTFYLYLALT 148
           S LKQPGPREFP QC I+RNKK STFYLYL LT
Sbjct: 94  SSLKQPGPREFPMQCFIKRNKKNSTFYLYLGLT 126

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q68Y48|TLP9_ORYSJ Tubby-like F-box protein 9 OS=Oryza sativa subsp. japonica GN=TULP9 PE=2 SV=1

 Score =  132 bits (331), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 58/92 (63%), Positives = 71/92 (77%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ LLPELL EI+RRV+   + WP R++VVACACVC+RWR+    +V+ P   G+ITFPS
Sbjct: 52  WSRLLPELLTEIMRRVDAGAERWPPRRDVVACACVCRRWRDAAVSVVRPPLECGRITFPS 111

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALT 148
            LKQPGPR+ P  C IRRNKK STFYLYL+LT
Sbjct: 112 SLKQPGPRDAPMHCFIRRNKKNSTFYLYLSLT 143

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q94DT9|TLP2_ORYSJ Tubby-like F-box protein 2 OS=Oryza sativa subsp. japonica GN=TULP2 PE=2 SV=1

 Score =  127 bits (320), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 71/92 (77%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W+ L+P+LL +I+R VE   + WP R++VVACA VC+RWR++   +V+ P  SGKITFPS
Sbjct: 51  WSALVPDLLADILRCVEAGSERWPPRRDVVACASVCRRWRDVAVAVVQPPLESGKITFPS 110

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALT 148
            LKQPGPR+ P QC I+RNKK STF+LYL LT
Sbjct: 111 SLKQPGPRDAPMQCFIKRNKKNSTFFLYLGLT 142

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z2G9|TLP5_ORYSJ Tubby-like F-box protein 5 OS=Oryza sativa subsp. japonica GN=TULP5 PE=2 SV=1

 Score =  127 bits (318), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 56/95 (58%), Positives = 73/95 (76%)

Query: 55  GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITF 114
           G WA L PELL ++I+RVE +E +WP R+ VVACA VC+ WRE+TK++VK+    G+ITF
Sbjct: 66  GRWANLPPELLLDVIQRVEASEATWPARRQVVACAAVCRSWREVTKEVVKTLEECGRITF 125

Query: 115 PSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           P  LKQPGPRE P QC +RR++ TST+ LYL L+P
Sbjct: 126 PISLKQPGPREHPVQCFVRRDRATSTYLLYLGLSP 160

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q53PP5|TLP13_ORYSJ Tubby-like F-box protein 13 OS=Oryza sativa subsp. japonica GN=TULP13 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 72/94 (76%)

Query: 54  SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKIT 113
           S  WA L PELL +II R+E +E +WP R++VVACA VC+ WRE+ K+IVK+P L GKIT
Sbjct: 50  SSCWASLPPELLRDIIERLEESEATWPSRKHVVACAGVCRTWREMCKEIVKNPELCGKIT 109

Query: 114 FPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLAL 147
           FP  L+QPGPR+   QC IRR+K T T+YLYL+L
Sbjct: 110 FPISLRQPGPRDGTMQCFIRRDKSTQTYYLYLSL 143

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q69U54|TLP12_ORYSJ Tubby-like F-box protein 12 OS=Oryza sativa subsp. japonica GN=TULP12 PE=2 SV=1

 Score =  125 bits (313), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 70/156 (44%), Positives = 93/156 (59%), Gaps = 6/156 (3%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKE---TGL-GAADDSVVSSTTSASMDSGAAAAHSSGS 56
           MS R+  + R +  SFG   + S E   +GL G +      S  S S             
Sbjct: 1   MSFRS--IVRDVRDSFGSLSRRSFEVRISGLPGLSGHHRGKSLGSLSELRDRPVVVDQSR 58

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W GL PELL ++++R+E  E +WP R++VVACA VC+ WREI KDIV+SP + GK+TFP 
Sbjct: 59  WVGLPPELLRDVMKRLEEGESNWPSRKDVVACAAVCRTWREICKDIVQSPEICGKLTFPV 118

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL 152
            LKQPGPR+   QC I+R+K   T+YLYL L+P  L
Sbjct: 119 SLKQPGPRDGLIQCFIKRDKSKLTYYLYLCLSPAVL 154

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZP59|TLP1_ARATH Tubby-like F-box protein 1 OS=Arabidopsis thaliana GN=TULP1 PE=2 SV=1

 Score =  124 bits (310), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 55/96 (57%), Positives = 73/96 (76%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           WA L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP 
Sbjct: 57  WANLPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPV 116

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL 152
            LKQPGPR+   QC I+R+K   T++LYL L+P  L
Sbjct: 117 SLKQPGPRDATMQCFIKRDKSNLTYHLYLCLSPALL 152

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY21|TLP3_ARATH Tubby-like F-box protein 3 OS=Arabidopsis thaliana GN=TULP3 PE=2 SV=1

 Score =  122 bits (307), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/122 (48%), Positives = 76/122 (62%), Gaps = 5/122 (4%)

Query: 27  GLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV 86
           G G +    V   TS  +D     A     WA + PELL +++ R+E +ED+WP R+NVV
Sbjct: 27  GYGRSRSQRVVQDTSVPVD-----AFKQSCWASMPPELLRDVLMRIEQSEDTWPSRKNVV 81

Query: 87  ACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLA 146
           +CA VC+ WREI K+IV+ P LS K+TFP  LKQPGPR    QC I RN+   T+YLYL 
Sbjct: 82  SCAGVCRNWREIVKEIVRVPELSSKLTFPISLKQPGPRGSLVQCYIMRNRSNQTYYLYLG 141

Query: 147 LT 148
           L 
Sbjct: 142 LN 143

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WPY0|TLP6_ARATH Tubby-like F-box protein 6 OS=Arabidopsis thaliana GN=TULP6 PE=2 SV=1

 Score =  120 bits (302), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 69/94 (73%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPS 116
           W  L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP 
Sbjct: 69  WVDLPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPI 128

Query: 117 CLKQPGPREFPHQCLIRRNKKTSTFYLYLALTPC 150
            L+QPGPR+ P QC I+R + T  + LYL L+P 
Sbjct: 129 SLRQPGPRDAPIQCFIKRERATGIYRLYLGLSPA 162

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
302399099	378	TLP domain class transcription factor [M	0.940	0.378	0.628	4e-44
356549655	381	PREDICTED: tubby-like F-box protein 7-li	0.921	0.367	0.557	8e-44
356544096	378	PREDICTED: tubby-like F-box protein 7-li	0.907	0.365	0.577	3e-43
255567112	381	conserved hypothetical protein [Ricinus	0.967	0.385	0.577	9e-42
357452139	371	Tubby-like F-box protein [Medicago trunc	0.875	0.358	0.547	4e-40
297853112	382	hypothetical protein ARALYDRAFT_892366 [	0.901	0.358	0.589	9e-40
18404413	379	Tubby-like F-box protein 7 [Arabidopsis	0.894	0.358	0.590	1e-39
7769867	579	F12M16.22 [Arabidopsis thaliana]	0.894	0.234	0.590	2e-39
224116990	332	predicted protein [Populus trichocarpa]	0.592	0.271	0.793	9e-39
312283521	354	unnamed protein product [Thellungiella h	0.657	0.282	0.73	3e-38

>gi|302399099|gb|ADL36844.1| TLP domain class transcription factor [Malus x domestica]

 Score =  182 bits (462), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 111/148 (75%), Gaps = 5/148 (3%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR +  SR+ S+SF E   S ++   G  D  VV  +  A   S  +++      + +
Sbjct: 1   MSLRKAFRSRKFSKSFRELKLSDEDQARGG-DRRVVRDSDCADSSSSTSSSSW----SDM 55

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE +ED WPHR+NVVACACVCKRWR+ITK+I +SP  SGKITFPSCLKQ
Sbjct: 56  LPELLGEIIRRVEASEDKWPHRKNVVACACVCKRWRDITKEIARSPSYSGKITFPSCLKQ 115

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALT 148
           PGPR+FPHQCLI+RNKKTSTFYLYLALT
Sbjct: 116 PGPRDFPHQCLIKRNKKTSTFYLYLALT 143

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549655|ref|XP_003543207.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  181 bits (459), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 83/149 (55%), Positives = 107/149 (71%), Gaps = 9/149 (6%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ SRSF E   +     +G  D             +G  +++ +  W+ +
Sbjct: 1   MSLRKVFRSRKFSRSFKEVLPAEGAAIVGGED---------GVAGAGEESSNGNNGWSNM 51

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFP+CLKQ
Sbjct: 52  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPACLKQ 111

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           PGPR+ PHQCLI+RNKKTSTFYLYLALTP
Sbjct: 112 PGPRDVPHQCLIKRNKKTSTFYLYLALTP 140

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356544096|ref|XP_003540491.1| PREDICTED: tubby-like F-box protein 7-like [Glycine max]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 109/149 (73%), Gaps = 11/149 (7%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSLR    SR+ S+SF E   +      GAA +  V+ T         AA  ++  W+ +
Sbjct: 1   MSLRKVFRSRKFSKSFKEVLPAE-----GAAVEGGVAGTVEE------AANGNNNGWSSM 49

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPE+LGEI+RRV+  E+ WP+RQNVVACACVCKRWR+IT+++V+ P  +GKITFPSCLKQ
Sbjct: 50  LPEILGEIVRRVDAAEEQWPNRQNVVACACVCKRWRDITREVVRVPSHTGKITFPSCLKQ 109

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           PGPR+ PHQCLI+RN+KTSTFYLYLALTP
Sbjct: 110 PGPRDVPHQCLIKRNQKTSTFYLYLALTP 138

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255567112|ref|XP_002524538.1| conserved hypothetical protein [Ricinus communis] gi|223536212|gb|EEF37865.1| conserved hypothetical protein [Ricinus communis]

 Score =  174 bits (442), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 86/149 (57%), Positives = 99/149 (66%), Gaps = 2/149 (1%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL+    SRR S+SF   +   ++  L      V         D           W  +
Sbjct: 1   MSLKKLIRSRRFSKSFKCVNNHKEDIALVVP--GVHDGGGGGGGDELWGEWEERDGWGSM 58

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEII+RVE +ED WP RQNVVACACVCK+WREI KDIVKSP  +GKITFPSCLK 
Sbjct: 59  LPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREIAKDIVKSPNNTGKITFPSCLKL 118

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           PGP + P+QCLI+RNKKTSTFYLYLALTP
Sbjct: 119 PGPHDLPYQCLIKRNKKTSTFYLYLALTP 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357452139|ref|XP_003596346.1| Tubby-like F-box protein [Medicago truncatula] gi|87241115|gb|ABD32973.1| Tubby; Cyclin-like F-box [Medicago truncatula] gi|355485394|gb|AES66597.1| Tubby-like F-box protein [Medicago truncatula]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 81/148 (54%), Positives = 101/148 (68%), Gaps = 15/148 (10%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           MSL     SR+ S+SF E                 + +      D+G  +A  +  W+ +
Sbjct: 1   MSLMKVFRSRKYSKSFKEVQS--------------IDTVADDRRDAGGESADGT-DWSTM 45

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LP+LL EII+RV+  E+ WPHRQNVVACACVCKRWR+IT++IVKSP  +G ITFPSCLKQ
Sbjct: 46  LPDLLAEIIKRVDVAEEQWPHRQNVVACACVCKRWRDITREIVKSPQRNGTITFPSCLKQ 105

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALT 148
           PGPR+ PH CLI+R+KKTSTFYLYLALT
Sbjct: 106 PGPRDLPHHCLIKRSKKTSTFYLYLALT 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853112|ref|XP_002894437.1| hypothetical protein ARALYDRAFT_892366 [Arabidopsis lyrata subsp. lyrata] gi|297340279|gb|EFH70696.1| hypothetical protein ARALYDRAFT_892366 [Arabidopsis lyrata subsp. lyrata]

 Score =  167 bits (424), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 89/151 (58%), Positives = 106/151 (70%), Gaps = 14/151 (9%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGS-WAG 59
           M L  S LSRRIS SF   H+               ++  S S +S    ++ +GS W+ 
Sbjct: 1   MPLSRSLLSRRISNSFRFHHQGE------------TTAPESDSYESIPPPSNMAGSSWSA 48

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFL-SGKITFPSCL 118
           +LPELLGEIIRRVE TEDSWP R++VV CACV K+WREIT+D  +S  L SGKITFPSCL
Sbjct: 49  MLPELLGEIIRRVEETEDSWPQRRDVVTCACVSKKWREITQDFARSSSLNSGKITFPSCL 108

Query: 119 KQPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           K PGPR+F +QCLI+RNKKTSTFYLYLALTP
Sbjct: 109 KLPGPRDFSNQCLIKRNKKTSTFYLYLALTP 139

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18404413|ref|NP_564627.1| Tubby-like F-box protein 7 [Arabidopsis thaliana] gi|75249264|sp|Q93VI8.1|TLP7_ARATH RecName: Full=Tubby-like F-box protein 7; Short=AtTLP7 gi|13877767|gb|AAK43961.1|AF370146_1 unknown protein [Arabidopsis thaliana] gi|16323400|gb|AAL15194.1| unknown protein [Arabidopsis thaliana] gi|33413451|gb|AAM18187.1| tubby-like protein 7 [Arabidopsis thaliana] gi|332194803|gb|AEE32924.1| Tubby-like F-box protein 7 [Arabidopsis thaliana]

 Score =  167 bits (423), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 101/149 (67%), Gaps = 13/149 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 1   MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 47

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 48  LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 107

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           PGPR+F +QCLI+RNKKTSTFYLYLALTP
Sbjct: 108 PGPRDFSNQCLIKRNKKTSTFYLYLALTP 136

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7769867|gb|AAF69545.1|AC008007_20 F12M16.22 [Arabidopsis thaliana]

 Score =  166 bits (421), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 101/149 (67%), Gaps = 13/149 (8%)

Query: 1   MSLRNSCLSRRISRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGL 60
           M L  S LSRRIS SF   H+   ET      +S+   +  A           S SW+ +
Sbjct: 168 MPLSRSLLSRRISNSF-RFHQG--ETTTAPESESIPPPSNMAG----------SSSWSAM 214

Query: 61  LPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQ 120
           LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK 
Sbjct: 215 LPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLKL 274

Query: 121 PGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           PGPR+F +QCLI+RNKKTSTFYLYLALTP
Sbjct: 275 PGPRDFSNQCLIKRNKKTSTFYLYLALTP 303

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116990|ref|XP_002331802.1| predicted protein [Populus trichocarpa] gi|222874498|gb|EEF11629.1| predicted protein [Populus trichocarpa]

 Score =  164 bits (416), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 77/97 (79%), Positives = 84/97 (86%), Gaps = 7/97 (7%)

Query: 60  LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKS-PFL------SGKI 112
           +LPELLGEII+RVE +ED WP RQNVVACACVCK+WRE+TKDIVKS P        SGKI
Sbjct: 1   MLPELLGEIIKRVEESEDRWPQRQNVVACACVCKKWREVTKDIVKSLPNNNNNNGSSGKI 60

Query: 113 TFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           TFPSCLKQPGPR+ PHQCLI+RNKKTSTFYLYLALTP
Sbjct: 61  TFPSCLKQPGPRDLPHQCLIKRNKKTSTFYLYLALTP 97

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312283521|dbj|BAJ34626.1| unnamed protein product [Thellungiella halophila]

 Score =  163 bits (412), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 86/100 (86%)

Query: 50  AAHSSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLS 109
           ++ + GSW+ +LPELLGEIIRRVE +ED WP R++VV CACV K+WR IT+DIVK P  S
Sbjct: 5   SSDTPGSWSAMLPELLGEIIRRVEESEDQWPQRRDVVTCACVSKKWRGITQDIVKFPNNS 64

Query: 110 GKITFPSCLKQPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           GKITFPSCLK PGPREF +QCLI+RNKKTSTFYLYL+LTP
Sbjct: 65  GKITFPSCLKLPGPREFSNQCLIKRNKKTSTFYLYLSLTP 104

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2009610	379	TLP7 "AT1G53320" [Arabidopsis	0.592	0.237	0.766	4.5e-38
TAIR|locus:2025327	455	TLP1 "AT1G76900" [Arabidopsis	0.611	0.204	0.569	3.3e-25
TAIR|locus:2036730	413	TLP6 "AT1G47270" [Arabidopsis	0.592	0.217	0.577	9.7e-25
TAIR|locus:2062121	394	TLP2 "AT2G18280" [Arabidopsis	0.592	0.228	0.577	1.8e-23
TAIR|locus:2194686	429	TLP5 "AT1G43640" [Arabidopsis	0.605	0.214	0.537	1.7e-22
TAIR|locus:2032950	445	TLP10 "AT1G25280" [Arabidopsis	0.611	0.208	0.516	2e-22
TAIR|locus:2081101	380	TLP9 "AT3G06380" [Arabidopsis	0.578	0.231	0.566	1.7e-21
TAIR|locus:2180034	389	TLP11 "AT5G18680" [Arabidopsis	0.565	0.221	0.517	9.3e-19

TAIR|locus:2009610 TLP7 "AT1G53320" [Arabidopsis thaliana (taxid:3702)]

 Score = 377 (137.8 bits), Expect = 4.5e-38, Sum P(2) = 4.5e-38
 Identities = 69/90 (76%), Positives = 77/90 (85%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             +LPELLGEIIRRVE TED WP R++VV CACV K+WREIT D  +S   SGKITFPSCLK
Sbjct:    47 MLPELLGEIIRRVEETEDRWPQRRDVVTCACVSKKWREITHDFARSSLNSGKITFPSCLK 106

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
              PGPR+F +QCLI+RNKKTSTFYLYLALTP
Sbjct:   107 LPGPRDFSNQCLIKRNKKTSTFYLYLALTP 136

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2025327 TLP1 "AT1G76900" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 3.3e-25, P = 3.3e-25
 Identities = 53/93 (56%), Positives = 71/93 (76%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E  WP R++VVACA VC+ WR++ K+IV+SP LSGKITFP  LK
Sbjct:    60 LPPELLRDVIKRLEESESVWPARRHVVACASVCRSWRDMCKEIVQSPELSGKITFPVSLK 119

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL 152
             QPGPR+   QC I+R+K   T++LYL L+P  L
Sbjct:   120 QPGPRDATMQCFIKRDKSNLTYHLYLCLSPALL 152

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0043687 "post-translational protein modification" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2036730 TLP6 "AT1G47270" [Arabidopsis thaliana (taxid:3702)]

 Score = 282 (104.3 bits), Expect = 9.7e-25, P = 9.7e-25
 Identities = 52/90 (57%), Positives = 68/90 (75%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II+R+E+ +  WP R++VVACA VCK WRE+TK++VK P LSG ITFP  L+
Sbjct:    72 LPPELLLDIIQRIESEQSLWPGRRDVVACASVCKSWREMTKEVVKVPELSGLITFPISLR 131

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
             QPGPR+ P QC I+R + T  + LYL L+P
Sbjct:   132 QPGPRDAPIQCFIKRERATGIYRLYLGLSP 161

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009555 "pollen development" evidence=IMP

TAIR|locus:2062121 TLP2 "AT2G18280" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 52/90 (57%), Positives = 64/90 (71%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL +II RVE +E +WP R  VV+CA VCK WR IT +IV+ P   GK+TFP  LK
Sbjct:    51 LPPELLHDIIWRVEESETAWPARAAVVSCASVCKSWRGITMEIVRIPEQCGKLTFPISLK 110

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
             QPGPR+ P QC I+RN+ T+T+ LY  L P
Sbjct:   111 QPGPRDSPIQCFIKRNRATATYILYYGLMP 140

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005829 "cytosol" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2194686 TLP5 "AT1G43640" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 1.7e-22, P = 1.7e-22
 Identities = 50/93 (53%), Positives = 69/93 (74%)

Query:    61 LPE-LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             LP  LL +++++++ +E +WP R+ VVACA VCK WR + KDIVKSP  SGK+TFP  LK
Sbjct:    58 LPAALLRDVMKKLDESESTWPARKQVVACAGVCKTWRLMCKDIVKSPEFSGKLTFPVSLK 117

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL 152
             QPGPR+   QC I+R+K   T++LYL+L+P  L
Sbjct:   118 QPGPRDGIIQCYIKRDKSNMTYHLYLSLSPAIL 150

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2032950 TLP10 "AT1G25280" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 2.0e-22, P = 2.0e-22
 Identities = 48/93 (51%), Positives = 68/93 (73%)

Query:    60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLK 119
             L PELL ++I+R+E +E +WP R++VVACA VC+ WR + ++IV  P + GK+TFP  LK
Sbjct:    62 LPPELLFDVIKRLEESESNWPARKHVVACASVCRSWRAMCQEIVLGPEICGKLTFPVSLK 121

Query:   120 QPGPREFPHQCLIRRNKKTSTFYLYLALTPCKL 152
             QPGPR+   QC I+R+K   TF+L+L L+P  L
Sbjct:   122 QPGPRDAMIQCFIKRDKSKLTFHLFLCLSPALL 154

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005886 "plasma membrane" evidence=IDA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2081101 TLP9 "AT3G06380" [Arabidopsis thaliana (taxid:3702)]

 Score = 252 (93.8 bits), Expect = 1.7e-21, P = 1.7e-21
 Identities = 51/90 (56%), Positives = 64/90 (71%)

Query:    61 LPE-LLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCL 118
             LPE LL EI+ RVET +   WP R+NVVACA VC+ WR +TK+IV  P  S K+TFP  L
Sbjct:    36 LPEELLREILIRVETVDGGDWPSRRNVVACAGVCRSWRILTKEIVAVPEFSSKLTFPISL 95

Query:   119 KQPGPREFPHQCLIRRNKKTSTFYLYLALT 148
             KQ GPR+   QC I+RN+ T +++LYL LT
Sbjct:    96 KQSGPRDSLVQCFIKRNRNTQSYHLYLGLT 125

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0009620 "response to fungus" evidence=IMP

TAIR|locus:2180034 TLP11 "AT5G18680" [Arabidopsis thaliana (taxid:3702)]

 Score = 229 (85.7 bits), Expect = 9.3e-19, P = 9.3e-19
 Identities = 45/87 (51%), Positives = 60/87 (68%)

Query:    63 ELLGEIIRRVETTEDS-WPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQP 121
             ELL EI+ RVE  +   WP R++VVACA VC+ WR +  + V  P +S K+TFP  LKQP
Sbjct:    45 ELLREILIRVEAADGGGWPSRRSVVACAGVCRGWRLLMNETVVVPEISSKLTFPISLKQP 104

Query:   122 GPREFPHQCLIRRNKKTSTFYLYLALT 148
             GPR+   QC I+RN+ T +++LYL LT
Sbjct:   105 GPRDSLVQCFIKRNRITQSYHLYLGLT 131


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.323   0.136   0.435    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      152       122   0.00091  102 3  11 22  0.47    30
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  8
  No. of states in DFA:  580 (62 KB)
  Total size of DFA:  136 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.18u 0.12s 11.30t   Elapsed:  00:00:01
  Total cpu time:  11.18u 0.12s 11.30t   Elapsed:  00:00:01
  Start:  Mon May 20 15:11:18 2013   End:  Mon May 20 15:11:19 2013

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0008081 "phosphoric diester hydrolase activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_105160.1 annotation not avaliable (382 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG2502	355	consensus Tub family proteins [General function pr	100.0
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.54
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	98.34
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.33
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	98.15
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	94.09
KOG2997	366	consensus F-box protein FBX9 [General function pre	93.34

>KOG2502 consensus Tub family proteins [General function prediction only]

Probab=100.00  E-value=3.2e-37  Score=268.95  Aligned_cols=97  Identities=52%  Similarity=0.927  Sum_probs=95.3

Q ss_pred             CCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHhcCCCcccceeccccccCCCCCCCCeeeEEee
Q 031830           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLSGKITFPSCLKQPGPREFPHQCLIRR  134 (152)
Q Consensus        55 s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV~~pe~sgkiTFPislKQPGPRd~~~QCfIkR  134 (152)
                      +.|++||||+|.|||.|+|++|+.||+|++||+||+||+.||++++|||++|+.+|++|||++||||||||.++||||||
T Consensus        43 ~~~~~l~~~~L~d~~~r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~v~~~~~~~k~~~~~~l~qP~P~~~~~qC~I~R  122 (355)
T KOG2502|consen   43 SLWAALPPELLSDVLKRDEESEDTWPSRRNVVSCAGVCDKWREISKEIVAPPEPSSKLTFPASLKQPGPRGVLVQCYIKR  122 (355)
T ss_pred             chhhcCCHhHHHHHhhhccccccccccccccccccchhhhhhhhccccccCCccccccchhHHhcCCCCCCceEEEEEEE
Confidence            78999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCceeEEeeccccCC
Q 031830          135 NKKTSTFYLYLALTPCK  151 (152)
Q Consensus       135 nk~~sTy~LyLgLt~a~  151 (152)
                      ||+++|||||+||.+++
T Consensus       123 dks~~~~~Ly~~l~~~l  139 (355)
T KOG2502|consen  123 DKSGMDRGLYLSLYLHL  139 (355)
T ss_pred             ccCCCceeeeecccccc
Confidence            99999999999998764

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.54  E-value=2.4e-08  Score=62.27  Aligned_cols=36  Identities=31%  Similarity=0.646  Sum_probs=31.0

Q ss_pred             CCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        57 WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      |.+||+|+|..||..++.        +|+..|+.|||+|+.++.
T Consensus         1 i~~LP~Eil~~If~~L~~--------~dl~~~~~vcr~w~~~~~   36 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDP--------RDLLRLSLVCRRWRRIAN   36 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-H--------HHHHHHTTSSHHHHHHHT
T ss_pred             ChHhHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHHC
Confidence            789999999999999933        489999999999999984

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=98.34  E-value=2.6e-07  Score=81.81  Aligned_cols=69  Identities=22%  Similarity=0.365  Sum_probs=49.5

Q ss_pred             CCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHHh-cCCCcccceeccccccC---CCCCCCCeee
Q 031830           55 GSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIV-KSPFLSGKITFPSCLKQ---PGPREFPHQC  130 (152)
Q Consensus        55 s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEiV-~~pe~sgkiTFPislKQ---PGPRd~~~QC  130 (152)
                      ..|++||+|||..|..||       |++-|++.-++||++||..+...- ++|..+-   ..+-+++   +.|-.. .+|
T Consensus         2 ~~Ws~Lp~dll~~i~~~l-------~~~~d~~~~~~vC~sWr~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~   70 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRL-------FSNVELKRFRSICRSWRSSVSGVGKKNPFRTR---PLILFNPINPSETLTD-DRS   70 (373)
T ss_pred             CChhhCCHHHHHHHHhhC-------CcHHHHHHHHhhhhhHHHhcccccccCCcccc---cccccCcccCCCCccc-ccc
Confidence            469999999999999999       999999999999999999876532 1221111   1122333   444443 778


Q ss_pred             EEee
Q 031830          131 LIRR  134 (152)
Q Consensus       131 fIkR  134 (152)
                      +|++
T Consensus        71 ~~~~   74 (373)
T PLN03215         71 YISR   74 (373)
T ss_pred             cccc
Confidence            8887

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.33  E-value=6.1e-08  Score=59.70  Aligned_cols=39  Identities=26%  Similarity=0.520  Sum_probs=32.3

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHH
Q 031830           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI  102 (152)
Q Consensus        56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEi  102 (152)
                      .|.+||+|++.+||.+++.        +++++|+.||++|+.++++.
T Consensus         2 ~~~~LP~~il~~Il~~l~~--------~~~~~l~~vsk~~~~~~~~~   40 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDP--------KDLLRLSLVSKRWRSLVDSP   40 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-H--------HHHHHHCTT-HHHHHHHTTH
T ss_pred             CHHHCCHHHHHHHHHHCcH--------HHHHHHHHHhhHHHHHHcCC
Confidence            4789999999999999955        57999999999999998764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=98.15  E-value=6.4e-07  Score=52.53  Aligned_cols=34  Identities=29%  Similarity=0.655  Sum_probs=30.7

Q ss_pred             CCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           60 LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        60 LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      ||+|++..|+.+|       +. +++.+|+.|||+||.++.+
T Consensus         1 lP~~ll~~I~~~l-------~~-~d~~~~~~vc~~~~~~~~~   34 (41)
T smart00256        1 LPDEILEEILSKL-------PP-KDLLRLRKVSRRWRSLIDS   34 (41)
T ss_pred             CCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhcC
Confidence            7999999999999       55 7999999999999998864

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=94.09  E-value=0.017  Score=52.57  Aligned_cols=56  Identities=27%  Similarity=0.475  Sum_probs=43.3

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHHH--hcCCCcccceecccccc
Q 031830           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDI--VKSPFLSGKITFPSCLK  119 (152)
Q Consensus        56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kEi--V~~pe~sgkiTFPislK  119 (152)
                      .|-.||.|+|.+||.-|        .-++....++||++|.+++.+=  -......|+.--|+++-
T Consensus        97 ~~~slpDEill~IFs~L--------~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~  154 (419)
T KOG2120|consen   97 SWDSLPDEILLGIFSCL--------CKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLG  154 (419)
T ss_pred             CcccCCHHHHHHHHHhc--------cHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHH
Confidence            39999999999999988        4589999999999999988752  24455556655555543

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=93.34  E-value=0.037  Score=49.93  Aligned_cols=44  Identities=18%  Similarity=0.249  Sum_probs=33.8

Q ss_pred             CCCCCC---CCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           54 SGSWAG---LLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        54 ~s~WA~---LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      |+.|-+   ||+|+|-.||+++-.+.   =.-++.+.|++|||.|+-.++
T Consensus       101 qp~~~~~~~LPdEvLm~I~~~vv~~~---~d~rsL~~~s~vCr~F~~~~R  147 (366)
T KOG2997|consen  101 QPELISISVLPDEVLMRIFRWVVSSL---LDLRSLEQLSLVCRGFYKCAR  147 (366)
T ss_pred             chhhhhhhhCCHHHHHHHHHHHHhhh---cchhhHHHhHhhHHHHHHHHc
Confidence            567755   99999999999995332   123678899999999877654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3c5n_A	246	Tubby-related protein 1; inositol, signalling, alt	5e-09
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	2e-08
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	3e-05
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-04

>3c5n_A Tubby-related protein 1; inositol, signalling, alternative splicing, disease mutation, polymorphism, retinitis pigmentosa, sensory transduction; HET: I3P; 1.80A {Homo sapiens} PDB: 1i7e_A* 1c8z_A Length = 246

 Score = 52.1 bits (124), Expect = 5e-09
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           + +P P+    +C + R+KK     +Y +   
Sbjct: 5   VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFL 36

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A* Length = 276

 Score = 50.6 bits (120), Expect = 2e-08
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYLALTP 149
           + +P P+    +C + R+KK     +Y +   
Sbjct: 29  VLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFL 60

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A Length = 297

 Score = 41.5 bits (96), Expect = 3e-05
 Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 13  SRSFGEAHKSSKETGLGAADDSVVSSTTSASMDSGAAAAHSSGSWAGLLPELLGEIIRRV 72
             S     ++S E     A     +             A +    A L   LL  ++  +
Sbjct: 7   PESVSHPEEASPEEQPEEAGAEASAEEEQLREAEEEEEAEAVEYLAELPEPLLLRVLAEL 66

Query: 73  ETTEDSWPHRQNVVACACVCKRWREITKD 101
                  P  + V AC  VC RW+E+   
Sbjct: 67  -------PATELVQACRLVCLRWKELVDG 88

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 7/54 (12%), Positives = 24/54 (44%), Gaps = 7/54 (12%)

Query: 56  SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKDIVKSPFLS 109
           S    + +++ +++  +   +D         + + VC+RW +I  +  +   ++
Sbjct: 12  SCVATVDDVIEQVMTYITDPKD-------RDSASLVCRRWFKIDSETREHVTMA 58

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
2fim_A	276	Tubby related protein 1; tubby filled-barrel, beta	98.77
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.73
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	98.05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.89
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.87
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	97.37
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.34
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	97.11
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	96.86
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	96.83

>2fim_A Tubby related protein 1; tubby filled-barrel, beta-barrel, filled-beta-roll, 12-stran barrel, helix-filled-barrel, retinitis pigmentosa; HET: 3DP; 1.90A {Homo sapiens} PDB: 1s31_A*

Probab=98.77  E-value=3.2e-09  Score=88.87  Aligned_cols=30  Identities=27%  Similarity=0.610  Sum_probs=26.0

Q ss_pred             cccCCCCCCCCeeeEEeecCCC------ceeEEeec
Q 031830          117 CLKQPGPREFPHQCLIRRNKKT------STFYLYLA  146 (152)
Q Consensus       117 slKQPGPRd~~~QCfIkRnk~~------sTy~LyLg  146 (152)
                      -||||||||.++||||+|||++      .||||||.
T Consensus        28 fl~~P~P~~~~iqC~I~R~k~g~~~g~yp~y~L~l~   63 (276)
T 2fim_A           28 FVLRPAPQGRTVRCRLTRDKKGMDRGMYPSYFLHLD   63 (276)
T ss_dssp             GGGSCCCTTCCEEEEEEEEC-------CCEEEEEEC
T ss_pred             HhcCCCCCCCeEEEEEEEeCCCCCCCCceEEEEEEe
Confidence            3999999999999999999998      49999995

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.73  E-value=3.1e-09  Score=66.31  Aligned_cols=40  Identities=30%  Similarity=0.525  Sum_probs=33.2

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      .+..|++||+|+|..||.+|       |. ++++.|+.|||+|+.++.
T Consensus         5 ~~~~~~~LP~eil~~I~~~L-------~~-~dl~~~~~Vck~w~~~~~   44 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS   44 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred             CCCCHHHCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence            35679999999999999999       43 689999999999999875

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=98.05  E-value=1.2e-06  Score=67.36  Aligned_cols=40  Identities=30%  Similarity=0.519  Sum_probs=34.4

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      .+..|.+||+|+|..||.+|       +.+ +++.|+.|||+|++++.
T Consensus         5 ~~~~~~~LP~eil~~If~~L-------~~~-d~~~~~~vc~~W~~~~~   44 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCL-------CLP-ELLKVSGVCKRWYRLAS   44 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTS-------CHH-HHHHTTSSCHHHHHHHT
T ss_pred             ccCChhhCCHHHHHHHHHhC-------CHH-HHHHHHHHHHHHHHHhc
Confidence            45789999999999999999       443 88999999999999984

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.89  E-value=2.7e-06  Score=69.96  Aligned_cols=42  Identities=19%  Similarity=0.305  Sum_probs=30.9

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      +...|+.||+|+|..||.+|       |..+++++|+.|||+|+++...
T Consensus         2 ~~d~~~~LPdevL~~If~~L-------~~~~d~~~~s~vck~W~~~~~~   43 (594)
T 2p1m_B            2 QKRIALSFPEEVLEHVFSFI-------QLDKDRNSVSLVCKSWYEIERW   43 (594)
T ss_dssp             --------CHHHHHHHHHTC-------CCHHHHHHHHTSCHHHHHHHHH
T ss_pred             cccchhhCCHHHHHHHHhhc-------CCchhHHHHHHHHHHHHHhhhh
Confidence            34689999999999999999       7678999999999999999433

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.87  E-value=4.4e-06  Score=70.28  Aligned_cols=40  Identities=33%  Similarity=0.628  Sum_probs=35.0

Q ss_pred             CCCCCCCCHHHHHHHHhhhhcccCCCCCcccee-eehhhhhhHHHHHHH
Q 031830           54 SGSWAGLLPELLGEIIRRVETTEDSWPHRQNVV-ACACVCKRWREITKD  101 (152)
Q Consensus        54 ~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VV-aCA~VCR~WR~i~kE  101 (152)
                      ......||+|||.+||.+|       |.+ +++ .|++|||+||.++.+
T Consensus        48 ~~~~~~LP~ell~~Il~~L-------p~~-~L~~r~~~VCk~Wr~l~~~   88 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAEL-------PAT-ELVQACRLVCLRWKELVDG   88 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTS-------CHH-HHHHTGGGTCHHHHHHHTS
T ss_pred             ccChhhCCHHHHHHHHHcC-------CHH-HHHHHHHHHhHHHHHHhcC
Confidence            3467899999999999999       774 788 999999999999754

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=97.37  E-value=4.9e-05  Score=59.79  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=35.2

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      ...-.+.||+|++..||..|..        ++++.|+.|||+|+.++.+
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~--------~~l~~~~~v~~~~~~~~~~   55 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAED   55 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHTC
T ss_pred             cCChhHHCCHHHHHHHHHhCCH--------HHHHHHHHHhHHHHhhcCc
Confidence            4556899999999999999943        6899999999999998753

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.34  E-value=4.3e-05  Score=59.82  Aligned_cols=41  Identities=15%  Similarity=0.289  Sum_probs=35.6

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      +..-.+.||+|++..||..|       |. ++++.|+.|||.|+.++.+
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l-------~~-~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTS-------CH-HHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcC-------CH-HHHHHHHHHHHHHHHHHcC
Confidence            44557889999999999999       44 5999999999999998865

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=97.11  E-value=0.00012  Score=57.87  Aligned_cols=39  Identities=23%  Similarity=0.496  Sum_probs=33.2

Q ss_pred             CCCCCCCHH----HHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           55 GSWAGLLPE----LLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        55 s~WA~LPPE----LL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      .--+.||+|    |+..||..|+.        +++..|+.|||+|+.++.+
T Consensus         9 d~~~~lp~e~~~~~~~~i~~~l~~--------~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A            9 DFITALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             CHHHHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             ChHHHCCcchHHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcC
Confidence            345679999    99999999944        6899999999999988854

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=96.86  E-value=0.00023  Score=58.62  Aligned_cols=37  Identities=14%  Similarity=0.474  Sum_probs=32.8

Q ss_pred             CCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        57 WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      .++||+|+|..|+.+|       +..+++++|+.|||+|+.+..
T Consensus        13 ~~~LPdeil~~I~~~L-------~~~~d~~~~s~vck~W~~~~~   49 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYI-------TDPKDRDSASLVCRRWFKIDS   49 (592)
T ss_dssp             CCCCGGGTHHHHHTTC-------CCHHHHHHHTTSCHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHhc-------CCHHHHHHHHHHhHHHHHhhh
Confidence            4589999999999999       556899999999999999953

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=96.83  E-value=0.00013  Score=62.60  Aligned_cols=38  Identities=13%  Similarity=0.237  Sum_probs=34.1

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      -|.+||.|++..||..|++        +|+..|+.|||.||.++.|
T Consensus         4 ~l~~LP~ei~l~IlsfL~p--------~DL~~l~~vcr~Wr~la~D   41 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSP--------HDLCQLGSTNHYWNETVRD   41 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCH--------HHHHHHHTTCHHHHHHHTC
T ss_pred             hhHhCCHHHHHHHHhcCCH--------HHHHHHHHHHHHHHHHhcc
Confidence            3778999999999999955        6899999999999999876

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1c8za_	265	d.23.1.1 (A:) Transcriptional factor tubby, C-term	1e-06
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	7e-04

>d1c8za_ d.23.1.1 (A:) Transcriptional factor tubby, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 265

class: Alpha and beta proteins (a+b)
fold: Tubby C-terminal domain-like
superfamily: Tubby C-terminal domain-like
family: Transcriptional factor tubby, C-terminal domain
domain: Transcriptional factor tubby, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.2 bits (104), Expect = 1e-06
 Identities = 7/28 (25%), Positives = 13/28 (46%)

Query: 118 LKQPGPREFPHQCLIRRNKKTSTFYLYL 145
             +P P+    +C I R+KK     ++ 
Sbjct: 14  ALRPAPQGITIKCRITRDKKGMDRGMFP 41

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.5 bits (77), Expect = 7e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 8/45 (17%)

Query: 57  WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD 101
           W  L  ELL  I   +   E        ++  + VCKRW  +  D
Sbjct: 1   WDSLPDELLLGIFSCLCLPE--------LLKVSGVCKRWYRLASD 37

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	98.75
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.22
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.09
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.6

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.75  E-value=1.1e-09  Score=66.02  Aligned_cols=36  Identities=31%  Similarity=0.586  Sum_probs=32.9

Q ss_pred             CCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           57 WAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        57 WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      |.+||.|++..||.+|       |. ++++.|+.|||+|++++.
T Consensus         1 f~~LP~eil~~If~~L-------~~-~dl~~~~~Vcr~w~~l~~   36 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCL-------CL-PELLKVSGVCKRWYRLAS   36 (41)
T ss_dssp             CCSSCHHHHHHHHTTS-------CG-GGHHHHHTTCHHHHHHHT
T ss_pred             CCcCCHHHHHHHHHcC-------CH-HHHHHHHHHHHHHHHHhC
Confidence            7899999999999999       43 589999999999999875

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=1.1e-07  Score=63.44  Aligned_cols=41  Identities=22%  Similarity=0.376  Sum_probs=35.0

Q ss_pred             CCCCCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           53 SSGSWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        53 ~~s~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      +..-=+.||+|++..||..|+.        +++++|++|||+|++++.+
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~--------~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEP--------KDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCH--------HHHHHHTTSCHHHHHHHTC
T ss_pred             ccCChhhCCHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHCC
Confidence            3444577999999999999944        6999999999999998864

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.09  E-value=2e-07  Score=62.91  Aligned_cols=37  Identities=16%  Similarity=0.316  Sum_probs=32.4

Q ss_pred             CCCCCCHHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHH
Q 031830           56 SWAGLLPELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITK  100 (152)
Q Consensus        56 ~WA~LPPELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~k  100 (152)
                      -.++||+||+..||..|       +. ++++.|+.|||+|+.++.
T Consensus         5 ~~~~LP~Ell~~I~s~L-------d~-~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           5 LITSLPFEISLKIFNYL-------QF-EDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             HHHHSCHHHHHHHHTTS-------CH-HHHHHHTTTCHHHHHHHH
T ss_pred             chhhCCHHHHHHHHHCC-------CH-HHHHHHHHHHHHHHHHHH
Confidence            35689999999999999       33 699999999999999874

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=7.8e-06  Score=56.05  Aligned_cols=36  Identities=25%  Similarity=0.569  Sum_probs=31.2

Q ss_pred             CCCC----HHHHHHHHhhhhcccCCCCCccceeeehhhhhhHHHHHHH
Q 031830           58 AGLL----PELLGEIIRRVETTEDSWPHRQNVVACACVCKRWREITKD  101 (152)
Q Consensus        58 A~LP----PELL~dIi~RlE~se~~WPaRk~VVaCA~VCR~WR~i~kE  101 (152)
                      ++||    +|++..||..|+.        +++..|+.|||.|++++.+
T Consensus        12 ~~LP~~l~~EI~~~Ils~Ld~--------~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1          12 TALPARGLDHIAENILSYLDA--------KSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             HHTGGGTCHHHHHHHHTTCCH--------HHHHHHHHHCHHHHHHHHH
T ss_pred             HHCCCCChHHHHHHHHHcCCH--------HHHHHHHHHHHHHHHHHcC
Confidence            4566    6999999999955        6999999999999999864