Citrus Sinensis ID: 031837

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
cEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEcccccccEEEEEccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEEcEEEEcccccEEEEEEEEccccccccccccccccccccccccEEEEEEEEEc
ccEEEEEcEcccccccEEEEEEEccccEEEEEEEEccccEEcEEEEEccccccccccccccEcccccccccccccccccccEccccEEccccEEEEEEEEccccccccccccccEEEEEccccccccccccccccccccccEEEEEEcEEcc
MVKAVAVlggtegvkgtvsfsqegdgpttvsgslsglkpgphgfhvhalgdttngcmstgphfnpagkehgapeddnrhagdlgnvnvgddgtaTFTVvdnqiplsgpnsiigravvvhadpddlgkgghelskttgnaggrvacgiiglqg
mvkavavlggtegvkgtvsfsqegdgPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHelskttgnaggrvaCGIIGLQG
MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAgdlgnvnvgddgTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
*********************************************VHA*************************************VNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHAD******************GGRVACGIIG***
MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGK*G*ELS*****AGGRVACGIIGLQG
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query152 2.2.26 [Sep-21-2011]
Q9SQL5152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.868 4e-71
P93258152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.835 8e-71
O65768152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.842 2e-70
P22233152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.848 2e-70
P23345152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.855 3e-70
Q07796152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.848 3e-70
O65174152 Superoxide dismutase [Cu- N/A no 0.993 0.993 0.847 1e-69
Q7M1R5152 Superoxide dismutase [Cu- no no 1.0 1.0 0.842 2e-69
P27082152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.835 2e-69
O49073152 Superoxide dismutase [Cu- N/A no 1.0 1.0 0.842 2e-69
>sp|Q9SQL5|SODC_ANACO Superoxide dismutase [Cu-Zn] OS=Ananas comosus GN=SOD1 PE=2 SV=1 Back     alignment and function desciption
 Score =  266 bits (680), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 132/152 (86%), Positives = 141/152 (92%)

Query: 1   MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLG +EGVKGT+ F+QEGDGPTTV+GS+SGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGSSEGVKGTIYFTQEGDGPTTVTGSISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAG EHGAPED+ RHAGDLGNV VG+DGT    +VD+QIPLSG NSIIGRAVVVHA
Sbjct: 61  PHFNPAGNEHGAPEDETRHAGDLGNVTVGEDGTVNVNIVDSQIPLSGSNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Ananas comosus (taxid: 4615)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|P93258|SODC1_MESCR Superoxide dismutase [Cu-Zn] 1 OS=Mesembryanthemum crystallinum GN=SODCC.1 PE=2 SV=1 Back     alignment and function description
>sp|O65768|SODC_CARPA Superoxide dismutase [Cu-Zn] OS=Carica papaya GN=SODCC PE=2 SV=1 Back     alignment and function description
>sp|P22233|SODC_SPIOL Superoxide dismutase [Cu-Zn] OS=Spinacia oleracea GN=SODCC PE=2 SV=1 Back     alignment and function description
>sp|P23345|SODC4_MAIZE Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2 Back     alignment and function description
>sp|Q07796|SODC_IPOBA Superoxide dismutase [Cu-Zn] OS=Ipomoea batatas GN=SODCC PE=2 SV=2 Back     alignment and function description
>sp|O65174|SODC_ZANAE Superoxide dismutase [Cu-Zn] OS=Zantedeschia aethiopica GN=SODCC PE=2 SV=1 Back     alignment and function description
>sp|Q7M1R5|SODC_SOYBN Superoxide dismutase [Cu-Zn] OS=Glycine max GN=SOD1 PE=3 SV=1 Back     alignment and function description
>sp|P27082|SODC_NICPL Superoxide dismutase [Cu-Zn] OS=Nicotiana plumbaginifolia GN=SODCC PE=2 SV=2 Back     alignment and function description
>sp|O49073|SODC_PAUKA Superoxide dismutase [Cu-Zn] OS=Paulownia kawakamii GN=SODCC PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query152
33340236152 copper/zinc superoxide dismutase [Citrus 1.0 1.0 0.986 1e-78
381141812152 Cu/Zn superoxide dismutase [Tetradium ru 1.0 1.0 0.953 2e-76
295979335152 copper/zinc superoxide dismutase [Melast 1.0 1.0 0.894 1e-71
255542450152 cu/zn superoxide dismutase, putative [Ri 1.0 1.0 0.888 2e-71
224125448152 predicted protein [Populus trichocarpa] 1.0 1.0 0.875 2e-71
164654158152 copper/zinc-superoxide dismutase [Litchi 0.993 0.993 0.874 3e-71
13274150152 putative cytosolic CuZn-superoxide dismu 1.0 1.0 0.868 5e-71
440573546152 copper/zinc superoxide dismutase [Musa a 1.0 1.0 0.888 5e-71
74229677152 cytoplasmic Cu/ZnSOD [Gossypium hirsutum 1.0 1.0 0.888 5e-71
49615353152 superoxide dismutase [Malus xiaojinensis 1.0 1.0 0.881 9e-71
>gi|33340236|gb|AAQ14591.1| copper/zinc superoxide dismutase [Citrus limon] Back     alignment and taxonomy information
 Score =  296 bits (759), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 150/152 (98%), Positives = 151/152 (99%)

Query: 1   MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
           MVKAVAVLGGTEGVKGTVSF+QEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLGGTEGVKGTVSFTQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKEHGAPEDDNRHAGDLGNVNV DDGTATFTVVDNQIPLSGPNSIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGAPEDDNRHAGDLGNVNVSDDGTATFTVVDNQIPLSGPNSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|381141812|gb|AFF57842.1| Cu/Zn superoxide dismutase [Tetradium ruticarpum] Back     alignment and taxonomy information
>gi|295979335|dbj|BAJ07302.1| copper/zinc superoxide dismutase [Melastoma malabathricum] Back     alignment and taxonomy information
>gi|255542450|ref|XP_002512288.1| cu/zn superoxide dismutase, putative [Ricinus communis] gi|223548249|gb|EEF49740.1| cu/zn superoxide dismutase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224125448|ref|XP_002319589.1| predicted protein [Populus trichocarpa] gi|118488274|gb|ABK95956.1| unknown [Populus trichocarpa] gi|222857965|gb|EEE95512.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|164654158|gb|ABY65355.1| copper/zinc-superoxide dismutase [Litchi chinensis] gi|436805717|gb|AGB58021.1| copper/zinc-superoxide dismutase [Litchi chinensis] Back     alignment and taxonomy information
>gi|13274150|emb|CAC33845.1| putative cytosolic CuZn-superoxide dismutase [Populus tremula x Populus tremuloides] gi|52313438|dbj|BAD51399.1| CuZn-superoxide dismutase [Populus alba x Populus tremula var. glandulosa] gi|52313440|dbj|BAD51400.1| CuZn-superoxide dismutase [Populus alba x Populus tremula var. glandulosa] Back     alignment and taxonomy information
>gi|440573546|gb|AGC13157.1| copper/zinc superoxide dismutase [Musa acuminata AAA Group] Back     alignment and taxonomy information
>gi|74229677|gb|ABA00453.1| cytoplasmic Cu/ZnSOD [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|49615353|gb|AAT66935.1| superoxide dismutase [Malus xiaojinensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query152
UNIPROTKB|Q0DRV6152 SODCC1 "Superoxide dismutase [ 1.0 1.0 0.789 8.8e-63
UNIPROTKB|P28757152 SODCC2 "Superoxide dismutase [ 1.0 1.0 0.782 3e-62
TAIR|locus:2025595152 CSD1 "copper/zinc superoxide d 1.0 1.0 0.769 9e-61
TAIR|locus:2046168216 CSD2 "copper/zinc superoxide d 0.973 0.685 0.641 1.5e-49
UNIPROTKB|P93407211 SODCP "Superoxide dismutase [C 0.973 0.701 0.621 2.6e-47
TAIR|locus:2172324164 CSD3 "AT5G18100" [Arabidopsis 0.986 0.914 0.58 1.6e-45
UNIPROTKB|Q0DTX5162 Os03g0219200 "Superoxide dismu 0.986 0.925 0.584 6.4e-44
FB|FBgn0003462153 Sod "Superoxide dismutase" [Dr 0.973 0.967 0.582 2.8e-43
ZFIN|ZDB-GENE-990415-258154 sod1 "superoxide dismutase 1, 0.973 0.961 0.550 4.2e-40
UNIPROTKB|Q8HXP8154 SOD1 "Superoxide dismutase [Cu 0.980 0.967 0.54 6.8e-40
UNIPROTKB|Q0DRV6 SODCC1 "Superoxide dismutase [Cu-Zn] 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
 Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
 Identities = 120/152 (78%), Positives = 129/152 (84%)

Query:     1 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
             MVKAV VLG +E VKGT+ F QEGDGPTTV+GS+SGLKPG HGFH+HALGDTTNGCMSTG
Sbjct:     1 MVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMSTG 60

Query:    61 PHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
             PH+NPAGKEHGAPED+ RHA             A   VVD+QIPL+GPNSIIGRAVVVHA
Sbjct:    61 PHYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHA 120

Query:   121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
             DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG
Sbjct:   121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
GO:0004784 "superoxide dismutase activity" evidence=IBA
GO:0005507 "copper ion binding" evidence=IBA
GO:0008270 "zinc ion binding" evidence=IBA
GO:0019430 "removal of superoxide radicals" evidence=IBA
UNIPROTKB|P28757 SODCC2 "Superoxide dismutase [Cu-Zn] 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2025595 CSD1 "copper/zinc superoxide dismutase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2046168 CSD2 "copper/zinc superoxide dismutase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P93407 SODCP "Superoxide dismutase [Cu-Zn], chloroplastic" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2172324 CSD3 "AT5G18100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q0DTX5 Os03g0219200 "Superoxide dismutase [Cu-Zn]" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
FB|FBgn0003462 Sod "Superoxide dismutase" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-990415-258 sod1 "superoxide dismutase 1, soluble" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP8 SOD1 "Superoxide dismutase [Cu-Zn]" [Callithrix jacchus (taxid:9483)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9U4X3SODC_DROYA1, ., 1, 5, ., 1, ., 10.62250.97360.9673N/Ano
O04996SODC_SOLCS1, ., 1, 5, ., 1, ., 10.83661.00.9934N/Ano
Q9U4X5SODC_DROOR1, ., 1, 5, ., 1, ., 10.62250.97360.9673N/Ano
P28757SODC2_ORYSJ1, ., 1, 5, ., 1, ., 10.83551.01.0nono
P24707SODCP_PINSY1, ., 1, 5, ., 1, ., 10.71530.90130.9716N/Ano
P24704SODC1_ARATH1, ., 1, 5, ., 1, ., 10.83551.01.0yesno
O22373SODC_CAPAN1, ., 1, 5, ., 1, ., 10.82891.01.0N/Ano
P14830SODC1_SOLLC1, ., 1, 5, ., 1, ., 10.81571.01.0N/Ano
Q42612SODC2_BRAJU1, ., 1, 5, ., 1, ., 10.82891.01.0N/Ano
Q02610SODC_PEA1, ., 1, 5, ., 1, ., 10.82891.01.0N/Ano
P22233SODC_SPIOL1, ., 1, 5, ., 1, ., 10.84861.01.0N/Ano
Q42611SODC1_BRAJU1, ., 1, 5, ., 1, ., 10.82231.01.0N/Ano
P23346SODC5_MAIZE1, ., 1, 5, ., 1, ., 10.84211.01.0N/Ano
P41973SODC_DROWI1, ., 1, 5, ., 1, ., 10.63570.97360.9673N/Ano
P23345SODC4_MAIZE1, ., 1, 5, ., 1, ., 10.85521.01.0N/Ano
P61852SODC_DROSI1, ., 1, 5, ., 1, ., 10.62250.97360.9673N/Ano
P10791SODC_DROVI1, ., 1, 5, ., 1, ., 10.64900.97360.9673N/Ano
O22668SODC_PANGI1, ., 1, 5, ., 1, ., 10.80261.01.0N/Ano
P07505SODCP_SPIOL1, ., 1, 5, ., 1, ., 10.70940.97360.6666N/Ano
Q9SQL5SODC_ANACO1, ., 1, 5, ., 1, ., 10.86841.01.0N/Ano
O49073SODC_PAUKA1, ., 1, 5, ., 1, ., 10.84211.01.0N/Ano
P93258SODC1_MESCR1, ., 1, 5, ., 1, ., 10.83551.01.0N/Ano
P11428SODC2_MAIZE1, ., 1, 5, ., 1, ., 10.83550.99341.0N/Ano
P27082SODC_NICPL1, ., 1, 5, ., 1, ., 10.83551.01.0N/Ano
O65768SODC_CARPA1, ., 1, 5, ., 1, ., 10.84211.01.0N/Ano
P54407SODC_DROBS1, ., 1, 5, ., 1, ., 10.66420.89470.9379N/Ano
Q8L5E0ALL5B_OLEEU1, ., 1, 5, ., 1, ., 10.82891.01.0N/Ano
A2XGP6SODC1_ORYSI1, ., 1, 5, ., 1, ., 10.84861.01.0N/Ano
Q43779SODC2_SOLLC1, ., 1, 5, ., 1, ., 10.81571.01.0N/Ano
Q01137SODC_SCHMA1, ., 1, 5, ., 1, ., 10.640.98020.9738N/Ano
Q07182SODC_CHYAM1, ., 1, 5, ., 1, ., 10.61580.97360.9673N/Ano
P09678SODC_BRAOC1, ., 1, 5, ., 1, ., 10.80921.01.0N/Ano
O49044SODC2_MESCR1, ., 1, 5, ., 1, ., 10.68870.99340.9679N/Ano
Q07796SODC_IPOBA1, ., 1, 5, ., 1, ., 10.84861.01.0N/Ano
Q0DRV6SODC1_ORYSJ1, ., 1, 5, ., 1, ., 10.84861.01.0yesno
O65174SODC_ZANAE1, ., 1, 5, ., 1, ., 10.84760.99340.9934N/Ano
Q95086SODC_DROPS1, ., 1, 5, ., 1, ., 10.62250.97360.9736yesno
P11418SODC_PRIGL1, ., 1, 5, ., 1, ., 10.61070.98020.9802N/Ano
P24669SODC_PINSY1, ., 1, 5, ., 1, ., 10.79601.00.9870N/Ano
Q7M1R5SODC_SOYBN1, ., 1, 5, ., 1, ., 10.84211.01.0nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.994
3rd Layer1.15.10.998

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_Genewise1_v1.C_LG_XIII1233
RecName- Full=Superoxide dismutase [Cu-Zn]; EC=1.15.1.1;; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) (153 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
PLN02386152 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] 7e-85
cd00305144 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc s 2e-60
pfam00080140 pfam00080, Sod_Cu, Copper/zinc superoxide dismutas 7e-60
PLN02642164 PLN02642, PLN02642, copper, zinc superoxide dismut 9e-56
COG2032179 COG2032, SodC, Cu/Zn superoxide dismutase [Inorgan 4e-36
PLN02957238 PLN02957, PLN02957, copper, zinc superoxide dismut 5e-17
PRK10290173 PRK10290, PRK10290, superoxide dismutase; Provisio 4e-09
PRK15388177 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Pr 8e-09
>gnl|CDD|166027 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] Back     alignment and domain information 
 Score =  245 bits (626), Expect = 7e-85
 Identities = 137/152 (90%), Positives = 146/152 (96%)

Query: 1   MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
           MVKAVAVL  +EGVKGT+ F+QEGDGPTTV+GSLSGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MVKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKEHGAPED+NRHAGDLGNV VGDDGTATFT+VD QIPL+GPNSI+GRAVVVHA
Sbjct: 61  PHFNPAGKEHGAPEDENRHAGDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSK+TGNAGGRVACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRVACGIIGLQG 152

Length = 152
>gnl|CDD|238186 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>gnl|CDD|215700 pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC) Back     alignment and domain information
>gnl|CDD|178248 PLN02642, PLN02642, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|224943 COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|182357 PRK10290, PRK10290, superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|185286 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 152
PLN02386152 superoxide dismutase [Cu-Zn] 100.0
PLN02642164 copper, zinc superoxide dismutase 100.0
KOG0441154 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Ino 100.0
PRK15388177 Cu/Zn superoxide dismutase; Provisional 100.0
cd00305144 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide 100.0
PF00080142 Sod_Cu: Copper/zinc superoxide dismutase (SODC); I 100.0
PRK10290173 superoxide dismutase; Provisional 100.0
COG2032179 SodC Cu/Zn superoxide dismutase [Inorganic ion tra 100.0
PLN02957238 copper, zinc superoxide dismutase 100.0
KOG4656247 consensus Copper chaperone for superoxide dismutas 100.0
smart00754118 CHRD A domain in the BMP inhibitor chordin and in 84.23
>PLN02386 superoxide dismutase [Cu-Zn] Back     alignment and domain information 
Probab=100.00  E-value=2e-54  Score=321.91  Aligned_cols=152  Identities=90%  Similarity=1.440  Sum_probs=146.1

Q ss_pred             CeEEEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 031837            1 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHA   80 (152)
Q Consensus         1 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~   80 (152)
                      |++|+|+|++...++|+|+|+|.+++.++|+++|+||+||.|+|||||+|+|+++|+|||+||||.+..|+.|++..+|+
T Consensus         1 ~~~a~a~~~~~~~v~G~v~f~q~~~g~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H~   80 (152)
T PLN02386          1 MVKAVAVLNSSEGVKGTIFFTQEGDGPTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRHA   80 (152)
T ss_pred             CceEEEEEcCCCCCEEEEEEEEcCCCCEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCcc
Confidence            67899999988889999999998777799999999999999999999999999999999999999999999999889999


Q ss_pred             CCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEecC
Q 031837           81 GDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQG  152 (152)
Q Consensus        81 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~~  152 (152)
                      ||||||.++++|.+++.+++++++|.++++|+|||||||+.+|||++++++.|+++|++|+|||||||++++
T Consensus        81 GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~~~~~~s~~~G~aG~RiACgvI~~~~  152 (152)
T PLN02386         81 GDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGKGGHELSKSTGNAGGRVACGIIGLQG  152 (152)
T ss_pred             ccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCCCcccccccCCCCCceEEEEEEEecC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999874

>PLN02642 copper, zinc superoxide dismutase Back     alignment and domain information
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15388 Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide [] Back     alignment and domain information
>PRK10290 superoxide dismutase; Provisional Back     alignment and domain information
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
2q2l_A152 Crystal Structure Of Superoxide Dismutase From P. A 3e-63
1srd_A154 Three-Dimensional Structure Of Cu,Zn-Superoxide Dis 2e-51
3km1_A154 Zinc-Reconstituted Tomato Chloroplast Superoxide Di 8e-48
1to4_A156 Structure Of The Cytosolic Cu,Zn Sod From S. Manson 6e-44
3f7k_A152 X-Ray Crystal Structure Of An Alvinella Pompejana C 1e-42
3mnd_A152 Crystallographic Analysis Of The Cystosolic CuZN SU 4e-42
1xso_A150 Three-Dimensional Structure Of Xenopus Laevis Cu,Zn 3e-39
3l9e_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 4e-39
3l9y_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 2e-38
1e9q_B151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 1e-37
1e9o_B152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 1e-37
3sod_O152 Changes In Crystallographic Structure And Thermosta 2e-37
1cb4_A151 Crystal Structure Of Copper, Zinc Superoxide Dismut 2e-37
1n18_A154 Thermostable Mutant Of Human Superoxide Dismutase, 4e-37
1sos_A154 Atomic Structures Of Wild-type And Thermostable Mut 4e-37
1l3n_A153 The Solution Structure Of Reduced Dimeric Copper Zi 4e-37
1fun_A153 Superoxide Dismutase Mutant With Lys 136 Replaced B 4e-37
2e46_A157 Crystal Structure Analysis Of The Clock Protein Ea4 5e-37
1q0e_A152 Atomic Resolution (1.15 ) Crystal Structure Of Bovi 5e-37
1cob_A151 Crystal Structure Solution And Refinement Of The Se 5e-37
1sda_O152 Crystal Structure Of Peroxynitrite-Modified Bovine 6e-37
2e47_A156 Crystal Structure Analysis Of The Clock Protein Ea4 6e-37
1e9p_B151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 7e-37
3gtv_A153 Human-Mouse Sod1 Chimera Length = 153 8e-37
2gbt_A153 C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 9e-37
3gtt_A153 Mouse Sod1 Length = 153 9e-37
1n19_A154 Structure Of The Hsod A4v Mutant Length = 154 1e-36
1e9o_A152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 1e-36
1e9q_A151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 1e-36
1ptz_A153 Crystal Structure Of The Human Cu, Zn Superoxide Di 2e-36
2r27_A154 Constitutively Zinc-Deficient Mutant Of Human Super 2e-36
1e9p_A151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 2e-36
2vr8_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 2e-36
3cqq_A153 Human Sod1 G85r Variant, Structure Ii Length = 153 2e-36
3gzp_A153 Human Sod1 G93a Metal-Free Variant Length = 153 2e-36
3gzo_A154 Human Sod1 G93a Variant Length = 154 2e-36
2wko_F154 Structure Of Metal Loaded Pathogenic Sod1 Mutant G9 2e-36
2vr7_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 3e-36
2vr6_A153 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 3e-36
2zky_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 3e-36
2zkw_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 3e-36
1mfm_A153 Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC 3e-36
2c9s_A153 1.24 Angstroms Resolution Structure Of Zn-Zn Human 4e-36
4b3e_A154 Structure Of Copper-Zinc Superoxide Dismutase Compl 4e-36
1hl4_A154 The Structure Of Apo Type Human Cu, Zn Superoxide D 4e-36
1hl5_A153 The Structure Of Holo Type Human Cu, Zn Superoxide 4e-36
3ltv_A153 Mouse-Human Sod1 Chimera Length = 153 4e-36
1ba9_A153 The Solution Structure Of Reduced Monomeric Superox 4e-36
2xjk_A153 Monomeric Human Cu,Zn Superoxide Dismutase Length = 9e-36
1ozu_A153 Crystal Structure Of Familial Als Mutant S134n Of H 9e-36
2wyz_A153 L38v Sod1 Mutant Complexed With Ump Length = 153 1e-35
2wyt_A153 1.0 A Resolution Structure Of L38v Sod1 Mutant Leng 1e-35
1uxm_A153 A4v Mutant Of Human Sod1 Length = 153 1e-35
3gzq_A154 Human Sod1 A4v Metal-Free Variant Length = 154 1e-35
3ecw_A153 Crystal Structure Of The Als-Related Pathological M 1e-35
1uxl_A153 I113t Mutant Of Human Sod1 Length = 153 2e-35
1azv_A153 Familial Als Mutant G37r Cuznsod (Human) Length = 1 2e-35
1oez_W153 Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismu 2e-35
3h2q_A153 Human Sod1 H80r Variant, P21 Crystal Form Length = 2e-35
3qqd_A154 Human Sod1 H80r Variant, P212121 Crystal Form Lengt 2e-35
1p1v_A153 Crystal Structure Of Fals-Associated Human Copper-Z 3e-35
1dsw_A153 The Solution Structure Of A Monomeric, Reduced Form 4e-35
3h2p_A153 Human Sod1 D124v Variant Length = 153 4e-35
4a7g_A153 Structure Of Human I113t Sod1 Mutant Complexed With 4e-35
1f18_A154 Crystal Structure Of Yeast Copper-Zinc Superoxide D 6e-35
4bcy_A153 Monomeric Human Cu,zn Superoxide Dismutase, Mutatio 7e-35
2gbu_A153 C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase 9e-35
1f1g_A154 Crystal Structure Of Yeast Cuznsod Exposed To Nitri 9e-35
3gqf_A153 Structural And Biophysical Properties Of The Pathog 1e-34
2nnx_A154 Crystal Structure Of The H46r, H48q Double Mutant O 1e-34
1f1a_A154 Crystal Structure Of Yeast H48q Cuznsod Fals Mutant 5e-34
1sdy_A153 Structure Solution And Molecular Dynamics Refinemen 6e-34
1f1d_A154 Crystal Structure Of Yeast H46c Cuznsod Mutant Leng 1e-33
3kbe_A157 Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Le 4e-33
1jk9_A153 Heterodimer Between H48f-Ysod1 And Yccs Length = 15 4e-33
3hff_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 4e-33
2xjl_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 5e-33
1b4t_A153 H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPE 8e-33
3ce1_A168 Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE 2e-32
1do5_A154 Human Copper Chaperone For Superoxide Dismutase Dom 2e-30
2jlp_A222 Crystal Structure Of Human Extracellular Copper-Zin 1e-16
4bcz_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 2e-10
4bd4_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 2e-09
1oal_A151 Active Site Copper And Zinc Ions Modulate The Quate 5e-07
1bzo_A151 Three-Dimensional Structure Of Prokaryotic Cu,Zn Su 6e-07
1yai_A151 X-Ray Structure Of A Bacterial Copper,Zinc Superoxi 7e-07
1oaj_A151 Active Site Copper And Zinc Ions Modulate The Quate 7e-07
1ibd_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 7e-07
1ibh_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 7e-07
1ib5_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 8e-07
1ibb_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 1e-06
1ibf_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 1e-06
2aqs_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 1e-04
2aqt_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 2e-04
2aqn_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 2e-04
2aqr_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 2e-04
2aqq_A164 CuZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDI 2e-04
2aqp_A164 CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITID 2e-04
1xtm_B175 Crystal Structure Of The Double Mutant Y88h-p104h O 3e-04
1xtl_B175 Crystal Structure Of P104h Mutant Of Sod-Like Prote 8e-04
>pdb|2Q2L|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Atrosanguina Length = 152 Back     alignment and structure 
Iteration: 1

 Score =  236 bits (603), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 117/152 (76%), Positives = 130/152 (85%)
Query: 1   MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
           M K VAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTG 60
Query: 61  PHFNPAGKEHGAPEDDNRHAXXXXXXXXXXXXTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKEHG+PED+ RHA            TA FT+VD QIPL+GP+SIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHA 120
Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152
>pdb|1SRD|A Chain A, Three-Dimensional Structure Of Cu,Zn-Superoxide Dismutase From Spinach At 2.0 Angstroms Resolution Length = 154 Back     alignment and structure
>pdb|3KM1|A Chain A, Zinc-Reconstituted Tomato Chloroplast Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1TO4|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni Length = 156 Back     alignment and structure
>pdb|3F7K|A Chain A, X-Ray Crystal Structure Of An Alvinella Pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex Length = 152 Back     alignment and structure
>pdb|3MND|A Chain A, Crystallographic Analysis Of The Cystosolic CuZN SUPEROXIDE DISMUTASE From Taenia Solium Length = 152 Back     alignment and structure
>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography At 1.5 Angstroms Resolution Length = 150 Back     alignment and structure
>pdb|3L9E|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM THE SILKWORM Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|3L9Y|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM The Silkworm Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|3SOD|O Chain O, Changes In Crystallographic Structure And Thermostability Of A Cu,Zn Superoxide Dismutase Mutant Resulting From The Removal Of Buried Cysteine Length = 152 Back     alignment and structure
>pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a, C111s Length = 154 Back     alignment and structure
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc Sod: The Structural Effects Of Dimerization Length = 153 Back     alignment and structure
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e, C6a, C111s) Length = 153 Back     alignment and structure
>pdb|2E46|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 Length = 157 Back     alignment and structure
>pdb|1Q0E|A Chain A, Atomic Resolution (1.15 ) Crystal Structure Of Bovine Copper, Zinc Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|1COB|A Chain A, Crystal Structure Solution And Refinement Of The Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase At 2.0 Angstroms Resolution Length = 151 Back     alignment and structure
>pdb|1SDA|O Chain O, Crystal Structure Of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|2E47|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 (Glycosylation Form) Length = 156 Back     alignment and structure
>pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 Back     alignment and structure
>pdb|3GTT|A Chain A, Mouse Sod1 Length = 153 Back     alignment and structure
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant Length = 154 Back     alignment and structure
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide Dismutase, Familial Amyotrophic Lateral Sclerosis (Fals) Mutant H43r Length = 153 Back     alignment and structure
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide Dismutase (Sod), C6a, H80s, H83s, C111s Length = 154 Back     alignment and structure
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.36 A Resolution Length = 154 Back     alignment and structure
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii Length = 153 Back     alignment and structure
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant Length = 153 Back     alignment and structure
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant Length = 154 Back     alignment and structure
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a Length = 154 Back     alignment and structure
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.58 A Resolution Length = 154 Back     alignment and structure
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.3 A Resolution Length = 153 Back     alignment and structure
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G93a Length = 159 Back     alignment and structure
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G85r In Space Group P21 Length = 159 Back     alignment and structure
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC Resolution Length = 153 Back     alignment and structure
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed With Bicarbonate. Length = 154 Back     alignment and structure
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide Dismutase, Nmr, 36 Structures Length = 153 Back     alignment and structure
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution Length = 153 Back     alignment and structure
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump Length = 153 Back     alignment and structure
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant Length = 153 Back     alignment and structure
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant Length = 154 Back     alignment and structure
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1) Length = 153 Back     alignment and structure
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human) Length = 153 Back     alignment and structure
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form Length = 153 Back     alignment and structure
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form Length = 154 Back     alignment and structure
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a Length = 153 Back     alignment and structure
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of Human Copper, Zinc Superoxide Dismutase Bearing The Same Charge As The Native Protein Length = 153 Back     alignment and structure
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant Length = 153 Back     alignment and structure
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4- Methylpiperazin-1-Yl)quinazoline In The P21 Space Group Length = 153 Back     alignment and structure
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide Dismutase Mutant Gly85arg Length = 154 Back     alignment and structure
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation H43f Length = 153 Back     alignment and structure
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1F1G|A Chain A, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide Length = 154 Back     alignment and structure
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic Sod1 Variant H46rH48Q Length = 153 Back     alignment and structure
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of Human [cu-Zn] Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog Length = 154 Back     alignment and structure
>pdb|1SDY|A Chain A, Structure Solution And Molecular Dynamics Refinement Of The Yeast Cu,Zn Enzyme Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1F1D|A Chain A, Crystal Structure Of Yeast H46c Cuznsod Mutant Length = 154 Back     alignment and structure
>pdb|3KBE|A Chain A, Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Length = 157 Back     alignment and structure
>pdb|1JK9|A Chain A, Heterodimer Between H48f-Ysod1 And Yccs Length = 153 Back     alignment and structure
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn Ligands Length = 153 Back     alignment and structure
>pdb|2XJL|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Cu Ligands Length = 153 Back     alignment and structure
>pdb|1B4T|A Chain A, H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298k) Structure Length = 153 Back     alignment and structure
>pdb|3CE1|A Chain A, Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE FROM Cryptococcus Liquefaciens Strain N6 Length = 168 Back     alignment and structure
>pdb|1DO5|A Chain A, Human Copper Chaperone For Superoxide Dismutase Domain Ii Length = 154 Back     alignment and structure
>pdb|2JLP|A Chain A, Crystal Structure Of Human Extracellular Copper-Zinc Superoxide Dismutase. Length = 222 Back     alignment and structure
>pdb|4BCZ|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form. Length = 110 Back     alignment and structure
>pdb|4BD4|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form, Mutant H43f Length = 110 Back     alignment and structure
>pdb|1OAL|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1BZO|A Chain A, Three-Dimensional Structure Of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography Length = 151 Back     alignment and structure
>pdb|1YAI|A Chain A, X-Ray Structure Of A Bacterial Copper,Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1OAJ|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1IBD|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29a Length = 151 Back     alignment and structure
>pdb|1IBH|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant M41i Length = 151 Back     alignment and structure
>pdb|1IB5|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83y Length = 151 Back     alignment and structure
>pdb|1IBB|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83f Length = 151 Back     alignment and structure
>pdb|1IBF|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29g Length = 151 Back     alignment and structure
>pdb|2AQS|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91E, K94e Double Mutant Length = 164 Back     alignment and structure
>pdb|2AQT|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91Q, K94q Double Mutant Length = 164 Back     alignment and structure
>pdb|2AQN|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS Length = 164 Back     alignment and structure
>pdb|2AQR|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS K91Q Mutant Length = 164 Back     alignment and structure
>pdb|2AQQ|A Chain A, CuZN SUPEROXID DISMUTATE FROM NEISSERIA MENINGITIDIS K91E MUTANT Length = 164 Back     alignment and structure
>pdb|2AQP|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM NEISSERIA MENINGITIDIS E73A MUTANT Length = 164 Back     alignment and structure
>pdb|1XTM|B Chain B, Crystal Structure Of The Double Mutant Y88h-p104h Of A Sod-like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|1XTL|B Chain B, Crystal Structure Of P104h Mutant Of Sod-Like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query152
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 2e-78
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 2e-74
1do5_A154 Human copper chaperone for superoxide dismutase do 6e-74
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 8e-74
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 2e-73
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 1e-72
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 2e-72
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 3e-71
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 4e-71
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 4e-70
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 4e-68
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 4e-68
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 2e-60
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 9e-58
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 8e-57
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 2e-56
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 3e-56
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 5e-56
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 2e-54
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 4e-54
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 8e-53
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 9e-43
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 2e-39
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 7e-39
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Length = 152 Back     alignment and structure
 Score =  228 bits (583), Expect = 2e-78
 Identities = 127/152 (83%), Positives = 141/152 (92%)

Query: 1   MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
           M K VAVL  +EGV GT+ F+QEGDGPTTV+G++SGLKPG HGFHVHALGDTTNGCMSTG
Sbjct: 1   MAKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTG 60

Query: 61  PHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
           PHFNPAGKEHG+PED+ RHAGDLGN+ VGDDGTA FT+VD QIPL+GP+SIIGRAVVVHA
Sbjct: 61  PHFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHA 120

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGLQG 152
           DPDDLGKGGHELSK+TGNAGGR+ACGIIGLQG
Sbjct: 121 DPDDLGKGGHELSKSTGNAGGRIACGIIGLQG 152
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 1srd_A Length = 154 Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Length = 154 Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Length = 156 Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Length = 150 Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Length = 156 Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A Length = 152 Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Length = 153 Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Length = 154 Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Length = 168 Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A Length = 154 Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} PDB: 3kbf_A Length = 157 Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Length = 175 Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Length = 154 Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Length = 154 Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Length = 208 Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Length = 156 Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Length = 151 Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Length = 177 Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Length = 164 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Length = 222 Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Length = 140 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query152
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 100.0
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 100.0
4a7u_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, amyo 100.0
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 100.0
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 100.0
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 100.0
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 100.0
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 100.0
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 100.0
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 100.0
1do5_A154 Human copper chaperone for superoxide dismutase do 100.0
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 100.0
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 100.0
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 100.0
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 100.0
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 100.0
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 100.0
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 100.0
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 100.0
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 100.0
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 100.0
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 100.0
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 100.0
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Back     alignment and structure
Probab=100.00  E-value=7.6e-57  Score=334.07  Aligned_cols=151  Identities=83%  Similarity=1.389  Sum_probs=146.6

Q ss_pred             CeEEEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCC
Q 031837            1 MVKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHA   80 (152)
Q Consensus         1 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~   80 (152)
                      |.+|+|+|++.++++|+|+|+|.+++.|.|+++|+||+||.|+|||||+|||+++|.|||+||||+++.|+.|++..||+
T Consensus         1 ~~~Ava~l~g~~~v~G~v~f~q~~~g~v~v~~~i~GL~pG~hg~HIHe~Gd~~~gc~SaG~HfnP~~~~hg~p~~~~~h~   80 (152)
T 2q2l_A            1 MAKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGSPEDETRHA   80 (152)
T ss_dssp             CEEEEEECBCSSSCEEEEEEEESTTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGGCSBCCTTCCCCCCTTSSSCCT
T ss_pred             CceEEEEEeCCCccEEEEEEEEcCCCcEEEEEEECCCCCcceeEEEeecCccCCCcccccCccCCCCCCCCCCCcCCCcC
Confidence            89999999998899999999998766799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEec
Q 031837           81 GDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ  151 (152)
Q Consensus        81 GDLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~  151 (152)
                      ||||||+++++|.+++.|++.+|+|+++++|+|||||||+.+|||++++++.|+++|++|+|||||||+++
T Consensus        81 GDLgni~~~~~G~a~~~~~d~~i~l~g~~siiGRslVIH~~~Dd~g~g~~~~s~~tGnaG~RiACGvI~~~  151 (152)
T 2q2l_A           81 GDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHADPDDLGKGGHELSKSTGNAGGRIACGIIGLQ  151 (152)
T ss_dssp             TEEEEEEECTTSCEEEEEEESSCCSSSTTCCTTSEEEEESSCCCTTCSCSTTTTTTTTCCCEEEEEECEEC
T ss_pred             CcccCeEECCCCcEEEEEEccceecCCCCccCCCEEEEeecCccccccccccccccCCCCCcEEEEEEEEc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999986
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A Back     alignment and structure
>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ... Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 152
d1to4a_156 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bloo 9e-53
d2c9va1153 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD 9e-53
d1srda_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spin 4e-52
d1f1ga_153 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bake 1e-50
d1xsoa_150 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Afri 2e-50
d1do5a_154 b.1.8.1 (A:) Copper chaperone for superoxide dismu 6e-50
d2apsa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Acti 3e-38
d1eqwa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salm 7e-38
d1esoa_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Esch 1e-36
d1oala_151 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Phot 3e-36
d1pzsa_171 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Myco 1e-35
d1ej8a_140 b.1.8.1 (A:) Copper chaperone for superoxide dismu 2e-35
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Length = 156 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

 Score =  162 bits (411), Expect = 9e-53
 Identities = 95/150 (63%), Positives = 110/150 (73%), Gaps = 1/150 (0%)

Query: 2   VKAVAVLGGTEGVKGTVSFSQEGD-GPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTG 60
           +KAV V+ GT GVKG V F+QE D GP  V    SGLK G HGFHVH  GDTTNGC S G
Sbjct: 4   MKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTSAG 63

Query: 61  PHFNPAGKEHGAPEDDNRHAGDLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHA 120
            HFNP  +EHGAPED  RH GDLGNV  G DG A +   D  I L+G +SIIGR++V+H 
Sbjct: 64  AHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVIHE 123

Query: 121 DPDDLGKGGHELSKTTGNAGGRVACGIIGL 150
           + DDLG+GGHELSK TGNAGGR+ACG++GL
Sbjct: 124 NEDDLGRGGHELSKVTGNAGGRLACGVVGL 153
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 154 Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 150 Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Length = 155 Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Length = 155 Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Length = 154 Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Length = 151 Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query152
d1srda_154 Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia 100.0
d1to4a_156 Cu,Zn superoxide dismutase, SOD {Blood fluke (Schi 100.0
d2c9va1153 Cu,Zn superoxide dismutase, SOD {Human (Homo sapie 100.0
d1f1ga_153 Cu,Zn superoxide dismutase, SOD {Baker's yeast (Sa 100.0
d1xsoa_150 Cu,Zn superoxide dismutase, SOD {African clawed fr 100.0
d1do5a_154 Copper chaperone for superoxide dismutase, C-termi 100.0
d2apsa_155 Cu,Zn superoxide dismutase, SOD {Actinobacillus pl 100.0
d1oala_151 Cu,Zn superoxide dismutase, SOD {Photobacterium le 100.0
d1eqwa_155 Cu,Zn superoxide dismutase, SOD {Salmonella typhim 100.0
d1esoa_154 Cu,Zn superoxide dismutase, SOD {Escherichia coli 100.0
d1pzsa_171 Cu,Zn superoxide dismutase, SOD {Mycobacterium tub 100.0
d1ej8a_140 Copper chaperone for superoxide dismutase, C-termi 100.0
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=1.9e-54  Score=320.21  Aligned_cols=150  Identities=70%  Similarity=1.165  Sum_probs=145.3

Q ss_pred             eEEEEEeCCCCCeEEEEEEEEcCCCCeEEEEEEecCCCCceeEEEcccCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCC
Q 031837            2 VKAVAVLGGTEGVKGTVSFSQEGDGPTTVSGSLSGLKPGPHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDDNRHAG   81 (152)
Q Consensus         2 ~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~h~~HIHe~g~~~~~c~saG~hfnp~~~~~~~p~~~~~~~G   81 (152)
                      ++|||+|++.++++|+|+|+|.+++.|+|+++|+||+||.|+|||||+|+|+++|.++|+||||.+..|+.|+...+|+|
T Consensus         3 ~~Ava~~~g~~~v~G~v~f~q~~~g~v~v~v~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h~G   82 (154)
T d1srda_           3 KKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRHAG   82 (154)
T ss_dssp             EEEEEECBCSSSCCCEEEEEEETTSCEEEEEEEESCCSEECCEEEESCCCCTTGGGGGCSBCCTTCCCCCCSSCSSCCSS
T ss_pred             cEEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEecCCCCceeEEEecCCccCCCccccccccccccccccCCCccccccc
Confidence            68999999988999999999998777999999999999999999999999999999999999999999999998899999


Q ss_pred             CCCceEECCCCeEEEEEEecceeecCCCCCCCcEEEEeeCCCCCCCCCCCCcccCCCCCCeEEEEEEEec
Q 031837           82 DLGNVNVGDDGTATFTVVDNQIPLSGPNSIIGRAVVVHADPDDLGKGGHELSKTTGNAGGRVACGIIGLQ  151 (152)
Q Consensus        82 DLg~i~~~~~G~~~~~~~~~~l~l~g~~~iiGRSiVIH~~~dd~~~~~~~~s~~~G~~G~RlACgvI~~~  151 (152)
                      ||+||+++++|.+++.|++++|+|+++++|+|||||||+.+|||++++++.|+++|++|+|||||||+++
T Consensus        83 DLgni~~~~~G~~~~~~~~~~l~L~g~~~iiGRSivIH~~~Dd~~~~~~~~s~~~g~aG~RiACgvI~~~  152 (154)
T d1srda_          83 DLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSPTTGNAGGRLACGVVGLT  152 (154)
T ss_dssp             BCCCCEECTTSEEEEEEEESSCCSSSTTCCTTCEEEEESSCCCTTCSCSSSTTTTCSCCCEEEEEECEEE
T ss_pred             cccCeEECCCCeEEEEEEeCcEEeCCCCCCCCcEEEEecCCcccCCCCcccCcccCCCCceEEEEEEEee
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Back     information, alignment and structure
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure