Citrus Sinensis ID: 031838

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150--
Protein Sequence
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ
Secondary Structure (PSIPRED)
cccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHHcccHHHHHHHHHcccccccccccccHHHHHHHHcccHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccHHHHHHHcccHHHHHHHHHHHHHcccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccHHHHHHHcccHHHHHHHHHccccccccccccccccc
Coil and Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfksLSKQQLLKSLslrndddrTLLHVAASCGHPEVVEILLSVDesanvvnavdeegwapihsaasiGNVTIVEMLLSkgadvnlkndggrtALHYAASKGWLKIVELLISRgakinskdkacnflyq
Flexible Loop (DISEMBL)
mdmdidqtikdkdlfkaaetgdsstfkslskQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISrgakinskdkacnflyq
Low Complexity Region (SEG)
MDMDIDQTIKDKDLFKAAETGDSSTFkslskqqllkslslRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ
Disordered region (IsUnstruct)
*********************************************RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFL**
Disordered Region (DISOPRED)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY*
Disordered Region (DISEMBL)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ
Disordered Region (DISPRO)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK*************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	152	2.2.26 [Sep-21-2011]
O75832	226	26S proteasome non-ATPase	no	no	0.697	0.469	0.5	1e-18
Q9Z2X3	231	26S proteasome non-ATPase	yes	no	0.697	0.458	0.5	1e-18
Q9Z2X2	231	26S proteasome non-ATPase	yes	no	0.730	0.480	0.487	2e-18
Q54HW1	232	26S proteasome non-ATPase	yes	no	0.861	0.564	0.414	3e-17
Q7TQP6	835	Serine/threonine-protein	no	no	0.625	0.113	0.42	3e-14
Q1RMI3	383	GA-binding protein subuni	no	no	0.657	0.261	0.417	1e-13
Q06547	395	GA-binding protein subuni	no	no	0.657	0.253	0.417	2e-13
Q5GIG6	834	Serine/threonine-protein	no	no	0.625	0.113	0.424	2e-13
Q4UMH6	1179	Putative ankyrin repeat p	yes	no	0.802	0.103	0.385	2e-13
G5E8K5	1961	Ankyrin-3 OS=Mus musculus	no	no	0.677	0.052	0.353	2e-13

>sp|O75832|PSD10_HUMAN 26S proteasome non-ATPase regulatory subunit 10 OS=Homo sapiens GN=PSMD10 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 67/110 (60%), Gaps = 4/110 (3%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 87  EIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Acts as an proto-oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.
Homo sapiens (taxid: 9606)

>sp|Q9Z2X3|PSD10_RAT 26S proteasome non-ATPase regulatory subunit 10 OS=Rattus norvegicus GN=Psmd10 PE=2 SV=1

 Score = 92.0 bits (227), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 55/110 (50%), Positives = 68/110 (61%), Gaps = 4/110 (3%)

Query: 36  KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G  
Sbjct: 30  KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRD 86

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            IV+ LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+
Sbjct: 87  EIVKALLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKN 136

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Rattus norvegicus (taxid: 10116)

>sp|Q9Z2X2|PSD10_MOUSE 26S proteasome non-ATPase regulatory subunit 10 OS=Mus musculus GN=Psmd10 PE=1 SV=3

 Score = 91.7 bits (226), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 57/117 (48%), Positives = 72/117 (61%), Gaps = 6/117 (5%)

Query: 31  KQQLL--KSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           K+++L  KSL+ R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H 
Sbjct: 23  KERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHI 79

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           AAS G   IV+ LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 80  AASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

Acts as an oncoprotein by being involved in negative regulation of tumor suppressors RB1 and p53/TP53. Overexpression is leading to phosphorylation of RB1 and proteasomal degradation of RB1. Regulates CDK4-mediated phosphorylation of RB1 by competing with CDKN2A for binding with CDK4. Facilitates binding of MDM2 to p53/TP53 and the mono- and polyubiquitination of p53/TP53 by MDM2 suggesting a function in targeting the TP53:MDM2 complex to the 26S proteasome. Involved in p53-independent apoptosis. Involved in regulation of NF-kappa-B by retaining it in the cytoplasm. Binds to the NF-kappa-B component RELA and accelerates its XPO1/CRM1-mediated nuclear export.

Mus musculus (taxid: 10090)

>sp|Q54HW1|PSD10_DICDI 26S proteasome non-ATPase regulatory subunit 10 OS=Dictyostelium discoideum GN=psmD10 PE=2 SV=1

 Score = 87.4 bits (215), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 4/135 (2%)

Query: 10  KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE 69
           K+ DL +  + G     K L + Q +K+   +++D+RT LH AA+ G   V + L+  D 
Sbjct: 12  KEDDLLEFVKVGKLLEVKDLIENQGVKA-DCKDEDERTPLHWAAAKGQISVAQYLM--DN 68

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
                N  D+ GW P+ SA S G+  +V++LL  GAD N  ND  RT LHYA+SKG   I
Sbjct: 69  CKCSPNTNDDGGWTPLTSATSAGHTHMVKLLLEFGADPNTVNDSKRTPLHYASSKGRSDI 128

Query: 130 VELLISRGAKINSKD 144
           V+LL++ GAK N KD
Sbjct: 129 VDLLLTHGAK-NRKD 142

Acts as a chaperone during the assembly of the 26S proteasome, specifically of the 19S regulatory complex (RC).

Dictyostelium discoideum (taxid: 44689)

>sp|Q7TQP6|TNI3K_RAT Serine/threonine-protein kinase TNNI3K OS=Rattus norvegicus GN=Tnni3k PE=2 SV=3

 Score = 77.8 bits (190), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 62/100 (62%), Gaps = 5/100 (5%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GHPE  E+LL    + NV +AV    + P+H AA  G+  +  +LL  GAD
Sbjct: 136 TALHIAAIAGHPEAAEVLLQHGANVNVQDAV---FFTPLHIAAYYGHEQVTSVLLKFGAD 192

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAK--INSKD 144
           VN+  + G   LH A++KG+  IV+LL+  G+K  +N++D
Sbjct: 193 VNVSGEVGDRPLHLASAKGFFNIVKLLVEEGSKADVNAQD 232

May play a role in cardiac physiology.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q1RMI3|GABP1_BOVIN GA-binding protein subunit beta-1 OS=Bos taurus GN=GABPB1 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+ +IVE+LL  GADVN
Sbjct: 42  LHLAAQYGHYSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHASIVEVLLKHGADVN 98

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY 151
            K+    TALH+A      ++VELLI  GA ++++ K C   +
Sbjct: 99  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 141

Transcription factor capable of interacting with purine rich repeats (GA repeats).

Bos taurus (taxid: 9913)

>sp|Q06547|GABP1_HUMAN GA-binding protein subunit beta-1 OS=Homo sapiens GN=GABPB1 PE=1 SV=2

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 59/103 (57%), Gaps = 3/103 (2%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+ +IVE+LL  GADVN
Sbjct: 42  LHLAAQYGHYSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHASIVEVLLKHGADVN 98

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY 151
            K+    TALH+A      ++VELLI  GA ++++ K C   +
Sbjct: 99  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 141

Transcription factor capable of interacting with purine rich repeats (GA repeats). Necessary for the expression of the Adenovirus E4 gene.

Homo sapiens (taxid: 9606)

>sp|Q5GIG6|TNI3K_MOUSE Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=4

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/99 (42%), Positives = 61/99 (61%), Gaps = 4/99 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GHPE VE+LL    + NV +AV    + P+H AA  G+  +  +LL  GAD
Sbjct: 136 TALHIAAIAGHPEAVEVLLQHGANVNVQDAV---FFTPLHIAAYYGHEQVTSVLLKFGAD 192

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKD 144
           VN+  + G   LH A++KG+  IV+LL+    A +N++D
Sbjct: 193 VNVSGEVGDRPLHLASAKGFFNIVKLLVEGNKADVNAQD 231

May play a role in cardiac physiology.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q4UMH6|Y381_RICFE Putative ankyrin repeat protein RF_0381 OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=RF_0381 PE=4 SV=1

 Score = 75.1 bits (183), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 5/127 (3%)

Query: 17  AAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA 76
           AA+ G+    K L+K      ++ + D+  T+LH A   G+  +V+ L  ++  AN+ +A
Sbjct: 645 AAKNGNLDLAKLLAKNG--ADVNAKTDNGETVLHYAVKSGNLHLVKWL--IENQANI-HA 699

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
             + G   +H A S  N  +V +L++ GADVN K D G TALHYA   G L +V LLIS 
Sbjct: 700 KTDNGETVLHYAVSFNNSDLVYLLIAYGADVNAKTDNGLTALHYAVYDGNLDLVSLLISH 759

Query: 137 GAKINSK 143
           GA +N+K
Sbjct: 760 GADVNAK 766

Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) (taxid: 315456)

>sp|G5E8K5|ANK3_MOUSE Ankyrin-3 OS=Mus musculus GN=Ank3 PE=1 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 47/133 (35%), Positives = 61/133 (45%), Gaps = 30/133 (22%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +D  T LHVAA CGH +V ++LL    S N                              
Sbjct: 348 NDYLTALHVAAHCGHYKVAKVLLDKKASPNAKALNGFTPLHIACKKNRIRVMELLLKHGA 407

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            + AV E G  PIH AA +G+V IV  L+  GA  N  N  G TALH AA  G  ++V  
Sbjct: 408 SIQAVTESGLTPIHVAAFMGHVNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRY 467

Query: 133 LISRGAKINSKDK 145
           L+  GA++ +K K
Sbjct: 468 LVQDGAQVEAKAK 480

Membrane-cytoskeleton linker. May participate in the maintenance/targeting of ion channels and cell adhesion molecules at the nodes of Ranvier and axonal initial segments (By similarity). In skeletal muscle, required for costamere localization of DMD and betaDAG1.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
224108912	244	predicted protein [Populus trichocarpa]	1.0	0.622	0.745	4e-56
359472517	243	PREDICTED: serine/threonine-protein phos	1.0	0.625	0.664	6e-53
255542108	243	ankyrin repeat-containing protein, putat	0.986	0.617	0.708	7e-53
449452082	243	PREDICTED: 26S proteasome non-ATPase reg	1.0	0.625	0.677	8e-53
297738054	167	unnamed protein product [Vitis vinifera]	0.967	0.880	0.671	7e-52
363814565	228	uncharacterized protein LOC100795610 [Gl	1.0	0.666	0.668	3e-51
351726608	243	uncharacterized protein LOC100499930 [Gl	1.0	0.625	0.660	3e-51
388490486	245	unknown [Lotus japonicus]	1.0	0.620	0.645	2e-50
4335756	247	putative ankyrin [Arabidopsis thaliana]	0.980	0.603	0.613	5e-46
30678058	240	26S proteasome non-ATPase regulatory sub	0.980	0.620	0.613	6e-46

>gi|224108912|ref|XP_002315012.1| predicted protein [Populus trichocarpa] gi|222864052|gb|EEF01183.1| predicted protein [Populus trichocarpa]

 Score =  222 bits (565), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 117/157 (74%), Positives = 133/157 (84%), Gaps = 5/157 (3%)

Query: 1   MDMDIDQT--IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP 58
           MDMDID    IKDKDLFKAAETGDSSTFKSL  ++L K+LSL+NDD R++LHVAAS GHP
Sbjct: 3   MDMDIDPPSQIKDKDLFKAAETGDSSTFKSLPPERLSKALSLQNDDGRSVLHVAASSGHP 62

Query: 59  EVVEILLSVDESAN-VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRT 116
           EVV+IL  +D+S++ VVN  DEEGWAP+HSAASIGNV IVE+LLSKG ADVNLKNDGGR 
Sbjct: 63  EVVKILSDIDQSSSAVVNGKDEEGWAPLHSAASIGNVEIVEILLSKGRADVNLKNDGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           ALHYAASKGWLKI +LLIS GAKIN KDK  C  L++
Sbjct: 123 ALHYAASKGWLKIAQLLISHGAKINIKDKVGCTPLHR 159

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472517|ref|XP_002271979.2| PREDICTED: serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C-like [Vitis vinifera]

 Score =  211 bits (538), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 105/158 (66%), Positives = 129/158 (81%), Gaps = 6/158 (3%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID T     IKD+DLF+AA++GDSS F++LS QQLL++LSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSL 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV++L   D S + +N+VDEEGWAP+HSAAS G+  IVE+L+S+GADVNLKNDGGR
Sbjct: 61  GHLEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           TALHYAASKGWLKI E LI   AKIN+KDK  C  L++
Sbjct: 121 TALHYAASKGWLKIAEFLILHNAKINAKDKIGCTPLHR 158

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542108|ref|XP_002512118.1| ankyrin repeat-containing protein, putative [Ricinus communis] gi|223549298|gb|EEF50787.1| ankyrin repeat-containing protein, putative [Ricinus communis]

 Score =  211 bits (538), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 112/158 (70%), Positives = 127/158 (80%), Gaps = 8/158 (5%)

Query: 3   MDIDQT------IKDKDLFKAAETGDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC 55
           M+ID T      I DKDLFKAAE+GDSSTFKSLS +QL  +L SL+NDD R+LLHVAASC
Sbjct: 1   MEIDSTDQTGRQITDKDLFKAAESGDSSTFKSLSPEQLSTALLSLQNDDARSLLHVAASC 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH EVV+ILL VDE  +VVN+ DEEGW P+HSAASIGN+ IVE+LLSKGADVN K DGGR
Sbjct: 61  GHLEVVKILLDVDEPKSVVNSKDEEGWTPLHSAASIGNLEIVEILLSKGADVNAKTDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
            ALHYAASKGWLKI E+LI  GAKIN KDK  C  L++
Sbjct: 121 AALHYAASKGWLKIAEVLILHGAKINLKDKVGCTSLHR 158

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452082|ref|XP_004143789.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus] gi|449513555|ref|XP_004164356.1| PREDICTED: 26S proteasome non-ATPase regulatory subunit 10-like [Cucumis sativus]

 Score =  211 bits (537), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 107/158 (67%), Positives = 126/158 (79%), Gaps = 6/158 (3%)

Query: 1   MDMDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASC 55
           MDM+ID +     IKD DLFKAAETGDSS F +L+  QL +SLSLRN+DDR+LLHVA S 
Sbjct: 1   MDMEIDASKDVCLIKDNDLFKAAETGDSSVFTALTPHQLSQSLSLRNEDDRSLLHVAVSS 60

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           GH +VV+IL++ D+S  V+N  DEEGWAPIHSAASIG   I+++LLS GADVNLKNDGGR
Sbjct: 61  GHADVVKILVTADQSTKVINCADEEGWAPIHSAASIGRSDILDILLSGGADVNLKNDGGR 120

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           TALHYA+SKGWLKI E LIS GAKIN KDK  C  L++
Sbjct: 121 TALHYASSKGWLKIAETLISHGAKINLKDKVGCTPLHR 158

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738054|emb|CBI27255.3| unnamed protein product [Vitis vinifera]

 Score =  208 bits (529), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 102/152 (67%), Positives = 124/152 (81%), Gaps = 5/152 (3%)

Query: 3   MDIDQT-----IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH 57
           M+ID T     IKD+DLF+AA++GDSS F++LS QQLL++LSLRN+DDR+LLHVA S GH
Sbjct: 1   MEIDPTEPEAQIKDEDLFRAADSGDSSVFRALSPQQLLRALSLRNEDDRSLLHVATSLGH 60

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
            EVV++L   D S + +N+VDEEGWAP+HSAAS G+  IVE+L+S+GADVNLKNDGGRTA
Sbjct: 61  LEVVKMLSEADPSVSGINSVDEEGWAPLHSAASSGHTEIVEILISRGADVNLKNDGGRTA 120

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKACNF 149
           LHYAASKGWLKI E LI   AKIN+KDKA   
Sbjct: 121 LHYAASKGWLKIAEFLILHNAKINAKDKAYRL 152

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814565|ref|NP_001242758.1| uncharacterized protein LOC100795610 [Glycine max] gi|255634879|gb|ACU17798.1| unknown [Glycine max]

 Score =  206 bits (524), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/157 (66%), Positives = 128/157 (81%), Gaps = 5/157 (3%)

Query: 1   MDMDIDQ----TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           M++DI++     +K+KDLFKAAE G++STF++LS + L K+LSLRN+D R+LLHVAAS G
Sbjct: 3   MEVDIEKKQQDVVKEKDLFKAAEEGEASTFEALSSEILSKALSLRNEDARSLLHVAASSG 62

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
           H +VV+I LS D SA VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GGR 
Sbjct: 63  HSQVVKIALSCDASAGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGGRA 122

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           ALHYAASKGW+KI E+LIS  AKIN KDK  C  L++
Sbjct: 123 ALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHR 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726608|ref|NP_001238156.1| uncharacterized protein LOC100499930 [Glycine max] gi|255627777|gb|ACU14233.1| unknown [Glycine max]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 105/159 (66%), Positives = 126/159 (79%), Gaps = 7/159 (4%)

Query: 1   MDMDIDQ------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAAS 54
           M+M++D        +K+KDLFKAAE GD STF++ S + L K+LSLRN+D R+LLHVAAS
Sbjct: 1   MEMEVDTEKKQQDVVKEKDLFKAAEEGDMSTFEAHSSETLSKALSLRNEDARSLLHVAAS 60

Query: 55  CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG 114
            GH +VV++LLS D S  VVN  DEEGWAP+HSAASIG+V IVE LLSKGADVNLKN+GG
Sbjct: 61  SGHSQVVKMLLSCDASVGVVNCADEEGWAPLHSAASIGSVEIVETLLSKGADVNLKNNGG 120

Query: 115 RTALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           RTALHYAASKGW+KI E+LIS  AKIN KDK  C  L++
Sbjct: 121 RTALHYAASKGWVKIAEMLISHDAKINIKDKVGCTPLHR 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388490486|gb|AFK33309.1| unknown [Lotus japonicus]

 Score =  203 bits (516), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 104/161 (64%), Positives = 128/161 (79%), Gaps = 9/161 (5%)

Query: 1   MDMDIDQ--------TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVA 52
           M+M++D          +K+KDLFKAAE GD+STF++ S + L +SLSLRN+D R+LLHVA
Sbjct: 1   MEMEVDSEKNQQDTVMVKEKDLFKAAEEGDTSTFQASSPETLSESLSLRNEDARSLLHVA 60

Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           AS GH +VV+ILLS D SA+VVN+ D+EGWAP+HSAASIGN+ IVE LLSKGADVNLKN 
Sbjct: 61  ASSGHSQVVKILLSADASASVVNSADDEGWAPLHSAASIGNLEIVEALLSKGADVNLKNG 120

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           GGRTALHYAASKG +KI E+LIS  AK+N KDK  C  L++
Sbjct: 121 GGRTALHYAASKGRVKIAEILISHDAKVNIKDKVGCTPLHR 161

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|4335756|gb|AAD17433.1| putative ankyrin [Arabidopsis thaliana]

 Score =  189 bits (479), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 122/150 (81%), Gaps = 1/150 (0%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           KG L+I +LL++ GAKIN  DK  C  L++
Sbjct: 126 KGRLEIAQLLLTHGAKINITDKVGCTPLHR 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30678058|ref|NP_178442.2| 26S proteasome non-ATPase regulatory subunit 10 [Arabidopsis thaliana] gi|26449603|dbj|BAC41927.1| putative ankyrin [Arabidopsis thaliana] gi|28950799|gb|AAO63323.1| At2g03430 [Arabidopsis thaliana] gi|330250605|gb|AEC05699.1| 26S proteasome non-ATPase regulatory subunit 10 [Arabidopsis thaliana]

 Score =  188 bits (478), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 92/150 (61%), Positives = 122/150 (81%), Gaps = 1/150 (0%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D  + ++D++LFKAAE GDSS F SLS++QL KSL+ RN+D R+LLHVAAS GH ++V++
Sbjct: 6   DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
           L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct: 66  LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query: 124 KGWLKIVELLISRGAKINSKDK-ACNFLYQ 152
           KG L+I +LL++ GAKIN  DK  C  L++
Sbjct: 126 KGRLEIAQLLLTHGAKINITDKVGCTPLHR 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	152
TAIR|locus:2063804	240	AT2G03430 "AT2G03430" [Arabido	0.980	0.620	0.56	4.2e-40
UNIPROTKB|E2RA22	226	PSMD10 "Uncharacterized protei	0.664	0.446	0.495	1.1e-18
UNIPROTKB|O75832	226	PSMD10 "26S proteasome non-ATP	0.664	0.446	0.495	1.1e-18
UNIPROTKB|Q2KI59	151	PSMD10 "Proteasome (Prosome, m	0.664	0.668	0.495	1.1e-18
RGD|620350	231	Psmd10 "proteasome (prosome, m	0.664	0.437	0.495	1.4e-18
MGI|MGI:1858898	231	Psmd10 "proteasome (prosome, m	0.664	0.437	0.495	2.2e-18
DICTYBASE|DDB_G0289189	232	psmD10 "26S proteasome non-ATP	0.664	0.435	0.461	5.3e-17
ZFIN|ZDB-GENE-050112-1	226	psmd10 "proteasome (prosome, m	0.664	0.446	0.432	6.7e-17
UNIPROTKB|F1P1R3	189	PSMD10 "Uncharacterized protei	0.644	0.518	0.435	9.8e-16
UNIPROTKB|G5E5T9	232	GABPB1 "GA-binding protein sub	0.631	0.413	0.434	1.4e-14

TAIR|locus:2063804 AT2G03430 "AT2G03430" [Arabidopsis thaliana (taxid:3702)]

 Score = 427 (155.4 bits), Expect = 4.2e-40, P = 4.2e-40
 Identities = 84/150 (56%), Positives = 111/150 (74%)

Query:     4 DIDQTIKDKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDRTLLHVAASCGHPEVVEI 63
             D  + ++D++LFKAAE GDSS F              RN+D R+LLHVAAS GH ++V++
Sbjct:     6 DTAKQMRDEELFKAAEWGDSSLFMSLSEEQLSKSLNFRNEDGRSLLHVAASFGHSQIVKL 65

Query:    64 LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
             L S DE+  V+N+ D+EGWAP+HSAASIGN  +VE+LL++GADVN KN+GGRTALHYAAS
Sbjct:    66 LSSSDEAKTVINSKDDEGWAPLHSAASIGNAELVEVLLTRGADVNAKNNGGRTALHYAAS 125

Query:   124 KGWLKIVELLISRGAKINSKDKA-CNFLYQ 152
             KG L+I +LL++ GAKIN  DK  C  L++
Sbjct:   126 KGRLEIAQLLLTHGAKINITDKVGCTPLHR 155

GO:0008150 "biological_process" evidence=ND

GO:0005618 "cell wall" evidence=IDA

GO:0000724 "double-strand break repair via homologous recombination" evidence=RCA

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0007140 "male meiosis" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0016444 "somatic cell DNA recombination" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042023 "DNA endoreduplication" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043161 "proteasomal ubiquitin-dependent protein catabolic process" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0043248 "proteasome assembly" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0051510 "regulation of unidimensional cell growth" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

UNIPROTKB|E2RA22 PSMD10 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 52/105 (49%), Positives = 63/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|O75832 PSMD10 "26S proteasome non-ATPase regulatory subunit 10" [Homo sapiens (taxid:9606)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 52/105 (49%), Positives = 63/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

GO:0005515 "protein binding" evidence=IPI

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;TAS

GO:0030307 "positive regulation of cell growth" evidence=IDA

GO:0070682 "proteasome regulatory particle assembly" evidence=IMP

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IDA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IMP

GO:0043409 "negative regulation of MAPK cascade" evidence=IMP

GO:0043066 "negative regulation of apoptotic process" evidence=IDA;IMP

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IDA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IDA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IMP

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IDA

GO:0000502 "proteasome complex" evidence=TAS

GO:0005838 "proteasome regulatory particle" evidence=TAS

GO:0000075 "cell cycle checkpoint" evidence=TAS

GO:0000082 "G1/S transition of mitotic cell cycle" evidence=TAS

GO:0000084 "S phase of mitotic cell cycle" evidence=TAS

GO:0000209 "protein polyubiquitination" evidence=TAS

GO:0000216 "M/G1 transition of mitotic cell cycle" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0002479 "antigen processing and presentation of exogenous peptide antigen via MHC class I, TAP-dependent" evidence=TAS

GO:0005654 "nucleoplasm" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006521 "regulation of cellular amino acid metabolic process" evidence=TAS

GO:0006915 "apoptotic process" evidence=TAS

GO:0006977 "DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0031145 "anaphase-promoting complex-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0042590 "antigen processing and presentation of exogenous peptide antigen via MHC class I" evidence=TAS

GO:0042981 "regulation of apoptotic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0051436 "negative regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051437 "positive regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0051439 "regulation of ubiquitin-protein ligase activity involved in mitotic cell cycle" evidence=TAS

GO:0015629 "actin cytoskeleton" evidence=IDA

GO:0045111 "intermediate filament cytoskeleton" evidence=IDA

UNIPROTKB|Q2KI59 PSMD10 "Proteasome (Prosome, macropain) 26S subunit, non-ATPase, 10" [Bos taurus (taxid:9913)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 52/105 (49%), Positives = 63/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct:    92 LLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

RGD|620350 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
 Identities = 52/105 (49%), Positives = 64/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNEKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G TALHYAASK   +I  +L+  GA  ++K+
Sbjct:    92 LLIKGAQVNAVNQNGCTALHYAASKNRHEIAVMLLEGGANPDAKN 136

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO;ISS

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=IEA;ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO;ISS

GO:0008134 "transcription factor binding" evidence=ISO

GO:0015629 "actin cytoskeleton" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO;ISS

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO;ISS

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO;ISS

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO;ISS

GO:0043066 "negative regulation of apoptotic process" evidence=ISO;ISS

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO;ISS

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO;ISS

GO:0045111 "intermediate filament cytoskeleton" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO;ISS

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO;ISS

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO;ISS

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=ISO

MGI|MGI:1858898 Psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Mus musculus (taxid:10090)]

 Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
 Identities = 52/105 (49%), Positives = 63/105 (60%)

Query:    41 RNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             R D D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ 
Sbjct:    35 RTDQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKA 91

Query:   100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             LL KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct:    92 LLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=ISO

GO:0000502 "proteasome complex" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0006915 "apoptotic process" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=ISO

GO:0008134 "transcription factor binding" evidence=ISO

GO:0030307 "positive regulation of cell growth" evidence=ISO

GO:0031398 "positive regulation of protein ubiquitination" evidence=ISO

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=ISO

GO:0032436 "positive regulation of proteasomal ubiquitin-dependent protein catabolic process" evidence=ISO

GO:0043066 "negative regulation of apoptotic process" evidence=ISO

GO:0043409 "negative regulation of MAPK cascade" evidence=ISO

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=ISO

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=ISO

GO:0070682 "proteasome regulatory particle assembly" evidence=ISO

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=ISO

DICTYBASE|DDB_G0289189 psmD10 "26S proteasome non-ATPase regulatory subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 209 (78.6 bits), Expect = 5.3e-17, P = 5.3e-17
 Identities = 48/104 (46%), Positives = 65/104 (62%)

Query:    41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +++D+RT LH AA+ G   V + L+  D      N  D+ GW P+ SA S G+  +V++L
Sbjct:    42 KDEDERTPLHWAAAKGQISVAQYLM--DNCKCSPNTNDDGGWTPLTSATSAGHTHMVKLL 99

Query:   101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             L  GAD N  ND  RT LHYA+SKG   IV+LL++ GAK N KD
Sbjct:   100 LEFGADPNTVNDSKRTPLHYASSKGRSDIVDLLLTHGAK-NRKD 142

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050112-1 psmd10 "proteasome (prosome, macropain) 26S subunit, non-ATPase, 10" [Danio rerio (taxid:7955)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 45/104 (43%), Positives = 59/104 (56%)

Query:    42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + D RT LH A S GH  + + LL +      V+  D+  W P+H AAS G   IV  L+
Sbjct:    37 DQDSRTALHWACSAGHVNIAQFLLDLGVE---VDLKDDACWTPLHIAASAGREEIVRSLI 93

Query:   102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             SKGA +N  N  G T LHYAASK   +I ++L+  GA  N+ DK
Sbjct:    94 SKGAQLNSVNQNGCTPLHYAASKNLYEIAQILLENGADPNATDK 137

GO:0000502 "proteasome complex" evidence=IEA

GO:0055088 "lipid homeostasis" evidence=IMP

UNIPROTKB|F1P1R3 PSMD10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 44/101 (43%), Positives = 57/101 (56%)

Query:    44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
             D RT LH A S GH  V ++LL +      V   D+ GW P+H AAS G   IV+ L+ K
Sbjct:     2 DSRTALHWACSAGHAAVADLLLGLGVP---VGDKDDAGWTPLHIAASAGRDEIVKALIDK 58

Query:   104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             GA +N  N  G T LHYAASK   +I  +L+  GA  ++ D
Sbjct:    59 GAPINAVNQNGCTPLHYAASKNKQEIAIMLLENGADPDATD 99

GO:0000122 "negative regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007253 "cytoplasmic sequestering of NF-kappaB" evidence=IEA

GO:0008134 "transcription factor binding" evidence=IEA

GO:0008540 "proteasome regulatory particle, base subcomplex" evidence=IEA

GO:0015629 "actin cytoskeleton" evidence=IEA

GO:0030307 "positive regulation of cell growth" evidence=IEA

GO:0031398 "positive regulation of protein ubiquitination" evidence=IEA

GO:0032088 "negative regulation of NF-kappaB transcription factor activity" evidence=IEA

GO:0043066 "negative regulation of apoptotic process" evidence=IEA

GO:0043409 "negative regulation of MAPK cascade" evidence=IEA

GO:0043518 "negative regulation of DNA damage response, signal transduction by p53 class mediator" evidence=IEA

GO:0045111 "intermediate filament cytoskeleton" evidence=IEA

GO:0045737 "positive regulation of cyclin-dependent protein kinase activity" evidence=IEA

GO:0070682 "proteasome regulatory particle assembly" evidence=IEA

GO:0090201 "negative regulation of release of cytochrome c from mitochondria" evidence=IEA

UNIPROTKB|G5E5T9 GABPB1 "GA-binding protein subunit beta-1" [Bos taurus (taxid:9913)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 43/99 (43%), Positives = 58/99 (58%)

Query:    49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
             LH+AA  GH    E+LL    S +    VD     P+H AAS G+ +IVE+LL  GADVN
Sbjct:    42 LHLAAQYGHYSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHASIVEVLLKHGADVN 98

Query:   109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC 147
              K+    TALH+A      ++VELLI  GA ++++ K C
Sbjct:    99 AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFC 137

GO:0046982 "protein heterodimerization activity" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0044212 "transcription regulatory region DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0006061702 hypothetical protein (245 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	152
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	4e-33
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	1e-28
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-26
cd00204	126	cd00204, ANK, ankyrin repeats; ankyrin repeats med	2e-22
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	4e-15
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	3e-14
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	6e-14
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-13
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	1e-12
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-12
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	8e-12
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-11
PHA03100	422	PHA03100, PHA03100, ankyrin repeat protein; Provis	4e-11
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	5e-10
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-10
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	2e-09
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-09
PHA02878	477	PHA02878, PHA02878, ankyrin repeat protein; Provis	1e-08
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	1e-08
pfam00023	33	pfam00023, Ank, Ankyrin repeat	1e-08
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	3e-08
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	4e-08
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	6e-08
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	1e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	2e-07
TIGR00870	743	TIGR00870, trp, transient-receptor-potential calci	3e-07
PLN03192	823	PLN03192, PLN03192, Voltage-dependent potassium ch	5e-07
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	5e-07
PHA02946	446	PHA02946, PHA02946, ankyin-like protein; Provision	5e-07
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	6e-07
pfam00023	33	pfam00023, Ank, Ankyrin repeat	7e-07
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-06
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	1e-06
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	4e-06
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	5e-06
PHA02741	169	PHA02741, PHA02741, hypothetical protein; Provisio	7e-06
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	1e-05
PHA02874	434	PHA02874, PHA02874, ankyrin repeat protein; Provis	1e-05
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	1e-05
pfam12796	91	pfam12796, Ank_2, Ankyrin repeats (3 copies)	2e-05
pfam13637	54	pfam13637, Ank_4, Ankyrin repeats (many copies)	3e-05
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-05
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	5e-05
PHA02791	284	PHA02791, PHA02791, ankyrin-like protein; Provisio	6e-05
PHA03095	471	PHA03095, PHA03095, ankyrin-like protein; Provisio	7e-05
pfam00023	33	pfam00023, Ank, Ankyrin repeat	8e-05
COG0666	235	COG0666, Arp, FOG: Ankyrin repeat [General functio	1e-04
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	2e-04
PTZ00322	664	PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fruct	3e-04
PHA02859	209	PHA02859, PHA02859, ankyrin repeat protein; Provis	3e-04
smart00248	30	smart00248, ANK, ankyrin repeats	4e-04
pfam13857	56	pfam13857, Ank_5, Ankyrin repeats (many copies)	6e-04
smart00248	30	smart00248, ANK, ankyrin repeats	7e-04
PHA02875	413	PHA02875, PHA02875, ankyrin repeat protein; Provis	0.001
pfam13606	30	pfam13606, Ank_3, Ankyrin repeat	0.001
PHA02876	682	PHA02876, PHA02876, ankyrin repeat protein; Provis	0.003
PHA02917	661	PHA02917, PHA02917, ankyrin-like protein; Provisio	0.004

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  113 bits (284), Expect = 4e-33
 Identities = 53/105 (50%), Positives = 73/105 (69%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R++D RT LH+AAS GH EVV++LL   E+   VNA D +G  P+H AA  G++ IV++L
Sbjct: 3   RDEDGRTPLHLAASNGHLEVVKLLL---ENGADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L KGADVN ++  G T LH AA  G L +V+LL+  GA +N++DK
Sbjct: 60  LEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDK 104

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score =  102 bits (255), Expect = 1e-28
 Identities = 51/121 (42%), Positives = 74/121 (61%), Gaps = 5/121 (4%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA  G     K L +      ++ +++D RT LH+AA  GH E+V++LL   E    
Sbjct: 11  LHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLL---EKGAD 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VNA D++G  P+H AA  GN+ +V++LL  GADVN ++  GRT LH AA  G L++V+LL
Sbjct: 66  VNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLL 125

Query: 134 I 134
           +
Sbjct: 126 L 126

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 94.6 bits (236), Expect = 2e-26
 Identities = 44/96 (45%), Positives = 59/96 (61%), Gaps = 5/96 (5%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  G+ E+V++LL      N+ +         +H AA  GN+ IV++LL  GADVN
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTDT-----ALHLAARNGNLEIVKLLLEHGADVN 55

Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            K+  G TALH AA  G L+IV+LL+  GA IN KD
Sbjct: 56  AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

 Score = 85.9 bits (213), Expect = 2e-22
 Identities = 38/71 (53%), Positives = 54/71 (76%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           NA DE+G  P+H AAS G++ +V++LL  GADVN K++ GRT LH AA  G L+IV+LL+
Sbjct: 1   NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60

Query: 135 SRGAKINSKDK 145
            +GA +N++DK
Sbjct: 61  EKGADVNARDK 71

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats. Length = 126

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 66.1 bits (162), Expect = 4e-15
 Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 2/61 (3%)

Query: 85  IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +H AA  GN+ +V++LL KGADVNL +    TALH AA  G L+IV+LL+  GA +N+KD
Sbjct: 1   LHLAAKNGNLELVKLLLEKGADVNLGDTD--TALHLAARNGNLEIVKLLLEHGADVNAKD 58

Query: 145 K 145
           K
Sbjct: 59  K 59

Length = 91

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 68.2 bits (167), Expect = 3e-14
 Identities = 41/113 (36%), Positives = 60/113 (53%), Gaps = 12/113 (10%)

Query: 42  NDDDRTLLHVAASCGH-----PEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNV 94
             ++ T LH  ++  +      E+V++LL     ANV NA D  G  P+  A S    + 
Sbjct: 65  TKNNSTPLHYLSNIKYNLTDVKEIVKLLLE--YGANV-NAPDNNGITPLLYAISKKSNSY 121

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGW--LKIVELLISRGAKINSKDK 145
           +IVE LL  GA+VN+KN  G   LH         LKI++LLI +G  IN+K++
Sbjct: 122 SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNR 174

Length = 422

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 66.4 bits (161), Expect = 6e-14
 Identities = 50/130 (38%), Positives = 70/130 (53%), Gaps = 7/130 (5%)

Query: 13  DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP-----EVVEILLSV 67
            L  AA  GD    K L        ++ ++ D  T LH+AA  G+P     EV ++LL  
Sbjct: 76  PLHSAASKGDDKIVKLLLASGA--DVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEA 133

Query: 68  DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL 127
               +V N  DE+G  P+H AA  G+  IVE+LL  GAD N +N  G TAL  AA  G +
Sbjct: 134 GADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRI 193

Query: 128 KIVELLISRG 137
           ++V+LL+ +G
Sbjct: 194 ELVKLLLDKG 203

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 66.6 bits (163), Expect = 1e-13
 Identities = 32/105 (30%), Positives = 56/105 (53%), Gaps = 5/105 (4%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV-TIVEMLLSK 103
            +T LH+       +V +I+  + E+   VNA +  G+ P+H          ++++L+  
Sbjct: 47  GKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFTPLHLYLYNATTLDVIKLLIKA 106

Query: 104 GADVNLKNDGGRTALH-YAASKGWL--KIVELLISRGAKINSKDK 145
           GADVN K+  GRT LH Y +    +  K++ LL+ +GA +N+ D 
Sbjct: 107 GADVNAKDKVGRTPLHVYLSGF-NINPKVIRLLLRKGADVNALDL 150

Length = 471

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 63.5 bits (155), Expect = 1e-12
 Identities = 32/121 (26%), Positives = 52/121 (42%), Gaps = 17/121 (14%)

Query: 47  TLLHVAASCGHP--EVVEILLS----VDESANV---------VNAVDEEGWAPIHSAASI 91
            LLH+         +++++L+     ++    V         +N  D  G+ P+H A   
Sbjct: 143 NLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYN 202

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY 151
            N   V+ LL  GA+ NL N  G T LH A      +I +LL++ G  I +  +    LY
Sbjct: 203 NNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGPSIKTIIE--TLLY 260

Query: 152 Q 152
            
Sbjct: 261 F 261

Length = 422

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 57.6 bits (140), Expect = 3e-12
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           G   +H AA  G + +V+ LL KG D+N  ++ G TALH AA  G L++++LL+
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 61.1 bits (148), Expect = 8e-12
 Identities = 36/106 (33%), Positives = 57/106 (53%), Gaps = 3/106 (2%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +++++ + +T LH A   G  E +++L    E    VN  D+ G  PIH A       I+
Sbjct: 117 VNIKDAELKTFLHYAIKKGDLESIKMLF---EYGADVNIEDDNGCYPIHIAIKHNFFDII 173

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           ++LL KGA  N+K++ G + LH AA  G    ++LLI  G  I +K
Sbjct: 174 KLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNK 219

Length = 434

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 60.2 bits (145), Expect = 1e-11
 Identities = 50/154 (32%), Positives = 79/154 (51%), Gaps = 12/154 (7%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLS-KQQLLKSLSLRNDDDRTLLHVAASCGHPEV 60
               + + K  +L+       +++   L  K  + + L+ R+ D R  LH AAS G  ++
Sbjct: 29  LDLSNPSDKKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKI 88

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAA-----SIGNVTIVEMLLSKGA---DVNLKND 112
           V++LL+       VNA D +G  P+H AA       GN+ + ++LL  GA     NL+++
Sbjct: 89  VKLLLASGAD---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDE 145

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
            G T LH+AA  G   IVELL+  GA  NS++  
Sbjct: 146 DGNTPLHWAALNGDADIVELLLEAGADPNSRNSY 179

Length = 235

>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional

 Score = 59.3 bits (144), Expect = 4e-11
 Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 10/107 (9%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG-----NVTIVEML 100
              L++A    + +VV+ILL  D  A++ ++       P+H  ++I         IV++L
Sbjct: 36  VLPLYLAKEARNIDVVKILL--DNGADINSSTKNN-STPLHYLSNIKYNLTDVKEIVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASK--GWLKIVELLISRGAKINSKDK 145
           L  GA+VN  ++ G T L YA SK      IVE L+  GA +N K+ 
Sbjct: 93  LEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNS 139

Length = 422

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 56.2 bits (136), Expect = 5e-10
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 9/114 (7%)

Query: 41  RNDDDRTLLHVAAS--CGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI-- 96
           ++   RT LHV  S    +P+V+ +LL   + A+V NA+D  G  P+       N  +  
Sbjct: 113 KDKVGRTPLHVYLSGFNINPKVIRLLL--RKGADV-NALDLYGMTPLAVLLKSRNANVEL 169

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAA--SKGWLKIVELLISRGAKINSKDKACN 148
           + +L+  GADV   +D  R+ LH+     K   +IV  LI  G    + D   N
Sbjct: 170 LRLLIDAGADVYAVDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGN 223

Length = 471

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 51.6 bits (124), Expect = 6e-10
 Identities = 21/55 (38%), Positives = 31/55 (56%)

Query: 67  VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           ++     +NA D  G  P+H AA  G + +V+ LL  G D+NL++  G TAL  A
Sbjct: 2   LEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56

Length = 56

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 54.5 bits (131), Expect = 2e-09
 Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 4/108 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
               T LH A       + E+LLS   + N+ +  +    +P+H A    N  IV +LL 
Sbjct: 166 HKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNN---SPLHHAVKHYNKPIVHILLE 222

Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKACNF 149
            GA  + ++  G T LH +        I++LL+  G  +N+K      
Sbjct: 223 NGASTDARDKCGNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGL 270

Length = 477

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 49.5 bits (119), Expect = 3e-09
 Identities = 23/56 (41%), Positives = 33/56 (58%), Gaps = 3/56 (5%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           RT LH AA  G  E+V+ LL   E    +N  DE+G   +H AA  GN+ ++++LL
Sbjct: 2   RTALHKAAISGRLELVKYLL---EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional

 Score = 52.2 bits (125), Expect = 1e-08
 Identities = 27/90 (30%), Positives = 47/90 (52%), Gaps = 2/90 (2%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
           E+ ++LLS     N+ +    +G   +H A    +  + E+LLS GA+VN+ +    + L
Sbjct: 148 EITKLLLSYGADINMKD--RHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTNNSPL 205

Query: 119 HYAASKGWLKIVELLISRGAKINSKDKACN 148
           H+A       IV +L+  GA  +++DK  N
Sbjct: 206 HHAVKHYNKPIVHILLENGASTDARDKCGN 235

Length = 477

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 52.6 bits (126), Expect = 1e-08
 Identities = 42/166 (25%), Positives = 71/166 (42%), Gaps = 36/166 (21%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           D      +L   A TG+++  + L K +      + +   RT LH+AAS G+ + V +LL
Sbjct: 521 DDPNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLL 578

Query: 66  SVDESANVVNAVDEEG----WAPIHS---------------------------AASIGNV 94
              + A  V+  D  G    W  I +                           AA   ++
Sbjct: 579 ---KHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHAAGDLLCTAAKRNDL 635

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           T ++ LL +G +V+ ++  G TAL  A ++  + +V LLI  GA +
Sbjct: 636 TAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADV 681

Length = 823

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 47.5 bits (114), Expect = 1e-08
 Identities = 16/32 (50%), Positives = 23/32 (71%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G T LH AA  G L++V+LL+  GA +N++DK
Sbjct: 2   GNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 50.8 bits (121), Expect = 3e-08
 Identities = 25/46 (54%), Positives = 31/46 (67%)

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           I EMLL  GADVN K+    T +HYAA +G  K+V LL+S GA +N
Sbjct: 160 IAEMLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVN 205

Length = 682

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 50.8 bits (122), Expect = 4e-08
 Identities = 35/98 (35%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS--AASIGNVT-IVEMLLSKGADVNL 109
            +  +  V E+   +   A+V N   E G  P+H     S   V  IV +LL  GADVN 
Sbjct: 20  LNASNVTVEEVRRLLAAGADV-NFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNA 78

Query: 110 KNDGGRTALH-YAASKGWLKIVELLISRGAKINSKDKA 146
               G T LH Y  +   L +++LLI  GA +N+KDK 
Sbjct: 79  PERCGFTPLHLYLYNATTLDVIKLLIKAGADVNAKDKV 116

Length = 471

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 50.3 bits (120), Expect = 6e-08
 Identities = 31/88 (35%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           L  +AAS G      ILL         N  D +G  P+H A + G+V +V +LL  GAD 
Sbjct: 86  LCQLAAS-GDAVGARILL---TGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADP 141

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLIS 135
            L +  G+T L  A   G+ ++V+LL  
Sbjct: 142 TLLDKDGKTPLELAEENGFREVVQLLSR 169

Length = 664

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 49.6 bits (118), Expect = 1e-07
 Identities = 32/107 (29%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           L + N  D ++L +   C   ++++ +L   +    VN  D E    +H A   G++  +
Sbjct: 86  LLIDNGVDTSILPI--PCIEKDMIKTIL---DCGIDVNIKDAELKTFLHYAIKKGDLESI 140

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +ML   GADVN+++D G   +H A    +  I++LL+ +GA  N KD
Sbjct: 141 KMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKD 187

Length = 434

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 49.3 bits (117), Expect = 1e-07
 Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 6/109 (5%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEML 100
           N +D +LL    +    E +E  L + ++   VN++D+    P+H A+   +++ +V  L
Sbjct: 238 NKNDLSLLKAIRN----EDLETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKL 293

Query: 101 LSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKACN 148
           L +GADVN KN  G T L+  A  G+  + +  LI  GA +N+ D+   
Sbjct: 294 LERGADVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYI 342

Length = 682

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 48.5 bits (115), Expect = 2e-07
 Identities = 37/132 (28%), Positives = 58/132 (43%), Gaps = 15/132 (11%)

Query: 14  LFKAAETGDSSTFKSLSKQ-QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN 72
           + K A +G+   +  +++  + +K +  R   D  L           + E+LL   E   
Sbjct: 124 ILKEAISGNDIHYDKINESIEYMKLIKERIQQDELL-----------IAEMLL---EGGA 169

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            VNA D     PIH AA  GN  +V +LLS GADVN+      + L  A     +  ++ 
Sbjct: 170 DVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSVLECAVDSKNIDTIKA 229

Query: 133 LISRGAKINSKD 144
           +I   + IN  D
Sbjct: 230 IIDNRSNINKND 241

Length = 682

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 48.8 bits (116), Expect = 2e-07
 Identities = 32/101 (31%), Positives = 56/101 (55%), Gaps = 2/101 (1%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  + LH A   G  + VE LL + + A+ V    ++G  P+H A  +  + I+++L+++
Sbjct: 67  DIESELHDAVEEGDVKAVEELLDLGKFADDV--FYKDGMTPLHLATILKKLDIMKLLIAR 124

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD ++ N    + LH A   G +K +ELLI   A ++ +D
Sbjct: 125 GADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIED 165

Length = 413

>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel protein

 Score = 48.2 bits (115), Expect = 3e-07
 Identities = 42/136 (30%), Positives = 57/136 (41%), Gaps = 26/136 (19%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-----DESANVVNAVDE------EGW 82
           LL +LS R     TLLH A S  + + VE +L        +S  +  A D+       G 
Sbjct: 71  LLLNLSCRGAVGDTLLH-AISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGI 129

Query: 83  APIHSAASIGNVTIVEMLLSKGADVNLKNDG--------------GRTALHYAASKGWLK 128
             +H AA   N  IV++LL +GA V  +  G              G + L+ AA  G   
Sbjct: 130 TALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPS 189

Query: 129 IVELLISRGAKINSKD 144
           IV LL    A I + D
Sbjct: 190 IVALLSEDPADILTAD 205

The Transient Receptor Potential Ca2+ Channel (TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also been called the store-operated calcium channel (SOC) family. The prototypical members include the Drosophila retinal proteinsTRP and TRPL (Montell and Rubin, 1989; Hardie and Minke, 1993). SOC members of the family mediate the entry of extracellular Ca2+ into cells in responseto depletion of intracellular Ca2+ stores (Clapham, 1996) and agonist stimulated production of inositol-1,4,5 trisphosphate (IP3). One member of the TRP-CCfamily, mammalian Htrp3, has been shown to form a tight complex with the IP3 receptor (TC #1.A.3.2.1). This interaction is apparently required for IP3 tostimulate Ca2+ release via Htrp3. The vanilloid receptor subtype 1 (VR1), which is the receptor for capsaicin (the ?hot? ingredient in chili peppers) and servesas a heat-activated ion channel in the pain pathway (Caterina et al., 1997), is also a member of this family. The stretch-inhibitable non-selective cation channel(SIC) is identical to the vanilloid receptor throughout all of its first 700 residues, but it exhibits a different sequence in its last 100 residues. VR1 and SICtransport monovalent cations as well as Ca2+. VR1 is about 10x more permeable to Ca2+ than to monovalent ions. Ca2+ overload probably causes cell deathafter chronic exposure to capsaicin. (McCleskey and Gold, 1999) [Transport and binding proteins, Cations and iron carrying compounds]. Length = 743

>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel; Provisional

 Score = 47.6 bits (113), Expect = 5e-07
 Identities = 21/58 (36%), Positives = 33/58 (56%)

Query: 87  SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           + AS GN  ++E LL    D ++ +  GRT LH AASKG+   V +L+     ++ +D
Sbjct: 531 TVASTGNAALLEELLKAKLDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACNVHIRD 588

Length = 823

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 38/101 (37%), Positives = 56/101 (55%), Gaps = 5/101 (4%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH A++    +  +I++++ E    VNA D     PIH AA   NV I+  LL  GAD
Sbjct: 343 TPLHQASTLDRNK--DIVITLLELGANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD 400

Query: 107 VNLKNDGGRTALHYA--ASKGWLKIVELLISRGAKINSKDK 145
           +   +    TALH+A   +  ++  V+ LI RGA +NSK+K
Sbjct: 401 IEALSQKIGTALHFALCGTNPYMS-VKTLIDRGANVNSKNK 440

Length = 682

>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional

 Score = 47.4 bits (112), Expect = 5e-07
 Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 2/70 (2%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVEL 132
           N  D++G  P+H A+ I N  IV MLL+ GAD N  +   +T L+Y +      ++ + L
Sbjct: 66  NETDDDGNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINL 125

Query: 133 LISRGAKINS 142
           L+  GAKIN+
Sbjct: 126 LVQYGAKINN 135

Length = 446

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 47.3 bits (112), Expect = 6e-07
 Identities = 34/101 (33%), Positives = 52/101 (51%), Gaps = 4/101 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  + LH+A   G  + +E+L+  D  A  ++  D  G  P+  A + G++ I +MLL
Sbjct: 132 NTDKFSPLHLAVMMGDIKGIELLI--DHKA-CLDIEDCCGCTPLIIAMAKGDIAICKMLL 188

Query: 102 SKGADVN-LKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
             GA+++    +G   AL YA     + IV L I RGA  N
Sbjct: 189 DSGANIDYFGKNGCVAALCYAIENNKIDIVRLFIKRGADCN 229

Length = 413

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 42.9 bits (102), Expect = 7e-07
 Identities = 14/33 (42%), Positives = 23/33 (69%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           +G  P+H AA  G++ +V++LL  GADVN ++ 
Sbjct: 1   DGNTPLHLAARNGHLEVVKLLLEAGADVNARDK 33

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 46.4 bits (109), Expect = 1e-06
 Identities = 34/82 (41%), Positives = 48/82 (58%), Gaps = 8/82 (9%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG-----WLKI 129
            A D +G  P+HSAAS G+  IV++LL+ GADVN K+  G T LH AA  G      +++
Sbjct: 67  AARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEV 126

Query: 130 VELLISRGAK---INSKDKACN 148
            +LL+  GA     N +D+  N
Sbjct: 127 AKLLLEAGADLDVNNLRDEDGN 148

Length = 235

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 34/105 (32%), Positives = 48/105 (45%), Gaps = 7/105 (6%)

Query: 41  RNDDDRTLLHVAASCGHP--EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV--TI 96
            +D  R+LLH       P   +V  L+          A D  G  P+HS A+  +   ++
Sbjct: 183 VDDRFRSLLHHHLQSFKPRARIVRELIRAGCDPA---ATDMLGNTPLHSMATGSSCKRSL 239

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           V  LL  G  +N +N  G+T LHYAA     +    LI+ GA IN
Sbjct: 240 VLPLLIAGISINARNRYGQTPLHYAAVFNNPRACRRLIALGADIN 284

Length = 471

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 4e-06
 Identities = 42/148 (28%), Positives = 71/148 (47%), Gaps = 11/148 (7%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +D  ID  IKD +    L  A + GD  + K L +      +++ +D+    +H+A    
Sbjct: 111 LDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYG--ADVNIEDDNGCYPIHIAIKHN 168

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             +++++LL   E     N  D  G +P+H+AA  G+   +++L+  G  +  K   G T
Sbjct: 169 FFDIIKLLL---EKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHIMNKCKNGFT 225

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKD 144
            LH A        +ELLI+  A IN +D
Sbjct: 226 PLHNAIIHN-RSAIELLIN-NASINDQD 251

Length = 434

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 44.6 bits (105), Expect = 5e-06
 Identities = 28/114 (24%), Positives = 62/114 (54%), Gaps = 7/114 (6%)

Query: 32  QQLLKSLSLRND----DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           ++LL      +D    D  T LH+A      +++++L++     ++ N    + ++P+H 
Sbjct: 85  EELLDLGKFADDVFYKDGMTPLHLATILKKLDIMKLLIARGADPDIPNT---DKFSPLHL 141

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           A  +G++  +E+L+   A +++++  G T L  A +KG + I ++L+  GA I+
Sbjct: 142 AVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANID 195

Length = 413

>gnl|CDD|165108 PHA02741, PHA02741, hypothetical protein; Provisional

 Score = 43.1 bits (101), Expect = 7e-06
 Identities = 32/108 (29%), Positives = 49/108 (45%), Gaps = 8/108 (7%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV---VEILLSVDESANVVNAVDEEGWAPIHSAAS 90
           L + ++ +N +     H AA CG  ++       +  D  A  +NA D+ G   IH AA 
Sbjct: 10  LEEMIAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAE 69

Query: 91  IGN----VTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELL 133
                    I++ L+  GAD+N +    G TALH AA +    + E L
Sbjct: 70  KHEAQLAAEIIDHLIELGADINAQEMLEGDTALHLAAHRRDHDLAEWL 117

Length = 169

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 40.3 bits (95), Expect = 1e-05
 Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 2/52 (3%)

Query: 14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
          L KAA +G     K L   +    ++  ++D  T LH+AA  G+ EV+++LL
Sbjct: 5  LHKAAISGRLELVKYLL--EKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54

Length = 54

>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional

 Score = 43.4 bits (102), Expect = 1e-05
 Identities = 33/145 (22%), Positives = 67/145 (46%), Gaps = 30/145 (20%)

Query: 32  QQLLKS----LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           ++++K+    +++  D+  T L  A   G  ++VE+ +   +    +N ++ +   P+ +
Sbjct: 18  EKIIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFI---KHGADINHINTKIPHPLLT 74

Query: 88  AASIGNVTIVEMLLSKGAD-----------------------VNLKNDGGRTALHYAASK 124
           A  IG   I+++L+  G D                       VN+K+   +T LHYA  K
Sbjct: 75  AIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKK 134

Query: 125 GWLKIVELLISRGAKINSKDKACNF 149
           G L+ +++L   GA +N +D    +
Sbjct: 135 GDLESIKMLFEYGADVNIEDDNGCY 159

Length = 434

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 39.5 bits (93), Expect = 1e-05
 Identities = 15/28 (53%), Positives = 19/28 (67%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           G T LH AA  G L++V+LL+  GA IN
Sbjct: 2   GNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies)

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)

Query: 4  DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLK---SLSLRNDDDRTLLHVAASCGHPEV 60
          D++    D  L  AA  G+    K      LL+    ++ ++ D  T LH+AA  G+ E+
Sbjct: 22 DVNLGDTDTALHLAARNGNLEIVK-----LLLEHGADVNAKDKDGNTALHLAARNGNLEI 76

Query: 61 VEILLSVDESANVVN 75
          V++LL      N+ +
Sbjct: 77 VKLLLEHGADINLKD 91

Length = 91

>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies)

 Score = 39.1 bits (92), Expect = 3e-05
 Identities = 17/35 (48%), Positives = 23/35 (65%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
           GRTALH AA  G L++V+ L+ +G  IN  D+  N
Sbjct: 1   GRTALHKAAISGRLELVKYLLEKGVDINRTDEDGN 35

Length = 54

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 42.6 bits (100), Expect = 3e-05
 Identities = 23/60 (38%), Positives = 34/60 (56%), Gaps = 1/60 (1%)

Query: 86  HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             AAS G+     +LL+ GAD N ++  GRT LH A + G +++V +L+  GA     DK
Sbjct: 88  QLAAS-GDAVGARILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDK 146

Length = 664

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 38.9 bits (91), Expect = 5e-05
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)

Query: 100 LLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
           LL  G  D+N  +  G T LH AA  G L++V+ L+  G  +N +D    
Sbjct: 1   LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGL 50

Length = 56

>gnl|CDD|165154 PHA02791, PHA02791, ankyrin-like protein; Provisional

 Score = 41.2 bits (96), Expect = 6e-05
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G ++ V+L + +  ++
Sbjct: 64  PLHQAATLEDTKIVKILLFSGMDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRL 120

Length = 284

>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional

 Score = 41.2 bits (97), Expect = 7e-05
 Identities = 25/82 (30%), Positives = 37/82 (45%), Gaps = 9/82 (10%)

Query: 41  RNDDDRTLLHVAA---SCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTI 96
            +    T LH  A   SC    V+ +L+     A + +NA +  G  P+H AA   N   
Sbjct: 218 TDMLGNTPLHSMATGSSCKRSLVLPLLI-----AGISINARNRYGQTPLHYAAVFNNPRA 272

Query: 97  VEMLLSKGADVNLKNDGGRTAL 118
              L++ GAD+N  +  G T L
Sbjct: 273 CRRLIALGADINAVSSDGNTPL 294

Length = 471

>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat

 Score = 37.5 bits (88), Expect = 8e-05
 Identities = 14/32 (43%), Positives = 18/32 (56%)

Query: 44 DDRTLLHVAASCGHPEVVEILLSVDESANVVN 75
          D  T LH+AA  GH EVV++LL      N  +
Sbjct: 1  DGNTPLHLAARNGHLEVVKLLLEAGADVNARD 32

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Repeats 13-24 are especially active, with known sites of interaction for the Na/K ATPase, Cl/HCO(3) anion exchanger, voltage-gated sodium channel, clathrin heavy chain and L1 family cell adhesion molecules. The ANK repeats are found to form a contiguous spiral stack such that ion transporters like the anion exchanger associate in a large central cavity formed by the ANK repeat spiral, while clathrin and cell adhesion molecules associate with specific regions outside this cavity. Length = 33

>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction only]

 Score = 40.2 bits (93), Expect = 1e-04
 Identities = 25/73 (34%), Positives = 40/73 (54%), Gaps = 3/73 (4%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           LR++D  T LH AA  G  ++VE+LL   E+    N+ +  G   +  AA  G + +V++
Sbjct: 142 LRDEDGNTPLHWAALNGDADIVELLL---EAGADPNSRNSYGVTALDPAAKNGRIELVKL 198

Query: 100 LLSKGADVNLKND 112
           LL KG  ++L   
Sbjct: 199 LLDKGLHLSLLKF 211

Length = 235

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 40.4 bits (94), Expect = 2e-04
 Identities = 35/112 (31%), Positives = 61/112 (54%), Gaps = 5/112 (4%)

Query: 33  QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92
           +L  +++ R+  D+T +H AA   +  ++  LL  D  A++  A+ ++    +H A    
Sbjct: 363 ELGANVNARDYCDKTPIHYAAVRNNVVIINTLL--DYGADI-EALSQKIGTALHFALCGT 419

Query: 93  N-VTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINS 142
           N    V+ L+ +GA+VN KN    T LHYA  K   L ++E+L+  GA +N+
Sbjct: 420 NPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNA 471

Length = 682

>gnl|CDD|140343 PTZ00322, PTZ00322, 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

 Score = 39.5 bits (92), Expect = 3e-04
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 3/62 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D RT LH+A + GH +VV +LL   E       +D++G  P+  A   G   +V++L
Sbjct: 111 RDYDGRTPLHIACANGHVQVVRVLL---EFGADPTLLDKDGKTPLELAEENGFREVVQLL 167

Query: 101 LS 102
             
Sbjct: 168 SR 169

Length = 664

>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 20/95 (21%), Positives = 44/95 (46%), Gaps = 7/95 (7%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIG---NVTIVEMLLSKGADVNLKNDGGR 115
           E+++ L  ++  A+V     +   + +H   S        I+++L+  G+ +  +++ G+
Sbjct: 67  EILKFL--IENGADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGK 124

Query: 116 TALHYAASKGWLKI--VELLISRGAKINSKDKACN 148
             LH       ++I  ++LLI  G    +KD   N
Sbjct: 125 NLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNN 159

Length = 209

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 35.6 bits (83), Expect = 4e-04
 Identities = 16/28 (57%), Positives = 21/28 (75%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKIN 141
           GRT LH AA  G L++V+LL+ +GA IN
Sbjct: 2   GRTPLHLAAENGNLEVVKLLLDKGADIN 29

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies)

 Score = 35.8 bits (83), Expect = 6e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86
           + +  T LH+AA  G  E+V+ LL      N+    D +G   + 
Sbjct: 12 TDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL---RDSDGLTALD 54

Length = 56

>gnl|CDD|197603 smart00248, ANK, ankyrin repeats

 Score = 34.9 bits (81), Expect = 7e-04
 Identities = 15/30 (50%), Positives = 22/30 (73%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           +G  P+H AA  GN+ +V++LL KGAD+N 
Sbjct: 1   DGRTPLHLAAENGNLEVVKLLLDKGADINA 30

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure. Length = 30

>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional

 Score = 37.7 bits (87), Expect = 0.001
 Identities = 17/62 (27%), Positives = 31/62 (50%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           +G +PI  A    +   +++L+  GA  ++K     + LH A  +G +K VE L+  G  
Sbjct: 34  DGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKF 93

Query: 140 IN 141
            +
Sbjct: 94  AD 95

Length = 413

>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat

 Score = 34.2 bits (79), Expect = 0.001
 Identities = 14/29 (48%), Positives = 21/29 (72%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           +G  P+H AA  GN+ +V++LL  GAD+N
Sbjct: 1   DGNTPLHLAARNGNLELVKLLLEHGADIN 29

Ankyrins are multifunctional adaptors that link specific proteins to the membrane-associated, spectrin- actin cytoskeleton. This repeat-domain is a 'membrane-binding' domain of up to 24 repeated units, and it mediates most of the protein's binding activities. Length = 30

>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 13/134 (9%)

Query: 22  DSSTFKSLSKQQLLKSL-------SLRNDDD--RTLLHVAASCGHPEVVEILLSVDESAN 72
           D S  K++  + L  SL       S+ + DD   T LH A+    P +  ++  + E   
Sbjct: 241 DLSLLKAIRNEDLETSLLLYDAGFSVNSIDDCKNTPLHHASQA--PSLSRLVPKLLERGA 298

Query: 73  VVNAVDEEGWAPIHSAASIG-NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK-IV 130
            VNA + +G  P++  A  G +   +  L+  GADVN  +    T LH A++    K IV
Sbjct: 299 DVNAKNIKGETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIV 358

Query: 131 ELLISRGAKINSKD 144
             L+  GA +N++D
Sbjct: 359 ITLLELGANVNARD 372

Length = 682

>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 18/60 (30%), Positives = 35/60 (58%), Gaps = 2/60 (3%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +N +D+ G   +H A      ++V +LL  G+DVN++++ G T +  A ++   + +ELL
Sbjct: 445 INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVNIRSNNGYTCIAIAINES--RNIELL 502

Length = 661

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	152
KOG4412	226	consensus 26S proteasome regulatory complex, subun	100.0
KOG4412	226	consensus 26S proteasome regulatory complex, subun	99.97
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.96
PHA02859	209	ankyrin repeat protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02791	284	ankyrin-like protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02874	434	ankyrin repeat protein; Provisional	99.96
PHA02878	477	ankyrin repeat protein; Provisional	99.96
PHA03100	480	ankyrin repeat protein; Provisional	99.96
PHA02875	413	ankyrin repeat protein; Provisional	99.96
PHA02946	446	ankyin-like protein; Provisional	99.96
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02859	209	ankyrin repeat protein; Provisional	99.95
PHA03100	480	ankyrin repeat protein; Provisional	99.95
KOG0509	600	consensus Ankyrin repeat and DHHC-type Zn-finger d	99.95
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	99.95
PHA02743	166	Viral ankyrin protein; Provisional	99.95
PHA03095	471	ankyrin-like protein; Provisional	99.95
PHA02798	489	ankyrin-like protein; Provisional	99.95
PHA02989	494	ankyrin repeat protein; Provisional	99.94
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.94
KOG0510	929	consensus Ankyrin repeat protein [General function	99.94
PHA03095	471	ankyrin-like protein; Provisional	99.94
PHA02876	682	ankyrin repeat protein; Provisional	99.94
PHA02946	446	ankyin-like protein; Provisional	99.93
PHA02741	169	hypothetical protein; Provisional	99.93
PHA02795	437	ankyrin-like protein; Provisional	99.93
PHA02876	682	ankyrin repeat protein; Provisional	99.93
PHA02917	661	ankyrin-like protein; Provisional	99.93
PLN03192	823	Voltage-dependent potassium channel; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
KOG0510	929	consensus Ankyrin repeat protein [General function	99.92
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.92
PHA02736	154	Viral ankyrin protein; Provisional	99.92
KOG0508	615	consensus Ankyrin repeat protein [General function	99.92
PHA02798	489	ankyrin-like protein; Provisional	99.91
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.91
PHA02989	494	ankyrin repeat protein; Provisional	99.91
KOG0502	296	consensus Integral membrane ankyrin-repeat protein	99.91
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.9
KOG0514	452	consensus Ankyrin repeat protein [General function	99.9
PHA02741	169	hypothetical protein; Provisional	99.9
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.9
PHA02884	300	ankyrin repeat protein; Provisional	99.9
PHA02795	437	ankyrin-like protein; Provisional	99.89
PHA02730	672	ankyrin-like protein; Provisional	99.88
PHA02884	300	ankyrin repeat protein; Provisional	99.88
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	99.88
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.87
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.87
PHA02917	661	ankyrin-like protein; Provisional	99.86
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.86
PHA02743	166	Viral ankyrin protein; Provisional	99.86
PHA02730	672	ankyrin-like protein; Provisional	99.85
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	99.85
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	99.84
PHA02736	154	Viral ankyrin protein; Provisional	99.84
KOG0512	228	consensus Fetal globin-inducing factor (contains a	99.84
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.84
KOG0514	452	consensus Ankyrin repeat protein [General function	99.82
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	99.8
KOG0505	527	consensus Myosin phosphatase, regulatory subunit [	99.79
PHA02792	631	ankyrin-like protein; Provisional	99.79
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.78
TIGR00870	743	trp transient-receptor-potential calcium channel p	99.77
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.76
KOG0507	854	consensus CASK-interacting adaptor protein (caskin	99.76
PHA02792	631	ankyrin-like protein; Provisional	99.76
KOG4214	117	consensus Myotrophin and similar proteins [Transcr	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.75
KOG3676	782	consensus Ca2+-permeable cation channel OSM-9 and	99.74
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.73
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.7
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	99.65
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	99.64
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.64
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.62
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.62
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.61
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	99.58
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	99.55
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	99.55
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.51
KOG1710	396	consensus MYND Zn-finger and ankyrin repeat protei	99.39
KOG4369	2131	consensus RTK signaling protein MASK/UNC-44 [Signa	99.34
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.22
KOG0783	1267	consensus Uncharacterized conserved protein, conta	99.2
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	99.19
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.18
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	99.16
PF13606	30	Ank_3: Ankyrin repeat	99.1
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	99.05
KOG0506	622	consensus Glutaminase (contains ankyrin repeat) [A	99.01
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.94
KOG0818	669	consensus GTPase-activating proteins of the GIT fa	98.93
PF13606	30	Ank_3: Ankyrin repeat	98.92
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	98.91
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	98.88
KOG0522	560	consensus Ankyrin repeat protein [General function	98.87
KOG0522	560	consensus Ankyrin repeat protein [General function	98.87
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	98.87
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.86
KOG0511	516	consensus Ankyrin repeat protein [General function	98.54
KOG0511	516	consensus Ankyrin repeat protein [General function	98.51
KOG2384	223	consensus Major histocompatibility complex protein	98.41
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.37
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.31
KOG0521	785	consensus Putative GTPase activating proteins (GAP	98.24
KOG2384	223	consensus Major histocompatibility complex protein	98.12
KOG0520	975	consensus Uncharacterized conserved protein, conta	98.09
KOG3609	822	consensus Receptor-activated Ca2+-permeable cation	97.97
KOG2505	591	consensus Ankyrin repeat protein [General function	97.89
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.59
KOG2505	591	consensus Ankyrin repeat protein [General function	97.44
smart00248	30	ANK ankyrin repeats. Ankyrin repeats are about 33	97.29
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	97.2
PF03158	192	DUF249: Multigene family 530 protein; InterPro: IP	96.5
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	95.92
PF06128	284	Shigella_OspC: Shigella flexneri OspC protein; Int	95.33
PF11929	76	DUF3447: Domain of unknown function (DUF3447); Int	93.74

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=1.7e-35  Score=177.47  Aligned_cols=143  Identities=36%  Similarity=0.421  Sum_probs=133.3

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCccccccCCCCChh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAP   84 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~t~   84 (152)
                      ++..|.+|||+|+..|..+++.+|+++ +...++.+|..|+||||.|+..|+.++++.|+.+ +.+   ++.....|.|+
T Consensus        34 ~dqD~Rt~LHwa~S~g~~eiv~fLlsq-~nv~~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~~ad---vna~tn~G~T~  109 (226)
T KOG4412|consen   34 DDQDGRTPLHWACSFGHVEIVYFLLSQ-PNVKPDDKDDAGWTPLHIAASNGNDEVVKELLNRSGAD---VNATTNGGQTC  109 (226)
T ss_pred             ccccCCceeeeeeecCchhHHHHHHhc-CCCCCCCccccCCchhhhhhhcCcHHHHHHHhcCCCCC---cceecCCCcce
Confidence            445899999999999999999999984 3567888899999999999999999999999987 555   67778899999


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||+|+..+..+++++|++.|+.++.+|..|+||||-|+..|.++++++|+..|+.++..|+.|.||||
T Consensus       110 LHyAagK~r~eIaqlLle~ga~i~~kD~~~qtplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~  177 (226)
T KOG4412|consen  110 LHYAAGKGRLEIAQLLLEKGALIRIKDKQGQTPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLH  177 (226)
T ss_pred             ehhhhcCChhhHHHHHHhcCCCCcccccccCchhHHHHhccchhhHHHHHhcCCCCCcccccCccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999997

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=99.97  E-value=2.4e-31  Score=159.69  Aligned_cols=144  Identities=28%  Similarity=0.416  Sum_probs=135.7

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      +|-.+..|-+|||+|+..|+.+.|+.|+.+. +.+++..+..|.|+||||+-.++.++.++|+.+++.   ++.+|..|.
T Consensus        65 ~ddkDdaGWtPlhia~s~g~~evVk~Ll~r~-~advna~tn~G~T~LHyAagK~r~eIaqlLle~ga~---i~~kD~~~q  140 (226)
T KOG4412|consen   65 PDDKDDAGWTPLHIAASNGNDEVVKELLNRS-GADVNATTNGGQTCLHYAAGKGRLEIAQLLLEKGAL---IRIKDKQGQ  140 (226)
T ss_pred             CCCccccCCchhhhhhhcCcHHHHHHHhcCC-CCCcceecCCCcceehhhhcCChhhHHHHHHhcCCC---CcccccccC
Confidence            4566778999999999999999999999985 589999999999999999999999999999999877   788899999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      ||||.|+.-|.++++++|+..|+.++.+|..|+||||.|.-.++.++...|+++|++.+..|+.| ||+
T Consensus       141 tplHRAAavGklkvie~Li~~~a~~n~qDk~G~TpL~~al~e~~~d~a~lLV~~gAd~~~edke~-t~~  208 (226)
T KOG4412|consen  141 TPLHRAAAVGKLKVIEYLISQGAPLNTQDKYGFTPLHHALAEGHPDVAVLLVRAGADTDREDKEG-TAL  208 (226)
T ss_pred             chhHHHHhccchhhHHHHHhcCCCCCcccccCccHHHHHHhccCchHHHHHHHhccceeeccccC-chH
Confidence            99999999999999999999999999999999999999988899999999999999999999988 876

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=172.39  Aligned_cols=147  Identities=25%  Similarity=0.284  Sum_probs=88.6

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  ..++..+..+.||||.|+..|+.++++.++..+...  .+..+..|
T Consensus        27 ~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~g--a~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~~~--~~~~~~~g  102 (413)
T PHA02875         27 NPNFEIYDGISPIKLAMKFRDSEAIKLLMKHG--AIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFA--DDVFYKDG  102 (413)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCccccCCCcccHHHHHHHCCCHHHHHHHHHcCCcc--cccccCCC
Confidence            45555666777888888888888887777766  334444445556666666666666666665554432  12223445


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus       103 ~tpL~~A~~~~~~~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~  173 (413)
T PHA02875        103 MTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLI  173 (413)
T ss_pred             CCHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHH
Confidence            56666666666666666666666666555555666666666666666666666666666666666666654

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.1e-28  Score=175.14  Aligned_cols=144  Identities=27%  Similarity=0.326  Sum_probs=132.6

Q ss_pred             CcCcCCCC-CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCC
Q 031838            2 DMDIDQTI-KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus         2 ~~~~~~~~-~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      |++..+.. |.||||.|+..|+.+.++.|++.+  .+++.++..|.||||.|+..++.+++++|++.|++   ++.++..
T Consensus       159 din~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~g--ad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~---in~~d~~  233 (477)
T PHA02878        159 DINMKDRHKGNTALHYATENKDQRLTELLLSYG--ANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGAS---TDARDKC  233 (477)
T ss_pred             CCCccCCCCCCCHHHHHHhCCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCC---CCCCCCC
Confidence            56667777 999999999999999999999987  67888999999999999999999999999999888   6778899


Q ss_pred             CChhhHHHHhc-CCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           81 GWAPIHSAASI-GNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~-~~~~~~~~l~~~~~~~~~~~~-~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |.||||+|+.. ++.+++++|++.|++++..+. .|.||||+|  .++.+++++|+++|++++..+..|.||||
T Consensus       234 g~TpLh~A~~~~~~~~iv~~Ll~~gadvn~~~~~~g~TpLh~A--~~~~~~v~~Ll~~gadin~~d~~g~TpL~  305 (477)
T PHA02878        234 GNTPLHISVGYCKDYDILKLLLEHGVDVNAKSYILGLTALHSS--IKSERKLKLLLEYGADINSLNSYKLTPLS  305 (477)
T ss_pred             CCCHHHHHHHhcCCHHHHHHHHHcCCCCCccCCCCCCCHHHHH--ccCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99999999975 689999999999999998875 799999999  56789999999999999999999999986

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.96  E-value=4.2e-29  Score=173.81  Aligned_cols=146  Identities=31%  Similarity=0.377  Sum_probs=103.4

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      +++.++..|-+.||+|+..++++.+++|++.+  .+++... .-+.||||||+++|+..++.+|++.|++   .+..|..
T Consensus        70 ~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~g--advn~~gG~l~stPLHWAar~G~~~vv~lLlqhGAd---pt~~D~~  144 (600)
T KOG0509|consen   70 SVNNPDREGVTLLHWAAINNRLDVARYLISHG--ADVNAIGGVLGSTPLHWAARNGHISVVDLLLQHGAD---PTLKDKQ  144 (600)
T ss_pred             CCCCCCcCCccceeHHHHcCcHHHHHHHHHcC--CCccccCCCCCCCcchHHHHcCcHHHHHHHHHcCCC---CceecCC
Confidence            44555666777777777777777777777766  4555555 4466777777777777777777777776   4556677


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcc-ccccccCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~  152 (152)
                      |.+++|.|+.+++.-++.+++..+++++.+|..|+|||++|+..+....+..|++.|+.+...| +.|.||||
T Consensus       145 G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLmwAaykg~~~~v~~LL~f~a~~~~~d~~~g~TpLH  217 (600)
T KOG0509|consen  145 GLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLMWAAYKGFALFVRRLLKFGASLLLTDDNHGNTPLH  217 (600)
T ss_pred             CCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHHHHHHhcccHHHHHHHHhcccccccccccCCchHH
Confidence            7777777777777777777777777777777777777777777776665677777777777776 77777776

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.96  E-value=2.6e-28  Score=156.06  Aligned_cols=144  Identities=21%  Similarity=0.298  Sum_probs=119.2

Q ss_pred             CcCCCCCChHHHHHHHhC--CHHHHHHHHHhhcccccccCC-CCCchHHHHHHHc---CCHHHHHHHHhcCCCCcccccc
Q 031838            4 DIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      +..+..|.||||.|+..+  +.++++.|++.+  .+++.++ ..|.||||+|+..   +..+++++|++.+.+   ++.+
T Consensus        45 n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~g--advn~~~~~~g~TpLh~a~~~~~~~~~eiv~~Ll~~gad---in~~  119 (209)
T PHA02859         45 NDCNDLYETPIFSCLEKDKVNVEILKFLIENG--ADVNFKTRDNNLSALHHYLSFNKNVEPEILKILIDSGSS---ITEE  119 (209)
T ss_pred             hccCccCCCHHHHHHHcCCCCHHHHHHHHHCC--CCCCccCCCCCCCHHHHHHHhCccccHHHHHHHHHCCCC---CCCc
Confidence            455677889999998754  889999999887  5777775 4788999987754   368899999988887   6777


Q ss_pred             CCCCChhhHHHHh--cCCHHHHHHHHHcCCCCcccCCCCCcHHHH-HHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           78 DEEGWAPIHSAAS--IGNVTIVEMLLSKGADVNLKNDGGRTALHY-AASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        78 ~~~~~t~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~-a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..|.||||.|+.  .++.+++++|++.|++++.+|..|.||+|. +...++.+++++|+++|++++.+|..|.||||
T Consensus       120 d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh~~a~~~~~~~iv~~Ll~~Gadi~~~d~~g~tpl~  197 (209)
T PHA02859        120 DEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILYSYILFHSDKKIFDFLTSLGIDINETNKSGYNCYD  197 (209)
T ss_pred             CCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHHHHHHhcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            8889999998875  467899999999999999999999999985 45677889999999999999999999999985

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=3.7e-28  Score=160.80  Aligned_cols=135  Identities=20%  Similarity=0.168  Sum_probs=66.0

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCC-chHHHHHHHcCCHHHHHHHHhcCCCCccccccC-CCC
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-RTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEG   81 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g-~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~   81 (152)
                      +..+..|.||||.|+..|+.++++.|++.+  .+++.++..| .||||+|+..++.+++++|++.+.+.     .+ ..|
T Consensus        88 n~~d~~G~TpLh~Aa~~g~~eivk~Ll~~g--adin~~~~~g~~TpL~~Aa~~g~~eivk~LL~~~~~~-----~d~~~g  160 (284)
T PHA02791         88 SQFDDKGNTALYYAVDSGNMQTVKLFVKKN--WRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPST-----FDLAIL  160 (284)
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCcHHHHHHHHcCCHHHHHHHHhcCCcc-----cccccC
Confidence            334444444555555555555554444443  2333333333 24455555545555555444433211     01 124


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcH-HHHHHHcCCHHHHHHHHhcCCCCCCccc
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA-LHYAASKGWLKIVELLISRGAKINSKDK  145 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~p-l~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (152)
                      .||||+|+..|+.+++++|+++|++++.++..|.+| ||+|+..++.+++++|+++|++++.+|.
T Consensus       161 ~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~~Aa~~~~~e~v~lLl~~Ga~in~~~~  225 (284)
T PHA02791        161 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKLAIDNKDLEMLQALFKYDINIYSVNL  225 (284)
T ss_pred             ccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHHHHHHcCCHHHHHHHHHCCCCCccCcc
Confidence            555555555555555555555555555555555544 5555555555555555555555555555

>PHA02791 ankyrin-like protein; Provisional

Probab=99.96  E-value=6.1e-28  Score=159.76  Aligned_cols=138  Identities=18%  Similarity=0.169  Sum_probs=122.8

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC-ChhhH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIH   86 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~t~l~   86 (152)
                      ..+.||||.|+..|+.++++.|++.+  .+++.++..|+||||+|+..++.+++++|+..+.+   ++.++..| .||||
T Consensus        59 ~d~~TpLh~Aa~~g~~eiV~lLL~~G--advn~~d~~G~TpLh~Aa~~g~~eivk~Ll~~gad---in~~~~~g~~TpL~  133 (284)
T PHA02791         59 LENEFPLHQAATLEDTKIVKILLFSG--MDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFY  133 (284)
T ss_pred             CCCCCHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---cCccCCCCCcHHHH
Confidence            34789999999999999999999977  67888999999999999999999999999998887   56666666 48999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccccc-CC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFL-YQ  152 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~  152 (152)
                      .|+..++.+++++|++.+.+..  + ..|.||||+|+..|+.+++++|+++|++++.++..|.|| ||
T Consensus       134 ~Aa~~g~~eivk~LL~~~~~~~--d~~~g~TpLh~Aa~~g~~eiv~lLL~~gAd~n~~d~~g~t~~L~  199 (284)
T PHA02791        134 HAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK  199 (284)
T ss_pred             HHHHcCCHHHHHHHHhcCCccc--ccccCccHHHHHHHcCCHHHHHHHHHCCCCCCcccCCCCChHHH
Confidence            9999999999999999865432  2 247899999999999999999999999999999999987 65

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=4.8e-28  Score=170.07  Aligned_cols=148  Identities=29%  Similarity=0.390  Sum_probs=106.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhc---------------------ccccccCCCCCchHHHHHHHcCCHHH
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQL---------------------LKSLSLRNDDDRTLLHVAASCGHPEV   60 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~---------------------~~~~~~~~~~g~t~l~~a~~~~~~~~   60 (152)
                      |++..+..+.+||+.|+..|+.+++++|++.+.                     +.+++.++..|.||||+|+..++.++
T Consensus        60 ~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~  139 (434)
T PHA02874         60 DINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKDMIKTILDCGIDVNIKDAELKTFLHYAIKKGDLES  139 (434)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHHHHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHH
Confidence            344455556666666666666666666665432                     12344566677788888888778888


Q ss_pred             HHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 031838           61 VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (152)
Q Consensus        61 ~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~  140 (152)
                      +++|+..+.+   .+.++..|.||||+|+..++.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|+++
T Consensus       140 v~~Ll~~gad---~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~~~~~g~tpL~~A~~~g~~~iv~~Ll~~g~~i  216 (434)
T PHA02874        140 IKMLFEYGAD---VNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGNHI  216 (434)
T ss_pred             HHHHHhCCCC---CCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCC
Confidence            8877777766   5556677778888888888888888888777777777777788888888888888888888888777


Q ss_pred             CCccccccccCC
Q 031838          141 NSKDKACNFLYQ  152 (152)
Q Consensus       141 ~~~~~~~~t~l~  152 (152)
                      +.++..|.||||
T Consensus       217 ~~~~~~g~TpL~  228 (434)
T PHA02874        217 MNKCKNGFTPLH  228 (434)
T ss_pred             cCCCCCCCCHHH
Confidence            777777777765

>PHA02874 ankyrin repeat protein; Provisional

Probab=99.96  E-value=6.9e-28  Score=169.29  Aligned_cols=148  Identities=25%  Similarity=0.383  Sum_probs=134.6

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc---------
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---------   73 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------   73 (152)
                      ++..+..+.|||+.|++.|+.++|++|++.+  .+++..+..|.|||+.|+..++.+++++|++.|.+...         
T Consensus        28 ~n~~~~~~~tpL~~A~~~g~~~iv~~Ll~~G--a~~n~~~~~~~t~L~~A~~~~~~~iv~~Ll~~g~~~~~~~~~~~~~~  105 (434)
T PHA02874         28 INISVDETTTPLIDAIRSGDAKIVELFIKHG--ADINHINTKIPHPLLTAIKIGAHDIIKLLIDNGVDTSILPIPCIEKD  105 (434)
T ss_pred             CCCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcchhccCCHH
Confidence            4556678899999999999999999999987  57778888899999999999999999999987754321         


Q ss_pred             -----------ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 031838           74 -----------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (152)
Q Consensus        74 -----------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~  142 (152)
                                 ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.
T Consensus       106 ~i~~ll~~g~d~n~~~~~g~T~Lh~A~~~~~~~~v~~Ll~~gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~g~~~n~  185 (434)
T PHA02874        106 MIKTILDCGIDVNIKDAELKTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYANV  185 (434)
T ss_pred             HHHHHHHCcCCCCCCCCCCccHHHHHHHCCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCCCCC
Confidence                       445677899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccCC
Q 031838          143 KDKACNFLYQ  152 (152)
Q Consensus       143 ~~~~~~t~l~  152 (152)
                      .+..|.||||
T Consensus       186 ~~~~g~tpL~  195 (434)
T PHA02874        186 KDNNGESPLH  195 (434)
T ss_pred             CCCCCCCHHH
Confidence            9999999986

>PHA02878 ankyrin repeat protein; Provisional

Probab=99.96  E-value=8.5e-28  Score=170.54  Aligned_cols=139  Identities=26%  Similarity=0.326  Sum_probs=85.6

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHH-----------------------
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL-----------------------   65 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll-----------------------   65 (152)
                      .+.+|||.|+..|+.+.|++|++.+  .+++.++..|.||||+||..|+.++++.++                       
T Consensus        36 ~~~tPLh~A~~~g~~e~vk~Ll~~g--advn~~d~~g~TpLh~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~l~~a~~~~~  113 (477)
T PHA02878         36 IPFIPLHQAVEARNLDVVKSLLTRG--HNVNQPDHRDLTPLHIICKEPNKLGMKEMIRSINKCSVFYTLVAIKDAFNNRN  113 (477)
T ss_pred             cCcchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHCccHhHHHHHHHHHhccccccchhhHHHHHHcCC
Confidence            4556666666666666666666655  455566666666666666654443333222                       


Q ss_pred             -----------------------------------------hcCCCCccccccCCC-CChhhHHHHhcCCHHHHHHHHHc
Q 031838           66 -----------------------------------------SVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSK  103 (152)
Q Consensus        66 -----------------------------------------~~~~~~~~~~~~~~~-~~t~l~~a~~~~~~~~~~~l~~~  103 (152)
                                                               +.|++   ++..+.. |.||||+|+..|+.+++++|++.
T Consensus       114 ~ei~~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~Ll~~gad---in~~~~~~g~tpLh~A~~~~~~~iv~~Ll~~  190 (477)
T PHA02878        114 VEIFKIILTNRYKNIQTIDLVYIDKKSKDDIIEAEITKLLLSYGAD---INMKDRHKGNTALHYATENKDQRLTELLLSY  190 (477)
T ss_pred             HHHHHHHHhCcccCcccCcHHHHhhccchhhHHHHHHHHHHHcCCC---CCccCCCCCCCHHHHHHhCCCHHHHHHHHHC
Confidence                                                     22222   2333444 66666666666666666666666


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       104 ~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |++++..+..|.||||.|+..++.+++++|+++|++++.++..|+||||
T Consensus       191 gad~n~~d~~g~tpLh~A~~~~~~~iv~~Ll~~ga~in~~d~~g~TpLh  239 (477)
T PHA02878        191 GANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLH  239 (477)
T ss_pred             CCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            6666666666666666666666666666666666666666666666664

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.96  E-value=7.8e-28  Score=170.95  Aligned_cols=146  Identities=29%  Similarity=0.359  Sum_probs=110.9

Q ss_pred             CcCcCCCCCChHHHHHHHhC--CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCC
Q 031838            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE   79 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~   79 (152)
                      |++..+..|.++||.|+..|  +.++++.|++.+  .+++.++..|.||||+|+..++.+++++|++.|++   .+..+.
T Consensus       133 ~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g--~din~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~---~~~~~~  207 (480)
T PHA03100        133 NVNIKNSDGENLLHLYLESNKIDLKILKLLIDKG--VDINAKNRYGYTPLHIAVEKGNIDVIKFLLDNGAD---INAGDI  207 (480)
T ss_pred             CCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCC--CCcccccCCCCCHHHHHHHhCCHHHHHHHHHcCCC---ccCCCC
Confidence            44555666777777777777  777777777766  45566666777777777777777777777777666   444445


Q ss_pred             CC------ChhhHHHHhcCC--HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           80 EG------WAPIHSAASIGN--VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        80 ~~------~t~l~~a~~~~~--~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      .+      .||+|.|+..++  .+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++..+..|.|||
T Consensus       208 ~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~TpL~~A~~~~~~~iv~~Ll~~gad~n~~d~~g~tpl  287 (480)
T PHA03100        208 ETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPL  287 (480)
T ss_pred             CCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCcHH
Confidence            55      677777777777  8888888888888888888888888888888888888888888888888888888887


Q ss_pred             C
Q 031838          152 Q  152 (152)
Q Consensus       152 ~  152 (152)
                      |
T Consensus       288 ~  288 (480)
T PHA03100        288 H  288 (480)
T ss_pred             H
Confidence            5

>PHA02875 ankyrin repeat protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=166.69  Aligned_cols=144  Identities=22%  Similarity=0.327  Sum_probs=108.9

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      +.....+.+|||.|+..|+.+.+++|++.+. ...+..+..|.||||+|+..++.+++++|++.|++   .+.++..|.|
T Consensus        62 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~~~-~~~~~~~~~g~tpL~~A~~~~~~~iv~~Ll~~gad---~~~~~~~g~t  137 (413)
T PHA02875         62 DVKYPDIESELHDAVEEGDVKAVEELLDLGK-FADDVFYKDGMTPLHLATILKKLDIMKLLIARGAD---PDIPNTDKFS  137 (413)
T ss_pred             cccCCCcccHHHHHHHCCCHHHHHHHHHcCC-cccccccCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCCCCC
Confidence            3444567788888888888888888887662 22233455678888888888888888888887776   5556677888


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccc-ccC
Q 031838           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN-FLY  151 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l  151 (152)
                      |||.|+..|+.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++..+..|. ||+
T Consensus       138 pLh~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~TpL~~A~~~g~~eiv~~Ll~~ga~~n~~~~~~~~t~l  206 (413)
T PHA02875        138 PLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGDIAICKMLLDSGANIDYFGKNGCVAAL  206 (413)
T ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCcCCCCCCchHH
Confidence            88888888888888888888888888888888888888888888888888888888888777764 444

>PHA02946 ankyin-like protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=167.30  Aligned_cols=146  Identities=16%  Similarity=0.195  Sum_probs=96.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccccCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDE   79 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~   79 (152)
                      |++..+..|.||||.|++.|+.++++.|++.+  .+++.++..|.||||+|+..+  ..+++++|+++|++..  ...+.
T Consensus        64 dvn~~d~~G~TpLh~Aa~~g~~eiv~lLL~~G--Adin~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~Gadin--~~~d~  139 (446)
T PHA02946         64 SPNETDDDGNYPLHIASKINNNRIVAMLLTHG--ADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGAKIN--NSVDE  139 (446)
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCcc--cccCC
Confidence            67888899999999999999999999999987  678889999999999998766  4788999998887632  12344


Q ss_pred             CCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCccccccccCC
Q 031838           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|.|||+ |+..++.+++++|++.|++++..|..|.||||.|+..+  ..+++++|+++|++++.+|..|+||||
T Consensus       140 ~g~tpL~-aa~~~~~~vv~~Ll~~gad~~~~d~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH  213 (446)
T PHA02946        140 EGCGPLL-ACTDPSERVFKKIMSIGFEARIVDKFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLH  213 (446)
T ss_pred             CCCcHHH-HHHCCChHHHHHHHhccccccccCCCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            5555554 33344455555555444444444444444444444322  234444444444444444444444443

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=2e-27  Score=172.94  Aligned_cols=146  Identities=20%  Similarity=0.189  Sum_probs=105.2

Q ss_pred             CcCcCCCCCChHHHHHHHhCC--HHHHHHHHHhhcccccccCCCCCchHHHHH---------------------------
Q 031838            2 DMDIDQTIKDKDLFKAAETGD--SSTFKSLSKQQLLKSLSLRNDDDRTLLHVA---------------------------   52 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a---------------------------   52 (152)
                      |++.++..|.||||.|++.|+  .++|+.|++.|  .+++.++..|.||||+|                           
T Consensus       204 DVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~G--ADVN~kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~  281 (764)
T PHA02716        204 NVNLQNNHLITPLHTYLITGNVCASVIKKIIELG--GDMDMKCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNI  281 (764)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccc
Confidence            566667777778888777774  37777777776  56777777777777754                           


Q ss_pred             ----------HHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh--cCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 031838           53 ----------ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS--IGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (152)
Q Consensus        53 ----------~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~--~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~  120 (152)
                                +..|+.+++++|++.|++   ++.+|..|.||||+|+.  .++.+++++|++.|++++.+|..|.||||+
T Consensus       282 ~~~L~~~i~AA~~g~leiVklLLe~GAd---IN~kD~~G~TPLH~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH~  358 (764)
T PHA02716        282 PMILHSYITLARNIDISVVYSFLQPGVK---LHYKDSAGRTCLHQYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLHT  358 (764)
T ss_pred             hhhhHHHHHHHHcCCHHHHHHHHhCCCc---eeccCCCCCCHHHHHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHHH
Confidence                      233556677777776666   56667777888877653  346777888887788887777778888887


Q ss_pred             HHH--------------cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          121 AAS--------------KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       121 a~~--------------~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+.              .++.+++++|+++|++++.++..|.||||
T Consensus       359 A~~~lav~~~ld~~~~~~~~~eVVklLL~~GADIn~kn~~G~TPLh  404 (764)
T PHA02716        359 YLSMLSVVNILDPETDNDIRLDVIQCLISLGADITAVNCLGYTPLT  404 (764)
T ss_pred             HHHhhhhhccccccccccChHHHHHHHHHCCCCCCCcCCCCCChHH
Confidence            654              25677888888888888888888888875

>PHA02859 ankyrin repeat protein; Provisional

Probab=99.95  E-value=5.8e-27  Score=149.82  Aligned_cols=138  Identities=20%  Similarity=0.252  Sum_probs=121.7

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccccC-CCCCh
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVD-EEGWA   83 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~-~~~~t   83 (152)
                      .+...+||+.|+..|+++.|+.|++.     ++..+..|.||||+|+..+  +.+++++|++.+++   ++.++ ..|.|
T Consensus        18 ~~~~~~pL~~A~~~~~~~~vk~Li~~-----~n~~~~~g~TpLh~a~~~~~~~~eiv~~Ll~~gad---vn~~~~~~g~T   89 (209)
T PHA02859         18 FYRYCNPLFYYVEKDDIEGVKKWIKF-----VNDCNDLYETPIFSCLEKDKVNVEILKFLIENGAD---VNFKTRDNNLS   89 (209)
T ss_pred             hhccCcHHHHHHHhCcHHHHHHHHHh-----hhccCccCCCHHHHHHHcCCCCHHHHHHHHHCCCC---CCccCCCCCCC
Confidence            34568999999999999999999874     3456788999999999865  89999999999988   56665 47999


Q ss_pred             hhHHHHhc---CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH--cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           84 PIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHYAAS--KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        84 ~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |||+|+..   ++.+++++|++.|++++.++..|.||||.|+.  .++.+++++|+++|++++.++..|.||||
T Consensus        90 pLh~a~~~~~~~~~eiv~~Ll~~gadin~~d~~G~TpLh~a~~~~~~~~~iv~~Li~~gadin~~d~~g~t~Lh  163 (209)
T PHA02859         90 ALHHYLSFNKNVEPEILKILIDSGSSITEEDEDGKNLLHMYMCNFNVRINVIKLLIDSGVSFLNKDFDNNNILY  163 (209)
T ss_pred             HHHHHHHhCccccHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccCCCCcHHH
Confidence            99998753   47999999999999999999999999999876  46799999999999999999999999986

>PHA03100 ankyrin repeat protein; Provisional

Probab=99.95  E-value=3.5e-27  Score=167.62  Aligned_cols=146  Identities=26%  Similarity=0.393  Sum_probs=119.0

Q ss_pred             CcCcCCCCCChHHHHHH--HhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCcccccc
Q 031838            2 DMDIDQTIKDKDLFKAA--ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      |++..+..|.|||+.|+  ..|+.+++++|++.+  .+++..+..|.||||+|+..+  +.+++++|++.|.+   ++.+
T Consensus        98 ~i~~~d~~g~tpL~~A~~~~~~~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~iv~~Ll~~g~d---in~~  172 (480)
T PHA03100         98 NVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNG--ANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVD---INAK  172 (480)
T ss_pred             CCCCCCCCCCchhhHHHhcccChHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCChHHHHHHHHHCCCC---cccc
Confidence            45566677888888888  888888888888876  566777778888888888888  88888888888776   5666


Q ss_pred             CCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCC------CcHHHHHHHcCC--HHHHHHHHhcCCCCCCccccccc
Q 031838           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG------RTALHYAASKGW--LKIVELLISRGAKINSKDKACNF  149 (152)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~------~~pl~~a~~~~~--~~~~~~Ll~~g~~~~~~~~~~~t  149 (152)
                      +..|.||||+|+..++.+++++|++.|++++..+..+      .+|+|.|+..++  .+++++|+++|++++.++..|.|
T Consensus       173 d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~iv~~Ll~~g~din~~d~~g~T  252 (480)
T PHA03100        173 NRYGYTPLHIAVEKGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNEITLEVVNYLLSYGVPINIKDVYGFT  252 (480)
T ss_pred             cCCCCCHHHHHHHhCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCcCcHHHHHHHHHcCCCCCCCCCCCCC
Confidence            6788888888888888888888888888888777777      788888888888  88888888888888888888888


Q ss_pred             cCC
Q 031838          150 LYQ  152 (152)
Q Consensus       150 ~l~  152 (152)
                      |||
T Consensus       253 pL~  255 (480)
T PHA03100        253 PLH  255 (480)
T ss_pred             HHH
Confidence            876

>KOG0509 consensus Ankyrin repeat and DHHC-type Zn-finger domain containing proteins [General function prediction only]

Probab=99.95  E-value=2.1e-27  Score=165.42  Aligned_cols=139  Identities=34%  Similarity=0.459  Sum_probs=129.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC-CCCChhhHHH
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSA   88 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~t~l~~a   88 (152)
                      ....++.|++.|+++.|+.+++.. +..++..|.+|.++||||+.+++.+++++++++++++   |..+ ..+.||||+|
T Consensus        44 ~~~~~v~A~q~G~l~~v~~lve~~-g~~v~~~D~~g~tlLHWAAiNNrl~v~r~li~~gadv---n~~gG~l~stPLHWA  119 (600)
T KOG0509|consen   44 SLDDIVKATQYGELETVKELVESE-GESVNNPDREGVTLLHWAAINNRLDVARYLISHGADV---NAIGGVLGSTPLHWA  119 (600)
T ss_pred             hhhhhhhHhhcchHHHHHHHHhhc-CcCCCCCCcCCccceeHHHHcCcHHHHHHHHHcCCCc---cccCCCCCCCcchHH
Confidence            356789999999999999999984 4788888999999999999999999999999999994   4444 6789999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +.+|+..++.+|+++|++++.+|..|.+|+|.|+..++.-.+-+|+.+|++++.+|.+|+|||+
T Consensus       120 ar~G~~~vv~lLlqhGAdpt~~D~~G~~~lHla~~~~~~~~vayll~~~~d~d~~D~~grTpLm  183 (600)
T KOG0509|consen  120 ARNGHISVVDLLLQHGADPTLKDKQGLTPLHLAAQFGHTALVAYLLSKGADIDLRDNNGRTPLM  183 (600)
T ss_pred             HHcCcHHHHHHHHHcCCCCceecCCCCcHHHHHHHhCchHHHHHHHHhcccCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=99.95  E-value=7.1e-27  Score=170.06  Aligned_cols=146  Identities=21%  Similarity=0.264  Sum_probs=129.0

Q ss_pred             CcCcC-CCCCChHHHHHHHh--CCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCC--HHHHHHHHhcCCCCccccc
Q 031838            2 DMDID-QTIKDKDLFKAAET--GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH--PEVVEILLSVDESANVVNA   76 (152)
Q Consensus         2 ~~~~~-~~~~~~~l~~a~~~--~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~--~~~~~~ll~~~~~~~~~~~   76 (152)
                      |++.. +..|.+|||.|+..  ++.+++++|++.+  .+++.++..|.||||+|+..|+  .+++++|++.|++   ++.
T Consensus       168 DIN~~~d~~G~TpLH~A~~n~~~~~eIVklLLe~G--ADVN~kD~~G~TPLH~Aa~~g~~~~eIVklLLe~GAD---VN~  242 (764)
T PHA02716        168 NLNYVCKKTGYGILHAYLGNMYVDIDILEWLCNNG--VNVNLQNNHLITPLHTYLITGNVCASVIKKIIELGGD---MDM  242 (764)
T ss_pred             CcccccCCCCCcHHHHHHHhccCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCC---CCC
Confidence            56666 78899999998654  6789999999987  7888999999999999999995  4899999999988   677


Q ss_pred             cCCCCChhhHHH-------------------------------------HhcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 031838           77 VDEEGWAPIHSA-------------------------------------ASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (152)
Q Consensus        77 ~~~~~~t~l~~a-------------------------------------~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~  119 (152)
                      ++..|.||||.|                                     +..|+.+++++|++.|++++.+|..|.||||
T Consensus       243 kD~~G~TPLh~Ai~~a~n~~~EIvkiLie~~d~n~~~~~~~~L~~~i~AA~~g~leiVklLLe~GAdIN~kD~~G~TPLH  322 (764)
T PHA02716        243 KCVNGMSPIMTYIINIDNINPEITNIYIESLDGNKVKNIPMILHSYITLARNIDISVVYSFLQPGVKLHYKDSAGRTCLH  322 (764)
T ss_pred             CCCCCCCHHHHHHHhhhccCHHHHHHHHHhccccccccchhhhHHHHHHHHcCCHHHHHHHHhCCCceeccCCCCCCHHH
Confidence            889999999965                                     3447788999999999999999999999999


Q ss_pred             HHHH--cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          120 YAAS--KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       120 ~a~~--~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +|+.  .++.+++++|+++|++++.+|..|.||||
T Consensus       323 ~Aaa~~~~~~eIVklLLe~GADIN~kD~~G~TPLH  357 (764)
T PHA02716        323 QYILRHNISTDIIKLLHEYGNDLNEPDNIGNTVLH  357 (764)
T ss_pred             HHHHHhCCCchHHHHHHHcCCCCccCCCCCCCHHH
Confidence            9764  45789999999999999999999999996

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.95  E-value=1.9e-26  Score=142.64  Aligned_cols=143  Identities=20%  Similarity=0.210  Sum_probs=122.4

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHH----HHHhhcccccccCCCCCchHHHHHHHcCCHHH---HHHHHhcCCCCccc
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKS----LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEV---VEILLSVDESANVV   74 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~----ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~---~~~ll~~~~~~~~~   74 (152)
                      |+...+..+.+.|+.|++.|+++.++.    |++.+  ..++.++..|+||||+|+..++.+.   +++|+..+.+   +
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g--~~~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gad---i   86 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDG--HLLHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGAD---I   86 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcc--hhhhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCC---C
Confidence            344456677889999999999965554    44444  5677888999999999999987654   7899998887   6


Q ss_pred             cccC-CCCChhhHHHHhcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccc
Q 031838           75 NAVD-EEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNF  149 (152)
Q Consensus        75 ~~~~-~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t  149 (152)
                      +.++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||+++|+..++.+++++|+++|++++.++..|..
T Consensus        87 n~~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~  163 (166)
T PHA02743         87 NARELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYHIAYKMRDRRMMEILRANGAVCDDPLSIGLS  163 (166)
T ss_pred             CCCCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcccCCcc
Confidence            7777 589999999999999999999995 79999999999999999999999999999999999999999887753

>PHA03095 ankyrin-like protein; Provisional

Probab=99.95  E-value=3.1e-26  Score=162.46  Aligned_cols=146  Identities=23%  Similarity=0.265  Sum_probs=119.3

Q ss_pred             CcCcCCCCCChHHHHHHHhC---CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC-CHHHHHHHHhcCCCCcccccc
Q 031838            2 DMDIDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      |++..+..|.||||.|+..+   +.+.++.|++.+  .+++.++..|.||||+|+..+ ..+++++|++.|.+   ++.+
T Consensus        39 ~vn~~~~~g~t~Lh~a~~~~~~~~~~iv~~Ll~~G--adin~~~~~g~TpLh~A~~~~~~~~iv~lLl~~ga~---in~~  113 (471)
T PHA03095         39 DVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAG--ADVNAPERCGFTPLHLYLYNATTLDVIKLLIKAGAD---VNAK  113 (471)
T ss_pred             CcccCCCCCCCHHHHHHHhcCCChHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCcHHHHHHHHHcCCC---CCCC
Confidence            56777788888999998888   888888888877  677788888889999998888 58888888888877   6677


Q ss_pred             CCCCChhhHHHH--hcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCccccccccCC
Q 031838           78 DEEGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        78 ~~~~~t~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..|.||||.|+  ..++.+++++|++.|++++..+..|.||+|+|+..+  ..+++++|+++|++++..+..|+||||
T Consensus       114 ~~~g~tpLh~a~~~~~~~~~iv~~Ll~~gad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~g~t~Lh  192 (471)
T PHA03095        114 DKVGRTPLHVYLSGFNINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH  192 (471)
T ss_pred             CCCCCCHHHHHhhCCcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            778888988888  456788888888888888888888888888887755  567788888888887777777777775

>PHA02798 ankyrin-like protein; Provisional

Probab=99.95  E-value=2.6e-26  Score=163.34  Aligned_cols=146  Identities=21%  Similarity=0.295  Sum_probs=116.2

Q ss_pred             CcCcCCCCCChHHHHHHHhC---CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCC---HHHHHHHHhcCCCCcccc
Q 031838            2 DMDIDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVDESANVVN   75 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~ll~~~~~~~~~~   75 (152)
                      |++..+..|.||||.|+..+   +.+++++|++.|  .+++.++..|.||||+|+..++   .+++++|++.|.+   ++
T Consensus       101 diN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gad---in  175 (489)
T PHA02798        101 DINKKNSDGETPLYCLLSNGYINNLEILLFMIENG--ADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVD---IN  175 (489)
T ss_pred             CCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCC---cc
Confidence            56777778888888888765   678888888876  5777788888888888888876   7888888887776   44


Q ss_pred             cc-CCCCChhhHHHHhc----CCHHHHHHHHHcCCCC---------------------------------------cccC
Q 031838           76 AV-DEEGWAPIHSAASI----GNVTIVEMLLSKGADV---------------------------------------NLKN  111 (152)
Q Consensus        76 ~~-~~~~~t~l~~a~~~----~~~~~~~~l~~~~~~~---------------------------------------~~~~  111 (152)
                      .. +..+.||+|.++..    ++.+++++|++.|+++                                       +.+|
T Consensus       176 ~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~~~~~~~~~~~l~~l~~~~~~~~~~i~~~l~~~~dvN~~d  255 (489)
T PHA02798        176 THNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKENKSHKKKFMEYLNSLLYDNKRFKKNILDFIFSYIDINQVD  255 (489)
T ss_pred             cccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCCccccchHHHHHHHHHhhcccchHHHHHHHHhcCCCCCcC
Confidence            44 34677888877653    3677777777766543                                       3456


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       112 ~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..|.||||+|+..++.+++++|+++|++++..+..|+||||
T Consensus       256 ~~G~TPL~~A~~~~~~~~v~~LL~~GAdin~~d~~G~TpL~  296 (489)
T PHA02798        256 ELGFNPLYYSVSHNNRKIFEYLLQLGGDINIITELGNTCLF  296 (489)
T ss_pred             cCCccHHHHHHHcCcHHHHHHHHHcCCcccccCCCCCcHHH
Confidence            67999999999999999999999999999999999999985

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.94  E-value=6.3e-26  Score=161.60  Aligned_cols=146  Identities=16%  Similarity=0.241  Sum_probs=125.0

Q ss_pred             CcCcCCCCCChHHHHHHHh---CCHHHHHHHHHhhccccc-ccCCCCCchHHHHHHHc--CCHHHHHHHHhcCCCCcccc
Q 031838            2 DMDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSL-SLRNDDDRTLLHVAASC--GHPEVVEILLSVDESANVVN   75 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~-~~~~~~g~t~l~~a~~~--~~~~~~~~ll~~~~~~~~~~   75 (152)
                      |++..+..|.|||+.|+..   ++.+++++|++.|  .++ +.++..|.||||+|+..  ++.+++++|++.|++   ++
T Consensus       100 din~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~G--adin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gad---i~  174 (494)
T PHA02989        100 DINLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKG--INVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVN---LF  174 (494)
T ss_pred             CCCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCC--CCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCC---cc
Confidence            6788888999999988765   6899999999987  677 67888999999998765  578999999999987   44


Q ss_pred             c-cCCCCChhhHHHHhc----CCHHHHHHHHHcCCCCcc--------------------------------------cCC
Q 031838           76 A-VDEEGWAPIHSAASI----GNVTIVEMLLSKGADVNL--------------------------------------KND  112 (152)
Q Consensus        76 ~-~~~~~~t~l~~a~~~----~~~~~~~~l~~~~~~~~~--------------------------------------~~~  112 (152)
                      . .+..|.||+|.|+..    ++.+++++|++.|++++.                                      +|.
T Consensus       175 ~~~~~~g~tpL~~a~~~~~~~~~~~iv~~Ll~~Ga~vn~~~~~~~t~l~~~~~~~~~~~~~~~~il~~l~~~advn~~d~  254 (494)
T PHA02989        175 EKTSLYGLTPMNIYLRNDIDVISIKVIKYLIKKGVNIETNNNGSESVLESFLDNNKILSKKEFKVLNFILKYIKINKKDK  254 (494)
T ss_pred             ccccccCCChHHHHHhcccccccHHHHHHHHhCCCCccccCCccccHHHHHHHhchhhcccchHHHHHHHhCCCCCCCCC
Confidence            4 567899999988764    488999999988876543                                      445


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       113 ~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|.||||+|+..++.+++++|+++|++++.++..|+||||
T Consensus       255 ~G~TpL~~Aa~~~~~~~v~~LL~~Gadin~~d~~G~TpL~  294 (494)
T PHA02989        255 KGFNPLLISAKVDNYEAFNYLLKLGDDIYNVSKDGDTVLT  294 (494)
T ss_pred             CCCCHHHHHHHhcCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            6899999999999999999999999999999999999986

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.94  E-value=8.4e-26  Score=168.70  Aligned_cols=143  Identities=24%  Similarity=0.305  Sum_probs=118.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.||||.|+..|+.+.++.|++.+  .+++.+|..|.||||+|+..|+.+++++|+..+...   +  ...+
T Consensus       550 d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~g--adin~~d~~G~TpL~~A~~~g~~~iv~~L~~~~~~~---~--~~~~  622 (823)
T PLN03192        550 DPDIGDSKGRTPLHIAASKGYEDCVLVLLKHA--CNVHIRDANGNTALWNAISAKHHKIFRILYHFASIS---D--PHAA  622 (823)
T ss_pred             CCCCCCCCCCCHHHHHHHcChHHHHHHHHhcC--CCCCCcCCCCCCHHHHHHHhCCHHHHHHHHhcCccc---C--cccC
Confidence            56777777888888888888888888888766  567777778888888888888888888887654431   1  2346


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccc-cccC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC-NFLY  151 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~-~t~l  151 (152)
                      .++||.|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..| .||+
T Consensus       623 ~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh~A~~~g~~~iv~~Ll~~GAdv~~~~~~g~~t~~  693 (823)
T PLN03192        623 GDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQVAMAEDHVDMVRLLIMNGADVDKANTDDDFSPT  693 (823)
T ss_pred             chHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCCCCCCCCCHH
Confidence            678888888899999999999999999999999999999999999999999999999999999888 6664

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.94  E-value=5.4e-26  Score=162.17  Aligned_cols=146  Identities=33%  Similarity=0.421  Sum_probs=133.2

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      +..+..|.||||+|++.|.++++.-|+..|  ..++.++.++.||||.|+++|++++++.|++ ..+.-..+..|..|.|
T Consensus       267 ~~~d~dg~tpLH~a~r~G~~~svd~Ll~~G--a~I~~kn~d~~spLH~AA~yg~~ntv~rLL~-~~~~rllne~D~~g~t  343 (929)
T KOG0510|consen  267 NDEDNDGCTPLHYAARQGGPESVDNLLGFG--ASINSKNKDEESPLHFAAIYGRINTVERLLQ-ESDTRLLNESDLHGMT  343 (929)
T ss_pred             hcccccCCchHHHHHHcCChhHHHHHHHcC--CcccccCCCCCCchHHHHHcccHHHHHHHHh-CcCccccccccccCCC
Confidence            456778999999999999999999999988  7888999999999999999999999999998 3333347888999999


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCCc---ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           84 PIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~---~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+|.|+..|+-.++++|++.|+...   -.|.+|.||||.|+..|+..+++.|+.+|+++..+|+.|.++|+
T Consensus       344 pLHlaa~~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~~g~~~av~~Li~~Ga~I~~~n~~g~SA~~  415 (929)
T KOG0510|consen  344 PLHLAAKSGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAKYGNTSAVQKLISHGADIGVKNKKGKSAFD  415 (929)
T ss_pred             chhhhhhcCHHHHHHHHHhcChhhhcccccccCCchhhhHHHHhccHHHHHHHHHcCCceeecccccccccc
Confidence            9999999999999999999998877   34889999999999999999999999999999999999999874

>PHA03095 ankyrin-like protein; Provisional

Probab=99.94  E-value=2.3e-25  Score=157.99  Aligned_cols=149  Identities=23%  Similarity=0.257  Sum_probs=103.2

Q ss_pred             CcCcCCCCCChHHHHHH--HhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCcc----
Q 031838            2 DMDIDQTIKDKDLFKAA--ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANV----   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~----   73 (152)
                      |++..+..|.||||.|+  ..++.++++.|++.+  .+++.++..|.||||+|+..+  ..+++++|++.+.+...    
T Consensus       109 ~in~~~~~g~tpLh~a~~~~~~~~~iv~~Ll~~g--ad~~~~d~~g~tpL~~a~~~~~~~~~iv~~Ll~~g~~~~~~d~~  186 (471)
T PHA03095        109 DVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRKG--ADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDR  186 (471)
T ss_pred             CCCCCCCCCCCHHHHHhhCCcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCCCHHHHHHHHHcCCCCcccCCC
Confidence            45556666666777666  344566666666655  445555555566666555443  34455555544433110    


Q ss_pred             ----------------------------ccccCCCCChhhHHHHhcCCH--HHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 031838           74 ----------------------------VNAVDEEGWAPIHSAASIGNV--TIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (152)
Q Consensus        74 ----------------------------~~~~~~~~~t~l~~a~~~~~~--~~~~~l~~~~~~~~~~~~~~~~pl~~a~~  123 (152)
                                                  .+.++..|.||||+|+..++.  .+++.++..|++++.+|..|.||||+|+.
T Consensus       187 g~t~Lh~~~~~~~~~~~i~~~Ll~~g~~~~~~d~~g~tpLh~Aa~~~~~~~~~v~~ll~~g~din~~d~~g~TpLh~A~~  266 (471)
T PHA03095        187 FRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAV  266 (471)
T ss_pred             CCCHHHHHHHHCCCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCchHHHHHHHHHcCCCCCCcCCCCCCHHHHHHH
Confidence                                        344556666777777766653  46677788889999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          124 KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|+.+++++|+++|++++..+..|+||||
T Consensus       267 ~~~~~~v~~LL~~gad~n~~~~~g~tpl~  295 (471)
T PHA03095        267 FNNPRACRRLIALGADINAVSSDGNTPLS  295 (471)
T ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            99999999999999999999999999985

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.94  E-value=2.3e-25  Score=164.03  Aligned_cols=145  Identities=24%  Similarity=0.334  Sum_probs=102.6

Q ss_pred             cCcCCCCCChHHHHHHHhC-CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETG-DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      ++..+..|.||||.|+..+ +.+.++.|++.+  .+++.++..|.||||+|+..++.+++++|++.+++   .+..+..|
T Consensus       334 in~~d~~g~TpLh~A~~~~~~~~iv~lLl~~g--adin~~d~~G~TpLh~Aa~~~~~~iv~~Ll~~gad---~~~~~~~g  408 (682)
T PHA02876        334 VNAADRLYITPLHQASTLDRNKDIVITLLELG--ANVNARDYCDKTPIHYAAVRNNVVIINTLLDYGAD---IEALSQKI  408 (682)
T ss_pred             CCCcccCCCcHHHHHHHhCCcHHHHHHHHHcC--CCCccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---ccccCCCC
Confidence            3444455555555555532 445555555544  45666677777777777777777777777777766   45556667


Q ss_pred             ChhhHHHHhcCC-HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC-CHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGN-VTIVEMLLSKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~-~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~-~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..++ ..++++|++.|++++.+|..|.||||+|+..+ +.+++++|+++|++++..+..|.|||+
T Consensus       409 ~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh~Aa~~~~~~~iv~lLl~~Gad~n~~d~~g~tpl~  481 (682)
T PHA02876        409 GTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLL  481 (682)
T ss_pred             CchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHHHHHHhCCcHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            777777766554 45677777888888888888888888888866 578888888888888888888888874

>PHA02946 ankyin-like protein; Provisional

Probab=99.93  E-value=3.3e-25  Score=155.61  Aligned_cols=144  Identities=17%  Similarity=0.215  Sum_probs=126.5

Q ss_pred             CcCcCCCCCChHHHHHHHhC--CHHHHHHHHHhhccccccc-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC
Q 031838            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (152)
                      |++..+..|.||||.|+..+  .++.++.|++.+  .+++. .+..|.|||+ |+..++.++++.|++.+.+   .+..|
T Consensus        97 din~~d~~g~TpLh~A~~~~~~~~e~v~lLl~~G--adin~~~d~~g~tpL~-aa~~~~~~vv~~Ll~~gad---~~~~d  170 (446)
T PHA02946         97 DPNACDKQHKTPLYYLSGTDDEVIERINLLVQYG--AKINNSVDEEGCGPLL-ACTDPSERVFKKIMSIGFE---ARIVD  170 (446)
T ss_pred             CCCCCCCCCCCHHHHHHHcCCchHHHHHHHHHcC--CCcccccCCCCCcHHH-HHHCCChHHHHHHHhcccc---ccccC
Confidence            67788899999999998876  489999999987  56664 5788999997 5667899999999998887   67788


Q ss_pred             CCCChhhHHHHhcC--CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC--CHHHHHHHHhcCCCCCCccccccccCC
Q 031838           79 EEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDGGRTALHYAASKG--WLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        79 ~~~~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~--~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..|.||||.|+..+  +.+++++|++.|++++.+|..|.||||+|+..+  +.+++++|+. |++++.+|..|.||||
T Consensus       171 ~~G~t~Lh~A~~~~~~~~~~v~~Ll~~Gadin~~d~~G~TpLH~Aa~~~~~~~~iv~lLl~-gadin~~d~~G~TpLh  247 (446)
T PHA02946        171 KFGKNHIHRHLMSDNPKASTISWMMKLGISPSKPDHDGNTPLHIVCSKTVKNVDIINLLLP-STDVNKQNKFGDSPLT  247 (446)
T ss_pred             CCCCCHHHHHHHhcCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCCCcHHHHHHHHc-CCCCCCCCCCCCCHHH
Confidence            99999999988755  468999999999999999999999999999976  7889999885 9999999999999996

>PHA02741 hypothetical protein; Provisional

Probab=99.93  E-value=7.4e-25  Score=136.02  Aligned_cols=136  Identities=18%  Similarity=0.253  Sum_probs=118.9

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhh----cccccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCccc
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQ----LLKSLSLRNDDDRTLLHVAASCGH----PEVVEILLSVDESANVV   74 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~----~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~   74 (152)
                      ++.++..|.++||.|++.|+.++++.++...    .+..++.++..|.||||+|+..++    .+++++++..+.+   +
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gad---i   90 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGAD---I   90 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCC---C
Confidence            4556788999999999999999999986431    235688899999999999999998    5888999988877   6


Q ss_pred             cccCC-CCChhhHHHHhcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 031838           75 NAVDE-EGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (152)
Q Consensus        75 ~~~~~-~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~  141 (152)
                      +.++. .|.||||+|+..++.+++++|+. .|++++..+..|.|||++|...++.+++++|++.++...
T Consensus        91 n~~~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~~A~~~~~~~iv~~L~~~~~~~~  159 (169)
T PHA02741         91 NAQEMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFELAIDNEDVAMMQILREIVATSR  159 (169)
T ss_pred             CCCCcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHHHHHHCCCHHHHHHHHHHHHHhc
Confidence            66664 89999999999999999999997 599999999999999999999999999999999876543

>PHA02795 ankyrin-like protein; Provisional

Probab=99.93  E-value=3.4e-25  Score=152.50  Aligned_cols=141  Identities=16%  Similarity=0.120  Sum_probs=125.0

Q ss_pred             CCCCCChHHHHHHH--hCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccccc-----C
Q 031838            6 DQTIKDKDLFKAAE--TGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV-----D   78 (152)
Q Consensus         6 ~~~~~~~~l~~a~~--~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-----~   78 (152)
                      ....++++||.++.  .|+.++|++|++.|  .+++..  .+.||+|.|+..++.+++++|+++|++.  .+..     +
T Consensus       112 ~~~~~~~~L~~~~~n~~n~~eiV~~LI~~G--ADIn~~--~~~t~lh~A~~~~~~eIVk~Lls~Ga~~--~n~~~~~l~~  185 (437)
T PHA02795        112 NCNSVQDLLLYYLSNAYVEIDIVDFMVDHG--AVIYKI--ECLNAYFRGICKKESSVVEFILNCGIPD--ENDVKLDLYK  185 (437)
T ss_pred             ccccccHHHHHHHHhcCCCHHHHHHHHHCC--CCCCCC--CCCCHHHHHHHcCcHHHHHHHHhcCCcc--cccccchhhh
Confidence            45568999999999  89999999999998  565553  4589999999999999999999998642  2221     2


Q ss_pred             CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..+.+++|.|...++.+++++|+.+|++++.++..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus       186 ~~~~t~l~~a~~~~~~eIve~LIs~GADIN~kD~~G~TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh  259 (437)
T PHA02795        186 IIQYTRGFLVDEPTVLEIYKLCIPYIEDINQLDAGGRTLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLD  259 (437)
T ss_pred             hhccchhHHHHhcCHHHHHHHHHhCcCCcCcCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            34778999999999999999999999999999999999999999999999999999999999999999999996

>PHA02876 ankyrin repeat protein; Provisional

Probab=99.93  E-value=6.8e-25  Score=161.50  Aligned_cols=145  Identities=30%  Similarity=0.363  Sum_probs=87.3

Q ss_pred             cCcCCCCCChHHHHHHHhC-CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC-CHHHHHHHHhcCCCCccccccCCC
Q 031838            3 MDIDQTIKDKDLFKAAETG-DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-HPEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~-~~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      ++..+..|.||||.|+..| +.+.++.|+..+  .+++..+..|.||||+|+..+ ..+++..++..+.+   ++.++..
T Consensus       300 in~~d~~g~TpLh~Aa~~g~~~~~v~~Ll~~g--adin~~d~~g~TpLh~A~~~~~~~~iv~lLl~~gad---in~~d~~  374 (682)
T PHA02876        300 VNAKNIKGETPLYLMAKNGYDTENIRTLIMLG--ADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN---VNARDYC  374 (682)
T ss_pred             CCCcCCCCCCHHHHHHHhCCCHHHHHHHHHcC--CCCCCcccCCCcHHHHHHHhCCcHHHHHHHHHcCCC---CccCCCC
Confidence            3444444555555555555 355555555444  344455555555555555532 44555555555555   4555666


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC-HHHHHHHHhcCCCCCCccccccccCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~-~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |.||||+|+..++.+++++|++.|++++..+..|.||||+|+..+. ..++++|+++|++++.++..|+||||
T Consensus       375 G~TpLh~Aa~~~~~~iv~~Ll~~gad~~~~~~~g~T~Lh~A~~~~~~~~~vk~Ll~~gadin~~d~~G~TpLh  447 (682)
T PHA02876        375 DKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKTLIDRGANVNSKNKDLSTPLH  447 (682)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHCCCCccccCCCCCchHHHHHHcCCHHHHHHHHHhCCCCCCcCCCCCChHHH
Confidence            6677777777777777777777677666666666677777665544 34566777777777777777777765

>PHA02917 ankyrin-like protein; Provisional

Probab=99.93  E-value=1.6e-24  Score=157.64  Aligned_cols=145  Identities=19%  Similarity=0.179  Sum_probs=116.4

Q ss_pred             cCcCCCCCChHHHHHHHh---CCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCC----------------------
Q 031838            3 MDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH----------------------   57 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~----------------------   57 (152)
                      ++..+..|+||||.|+..   |+.+.++.|++.+  .+++.++..|.||||+|+..|+                      
T Consensus        25 ~~~~d~~g~t~Lh~a~~~~~~~~~~~v~~Ll~~g--a~v~~~~~~g~TpL~~Aa~~g~~~v~~~~~~~Ll~~~~~~n~~~  102 (661)
T PHA02917         25 NDTRNQFKNNALHAYLFNEHCNNVEVVKLLLDSG--TNPLHKNWRQLTPLEEYTNSRHVKVNKDIAMALLEATGYSNIND  102 (661)
T ss_pred             ccccCCCCCcHHHHHHHhhhcCcHHHHHHHHHCC--CCccccCCCCCCHHHHHHHcCChhHHHHHHHHHHhccCCCCCCC
Confidence            345577899999997555   8899999999987  6777888899999998887654                      


Q ss_pred             -------------HHHHHHHHhcCCCCccccccCCCCChhhHHHH--hcCCHHHHHHHHHcCCCCcccCC---CC-----
Q 031838           58 -------------PEVVEILLSVDESANVVNAVDEEGWAPIHSAA--SIGNVTIVEMLLSKGADVNLKND---GG-----  114 (152)
Q Consensus        58 -------------~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~--~~~~~~~~~~l~~~~~~~~~~~~---~~-----  114 (152)
                                   .+++++|+++|++   ++..+..|.|||+.++  ..++.+++++|+++|++++..+.   .|     
T Consensus       103 ~~~~~~~a~~~~~~e~vk~Ll~~Gad---in~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~  179 (661)
T PHA02917        103 FNIFSYMKSKNVDVDLIKVLVEHGFD---LSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDD  179 (661)
T ss_pred             cchHHHHHhhcCCHHHHHHHHHcCCC---CCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCcccccccccccccccc
Confidence                         3445555555555   6677888999998543  56899999999999999876543   23     


Q ss_pred             ------CcHHHHHHH-----------cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          115 ------RTALHYAAS-----------KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       115 ------~~pl~~a~~-----------~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                            .||||+|+.           .++.+++++|+++|++++.++..|.||||
T Consensus       180 ~~~~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh  234 (661)
T PHA02917        180 YQPRNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQ  234 (661)
T ss_pred             ccccccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHH
Confidence                  499999975           45789999999999999999999999987

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=99.92  E-value=2.9e-24  Score=160.54  Aligned_cols=138  Identities=24%  Similarity=0.286  Sum_probs=126.1

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      ....++|+.|+..|+.+.++.|++.+  .+++..|..|.||||+|+..|+.++++.|++.+++   .+.+|..|.||||.
T Consensus       523 ~~~~~~L~~Aa~~g~~~~l~~Ll~~G--~d~n~~d~~G~TpLh~Aa~~g~~~~v~~Ll~~gad---in~~d~~G~TpL~~  597 (823)
T PLN03192        523 PNMASNLLTVASTGNAALLEELLKAK--LDPDIGDSKGRTPLHIAASKGYEDCVLVLLKHACN---VHIRDANGNTALWN  597 (823)
T ss_pred             ccchhHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHhcCCC---CCCcCCCCCCHHHH
Confidence            34578999999999999999999987  67889999999999999999999999999998887   67888999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+..|+.+++++|++.+...+.  ..+.++|+.|+..|+.++++.|+++|++++.+|..|+||||
T Consensus       598 A~~~g~~~iv~~L~~~~~~~~~--~~~~~~L~~Aa~~g~~~~v~~Ll~~Gadin~~d~~G~TpLh  660 (823)
T PLN03192        598 AISAKHHKIFRILYHFASISDP--HAAGDLLCTAAKRNDLTAMKELLKQGLNVDSEDHQGATALQ  660 (823)
T ss_pred             HHHhCCHHHHHHHHhcCcccCc--ccCchHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            9999999999999987765543  34678999999999999999999999999999999999997

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=6.6e-25  Score=148.94  Aligned_cols=140  Identities=31%  Similarity=0.374  Sum_probs=128.0

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      ....|-+||+.|...|+++.|+.|++++  ..++....-..|||..||.-|+++++++|++++.+   .+..+..|.|.|
T Consensus        80 e~IegappLWaAsaAGHl~vVk~L~~~g--a~VN~tT~TNStPLraACfDG~leivKyLvE~gad---~~IanrhGhTcL  154 (615)
T KOG0508|consen   80 ETIEGAPPLWAASAAGHLEVVKLLLRRG--ASVNDTTRTNSTPLRAACFDGHLEIVKYLVEHGAD---PEIANRHGHTCL  154 (615)
T ss_pred             cccCCCchhhHHhccCcHHHHHHHHHhc--CccccccccCCccHHHHHhcchhHHHHHHHHcCCC---CcccccCCCeeE
Confidence            3456889999999999999999999998  67777776678999999999999999999999998   666788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      |+||..|+.+++++|++.|++++.++..|.|+||.|+..|+.+++++|+++|+-+ .++..|+|||
T Consensus       155 mIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH~caEsG~vdivq~Ll~~ga~i-~~d~~GmtPL  219 (615)
T KOG0508|consen  155 MIACYKGHVDIAQYLLEQGADVNAKSYKGNTALHDCAESGSVDIVQLLLKHGAKI-DVDGHGMTPL  219 (615)
T ss_pred             EeeeccCchHHHHHHHHhCCCcchhcccCchHHHhhhhcccHHHHHHHHhCCcee-eecCCCCchH
Confidence            9999999999999999999999999999999999999999999999999999988 5677799997

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=2.1e-24  Score=154.19  Aligned_cols=147  Identities=29%  Similarity=0.371  Sum_probs=92.0

Q ss_pred             CCcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHh-----cCCCCcccc
Q 031838            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS-----VDESANVVN   75 (152)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~-----~~~~~~~~~   75 (152)
                      .|++..++.+.||||.|+..+..|..+.|++.+  .++...+.+|.+|+|.|++.+..++.+.++.     ....   ++
T Consensus       145 ~dvnl~de~~~TpLh~A~~~~~~E~~k~Li~~~--a~~~K~~~~~~~~iH~aa~s~s~e~mEi~l~~~g~~r~~~---in  219 (929)
T KOG0510|consen  145 ADVNLEDENGFTPLHLAARKNKVEAKKELINKG--ADPCKSDIDGNFPIHEAARSGSKECMEIFLPEHGYERQTH---IN  219 (929)
T ss_pred             CCccccccCCCchhhHHHhcChHHHHHHHHhcC--CCCCcccCcCCchHHHHHHhcchhhhhhhhccccchhhcc---cc
Confidence            478888889999999999999999778888776  4555566666666666666666666666655     2222   34


Q ss_pred             ccCCCCChhhHHHHhcCCHHHHHHHHHcCCC---------------CcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 031838           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---------------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (152)
Q Consensus        76 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~---------------~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~  140 (152)
                      ..+..+.+|||.|+..|++++++.+++.|..               ++..|.+|.||||+|++.|+.+.++.|+..|+++
T Consensus       220 ~~~n~~~~pLhlAve~g~~e~lk~~L~n~~~~a~~~~~~~~q~kelv~~~d~dg~tpLH~a~r~G~~~svd~Ll~~Ga~I  299 (929)
T KOG0510|consen  220 FDNNEKATPLHLAVEGGDIEMLKMCLQNGKKIADVQLDAMQQEKELVNDEDNDGCTPLHYAARQGGPESVDNLLGFGASI  299 (929)
T ss_pred             cccCCCCcchhhhhhcCCHHHHHHHHhCccccchhhhHHHHHHHHHhhcccccCCchHHHHHHcCChhHHHHHHHcCCcc
Confidence            4445555555555555555555555555322               1223455555666666666666666666666666


Q ss_pred             CCccccccccCC
Q 031838          141 NSKDKACNFLYQ  152 (152)
Q Consensus       141 ~~~~~~~~t~l~  152 (152)
                      +.+++++.||||
T Consensus       300 ~~kn~d~~spLH  311 (929)
T KOG0510|consen  300 NSKNKDEESPLH  311 (929)
T ss_pred             cccCCCCCCchH
Confidence            666655555554

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.92  E-value=5.6e-25  Score=136.30  Aligned_cols=143  Identities=25%  Similarity=0.276  Sum_probs=68.7

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      |..+++|.|||.+|+..|.+..|++|++.+  .+++...+...++|..|++.|..++++.|+.++.+   +|..|.+|.|
T Consensus       154 N~~De~GfTpLiWAaa~G~i~vV~fLL~~G--Adp~~lgk~resALsLAt~ggytdiV~lLL~r~vd---VNvyDwNGgT  228 (296)
T KOG0502|consen  154 NACDEFGFTPLIWAAAKGHIPVVQFLLNSG--ADPDALGKYRESALSLATRGGYTDIVELLLTREVD---VNVYDWNGGT  228 (296)
T ss_pred             cCccccCchHhHHHHhcCchHHHHHHHHcC--CChhhhhhhhhhhHhHHhcCChHHHHHHHHhcCCC---cceeccCCCc
Confidence            334444555555555555555555555444  33334444444455555555555555555544444   3444444555


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||-+|+..++.+|++.|+..|++++..+..|++++..|+..|+. +++..++.-+.....++.-+||+|
T Consensus       229 pLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~mdlAValGyr-~Vqqvie~h~lkl~Q~~~~~~~~~  296 (296)
T KOG0502|consen  229 PLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIMDLAVALGYR-IVQQVIEKHALKLCQDSEKRTPLH  296 (296)
T ss_pred             eeeeeecCChHHHHHHHHhcCCCcccccccCCcHHHHHHHhhhH-HHHHHHHHHHHHHhhcccCCCCCC
Confidence            55555555555555555555555544444455555555554444 444444444444444444444443

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.92  E-value=3.9e-24  Score=131.03  Aligned_cols=135  Identities=15%  Similarity=0.207  Sum_probs=110.3

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhc---ccccccCCCCCchHHHHHHHcCCHH---HHHHHHhcCCCCcccccc
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQL---LKSLSLRNDDDRTLLHVAASCGHPE---VVEILLSVDESANVVNAV   77 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~---~~~~~~~~~~g~t~l~~a~~~~~~~---~~~~ll~~~~~~~~~~~~   77 (152)
                      ..++..|.||||+|++.|+++.+........   ...+..++..|.||||+|+..++.+   ++++|+..+.+   ++.+
T Consensus        11 ~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gad---in~~   87 (154)
T PHA02736         11 SEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGAD---INGK   87 (154)
T ss_pred             HhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCC---cccc
Confidence            3456779999999999998543322211110   1224456888999999999999864   67889988877   6777


Q ss_pred             C-CCCChhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 031838           78 D-EEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (152)
Q Consensus        78 ~-~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~  141 (152)
                      + ..|.||||+|+..++.+++++|+.. |++++.++..|.||+++|+..++.+++++|+++|++.+
T Consensus        88 ~~~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~~A~~~~~~~i~~~Ll~~ga~~~  153 (154)
T PHA02736         88 ERVFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNILRAKGAQCK  153 (154)
T ss_pred             CCCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCC
Confidence            6 5899999999999999999999974 99999999999999999999999999999999998865

>KOG0508 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.92  E-value=5.3e-25  Score=149.36  Aligned_cols=142  Identities=29%  Similarity=0.381  Sum_probs=127.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccc--------cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKS--------LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~--------~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (152)
                      ...|.+||.+|++.|+.++|++|++.. ...        .+-....|-+||..|+..||+++|+.|+.++++   +|...
T Consensus        39 ~~~g~tPL~iaaRnGH~~vVeyLle~~-~a~~e~~GsV~FDge~IegappLWaAsaAGHl~vVk~L~~~ga~---VN~tT  114 (615)
T KOG0508|consen   39 VQNGGTPLLIAARNGHADVVEYLLEHC-RASPEQGGSVRFDGETIEGAPPLWAASAAGHLEVVKLLLRRGAS---VNDTT  114 (615)
T ss_pred             ccCCCCceeeehhcCcHHHHHHHHHHh-cCCccCCceEEeCCcccCCCchhhHHhccCcHHHHHHHHHhcCc---ccccc
Confidence            345779999999999999999999853 122        233445688999999999999999999999977   66666


Q ss_pred             CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ....|||..||.-|+.+++++|+++|+++++.|..|.|.|++|+..|+.+++++|++.|++++.++..|+|+||
T Consensus       115 ~TNStPLraACfDG~leivKyLvE~gad~~IanrhGhTcLmIa~ykGh~~I~qyLle~gADvn~ks~kGNTALH  188 (615)
T KOG0508|consen  115 RTNSTPLRAACFDGHLEIVKYLVEHGADPEIANRHGHTCLMIACYKGHVDIAQYLLEQGADVNAKSYKGNTALH  188 (615)
T ss_pred             ccCCccHHHHHhcchhHHHHHHHHcCCCCcccccCCCeeEEeeeccCchHHHHHHHHhCCCcchhcccCchHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999998

>PHA02798 ankyrin-like protein; Provisional

Probab=99.91  E-value=1.6e-23  Score=149.14  Aligned_cols=138  Identities=20%  Similarity=0.266  Sum_probs=100.4

Q ss_pred             CcCcCCCCCChHHHHHHHh-----CCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCcc
Q 031838            2 DMDIDQTIKDKDLFKAAET-----GDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANV   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~   73 (152)
                      |++..+..|.|||+.|+..     +..++++.|++.|  .+++.++..|.||||+|+..+   +.+++++|++.|++   
T Consensus        63 dvn~~d~~g~TpL~~~~~n~~~~~~~~~iv~~Ll~~G--adiN~~d~~G~TpLh~a~~~~~~~~~~iv~~Ll~~Gad---  137 (489)
T PHA02798         63 NVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIENG--ADINKKNSDGETPLYCLLSNGYINNLEILLFMIENGAD---  137 (489)
T ss_pred             CCCCCCCCCCChHHHHHHhHHhHHhHHHHHHHHHHCC--CCCCCCCCCcCcHHHHHHHcCCcChHHHHHHHHHcCCC---
Confidence            5666777788888877653     5677888888776  567777778888888887764   56788888877776   


Q ss_pred             ccccCCCCChhhHHHHhcCC---HHHHHHHHHcCCCCcccC-CCCCcHHHHHHHc----CCHHHHHHHHhcCCCCCCcc
Q 031838           74 VNAVDEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKN-DGGRTALHYAASK----GWLKIVELLISRGAKINSKD  144 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~---~~~~~~l~~~~~~~~~~~-~~~~~pl~~a~~~----~~~~~~~~Ll~~g~~~~~~~  144 (152)
                      ++..+..|.||||+|+..++   .+++++|++.|++++..+ ..|.||+|.+...    ++.+++++|+++|++++..+
T Consensus       138 vn~~d~~g~tpL~~a~~~~~~~~~~vv~~Ll~~gadin~~~~~~~~t~Lh~~~~~~~~~~~~~ivk~Li~~Ga~i~~~~  216 (489)
T PHA02798        138 TTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEKGVDINTHNNKEKYDTLHCYFKYNIDRIDADILKLFVDNGFIINKEN  216 (489)
T ss_pred             ccccCCCCCcHHHHHHHcCCcchHHHHHHHHHhCCCcccccCcCCCcHHHHHHHhccccCCHHHHHHHHHCCCCcccCC
Confidence            56667778888888887776   778888888888877664 4567888877653    35777777777776554433

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.91  E-value=1.8e-23  Score=125.29  Aligned_cols=136  Identities=32%  Similarity=0.430  Sum_probs=122.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      ..+..|+..+.+..|+.|++.. ...++.+|.+|.||||-|+.+|+.+++..++..+++   .+.+...|+||||.||..
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~-an~vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn---~~a~T~~GWTPLhSAckW  140 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEK-ANHVNTRDEDEYTPLHRAAYNGHLDIVHELLLSGAN---KEAKTNEGWTPLHSACKW  140 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhc-cccccccccccccHHHHHHhcCchHHHHHHHHccCC---cccccccCccchhhhhcc
Confidence            4678899999999999999986 367999999999999999999999999999999888   667788999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH-HHHHHHH-hcCCCCCCccccccccC
Q 031838           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL-KIVELLI-SRGAKINSKDKACNFLY  151 (152)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~-~~~~~Ll-~~g~~~~~~~~~~~t~l  151 (152)
                      .+.+++-+|+.+|++++.......||||.|+..++. ..+.+|+ .++.+...++..+.|||
T Consensus       141 nN~~va~~LLqhgaDVnA~t~g~ltpLhlaa~~rn~r~t~~~Ll~dryi~pg~~nn~eeta~  202 (228)
T KOG0512|consen  141 NNFEVAGRLLQHGADVNAQTKGLLTPLHLAAGNRNSRDTLELLLHDRYIHPGLKNNLEETAF  202 (228)
T ss_pred             cchhHHHHHHhccCcccccccccchhhHHhhcccchHHHHHHHhhccccChhhhcCccchHH
Confidence            999999999999999999999999999999998765 4566665 46788888999998886

>PHA02989 ankyrin repeat protein; Provisional

Probab=99.91  E-value=4.8e-23  Score=146.92  Aligned_cols=144  Identities=19%  Similarity=0.203  Sum_probs=102.3

Q ss_pred             CcCcCCCCCChHHHHHHHhC--CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC------CHHHHHHHHhcCCCCcc
Q 031838            2 DMDIDQTIKDKDLFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG------HPEVVEILLSVDESANV   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~------~~~~~~~ll~~~~~~~~   73 (152)
                      |++.. ..|.++++.++..+  +.++|+.|++.|  .+++.++ .+.||||.|+..+      ..+++++|++.|++   
T Consensus        28 dvN~~-~~g~t~l~~~~~~~~~~~~iv~~Ll~~G--Advn~~~-~~~tpL~~a~~~~~~~~~~~~~iv~~Ll~~Gad---  100 (494)
T PHA02989         28 DVNEE-YRGNSILLLYLKRKDVKIKIVKLLIDNG--ADVNYKG-YIETPLCAVLRNREITSNKIKKIVKLLLKFGAD---  100 (494)
T ss_pred             Ccccc-cCCCCHHHHHHhcCCCChHHHHHHHHcC--CCccCCC-CCCCcHHHHHhccCcchhhHHHHHHHHHHCCCC---
Confidence            45555 45677776555443  578888888876  4555554 4578888776543      35678888887777   


Q ss_pred             ccccCCCCChhhHHHHhc---CCHHHHHHHHHcCCCC-cccCCCCCcHHHHHHHc--CCHHHHHHHHhcCCCCCC-cccc
Q 031838           74 VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADV-NLKNDGGRTALHYAASK--GWLKIVELLISRGAKINS-KDKA  146 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~-~~~~~~~~~pl~~a~~~--~~~~~~~~Ll~~g~~~~~-~~~~  146 (152)
                      ++.++..|.||||.|+..   ++.+++++|++.|+++ +..+..|.||||+|+..  ++.+++++|+++|++++. .+..
T Consensus       101 in~~d~~g~tpL~~a~~~~~~~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~~~~~~~~~iv~~Ll~~Gadi~~~~~~~  180 (494)
T PHA02989        101 INLKTFNGVSPIVCFIYNSNINNCDMLRFLLSKGINVNDVKNSRGYNLLHMYLESFSVKKDVIKILLSFGVNLFEKTSLY  180 (494)
T ss_pred             CCCCCCCCCcHHHHHHHhcccCcHHHHHHHHHCCCCcccccCCCCCCHHHHHHHhccCCHHHHHHHHHcCCCcccccccc
Confidence            566677788888876654   5678888888888888 67777888888877653  467888888888888877 5677


Q ss_pred             ccccCC
Q 031838          147 CNFLYQ  152 (152)
Q Consensus       147 ~~t~l~  152 (152)
                      |.||||
T Consensus       181 g~tpL~  186 (494)
T PHA02989        181 GLTPMN  186 (494)
T ss_pred             CCChHH
Confidence            888764

>KOG0502 consensus Integral membrane ankyrin-repeat protein Kidins220 (protein kinase D substrate) [General function prediction only]

Probab=99.91  E-value=8.2e-24  Score=131.19  Aligned_cols=137  Identities=25%  Similarity=0.284  Sum_probs=123.6

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      -.+-+++.+++.+..++.+..+.++    .++..|+.|.|||.||+.+|+++++++|+..|+++..   ...+..++|+.
T Consensus       127 ~~p~s~~slsVhql~L~~~~~~~~n----~VN~~De~GfTpLiWAaa~G~i~vV~fLL~~GAdp~~---lgk~resALsL  199 (296)
T KOG0502|consen  127 LMPWSPLSLSVHQLHLDVVDLLVNN----KVNACDEFGFTPLIWAAAKGHIPVVQFLLNSGADPDA---LGKYRESALSL  199 (296)
T ss_pred             cccCChhhHHHHHHHHHHHHHHhhc----cccCccccCchHhHHHHhcCchHHHHHHHHcCCChhh---hhhhhhhhHhH
Confidence            3466888999998888877766664    3778899999999999999999999999999998544   35678899999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      |+..|..+++++|+.++.++|..|++|.|||-+|++.++..|++.|+..|++++..+..|.+|+
T Consensus       200 At~ggytdiV~lLL~r~vdVNvyDwNGgTpLlyAvrgnhvkcve~Ll~sGAd~t~e~dsGy~~m  263 (296)
T KOG0502|consen  200 ATRGGYTDIVELLLTREVDVNVYDWNGGTPLLYAVRGNHVKCVESLLNSGADVTQEDDSGYWIM  263 (296)
T ss_pred             HhcCChHHHHHHHHhcCCCcceeccCCCceeeeeecCChHHHHHHHHhcCCCcccccccCCcHH
Confidence            9999999999999999999999999999999999999999999999999999999999998874

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.90  E-value=1.8e-23  Score=155.90  Aligned_cols=146  Identities=33%  Similarity=0.408  Sum_probs=116.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++.....|.|+|+.|...|+.+.++-+++.+  .+.+.....+.+++|.+...+...+++.+++.+.+   .+.++.++
T Consensus       466 ~~n~~s~~G~T~Lhlaaq~Gh~~~~~llle~~--~~~~~~~~~~l~~lhla~~~~~v~~~~~l~~~ga~---v~~~~~r~  540 (1143)
T KOG4177|consen  466 DPNAVSKQGFTPLHLAAQEGHTEVVQLLLEGG--ANDNLDAKKGLTPLHLAADEDTVKVAKILLEHGAN---VDLRTGRG  540 (1143)
T ss_pred             CcchhccccCcchhhhhccCCchHHHHhhhcC--CccCccchhccchhhhhhhhhhHHHHHHHhhcCCc---eehhcccc
Confidence            45555666778888888888888777777765  45566666677777777777777777777766666   66677788


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||.|+.+|+..++++|+++|++++.++..|+||||.|+..|+.+|+.+|+++|++++..+..|.|||+
T Consensus       541 ~TpLh~A~~~g~v~~VkfLLe~gAdv~ak~~~G~TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~  611 (1143)
T KOG4177|consen  541 YTPLHVAVHYGNVDLVKFLLEHGADVNAKDKLGYTPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLH  611 (1143)
T ss_pred             cchHHHHHhcCCchHHHHhhhCCccccccCCCCCChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhH
Confidence            88888888888888888888888888888888888888888888888888888888888888888888875

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.90  E-value=1.1e-23  Score=138.88  Aligned_cols=144  Identities=28%  Similarity=0.362  Sum_probs=127.9

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC-----CHHHHHHHHhcCCCCcccccc
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG-----HPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~-----~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      +|.-+..|+|.||+|+...|.+.|+.|++.+ -.+++..+..|.||+++++...     +.++|..|+..|.    +|.+
T Consensus       261 VNlaDsNGNTALHYsVSHaNF~VV~~LLDSg-vC~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mgn----VNaK  335 (452)
T KOG0514|consen  261 VNLADSNGNTALHYAVSHANFDVVSILLDSG-VCDVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMGD----VNAK  335 (452)
T ss_pred             hhhhcCCCCeeeeeeecccchHHHHHHhccC-cccccccccccccHHHHHHHHhhcchhhHHHHHHHHhccC----cchh
Confidence            5677899999999999999999999999998 4789999999999999987543     5677888876543    3333


Q ss_pred             -CCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCccccccccC
Q 031838           78 -DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACNFLY  151 (152)
Q Consensus        78 -~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l  151 (152)
                       ...|.|+|++|+..|+.++++.|+..|+++|.+|.+|.|+|+.|+.+|+.|++++||. .+++....|..|.|+|
T Consensus       336 AsQ~gQTALMLAVSHGr~d~vk~LLacgAdVNiQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl  411 (452)
T KOG0514|consen  336 ASQHGQTALMLAVSHGRVDMVKALLACGADVNIQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTAL  411 (452)
T ss_pred             hhhhcchhhhhhhhcCcHHHHHHHHHccCCCccccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhh
Confidence             4579999999999999999999999999999999999999999999999999999986 5699999999999987

>PHA02741 hypothetical protein; Provisional

Probab=99.90  E-value=5.3e-23  Score=127.72  Aligned_cols=115  Identities=27%  Similarity=0.389  Sum_probs=100.0

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcC---CCCccccccCCCCChhhHHHHhcCC----HHHHHHHHHcCCCCccc
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVD---ESANVVNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLK  110 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~---~~~~~~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~~  110 (152)
                      ++.++..|.||||+|+..|+.++++.++...   ..+..++.++..|.||||+|+..++    .+++++|+..|++++.+
T Consensus        14 ~~~~~~~g~t~Lh~Aa~~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~~g~~~~~~~ii~~Ll~~gadin~~   93 (169)
T PHA02741         14 IAEKNSEGENFFHEAARCGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAEKHEAQLAAEIIDHLIELGADINAQ   93 (169)
T ss_pred             hhccccCCCCHHHHHHHcCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHHcCChHHHHHHHHHHHHcCCCCCCC
Confidence            3456778999999999999999999886432   1112267788999999999999998    58899999999999998


Q ss_pred             CC-CCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCccccccccCC
Q 031838          111 ND-GGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       111 ~~-~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                      +. .|.||||+|+..++.+++++|++ .|++++.+|..|+||||
T Consensus        94 ~~~~g~TpLh~A~~~~~~~iv~~Ll~~~g~~~~~~n~~g~tpL~  137 (169)
T PHA02741         94 EMLEGDTALHLAAHRRDHDLAEWLCCQPGIDLHFCNADNKSPFE  137 (169)
T ss_pred             CcCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCCHHH
Confidence            85 89999999999999999999997 59999999999999986

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.90  E-value=3.6e-23  Score=141.97  Aligned_cols=147  Identities=28%  Similarity=0.359  Sum_probs=134.9

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc---------
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---------   73 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------   73 (152)
                      .+..+..|.|++|.|+.-.+.++|+++++++  .+++..|..|+||+|.|+..|+..++.+++..+++...         
T Consensus        66 ~~~~n~DglTalhq~~id~~~e~v~~l~e~g--a~Vn~~d~e~wtPlhaaascg~~~i~~~li~~gA~~~avNsdg~~P~  143 (527)
T KOG0505|consen   66 PNLCNVDGLTALHQACIDDNLEMVKFLVENG--ANVNAQDNEGWTPLHAAASCGYLNIVEYLIQHGANLLAVNSDGNMPY  143 (527)
T ss_pred             ccccCCccchhHHHHHhcccHHHHHHHHHhc--CCccccccccCCcchhhcccccHHHHHHHHHhhhhhhhccCCCCCcc
Confidence            4566778999999999999999999999998  79999999999999999999999999999998764322         


Q ss_pred             -----------------------------------------------ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCC
Q 031838           74 -----------------------------------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD  106 (152)
Q Consensus        74 -----------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~  106 (152)
                                                                     ....+..|.|.+|.|+..|..++.++|++.|.+
T Consensus       144 dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~rG~T~lHvAaa~Gy~e~~~lLl~ag~~  223 (527)
T KOG0505|consen  144 DLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHARGATALHVAAANGYTEVAALLLQAGYS  223 (527)
T ss_pred             ccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhccccccccccccchHHHHHHhhhHHHHHHHHHHhccC
Confidence                                                           344455689999999999999999999999999


Q ss_pred             CcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838          107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus       107 ~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      ++.+|.+|++|||.|+..+..++++.|+++|++++....+|.|||
T Consensus       224 ~~~~D~dgWtPlHAAA~Wg~~~~~elL~~~ga~~d~~t~~g~~p~  268 (527)
T KOG0505|consen  224 VNIKDYDGWTPLHAAAHWGQEDACELLVEHGADMDAKTKMGETPL  268 (527)
T ss_pred             cccccccCCCcccHHHHhhhHhHHHHHHHhhcccchhhhcCCCCc
Confidence            999999999999999999999999999999999999999999997

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.90  E-value=4.8e-22  Score=132.07  Aligned_cols=123  Identities=17%  Similarity=0.223  Sum_probs=106.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccC----CCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccccc-CCCC
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR----NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV-DEEG   81 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~   81 (152)
                      +....++|+.|++.|+.++++.|++.|  .+++.+    +..|.||||+|+..++.+++++|+++|++   ++.+ +..|
T Consensus        30 ~~~~~~lL~~A~~~~~~eivk~LL~~G--AdiN~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GAD---VN~~~~~~g  104 (300)
T PHA02884         30 KICIANILYSSIKFHYTDIIDAILKLG--ADPEAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGAD---VNRYAEEAK  104 (300)
T ss_pred             cCCCCHHHHHHHHcCCHHHHHHHHHCC--CCccccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---cCcccCCCC
Confidence            334567888899999999999999998  466665    45899999999999999999999999988   5654 4579


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI  134 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll  134 (152)
                      .||||.|+..++.+++++|+..|++++.++..|.||+++|+..++.+++..+.
T Consensus       105 ~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~~A~~~~~~~~~~~~~  157 (300)
T PHA02884        105 ITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIELALMICNNFLAFMIC  157 (300)
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHhCChhHHHHhc
Confidence            99999999999999999999999999999999999999999877777665444

>PHA02795 ankyrin-like protein; Provisional

Probab=99.89  E-value=5e-22  Score=137.00  Aligned_cols=136  Identities=22%  Similarity=0.208  Sum_probs=118.8

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccC-----CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR-----NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ..+.+++|.|+..++.+++++|++.+.. ..+..     +..+.+++|.|...+..+++++|++.|++   ++.++..|.
T Consensus       147 ~~~~t~lh~A~~~~~~eIVk~Lls~Ga~-~~n~~~~~l~~~~~~t~l~~a~~~~~~eIve~LIs~GAD---IN~kD~~G~  222 (437)
T PHA02795        147 IECLNAYFRGICKKESSVVEFILNCGIP-DENDVKLDLYKIIQYTRGFLVDEPTVLEIYKLCIPYIED---INQLDAGGR  222 (437)
T ss_pred             CCCCCHHHHHHHcCcHHHHHHHHhcCCc-ccccccchhhhhhccchhHHHHhcCHHHHHHHHHhCcCC---cCcCCCCCC
Confidence            3457899999999999999999999842 11111     23477899999999999999999999988   788899999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC--------HHHHHHHHhcCCCCCCccccc
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW--------LKIVELLISRGAKINSKDKAC  147 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~--------~~~~~~Ll~~g~~~~~~~~~~  147 (152)
                      ||||+|+..|+.+++++|++.|++++.++..|.||||+|+..|+        .+++++|+++|++++....++
T Consensus       223 TpLh~Aa~~g~~eiVelLL~~GAdIN~~d~~G~TpLh~Aa~~g~~~~~~~~~~eIvelLL~~gadI~~~~~~~  295 (437)
T PHA02795        223 TLLYRAIYAGYIDLVSWLLENGANVNAVMSNGYTCLDVAVDRGSVIARRETHLKILEILLREPLSIDCIKLAI  295 (437)
T ss_pred             CHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCcccccccHHHHHHHHHhCCCCCCchhHHh
Confidence            99999999999999999999999999999999999999999884        689999999999998766543

>PHA02730 ankyrin-like protein; Provisional

Probab=99.88  E-value=8.2e-22  Score=141.79  Aligned_cols=149  Identities=16%  Similarity=0.163  Sum_probs=113.0

Q ss_pred             CcC-cCCCCCChHHHHHHHhC---CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCcc--
Q 031838            2 DMD-IDQTIKDKDLFKAAETG---DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG--HPEVVEILLSVDESANV--   73 (152)
Q Consensus         2 ~~~-~~~~~~~~~l~~a~~~~---~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~--   73 (152)
                      +++ .++..|.|+||+|+..|   +.++|+.|++.|  .+++.+|..|.||||+|+..+  +.+++++|+..+.+...  
T Consensus        32 ~in~~kd~~G~TaLh~A~~~~~~~~~eivklLLs~G--Adin~kD~~G~TPLh~Aa~~~~~~~eIv~~Ll~~~~~~~~~~  109 (672)
T PHA02730         32 NLSKHIDRRGNNALHCYVSNKCDTDIKIVRLLLSRG--VERLCRNNEGLTPLGVYSKRKYVKSQIVHLLISSYSNASNEL  109 (672)
T ss_pred             chhhhcCCCCCcHHHHHHHcCCcCcHHHHHHHHhCC--CCCcccCCCCCChHHHHHHcCCCcHHHHHHHHhcCCCCCccc
Confidence            344 56678999999999997   599999999987  788899999999999999977  79999999988653210  


Q ss_pred             --------------------------c-------cccC-----CCCChhhHHHHhcCCHHHHHHHHHcCCCCc-------
Q 031838           74 --------------------------V-------NAVD-----EEGWAPIHSAASIGNVTIVEMLLSKGADVN-------  108 (152)
Q Consensus        74 --------------------------~-------~~~~-----~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~-------  108 (152)
                                                +       +...     ..|.+|++++...++.+++++|++.|++++       
T Consensus       110 ~~~~~d~~l~~y~~s~n~~~~~vk~Li~~~~~~~~~~~~~~~~~~~~~~~yl~~~~~~~eIvklLi~~g~~v~g~~~~~~  189 (672)
T PHA02730        110 TSNINDFDLYSYMSSDNIDLRLLKYLIVDKRIRPSKNTNYYIHCLGLVDIYVTTPNPRPEVLLWLLKSECYSTGYVFRSC  189 (672)
T ss_pred             ccccCCchHHHHHHhcCCcHHHHHHHHHhcCCChhhhhhhhccccchhhhhHhcCCCchHHHHHHHHcCCcccccccccc
Confidence                                      1       0000     146678888888888888888888888874       


Q ss_pred             ccCCCCCc-HHHHH------HHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          109 LKNDGGRT-ALHYA------ASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       109 ~~~~~~~~-pl~~a------~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..+....+ .|+++      ...+..+++++|+++|++++.++..|+||||
T Consensus       190 ~~~~~~c~~~l~~~il~~~~~~~n~~eiv~lLIs~GadIN~kd~~G~TpLh  240 (672)
T PHA02730        190 MYDSDRCKNSLHYYILSHRESESLSKDVIKCLIDNNVSIHGRDEGGSLPIQ  240 (672)
T ss_pred             cccCCccchhHHHHHHhhhhhhccCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            12222223 34422      3456789999999999999999999999996

>PHA02884 ankyrin repeat protein; Provisional

Probab=99.88  E-value=7.8e-22  Score=131.05  Aligned_cols=112  Identities=22%  Similarity=0.283  Sum_probs=98.8

Q ss_pred             cccCCCCCch-HHHHHHHcCCHHHHHHHHhcCCCCcccccc----CCCCChhhHHHHhcCCHHHHHHHHHcCCCCccc-C
Q 031838           38 LSLRNDDDRT-LLHVAASCGHPEVVEILLSVDESANVVNAV----DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-N  111 (152)
Q Consensus        38 ~~~~~~~g~t-~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~----~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~  111 (152)
                      +..+|..|.+ +|+.|+..++.+++++|++.|+++   +.+    +..|.||||+|+..++.+++++|+++|++++.. +
T Consensus        25 ~~~~d~~~~~~lL~~A~~~~~~eivk~LL~~GAdi---N~~~~~sd~~g~TpLh~Aa~~~~~eivklLL~~GADVN~~~~  101 (300)
T PHA02884         25 IKKKNKICIANILYSSIKFHYTDIIDAILKLGADP---EAPFPLSENSKTNPLIYAIDCDNDDAAKLLIRYGADVNRYAE  101 (300)
T ss_pred             hhccCcCCCCHHHHHHHHcCCHHHHHHHHHCCCCc---cccCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcCcccC
Confidence            3345666665 577778889999999999999884   443    468999999999999999999999999999986 4


Q ss_pred             CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       112 ~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..|.||||.|+..++.+++++|+++|++++.++..|.||||
T Consensus       102 ~~g~TpLh~Aa~~~~~eivklLL~~GAdin~kd~~G~TpL~  142 (300)
T PHA02884        102 EAKITPLYISVLHGCLKCLEILLSYGADINIQTNDMVTPIE  142 (300)
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            67999999999999999999999999999999999999986

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=99.88  E-value=5.8e-22  Score=147.99  Aligned_cols=144  Identities=32%  Similarity=0.405  Sum_probs=133.5

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      .+++...+.+++|.|...+....++.+++.+  .+++.++..|.||||.||..|+.++|++|++++.+   .+.+++.|+
T Consensus       500 ~~~~~~~~l~~lhla~~~~~v~~~~~l~~~g--a~v~~~~~r~~TpLh~A~~~g~v~~VkfLLe~gAd---v~ak~~~G~  574 (1143)
T KOG4177|consen  500 DNLDAKKGLTPLHLAADEDTVKVAKILLEHG--ANVDLRTGRGYTPLHVAVHYGNVDLVKFLLEHGAD---VNAKDKLGY  574 (1143)
T ss_pred             cCccchhccchhhhhhhhhhHHHHHHHhhcC--CceehhcccccchHHHHHhcCCchHHHHhhhCCcc---ccccCCCCC
Confidence            4566778899999999999999999999987  78889999999999999999999999999999998   777889999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-----CCCccccccccC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-----INSKDKACNFLY  151 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l  151 (152)
                      ||||.|+..|+.+|+++|+++|++++..+.+|.|||+.|.+.|+.++++.|+..++.     ...++..|.+|.
T Consensus       575 TPLH~Aa~~G~~~i~~LLlk~GA~vna~d~~g~TpL~iA~~lg~~~~~k~l~~~~~~~~~~~~~~e~~~g~~p~  648 (1143)
T KOG4177|consen  575 TPLHQAAQQGHNDIAELLLKHGASVNAADLDGFTPLHIAVRLGYLSVVKLLKVVTATPAATDPVKENRKGAVPE  648 (1143)
T ss_pred             ChhhHHHHcChHHHHHHHHHcCCCCCcccccCcchhHHHHHhcccchhhHHHhccCccccccchhhhhcccChh
Confidence            999999999999999999999999999999999999999999999999999999988     666777777764

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.87  E-value=3.7e-21  Score=107.45  Aligned_cols=89  Identities=45%  Similarity=0.739  Sum_probs=68.6

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 031838           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (152)
Q Consensus        49 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~  128 (152)
                      ||+|++.++.++++++++.+.+   .+.    |.||+|+|+..|+.+++++|++.|++++.++..|.||+++|+..++.+
T Consensus         1 L~~A~~~~~~~~~~~ll~~~~~---~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~   73 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKGAD---INL----GNTALHYAAENGNLEIVKLLLENGADINSQDKNGNTALHYAAENGNLE   73 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTTST---TTS----SSBHHHHHHHTTTHHHHHHHHHTTTCTT-BSTTSSBHHHHHHHTTHHH
T ss_pred             CHHHHHcCCHHHHHHHHHCcCC---CCC----CCCHHHHHHHcCCHHHHHHHHHhcccccccCCCCCCHHHHHHHcCCHH
Confidence            6788888888888888876654   222    677888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHhcCCCCCCcc
Q 031838          129 IVELLISRGAKINSKD  144 (152)
Q Consensus       129 ~~~~Ll~~g~~~~~~~  144 (152)
                      ++++|+++|++++.+|
T Consensus        74 ~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   74 IVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHcCCCCCCcC
Confidence            8888888888887764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.87  E-value=1.7e-21  Score=144.73  Aligned_cols=145  Identities=26%  Similarity=0.260  Sum_probs=101.6

Q ss_pred             CcCcCCCCCChHHH-HHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCc-----
Q 031838            2 DMDIDQTIKDKDLF-KAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESAN-----   72 (152)
Q Consensus         2 ~~~~~~~~~~~~l~-~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~-----   72 (152)
                      |+|..+..|.++|| .|+..++.+.++.|++.+.      ++..|.||||.|+..+   ...++..+...+....     
T Consensus        44 ~in~~d~~G~t~Lh~~A~~~~~~eiv~lLl~~g~------~~~~G~T~Lh~A~~~~~~~v~~ll~~l~~~~~~~~~~~~~  117 (743)
T TIGR00870        44 NINCPDRLGRSALFVAAIENENLELTELLLNLSC------RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELA  117 (743)
T ss_pred             CCCCcCccchhHHHHHHHhcChHHHHHHHHhCCC------CCCcChHHHHHHHhccHHHHHHHHHHHhhcccccCchhhh
Confidence            44555566667777 6666666666666666541      4555667777666521   1122222222211100     


Q ss_pred             --cccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHHHhc
Q 031838           73 --VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus        73 --~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                        ........|.||||.|+..++.+++++|++.|++++.++              ..|.+|++.|+..++.+++++|+++
T Consensus       118 ~~~~~~~~~~G~TpLhlAa~~~~~eiVklLL~~GAdv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~  197 (743)
T TIGR00870       118 NDQYTSEFTPGITALHLAAHRQNYEIVKLLLERGASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSED  197 (743)
T ss_pred             ccccccccCCCCcHHHHHHHhCCHHHHHHHHhCCCCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcC
Confidence              001112468999999999999999999999999988653              2588999999999999999999999


Q ss_pred             CCCCCCccccccccCC
Q 031838          137 GAKINSKDKACNFLYQ  152 (152)
Q Consensus       137 g~~~~~~~~~~~t~l~  152 (152)
                      |++++..|+.|+||||
T Consensus       198 gadin~~d~~g~T~Lh  213 (743)
T TIGR00870       198 PADILTADSLGNTLLH  213 (743)
T ss_pred             CcchhhHhhhhhHHHH
Confidence            9999999999999987

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>PHA02917 ankyrin-like protein; Provisional

Probab=99.86  E-value=7.7e-21  Score=138.64  Aligned_cols=137  Identities=20%  Similarity=0.235  Sum_probs=107.7

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHH--HcCCHHHHHHHHhcCCCCccccccCCCC--------
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA--SCGHPEVVEILLSVDESANVVNAVDEEG--------   81 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~--~~~~~~~~~~ll~~~~~~~~~~~~~~~~--------   81 (152)
                      .+++.|+..++.+++++|++.|  .+++.++..|+||||.++  ..++.+++++|++.|++....+..+..|        
T Consensus       105 ~~~~~a~~~~~~e~vk~Ll~~G--adin~~d~~g~T~L~~~~a~~~~~~eivklLi~~Ga~vn~~d~~~~~g~~~~~~~~  182 (661)
T PHA02917        105 IFSYMKSKNVDVDLIKVLVEHG--FDLSVKCENHRSVIENYVMTDDPVPEIIDLFIENGCSVLYEDEDDEYGYAYDDYQP  182 (661)
T ss_pred             hHHHHHhhcCCHHHHHHHHHcC--CCCCccCCCCccHHHHHHHccCCCHHHHHHHHHcCCCccccccccccccccccccc
Confidence            4455566666778888888776  688889999999999654  5689999999999998853222222233        


Q ss_pred             ---ChhhHHHHh-----------cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH--HHHHHHHhcCCCCC----
Q 031838           82 ---WAPIHSAAS-----------IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL--KIVELLISRGAKIN----  141 (152)
Q Consensus        82 ---~t~l~~a~~-----------~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~--~~~~~Ll~~g~~~~----  141 (152)
                         .||||+|+.           .++.+++++|++.|++++.+|..|.||||+|+..++.  ++++.|++ |++.+    
T Consensus       183 ~~~~t~L~~a~~~~~~~~~~~~~~~~~eiv~~Li~~Gadvn~~d~~G~TpLh~A~~~g~~~~eivk~Li~-g~d~~~~~~  261 (661)
T PHA02917        183 RNCGTVLHLYIISHLYSESDTRAYVRPEVVKCLINHGIKPSSIDKNYCTALQYYIKSSHIDIDIVKLLMK-GIDNTAYSY  261 (661)
T ss_pred             cccccHHHHHHhhcccccccccccCcHHHHHHHHHCCCCcccCCCCCCcHHHHHHHcCCCcHHHHHHHHh-CCccccccc
Confidence               599999986           4589999999999999999999999999999999985  79999975 88775    


Q ss_pred             CccccccccC
Q 031838          142 SKDKACNFLY  151 (152)
Q Consensus       142 ~~~~~~~t~l  151 (152)
                      ..+..|.||+
T Consensus       262 ~~~~~~~~~~  271 (661)
T PHA02917        262 IDDLTCCTRG  271 (661)
T ss_pred             ccCcccccch
Confidence            3455566554

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.86  E-value=1.8e-22  Score=130.19  Aligned_cols=116  Identities=36%  Similarity=0.438  Sum_probs=74.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++.-+..|.+|||+|++.|....++.|+..+  ..++..+....||||.|+.+|+.++++.|++..++   ++..+..|
T Consensus        26 dln~gddhgfsplhwaakegh~aivemll~rg--arvn~tnmgddtplhlaaahghrdivqkll~~kad---vnavnehg  100 (448)
T KOG0195|consen   26 DLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRG--ARVNSTNMGDDTPLHLAAAHGHRDIVQKLLSRKAD---VNAVNEHG  100 (448)
T ss_pred             ccccccccCcchhhhhhhcccHHHHHHHHhcc--cccccccCCCCcchhhhhhcccHHHHHHHHHHhcc---cchhhccC
Confidence            44555556666666666666666666666665  45555555556666666666666666666666665   44555566


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~  122 (152)
                      .||||+||..|.-++.+-|+..|+.+++.+..|.||+..|.
T Consensus       101 ntplhyacfwgydqiaedli~~ga~v~icnk~g~tpldkak  141 (448)
T KOG0195|consen  101 NTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLDKAK  141 (448)
T ss_pred             CCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchhhhc
Confidence            66666666666666666666666666666666666666653

>PHA02743 Viral ankyrin protein; Provisional

Probab=99.86  E-value=3.6e-21  Score=119.10  Aligned_cols=113  Identities=22%  Similarity=0.304  Sum_probs=95.5

Q ss_pred             ccccCCCCCchHHHHHHHcCCH----HHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHH---HHHHHHcCCCCcc
Q 031838           37 SLSLRNDDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI---VEMLLSKGADVNL  109 (152)
Q Consensus        37 ~~~~~~~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~---~~~l~~~~~~~~~  109 (152)
                      ++...+..+.+++|.||+.|+.    ++++++...+..   ++..+..|+||||+|+..++.+.   +++|++.|++++.
T Consensus        12 ~~~~~~~~~~~~l~~a~~~g~~~~l~~~~~~l~~~g~~---~~~~d~~g~t~Lh~Aa~~g~~~~~~~i~~Ll~~Gadin~   88 (166)
T PHA02743         12 GAVEIDEDEQNTFLRICRTGNIYELMEVAPFISGDGHL---LHRYDHHGRQCTHMVAWYDRANAVMKIELLVNMGADINA   88 (166)
T ss_pred             HHhhhccCCCcHHHHHHHcCCHHHHHHHHHHHhhcchh---hhccCCCCCcHHHHHHHhCccCHHHHHHHHHHcCCCCCC
Confidence            3444566778899999999998    444555555544   67778899999999999987654   7899999999999


Q ss_pred             cC-CCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCccccccccCC
Q 031838          110 KN-DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       110 ~~-~~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                      ++ ..|.||||+|+..++.+++++|+. .|++++.++..|.||||
T Consensus        89 ~d~~~g~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~tpL~  133 (166)
T PHA02743         89 RELGTGNTLLHIAASTKNYELAEWLCRQLGVNLGAINYQHETAYH  133 (166)
T ss_pred             CCCCCCCcHHHHHHHhCCHHHHHHHHhccCCCccCcCCCCCCHHH
Confidence            98 489999999999999999999995 89999999999999986

>PHA02730 ankyrin-like protein; Provisional

Probab=99.85  E-value=5e-20  Score=132.73  Aligned_cols=77  Identities=25%  Similarity=0.324  Sum_probs=36.5

Q ss_pred             HHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHH--cCCHHHHHHHHhcC
Q 031838           61 VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAAS--KGWLKIVELLISRG  137 (152)
Q Consensus        61 ~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~pl~~a~~--~~~~~~~~~Ll~~g  137 (152)
                      +++|+.+|++   ++.+|..|.||||+|+..++.+++++|++.|++++..+. .|.||++.|+.  .++.++++.|+++|
T Consensus       445 vk~LIs~GAD---INakD~~G~TPLh~Aa~~~~~eive~LI~~GAdIN~~d~~~g~TaL~~Aa~~~~~~~eIv~~LLs~g  521 (672)
T PHA02730        445 FDILSKYMDD---IDMIDNENKTLLYYAVDVNNIQFARRLLEYGASVNTTSRSIINTAIQKSSYRRENKTKLVDLLLSYH  521 (672)
T ss_pred             HHHHHhcccc---hhccCCCCCCHHHHHHHhCCHHHHHHHHHCCCCCCCCCCcCCcCHHHHHHHhhcCcHHHHHHHHHcC
Confidence            4444444444   344444455555555554445555555544555444443 24455554443  23444555555544


Q ss_pred             CCC
Q 031838          138 AKI  140 (152)
Q Consensus       138 ~~~  140 (152)
                      +++
T Consensus       522 a~i  524 (672)
T PHA02730        522 PTL  524 (672)
T ss_pred             CCH
Confidence            443

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=99.85  E-value=1.3e-20  Score=121.62  Aligned_cols=133  Identities=35%  Similarity=0.417  Sum_probs=118.4

Q ss_pred             HHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHH
Q 031838           16 KAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT   95 (152)
Q Consensus        16 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~   95 (152)
                      -=|+.|+-..|+..++.. ..+++..|..|.+|||+||+.|+..+++.|+.+|+-   ++..+-...||||.|+..|+.+
T Consensus         6 ~wcregna~qvrlwld~t-ehdln~gddhgfsplhwaakegh~aivemll~rgar---vn~tnmgddtplhlaaahghrd   81 (448)
T KOG0195|consen    6 GWCREGNAFQVRLWLDDT-EHDLNVGDDHGFSPLHWAAKEGHVAIVEMLLSRGAR---VNSTNMGDDTPLHLAAAHGHRD   81 (448)
T ss_pred             hhhhcCCeEEEEEEecCc-ccccccccccCcchhhhhhhcccHHHHHHHHhcccc---cccccCCCCcchhhhhhcccHH
Confidence            346677777776666654 367889999999999999999999999999999887   4555555679999999999999


Q ss_pred             HHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           96 IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        96 ~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +++.|++.+++++..+..|.|||||||..|.-.+++-|+..|+.++.-|+.|+|||.
T Consensus        82 ivqkll~~kadvnavnehgntplhyacfwgydqiaedli~~ga~v~icnk~g~tpld  138 (448)
T KOG0195|consen   82 IVQKLLSRKADVNAVNEHGNTPLHYACFWGYDQIAEDLISCGAAVNICNKKGMTPLD  138 (448)
T ss_pred             HHHHHHHHhcccchhhccCCCchhhhhhhcHHHHHHHHHhccceeeecccCCCCchh
Confidence            999999999999999999999999999999999999999999999999999999973

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=99.84  E-value=4.3e-20  Score=103.14  Aligned_cols=89  Identities=39%  Similarity=0.591  Sum_probs=78.4

Q ss_pred             HHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCC
Q 031838           14 LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN   93 (152)
Q Consensus        14 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~   93 (152)
                      |+.|++.|+++++++|++.+  ..++.    |.||||+|+..|+.+++++|++.+.+   ++.++..|.||||.|+..++
T Consensus         1 L~~A~~~~~~~~~~~ll~~~--~~~~~----~~~~l~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~   71 (89)
T PF12796_consen    1 LHIAAQNGNLEILKFLLEKG--ADINL----GNTALHYAAENGNLEIVKLLLENGAD---INSQDKNGNTALHYAAENGN   71 (89)
T ss_dssp             HHHHHHTTTHHHHHHHHHTT--STTTS----SSBHHHHHHHTTTHHHHHHHHHTTTC---TT-BSTTSSBHHHHHHHTTH
T ss_pred             CHHHHHcCCHHHHHHHHHCc--CCCCC----CCCHHHHHHHcCCHHHHHHHHHhccc---ccccCCCCCCHHHHHHHcCC
Confidence            78999999999999999976  34333    88999999999999999999999887   67778999999999999999


Q ss_pred             HHHHHHHHHcCCCCcccC
Q 031838           94 VTIVEMLLSKGADVNLKN  111 (152)
Q Consensus        94 ~~~~~~l~~~~~~~~~~~  111 (152)
                      .+++++|+++|++++.+|
T Consensus        72 ~~~~~~Ll~~g~~~~~~n   89 (89)
T PF12796_consen   72 LEIVKLLLEHGADVNIRN   89 (89)
T ss_dssp             HHHHHHHHHTTT-TTSS-
T ss_pred             HHHHHHHHHcCCCCCCcC
Confidence            999999999999988764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02736 Viral ankyrin protein; Provisional

Probab=99.84  E-value=5.9e-21  Score=116.97  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=91.4

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCC--CccccccCCCCChhhHHHHhcCCHH---HHHHHHHcCCCCcccCC
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDES--ANVVNAVDEEGWAPIHSAASIGNVT---IVEMLLSKGADVNLKND  112 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~~~~t~l~~a~~~~~~~---~~~~l~~~~~~~~~~~~  112 (152)
                      ...++..|.||||+|++.|+...+........+  .......+..|.||||+|+..++.+   ++++|++.|++++.++.
T Consensus        10 ~~~~d~~g~tpLh~A~~~g~~~~l~~~~~~~~~~~~~~~~~~d~~g~t~Lh~a~~~~~~~~~e~v~~Ll~~gadin~~~~   89 (154)
T PHA02736         10 ASEPDIEGENILHYLCRNGGVTDLLAFKNAISDENRYLVLEYNRHGKQCVHIVSNPDKADPQEKLKLLMEWGADINGKER   89 (154)
T ss_pred             HHhcCCCCCCHHHHHHHhCCHHHHHHHHHHhcchhHHHHHHhcCCCCEEEEeecccCchhHHHHHHHHHHcCCCccccCC
Confidence            345677899999999999984322111111111  1123456788999999999998864   68899999999999884


Q ss_pred             -CCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCccccccccCC
Q 031838          113 -GGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       113 -~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                       .|.||||+|+..++.+++++|+. .|++++.++..|+||||
T Consensus        90 ~~g~T~Lh~A~~~~~~~i~~~Ll~~~g~d~n~~~~~g~tpL~  131 (154)
T PHA02736         90 VFGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYY  131 (154)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCCCCCCccccCCCCCHHH
Confidence             89999999999999999999997 59999999999999986

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=99.84  E-value=1.7e-20  Score=112.55  Aligned_cols=104  Identities=33%  Similarity=0.401  Sum_probs=97.8

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 031838           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (152)
Q Consensus        47 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~  126 (152)
                      ..+-+|+..+....|+.|++..++.  ++.+|..+.||||.|+..|+.++++.|+..|++++.+...|+||||.||...+
T Consensus        65 rl~lwaae~nrl~eV~~lL~e~an~--vNtrD~D~YTpLHRAaYn~h~div~~ll~~gAn~~a~T~~GWTPLhSAckWnN  142 (228)
T KOG0512|consen   65 RLLLWAAEKNRLTEVQRLLSEKANH--VNTRDEDEYTPLHRAAYNGHLDIVHELLLSGANKEAKTNEGWTPLHSACKWNN  142 (228)
T ss_pred             HHHHHHHhhccHHHHHHHHHhcccc--ccccccccccHHHHHHhcCchHHHHHHHHccCCcccccccCccchhhhhcccc
Confidence            4577899999999999999866654  89999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhcCCCCCCccccccccCC
Q 031838          127 LKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       127 ~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .+++.+||++|++++...+-..||||
T Consensus       143 ~~va~~LLqhgaDVnA~t~g~ltpLh  168 (228)
T KOG0512|consen  143 FEVAGRLLQHGADVNAQTKGLLTPLH  168 (228)
T ss_pred             hhHHHHHHhccCcccccccccchhhH
Confidence            99999999999999999999999997

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.84  E-value=4.3e-19  Score=104.60  Aligned_cols=124  Identities=40%  Similarity=0.613  Sum_probs=111.1

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..|.++|+.|++.++.+.+++|++.+  .....++..|.+|++.|+..+..+++++++..+..   .+..+..+.||+
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~--~~~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~~~l   77 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENG--ADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGAD---VNARDKDGNTPL   77 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccCCCCCCHH
Confidence            4567899999999999999999999987  34477888999999999999999999999988765   455667889999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI  134 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll  134 (152)
                      |.|+..++.+++++|+..+...+..+..+.+|++.|...+..+++++|+
T Consensus        78 ~~a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~Ll  126 (126)
T cd00204          78 HLAARNGNLDVVKLLLKHGADVNARDKDGRTPLHLAAKNGHLEVVKLLL  126 (126)
T ss_pred             HHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHHHHHhcCCHHHHHHhC
Confidence            9999999999999999999888889999999999999999999998874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=99.82  E-value=2.3e-19  Score=118.72  Aligned_cols=129  Identities=28%  Similarity=0.390  Sum_probs=116.9

Q ss_pred             CcCcCCCCCChHHHHHHHh-----CCHHHHHHHHHhhcccccccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 031838            2 DMDIDQTIKDKDLFKAAET-----GDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~-----~~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~   75 (152)
                      |+|.++.-|-+|++.++..     .+.++|..|...+   +++.+. ..|+|+|++|+.+|+.++++.|+..+++   +|
T Consensus       294 ~VD~qNrAGYtpiMLaALA~lk~~~d~~vV~~LF~mg---nVNaKAsQ~gQTALMLAVSHGr~d~vk~LLacgAd---VN  367 (452)
T KOG0514|consen  294 DVDQQNRAGYTPVMLAALAKLKQPADRTVVERLFKMG---DVNAKASQHGQTALMLAVSHGRVDMVKALLACGAD---VN  367 (452)
T ss_pred             cccccccccccHHHHHHHHhhcchhhHHHHHHHHhcc---CcchhhhhhcchhhhhhhhcCcHHHHHHHHHccCC---Cc
Confidence            6788999999999999876     4889999999887   566544 4599999999999999999999999999   89


Q ss_pred             ccCCCCChhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 031838           76 AVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus        76 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                      .+|-.|.|+|++|++.|+.+++++|+.. +++....|.+|.|+|.+|...|+.+|..+|..+
T Consensus       368 iQDdDGSTALMCA~EHGhkEivklLLA~p~cd~sLtD~DgSTAl~IAleagh~eIa~mlYa~  429 (452)
T KOG0514|consen  368 IQDDDGSTALMCAAEHGHKEIVKLLLAVPSCDISLTDVDGSTALSIALEAGHREIAVMLYAH  429 (452)
T ss_pred             cccCCccHHHhhhhhhChHHHHHHHhccCcccceeecCCCchhhhhHHhcCchHHHHHHHHH
Confidence            9999999999999999999999999976 899999999999999999999999999888654

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=99.80  E-value=2.6e-18  Score=101.24  Aligned_cols=109  Identities=48%  Similarity=0.728  Sum_probs=100.6

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 031838           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (152)
Q Consensus        41 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~  120 (152)
                      ++..|.|||++|+..++.+++++++..+..   .+..+..|.++++.|+..++.+++++|+..+..++..+..+.+|+++
T Consensus         3 ~~~~g~t~l~~a~~~~~~~~i~~li~~~~~---~~~~~~~g~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~l~~   79 (126)
T cd00204           3 RDEDGRTPLHLAASNGHLEVVKLLLENGAD---VNAKDNDGRTPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHL   79 (126)
T ss_pred             cCcCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHH
Confidence            456799999999999999999999988876   36678899999999999999999999999998888888899999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          121 AASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       121 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+..++.+++++|+++|.+.+..+..|.||++
T Consensus        80 a~~~~~~~~~~~L~~~~~~~~~~~~~~~~~l~  111 (126)
T cd00204          80 AARNGNLDVVKLLLKHGADVNARDKDGRTPLH  111 (126)
T ss_pred             HHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            99999999999999999999999999999874

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>KOG0505 consensus Myosin phosphatase, regulatory subunit [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.79  E-value=1.2e-18  Score=119.96  Aligned_cols=136  Identities=35%  Similarity=0.515  Sum_probs=123.4

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      -.+.-|+..|+.+.+..|+..+  ...+..+.+|.|++|-+|.-.+.+|++++++++.+   ++..|..++||+|.|+-.
T Consensus        42 a~~l~A~~~~d~~ev~~ll~~g--a~~~~~n~DglTalhq~~id~~~e~v~~l~e~ga~---Vn~~d~e~wtPlhaaasc  116 (527)
T KOG0505|consen   42 AVFLEACSRGDLEEVRKLLNRG--ASPNLCNVDGLTALHQACIDDNLEMVKFLVENGAN---VNAQDNEGWTPLHAAASC  116 (527)
T ss_pred             HHHHhccccccHHHHHHHhccC--CCccccCCccchhHHHHHhcccHHHHHHHHHhcCC---ccccccccCCcchhhccc
Confidence            3577899999999999999987  45578899999999999999999999999999988   899999999999999999


Q ss_pred             CCHHHHHHHHHcCCCC-----------------------------------------------------------cccCC
Q 031838           92 GNVTIVEMLLSKGADV-----------------------------------------------------------NLKND  112 (152)
Q Consensus        92 ~~~~~~~~l~~~~~~~-----------------------------------------------------------~~~~~  112 (152)
                      ++..++.+++..|+++                                                           +..+.
T Consensus       117 g~~~i~~~li~~gA~~~avNsdg~~P~dl~e~ea~~~~l~~~~~r~gi~iea~R~~~e~~ml~D~~q~l~~G~~~d~~~~  196 (527)
T KOG0505|consen  117 GYLNIVEYLIQHGANLLAVNSDGNMPYDLAEDEATLDVLETEMARQGIDIEAARKAEEQTMLDDARQWLNAGAELDARHA  196 (527)
T ss_pred             ccHHHHHHHHHhhhhhhhccCCCCCccccccCcchhHHHHHHHHHhcccHHHHhhhhHHHHHHHHHHHHhcccccccccc
Confidence            9999999999987762                                                           12333


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       113 ~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|.|.+|+|...|..+++++|++.|.+++.+|..|.||||
T Consensus       197 rG~T~lHvAaa~Gy~e~~~lLl~ag~~~~~~D~dgWtPlH  236 (527)
T KOG0505|consen  197 RGATALHVAAANGYTEVAALLLQAGYSVNIKDYDGWTPLH  236 (527)
T ss_pred             ccchHHHHHHhhhHHHHHHHHHHhccCcccccccCCCccc
Confidence            4789999999999999999999999999999999999998

>PHA02792 ankyrin-like protein; Provisional

Probab=99.79  E-value=4.6e-18  Score=121.72  Aligned_cols=132  Identities=23%  Similarity=0.235  Sum_probs=107.7

Q ss_pred             HHHHHHhC--CHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCC--CChhhHHHH
Q 031838           14 LFKAAETG--DSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE--GWAPIHSAA   89 (152)
Q Consensus        14 l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~--~~t~l~~a~   89 (152)
                      |+.-...+  +++++++|++.|.  .+. + ......++.|+..++.+++++|+++|++   ++.++..  +.||||.|+
T Consensus       310 l~~Yl~~~~v~ieiIK~LId~Ga--~~~-r-~~~~n~~~~Aa~~gn~eIVelLIs~GAD---IN~kD~~g~~~TpLh~A~  382 (631)
T PHA02792        310 LSEYVSYHTVYINVIKCMIDEGA--TLY-R-FKHINKYFQKFDNRDPKVVEYILKNGNV---VVEDDDNIINIMPLFPTL  382 (631)
T ss_pred             HHHHHhcCCccHHHHHHHHHCCC--ccc-c-CCcchHHHHHHHcCCHHHHHHHHHcCCc---hhhhcCCCCChhHHHHHH
Confidence            44444455  7889999999883  222 2 2255678889999999999999999988   5666655  468999877


Q ss_pred             hcCCH---HHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           90 SIGNV---TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        90 ~~~~~---~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .....   +++++++.+|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|+||||
T Consensus       383 ~n~~~~v~~IlklLIs~GADIN~kD~~G~TPLh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~  448 (631)
T PHA02792        383 SIHESDVLSILKLCKPYIDDINKIDKHGRSILYYCIESHSVSLVEWLIDNGADINITTKYGSTCIG  448 (631)
T ss_pred             HhccHhHHHHHHHHHhcCCccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            76554   4578889999999999999999999999999999999999999999999999999985

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.78  E-value=5.4e-19  Score=126.05  Aligned_cols=139  Identities=30%  Similarity=0.395  Sum_probs=112.2

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhc-----------ccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQL-----------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD   78 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~-----------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~   78 (152)
                      ..+.+..|++.|+++.+..+++..-           ...++..|.+|.|.||.||..|+.++.+++++....   +...+
T Consensus         3 k~qel~~a~ka~d~~tva~ll~~~~~r~~~l~~~trsds~n~qd~~gfTalhha~Lng~~~is~llle~ea~---ldl~d   79 (854)
T KOG0507|consen    3 KKQELIDACKAGDYDTVALLLSSKKGRSGLLFFTTRSDSHNLQDYSGFTLLHHAVLNGQNQISKLLLDYEAL---LDLCD   79 (854)
T ss_pred             hhhhHHHhhhcccHHHHHHhccCCCCCCCCCCCCCCCccccccCccchhHHHHHHhcCchHHHHHHhcchhh---hhhhh
Confidence            3567788888888888888876421           123667778888888888888888888888876555   55556


Q ss_pred             CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      ..|.+|+|+|++.|+.++++.++..+..++..+..|.+|||.|+.+++.+++.+|+++|++.-..|+.+.|||
T Consensus        80 ~kg~~plhlaaw~g~~e~vkmll~q~d~~na~~~e~~tplhlaaqhgh~dvv~~Ll~~~adp~i~nns~~t~l  152 (854)
T KOG0507|consen   80 TKGILPLHLAAWNGNLEIVKMLLLQTDILNAVNIENETPLHLAAQHGHLEVVFYLLKKNADPFIRNNSKETVL  152 (854)
T ss_pred             ccCcceEEehhhcCcchHHHHHHhcccCCCcccccCcCccchhhhhcchHHHHHHHhcCCCccccCcccccHH
Confidence            7888888888888888888888888878888888888888888888888888888888888888888888875

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=99.77  E-value=1.7e-18  Score=128.94  Aligned_cols=127  Identities=23%  Similarity=0.224  Sum_probs=105.4

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCC--------------CCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN--------------DDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~--------------~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~   73 (152)
                      ..|.||||.|+..|+.++|+.|++.+  .+++.++              ..|.+|||.|+..++.++++++++.+++   
T Consensus       126 ~~G~TpLhlAa~~~~~eiVklLL~~G--Adv~~~~~~~~~~~~~~~~~~~~g~tpL~~Aa~~~~~~iv~lLl~~gad---  200 (743)
T TIGR00870       126 TPGITALHLAAHRQNYEIVKLLLERG--ASVPARACGDFFVKSQGVDSFYHGESPLNAAACLGSPSIVALLSEDPAD---  200 (743)
T ss_pred             CCCCcHHHHHHHhCCHHHHHHHHhCC--CCCCcCcCCchhhcCCCCCcccccccHHHHHHHhCCHHHHHHHhcCCcc---
Confidence            46899999999999999999999987  4444332              3588999999999999999999988876   


Q ss_pred             ccccCCCCChhhHHHHhcC---------CHHHHHHHHHcCCCC-------cccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           74 VNAVDEEGWAPIHSAASIG---------NVTIVEMLLSKGADV-------NLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~---------~~~~~~~l~~~~~~~-------~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      ++.+|..|+||+|.|+..+         ...+.+++++.+...       +..|..|.||+++|+..|+.++++.|++.+
T Consensus       201 in~~d~~g~T~Lh~A~~~~~~~~~~~~l~~~~~~~l~~ll~~~~~~~el~~i~N~~g~TPL~~A~~~g~~~l~~lLL~~~  280 (743)
T TIGR00870       201 ILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDSKELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIK  280 (743)
T ss_pred             hhhHhhhhhHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhccCChHhhhhhcCCCCCCchhhhhhcCCccHHHHHHHHH
Confidence            6788999999999999876         234566666654443       567889999999999999999999999865


Q ss_pred             CC
Q 031838          138 AK  139 (152)
Q Consensus       138 ~~  139 (152)
                      .+
T Consensus       281 ~~  282 (743)
T TIGR00870       281 YK  282 (743)
T ss_pred             Hh
Confidence            43

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.76  E-value=3.7e-18  Score=92.31  Aligned_cols=105  Identities=25%  Similarity=0.352  Sum_probs=83.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHH
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (152)
                      ++..+.++++.|.++.|+..+..+  .+++. ...|++|||+|+..|..+++++++..|++   ++..|++|.|||..|+
T Consensus         2 ~d~~~~W~vkNG~~DeVk~~v~~g--~nVn~-~~ggR~plhyAAD~GQl~ilefli~iGA~---i~~kDKygITPLLsAv   75 (117)
T KOG4214|consen    2 GDMSVAWNVKNGEIDEVKQSVNEG--LNVNE-IYGGRTPLHYAADYGQLSILEFLISIGAN---IQDKDKYGITPLLSAV   75 (117)
T ss_pred             cchhHhhhhccCcHHHHHHHHHcc--ccHHH-HhCCcccchHhhhcchHHHHHHHHHhccc---cCCccccCCcHHHHHH
Confidence            456778888999999998888876  34443 23688999999999999999999888887   6777888999998899


Q ss_pred             hcCCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 031838           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (152)
Q Consensus        90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~  120 (152)
                      +.|+.+|+++|+..|++-....-+|.+.+..
T Consensus        76 wEGH~~cVklLL~~GAdrt~~~PdG~~~~ea  106 (117)
T KOG4214|consen   76 WEGHRDCVKLLLQNGADRTIHAPDGTALIEA  106 (117)
T ss_pred             HHhhHHHHHHHHHcCcccceeCCCchhHHhh
Confidence            9999999999998888876666666555443

>KOG0507 consensus CASK-interacting adaptor protein (caskin) and related proteins with ankyrin repeats and SAM domain [Signal transduction mechanisms]

Probab=99.76  E-value=4.5e-18  Score=121.47  Aligned_cols=146  Identities=27%  Similarity=0.332  Sum_probs=112.7

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc-----ccccC
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-----VNAVD   78 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----~~~~~   78 (152)
                      +..+-.+.++||.|+..|..+.+++|+..+  .+..+++..+.|+|-.|++.|..++++.++...-....     ...++
T Consensus       109 na~~~e~~tplhlaaqhgh~dvv~~Ll~~~--adp~i~nns~~t~ldlA~qfgr~~Vvq~ll~~~~~~~~~~~~~~~~~~  186 (854)
T KOG0507|consen  109 NAVNIENETPLHLAAQHGHLEVVFYLLKKN--ADPFIRNNSKETVLDLASRFGRAEVVQMLLQKKFPVQSSLRVGDIKRP  186 (854)
T ss_pred             CcccccCcCccchhhhhcchHHHHHHHhcC--CCccccCcccccHHHHHHHhhhhHHHHHHhhhccchhhcccCCCCCCC
Confidence            455566777777777777777777777766  55667777777777777777777777777654211110     12234


Q ss_pred             CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..+.+++|.|+++|+.++++.|++.|.+++.....| |.||.|+.+|..+++.+|++-|.+...+|.+|+|.|+
T Consensus       187 ~~~~~plHlaakngh~~~~~~ll~ag~din~~t~~g-talheaalcgk~evvr~ll~~gin~h~~n~~~qtald  259 (854)
T KOG0507|consen  187 FPAIYPLHLAAKNGHVECMQALLEAGFDINYTTEDG-TALHEAALCGKAEVVRFLLEIGINTHIKNQHGQTALD  259 (854)
T ss_pred             CCCcCCcchhhhcchHHHHHHHHhcCCCcccccccc-hhhhhHhhcCcchhhhHHHhhccccccccccchHHHH
Confidence            566789999999999999999999999999888776 8999999999999999999999999999999998763

>PHA02792 ankyrin-like protein; Provisional

Probab=99.76  E-value=3.6e-17  Score=117.17  Aligned_cols=127  Identities=19%  Similarity=0.316  Sum_probs=107.9

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCC--chHHHHHHHcCCH---HHHHHHHhcCCCCccccccCCCCChh
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD--RTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAP   84 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g--~t~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~~~~t~   84 (152)
                      ....++.|+..|+.+.+++|++.|  .+++.++..|  .||||+|+.....   ++++++++++++   ++.+|..|.||
T Consensus       339 ~~n~~~~Aa~~gn~eIVelLIs~G--ADIN~kD~~g~~~TpLh~A~~n~~~~v~~IlklLIs~GAD---IN~kD~~G~TP  413 (631)
T PHA02792        339 HINKYFQKFDNRDPKVVEYILKNG--NVVVEDDDNIINIMPLFPTLSIHESDVLSILKLCKPYIDD---INKIDKHGRSI  413 (631)
T ss_pred             cchHHHHHHHcCCHHHHHHHHHcC--CchhhhcCCCCChhHHHHHHHhccHhHHHHHHHHHhcCCc---cccccccCcch
Confidence            456789999999999999999998  5677777664  6999998776654   357888888888   78889999999


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH--cC--------CHHHHHHHHhcCCCCC
Q 031838           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS--KG--------WLKIVELLISRGAKIN  141 (152)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~--~~--------~~~~~~~Ll~~g~~~~  141 (152)
                      ||.|+..++.+++++|+++|++++.++..|.||+++|..  .+        ..++++.|+++|.++.
T Consensus       414 Lh~Aa~~~n~eivelLLs~GADIN~kD~~G~TpL~~A~~~~~~~~~~i~~~~~~il~lLLs~~p~i~  480 (631)
T PHA02792        414 LYYCIESHSVSLVEWLIDNGADINITTKYGSTCIGICVILAHACIPEIAELYIKILEIILSKLPTIE  480 (631)
T ss_pred             HHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCChh
Confidence            999999999999999999999999999999999999976  22        2467889999997764

>KOG4214 consensus Myotrophin and similar proteins [Transcription]

Probab=99.75  E-value=8.9e-18  Score=90.84  Aligned_cols=100  Identities=28%  Similarity=0.346  Sum_probs=88.5

Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 031838           48 LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (152)
Q Consensus        48 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~  127 (152)
                      -+.|++.+|.++-++-.+..+.+   ++.. ..|++|||+|+-+|+..++++|+.-|++++.+|.+|-|||..|++.|+.
T Consensus         5 ~~~W~vkNG~~DeVk~~v~~g~n---Vn~~-~ggR~plhyAAD~GQl~ilefli~iGA~i~~kDKygITPLLsAvwEGH~   80 (117)
T KOG4214|consen    5 SVAWNVKNGEIDEVKQSVNEGLN---VNEI-YGGRTPLHYAADYGQLSILEFLISIGANIQDKDKYGITPLLSAVWEGHR   80 (117)
T ss_pred             hHhhhhccCcHHHHHHHHHcccc---HHHH-hCCcccchHhhhcchHHHHHHHHHhccccCCccccCCcHHHHHHHHhhH
Confidence            46788999999999888776655   3332 3789999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCCCCccccccccC
Q 031838          128 KIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus       128 ~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      +++++|+++|++...+...|.+.+
T Consensus        81 ~cVklLL~~GAdrt~~~PdG~~~~  104 (117)
T KOG4214|consen   81 DCVKLLLQNGADRTIHAPDGTALI  104 (117)
T ss_pred             HHHHHHHHcCcccceeCCCchhHH
Confidence            999999999999998888887643

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.75  E-value=1.5e-17  Score=119.62  Aligned_cols=125  Identities=23%  Similarity=0.258  Sum_probs=112.7

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccC-----------------------CCCCchHHHHHHHcCCHHHHHH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR-----------------------NDDDRTLLHVAASCGHPEVVEI   63 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~-----------------------~~~g~t~l~~a~~~~~~~~~~~   63 (152)
                      ...|+|+||+|+...+.+.|..|++.+.  +++.|                       -..|..||.+|+..+..+++++
T Consensus       181 eY~GqSaLHiAIv~~~~~~V~lLl~~gA--DV~aRa~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrl  258 (782)
T KOG3676|consen  181 EYYGQSALHIAIVNRDAELVRLLLAAGA--DVHARACGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRL  258 (782)
T ss_pred             hhcCcchHHHHHHhccHHHHHHHHHcCC--chhhHhhccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHH
Confidence            3469999999999999999999999873  33321                       2247899999999999999999


Q ss_pred             HHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCC--CcccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 031838           64 LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD--VNLKNDGGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus        64 ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~--~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                      |++++++   ++.+|..|+|.||..+..-..++..+++..|++  ...+|..|-|||..|+..|..++.+.+++.
T Consensus       259 Ll~~gAd---~~aqDS~GNTVLH~lVi~~~~~My~~~L~~ga~~l~~v~N~qgLTPLtLAaklGk~emf~~ile~  330 (782)
T KOG3676|consen  259 LLAHGAD---PNAQDSNGNTVLHMLVIHFVTEMYDLALELGANALEHVRNNQGLTPLTLAAKLGKKEMFQHILER  330 (782)
T ss_pred             HHhcCCC---CCccccCCChHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCChHHHHHHhhhHHHHHHHHHh
Confidence            9999998   889999999999999999999999999999999  889999999999999999999999999987

>KOG3676 consensus Ca2+-permeable cation channel OSM-9 and related channels (OTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=99.74  E-value=5.3e-17  Score=116.81  Aligned_cols=150  Identities=21%  Similarity=0.219  Sum_probs=124.0

Q ss_pred             CcCcCCCCCChHHHHHHHh---CCHHHHHHHHHhhcccc---cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc--
Q 031838            2 DMDIDQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--   73 (152)
                      |++.+...|.|.||.|...   +..+.+..|++..+...   .......|.|+||.|+.+.+.++|.+|++.|++++.  
T Consensus       135 ~~~~RGa~GET~Lh~~lL~~~~~~n~la~~LL~~~p~lind~~~~eeY~GqSaLHiAIv~~~~~~V~lLl~~gADV~aRa  214 (782)
T KOG3676|consen  135 KLNERGATGETLLHKALLNLSDGHNELARVLLEIFPKLINDIYTSEEYYGQSALHIAIVNRDAELVRLLLAAGADVHARA  214 (782)
T ss_pred             ccccccchhhhHHHHHHhcCchhHHHHHHHHHHHhHHHhhhhhhhHhhcCcchHHHHHHhccHHHHHHHHHcCCchhhHh
Confidence            3455567899999999984   34588888887643111   112345599999999999999999999999987544  


Q ss_pred             ----ccccC--------------CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 031838           74 ----VNAVD--------------EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (152)
Q Consensus        74 ----~~~~~--------------~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~  135 (152)
                          ....|              ..|..||..|+=.++.+++++|+++|++++.+|..|.|.||..+.+...++...+++
T Consensus       215 ~G~FF~~~dqk~~rk~T~Y~G~~YfGEyPLSfAAC~nq~eivrlLl~~gAd~~aqDS~GNTVLH~lVi~~~~~My~~~L~  294 (782)
T KOG3676|consen  215 CGAFFCPDDQKASRKSTNYTGYFYFGEYPLSFAACTNQPEIVRLLLAHGADPNAQDSNGNTVLHMLVIHFVTEMYDLALE  294 (782)
T ss_pred             hccccCcccccccccccCCcceeeeccCchHHHHHcCCHHHHHHHHhcCCCCCccccCCChHHHHHHHHHHHHHHHHHHh
Confidence                11111              246789999999999999999999999999999999999999999999999999999


Q ss_pred             cCCC--CCCccccccccC
Q 031838          136 RGAK--INSKDKACNFLY  151 (152)
Q Consensus       136 ~g~~--~~~~~~~~~t~l  151 (152)
                      +|++  ....|..|.|||
T Consensus       295 ~ga~~l~~v~N~qgLTPL  312 (782)
T KOG3676|consen  295 LGANALEHVRNNQGLTPL  312 (782)
T ss_pred             cCCCccccccccCCCChH
Confidence            9999  999999999998

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.73  E-value=2.2e-16  Score=101.92  Aligned_cols=129  Identities=38%  Similarity=0.501  Sum_probs=115.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCC-----HHHHHHHHhcCCCCccccccCCCC
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH-----PEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~-----~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      +..+.++++.++..++.+.+++++..+  .+++.++..|.||+|+|+..++     .++++.+++.+......+.++..|
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~~~~~g  147 (235)
T COG0666          70 DLDGRLPLHSAASKGDDKIVKLLLASG--ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDG  147 (235)
T ss_pred             CccccCHHHHHHHcCcHHHHHHHHHcC--CCcccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccccCCCC
Confidence            344788999999999999999999887  5668999999999999999999     999999999888211266778999


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      .||+|+|+..|+.++++.+++.|++++..+..|.|+++.|+..+..++++.+++.+
T Consensus       148 ~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~l~~~~  203 (235)
T COG0666         148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKG  203 (235)
T ss_pred             CchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchhhhcccchHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999865

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.70  E-value=4e-16  Score=114.64  Aligned_cols=102  Identities=30%  Similarity=0.412  Sum_probs=94.6

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 031838           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (152)
Q Consensus        47 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~  126 (152)
                      ..|+.|+..|+.+.++.|+..+.+   ++.+|..|.||||+|+..|+.+++++|++.|++++..|..|.||||+|+..++
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~Gad---in~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gadvn~~d~~G~TpLh~A~~~g~  160 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGGAD---PNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPTLLDKDGKTPLELAEENGF  160 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCc
Confidence            358889999999999999998887   67788899999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhc-------CCCCCCccccccccC
Q 031838          127 LKIVELLISR-------GAKINSKDKACNFLY  151 (152)
Q Consensus       127 ~~~~~~Ll~~-------g~~~~~~~~~~~t~l  151 (152)
                      .+++++|+++       |++.+..+..|.+|+
T Consensus       161 ~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~  192 (664)
T PTZ00322        161 REVVQLLSRHSQCHFELGANAKPDSFTGKPPS  192 (664)
T ss_pred             HHHHHHHHhCCCcccccCCCCCccccCCCCcc
Confidence            9999999999       899988888888775

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=99.65  E-value=9.2e-15  Score=94.33  Aligned_cols=112  Identities=41%  Similarity=0.567  Sum_probs=102.0

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCC-----HHHHHHHHHcCC---CCcc
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN-----VTIVEMLLSKGA---DVNL  109 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~-----~~~~~~l~~~~~---~~~~  109 (152)
                      ....+..+.++++.++..+...++.+++..+.+   .+.++..|.|++|.|+..++     .+++++|++.|+   ..+.
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~~~~~~ll~~g~~~~~~~~  142 (235)
T COG0666          66 LAARDLDGRLPLHSAASKGDDKIVKLLLASGAD---VNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNL  142 (235)
T ss_pred             cccCCccccCHHHHHHHcCcHHHHHHHHHcCCC---cccccCCCCcHHHHHHhcCCcccchHHHHHHHHHcCCCCCCccc
Confidence            344555688999999999999999999988877   67888999999999999999     999999999999   6666


Q ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       110 ~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .+..|.||+|+|+..|+.++++.|++.|++++..+..|.|+++
T Consensus       143 ~~~~g~tpl~~A~~~~~~~~~~~ll~~~~~~~~~~~~g~t~l~  185 (235)
T COG0666         143 RDEDGNTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALD  185 (235)
T ss_pred             cCCCCCchhHHHHHcCchHHHHHHHhcCCCCcccccCCCcchh
Confidence            7999999999999999999999999999999999999999985

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=99.64  E-value=3.8e-15  Score=109.59  Aligned_cols=106  Identities=26%  Similarity=0.377  Sum_probs=93.9

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      ..|+.|+..|+.+.++.|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   .+.+|..|.||||+|+..
T Consensus        84 ~~L~~aa~~G~~~~vk~LL~~G--adin~~d~~G~TpLh~Aa~~g~~eiv~~LL~~Gad---vn~~d~~G~TpLh~A~~~  158 (664)
T PTZ00322         84 VELCQLAASGDAVGARILLTGG--ADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGAD---PTLLDKDGKTPLELAEEN  158 (664)
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHC
Confidence            3588999999999999999987  67888999999999999999999999999999888   677889999999999999


Q ss_pred             CCHHHHHHHHHc-------CCCCcccCCCCCcHHHHHH
Q 031838           92 GNVTIVEMLLSK-------GADVNLKNDGGRTALHYAA  122 (152)
Q Consensus        92 ~~~~~~~~l~~~-------~~~~~~~~~~~~~pl~~a~  122 (152)
                      ++.+++++|+++       +++.+..+..|.+|+..+.
T Consensus       159 g~~~iv~~Ll~~~~~~~~~ga~~~~~~~~g~~~~~~~~  196 (664)
T PTZ00322        159 GFREVVQLLSRHSQCHFELGANAKPDSFTGKPPSLEDS  196 (664)
T ss_pred             CcHHHHHHHHhCCCcccccCCCCCccccCCCCccchhh
Confidence            999999999988       7777777777766655444

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.64  E-value=2.5e-15  Score=104.18  Aligned_cols=118  Identities=31%  Similarity=0.436  Sum_probs=100.6

Q ss_pred             HHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcC
Q 031838           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (152)
Q Consensus        13 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (152)
                      .|.-|+..|.++.|+.++..-  .+...-+.+|.|+||-|+..||+++|++|+..|.+   +|..|..||||||+|+..+
T Consensus       553 LLLDaaLeGEldlVq~~i~ev--~DpSqpNdEGITaLHNAiCaghyeIVkFLi~~gan---VNa~DSdGWTPLHCAASCN  627 (752)
T KOG0515|consen  553 LLLDAALEGELDLVQRIIYEV--TDPSQPNDEGITALHNAICAGHYEIVKFLIEFGAN---VNAADSDGWTPLHCAASCN  627 (752)
T ss_pred             HHHhhhhcchHHHHHHHHHhh--cCCCCCCccchhHHhhhhhcchhHHHHHHHhcCCc---ccCccCCCCchhhhhhhcC
Confidence            466788999999999998864  45667788899999999999999999999999998   7888999999999999999


Q ss_pred             CHHHHHHHHHcCCCCc-ccCCCCCcHHHHHHH--cCCHHHHHHHHh
Q 031838           93 NVTIVEMLLSKGADVN-LKNDGGRTALHYAAS--KGWLKIVELLIS  135 (152)
Q Consensus        93 ~~~~~~~l~~~~~~~~-~~~~~~~~pl~~a~~--~~~~~~~~~Ll~  135 (152)
                      +..+++.|++.|+.+- ..-.++.|++..+..  .|..+|.++|..
T Consensus       628 nv~~ckqLVe~GaavfAsTlSDmeTa~eKCee~eeGY~~CsqyL~~  673 (752)
T KOG0515|consen  628 NVPMCKQLVESGAAVFASTLSDMETAAEKCEEMEEGYDQCSQYLYG  673 (752)
T ss_pred             chHHHHHHHhccceEEeeecccccchhhhcchhhhhHHHHHHHHHH
Confidence            9999999999976653 344467788887765  567889999864

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.62  E-value=2.4e-15  Score=75.95  Aligned_cols=54  Identities=50%  Similarity=0.870  Sum_probs=31.4

Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHH
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI  134 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll  134 (152)
                      |.|++|.|+..|+.+++++|++.|.+++.+|..|.||+|+|+..|+.+++++|+
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~din~~d~~g~t~lh~A~~~g~~~~~~~Ll   54 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGADINAQDEDGRTPLHYAAKNGNIDIVKFLL   54 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSGTT-B-TTS--HHHHHHHTT-HHHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHccCHHHHHHHC
Confidence            456666666666666666666666666666666666666666666666666654

...

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.62  E-value=1.6e-14  Score=93.59  Aligned_cols=121  Identities=27%  Similarity=0.365  Sum_probs=109.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      ....+|..++-.|+.+.+..|++.-  -.++.+|..|.++|..|+..|+.++++++++.|++++  ..++..+.||||.|
T Consensus        11 ~~~~~Lle~i~Kndt~~a~~LLs~v--r~vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN--~~qhg~~YTpLmFA   86 (396)
T KOG1710|consen   11 APKSPLLEAIDKNDTEAALALLSTV--RQVNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVN--DKQHGTLYTPLMFA   86 (396)
T ss_pred             chhhHHHHHHccCcHHHHHHHHHHh--hhhhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcC--cccccccccHHHHH
Confidence            3468999999999999999999864  4688999999999999999999999999999999853  23567789999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~L  133 (152)
                      +.+|+.++.++|++.|+.....+.-|.|+-..|+..|+.+++..+
T Consensus        87 ALSGn~dvcrllldaGa~~~~vNsvgrTAaqmAAFVG~H~CV~iI  131 (396)
T KOG1710|consen   87 ALSGNQDVCRLLLDAGARMYLVNSVGRTAAQMAAFVGHHECVAII  131 (396)
T ss_pred             HHcCCchHHHHHHhccCccccccchhhhHHHHHHHhcchHHHHHH
Confidence            999999999999999999999999999999999999999887755

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.61  E-value=3.6e-16  Score=79.40  Aligned_cols=48  Identities=50%  Similarity=0.756  Sum_probs=17.1

Q ss_pred             ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 031838           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a  121 (152)
                      .+.+|..|.||||+|+..|+.+++++|++.|++++.+|..|+||+++|
T Consensus         9 ~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen    9 VNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHHH-
T ss_pred             CcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHHhC
Confidence            344444555555555555555555555544555555555555555443

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=99.58  E-value=1.1e-14  Score=73.50  Aligned_cols=53  Identities=47%  Similarity=0.706  Sum_probs=23.5

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHH
Q 031838           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML  100 (152)
Q Consensus        45 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l  100 (152)
                      |.||||+|++.|+.++++++++.+.+   ++.+|..|.||+|+|+..|+.+++++|
T Consensus         1 g~t~lh~A~~~g~~~~~~~Ll~~~~d---in~~d~~g~t~lh~A~~~g~~~~~~~L   53 (54)
T PF13637_consen    1 GRTPLHWAARSGNLEIVKLLLEHGAD---INAQDEDGRTPLHYAAKNGNIDIVKFL   53 (54)
T ss_dssp             SSBHHHHHHHTT-HHHHHHHHHTTSG---TT-B-TTS--HHHHHHHTT-HHHHHHH
T ss_pred             CChHHHHHHHhCCHHHHHHHHHCCCC---CCCCCCCCCCHHHHHHHccCHHHHHHH
Confidence            34555555555555555555544443   334444555555555555555555544

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=99.55  E-value=7.3e-15  Score=74.58  Aligned_cols=53  Identities=43%  Similarity=0.605  Sum_probs=25.1

Q ss_pred             HHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          100 LLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       100 l~~~~-~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |++.| .+++.+|..|.||||+|+..|+.+++++|++.|++++.+|+.|+||||
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~g~~~~v~~Ll~~g~d~~~~d~~G~Tpl~   54 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARYGHSEVVRLLLQNGADPNAKDKDGQTPLH   54 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHHT-HHHHHHHHHCT--TT---TTS--HHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHcCcHHHHHHHHHCcCCCCCCcCCCCCHHH
Confidence            34455 667777777777777777777777777777777777777777777764

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=99.55  E-value=2.6e-14  Score=99.26  Aligned_cols=99  Identities=27%  Similarity=0.362  Sum_probs=84.0

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHH
Q 031838           49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK  128 (152)
Q Consensus        49 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~  128 (152)
                      |.-|+.-|-+++|+.++..-.+   ....+-.|.|+||.|+-.||.+|++||+++|+++|..|.+||||||.|+.+++..
T Consensus       554 LLDaaLeGEldlVq~~i~ev~D---pSqpNdEGITaLHNAiCaghyeIVkFLi~~ganVNa~DSdGWTPLHCAASCNnv~  630 (752)
T KOG0515|consen  554 LLDAALEGELDLVQRIIYEVTD---PSQPNDEGITALHNAICAGHYEIVKFLIEFGANVNAADSDGWTPLHCAASCNNVP  630 (752)
T ss_pred             HHhhhhcchHHHHHHHHHhhcC---CCCCCccchhHHhhhhhcchhHHHHHHHhcCCcccCccCCCCchhhhhhhcCchH
Confidence            4457777899999988865555   4455668999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCCCCCCcc-cccccc
Q 031838          129 IVELLISRGAKINSKD-KACNFL  150 (152)
Q Consensus       129 ~~~~Ll~~g~~~~~~~-~~~~t~  150 (152)
                      +++.|++.|+-+.... ..+.|+
T Consensus       631 ~ckqLVe~GaavfAsTlSDmeTa  653 (752)
T KOG0515|consen  631 MCKQLVESGAAVFASTLSDMETA  653 (752)
T ss_pred             HHHHHHhccceEEeeecccccch
Confidence            9999999997775433 444454

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.51  E-value=2.8e-14  Score=106.56  Aligned_cols=139  Identities=28%  Similarity=0.318  Sum_probs=120.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      .-+++|-.||..|.-|.+..|+.++  .++..+|+.|.+||.+|+..||..+++.|+...++.  -...|..+.|+|.+|
T Consensus       756 n~~t~LT~acaggh~e~vellv~rg--aniehrdkkgf~plImaatagh~tvV~~llk~ha~v--eaQsdrtkdt~lSla  831 (2131)
T KOG4369|consen  756 NIKTNLTSACAGGHREEVELLVVRG--ANIEHRDKKGFVPLIMAATAGHITVVQDLLKAHADV--EAQSDRTKDTMLSLA  831 (2131)
T ss_pred             cccccccccccCccHHHHHHHHHhc--ccccccccccchhhhhhcccCchHHHHHHHhhhhhh--hhhcccccCceEEEe
Confidence            3578999999999999999999987  688899999999999999999999999999876663  334577889999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcc--ccccccC
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD--KACNFLY  151 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~--~~~~t~l  151 (152)
                      |..|+.+++++|+..|++...++-..+||+..|...|..+++..|+..|++++.+.  +-|-.||
T Consensus       832 csggr~~vvelLl~~gankehrnvsDytPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPL  896 (2131)
T KOG4369|consen  832 CSGGRTRVVELLLNAGANKEHRNVSDYTPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPL  896 (2131)
T ss_pred             cCCCcchHHHHHHHhhccccccchhhcCchhhhcCcchHHHHHHHhhcccccccccccccCcchh
Confidence            99999999999999999998888889999999999999999999999998876654  4454544

>KOG1710 consensus MYND Zn-finger and ankyrin repeat protein [General function prediction only]

Probab=99.39  E-value=3.8e-12  Score=82.77  Aligned_cols=103  Identities=33%  Similarity=0.357  Sum_probs=91.7

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHH
Q 031838           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAAS  123 (152)
Q Consensus        45 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~~pl~~a~~  123 (152)
                      ...||..+...+..+-..-|++--..   .+.+|..|.++|..|+..|+.+.++++++.|+++|.. +-.++|||+.|+-
T Consensus        12 ~~~~Lle~i~Kndt~~a~~LLs~vr~---vn~~D~sGMs~LahAaykGnl~~v~lll~~gaDvN~~qhg~~YTpLmFAAL   88 (396)
T KOG1710|consen   12 PKSPLLEAIDKNDTEAALALLSTVRQ---VNQRDPSGMSVLAHAAYKGNLTLVELLLELGADVNDKQHGTLYTPLMFAAL   88 (396)
T ss_pred             hhhHHHHHHccCcHHHHHHHHHHhhh---hhccCCCcccHHHHHHhcCcHHHHHHHHHhCCCcCcccccccccHHHHHHH
Confidence            46789999999998888878765333   7888999999999999999999999999999999875 3457899999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCcccccccc
Q 031838          124 KGWLKIVELLISRGAKINSKDKACNFL  150 (152)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~  150 (152)
                      .|+.++...|++.|+.....|.-|+|+
T Consensus        89 SGn~dvcrllldaGa~~~~vNsvgrTA  115 (396)
T KOG1710|consen   89 SGNQDVCRLLLDAGARMYLVNSVGRTA  115 (396)
T ss_pred             cCCchHHHHHHhccCccccccchhhhH
Confidence            999999999999999999999999986

>KOG4369 consensus RTK signaling protein MASK/UNC-44 [Signal transduction mechanisms]

Probab=99.34  E-value=2.8e-12  Score=96.27  Aligned_cols=136  Identities=25%  Similarity=0.340  Sum_probs=96.6

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      +..++..|.++|..|+-.|++..|+.|++... ......|..+.|+|.+||-.|+.+++++|+..+++   ...++....
T Consensus       783 iehrdkkgf~plImaatagh~tvV~~llk~ha-~veaQsdrtkdt~lSlacsggr~~vvelLl~~gan---kehrnvsDy  858 (2131)
T KOG4369|consen  783 IEHRDKKGFVPLIMAATAGHITVVQDLLKAHA-DVEAQSDRTKDTMLSLACSGGRTRVVELLLNAGAN---KEHRNVSDY  858 (2131)
T ss_pred             ccccccccchhhhhhcccCchHHHHHHHhhhh-hhhhhcccccCceEEEecCCCcchHHHHHHHhhcc---ccccchhhc
Confidence            45567778888888888888888888888762 12224566678888888888888888888887766   445556667


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCccc--CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLK--NDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~--~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~  142 (152)
                      |||.+|...|..++++.|+..|..++.+  ..-|..||+.|...|+....+.|++.|.+++.
T Consensus       859 tPlsla~Sggy~~iI~~llS~GseInSrtgSklgisPLmlatmngh~~at~~ll~~gsdiNa  920 (2131)
T KOG4369|consen  859 TPLSLARSGGYTKIIHALLSSGSEINSRTGSKLGISPLMLATMNGHQAATLSLLQPGSDINA  920 (2131)
T ss_pred             CchhhhcCcchHHHHHHHhhcccccccccccccCcchhhhhhhccccHHHHHHhcccchhcc
Confidence            8888888888888888888777555543  33455666666666666666666666655544

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.22  E-value=4.2e-12  Score=92.69  Aligned_cols=99  Identities=26%  Similarity=0.396  Sum_probs=80.4

Q ss_pred             HHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC-CCCChhhHHHHhcCCHHHHHHHHHc
Q 031838           25 TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEMLLSK  103 (152)
Q Consensus        25 ~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~t~l~~a~~~~~~~~~~~l~~~  103 (152)
                      .++-.+.+......+..|..|+++||.++.-+...++++|+.+|.+   +..+| ..|+||||.|+.+|+++|+..|+.+
T Consensus        32 qlk~F~~k~c~n~anikD~~GR~alH~~~S~~k~~~l~wLlqhGid---v~vqD~ESG~taLHRaiyyG~idca~lLL~~  108 (1267)
T KOG0783|consen   32 QLKGFSEKSCQNLANIKDRYGRTALHIAVSENKNSFLRWLLQHGID---VFVQDEESGYTALHRAIYYGNIDCASLLLSK  108 (1267)
T ss_pred             HHHHHHHHhhhhhhhHHHhhccceeeeeeccchhHHHHHHHhcCce---eeeccccccchHhhHhhhhchHHHHHHHHhc
Confidence            3444455443455778889999999999999999999999988877   55555 4789999999999999999999999


Q ss_pred             CCCCcccCCCCCcHHHHHHHcCC
Q 031838          104 GADVNLKNDGGRTALHYAASKGW  126 (152)
Q Consensus       104 ~~~~~~~~~~~~~pl~~a~~~~~  126 (152)
                      |..+.++|..|..||...++...
T Consensus       109 g~SL~i~Dkeglsplq~~~r~~~  131 (1267)
T KOG0783|consen  109 GRSLRIKDKEGLSPLQFLSRVLS  131 (1267)
T ss_pred             CCceEEecccCCCHHHHHhhccc
Confidence            99999999999999988877433

>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]

Probab=99.20  E-value=2.6e-11  Score=88.70  Aligned_cols=79  Identities=33%  Similarity=0.412  Sum_probs=74.5

Q ss_pred             ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .+..|..|++++|+++..+...+++||+++|+++..+|. .|+||||-|...|+.+++-.||++|..+..+|+.|..|||
T Consensus        45 anikD~~GR~alH~~~S~~k~~~l~wLlqhGidv~vqD~ESG~taLHRaiyyG~idca~lLL~~g~SL~i~Dkeglsplq  124 (1267)
T KOG0783|consen   45 ANIKDRYGRTALHIAVSENKNSFLRWLLQHGIDVFVQDEESGYTALHRAIYYGNIDCASLLLSKGRSLRIKDKEGLSPLQ  124 (1267)
T ss_pred             hhHHHhhccceeeeeeccchhHHHHHHHhcCceeeeccccccchHhhHhhhhchHHHHHHHHhcCCceEEecccCCCHHH
Confidence            677789999999999999999999999999999999887 6899999999999999999999999999999999999985

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=99.19  E-value=2.1e-10  Score=81.10  Aligned_cols=124  Identities=26%  Similarity=0.385  Sum_probs=108.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      ...|..|+..+++-.++..-.++  -.+..++.+..+.||+|+.-|+-+++++++.++... ++...+..|.|+||.|+-
T Consensus       867 seeil~av~~~D~~klqE~h~~g--g~ll~~~~~~~sllh~a~~tg~~eivkyildh~p~e-lld~~de~get~lhkaa~  943 (1004)
T KOG0782|consen  867 SEEILRAVLSSDLMKLQETHLNG--GSLLIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSE-LLDMADETGETALHKAAC  943 (1004)
T ss_pred             cHHHHHHHHhccHHHHHHHHhcC--CceEeeCcchhhHHHHHHhcCChHHHHHHHhcCCHH-HHHHHhhhhhHHHHHHHH
Confidence            34578889999988888877765  466677888899999999999999999999987643 355667899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      .++..+.++|++.|+.+...|..|.||-.-|...+..+++.+|-.++
T Consensus       944 ~~~r~vc~~lvdagasl~ktd~kg~tp~eraqqa~d~dlaayle~rq  990 (1004)
T KOG0782|consen  944 QRNRAVCQLLVDAGASLRKTDSKGKTPQERAQQAGDPDLAAYLESRQ  990 (1004)
T ss_pred             hcchHHHHHHHhcchhheecccCCCChHHHHHhcCCchHHHHHhhhh
Confidence            99999999999999999999999999999999999999999987654

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.18  E-value=5.5e-11  Score=82.05  Aligned_cols=94  Identities=24%  Similarity=0.266  Sum_probs=83.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHHH
Q 031838           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHY  120 (152)
Q Consensus        42 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~~  120 (152)
                      ..++...+.+|+..|+...++.+.-.+.+   ++..|...+|+||.|+..|+.+++++|++. +.+++.+|.||.|||.-
T Consensus       503 ~~~~~i~~~~aa~~GD~~alrRf~l~g~D---~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  503 ENDTVINVMYAAKNGDLSALRRFALQGMD---LETKDYDDRTALHVAAAEGHVEVVKFLLNACKVDPDPKDRWGRTPLDD  579 (622)
T ss_pred             cccchhhhhhhhhcCCHHHHHHHHHhccc---ccccccccchhheeecccCceeHHHHHHHHHcCCCChhhccCCCcchH
Confidence            34456789999999999999888877777   788899999999999999999999999977 89999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCC
Q 031838          121 AASKGWLKIVELLISRGA  138 (152)
Q Consensus       121 a~~~~~~~~~~~Ll~~g~  138 (152)
                      |...++.+++++|-+..-
T Consensus       580 A~~F~h~~v~k~L~~~~~  597 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEAQY  597 (622)
T ss_pred             hHhcCcHHHHHHHHHHhc
Confidence            999999999999977654

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=99.16  E-value=3.4e-10  Score=78.61  Aligned_cols=96  Identities=32%  Similarity=0.469  Sum_probs=82.3

Q ss_pred             ccCCCCCc------hHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCC
Q 031838           39 SLRNDDDR------TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND  112 (152)
Q Consensus        39 ~~~~~~g~------t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  112 (152)
                      ..+|.+|-      .-||.+++.++.++.-.|+..|++.++..  ...|.||||+|++.|+.--+++|+-+|+++...|.
T Consensus       121 ~~rDdD~~~~~~LsrQLhasvRt~nlet~LRll~lGA~~N~~h--pekg~TpLHvAAk~Gq~~Q~ElL~vYGAD~~a~d~  198 (669)
T KOG0818|consen  121 PCRDDDSVTAKDLSKQLHSSVRTGNLETCLRLLSLGAQANFFH--PEKGNTPLHVAAKAGQILQAELLAVYGADPGAQDS  198 (669)
T ss_pred             CCCCcchhhHHHHHHHHHHHhhcccHHHHHHHHHcccccCCCC--cccCCchhHHHHhccchhhhhHHhhccCCCCCCCC
Confidence            34555543      35899999999999988999999865433  25799999999999999999999999999999999


Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhc
Q 031838          113 GGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus       113 ~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                      .|.||+.+|...|+.++++.|++.
T Consensus       199 ~GmtP~~~AR~~gH~~laeRl~e~  222 (669)
T KOG0818|consen  199 SGMTPVDYARQGGHHELAERLVEI  222 (669)
T ss_pred             CCCcHHHHHHhcCchHHHHHHHHH
Confidence            999999999999999998888764

>PF13606 Ank_3: Ankyrin repeat

Probab=99.10  E-value=2.4e-10  Score=50.08  Aligned_cols=29  Identities=48%  Similarity=0.776  Sum_probs=22.2

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 031838          113 GGRTALHYAASKGWLKIVELLISRGAKIN  141 (152)
Q Consensus       113 ~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~  141 (152)
                      +|+||||+|++.|+.+++++|+++|++++
T Consensus         1 ~G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    1 NGNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            36778888888888888888888777765

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=99.05  E-value=4.9e-10  Score=50.40  Aligned_cols=33  Identities=52%  Similarity=0.868  Sum_probs=24.0

Q ss_pred             CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccc
Q 031838          113 GGRTALHYAASKGWLKIVELLISRGAKINSKDK  145 (152)
Q Consensus       113 ~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (152)
                      +|.||||+|+..++.+++++|+++|++++.+|+
T Consensus         1 dG~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~   33 (33)
T PF00023_consen    1 DGNTPLHYAAQRGHPDIVKLLLKHGADINARDN   33 (33)
T ss_dssp             TSBBHHHHHHHTTCHHHHHHHHHTTSCTTCBCT
T ss_pred             CcccHHHHHHHHHHHHHHHHHHHCcCCCCCCCC
Confidence            366777777777777777777777777776653

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0506 consensus Glutaminase (contains ankyrin repeat) [Amino acid transport and metabolism]

Probab=99.01  E-value=6.9e-10  Score=76.76  Aligned_cols=90  Identities=32%  Similarity=0.421  Sum_probs=80.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcC-CCCccccccCCCCChhhHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVD-ESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~-~~~~~~~~~~~~~~t~l~~   87 (152)
                      .+...+++|++.|++..++.+.-++  .+++.+|.+.+|+||.|+.-|+.+++++++... .+   ...+|.+|+|||.-
T Consensus       505 ~~~i~~~~aa~~GD~~alrRf~l~g--~D~~~~DyD~RTaLHvAAaEG~v~v~kfl~~~~kv~---~~~kDRw~rtPlDd  579 (622)
T KOG0506|consen  505 DTVINVMYAAKNGDLSALRRFALQG--MDLETKDYDDRTALHVAAAEGHVEVVKFLLNACKVD---PDPKDRWGRTPLDD  579 (622)
T ss_pred             cchhhhhhhhhcCCHHHHHHHHHhc--ccccccccccchhheeecccCceeHHHHHHHHHcCC---CChhhccCCCcchH
Confidence            4567899999999999999988876  688899999999999999999999999999753 33   67789999999999


Q ss_pred             HHhcCCHHHHHHHHHc
Q 031838           88 AASIGNVTIVEMLLSK  103 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~  103 (152)
                      |..+++.+++++|-+.
T Consensus       580 A~~F~h~~v~k~L~~~  595 (622)
T KOG0506|consen  580 AKHFKHKEVVKLLEEA  595 (622)
T ss_pred             hHhcCcHHHHHHHHHH
Confidence            9999999999998876

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.94  E-value=6.1e-09  Score=73.77  Aligned_cols=92  Identities=28%  Similarity=0.428  Sum_probs=77.9

Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCcccccc-CCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCH
Q 031838           49 LHVAASCGHPEVVEILLSVDESANVVNAV-DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWL  127 (152)
Q Consensus        49 l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~  127 (152)
                      |.-|+...+...+-+|+++|......+.. +..|.|+||+||..|+..+.++|+=+|+++..+|..|.|+|.||.+.|.-
T Consensus       628 Ll~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~dv~~rda~g~t~l~yar~a~sq  707 (749)
T KOG0705|consen  628 LLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVDVMARDAHGRTALFYARQAGSQ  707 (749)
T ss_pred             HHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCccceecccCCchhhhhHhhcccH
Confidence            45566667788888899888765543333 45679999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCC
Q 031838          128 KIVELLISRGAKI  140 (152)
Q Consensus       128 ~~~~~Ll~~g~~~  140 (152)
                      +|+.+|+++|+--
T Consensus       708 ec~d~llq~gcp~  720 (749)
T KOG0705|consen  708 ECIDVLLQYGCPD  720 (749)
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999998644

>KOG0818 consensus GTPase-activating proteins of the GIT family [Signal transduction mechanisms]

Probab=98.93  E-value=1e-08  Score=71.46  Aligned_cols=88  Identities=26%  Similarity=0.306  Sum_probs=74.8

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      ...||.+++.|++++-..|+..|.+.++. ..+.|.||||.|++.|..--+++|+-+|++   +...|..|.||+.+|-.
T Consensus       134 srQLhasvRt~nlet~LRll~lGA~~N~~-hpekg~TpLHvAAk~Gq~~Q~ElL~vYGAD---~~a~d~~GmtP~~~AR~  209 (669)
T KOG0818|consen  134 SKQLHSSVRTGNLETCLRLLSLGAQANFF-HPEKGNTPLHVAAKAGQILQAELLAVYGAD---PGAQDSSGMTPVDYARQ  209 (669)
T ss_pred             HHHHHHHhhcccHHHHHHHHHcccccCCC-CcccCCchhHHHHhccchhhhhHHhhccCC---CCCCCCCCCcHHHHHHh
Confidence            35689999999999999999988443332 334589999999999999999999999999   67789999999999999


Q ss_pred             cCCHHHHHHHHH
Q 031838           91 IGNVTIVEMLLS  102 (152)
Q Consensus        91 ~~~~~~~~~l~~  102 (152)
                      .|+.++.+.|++
T Consensus       210 ~gH~~laeRl~e  221 (669)
T KOG0818|consen  210 GGHHELAERLVE  221 (669)
T ss_pred             cCchHHHHHHHH
Confidence            999888776665

>PF13606 Ank_3: Ankyrin repeat

Probab=98.92  E-value=2.4e-09  Score=46.87  Aligned_cols=28  Identities=61%  Similarity=0.876  Sum_probs=15.5

Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCc
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVN  108 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~  108 (152)
                      |+||||+|+..|+.+++++|+++|++++
T Consensus         2 G~T~Lh~A~~~g~~e~v~~Ll~~gadvn   29 (30)
T PF13606_consen    2 GNTPLHLAASNGNIEIVKYLLEHGADVN   29 (30)
T ss_pred             CCCHHHHHHHhCCHHHHHHHHHcCCCCC
Confidence            4555555555555555555555555443

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=98.91  E-value=3.9e-09  Score=74.88  Aligned_cols=97  Identities=24%  Similarity=0.281  Sum_probs=86.8

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      -++....-+.||+|++.|+-++|+++++.++...+++.++.|.|+||.|+..++..++.++++.|+.   +...|..|.|
T Consensus       893 l~~~~~~~sllh~a~~tg~~eivkyildh~p~elld~~de~get~lhkaa~~~~r~vc~~lvdagas---l~ktd~kg~t  969 (1004)
T KOG0782|consen  893 LIQGPDHCSLLHYAAKTGNGEIVKYILDHGPSELLDMADETGETALHKAACQRNRAVCQLLVDAGAS---LRKTDSKGKT  969 (1004)
T ss_pred             EeeCcchhhHHHHHHhcCChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHHHhcchHHHHHHHhcchh---heecccCCCC
Confidence            3455566789999999999999999999987778889999999999999999999999999988877   7778899999


Q ss_pred             hhHHHHhcCCHHHHHHHHHc
Q 031838           84 PIHSAASIGNVTIVEMLLSK  103 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~  103 (152)
                      |-..|-+.++.+++.+|-..
T Consensus       970 p~eraqqa~d~dlaayle~r  989 (1004)
T KOG0782|consen  970 PQERAQQAGDPDLAAYLESR  989 (1004)
T ss_pred             hHHHHHhcCCchHHHHHhhh
Confidence            99999999999999988654

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=98.88  E-value=5e-09  Score=47.05  Aligned_cols=31  Identities=45%  Similarity=0.764  Sum_probs=18.6

Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN  111 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~  111 (152)
                      |.||||+|+..++.+++++|++.|++++.+|
T Consensus         2 G~TpLh~A~~~~~~~~v~~Ll~~ga~~~~~d   32 (33)
T PF00023_consen    2 GNTPLHYAAQRGHPDIVKLLLKHGADINARD   32 (33)
T ss_dssp             SBBHHHHHHHTTCHHHHHHHHHTTSCTTCBC
T ss_pred             cccHHHHHHHHHHHHHHHHHHHCcCCCCCCC
Confidence            5566666666666666666666666655543

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.87  E-value=1.3e-08  Score=71.31  Aligned_cols=89  Identities=35%  Similarity=0.499  Sum_probs=66.1

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      .++|.+....+.+.....+.......++.+|..|.||||.|+..|+.+.++.|+..+++   +..++..|+++||-|+..
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Ad---v~~kN~~gWs~L~EAv~~   98 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVSLVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGAD---VSIKNNEGWSPLHEAVST   98 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhhceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCC---ccccccccccHHHHHHHc
Confidence            35778888877777766544434566777788888888888888888888888877776   566677888888888888


Q ss_pred             CCHHHHHHHHHc
Q 031838           92 GNVTIVEMLLSK  103 (152)
Q Consensus        92 ~~~~~~~~l~~~  103 (152)
                      |+.+++..++.+
T Consensus        99 g~~q~i~~vlr~  110 (560)
T KOG0522|consen   99 GNEQIITEVLRH  110 (560)
T ss_pred             CCHHHHHHHHHH
Confidence            888777666654

>KOG0522 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.87  E-value=1.4e-08  Score=71.21  Aligned_cols=88  Identities=34%  Similarity=0.472  Sum_probs=66.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 031838           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (152)
Q Consensus        47 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~  126 (152)
                      .|+|+++.....+-....+..... ..+...|..|.||||.|+..|+...++.|+..|+++..+|..|++|||-|+..|+
T Consensus        22 ~~lh~~~~~~~~~sl~~el~~~~~-~~id~~D~~g~TpLhlAV~Lg~~~~a~~Ll~a~Adv~~kN~~gWs~L~EAv~~g~  100 (560)
T KOG0522|consen   22 KPLHWAVVTTDSDSLEQELLAKVS-LVIDRRDPPGRTPLHLAVRLGHVEAARILLSAGADVSIKNNEGWSPLHEAVSTGN  100 (560)
T ss_pred             cccchhhhccchhhHHHHHhhhhh-ceeccccCCCCccHHHHHHhcCHHHHHHHHhcCCCccccccccccHHHHHHHcCC
Confidence            458888887776655444333222 2266778888999999999999999998988888888888899999999998888


Q ss_pred             HHHHHHHHh
Q 031838          127 LKIVELLIS  135 (152)
Q Consensus       127 ~~~~~~Ll~  135 (152)
                      .+++..++.
T Consensus       101 ~q~i~~vlr  109 (560)
T KOG0522|consen  101 EQIITEVLR  109 (560)
T ss_pred             HHHHHHHHH
Confidence            876655543

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=98.87  E-value=3.4e-08  Score=72.78  Aligned_cols=127  Identities=24%  Similarity=0.279  Sum_probs=101.2

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcc--cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChh
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~   84 (152)
                      ...+......|++.|++-.|+.+++....  .+++.+|.-|+++++.|..+.+.++.++++..+..     .     ..+
T Consensus        22 l~~~e~~fL~a~E~gd~~~V~k~l~~~~~~~lninc~d~lGr~al~iai~nenle~~eLLl~~~~~-----~-----gdA   91 (822)
T KOG3609|consen   22 LNEGEKGFLLAHENGDVPLVAKALEYKAVSKLNINCRDPLGRLALHIAIDNENLELQELLLDTSSE-----E-----GDA   91 (822)
T ss_pred             cchhhHHHHHHHHcCChHHHHHHHHhccccccchhccChHhhhceecccccccHHHHHHHhcCccc-----c-----chH
Confidence            44556778899999999999999886433  56778999999999999999999999999875432     1     457


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCc----c------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCc
Q 031838           85 IHSAASIGNVTIVEMLLSKGADVN----L------KNDGGRTALHYAASKGWLKIVELLISRGAKINSK  143 (152)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~----~------~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~  143 (152)
                      |-+|+..|..++++.++.+-....    .      .-.-+-||+..|+..+++||+++|+++|+.+...
T Consensus        92 LL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen   92 LLLAIAVGSVPLVELLLVHFVDAPYLERSGDANSPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccchhccccccCcccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            889999999999999997622210    0      0112469999999999999999999999888543

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.86  E-value=2.5e-08  Score=70.80  Aligned_cols=96  Identities=24%  Similarity=0.291  Sum_probs=81.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccc--cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLS--LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~--~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      -..-|..|....++.++-.|+..+....++  ..+.+|+|+||+||+.|+..+.++|+=++.+   ...+|..|+|+|++
T Consensus       624 lgqqLl~A~~~~Dl~t~~lLLAhg~~~e~~~t~~~~~grt~LHLa~~~gnVvl~QLLiWyg~d---v~~rda~g~t~l~y  700 (749)
T KOG0705|consen  624 LGQQLLRAVAAEDLQTAILLLAHGSREEVNETCGEGDGRTALHLAARKGNVVLAQLLIWYGVD---VMARDAHGRTALFY  700 (749)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhccCchhhhccccCCCCcchhhhhhhhcchhHHHHHHHhCcc---ceecccCCchhhhh
Confidence            345688899999999999999887433333  3556789999999999999999999988887   67789999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCc
Q 031838           88 AASIGNVTIVEMLLSKGADVN  108 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~  108 (152)
                      |-..|..+|+..|+.+|+..+
T Consensus       701 ar~a~sqec~d~llq~gcp~e  721 (749)
T KOG0705|consen  701 ARQAGSQECIDVLLQYGCPDE  721 (749)
T ss_pred             HhhcccHHHHHHHHHcCCCcc
Confidence            999999999999999998644

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.54  E-value=3.8e-07  Score=62.03  Aligned_cols=69  Identities=28%  Similarity=0.301  Sum_probs=53.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 031838           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (152)
Q Consensus        46 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~p  117 (152)
                      ..-|.+||+.|..+.+++|++.|.+   +|..|.....||.+|+..||.+++++|+++|+.-..-...|.-.
T Consensus        37 f~elceacR~GD~d~v~~LVetgvn---VN~vD~fD~spL~lAsLcGHe~vvklLLenGAiC~rdtf~G~RC  105 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETGVN---VNAVDRFDSSPLYLASLCGHEDVVKLLLENGAICSRDTFDGDRC  105 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhCCC---cchhhcccccHHHHHHHcCcHHHHHHHHHcCCcccccccCcchh
Confidence            4567888888888888888887766   67778888888888888888888888888887554444455443

>KOG0511 consensus Ankyrin repeat protein [General function prediction only]

Probab=98.51  E-value=5.7e-07  Score=61.22  Aligned_cols=76  Identities=24%  Similarity=0.275  Sum_probs=62.3

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      ...|..|++.|+.+.|++|++.|  .+++.+|.+-.+||.+|+..||.+++++|+++|+-   .......|... |+++.
T Consensus        37 f~elceacR~GD~d~v~~LVetg--vnVN~vD~fD~spL~lAsLcGHe~vvklLLenGAi---C~rdtf~G~RC-~YgaL  110 (516)
T KOG0511|consen   37 FGELCEACRAGDVDRVRYLVETG--VNVNAVDRFDSSPLYLASLCGHEDVVKLLLENGAI---CSRDTFDGDRC-HYGAL  110 (516)
T ss_pred             hHHHHHHhhcccHHHHHHHHHhC--CCcchhhcccccHHHHHHHcCcHHHHHHHHHcCCc---ccccccCcchh-hhhhh
Confidence            56799999999999999999976  78999999999999999999999999999998875   43333455544 45544


Q ss_pred             cC
Q 031838           91 IG   92 (152)
Q Consensus        91 ~~   92 (152)
                      ..
T Consensus       111 nd  112 (516)
T KOG0511|consen  111 ND  112 (516)
T ss_pred             hH
Confidence            33

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.41  E-value=1.8e-06  Score=53.47  Aligned_cols=70  Identities=24%  Similarity=0.236  Sum_probs=57.2

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCC
Q 031838           36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV  107 (152)
Q Consensus        36 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~  107 (152)
                      .+++.+|..|+|+++.|+.-|..+.+.+++.++..-  +...|..+.+++-.|-+.|..+++..|.+.-.+.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg~a~--vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~et   72 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRGVAF--VGVTDESSLDAAQLAEKGGAQAFVHSLFENDRET   72 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccCccc--ccccccccchHHHHHHhcChHHHHHHHHHHhccC
Confidence            467888999999999999999999999999887332  5667888889988999999999998888774443

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.37  E-value=8.3e-07  Score=66.71  Aligned_cols=88  Identities=38%  Similarity=0.516  Sum_probs=76.1

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 031838           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (152)
Q Consensus        43 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~  122 (152)
                      ..|.++||.|+..+..-++++++.++++   ++..+..|.+|+|.+...|+......++++|++.+..+..|.+|+.+|.
T Consensus       654 ~~~~s~lh~a~~~~~~~~~e~ll~~ga~---vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~~a~  730 (785)
T KOG0521|consen  654 CIGCSLLHVAVGTGDSGAVELLLQNGAD---VNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLDIAM  730 (785)
T ss_pred             hcccchhhhhhccchHHHHHHHHhcCCc---chhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhhHHh
Confidence            4478999999999999999999998888   7888899999999999999999999999999999999999999999997


Q ss_pred             HcCCHHHHHHH
Q 031838          123 SKGWLKIVELL  133 (152)
Q Consensus       123 ~~~~~~~~~~L  133 (152)
                      ...+.+++-++
T Consensus       731 ~~~~~d~~~l~  741 (785)
T KOG0521|consen  731 EAANADIVLLL  741 (785)
T ss_pred             hhccccHHHHH
Confidence            77655544433

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.31  E-value=1.5e-06  Score=65.77  Aligned_cols=125  Identities=22%  Similarity=0.229  Sum_probs=90.9

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHh-hcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQ-QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .-.+++.+|.+...+....++.+++- +  ......+.+|...+|+ |..+++++.-+++.  .++..++.+|..|+|||
T Consensus       571 ~~r~~lllhL~a~~lyawLie~~~e~~~--~~~~eld~d~qgV~hf-ca~lg~ewA~ll~~--~~~~ai~i~D~~G~tpL  645 (975)
T KOG0520|consen  571 NFRDMLLLHLLAELLYAWLIEKVIEWAG--SGDLELDRDGQGVIHF-CAALGYEWAFLPIS--ADGVAIDIRDRNGWTPL  645 (975)
T ss_pred             CCcchHHHHHHHHHhHHHHHHHHhcccc--cCchhhcccCCChhhH-hhhcCCceeEEEEe--ecccccccccCCCCccc
Confidence            44578899999999988888888884 3  3344556677888888 45566665444432  23333788899999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCccc------CCCCCcHHHHHHHcCCHHHHHHHHhc
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~------~~~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                      |+|+..|+..++..|+..|+.....      .-.|.|+...|...|+..+..+|-+.
T Consensus       646 ~wAa~~G~e~l~a~l~~lga~~~~~tdps~~~p~g~ta~~la~s~g~~gia~~lse~  702 (975)
T KOG0520|consen  646 HWAAFRGREKLVASLIELGADPGAVTDPSPETPGGKTAADLARANGHKGIAGYLSEK  702 (975)
T ss_pred             chHhhcCHHHHHHHHHHhccccccccCCCCCCCCCCchhhhhhcccccchHHHHhhh
Confidence            9999999999999999776654322      22477888899888887777766554

>KOG0521 consensus Putative GTPase activating proteins (GAPs) [Signal transduction mechanisms]

Probab=98.24  E-value=1e-06  Score=66.30  Aligned_cols=73  Identities=38%  Similarity=0.525  Sum_probs=69.7

Q ss_pred             CCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|.+++|.|+..+.....++|++.|.+++..+..|.+|+|.+...|+...+..|+++|++....+..|.+|+.
T Consensus       655 ~~~s~lh~a~~~~~~~~~e~ll~~ga~vn~~d~~g~~plh~~~~~g~~~~~~~ll~~~a~~~a~~~~~~~~l~  727 (785)
T KOG0521|consen  655 IGCSLLHVAVGTGDSGAVELLLQNGADVNALDSKGRTPLHHATASGHTSIACLLLKRGADPNAFDPDGKLPLD  727 (785)
T ss_pred             cccchhhhhhccchHHHHHHHHhcCCcchhhhccCCCcchhhhhhcccchhhhhccccccccccCccCcchhh
Confidence            5689999999999999999999999999999999999999999999999999999999999999999999874

>KOG2384 consensus Major histocompatibility complex protein BAT4, contains G-patch and ankyrin domains [General function prediction only]

Probab=98.12  E-value=1.5e-05  Score=49.59  Aligned_cols=68  Identities=15%  Similarity=0.179  Sum_probs=61.2

Q ss_pred             CCcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC
Q 031838            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE   69 (152)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~   69 (152)
                      .|+|.++.+|-|+++.|+..|+.+.+.+|+..+ -..+...+..|.+.+.+|=+.|..+++..|.+.-.
T Consensus         3 ~~in~rD~fgWTalmcaa~eg~~eavsyllgrg-~a~vgv~d~ssldaaqlaek~g~~~fvh~lfe~~~   70 (223)
T KOG2384|consen    3 GNINARDAFGWTALMCAAMEGSNEAVSYLLGRG-VAFVGVTDESSLDAAQLAEKGGAQAFVHSLFENDR   70 (223)
T ss_pred             CCccchhhhcchHHHHHhhhcchhHHHHHhccC-cccccccccccchHHHHHHhcChHHHHHHHHHHhc
Confidence            478999999999999999999999999999988 36788899999999999999999999999887643

>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]

Probab=98.09  E-value=5e-06  Score=63.00  Aligned_cols=101  Identities=27%  Similarity=0.290  Sum_probs=76.4

Q ss_pred             ccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCccccccCCCCChhhHHHHhcCCHHHHHHHHH-cCCCCcccCCCC
Q 031838           37 SLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGG  114 (152)
Q Consensus        37 ~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~  114 (152)
                      ........|.+.+|.++..+..-+++.+++- +..   ....+..+...+|. |..++.+++-+++. .|..++++|..|
T Consensus       566 ~~~~~~~r~~lllhL~a~~lyawLie~~~e~~~~~---~~eld~d~qgV~hf-ca~lg~ewA~ll~~~~~~ai~i~D~~G  641 (975)
T KOG0520|consen  566 LSSSVNFRDMLLLHLLAELLYAWLIEKVIEWAGSG---DLELDRDGQGVIHF-CAALGYEWAFLPISADGVAIDIRDRNG  641 (975)
T ss_pred             ccccCCCcchHHHHHHHHHhHHHHHHHHhcccccC---chhhcccCCChhhH-hhhcCCceeEEEEeecccccccccCCC
Confidence            3445555688999999999988888888764 222   33445666666666 55566666665654 489999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 031838          115 RTALHYAASKGWLKIVELLISRGAKIN  141 (152)
Q Consensus       115 ~~pl~~a~~~~~~~~~~~Ll~~g~~~~  141 (152)
                      +||||+|...|+..++..|.+.|++..
T Consensus       642 ~tpL~wAa~~G~e~l~a~l~~lga~~~  668 (975)
T KOG0520|consen  642 WTPLHWAAFRGREKLVASLIELGADPG  668 (975)
T ss_pred             CcccchHhhcCHHHHHHHHHHhccccc
Confidence            999999999999999999998776553

>KOG3609 consensus Receptor-activated Ca2+-permeable cation channels (STRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=97.97  E-value=3.3e-05  Score=57.68  Aligned_cols=100  Identities=19%  Similarity=0.200  Sum_probs=77.8

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc-------c
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-------V   74 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-------~   74 (152)
                      ++|-.+..|.+.|+.|+...+.+..+.|++...  .  .     ..+|.+|+..+..+.++.++........       -
T Consensus        54 ninc~d~lGr~al~iai~nenle~~eLLl~~~~--~--~-----gdALL~aI~~~~v~~VE~ll~~~~~~~~~~~~~d~~  124 (822)
T KOG3609|consen   54 NINCRDPLGRLALHIAIDNENLELQELLLDTSS--E--E-----GDALLLAIAVGSVPLVELLLVHFVDAPYLERSGDAN  124 (822)
T ss_pred             chhccChHhhhceecccccccHHHHHHHhcCcc--c--c-----chHHHHHHHHHHHHHHHHHHhcccccchhccccccC
Confidence            456677889999999999999999999998751  1  1     3688889999999999999976432100       0


Q ss_pred             cccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCccc
Q 031838           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK  110 (152)
Q Consensus        75 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~  110 (152)
                      ...-..+.||+..|+..++.+|+++|++.|..+..+
T Consensus       125 ~~~ft~ditPliLAAh~NnyEil~~Ll~kg~~i~~P  160 (822)
T KOG3609|consen  125 SPHFTPDITPLMLAAHLNNFEILQCLLTRGHCIPIP  160 (822)
T ss_pred             cccCCCCccHHHHHHHhcchHHHHHHHHcCCCCCCC
Confidence            111245679999999999999999999998876543

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.89  E-value=3.2e-05  Score=54.66  Aligned_cols=58  Identities=29%  Similarity=0.310  Sum_probs=35.4

Q ss_pred             HHHHHHHHHcCCCCcc------cCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           94 VTIVEMLLSKGADVNL------KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        94 ~~~~~~l~~~~~~~~~------~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      ...+++|.+.+...|.      .+..-.|+||+|+..|...++.+||+.|+|+..+|.+|+||+
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy  467 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPY  467 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcc
Confidence            4455566655544332      122334667777777777777777777777777777777765

>smart00248 ANK ankyrin repeats

Probab=97.59  E-value=0.00025  Score=29.56  Aligned_cols=27  Identities=56%  Similarity=0.904  Sum_probs=17.4

Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 031838          114 GRTALHYAASKGWLKIVELLISRGAKI  140 (152)
Q Consensus       114 ~~~pl~~a~~~~~~~~~~~Ll~~g~~~  140 (152)
                      +.+|+++|+..++.++++.|++.|.++
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~~~~   28 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKGADI   28 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCC
Confidence            456666666666666666666666544

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>KOG2505 consensus Ankyrin repeat protein [General function prediction only]

Probab=97.44  E-value=0.00049  Score=48.93  Aligned_cols=65  Identities=31%  Similarity=0.334  Sum_probs=49.9

Q ss_pred             HHHHHHHHhcCCCCcc---ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 031838           58 PEVVEILLSVDESANV---VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (152)
Q Consensus        58 ~~~~~~ll~~~~~~~~---~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~  122 (152)
                      ...++++.+.+.+++.   ....+....|+||+|+..|..+++.+|++.|+++..+|..|.||+.++.
T Consensus       404 p~~ie~lken~lsgnf~~~pe~~~~ltsT~LH~aa~qg~~k~v~~~Leeg~Dp~~kd~~Grtpy~ls~  471 (591)
T KOG2505|consen  404 PDSIEALKENLLSGNFDVTPEANDYLTSTFLHYAAAQGARKCVKYFLEEGCDPSTKDGAGRTPYSLSA  471 (591)
T ss_pred             hhHHHHHHhcCCcccccccccccccccchHHHHHHhcchHHHHHHHHHhcCCchhcccCCCCcccccc
Confidence            5567777776655422   1112334678999999999999999999999999999999999998886

>smart00248 ANK ankyrin repeats

Probab=97.29  E-value=0.00075  Score=27.95  Aligned_cols=24  Identities=50%  Similarity=0.650  Sum_probs=12.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcC
Q 031838           45 DRTLLHVAASCGHPEVVEILLSVD   68 (152)
Q Consensus        45 g~t~l~~a~~~~~~~~~~~ll~~~   68 (152)
                      |.+|+|+|+..++.++++.++..+
T Consensus         2 ~~~~l~~~~~~~~~~~~~~ll~~~   25 (30)
T smart00248        2 GRTPLHLAAENGNLEVVKLLLDKG   25 (30)
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcC
Confidence            445555555555555555555443

Ankyrin repeats are about 33 amino acids long and occur in at least four consecutive copies. They are involved in protein-protein interactions. The core of the repeat seems to be an helix-loop-helix structure.

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=97.20  E-value=0.0065  Score=39.28  Aligned_cols=116  Identities=21%  Similarity=0.248  Sum_probs=79.0

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCC----CCChhhHH
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE----EGWAPIHS   87 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~----~~~t~l~~   87 (152)
                      -.|-.|+..-+.+.+..++...         ..-.+++-++...+.-+++.+|+.+-.    ...+|.    .+.--+.+
T Consensus       155 isledAV~AsN~~~i~~~VtdK---------kdA~~Am~~si~~~K~dva~~lls~f~----ft~~dv~~~~~~~ydieY  221 (284)
T PF06128_consen  155 ISLEDAVKASNYEEISNLVTDK---------KDAHQAMWLSIGNAKEDVALYLLSKFN----FTKQDVASMEKELYDIEY  221 (284)
T ss_pred             ccHHHHHhhcCHHHHHHHhcch---------HHHHHHHHHHhcccHHHHHHHHHhhcc----eecchhhhcCcchhhHHH
Confidence            3455677777777776666543         112477888888888999999986532    222222    12223344


Q ss_pred             HHh--cCCHHHHHHHHHcC-CCCccc---CCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 031838           88 AAS--IGNVTIVEMLLSKG-ADVNLK---NDGGRTALHYAASKGWLKIVELLISRGAKI  140 (152)
Q Consensus        88 a~~--~~~~~~~~~l~~~~-~~~~~~---~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~  140 (152)
                      +..  .-+..++++++.+| ++++.+   -..|.|.|.-|...++.+++.+|+++||-.
T Consensus       222 ~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtMLDNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  222 LLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTMLDNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HHhhcCCcHHHHHHHHhccccccchhhhccCCcchHHHhHHhcCcHHHHHHHHHcCccc
Confidence            443  34567889999887 455532   446899999999999999999999999844

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF03158 DUF249: Multigene family 530 protein; InterPro: IPR004858 This entry represents multigene family 530 proteins from African swine fever virus (ASFV) viruses

Probab=96.50  E-value=0.043  Score=34.43  Aligned_cols=49  Identities=12%  Similarity=0.110  Sum_probs=34.0

Q ss_pred             HHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHh
Q 031838           13 DLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLS   66 (152)
Q Consensus        13 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~   66 (152)
                      .+..|++.+-+.++++.-+.-. ..    -...++.+..||+..+.++++|+-.
T Consensus        49 Ll~HAVk~nmL~ILqkyke~L~-~~----~~~~q~LFElAC~~qkydiV~WI~q   97 (192)
T PF03158_consen   49 LLYHAVKYNMLSILQKYKEDLE-NE----RYLNQELFELACEEQKYDIVKWIGQ   97 (192)
T ss_pred             HHHHHHHcCcHHHHHHHHHHhh-cc----hhHHHHHHHHHHHHccccHHHHHhh
Confidence            4667788887888877766431 11    1235678888998889999988853

These proteins may be involved in promoting survival of infected macrophages [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=95.92  E-value=0.04  Score=29.47  Aligned_cols=49  Identities=18%  Similarity=0.142  Sum_probs=36.3

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhc
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV   67 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~   67 (152)
                      ....+..|+..|+.|+++.+++.+   .++      ...+..|+...+.++++++++.
T Consensus         6 t~~tl~~Ai~GGN~eII~~c~~~~---~~~------~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    6 TKKTLEYAIIGGNFEIINICLKKN---KPD------NDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             CHHHHHHHHhCCCHHHHHHHHHHh---ccH------HHHHHHHHHHhhHHHHHHHHHh
Confidence            456778888888888888887644   111      4568888888888888888764

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

>PF06128 Shigella_OspC: Shigella flexneri OspC protein; InterPro: IPR010366 This family consists of the Shigella flexneri specific protein OspC

Probab=95.33  E-value=0.23  Score=32.44  Aligned_cols=96  Identities=13%  Similarity=0.092  Sum_probs=63.6

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcc--cccccCCCCCchHHHHHHH--cCCHHHHHHHHhcCC-CCccccccCCCCChhh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAAS--CGHPEVVEILLSVDE-SANVVNAVDEEGWAPI   85 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~g~t~l~~a~~--~~~~~~~~~ll~~~~-~~~~~~~~~~~~~t~l   85 (152)
                      -+.+..|+..+.-+++.+|+++...  .++-.-. .+.--+.++..  .....++++++.+|- +++..-.+-.+|.|-|
T Consensus       180 ~~Am~~si~~~K~dva~~lls~f~ft~~dv~~~~-~~~ydieY~LS~h~a~~kvL~~Fi~~Glv~vN~~F~~~NSGdtML  258 (284)
T PF06128_consen  180 HQAMWLSIGNAKEDVALYLLSKFNFTKQDVASME-KELYDIEYLLSEHSASYKVLEYFINRGLVDVNKKFQKVNSGDTML  258 (284)
T ss_pred             HHHHHHHhcccHHHHHHHHHhhcceecchhhhcC-cchhhHHHHHhhcCCcHHHHHHHHhccccccchhhhccCCcchHH
Confidence            3678889988888999999886411  1111111 12223445443  336778999998763 2221222336789999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCC
Q 031838           86 HSAASIGNVTIVEMLLSKGADV  107 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~  107 (152)
                      ..|..+++.+++..|+++|+..
T Consensus       259 DNA~Ky~~~emi~~Llk~GA~~  280 (284)
T PF06128_consen  259 DNAMKYKNSEMIAFLLKYGAIS  280 (284)
T ss_pred             HhHHhcCcHHHHHHHHHcCccc
Confidence            9999999999999999998743

The function of this family is unknown but it is thought that Osp proteins may be involved in postinvasion events related to virulence. Since bacterial pathogens adapt to multiple environments during the course of infecting a host, it has been proposed that Shigella evolved a mechanism to take advantage of a unique intracellular cue, which is mediated through MxiE, to express proteins when the organism reaches the eukaryotic cytosol [].

>PF11929 DUF3447: Domain of unknown function (DUF3447); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.74  E-value=0.23  Score=26.49  Aligned_cols=48  Identities=21%  Similarity=0.238  Sum_probs=38.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHc
Q 031838           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK  103 (152)
Q Consensus        46 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~  103 (152)
                      ...+..|+..|..++++.+++.+..          ....+..|+...+-++++||++.
T Consensus         7 ~~tl~~Ai~GGN~eII~~c~~~~~~----------~~~~l~~AI~~H~n~i~~~l~~~   54 (76)
T PF11929_consen    7 KKTLEYAIIGGNFEIINICLKKNKP----------DNDCLEYAIKSHNNEIADWLIEN   54 (76)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHhcc----------HHHHHHHHHHHhhHHHHHHHHHh
Confidence            4678999999999999988854421          13468899999999999999876

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	152
4hqd_A	169	Crystal Structure Of Engineered Protein. Northeast		6e-22
3zu7_B	169	Crystal Structure Of A Designed Selected Ankyrin Re		2e-21
4gpm_A	169	Crystal Structure Of Engineered Protein. Northeast		8e-21
2xeh_A	157	Structural Determinants For Improved Thermal Stabil		1e-20
2xee_A	157	Structural Determinants For Improved Thermal Stabil		1e-20
2qyj_A	166	Crystal Structure Of A Designed Full Consensus Anky		1e-20
4hb5_A	169	Crystal Structure Of Engineered Protein. Northeast		2e-20
4atz_D	154	Ad5 Knob In Complex With A Designed Ankyrin Repeat		2e-20
1n0r_A	126	4ank: A Designed Ankyrin Repeat Protein With Four I		3e-20
1mj0_A	166	Sank E3_5: An Artificial Ankyrin Repeat Protein Len		6e-20
2j8s_D	169	Drug Export Pathway Of Multidrug Exporter Acrb Reve		7e-20
2bkk_B	169	Crystal Structure Of Aminoglycoside Phosphotransfer		9e-19
4dui_A	169	Darpin D1 Binding To Tubulin Beta Chain (not In Com		1e-18
4drx_E	169	Gtp-Tubulin In Complex With A Darpin Length = 169		2e-18
3noc_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		2e-18
2bkg_A	166	Crystal Structure Of E3_19 An Designed Ankyrin Repe		2e-18
4f6r_D	169	Tubulin:stathmin-Like Domain Complex Length = 169		2e-18
2p2c_P	169	Inhibition Of Caspase-2 By A Designed Ankyrin Repea		3e-18
1svx_A	169	Crystal Structure Of A Designed Selected Ankyrin Re		5e-18
1uoh_A	226	Human Gankyrin Length = 226		5e-18
1qym_A	227	X-Ray Structure Of Human Gankyrin Length = 227		6e-18
2v5q_C	167	Crystal Structure Of Wild-type Plk-1 Kinase Domain		7e-18
4gmr_A	169	Crystal Structure Of Engineered Protein. Northeast		7e-18
2y1l_E	169	Caspase-8 In Complex With Darpin-8.4 Length = 169		9e-18
2dvw_A	231	Structure Of The Oncoprotein Gankyrin In Complex Wi		9e-18
3aji_A	231	Structure Of Gankyrin-S6atpase Photo-Cross-Linked S		1e-17
3nog_D	169	Designed Ankyrin Repeat Protein (Darpin) Binders To		1e-17
1n0q_A	93	3ank: A Designed Ankyrin Repeat Protein With Three		1e-17
3q9u_C	158	In Silico And In Vitro Co-Evolution Of A High Affin		7e-17
3zuv_B	136	Crystal Structure Of A Designed Selected Ankyrin Re		7e-17
2y0b_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4_		4e-15
2xzt_G	136	Caspase-3 In Complex With Darpin-3.4_i78s Length =		5e-15
2xzd_G	136	Caspase-3 In Complex With An Inhibitory Darpin-3.4		1e-14
1awc_B	153	Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 1		2e-14
2v4h_C	136	Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 13		7e-14
1ixv_A	231	Crystal Structure Analysis Of Homolog Of Oncoprotei		1e-13
2dzn_A	228	Crystal Structure Analysis Of Yeast Nas6p Complexed		1e-13
1wg0_A	243	Structural Comparison Of Nas6p Protein Structures I		1e-13
2l6b_A	115	Nrc Consensus Ankyrin Repeat Protein Solution Struc		1e-13
4grg_A	135	Crystal Structure Of Ige Complexed With E2_79, An A		2e-13
3b7b_A	237	Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Le		2e-12
2jab_A	136	A Designed Ankyrin Repeat Protein Evolved To Picomo		2e-12
3hg0_D	136	Crystal Structure Of A Darpin In Complex With Orf49		3e-12
1n11_A	437	D34 Region Of Human Ankyrin-R And Linker Length = 4		5e-12
3v2o_A	183	Crystal Structure Of The Peptide Bound Complex Of T		1e-11
3twr_A	165	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-11
3so8_A	162	Crystal Structure Of Ankra Length = 162		1e-11
3twu_A	167	Crystal Structure Of Arc4 From Human Tankyrase 2 In		1e-11
3twq_A	175	Crystal Structure Of Arc4 From Human Tankyrase 2 (A		1e-11
3v2x_A	167	Crystal Structure Of The Peptide Bound Complex Of T		1e-11
3f6q_A	179	Crystal Structure Of Integrin-Linked Kinase Ankyrin		2e-11
2kbx_A	171	Solution Structure Of Ilk-Pinch Complex Length = 17		2e-11
3c5r_A	137	Crystal Structure Of The Bard1 Ankyrin Repeat Domai		1e-10
4b93_B	269	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		4e-10
3utm_A	351	Crystal Structure Of A Mouse Tankyrase-Axin Complex		5e-10
1wdy_A	285	Crystal Structure Of Ribonuclease Length = 285		9e-10
4g8k_A	337	Intact Sensor Domain Of Human Rnase L In The Inacti		1e-09
1k1b_A	241	Crystal Structure Of The Ankyrin Repeat Domain Of B		2e-09
1mx4_A	168	Structure Of P18ink4c (F82q) Length = 168		1e-08
2xen_A	91	Structural Determinants For Improved Thermal Stabil		1e-08
1mx6_A	168	Structure Of P18ink4c (F92n) Length = 168		1e-08
1ikn_D	236	IkappabalphaNF-Kappab Complex Length = 236		2e-08
1nfi_E	213	I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213		2e-08
1bu9_A	168	Solution Structure Of P18-Ink4c, 21 Structures Leng		2e-08
1ihb_A	162	Crystal Structure Of P18-Ink4c(Ink6) Length = 162		2e-08
4a63_B	239	Crystal Structure Of The P73-Aspp2 Complex At 2.6a		3e-08
1ycs_B	239	P53-53bp2 Complex Length = 239		3e-08
1s70_B	299	Complex Between Protein Ser/thr Phosphatase-1 (delt		3e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		4e-08
1myo_A	118	Solution Structure Of Myotrophin, Nmr, 44 Structure		1e-07
1mx2_A	168	Structure Of F71n Mutant Of P18ink4c Length = 168		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		1e-07
3aaa_C	123	Crystal Structure Of Actin Capping Protein In Compl		2e-07
2zgg_A	92	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		6e-07
3eu9_A	240	The Ankyrin Repeat Domain Of Huntingtin Interacting		1e-06
3uxg_A	172	Crystal Structure Of Rfxank Length = 172		2e-06
3v30_A	172	Crystal Structure Of The Peptide Bound Complex Of T		2e-06
1ot8_A	239	Structure Of The Ankyrin Domain Of The Drosophila N		3e-06
3ehq_A	222	Crystal Structure Of Human Osteoclast Stimulating F		4e-06
2zgd_A	110	Asn-Hydroxylation Stabilises The Ankyrin Repeat Dom		5e-06
2rfm_A	192	Structure Of A Thermophilic Ankyrin Repeat Protein		4e-05
3kea_A	285	Structure Function Studies Of Vaccinia Virus Host-R		4e-05
3hra_A	201	Crystal Structure Of Ef0377 An Ankyrin Repeat Prote		6e-05
1bd8_A	156	Structure Of Cdk Inhibitor P19ink4d Length = 156		8e-05
1bi8_B	166	Mechanism Of G1 Cyclin Dependent Kinase Inhibition		9e-05
2vge_A	229	Crystal Structure Of The C-Terminal Region Of Human		9e-05
3t9k_A	390	Crystal Structure Of Acap1 C-portion Mutant S554d F		1e-04
2fo1_E	373	Crystal Structure Of The Csl-Notch-Mastermind Terna		1e-04
1blx_B	166	P19ink4dCDK6 COMPLEX Length = 166		1e-04
4f1p_A	368	Crystal Structure Of Mutant S554d For Arfgap And An		1e-04
1ap7_A	168	P19-Ink4d From Mouse, Nmr, 20 Structures Length = 1		1e-04
3jue_A	368	Crystal Structure Of Arfgap And Ank Repeat Domain O		1e-04
1oy3_D	282	Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer		1e-04
1k3z_D	282	X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodi		1e-04
3deo_A	183	Structural Basis For Specific Substrate Recognition		1e-04
3ui2_A	244	Crystal Structure Of The Cpsrp54 Tail Bound To Cpsr		2e-04
2rfa_A	232	Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat		2e-04
3zkj_A	261	Crystal Structure Of Ankyrin Repeat And Socs Box-co		3e-04
2qc9_A	210	Mouse Notch 1 Ankyrin Repeat Intracellular Domain L		3e-04
4hbd_A	276	Crystal Structure Of Kank2 Ankyrin Repeats Length =		5e-04
3d9h_A	285	Crystal Structure Of The Splice Variant Of Human As		6e-04
2he0_A	253	Crystal Structure Of A Human Notch1 Ankyrin Domain		8e-04

>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or265. Length = 169

Iteration: 1
 Score = 99.8 bits (247), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/101 (52%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D RT LH AA  GH E+V++L+S       VNA D +G  P+H AA  G+  IV++L+SK
Sbjct: 36  DGRTPLHYAAKEGHKEIVKLLIS---KGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GADVN K+  GRT LHYAA +G  +IV+LLIS+GA +N+ D
Sbjct: 93  GADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVNTSD 133

>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Map Kinase Erk2 Length = 169

Iteration: 1
 Score = 98.2 bits (243), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/105 (49%), Positives = 71/105 (67%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T LH+AA  GHPE+VE+LL   +    VNA D +GW P+H AA  G++ IVE+L
Sbjct: 43  HDDQGSTPLHLAAWIGHPEIVEVLL---KHGADVNARDTDGWTPLHLAADNGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN ++  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 100 LKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVNAQDK 144

>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or264. Length = 169

Iteration: 1
 Score = 95.9 bits (237), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 51/101 (50%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D RT LH AA  GH EVV++L+S       VNA D +G  P+H AA  G+  +V++L+SK
Sbjct: 36  DGRTPLHHAAENGHKEVVKLLIS---KGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GADVN K+  GRT LH+AA  G  ++V+LLIS+GA +N+ D
Sbjct: 93  GADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSD 133

>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH+AA  GH E+VE+LL   ++   VNA D++G+ P+H AA  G++ IVE+L
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132

>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module. Length = 157

Iteration: 1
 Score = 95.5 bits (236), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH+AA  GH E+VE+LL   ++   VNA D++G+ P+H AA  G++ IVE+L
Sbjct: 31  KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 88  LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 132

>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin Length = 166

Iteration: 1
 Score = 95.1 bits (235), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/105 (48%), Positives = 73/105 (69%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH+AA  GH E+VE+LL   ++   VNA D++G+ P+H AA  G++ IVE+L
Sbjct: 43  KDKDGYTPLHLAAREGHLEIVEVLL---KAGADVNAKDKDGYTPLHLAAREGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN K+  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 100 LKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDK 144

>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or267. Length = 169

Iteration: 1
 Score = 95.1 bits (235), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 66/101 (65%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D RT LH AA  GH E+V++LLS        NA D +G  P+H AA  G+  IV++LLSK
Sbjct: 36  DGRTPLHYAAENGHKEIVKLLLS---KGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD N K+  GRT LHYAA  G  +IV+LL+S+GA  N+ D
Sbjct: 93  GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADPNTSD 133

>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein Length = 154

Iteration: 1
 Score = 94.4 bits (233), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 52/100 (52%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+AA+ GH E+VE+LL    +   VNAVD  G  P+H AAS+G++ IVE+LL  GA
Sbjct: 36  RTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGA 92
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           DVN K+  G T L+ AA  G L+IVE+L+  GA +N++DK
Sbjct: 93  DVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNAQDK 132

>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four Identical Consensus Repeats Length = 126

Iteration: 1
 Score = 94.0 bits (232), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 3/102 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL   E+   VNA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 93.2 bits (230), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 51/104 (49%), Positives = 71/104 (68%), Gaps = 3/104 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ++D  T LH+AAS GH E+VE+LL   ++   VNA D  G  P+H AA+ G++ IVE+LL
Sbjct: 44  DNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGITPLHLAAATGHLEIVEVLL 100
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN  ++ G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 101 KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNAQDK 144

>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By Darpin Inhibitors Length = 169

Iteration: 1
 Score = 92.8 bits (229), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 51/99 (51%), Positives = 69/99 (69%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN K+D G T LH AA++G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNAQDK 144

>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph (3')-Iiia In Complex With The Inhibitor Ar_3a Length = 169

Iteration: 1
 Score = 89.0 bits (219), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+  + GH E++E+LL   + A  VNA D+ GW P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLVVNNGHLEIIEVLL---KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDK 144

>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex) Length = 169

Iteration: 1
 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA+ GH E+VE+LL   +    VNA+D  G  P+H AA IG++ IVE+LL  GAD
Sbjct: 49  TPLHLAATYGHLEIVEVLL---KHGADVNAIDIXGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144

>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/99 (50%), Positives = 67/99 (67%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA+ GH E+VE+LL   +    VNA+D  G  P+H AA IG++ IVE+LL  GAD
Sbjct: 49  TPLHLAATYGHLEIVEVLL---KHGADVNAIDIMGSTPLHLAALIGHLEIVEVLLKHGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQDK 144

>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 106 VNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNAQDK 144

>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat Protein Length = 166

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA+D  G  P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAARVGHLEIVEVLL---KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNADDTIGSTPLHLAADTGHLEIVEVLLKYGADVNAQDK 144

>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex Length = 169

Iteration: 1
 Score = 87.8 bits (216), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  +T LH+AA  GH E+VE+LL   +    VNA D+ G  P+H AA  G++ IVE+L
Sbjct: 43  EDDSGKTPLHLAAIKGHLEIVEVLL---KHGADVNAADKMGDTPLHLAALYGHLEIVEVL 99
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 100 LKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQDK 144

>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat Protein (Darpin) Length = 169

Iteration: 1
 Score = 87.4 bits (215), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 50/100 (50%), Positives = 64/100 (64%), Gaps = 3/100 (3%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
            T LH+AA  GH E+VE+LL        VNA D  G  P+H AA  G++ IVE+LL  GA
Sbjct: 48  HTPLHLAAKTGHLEIVEVLLKYGAD---VNAWDNYGATPLHLAADNGHLEIVEVLLKHGA 104
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           DVN K+  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 105 DVNAKDYEGFTPLHLAAYDGHLEIVEVLLKYGADVNAQDK 144

>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Maltose Binding Protein Length = 169

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   +    V+A D  G+ P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAYSGHLEIVEVLL---KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G+L+IVE+L+  GA +N++DK
Sbjct: 106 VNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVNAQDK 144

>pdb|1UOH|A Chain A, Human Gankyrin Length = 226

Iteration: 1
 Score = 86.7 bits (213), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 94  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin Length = 227

Iteration: 1
 Score = 86.3 bits (212), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 38  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 94
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 95  GKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 137

>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In Complex With A Selective Darpin Length = 167

Iteration: 1
 Score = 86.3 bits (212), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   +    V+A D  G+ P+H AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAVSGHLEIVEVLL---KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 106 VNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDK 144

>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast Structural Genomics Consortium Target Or266. Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 48/101 (47%), Positives = 69/101 (68%), Gaps = 3/101 (2%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D +T LH+AA  GH EVV++LLS  + A+  NA D +G  P+H AA  G+  +V++LLS+
Sbjct: 36  DGKTPLHLAAENGHKEVVKLLLS--QGADP-NAKDSDGKTPLHLAAENGHKEVVKLLLSQ 92
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD N K+  G+T LH AA  G  ++V+LL+S+GA  N+ D
Sbjct: 93  GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNTSD 133

>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4 Length = 169

Iteration: 1
 Score = 85.9 bits (211), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 49/99 (49%), Positives = 65/99 (65%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNAVD  G  P+  AA  G++ IVE+LL  GAD
Sbjct: 49  TPLHLAAFNGHLEIVEVLL---KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 106 VNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144

>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6 Atpase Of The 26s Proteasome Length = 231

Iteration: 1
 Score = 85.5 bits (210), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGRDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked Site-Specifically, And Incoporated By Genetic Code Expansion Length = 231

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 50/103 (48%), Positives = 62/103 (60%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D RT LH A S GH E+VE LL +      VN  D+ GW+P+H AAS G   IV+ LL
Sbjct: 37  DQDSRTALHWACSAGHTEIVEFLLQLGVP---VNDKDDAGWSPLHIAASAGXDEIVKALL 93
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
            KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD
Sbjct: 94  VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKD 136

>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb: Plasticity Of The Interface Length = 169

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 48/99 (48%), Positives = 66/99 (66%), Gaps = 3/99 (3%)
Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LH+AA  GH E+VE+LL   ++   VNA D  G  P+H AA  G++ +VE+LL  GAD
Sbjct: 49  TPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           VN  +  G T LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 106 VNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDK 144

>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three Identical Consensus Repeats Length = 93

Iteration: 1
 Score = 85.1 bits (209), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL   E+   VNA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLL---EAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA 57
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity Complementary Protein-Protein Interface Length = 158

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 67/103 (65%), Gaps = 3/103 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +D+  T LH+AA+ G  E+VE+LL   ++   VNA D  G  P+H AA  G++ IVE+LL
Sbjct: 36  DDNGLTPLHLAAANGQLEIVEVLL---KNGADVNASDSAGITPLHLAAYDGHLEIVEVLL 92
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             GADVN  +  G T LH AA  G L+IVE+L+  GA +N++D
Sbjct: 93  KHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNAQD 135

>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat Protein In Complex With The Phosphorylated Map Kinase Erk2 Length = 136

Iteration: 1
 Score = 82.8 bits (203), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 44/94 (46%), Positives = 65/94 (69%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA+DE+G  P+H AA +G++ IVE+LL  GADVN ++
Sbjct: 21  AARAGQDDEVRILMA---NGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAED 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + G T LH AA +G L+IVE+L+  GA +N++DK
Sbjct: 78  NFGITPLHLAAIRGHLEIVEVLLKHGADVNAQDK 111

>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r Length = 136

Iteration: 1
 Score = 76.6 bits (187), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 62/94 (65%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN ++
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNARD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GRT LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s Length = 136

Iteration: 1
 Score = 76.6 bits (187), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GRT LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 78  SWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4 Length = 136

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 61/94 (64%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           A   G  + V IL++   +   VNA+D+ G  P+H AA  G++ IVE+LL  GADVN  +
Sbjct: 21  ATRAGQDDEVRILMA---NGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GRT LH AA+ G L+IVE+L+  GA +N++DK
Sbjct: 78  IWGRTPLHLAATVGHLEIVEVLLEYGADVNAQDK 111

>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA Length = 153

Iteration: 1
 Score = 75.1 bits (183), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 58/103 (56%), Gaps = 3/103 (2%)
Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           LH+AA  GH    E+LL    S +    VD     P+H AAS G+  IVE+LL  GADVN
Sbjct: 38  LHLAAQYGHFSTTEVLLRAGVSRDARTKVDR---TPLHMAASEGHANIVEVLLKHGADVN 94
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY 151
            K+    TALH+A      ++VELLI  GA ++++ K C   +
Sbjct: 95  AKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAF 137

>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex Length = 136

Iteration: 1
 Score = 72.8 bits (177), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 42/94 (44%), Positives = 59/94 (62%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D +G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAHD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 78  NDGSTPLHLAALFGHLEIVEVLLKHGADVNAQDK 111

>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein Gankyrin, An Interactor Of Rb And Cdk46 Length = 231

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With The Proteasome Subunit, Rpt3 Length = 228

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two Different Crystal Forms Length = 243

Iteration: 1
 Score = 72.4 bits (176), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/107 (35%), Positives = 57/107 (53%), Gaps = 2/107 (1%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D R  LH + S    E+   LLS  E+ N+ +  D+ GW P H A S+GN+ +V+ L
Sbjct: 32  KDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSL 91
Query: 101 LSKG--ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +    D+N   + G T LH A  K W ++ + LI  GA +  KDK
Sbjct: 92  YDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDK 138

>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure Length = 115

Iteration: 1
 Score = 71.6 bits (174), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 61/100 (61%), Gaps = 3/100 (3%)
Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D  T LH AA  GH E V+ LLS       VNA  ++G  P+H AA  G+  IV++LL+K
Sbjct: 8   DGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           GADVN ++  G T  H A   G  +IV+LL ++GA +N++
Sbjct: 65  GADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNAR 104

>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige Inhibitor Length = 135

Iteration: 1
 Score = 71.2 bits (173), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/94 (45%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL +   +   VNA D  G  P+H AA +G++ IVE+LL  GADVN   
Sbjct: 21  AARAGQDDEVRILTA---NGADVNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVNATG 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + GRT LH AA    L+IVE+L+  GA +N++DK
Sbjct: 78  NTGRTPLHLAAWADHLEIVEVLLKHGADVNAQDK 111

>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1) Length = 237

Iteration: 1
 Score = 60.8 bits (146), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 62/104 (59%), Gaps = 4/104 (3%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ++D RT L  AA   H E V+ L+   ++  +V+  D EG   +H AA  G+  +V+ LL
Sbjct: 41  SEDQRTPLMEAAENNHLEAVKYLI---KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL 97
Query: 102 SKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           S G  DVN ++DGG T + +A     + +V+LL+S+G+ IN +D
Sbjct: 98  SNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRD 141

>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar Affinity To Her2 Length = 136

Iteration: 1
 Score = 67.8 bits (164), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 58/94 (61%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA DE G  P++ A + G++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVD 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G T LH AA  G L+I E+L+  GA +N++DK
Sbjct: 78  AIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From Lactococcal Phage Tp901-1 Length = 136

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 41/94 (43%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D+ G  P+H AA   ++ IVE+LL  GADVN  +
Sbjct: 21  AARAGQDDEVRILMA---NGADVNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVNAID 77
Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G T LH  A  G L+IVE+L+  GA +N++DK
Sbjct: 78  AIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDK 111

>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker Length = 437

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 39/105 (37%), Positives = 54/105 (51%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +  DD+T LH AA  GH  +V++LL  + + N+       G  P+H AA  G+V  V  L
Sbjct: 76  KAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTA---GHTPLHIAAREGHVETVLAL 132
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L K A        G T LH AA  G +++ ELL+ R A  N+  K
Sbjct: 133 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 177

>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 183

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 40  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 99
Query: 129 IVELLISRGAKINSKD 144
           IV++L+  G  +N  D
Sbjct: 100 IVKMLLDCGVDVNEYD 115

>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human 3bp2 Length = 165

Iteration: 1
 Score = 63.5 bits (153), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 11  DKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDR--TLLHVAASCGHPEVVEILLSVD 68
           D+ L +AA+ GD  T               R+ + R  T LH AA      VVE LL   
Sbjct: 9   DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLL--- 62
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           +    V+A D+ G  P+H+A S G+  + E+L+  GA VN+ +    T LH AA+KG  +
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 122
Query: 129 IVELLISRGAKINSKDKACN 148
           I +LL+  GA    K++  N
Sbjct: 123 ICKLLLQHGADPTKKNRDGN 142

>pdb|3SO8|A Chain A, Crystal Structure Of Ankra Length = 162

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 22  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 81
Query: 129 IVELLISRGAKINSKD 144
           IV++L+  G  +N  D
Sbjct: 82  IVKMLLDCGVDVNEYD 97

>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In Complex With Peptide From Human Mcl1 Length = 167

Iteration: 1
 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 48/140 (34%), Positives = 70/140 (50%), Gaps = 8/140 (5%)
Query: 11  DKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDR--TLLHVAASCGHPEVVEILLSVD 68
           D+ L +AA+ GD  T               R+ + R  T LH AA      VVE LL   
Sbjct: 11  DRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRVSVVEYLL--- 64
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           +    V+A D+ G  P+H+A S G+  + E+L+  GA VN+ +    T LH AA+KG  +
Sbjct: 65  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYE 124
Query: 129 IVELLISRGAKINSKDKACN 148
           I +LL+  GA    K++  N
Sbjct: 125 ICKLLLQHGADPTKKNRDGN 144

>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo Form) Length = 175

Iteration: 1
 Score = 64.3 bits (155), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 8/150 (5%)
Query: 1   MDMDIDQTIKDKDLFKAAETGDSSTFXXXXXXXXXXXXXXRNDDDR--TLLHVAASCGHP 58
           M + +  +  D+ L +AA+ GD  T               R+ + R  T LH AA     
Sbjct: 3   MGISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNC---RDIEGRQSTPLHFAAGYNRV 59
Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL 118
            VVE LL   +    V+A D+ G  P+H+A S G+  + E+L+  GA VN+ +    T L
Sbjct: 60  SVVEYLL---QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPL 116
Query: 119 HYAASKGWLKIVELLISRGAKINSKDKACN 148
           H AA+KG  +I +LL+  GA    K++  N
Sbjct: 117 HEAAAKGKYEICKLLLQHGADPTKKNRDGN 146

>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Ankra2 Length = 167

Iteration: 1
 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 33/76 (43%), Positives = 45/76 (59%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           E  NV+N  DEEG+ P+  AA+ G + +VE LL  GAD  L   G  +AL  A SKG+  
Sbjct: 24  EQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTD 83
Query: 129 IVELLISRGAKINSKD 144
           IV++L+  G  +N  D
Sbjct: 84  IVKMLLDCGVDVNEYD 99

>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat Domain In Complex With Pinch1 Lim1 Domain Length = 179

Iteration: 1
 Score = 64.7 bits (156), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%)
Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
           +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ 
Sbjct: 9   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 68
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
           N G  T LH AAS G   IV+ L+   A IN+ ++  N
Sbjct: 69  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 106

>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex Length = 171

Iteration: 1
 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 54/98 (55%)
Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK 110
           +   C     V + L +D + N +N  D+ G++P+H A   G   +VEML+ +GA +N+ 
Sbjct: 4   IFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVM 63
Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
           N G  T LH AAS G   IV+ L+   A IN+ ++  N
Sbjct: 64  NRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNEHGN 101

>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And Its Functional Consequences Length = 137

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 40/101 (39%), Positives = 53/101 (52%), Gaps = 3/101 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N    TLLH+A+  G    VE LL      NV    D  GW P+H A + G++ +VE+LL
Sbjct: 7   NHRGETLLHIASIKGDIPSVEYLLQNGSDPNVK---DHAGWTPLHEACNHGHLKVVELLL 63
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              A VN       + LH AA  G + IV+LL+S GA  N+
Sbjct: 64  QHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNA 104

>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 269

Iteration: 1
 Score = 60.5 bits (145), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 41/105 (39%), Positives = 57/105 (54%), Gaps = 3/105 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           RN D    LH+A   GH +VV+ LL  D +A   N  D  G  P+  A S G+  +V +L
Sbjct: 115 RNADQAVPLHLACQQGHFQVVKCLL--DSNAKP-NKKDLSGNTPLIYACSGGHHELVALL 171
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA +N  N+ G TALH A  +  + +VELL+  GA +   +K
Sbjct: 172 LQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNK 216

>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex Length = 351

Iteration: 1
 Score = 60.1 bits (144), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 34/84 (40%), Positives = 48/84 (57%), Gaps = 1/84 (1%)
Query: 62  EILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           E L+++    NV  +A D     P+H AA    V IV++LL  GADV+ K+ GG   LH 
Sbjct: 38  EKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHN 97
Query: 121 AASKGWLKIVELLISRGAKINSKD 144
           A S G  ++ ELL+  GA +N+ D
Sbjct: 98  ACSYGHYEVTELLLKHGACVNAMD 121

>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease Length = 285

Iteration: 1
 Score = 59.3 bits (142), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 50  HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
           H+       E V+++  + E    VN  +EEG W P+H+A  +    IVE+LL  GAD  
Sbjct: 7   HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD----------------KACNFLYQ 152
           L+   G T    AA  G +K+++L +S+GA +N  D                KA  FLY+
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive Signaling State Length = 337

Iteration: 1
 Score = 58.5 bits (140), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 17/120 (14%)
Query: 50  HVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHSAASIGNVTIVEMLLSKGADVN 108
           H+       E V+++  + E    VN  +EEG W P+H+A  +    IVE+LL  GAD  
Sbjct: 27  HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 86
Query: 109 LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD----------------KACNFLYQ 152
           L+   G T    AA  G +K+++L +S+GA +N  D                KA  FLY+
Sbjct: 87  LRKKNGATPFILAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 146

>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A Unique Member Of The Ikappab Protein Family Length = 241

Iteration: 1
 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 40/109 (36%), Positives = 63/109 (57%), Gaps = 6/109 (5%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
           RN D  T LHVA +    E V++LL   E    ++AVD + G +P+  A    ++++V++
Sbjct: 112 RNYDGLTALHVAVNTECQETVQLLL---ERGADIDAVDIKSGRSPLIHAVENNSLSMVQL 168
Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
           LL  GA+VN +   G +ALH A+ +G L +V  L+  GA  +S  K C+
Sbjct: 169 LLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGA--DSSLKNCH 215

>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGQLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACNF 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC+ 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of Designed Ankyrin Repeat Proteins With A Redesigned C- Capping Module Length = 91

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 3/82 (3%)
Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
           AA  G  + V IL++   +   VNA D++G+ P+H AA  G++ IVE+LL  GADVN ++
Sbjct: 9   AARAGQDDEVRILMA---NGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQD 65
Query: 112 DGGRTALHYAASKGWLKIVELL 133
             G+TA   +   G   + E+L
Sbjct: 66  KFGKTAFDISIDNGNEDLAEIL 87

>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n) Length = 168

Iteration: 1
 Score = 55.5 bits (132), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLENQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACNF 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC+ 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex Length = 236

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 41  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 97
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++  CN
Sbjct: 98  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-CN 150

>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex Length = 213

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 38/114 (33%), Positives = 55/114 (48%), Gaps = 10/114 (8%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+  +T LH+A     PE+ E LL       +    D  G  P+H A   G +  V +L
Sbjct: 38  QNNLQQTPLHLAVITNQPEIAEALLGAGCDPELR---DFRGNTPLHLACEQGCLASVGVL 94
Query: 101 LSKGADVNLK------NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
                  +L       N  G T LH A+  G+L IVELL+S GA +N+++  CN
Sbjct: 95  TQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADVNAQEP-CN 147

>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures Length = 168

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACNF 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC+ 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6) Length = 162

Iteration: 1
 Score = 54.7 bits (130), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 57/109 (52%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G+A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGFAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACNF 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC+ 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a Resolution Length = 239

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ND+  T LH A   GH E+V+ L+    +   VNA D +GW P+H AAS  NV + + L+
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
             GA V
Sbjct: 124 ESGAAV 129

>pdb|1YCS|B Chain B, P53-53bp2 Complex Length = 239

Iteration: 1
 Score = 54.3 bits (129), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 28/66 (42%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           ND+  T LH A   GH E+V+ L+    +   VNA D +GW P+H AAS  NV + + L+
Sbjct: 67  NDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASCNNVQVCKFLV 123
Query: 102 SKGADV 107
             GA V
Sbjct: 124 ESGAAV 129

>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And The Myosin Phosphatase Targeting Subunit 1 (mypt1) Length = 299

Iteration: 1
 Score = 53.9 bits (128), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 1/90 (1%)
Query: 53  ASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           A+C   +  E+L  ++  A++ N  + +G   +H A    NV +V+ L+  GA++N  ++
Sbjct: 46  AACSSGDTEEVLRLLERGADI-NYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104
Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINS 142
            G   LH AAS G+L I E LIS+GA + +
Sbjct: 105 EGWIPLHAAASCGYLDIAEYLISQGAHVGA 134

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 53.5 bits (127), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 3/73 (4%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           R  LH AA CG  E++E LL        +NA D+    P+ SA   G+V+ V++LLSKGA
Sbjct: 36  RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 92
Query: 106 DVNLKNDGGRTAL 118
           D  +K   G TAL
Sbjct: 93  DKTVKGPDGLTAL 105

>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures Length = 118

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK
Sbjct: 13  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 66

>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c Length = 168

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 56/109 (51%), Gaps = 9/109 (8%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT L V    G+PE+   LL    + ++    D  G A IH AA  G +  ++ LL   A
Sbjct: 39  RTALQVM-KLGNPEIARRLLLRGANPDLK---DRTGNAVIHDAARAGFLDTLQTLLEFQA 94
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISR-----GAKINSKDKACNF 149
           DVN++++ G   LH AA +G L++VE L+       G + +  D AC+ 
Sbjct: 95  DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDL 143

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 3/73 (4%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           R  LH AA CG  E++E LL        +NA D+    P+ SA   G+V+ V++LLSKGA
Sbjct: 41  RKPLHYAADCGQLEILEFLLL---KGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGA 97
Query: 106 DVNLKNDGGRTAL 118
           D  +K   G TA 
Sbjct: 98  DKTVKGPDGLTAF 110

>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With V-1 Length = 123

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/54 (48%), Positives = 37/54 (68%)
Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ +GA IN+ DK
Sbjct: 18  GDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDK 71

>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 92

Iteration: 1
 Score = 49.7 bits (117), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA +N++DK
Sbjct: 13  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVNAQDK 70

>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting Protein 14 Length = 240

Iteration: 1
 Score = 48.5 bits (114), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 54/104 (51%), Gaps = 4/104 (3%)
Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D + T LH A   GH  +V  L+      +++   D EG + IH AA  G+ +IV  L++
Sbjct: 74  DLNSTPLHWATRQGHLSMVVQLMKYGADPSLI---DGEGCSCIHLAAQFGHTSIVAYLIA 130
Query: 103 KGADVNLKNDGGRTALHYAASKGW-LKIVELLISRGAKINSKDK 145
           KG DV++ +  G T L +AA +   +    LL++    +N  DK
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKD 144
           LL+ R   IN  D
Sbjct: 87  LLLERDVDINIYD 99

>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The Ankyrin Repeat Domains Of Human Rfxank Length = 172

Iteration: 1
 Score = 48.1 bits (113), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/73 (36%), Positives = 40/73 (54%)
Query: 72  NVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           N+VN  DE G+ P+  A++ G +  V  LL  GAD ++      +AL  A++ G+  IV 
Sbjct: 27  NLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVG 86
Query: 132 LLISRGAKINSKD 144
           LL+ R   IN  D
Sbjct: 87  LLLERDVDINIYD 99

>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch Receptor Length = 239

Iteration: 1
 Score = 47.4 bits (111), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 2/99 (2%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH A +     V +ILL     A  +NA   +G  P+  AA +    +VE L++  A
Sbjct: 85  RTPLHAAVAADAMGVFQILLR--NRATNLNARMHDGTTPLILAARLAIEGMVEDLITADA 142
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           D+N  ++ G+TALH+AA+    + V +L+   A  +++D
Sbjct: 143 DINAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQD 181

>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor Length = 222

Iteration: 1
 Score = 47.0 bits (110), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVEL 132
           VN +D+ G   ++ A   G+  IVE L ++   ++N +N  G TALH AA KG+  IV+L
Sbjct: 99  VNGLDKAGSTALYWACHGGHKDIVEXLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQL 158
Query: 133 LISRGAKINSKD 144
           L+++GA+ + ++
Sbjct: 159 LLAKGARTDLRN 170

>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain Fold Length = 110

Iteration: 1
 Score = 46.6 bits (109), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           AA  G    V +L++ GADV  K+  G T LH AA  G L++V+LL+  GA + ++DK
Sbjct: 31  AARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 3/104 (2%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+  +RT L VA   G    ++ L+   E+ + +   D EG   +  A     + I E L
Sbjct: 31  RDSYNRTPLMVACMLGMENAIDKLV---ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKL 87
Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           LSKG++VN K+  G+T L ++   G+ ++   L+  GA +N ++
Sbjct: 88  LSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRN 131

>pdb|3KEA|A Chain A, Structure Function Studies Of Vaccinia Virus Host-Range Protein K1 Reveal A Novel Ankyrin Repeat Interaction Surface For K1s Function Length = 285

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/61 (34%), Positives = 36/61 (59%)
Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
           E   P+H AA++ +  IV++LL  G D +  +D G TAL+YA   G  + V+L + +  +
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNXQTVKLFVKKNWR 120
Query: 140 I 140
           +
Sbjct: 121 L 121

>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           LL  A      +V EIL    ++   V+ VD EG  P++ A    ++ I + L+ +GAD+
Sbjct: 9   LLEAANQRDTKKVKEIL---QDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADI 65
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLI 134
           NL+N    +   YA ++G  +I+  ++
Sbjct: 66  NLQNSISDSPYLYAGAQGRTEILAYML 92

>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d Length = 156

Iteration: 1
 Score = 42.7 bits (99), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           N  D  G +P+H AA  G +  +++L+  GADVN+ +  G   +H A  +G   +V  L
Sbjct: 62  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 120

>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From The Structures Cdk6-P19ink4d Inhibitor Complex Length = 166

Iteration: 1
 Score = 42.7 bits (99), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 32/59 (54%)
Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           N  D  G +P+H AA  G +  +++L+  GADVN+ +  G   +H A  +G   +V  L
Sbjct: 68  NVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFL 126

>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp Length = 229

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 34/93 (36%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADV 107
           LL  AA  G  EVV+  +   +  N  +  +EEG   +H+A    N +IV+ L++ GA+V
Sbjct: 24  LLLDAALTGELEVVQQAV---KEMNDPSQPNEEGITALHNAICGANYSIVDFLITAGANV 80
Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           N  +  G T LH AAS     I   L+  GA I
Sbjct: 81  NSPDSHGWTPLHCAASCNDTVICMALVQHGAAI 113

>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused With Integrin Beta1 Peptide Length = 390

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56  GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
           GHP  +  +         VN V+  ++   P+  A +  ++   E LL  GA+VN  +  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GR  LH+A   G   +  L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298

>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary Complex Bound To Dna Length = 373

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 41/66 (62%), Gaps = 1/66 (1%)
Query: 80  EGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           +G   +H AA + N  IV+ L+  KG++ + +++ G+T +  AA +G +++V  LI +GA
Sbjct: 278 KGRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGA 337
Query: 139 KINSKD 144
            + + D
Sbjct: 338 SVEAVD 343

>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX Length = 166

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           G P V   LL    S NV +A    G +P+H AA  G +  +++L+  GADVN  +  G 
Sbjct: 52  GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 108
Query: 116 TALHYAASKGWLKIVELL 133
             +H A  +G   +V  L
Sbjct: 109 LPIHLAIREGHSSVVSFL 126

>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56  GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
           GHP  +  +         VN V+  ++   P+  A +  ++   E LL  GA+VN  +  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GR  LH+A   G   +  L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298

>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures Length = 168

Iteration: 1
 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
           G P V   LL    S NV +A    G +P+H AA  G +  +++L+  GADVN  +  G 
Sbjct: 54  GSPAVALELLKQGASPNVQDA---SGTSPVHDAARTGFLDTLKVLVEHGADVNALDSTGS 110
Query: 116 TALHYAASKGWLKIVELL 133
             +H A  +G   +V  L
Sbjct: 111 LPIHLAIREGHSSVVSFL 128

>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1 Length = 368

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 56  GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
           GHP  +  +         VN V+  ++   P+  A +  ++   E LL  GA+VN  +  
Sbjct: 208 GHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSA 267
Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GR  LH+A   G   +  L + RGA + ++D
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGARD 298

>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LHVA      E+V +L   D  A++       G  P+H A      +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
             GAD   +  GGRT L  A  +    +  LL + GA 
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer Complex Length = 282

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LHVA      E+V +L   D  A++       G  P+H A      +++E+LL
Sbjct: 155 NYDGHTPLHVAVIHKDAEMVRLL--RDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLL 212
Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
             GAD   +  GGRT L  A  +    +  LL + GA 
Sbjct: 213 KAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAP 250

>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The Chloroplast Signal Recognition Particle Protein Cpsrp43 Length = 183

Iteration: 1
 Score = 42.0 bits (97), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
           V+AVDE G   +   A +G+   V +L   GAD++ ++  GG TALH AA     ++VE 
Sbjct: 69  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 128
Query: 133 LISRGAKINSKDK 145
           L+  GA I  +D+
Sbjct: 129 LVELGADIEVEDE 141

>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43 Length = 244

Iteration: 1
 Score = 41.6 bits (96), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVEL 132
           V+AVDE G   +   A +G+   V +L   GAD++ ++  GG TALH AA     ++VE 
Sbjct: 70  VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEA 129
Query: 133 LISRGAKINSKDK 145
           L+  GA I  +D+
Sbjct: 130 LVELGADIEVEDE 142

>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain Length = 232

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 51/123 (41%), Gaps = 15/123 (12%)
Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE--EGWAPIHSAASIGNVTIVE 98
           R     T LH+AA   + E   +L+             E  EG   +H A    NV +V 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92
Query: 99  MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            LL++GA V+ +  G             G   L +AA  G  +IV LLI  GA I ++D 
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152
Query: 146 ACN 148
             N
Sbjct: 153 LGN 155

>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs Box-containing Protein 9 (asb9) In Complex With Elonginb And Elonginc Length = 261

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           W+P+H AA  G+   +  L+S+G  VN+      + LH A   G L  V++L+  GA++N
Sbjct: 4   WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 63

>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain Length = 210

Iteration: 1
 Score = 40.8 bits (94), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 36/108 (33%), Positives = 57/108 (52%), Gaps = 5/108 (4%)
Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH A S     V +ILL     A  ++A   +G  P+  AA +    ++E L++  A
Sbjct: 56  RTPLHAAVSADAQGVFQILLR--NRATDLDARMHDGTTPLILAARLALEGMLEDLINSHA 113
Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAK---INSKDKACNFL 150
           DVN  +D G++ALH+AA+   +    +L+  GA     N+K++   FL
Sbjct: 114 DVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNKEETPLFL 161

>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats Length = 276

Iteration: 1
 Score = 40.0 bits (92), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 40/75 (53%)
Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           +E +L +    N+     + G   +  A S G V +V+ LL+  ADVN+++D G TAL  
Sbjct: 163 IETVLQLFRLGNINAKASQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMC 222
Query: 121 AASKGWLKIVELLIS 135
           A   G  +I  LL++
Sbjct: 223 ACEHGHKEIAGLLLA 237

>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9 (Hasb9-2), An Ankyrin Repeat Protein Length = 285

Iteration: 1
 Score = 40.0 bits (92), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           W+P+H AA  G+   +  L+S+G  VN+      + LH A   G L  V++L+  GA++N
Sbjct: 60  WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVN 119

>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant Length = 253

Iteration: 1
 Score = 39.3 bits (90), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 35/70 (50%)
Query: 69  ESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLK 128
           + A++ N  D  G   +H AA+       + LL   AD N++++ GRT LH A S     
Sbjct: 45  QGASLHNQTDRTGATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQG 104
Query: 129 IVELLISRGA 138
           + ++LI   A
Sbjct: 105 VFQILIRNRA 114

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	152
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-42
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	9e-41
3v30_A	172	DNA-binding protein rfxank; structural genomics co	2e-22
3v30_A	172	DNA-binding protein rfxank; structural genomics co	6e-10
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-42
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-40
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	5e-33
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	1e-24
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	6e-10
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	7e-42
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-41
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	2e-39
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	8e-42
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	1e-27
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	3e-13
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-41
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-35
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	1e-15
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	4e-41
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-39
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	5e-33
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	5e-41
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	3e-37
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-40
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-39
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	7e-34
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	4e-28
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	9e-15
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	1e-04
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	1e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	3e-40
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-39
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	2e-26
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	6e-11
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	2e-40
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	8e-36
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	1e-33
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	3e-20
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	5e-10
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	5e-40
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	3e-38
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	1e-34
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	8e-25
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	6e-40
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	2e-39
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-36
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	4e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	7e-40
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	2e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	3e-33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	6e-05
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	7e-40
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	4e-32
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	3e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-39
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	5e-37
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	2e-34
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	7e-28
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	1e-15
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-39
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	1e-34
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	6e-27
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-39
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	9e-36
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	3e-35
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	2e-22
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-16
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	1e-08
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	8e-39
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-38
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-37
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-35
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	2e-34
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	1e-31
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	7e-04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	1e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-38
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-35
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	2e-34
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	3e-34
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	1e-38
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-36
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	2e-31
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	8e-30
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-38
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	1e-36
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-35
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	2e-27
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	3e-22
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	5e-09
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-38
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-36
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	6e-34
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	2e-32
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	9e-26
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	3e-18
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-38
3hra_A	201	Ankyrin repeat family protein; structural protein;	2e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-35
3hra_A	201	Ankyrin repeat family protein; structural protein;	3e-32
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	2e-38
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	1e-36
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	5e-35
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-38
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	2e-37
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	4e-30
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	3e-29
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	5e-28
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	2e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-37
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	1e-36
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-33
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	4e-22
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	6e-16
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	6e-38
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-33
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	3e-28
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	1e-16
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	8e-38
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-37
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-36
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	4e-34
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	1e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-30
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	2e-22
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	9e-38
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	1e-37
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	4e-36
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	2e-32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	7e-29
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	3e-37
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	1e-27
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	3e-37
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	6e-36
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	8e-32
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	5e-22
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-36
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	1e-32
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	2e-27
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	5e-24
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-36
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	2e-33
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	3e-28
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	1e-25
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	7e-18
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	2e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-36
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	6e-24
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	3e-23
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	8e-36
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	2e-34
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	1e-33
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-19
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	3e-13
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	9e-36
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	7e-23
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-35
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	4e-34
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	2e-33
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	3e-30
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	1e-29
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	8e-18
2rfa_A	232	Transient receptor potential cation channel subfa	1e-35
2rfa_A	232	Transient receptor potential cation channel subfa	1e-32
2rfa_A	232	Transient receptor potential cation channel subfa	2e-32
2rfa_A	232	Transient receptor potential cation channel subfa	6e-31
2rfa_A	232	Transient receptor potential cation channel subfa	4e-14
2rfa_A	232	Transient receptor potential cation channel subfa	1e-07
2rfa_A	232	Transient receptor potential cation channel subfa	5e-04
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	5e-35
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	4e-34
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	2e-32
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	9e-31
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-27
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	1e-23
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	7e-15
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	6e-35
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-31
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-28
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-17
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	1e-16
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	3e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	7e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	9e-34
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	1e-31
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	4e-29
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	8e-24
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	6e-12
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	4e-34
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-27
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	2e-23
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	5e-22
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-10
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	1e-09
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	2e-31
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	6e-28
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	3e-10
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-30
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	4e-28
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	1e-05
2etb_A	256	Transient receptor potential cation channel subfam	3e-29
2etb_A	256	Transient receptor potential cation channel subfam	4e-28
2etb_A	256	Transient receptor potential cation channel subfam	6e-21
3jxi_A	260	Vanilloid receptor-related osmotically activated p	5e-28
3jxi_A	260	Vanilloid receptor-related osmotically activated p	1e-26
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-22
3jxi_A	260	Vanilloid receptor-related osmotically activated p	2e-21
2pnn_A	273	Transient receptor potential cation channel subfa	2e-27
2pnn_A	273	Transient receptor potential cation channel subfa	6e-24
2pnn_A	273	Transient receptor potential cation channel subfa	8e-23
2pnn_A	273	Transient receptor potential cation channel subfa	2e-16
2pnn_A	273	Transient receptor potential cation channel subfa	4e-12
2pnn_A	273	Transient receptor potential cation channel subfa	6e-06
2pnn_A	273	Transient receptor potential cation channel subfa	6e-05
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	8e-22
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-19
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	3e-18
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	4e-04
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	3e-19
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	6e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	4e-17
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	8e-13
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	3e-12
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	7e-07
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	5e-06
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	1e-16
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	2e-15
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	1e-12
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	2e-11
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	4e-09

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  137 bits (348), Expect = 2e-42
 Identities = 32/101 (31%), Positives = 50/101 (49%), Gaps = 2/101 (1%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           D   +H  A+ G  + ++  L      N+VN  DE G+ P+  A++ G +  V  LL  G
Sbjct: 2   DSLSIHQLAAQGELDQLKEHLRKG--DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWG 59

Query: 105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           AD ++      +AL  A++ G+  IV LL+ R   IN  D 
Sbjct: 60  ADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIYDW 100

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  134 bits (339), Expect = 6e-41
 Identities = 27/105 (25%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  + L +A++ G+ ++V +LL  D   ++ N  D  G  P+  A    +V  VE L
Sbjct: 65  LAKERESALSLASTGGYTDIVGLLLERD--VDI-NIYDWNGGTPLLYAVRGNHVKCVEAL 121

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L++GAD+  + D G T +  A + G+ K+ +++ +   K+   + 
Sbjct: 122 LARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNL 166

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score =  133 bits (337), Expect = 9e-41
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ++   T L  A++ G  E V  LL     A+  + + +E  + +  A++ G   IV +L
Sbjct: 32  PDERGFTPLIWASAFGEIETVRFLLEWG--ADP-HILAKERESALSLASTGGYTDIVGLL 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L +  D+N+ +  G T L YA     +K VE L++RGA + ++  
Sbjct: 89  LERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEAD 133

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 86.3 bits (215), Expect = 2e-22
 Identities = 14/76 (18%), Positives = 31/76 (40%), Gaps = 3/76 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T L  A    H + VE LL+    A++     + G+ P+  A ++G   + +++
Sbjct: 98  YDWNGGTPLLYAVRGNHVKCVEALLARG--ADL-TTEADSGYTPMDLAVALGYRKVQQVI 154

Query: 101 LSKGADVNLKNDGGRT 116
            +    +   N     
Sbjct: 155 ENHILKLFQSNLVPAD 170

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A Length = 172

 Score = 53.6 bits (130), Expect = 6e-10
 Identities = 8/34 (23%), Positives = 18/34 (52%), Gaps = 1/34 (2%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGA-KINSKDK 145
           G   ++H  A++G L  ++  + +G   +N  D+
Sbjct: 1   GDSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDE 34

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  136 bits (345), Expect = 6e-42
 Identities = 39/104 (37%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +    L  AA  G  E V+ L +V +S N    ++     P+H AA    V++VE LL
Sbjct: 5   NSEADRQLLEAAKAGDVETVKKLCTV-QSVNC-RDIEGRQSTPLHFAAGYNRVSVVEYLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADV+ K+ GG   LH A S G  ++ ELL+  GA +N  D 
Sbjct: 63  QHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAVVNVADL 106

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  132 bits (336), Expect = 1e-40
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LH AA      VVE LL     A+V +A D+ G  P+H+A S G+  + E+L
Sbjct: 38  IEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADV-HAKDKGGLVPLHNACSYGHYEVAELL 94

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  GA VN+ +    T LH AA+KG  +I +LL+  GA    K++
Sbjct: 95  VKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNR 139

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score =  113 bits (285), Expect = 5e-33
 Identities = 35/98 (35%), Positives = 45/98 (45%), Gaps = 4/98 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++      LH A S GH EV E+L+     A V N  D   + P+H AA+ G   I ++L
Sbjct: 71  KDKGGLVPLHNACSYGHYEVAELLVKHG--AVV-NVADLWKFTPLHEAAAKGKYEICKLL 127

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L  GAD   KN  G T L      G   I +LL    A
Sbjct: 128 LQHGADPTKKNRDGNTPLDLVK-DGDTDIQDLLRGDAA 164

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 92.1 bits (230), Expect = 1e-24
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            + E    +  AA  G+V  V+ L +    +         T LH+AA    + +VE L+ 
Sbjct: 4   GNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQ 63

Query: 136 RGAKINSKDK 145
            GA +++KDK
Sbjct: 64  HGADVHAKDK 73

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S* Length = 165

 Score = 53.5 bits (130), Expect = 6e-10
 Identities = 9/43 (20%), Positives = 15/43 (34%), Gaps = 4/43 (9%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDK 145
           GA  N +       L  AA  G ++ V+ L +         + 
Sbjct: 1   GAMGNSE---ADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEG 40

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  136 bits (345), Expect = 7e-42
 Identities = 33/104 (31%), Positives = 54/104 (51%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +    +      G+   V + L    + N +N  D+ G++P+H A   G   +VEML+
Sbjct: 2   SPEFMDDIFTQCREGNAVAVRLWLD--NTENDLNQGDDHGFSPLHWACREGRSAVVEMLI 59

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +GA +N+ N G  T LH AAS G   IV+ L+   A IN+ ++
Sbjct: 60  MRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAVNE 103

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  135 bits (342), Expect = 2e-41
 Identities = 36/105 (34%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   + LH A   G   VVE+L+     A + N ++     P+H AAS G+  IV+ L
Sbjct: 35  GDDHGFSPLHWACREGRSAVVEMLIMRG--ARI-NVMNRGDDTPLHLAASHGHRDIVQKL 91

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   AD+N  N+ G   LHYA   G  ++ E L++ GA ++  +K
Sbjct: 92  LQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNK 136

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A Length = 179

 Score =  130 bits (330), Expect = 2e-39
 Identities = 35/109 (32%), Positives = 52/109 (47%), Gaps = 3/109 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N  D T LH+AAS GH ++V+ LL     A++ NAV+E G  P+H A   G   + E L
Sbjct: 68  MNRGDDTPLHLAASHGHRDIVQKLLQYK--ADI-NAVNEHGNVPLHYACFWGQDQVAEDL 124

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNF 149
           ++ GA V++ N  G   +  A +     + E     G  +N       F
Sbjct: 125 VANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTF 173

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score =  134 bits (340), Expect = 8e-42
 Identities = 45/104 (43%), Positives = 64/104 (61%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + D  T LH AA  GH E V+ LLS    A+V NA  ++G  P+H AA  G+  IV++LL
Sbjct: 6   SKDGNTPLHNAAKNGHAEEVKKLLSKG--ADV-NARSKDGNTPLHLAAKNGHAEIVKLLL 62

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +KGADVN ++  G T  H A   G  +IV+LL ++GA +N++  
Sbjct: 63  AKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAKGADVNARSW 106

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 98.2 bits (246), Expect = 1e-27
 Identities = 33/80 (41%), Positives = 49/80 (61%), Gaps = 3/80 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R+ D  T LH+AA  GH E+V++LL+    A+V NA  ++G  P H A   G+  IV++L
Sbjct: 38  RSKDGNTPLHLAAKNGHAEIVKLLLAKG--ADV-NARSKDGNTPEHLAKKNGHHEIVKLL 94

Query: 101 LSKGADVNLKNDGGRTALHY 120
            +KGADVN ++ G     H+
Sbjct: 95  DAKGADVNARSWGSSHHHHH 114

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli} Length = 115

 Score = 61.2 bits (150), Expect = 3e-13
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G      +  G T LH AA  G  + V+ L+S+GA +N++ K
Sbjct: 1   GHMWG--SKDGNTPLHNAAKNGHAEEVKKLLSKGADVNARSK 40

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  134 bits (340), Expect = 1e-41
 Identities = 39/105 (37%), Positives = 55/105 (52%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    TLLH+A+  G    VE LL     ++  N  D  GW P+H A + G++ +VE+L
Sbjct: 6   TNHRGETLLHIASIKGDIPSVEYLLQNG--SDP-NVKDHAGWTPLHEACNHGHLKVVELL 62

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   A VN       + LH AA  G + IV+LL+S GA  N+ + 
Sbjct: 63  LQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSYGASRNAVNI 107

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score =  119 bits (301), Expect = 1e-35
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    T LH A + GH +VVE+LL     A V N    +  +P+H AA  G+V IV++L
Sbjct: 39  KDHAGWTPLHEACNHGHLKVVELLLQHK--ALV-NTTGYQNDSPLHDAAKNGHVDIVKLL 95

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
           LS GA  N  N  G   + Y   +    ++ L     +   S
Sbjct: 96  LSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSSAS 137

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1 Length = 137

 Score = 67.8 bits (167), Expect = 1e-15
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
           G D    N  G T LH A+ KG +  VE L+  G+  N KD A
Sbjct: 1   GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQNGSDPNVKDHA 42

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  133 bits (338), Expect = 4e-41
 Identities = 40/104 (38%), Positives = 58/104 (55%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    + LH+AA  GH    E+LL      +  +A  +    P+H AAS G+  IVE+LL
Sbjct: 31  DWLGTSPLHLAAQYGHFSTTEVLLRAG--VSR-DARTKVDRTPLHMAASEGHANIVEVLL 87

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN K+    TALH+A      ++VELLI  GA ++++ K
Sbjct: 88  KHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSK 131

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  128 bits (324), Expect = 5e-39
 Identities = 37/102 (36%), Positives = 52/102 (50%), Gaps = 4/102 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A      D  G +P+H AA  G+ +  E+LL  
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANG--APF--TTDWLGTSPLHLAAQYGHFSTTEVLLRA 56

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G   + +    RT LH AAS+G   IVE+L+  GA +N+KD 
Sbjct: 57  GVSRDARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDM 98

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1 Length = 153

 Score =  112 bits (284), Expect = 5e-33
 Identities = 34/93 (36%), Positives = 50/93 (53%), Gaps = 3/93 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R   DRT LH+AAS GH  +VE+LL     A+V NA D      +H A    +  +VE+L
Sbjct: 63  RTKVDRTPLHMAASEGHANIVEVLLKHG--ADV-NAKDMLKMTALHWATEHNHQEVVELL 119

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  GADV+ ++   +TA   +   G   + E+L
Sbjct: 120 IKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  132 bits (335), Expect = 5e-41
 Identities = 51/102 (50%), Positives = 70/102 (68%), Gaps = 3/102 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEAG--ADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GADVN K+  GRT LH AA  G L++V+LL+  GA +N+KDK
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDK 99

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1 Length = 126

 Score =  122 bits (310), Expect = 3e-37
 Identities = 47/98 (47%), Positives = 66/98 (67%), Gaps = 3/98 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++L
Sbjct: 31  KDKNGRTPLHLAARNGHLEVVKLLLEAG--ADV-NAKDKNGRTPLHLAARNGHLEVVKLL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L  GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 88  LEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 125

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  133 bits (337), Expect = 1e-40
 Identities = 50/105 (47%), Positives = 66/105 (62%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+VE+LL     A+V NAVD  G  P+  AA  G++ IVE+L
Sbjct: 43  EDASGWTPLHLAAFNGHLEIVEVLLKNG--ADV-NAVDHAGMTPLRLAALFGHLEIVEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GADVN  +  G T LH AA  G L+IVE+L+  GA +N++DK
Sbjct: 100 LKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDK 144

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  130 bits (329), Expect = 1e-39
 Identities = 45/104 (43%), Positives = 59/104 (56%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+V NA D  GW P+H AA  G++ IVE+LL
Sbjct: 11  GSDLGKKLLEAARAGRDDEVRILMANG--ADV-NAEDASGWTPLHLAAFNGHLEIVEVLL 67

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN  +  G T L  AA  G L+IVE+L+  GA +N+ D 
Sbjct: 68  KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNANDM 111

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  115 bits (292), Expect = 7e-34
 Identities = 39/95 (41%), Positives = 54/95 (56%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T L +AA  GH E+VE+LL     A+V NA D EG  P+H AA  G++ IVE+L
Sbjct: 76  VDHAGMTPLRLAALFGHLEIVEVLLKNG--ADV-NANDMEGHTPLHLAAMFGHLEIVEVL 132

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GADVN ++  G+TA   +   G   + E+L  
Sbjct: 133 LKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQK 167

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score =  100 bits (253), Expect = 4e-28
 Identities = 26/75 (34%), Positives = 41/75 (54%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN ++  G T LH AA  G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIV 63

Query: 131 ELLISRGAKINSKDK 145
           E+L+  GA +N+ D 
Sbjct: 64  EVLLKNGADVNAVDH 78

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 66.2 bits (163), Expect = 9e-15
 Identities = 22/63 (34%), Positives = 32/63 (50%), Gaps = 3/63 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T LH+AA  GH E+VE+LL     A+V NA D+ G      +   GN  + E+L
Sbjct: 109 NDMEGHTPLHLAAMFGHLEIVEVLLKNG--ADV-NAQDKFGKTAFDISIDNGNEDLAEIL 165

Query: 101 LSK 103
              
Sbjct: 166 QKL 168

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C* Length = 169

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 5/28 (17%), Positives = 15/28 (53%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVD 68
           ++   +T   ++   G+ ++ EIL  ++
Sbjct: 142 QDKFGKTAFDISIDNGNEDLAEILQKLN 169

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  132 bits (336), Expect = 1e-40
 Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +++  T L  AA+ G   VVE LL     A+    + +   + +  A S G   IV+ML
Sbjct: 32  TDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADP-QLLGKGRESALSLACSKGYTDIVKML 88

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  G DVN  +  G T L YA     +K V++L+  GA    +  
Sbjct: 89  LDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETD 133

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  131 bits (333), Expect = 3e-40
 Identities = 28/105 (26%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 + L +A S G+ ++V++LL      +V N  D  G  P+  A    +V  V+ML
Sbjct: 65  LGKGRESALSLACSKGYTDIVKMLLDCG--VDV-NEYDWNGGTPLLYAVHGNHVKCVKML 121

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GAD  ++ D G  ++  A + G+  + +++ S   K+    K
Sbjct: 122 LESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLLQNIK 166

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score =  130 bits (329), Expect = 2e-39
 Identities = 33/100 (33%), Positives = 50/100 (50%), Gaps = 3/100 (3%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
              +H  A+ G    +   +  +    + N  DEEG+ P+  AA+ G + +VE LL  GA
Sbjct: 4   SLSVHQLAAQGEMLYLATRIEQE--NVI-NHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           D  L   G  +AL  A SKG+  IV++L+  G  +N  D 
Sbjct: 61  DPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDW 100

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 96.7 bits (242), Expect = 2e-26
 Identities = 16/65 (24%), Positives = 30/65 (46%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
               +H  A+ G +  +   + +   +N  ++ G T L +AA+ G + +VE L+  GA  
Sbjct: 3   NSLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADP 62

Query: 141 NSKDK 145
               K
Sbjct: 63  QLLGK 67

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A Length = 167

 Score = 56.2 bits (137), Expect = 6e-11
 Identities = 7/33 (21%), Positives = 15/33 (45%)

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
               ++H  A++G +  +   I +   IN  D+
Sbjct: 2   ANSLSVHQLAAQGEMLYLATRIEQENVINHTDE 34

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  133 bits (336), Expect = 2e-40
 Identities = 34/105 (32%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +  T    AA     + +  LL   E  +V +AVDE G   +   A +G+   V +L 
Sbjct: 41  VSEYETPWWTAARKADEQALSQLL---EDRDV-DAVDENGRTALLFVAGLGSDKCVRLLA 96

Query: 102 SKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GAD++ ++  GG TALH AA     ++VE L+  GA I  +D+
Sbjct: 97  EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVEDE 141

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  121 bits (305), Expect = 8e-36
 Identities = 26/105 (24%), Positives = 45/105 (42%), Gaps = 4/105 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 72  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 128

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           L+  GAD+ ++++ G TAL  A            +  G +I  + 
Sbjct: 129 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEK 173

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score =  115 bits (290), Expect = 1e-33
 Identities = 26/104 (25%), Positives = 41/104 (39%), Gaps = 7/104 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +   A+V      E   P  +AA   +   +  LL
Sbjct: 11  AGEGAMEYLIEWKDGHSPSWVPSSYIA--ADV----VSEYETPWWTAARKADEQALSQLL 64

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D 
Sbjct: 65  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 107

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 81.0 bits (201), Expect = 3e-20
 Identities = 12/76 (15%), Positives = 24/76 (31%), Gaps = 4/76 (5%)

Query: 70  SANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
           +  + +    EG          G+           ADV  +     T    AA K   + 
Sbjct: 3   NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQA 59

Query: 130 VELLISRGAKINSKDK 145
           +  L+     +++ D+
Sbjct: 60  LSQLLE-DRDVDAVDE 74

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A Length = 183

 Score = 54.0 bits (131), Expect = 5e-10
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 19/78 (24%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT------ 95
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T      
Sbjct: 107 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 163

Query: 96  ----------IVEMLLSK 103
                     ++ +L  +
Sbjct: 164 QFGRRIGLEKVINVLEGQ 181

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  131 bits (332), Expect = 5e-40
 Identities = 31/104 (29%), Positives = 49/104 (47%), Gaps = 4/104 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +     L  AA+ G  E +  LL  +   N VNA +  G   +     +GN  I   LL
Sbjct: 2   AEPWGNELASAAARGDLEQLTSLLQNN--VN-VNAQNGFGRTALQ-VMKLGNPEIARRLL 57

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +GA+ +LK+  G   +H AA  G+L  ++ L+   A +N +D 
Sbjct: 58  LRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNIEDN 101

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  126 bits (320), Expect = 3e-38
 Identities = 36/106 (33%), Positives = 55/106 (51%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N   RT L      G+PE+   LL     AN  +  D  G+A IH AA  G +  ++ L
Sbjct: 34  QNGFGRTALQ-VMKLGNPEIARRLLLRG--ANP-DLKDRTGFAVIHDAARAGFLDTLQTL 89

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDK 145
           L   ADVN++++ G   LH AA +G L++VE L+   A  +  ++ 
Sbjct: 90  LEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNH 135

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score =  117 bits (296), Expect = 1e-34
 Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 4/99 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++     ++H AA  G  + ++ LL     A+V N  D EG  P+H AA  G++ +VE L
Sbjct: 66  KDRTGFAVIHDAARAGFLDTLQTLLEFQ--ADV-NIEDNEGNLPLHLAAKEGHLRVVEFL 122

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           +   A +V  +N  G TA   A   G  ++V L+ + GA
Sbjct: 123 VKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGA 161

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A Length = 162

 Score = 92.4 bits (231), Expect = 8e-25
 Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR 136
           + E     + SAA+ G++  +  LL    +VN +N  GRTAL      G  +I   L+ R
Sbjct: 1   MAEPWGNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMK-LGNPEIARRLLLR 59

Query: 137 GAKINSKDK 145
           GA  + KD+
Sbjct: 60  GANPDLKDR 68

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  132 bits (336), Expect = 6e-40
 Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 2/105 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++  RT LH A S     V +IL+     A  ++A   +G  P+  AA +    ++E L
Sbjct: 54  QDNMGRTPLHAAVSADAQGVFQILIRNR--ATDLDARMHDGTTPLILAARLAVEGMLEDL 111

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++  ADVN  +D G++ALH+AA+   +    +L+  GA  + ++ 
Sbjct: 112 INSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNN 156

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  131 bits (333), Expect = 2e-39
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  D  T L +AA      ++E L++    A+V NAVD+ G + +H AA++ NV    +L
Sbjct: 88  RMHDGTTPLILAARLAVEGMLEDLINSH--ADV-NAVDDLGKSALHWAAAVNNVDAAVVL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+ +++N+   T L  AA +G  +  ++L+   A  +  D 
Sbjct: 145 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 189

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  123 bits (311), Expect = 4e-36
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 3/104 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 121 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 177

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           L   A+ ++ +   R     A  +    IV LL       + + 
Sbjct: 178 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEYNLVRSPQL 221

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  122 bits (310), Expect = 4e-36
 Identities = 29/106 (27%), Positives = 48/106 (45%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA     +  + LL     A+  N  D  G  P+H+A S     + ++L
Sbjct: 21  TDRTGETALHLAARYSRSDAAKRLLEAS--AD-ANIQDNMGRTPLHAAVSADAQGVFQIL 77

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +   A D++ +   G T L  AA      ++E LI+  A +N+ D 
Sbjct: 78  IRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDD 123

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A Length = 223

 Score =  115 bits (291), Expect = 4e-33
 Identities = 24/91 (26%), Positives = 41/91 (45%), Gaps = 3/91 (3%)

Query: 56  GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR 115
             P V+   +     A++ N  D  G   +H AA        + LL   AD N++++ GR
Sbjct: 2   DAPAVISDFIYQG--ASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGR 59

Query: 116 TALHYAASKGWLKIVELLISRGAK-INSKDK 145
           T LH A S     + ++LI   A  ++++  
Sbjct: 60  TPLHAAVSADAQGVFQILIRNRATDLDARMH 90

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  131 bits (333), Expect = 7e-40
 Identities = 33/105 (31%), Positives = 50/105 (47%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T L  A       + E LLS    +NV N  D  G  P+  +   G   +   L
Sbjct: 64  KDIEGSTALIWAVKNNRLGIAEKLLSKG--SNV-NTKDFSGKTPLMWSIIFGYSEMSYFL 120

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+VN +N  G T L  A+  G  +IV+ L+  GA I+++D 
Sbjct: 121 LEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDL 165

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  115 bits (291), Expect = 2e-33
 Identities = 27/95 (28%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++   +T L  +   G+ E+   LL     ANV N  + EG  P+  A+  G   IV+ L
Sbjct: 97  KDFSGKTPLMWSIIFGYSEMSYFLLEHG--ANV-NDRNLEGETPLIVASKYGRSEIVKKL 153

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GAD++ ++  G TA   A   G  +++++   
Sbjct: 154 LELGADISARDLTGLTAEASARIFGRQEVIKIFTE 188

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score =  114 bits (289), Expect = 3e-33
 Identities = 22/104 (21%), Positives = 42/104 (40%), Gaps = 9/104 (8%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           + +   +  +       + ++ L          N  D     P+  A  +G    ++ L+
Sbjct: 5   DKNGEIVEKIKDEKSINQNLDFL---------RNYRDSYNRTPLMVACMLGMENAIDKLV 55

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                +  K+  G TAL +A     L I E L+S+G+ +N+KD 
Sbjct: 56  ENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDF 99

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium} Length = 192

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 6/65 (9%), Positives = 13/65 (20%), Gaps = 27/65 (41%)

Query: 108 NLKNDGGRTALHYAASKGWLK---------------------------IVELLISRGAKI 140
           +  +  G         K   +                            ++ L+    K+
Sbjct: 2   SHMDKNGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKL 61

Query: 141 NSKDK 145
             KD 
Sbjct: 62  EDKDI 66

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  129 bits (327), Expect = 7e-40
 Identities = 32/104 (30%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                     A   G  + V+  ++     +V N   E G  P+H AA  G + I+E LL
Sbjct: 4   GSMCDKEFMWALKNGDLDEVKDYVAKG--EDV-NRTLEGGRKPLHYAADCGQLEILEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            KGAD+N  +    T L  A  +G +  V+LL+S+GA    K  
Sbjct: 61  LKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGP 104

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score =  109 bits (276), Expect = 4e-32
 Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 3/91 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
             +  R  LH AA CG  E++E LL     A++ NA D+    P+ SA   G+V+ V++L
Sbjct: 36  TLEGGRKPLHYAADCGQLEILEFLLLKG--ADI-NAPDKHHITPLLSAVYEGHVSCVKLL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           LSKGAD  +K   G TA     ++    +++
Sbjct: 93  LSKGADKTVKGPDGLTAFEATDNQAIKALLQ 123

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A Length = 123

 Score = 99.8 bits (250), Expect = 3e-28
 Identities = 27/70 (38%), Positives = 39/70 (55%)

Query: 76  AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            +          A   G++  V+  ++KG DVN   +GGR  LHYAA  G L+I+E L+ 
Sbjct: 2   PLGSMCDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLL 61

Query: 136 RGAKINSKDK 145
           +GA IN+ DK
Sbjct: 62  KGADINAPDK 71

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (336), Expect = 1e-39
 Identities = 33/105 (31%), Positives = 54/105 (51%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++D   T +  A    H ++V++LLS    +++ N  D E    +H AA  G V I E+L
Sbjct: 107 QDDGGWTPMIWATEYKHVDLVKLLLSKG--SDI-NIRDNEENICLHWAAFSGCVDIAEIL 163

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L+   D++  N  G + LH AA +     V L +SR + +  K+K
Sbjct: 164 LAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNK 208

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  132 bits (335), Expect = 1e-39
 Identities = 37/105 (35%), Positives = 63/105 (60%), Gaps = 2/105 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV+ LLS       VN  D+ GW P+  A    +V +V++L
Sbjct: 73  KDAEGSTCLHLAAKKGHYEVVQYLLSNG--QMDVNCQDDGGWTPMIWATEYKHVDLVKLL 130

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LSKG+D+N++++     LH+AA  G + I E+L++    +++ + 
Sbjct: 131 LSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAAKCDLHAVNI 175

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  125 bits (317), Expect = 5e-37
 Identities = 34/106 (32%), Positives = 57/106 (53%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + + R+ LH AA  GH ++  +L+     AN+ +   E+   P+  AA   ++  V+ L
Sbjct: 7   EHQNKRSPLHAAAEAGHVDICHMLVQAG--ANI-DTCSEDQRTPLMEAAENNHLEAVKYL 63

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDK 145
           +  GA V+ K+  G T LH AA KG  ++V+ L+S G   +N +D 
Sbjct: 64  IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDD 109

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  119 bits (301), Expect = 2e-34
 Identities = 29/98 (29%), Positives = 48/98 (48%), Gaps = 3/98 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R++++   LH AA  G  ++ EILL+     ++ +AV+  G +P+H AA       V + 
Sbjct: 140 RDNEENICLHWAAFSGCVDIAEILLAAK--CDL-HAVNIHGDSPLHIAARENRYDCVVLF 196

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           LS+ +DV LKN  G T L  A+    +     +     
Sbjct: 197 LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQ 234

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score =  102 bits (256), Expect = 7e-28
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 72  NV-VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++      +   +P+H+AA  G+V I  ML+  GA+++  ++  RT L  AA    L+ V
Sbjct: 1   HMNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAV 60

Query: 131 ELLISRGAKINSKDK 145
           + LI  GA ++ KD 
Sbjct: 61  KYLIKAGALVDPKDA 75

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A* Length = 237

 Score = 70.1 bits (173), Expect = 1e-15
 Identities = 16/66 (24%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    + LH+AA     + V + LS D  ++V    ++EG  P+  A+    V     +
Sbjct: 173 VNIHGDSPLHIAARENRYDCVVLFLSRD--SDV-TLKNKEGETPLQCASLNSQVWSALQM 229

Query: 101 LSKGAD 106
                D
Sbjct: 230 SKALQD 235

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  129 bits (327), Expect = 1e-39
 Identities = 44/102 (43%), Positives = 61/102 (59%), Gaps = 3/102 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           D    L  AA  G  + V IL++    A+V NA DE G  P++ A + G++ IVE+LL  
Sbjct: 13  DLGKKLLEAARAGQDDEVRILMANG--ADV-NAKDEYGLTPLYLATAHGHLEIVEVLLKN 69

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GADVN  +  G T LH AA  G L+I E+L+  GA +N++DK
Sbjct: 70  GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDK 111

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score =  116 bits (293), Expect = 1e-34
 Identities = 38/95 (40%), Positives = 58/95 (61%), Gaps = 3/95 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +++   T L++A + GH E+VE+LL     A+V NAVD  G+ P+H AA IG++ I E+L
Sbjct: 43  KDEYGLTPLYLATAHGHLEIVEVLLKNG--ADV-NAVDAIGFTPLHLAAFIGHLEIAEVL 99

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           L  GADVN ++  G+TA   +   G   + E+L  
Sbjct: 100 LKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQK 134

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C Length = 136

 Score = 97.1 bits (243), Expect = 6e-27
 Identities = 25/75 (33%), Positives = 42/75 (56%)

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
           ++  +    +    +  AA  G    V +L++ GADVN K++ G T L+ A + G L+IV
Sbjct: 4   SHHHHHHGSDLGKKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIV 63

Query: 131 ELLISRGAKINSKDK 145
           E+L+  GA +N+ D 
Sbjct: 64  EVLLKNGADVNAVDA 78

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  131 bits (333), Expect = 3e-39
 Identities = 33/105 (31%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  D  T L +AA      ++E L++    A+V NAVD+ G + +H AA++ NV    +L
Sbjct: 120 RMHDGTTPLILAARLAVEGMLEDLINSH--ADV-NAVDDLGKSALHWAAAVNNVDAAVVL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+ +++N+   T L  AA +G  +  ++L+   A  +  D 
Sbjct: 177 LKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDH 221

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  122 bits (310), Expect = 9e-36
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 3/103 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D  ++ LH AA+  + +   +LL     AN  +  +     P+  AA  G+    ++L
Sbjct: 153 VDDLGKSALHWAAAVNNVDAAVVLLKNG--ANK-DMQNNREETPLFLAAREGSYETAKVL 209

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           L   A+ ++ +   R     A  +    IV LL       +  
Sbjct: 210 LDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHHHH 252

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score =  121 bits (307), Expect = 3e-35
 Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 16/119 (13%)

Query: 41  RNDDDRTLLHVAASCG-------------HPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           R  D  T L +A+  G              P V+   +     A++ N  D  G   +H 
Sbjct: 6   RGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQG--ASLHNQTDRTGETALHL 63

Query: 88  AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDK 145
           AA        + LL   AD N++++ GRT LH A S     + ++LI   A  ++++  
Sbjct: 64  AARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMH 122

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 88.3 bits (220), Expect = 2e-22
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 14/86 (16%)

Query: 74  VNAVDEEGWAPIHSAASIGNVT-------------IVEMLLSKGADV-NLKNDGGRTALH 119
           VN    +G+ P+  A+  G                ++   + +GA + N  +  G TALH
Sbjct: 3   VNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALH 62

Query: 120 YAASKGWLKIVELLISRGAKINSKDK 145
            AA        + L+   A  N +D 
Sbjct: 63  LAARYSRSDAAKRLLEASADANIQDN 88

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 72.9 bits (180), Expect = 1e-16
 Identities = 17/71 (23%), Positives = 29/71 (40%), Gaps = 3/71 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N+ + T L +AA  G  E  ++LL     AN  +  D     P   A    +  IV +L
Sbjct: 186 QNNREETPLFLAAREGSYETAKVLLDHF--ANR-DITDHMDRLPRDIAQERMHHDIVRLL 242

Query: 101 LSKGADVNLKN 111
             +    +  +
Sbjct: 243 DLEHHHHHHHH 253

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A Length = 253

 Score = 50.9 bits (123), Expect = 1e-08
 Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 14/54 (25%)

Query: 106 DVNLKNDGGRTALHYAASKGW-------------LKIVELLISRGAKI-NSKDK 145
           DVN++   G T L  A+  G                ++   I +GA + N  D+
Sbjct: 2   DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFIYQGASLHNQTDR 55

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (332), Expect = 1e-38
 Identities = 39/105 (37%), Positives = 56/105 (53%), Gaps = 4/105 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEML 100
             +D  LL  A      ++V+ LL     ANV N  +EE GW P+H+A  +    IVE+L
Sbjct: 2   AVEDNHLLIKAVQNEDVDLVQQLLEGG--ANV-NFQEEEGGWTPLHNAVQMSREDIVELL 58

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GAD  L+   G T    AA  G +K+++L +S+GA +N  D 
Sbjct: 59  LRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDF 103

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  131 bits (331), Expect = 2e-38
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +   T LH A      ++VE+LL     A+      + G  P   AA  G+V ++++ L
Sbjct: 36  EEGGWTPLHNAVQMSREDIVELLLRHG--ADP-VLRKKNGATPFLLAAIAGSVKLLKLFL 92

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           SKGADVN  +  G TA   AA  G +K ++ L  RGA +N + K
Sbjct: 93  SKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRK 136

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  122 bits (309), Expect = 3e-35
 Identities = 30/109 (27%), Positives = 46/109 (42%), Gaps = 8/109 (7%)

Query: 41  RNDDDRTLLHVAASCGH----PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            ++  R  L  A           +  +LL     A+V N   E G  P+  A    ++ +
Sbjct: 178 CDNMGRNALIHALLSSDDSDVEAITHLLLDHG--ADV-NVRGERGKTPLILAVEKKHLGL 234

Query: 97  VEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           V+ LL +   ++N  +  G+TAL  A      KI ELL  RGA  +  D
Sbjct: 235 VQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGD 283

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  120 bits (303), Expect = 2e-34
 Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 14/116 (12%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +  T   +AA  G  +++++ LS    A+V N  D  G+     AA  G V  ++ L
Sbjct: 68  RKKNGATPFLLAAIAGSVKLLKLFLSKG--ADV-NECDFYGFTAFMEAAVYGKVKALKFL 124

Query: 101 LSKGADVNLKN----------DGGRTALHYAASKGWLKIVELLIS-RGAKINSKDK 145
             +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D 
Sbjct: 125 YKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDN 180

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1 Length = 285

 Score =  119 bits (302), Expect = 3e-34
 Identities = 44/159 (27%), Positives = 68/159 (42%), Gaps = 21/159 (13%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSL--------SKQQLLKSLSLRNDDDRTLLHV 51
           D++    D        +AA  G     K L         +++  +          T L  
Sbjct: 97  DVN--ECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMD 154

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT----IVEMLLSKGADV 107
           AA  GH EV++ILL  +  A+V NA D  G   +  A    + +    I  +LL  GADV
Sbjct: 155 AAEKGHVEVLKILLD-EMGADV-NACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADV 212

Query: 108 NLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDK 145
           N++ + G+T L  A  K  L +V+ L+ +   +IN  D 
Sbjct: 213 NVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDS 251

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  129 bits (328), Expect = 1e-38
 Identities = 34/106 (32%), Positives = 54/106 (50%), Gaps = 2/106 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D   T  H+A S G+ EVV+ L       ++ N +  +G   +H A       + + L
Sbjct: 68  PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDL-NKITNQGVTCLHLAVGKKWFEVSQFL 126

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDK 145
           +  GA V +K+   +  LH AAS G LK++ELL   G + +N +DK
Sbjct: 127 IENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDK 172

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  123 bits (312), Expect = 3e-36
 Identities = 39/145 (26%), Positives = 65/145 (44%), Gaps = 9/145 (6%)

Query: 7   QTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVE 62
               D         A   G+    KSL  + L   L+   +   T LH+A      EV +
Sbjct: 65  DDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQ 124

Query: 63  ILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYA 121
            L+     A+V    D+    P+H AAS+G++ ++E+L   G + VN ++  G T L +A
Sbjct: 125 FLIENG--ASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHA 181

Query: 122 ASKGWLKIVELLISR-GAKINSKDK 145
            ++G      LL+ + GA+ +  D 
Sbjct: 182 LAEGHGDAAVLLVEKYGAEYDLVDN 206

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  111 bits (279), Expect = 2e-31
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 9/106 (8%)

Query: 46  RTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
              LH A       +V E+L S    +  +   D++G  P+H + S     I   LLSK 
Sbjct: 3   NYPLHQACMENEFFKVQELLHSKP--SL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59

Query: 105 ADVNLKN---DGGRTALHYAASKGWLKIVELLISR--GAKINSKDK 145
            +VNL +   D G T  H A S G L++V+ L  R     +N    
Sbjct: 60  ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITN 105

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score =  107 bits (269), Expect = 8e-30
 Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 6/96 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++  ++  LH AAS G  +++E+L  +    + VN  D++GW P+  A + G+     +L
Sbjct: 136 KDKFNQIPLHRAASVGSLKLIELLCGLG--KSAVNWQDKQGWTPLFHALAEGHGDAAVLL 193

Query: 101 LSK-GADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           + K GA+ +L ++ G  A   A ++   ++ +  ++
Sbjct: 194 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLN 226

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A Length = 228

 Score = 87.5 bits (218), Expect = 3e-22
 Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 1/69 (1%)

Query: 81  GWAPIHSAASIGNV-TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
              P+H A        + E+L SK + +  K+  GR  LH++ S    +I   L+S+   
Sbjct: 2   SNYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMEN 61

Query: 140 INSKDKACN 148
           +N  D   +
Sbjct: 62  VNLDDYPDD 70

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  129 bits (327), Expect = 2e-38
 Identities = 26/104 (25%), Positives = 51/104 (49%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N     LL  ++  G  ++V+ ++      +  +  ++EG   +H+A   G+  IV+ L+
Sbjct: 34  NPLPLALLLDSSLEGEFDLVQRIIYEV--DDP-SLPNDEGITALHNAVCAGHTEIVKFLV 90

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G +VN  +  G T LH AAS   +++ + L+  GA + +   
Sbjct: 91  QFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTY 134

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  124 bits (314), Expect = 1e-36
 Identities = 22/103 (21%), Positives = 41/103 (39%), Gaps = 4/103 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
              +  L         +     ++       V   +    A +  ++  G   +V+ ++ 
Sbjct: 3   ITGQVSLPPGKRTNLRKTGSERIAHG--MR-VKF-NPLPLALLLDSSLEGEFDLVQRIIY 58

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  D +L ND G TALH A   G  +IV+ L+  G  +N+ D 
Sbjct: 59  EVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADS 101

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  121 bits (307), Expect = 2e-35
 Identities = 33/108 (30%), Positives = 48/108 (44%), Gaps = 6/108 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            ND+  T LH A   GH E+V+ L+      NV NA D +GW P+H AAS  NV + + L
Sbjct: 66  PNDEGITALHNAVCAGHTEIVKFLVQFG--VNV-NAADSDGWTPLHCAASCNNVQVCKFL 122

Query: 101 LSKGADVNLKNDGG---RTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  GA V                   +G+ +  + L     K+   +K
Sbjct: 123 VESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNK 170

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score =  101 bits (254), Expect = 2e-27
 Identities = 21/106 (19%), Positives = 36/106 (33%), Gaps = 3/106 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D  T LH AASC + +V + L+    +   +   D +  A        G     + L
Sbjct: 99  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 158

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
                 + + N G   AL     +      EL +  G  +    + 
Sbjct: 159 YGVQEKMGIMNKGVIYALWDYEPQN---DDELPMKEGDCMTIIHRE 201

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 87.7 bits (218), Expect = 3e-22
 Identities = 8/68 (11%), Positives = 20/68 (29%), Gaps = 1/68 (1%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           +  G   +               ++ G  V   N      L  ++ +G   +V+ +I   
Sbjct: 2   EITGQVSLPPGKRTNLRKTGSERIAHGMRVK-FNPLPLALLLDSSLEGEFDLVQRIIYEV 60

Query: 138 AKINSKDK 145
              +  + 
Sbjct: 61  DDPSLPND 68

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B Length = 239

 Score = 52.2 bits (126), Expect = 5e-09
 Identities = 6/38 (15%), Positives = 11/38 (28%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY 151
           G+ +L         K     I+ G ++         L 
Sbjct: 5   GQVSLPPGKRTNLRKTGSERIAHGMRVKFNPLPLALLL 42

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  132 bits (335), Expect = 2e-38
 Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA      +V++LL     A+V +A D+ G  P+H+A S G+  + E+L
Sbjct: 54  SDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADV-HAKDKGGLVPLHNACSYGHYEVTELL 110

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA VN  +    T LH AASK  +++  LL+S GA     + 
Sbjct: 111 LKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNC 155

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  126 bits (318), Expect = 6e-36
 Identities = 36/106 (33%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGH-PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             +  +  L  AA  G+  +++ +L  ++   N  +A D     P+H AA    V IV++
Sbjct: 20  TGEYKKDELLEAARSGNEEKLMALLTPLN--VNC-HASDGRKSTPLHLAAGYNRVRIVQL 76

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LL  GADV+ K+ GG   LH A S G  ++ ELL+  GA +N+ D 
Sbjct: 77  LLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGACVNAMDL 122

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  125 bits (317), Expect = 6e-36
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 6/108 (5%)

Query: 41  RNDDDRTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +     T LH A +  HP   +V E+LL     ANV N  +++   P+H AA   +  ++
Sbjct: 207 QPQSHETALHCAVASLHPKRKQVAELLLRKG--ANV-NEKNKDFMTPLHVAAERAHNDVM 263

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           E+L   GA +N  +  G+TALH AA  G L+   LL+S G+  +    
Sbjct: 264 EVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISL 311

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  120 bits (304), Expect = 6e-34
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 8/105 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N D  T LHVAA   H +V+E+L      A + NA+D  G   +H AA  G++    +L
Sbjct: 243 KNKDFMTPLHVAAERAHNDVMEVLHKHG--AKM-NALDSLGQTALHRAALAGHLQTCRLL 299

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LS G+D ++ +  G TA          + V+ ++S    + + D 
Sbjct: 300 LSYGSDPSIISLQGFTAAQMGN-----EAVQQILSESTPMRTSDV 339

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score =  116 bits (294), Expect = 2e-32
 Identities = 33/101 (32%), Positives = 49/101 (48%), Gaps = 3/101 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++      LH A S GH EV E+LL     A V NA+D   + P+H AAS   V +  +L
Sbjct: 87  KDKGGLVPLHNACSYGHYEVTELLLK--HGACV-NAMDLWQFTPLHEAASKNRVEVCSLL 143

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           LS GAD  L N  G++A+  A +    + +       + + 
Sbjct: 144 LSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQ 184

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 99.1 bits (248), Expect = 9e-26
 Identities = 23/88 (26%), Positives = 38/88 (43%), Gaps = 4/88 (4%)

Query: 59  EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEMLLSKGADVNLKNDGGRTA 117
           +    L     SA       E     +  AA  GN   ++ +L     + +  +    T 
Sbjct: 5   KSALDLAD--PSAKA-VLTGEYKKDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTP 61

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDK 145
           LH AA    ++IV+LL+  GA +++KDK
Sbjct: 62  LHLAAGYNRVRIVQLLLQHGADVHAKDK 89

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus} Length = 351

 Score = 78.3 bits (194), Expect = 3e-18
 Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 10/85 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +   +T LH AA  GH +   +LLS    ++  + +  +G+              V+ +
Sbjct: 276 LDSLGQTALHRAALAGHLQTCRLLLSYG--SDP-SIISLQGFTAAQMGN-----EAVQQI 327

Query: 101 LSKGADVNLKNDGGRTALHYAASKG 125
           LS+   +   +   R  L  A+  G
Sbjct: 328 LSESTPMRTSDVDYR--LLEASKAG 350

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  128 bits (324), Expect = 2e-38
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           ++  +   LL  A      +V EIL        V + VD EG  P++ A    ++ I + 
Sbjct: 1   MKTYEVGALLEAANQRDTKKVKEILQDTT--YQV-DEVDTEGNTPLNIAVHNNDIEIAKA 57

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDK 145
           L+ +GAD+NL+N    +   YA ++G  +I+  ++      +N  ++
Sbjct: 58  LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNR 104

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  121 bits (305), Expect = 2e-35
 Identities = 27/107 (25%), Positives = 48/107 (44%), Gaps = 5/107 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + +  T L++A      E+ + L+     A++ N  +    +P   A + G   I+  +
Sbjct: 35  VDTEGNTPLNIAVHNNDIEIAKALIDRG--ADI-NLQNSISDSPYLYAGAQGRTEILAYM 91

Query: 101 LSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDK 145
           L     D+N  N  G  AL  AA KG +  V+LL+  G   I+ ++ 
Sbjct: 92  LKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQND 138

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  120 bits (303), Expect = 3e-35
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 8/111 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    +    A + G  E++  +L        +N  +  G   +  AA  G++  V++L
Sbjct: 68  QNSISDSPYLYAGAQGRTEILAYMLKHA--TPDLNKHNRYGGNALIPAAEKGHIDNVKLL 125

Query: 101 LSKG-ADVNLKNDGGRTALHYAA-----SKGWLKIVELLISRGAKINSKDK 145
           L  G  D++ +ND G TAL  A      ++ +  IV+LL+  GA  + KD 
Sbjct: 126 LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDN 176

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis} Length = 201

 Score =  112 bits (283), Expect = 3e-32
 Identities = 28/100 (28%), Positives = 51/100 (51%), Gaps = 7/100 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT----- 95
            N      L  AA  GH + V++LL      ++ +  ++ G+  +  A  +         
Sbjct: 102 HNRYGGNALIPAAEKGHIDNVKLLLEDG-REDI-DFQNDFGYTALIEAVGLREGNQLYQD 159

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
           IV++L+  GAD ++K++ GRTA+ YA  KG+ +I ++L  
Sbjct: 160 IVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  129 bits (327), Expect = 2e-38
 Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 10/144 (6%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQ--QLLKSLSLRNDDDRTLLHVAASCGHPEVVE 62
             D+        A E    +  ++L          L  RN D  T LHVA +    E V+
Sbjct: 74  ALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQ 133

Query: 63  ILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           +LL     A++ +AVD + G +P+  A    ++++V++LL  GA+VN +   G +ALH A
Sbjct: 134 LLLERG--ADI-DAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSA 190

Query: 122 ASKGWLKIVELLISRGAKINSKDK 145
           + +G L +V  L+  GA  + K+ 
Sbjct: 191 SGRGLLPLVRTLVRSGADSSLKNC 214

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  124 bits (315), Expect = 1e-36
 Identities = 22/114 (19%), Positives = 48/114 (42%), Gaps = 7/114 (6%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDES--ANVVNAVDEEGWAPIHSAASIGNVT 95
            +  ++D  T LH+A   G+   V  L+++ +     + +  +     P+H A      +
Sbjct: 2   ATRADEDGDTPLHIAVVQGNLPAVHRLVNLFQQGGREL-DIYNNLRQTPLHLAVITTLPS 60

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK----INSKDK 145
           +V +L++ GA     +  G+TA H A        +  L+   A     + +++ 
Sbjct: 61  VVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 114

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A Length = 241

 Score =  120 bits (304), Expect = 5e-35
 Identities = 31/97 (31%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               R+ L  A       +V++LL     ANV NA    G + +HSA+  G + +V  L+
Sbjct: 147 IKSGRSPLIHAVENNSLSMVQLLLQHG--ANV-NAQMYSGSSALHSASGRGLLPLVRTLV 203

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
             GAD +LKN    T L  A S+  + I+    +R A
Sbjct: 204 RSGADSSLKNCHNDTPLMVARSRRVIDILRGKATRPA 240

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  129 bits (328), Expect = 4e-38
 Identities = 27/108 (25%), Positives = 42/108 (38%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
                +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + V
Sbjct: 2   FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTV 61

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           E L + GA V +   GG TALH A          +L+           
Sbjct: 62  EKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  128 bits (323), Expect = 2e-37
 Identities = 32/106 (30%), Positives = 46/106 (43%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            N D  T LHVA      E+V +L      A++ N  +   G  P+H A      +++E+
Sbjct: 154 ENYDGHTPLHVAVIHKDAEMVRLLRDAG--ADL-NKPEPTCGRTPLHLAVEAQAASVLEL 210

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LL  GAD   +  GGRT L  A  +    +  LL + GA       
Sbjct: 211 LLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGG 256

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  109 bits (274), Expect = 4e-30
 Identities = 21/116 (18%), Positives = 32/116 (27%), Gaps = 11/116 (9%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------VNAVDEEGWAPIHSAAS 90
                 T LH+A          +LL    S              +   +   AP    + 
Sbjct: 74  AERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAAVDSQ 133

Query: 91  IGNVT-IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                            +  +N  G T LH A      ++V LL   GA +N  + 
Sbjct: 134 PNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP 189

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  106 bits (268), Expect = 3e-29
 Identities = 20/96 (20%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               RT LH+A       V+E+LL     A+   A    G  P+ SA    N  +  +L 
Sbjct: 189 PTCGRTPLHLAVEAQAASVLELLLKAG--ADP-TARMYGGRTPLGSALLRPNPILARLLR 245

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           + GA          +    + S       +      
Sbjct: 246 AHGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDEYD 281

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D Length = 282

 Score =  103 bits (260), Expect = 5e-28
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 3/76 (3%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWLKI 129
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G    
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEAST 60

Query: 130 VELLISRGAKINSKDK 145
           VE L + GA +   ++
Sbjct: 61  VEKLYAAGAGVLVAER 76

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  132 bits (335), Expect = 6e-38
 Identities = 46/146 (31%), Positives = 67/146 (45%), Gaps = 11/146 (7%)

Query: 4   DIDQTIKDKD--LFKAAETGDSSTFKSLSKQQLLK--SLSLRNDDDRTLLHVAASCGHPE 59
                 +     L  A+  G     K+L    L +  S ++ N    T LH+AA  GH E
Sbjct: 6   SGGGGGESGLTPLHVASFMGHLPIVKNL----LQRGASPNVSNVKVETPLHMAARAGHTE 61

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           V + LL     A V NA  ++   P+H AA IG+  +V++LL   A+ NL    G T LH
Sbjct: 62  VAKYLLQ--NKAKV-NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 118

Query: 120 YAASKGWLKIVELLISRGAKINSKDK 145
            AA +G ++ V  L+ + A      K
Sbjct: 119 IAAREGHVETVLALLEKEASQACMTK 144

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (333), Expect = 1e-37
 Identities = 41/144 (28%), Positives = 64/144 (44%), Gaps = 9/144 (6%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           +  +        L  AA  G   T  +L +++   S +       T LHVAA  G   V 
Sbjct: 105 NPNLATTAGHTPLHIAAREGHVETVLALLEKEA--SQACMTKKGFTPLHVAAKYGKVRVA 162

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           E+LL  D  A+  NA  + G  P+H A    N+ IV++LL +G   +     G T LH A
Sbjct: 163 ELLLERD--AHP-NAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIA 219

Query: 122 ASKGWLKIVELLISRGAKINSKDK 145
           A +  +++   L+  G   N++  
Sbjct: 220 AKQNQVEVARSLLQYGGSANAESV 243

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  131 bits (332), Expect = 2e-37
 Identities = 37/105 (35%), Positives = 57/105 (54%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T LH+AA  GH E+V +LLS    AN  N  ++ G  P+H  A  G+V + ++L
Sbjct: 241 ESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANG-NLGNKSGLTPLHLVAQEGHVPVADVL 297

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  G  V+     G T LH A+  G +K+V+ L+   A +N+K K
Sbjct: 298 IKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTK 342

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (328), Expect = 6e-37
 Identities = 32/105 (30%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              +  T LHVA    + ++V++LL      +  ++    G+ P+H AA    V +   L
Sbjct: 175 AGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSP-HSPAWNGYTPLHIAAKQNQVEVARSL 231

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  G   N ++  G T LH AA +G  ++V LL+S+ A  N  +K
Sbjct: 232 LQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNK 276

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  129 bits (327), Expect = 1e-36
 Identities = 38/105 (36%), Positives = 52/105 (49%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N    T LH+ A  GH  V ++L+       V +A    G+ P+H A+  GN+ +V+ L
Sbjct: 274 GNKSGLTPLHLVAQEGHVPVADVLIKHG--VMV-DATTRMGYTPLHVASHYGNIKLVKFL 330

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   ADVN K   G + LH AA +G   IV LL+  GA  N    
Sbjct: 331 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSS 375

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score =  119 bits (301), Expect = 6e-33
 Identities = 34/108 (31%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVA+  G+ ++V+ LL     A+V NA  + G++P+H AA  G+  IV +L
Sbjct: 307 TTRMGYTPLHVASHYGNIKLVKFLLQHQ--ADV-NAKTKLGYSPLHQAAQQGHTDIVTLL 363

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELL---ISRGAKINSKDK 145
           L  GA  N  +  G T L  A   G++ + ++L       + +   DK
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 411

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 89.9 bits (224), Expect = 4e-22
 Identities = 26/148 (17%), Positives = 56/148 (37%), Gaps = 23/148 (15%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            +D     +     L  A+  G+    K L + Q    ++ +     + LH AA  GH +
Sbjct: 303 MVD--ATTRMGYTPLHVASHYGNIKLVKFLLQHQA--DVNAKTKLGYSPLHQAAQQGHTD 358

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML---LSKGADVNLKNDGGRT 116
           +V +LL     A+  N V  +G  P+  A  +G +++ ++L     + + V + +    +
Sbjct: 359 IVTLLLKNG--ASP-NEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMS 415

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKD 144
                        V+ ++        + 
Sbjct: 416 FPE---------TVDEILDVSEDEGEEL 434

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1 Length = 437

 Score = 72.5 bits (179), Expect = 6e-16
 Identities = 16/44 (36%), Positives = 21/44 (47%)

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           S G       + G T LH A+  G L IV+ L+ RGA  N  + 
Sbjct: 2   SPGISGGGGGESGLTPLHVASFMGHLPIVKNLLQRGASPNVSNV 45

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  124 bits (315), Expect = 6e-38
 Identities = 31/106 (29%), Positives = 48/106 (45%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                   L  AA+ G  E V  LL     A+  NA++  G  PI      G+  + E+L
Sbjct: 8   LGGSSDAGLATAAARGQVETVRQLLEAG--ADP-NALNRFGRRPIQVMMM-GSAQVAELL 63

Query: 101 LSKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+ N  +    T  +H AA +G+L  + +L   GA+++  D 
Sbjct: 64  LLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVCDA 109

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  114 bits (288), Expect = 1e-33
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 5/99 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNVTIVEM 99
            N   R  + V    G  +V E+LL     A   N  D      P+H AA  G +  + +
Sbjct: 41  LNRFGRRPIQVMMM-GSAQVAELLLLHG--AEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           L   GA +++ +  GR  +  A  +G   I   L +   
Sbjct: 97  LHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATG 135

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score =  100 bits (251), Expect = 3e-28
 Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           ++ +     A + +AA+ G V  V  LL  GAD N  N  GR  +      G  ++ ELL
Sbjct: 5   IHMLGGSSDAGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMM-MGSAQVAELL 63

Query: 134 ISRGAKINSKDK 145
           +  GA+ N  D 
Sbjct: 64  LLHGAEPNCADP 75

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1 Length = 136

 Score = 70.9 bits (175), Expect = 1e-16
 Identities = 15/67 (22%), Positives = 25/67 (37%), Gaps = 4/67 (5%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A   G+  I   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVCDAWGRLPVDLAEEQGHRDIARY 129

Query: 100 LLSKGAD 106
           L +   D
Sbjct: 130 LHAATGD 136

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  129 bits (326), Expect = 8e-38
 Identities = 34/105 (32%), Positives = 50/105 (47%), Gaps = 4/105 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  + LH A   GH   V+ILL     A V N V  +   P+ +A   G+   V +L
Sbjct: 88  ITADHVSPLHEACLGGHLSCVKILLKHG--AQV-NGVTADWHTPLFNACVSGSWDCVNLL 144

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA V  ++D   + +H AA +G ++ V  LI+ G  I+ K  
Sbjct: 145 LQHGASVQPESD-LASPIHEAARRGHVECVNSLIAYGGNIDHKIS 188

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  128 bits (325), Expect = 1e-37
 Identities = 30/103 (29%), Positives = 46/103 (44%), Gaps = 3/103 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              D + +H AA  GH   +  L+S      V N +  +  +P+H A   G+++ V++LL
Sbjct: 56  AVSDWSPMHEAAIHGHQLSLRNLISQG--WAV-NIITADHVSPLHEACLGGHLSCVKILL 112

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
             GA VN       T L  A   G    V LL+  GA +  + 
Sbjct: 113 KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPES 155

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  126 bits (318), Expect = 1e-36
 Identities = 28/104 (26%), Positives = 44/104 (42%), Gaps = 4/104 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D  + +H AA  GH E V  L++     N+ +        P++ A        V+ LL
Sbjct: 154 ESDLASPIHEAARRGHVECVNSLIAYG--GNI-DHKISHLGTPLYLACENQQRACVKKLL 210

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN +  G  + LH        ++  LL+  GA   +K+ 
Sbjct: 211 ESGADVN-QGKGQDSPLHAVVRTASEELACLLMDFGADTQAKNA 253

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  119 bits (301), Expect = 4e-34
 Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 4/104 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
              D  T L  A   G  + V +LL     A+V    + +  +PIH AA  G+V  V  L
Sbjct: 121 VTADWHTPLFNACVSGSWDCVNLLLQHG--ASV-QP-ESDLASPIHEAARRGHVECVNSL 176

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           ++ G +++ K     T L+ A        V+ L+  GA +N   
Sbjct: 177 IAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVNQGK 220

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  110 bits (278), Expect = 1e-30
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +     T L++A        V+ LL     A+V N   +   +P+H+     +  +  +L
Sbjct: 186 KISHLGTPLYLACENQQRACVKKLLESG--ADV-NQ-GKGQDSPLHAVVRTASEELACLL 241

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +  GAD   KN  G+  +     +  L     L   GA + 
Sbjct: 242 MDFGADTQAKNAEGKRPVELVPPESPL-AQLFLEREGASLP 281

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score =  109 bits (276), Expect = 2e-30
 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 4/103 (3%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
           D  +  +  +   G  +   I L  +    + +AV    W+P+H AA  G+   +  L+S
Sbjct: 25  DGKQGGMDGSKPAGPRDFPGIRLLSN--PLMGDAVS--DWSPMHEAAIHGHQLSLRNLIS 80

Query: 103 KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +G  VN+      + LH A   G L  V++L+  GA++N    
Sbjct: 81  QGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGVTA 123

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens} Length = 285

 Score = 89.1 bits (222), Expect = 2e-22
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 15/100 (15%)

Query: 51  VAASCGHPEVVEILLSVDESANVVNAVDEE-----GWAPIHSAASIGNVTIVEMLLSKGA 105
           + +S  H      L+     ++ + ++D +     G  P       G       LLS   
Sbjct: 1   MGSSHHHHHHSSGLVP--RGSH-MASMDGKQGGMDGSKPAGPRDFPG-----IRLLSNPL 52

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             +  +    + +H AA  G    +  LIS+G  +N    
Sbjct: 53  MGDAVS--DWSPMHEAAIHGHQLSLRNLISQGWAVNIITA 90

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (323), Expect = 9e-38
 Identities = 31/106 (29%), Positives = 56/106 (52%), Gaps = 4/106 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASIGNVTIVEM 99
            + ++ TLLH AA     ++V+  +S    A V + +  +    P+H A   G++++V  
Sbjct: 38  PDKENVTLLHWAAINNRIDLVKYYISKG--AIV-DQLGGDLNSTPLHWATRQGHLSMVVQ 94

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L+  GAD +L +  G + +H AA  G   IV  LI++G  ++  D+
Sbjct: 95  LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQ 140

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  127 bits (322), Expect = 1e-37
 Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 4/105 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            D + T LH A   GH  +V  L+     A+  + +D EG + IH AA  G+ +IV  L+
Sbjct: 73  GDLNSTPLHWATRQGHLSMVVQLMKYG--ADP-SLIDGEGCSCIHLAAQFGHTSIVAYLI 129

Query: 102 SKGADVNLKNDGGRTALHYAASKG-WLKIVELLISRGAKINSKDK 145
           +KG DV++ +  G T L +AA +   +    LL++    +N  DK
Sbjct: 130 AKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDK 174

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  123 bits (312), Expect = 4e-36
 Identities = 28/107 (26%), Positives = 53/107 (49%), Gaps = 5/107 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT-IVEM 99
            + +  + +H+AA  GH  +V  L++     +V + +D+ G  P+  AA   +      +
Sbjct: 105 IDGEGCSCIHLAAQFGHTSIVAYLIAKG--QDV-DMMDQNGMTPLMWAAYRTHSVDPTRL 161

Query: 100 LLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LL+    VNL       TALH+A   G   ++ LL+  GA +++++ 
Sbjct: 162 LLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  114 bits (287), Expect = 2e-32
 Identities = 26/106 (24%), Positives = 47/106 (44%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHP-EVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVE 98
            + +  T L  AA   H  +   +LL+ +   +V N  D+      +H A   GN T++ 
Sbjct: 138 MDQNGMTPLMWAAYRTHSVDPTRLLLTFN--VSV-NLGDKYHKNTALHWAVLAGNTTVIS 194

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +LL  GA+V+ +N  G +AL  A  +  + ++  L          +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQAKGYDN 240

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens} Length = 240

 Score =  104 bits (263), Expect = 7e-29
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +  +D+     I  A   G       L+  G DV   +    T LH+AA    + +V+  
Sbjct: 2   MTHIDDYSTWDIVKATQYGIYERCRELVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYY 61

Query: 134 ISRGAKINSKDK 145
           IS+GA ++    
Sbjct: 62  ISKGAIVDQLGG 73

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score =  122 bits (308), Expect = 3e-37
 Identities = 47/95 (49%), Positives = 64/95 (67%), Gaps = 3/95 (3%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           + RT LH+AA  GH EVV++LL     A+V NA D+ G  P+H AA  G++ +V++LL  
Sbjct: 1   NGRTPLHLAARNGHLEVVKLLLEA--GADV-NAKDKNGRTPLHLAARNGHLEVVKLLLEA 57

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           GADVN K+  GRT LH AA  G L++V+LL+  GA
Sbjct: 58  GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 92

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1 Length = 93

 Score = 97.8 bits (245), Expect = 1e-27
 Identities = 33/65 (50%), Positives = 46/65 (70%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           G  P+H AA  G++ +V++LL  GADVN K+  GRT LH AA  G L++V+LL+  GA +
Sbjct: 2   GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADV 61

Query: 141 NSKDK 145
           N+KDK
Sbjct: 62  NAKDK 66

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  124 bits (313), Expect = 3e-37
 Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 5/105 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N   +T L V    G   +   LL     A+  N  D  G +P+H AA  G +  +++L
Sbjct: 32  LNRFGKTALQVMMF-GSTAIALELLKQG--ASP-NVQDTSGTSPVHDAARTGFLDTLKVL 87

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  GADVN+ +  G   +H A  +G   +V  L +  + ++ +D 
Sbjct: 88  VEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA-ESDLHRRDA 131

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  120 bits (304), Expect = 6e-36
 Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 3/99 (3%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
             L  AA+ G  + V  LL   E  +  +A++  G   +      G+  I   LL +GA 
Sbjct: 4   DRLSGAAARGDVQEVRRLLH-RELVH-PDALNRFGKTALQVMMF-GSTAIALELLKQGAS 60

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            N+++  G + +H AA  G+L  +++L+  GA +N  D 
Sbjct: 61  PNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDG 99

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score =  110 bits (277), Expect = 8e-32
 Identities = 25/95 (26%), Positives = 47/95 (49%), Gaps = 4/95 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    + +H AA  G  + +++L+     A+V N  D  G  PIH A   G+  +V  L
Sbjct: 64  QDTSGTSPVHDAARTGFLDTLKVLVEHG--ADV-NVPDGTGALPIHLAVQEGHTAVVSFL 120

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS 135
            +  +D++ ++  G T L  A  +G   +V++L  
Sbjct: 121 AA-ESDLHRRDARGLTPLELALQRGAQDLVDILQG 154

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B Length = 156

 Score = 84.8 bits (211), Expect = 5e-22
 Identities = 19/66 (28%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 81  GWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK 139
               +  AA+ G+V  V  LL  +    +  N  G+TAL      G   I   L+ +GA 
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS 60

Query: 140 INSKDK 145
            N +D 
Sbjct: 61  PNVQDT 66

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  124 bits (314), Expect = 1e-36
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 2/105 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    T L+ A   GH ++VE+L +   +  + N  ++ G   +H+AA  G   IV++L
Sbjct: 102 LDKAGSTALYWACHGGHKDIVEMLFT-QPNIEL-NQQNKLGDTALHAAAWKGYADIVQLL 159

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L+KGA  +L+N   + A   A +     +++      A     + 
Sbjct: 160 LAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNA 204

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  113 bits (286), Expect = 1e-32
 Identities = 33/133 (24%), Positives = 55/133 (41%), Gaps = 11/133 (8%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           +F+A  T +  T   L  ++    +    D   T      S G   ++         +N 
Sbjct: 16  VFRALYTFEPRTPDELYIEE--GDIIYITDMSDTNWWKGTSKGRTGLIP--------SNY 65

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           V    E    P+H AA  GN++ +   L     VN  +  G TAL++A   G   IVE+L
Sbjct: 66  VAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDKAGSTALYWACHGGHKDIVEML 125

Query: 134 IS-RGAKINSKDK 145
            +    ++N ++K
Sbjct: 126 FTQPNIELNQQNK 138

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score =  100 bits (252), Expect = 2e-27
 Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 8/100 (8%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           +  +  A     P   + L    E  + +  + +          S G        L    
Sbjct: 13  QVKVFRALYTFEPRTPDELYI--EEGD-IIYITDMSDTNWWKGTSKGRT-----GLIPSN 64

Query: 106 DVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            V  + +     LH AA +G L  +   +     +N  DK
Sbjct: 65  YVAEQAESIDNPLHEAAKRGNLSWLRECLDNRVGVNGLDK 104

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A Length = 222

 Score = 91.9 bits (229), Expect = 5e-24
 Identities = 16/85 (18%), Positives = 32/85 (37%), Gaps = 3/85 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           +N    T LH AA  G+ ++V++LL+    A   +  + E       A +    ++++  
Sbjct: 136 QNKLGDTALHAAAWKGYADIVQLLLAKG--ART-DLRNIEKKLAFDMATNAACASLLKKK 192

Query: 101 LSKGADVNLKNDGGRTALHYAASKG 125
               A   L N         +  + 
Sbjct: 193 QGTDAVRTLSNAEDYLDDEDSDLEH 217

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  124 bits (313), Expect = 2e-36
 Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 3/102 (2%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           +   LL  AA  G  EVV+  +      +  +  +EEG   +H+A    N +IV+ L++ 
Sbjct: 20  NPLVLLLDAALTGELEVVQQAVKEM--NDP-SQPNEEGITALHNAICGANYSIVDFLITA 76

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           GA+VN  +  G T LH AAS     I   L+  GA I +   
Sbjct: 77  GANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTL 118

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  116 bits (293), Expect = 2e-33
 Identities = 28/108 (25%), Positives = 44/108 (40%), Gaps = 6/108 (5%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N++  T LH A    +  +V+ L++    AN VN+ D  GW P+H AAS  +  I   L+
Sbjct: 51  NEEGITALHNAICGANYSIVDFLITAG--AN-VNSPDSHGWTPLHCAASCNDTVICMALV 107

Query: 102 SKGADVNLKND-GGRTALHYAAS--KGWLKIVELLISRGAKINSKDKA 146
             GA +       G TA        +G+      L      +   +  
Sbjct: 108 QHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSG 155

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score =  103 bits (258), Expect = 3e-28
 Identities = 23/85 (27%), Positives = 36/85 (42%)

Query: 61  VEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
           +  +L    S              +  AA  G + +V+  + +  D +  N+ G TALH 
Sbjct: 1   MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHN 60

Query: 121 AASKGWLKIVELLISRGAKINSKDK 145
           A       IV+ LI+ GA +NS D 
Sbjct: 61  AICGANYSIVDFLITAGANVNSPDS 85

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 96.6 bits (241), Expect = 1e-25
 Identities = 19/108 (17%), Positives = 31/108 (28%), Gaps = 7/108 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHSAASI--GNVTIV 97
            +    T LH AASC    +   L+     A  + A    +G            G     
Sbjct: 83  PDSHGWTPLHCAASCNDTVICMALVQHG--AA-IFATTLSDGATAFEKCDPYREGYADCA 139

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             L      + L N G   AL   +++     +         +  +D 
Sbjct: 140 TYLADVEQSMGLMNSGAVYALWDYSAEF-GDELSFREGESVTVLRRDG 186

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens} Length = 229

 Score = 75.8 bits (187), Expect = 7e-18
 Identities = 12/92 (13%), Positives = 27/92 (29%), Gaps = 6/92 (6%)

Query: 42  NDDDRTLLHVAASC--GHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
             D  T          G+ +    L  V++S   +  ++      +   ++      +  
Sbjct: 118 LSDGATAFEKCDPYREGYADCATYLADVEQS---MGLMNSGAVYALWDYSA-EFGDELSF 173

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
              +   V  ++    T   +AA  G    V 
Sbjct: 174 REGESVTVLRRDGPEETDWWWAALHGQEGYVP 205

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  124 bits (314), Expect = 2e-36
 Identities = 38/149 (25%), Positives = 62/149 (41%), Gaps = 12/149 (8%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSL----SKQQLLKSLSLRNDDDRTLLHVAASCGH 57
           D  ++D      L  A E G  ++   L    +   L   L   N +  T LH+A+  G+
Sbjct: 70  DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGY 129

Query: 58  PEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             +VE+L+S+   A+V NA +   G   +H A  + N  +V +LL  GADVN     G +
Sbjct: 130 LGIVELLVSLG--ADV-NAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYS 186

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDK 145
                  +   +I + L     +      
Sbjct: 187 PYQLTWGRPSTRIQQQLGQLTLENLQMLP 215

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score =  123 bits (310), Expect = 6e-36
 Identities = 40/150 (26%), Positives = 64/150 (42%), Gaps = 19/150 (12%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASCGHPEVV 61
             +D    L  A    + +    + +   +K     L+ +N+  +T LH+A     PE+ 
Sbjct: 4   LTEDGDSFLHLAIIHEEKALTMEVIR--QVKGDLAFLNFQNNLQQTPLHLAVITNQPEIA 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD------VNLKNDGGR 115
           E LL      +     D  G  P+H A   G +  V +L            +   N  G 
Sbjct: 62  EALLGA--GCD-PELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGH 118

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDK 145
           T LH A+  G+L IVELL+S GA +N+++ 
Sbjct: 119 TCLHLASIHGYLGIVELLVSLGADVNAQEP 148

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 92.2 bits (230), Expect = 6e-24
 Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 4/74 (5%)

Query: 76  AVDEEGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
            + E+G + +H A           ++  +    A +N +N+  +T LH A      +I E
Sbjct: 3   QLTEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAE 62

Query: 132 LLISRGAKINSKDK 145
            L+  G     +D 
Sbjct: 63  ALLGAGCDPELRDF 76

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E Length = 236

 Score = 89.9 bits (224), Expect = 3e-23
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             + RT LH+A    +P++V +LL     A+V N V  +G++P        +  I + L 
Sbjct: 148 PCNGRTALHLAVDLQNPDLVSLLLKCG--ADV-NRVTYQGYSPYQLTWGRPSTRIQQQLG 204

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVE 131
               +             Y     + +  E
Sbjct: 205 QLTLENLQMLPESEDEESYDTESEFTEFTE 234

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  124 bits (314), Expect = 8e-36
 Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             DD  +   A S G  E V  LL     A++ N  + +G   +H A    NV +V+ L+
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLERG--ADI-NYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GA++N  ++ G   LH AAS G+L I E LIS+GA + + + 
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNS 137

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (306), Expect = 1e-34
 Identities = 27/106 (25%), Positives = 44/106 (41%), Gaps = 4/106 (3%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
           + +   +    +    G    +E  +   +         ++G   +  A S G+   V  
Sbjct: 3   MADAKQKRNEQLKRWIGSETDLEPPVV--KRKK-TKVKFDDGAVFLA-ACSSGDTEEVLR 58

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           LL +GAD+N  N  G TALH A     + +V+ L+  GA IN  D 
Sbjct: 59  LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDN 104

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  121 bits (305), Expect = 2e-34
 Identities = 30/105 (28%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA+ G+ EV+++L+      +V N  D +GW P+H+AA  G      +L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQAR--YDV-NIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +    D+   N  G+TA   A       + EL   +    + K +
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADEDILGYLEELQKKQNLLHSEKRE 296

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  120 bits (304), Expect = 2e-34
 Identities = 26/144 (18%), Positives = 51/144 (35%), Gaps = 15/144 (10%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
                + +    L  A E       ++         ++ +  D              +  
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEELLQNE--------VNRQGVDIEAARKEEERIMLRDAR 182

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
           + L S     N      + G   +H AA+ G   ++++L+    DVN+K+  G T LH A
Sbjct: 183 QWLNSGH--IND-VRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAA 239

Query: 122 ASKGWLKIVELLISRGAKINSKDK 145
           A  G  +   +L+     + + +K
Sbjct: 240 AHWGKEEACRILVENLCDMEAVNK 263

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score =  119 bits (300), Expect = 1e-33
 Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 4/107 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N D  T LH A    + ++V+ L+     AN+ N  D EGW P+H+AAS G + I E L
Sbjct: 69  ANVDGLTALHQACIDDNVDMVKFLVENG--ANI-NQPDNEGWIPLHAAASCGYLDIAEYL 125

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKA 146
           +S+GA V   N  G T L  A  +   ++++  ++R G  I +  K 
Sbjct: 126 ISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKE 172

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 80.6 bits (200), Expect = 3e-19
 Identities = 19/72 (26%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +   D +          IG+ T +E  + K     +K D G      A S G  + V  L
Sbjct: 1   MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRL 59

Query: 134 ISRGAKINSKDK 145
           + RGA IN  + 
Sbjct: 60  LERGADINYANV 71

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1 Length = 299

 Score = 64.1 bits (157), Expect = 3e-13
 Identities = 16/73 (21%), Positives = 28/73 (38%), Gaps = 3/73 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ D  T LH AA  G  E   IL+      ++  AV++ G      A       + E+ 
Sbjct: 228 KDYDGWTPLHAAAHWGKEEACRILVENL--CDM-EAVNKVGQTAFDVADEDILGYLEELQ 284

Query: 101 LSKGADVNLKNDG 113
             +    + K + 
Sbjct: 285 KKQNLLHSEKREK 297

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score =  120 bits (303), Expect = 9e-36
 Identities = 24/106 (22%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHSAASIGNVTIVEM 99
            N   R  + V    G   V E+LL     A   N  D      P+H AA  G +  + +
Sbjct: 41  PNSYGRRPIQVMMM-GSARVAELLLLHG--AEP-NCADPATLTRPVHDAAREGFLDTLVV 96

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   GA +++++  GR  +  A   G   +   L +        + 
Sbjct: 97  LHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNH 142

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A Length = 156

 Score = 87.1 bits (217), Expect = 7e-23
 Identities = 17/92 (18%), Positives = 32/92 (34%), Gaps = 9/92 (9%)

Query: 41  RNDDDRTL-LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            +    T  +H AA  G  + + +L      A + +  D  G  P+  A  +G+  +   
Sbjct: 73  ADPATLTRPVHDAAREGFLDTLVVLHRAG--ARL-DVRDAWGRLPVDLAEELGHRDVARY 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
           L +           G       A++G   I +
Sbjct: 130 LRAAAGGTR-----GSNHARIDAAEGPSDIPD 156

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  123 bits (311), Expect = 1e-35
 Identities = 27/105 (25%), Positives = 52/105 (49%), Gaps = 5/105 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +    +  + A +  +  +V  LL+    A   N ++     P+H AA++ +  IV++L
Sbjct: 27  ADVHGHSASYYAIADNNVRLVCTLLN--AGALK-NLLE--NEFPLHQAATLEDTKIVKIL 81

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  G D +  +D G TAL+YA   G ++ V+L + +  ++    K
Sbjct: 82  LFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMFYGK 126

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  119 bits (301), Expect = 4e-34
 Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 5/103 (4%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           ++   LH AA+    ++V+ILL      +  +  D++G   ++ A   GN+  V++ + K
Sbjct: 61  ENEFPLHQAATLEDTKIVKILLFSG--LDD-SQFDDKGNTALYYAVDSGNMQTVKLFVKK 117

Query: 104 GADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
              +      G +T+ ++A     + IV   +S          
Sbjct: 118 NWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIP-STFDLA 159

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  118 bits (297), Expect = 2e-33
 Identities = 18/105 (17%), Positives = 34/105 (32%), Gaps = 5/105 (4%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               +T  + A       +V   LS  E  +          + IH     G+V ++ +LL
Sbjct: 126 KTGWKTSFYHAVMLNDVSIVSYFLS--EIPS--TFDLAILLSCIHITIKNGHVDMMILLL 181

Query: 102 SKGADVNLKNDGGRT-ALHYAASKGWLKIVELLISRGAKINSKDK 145
                 N  N       +  A     +++++ L      I S + 
Sbjct: 182 DYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKYDINIYSANL 226

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  109 bits (275), Expect = 3e-30
 Identities = 14/106 (13%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP-IHSAASIGNVTIVEM 99
                 + +H+    GH +++ +LL      +  N  +   + P I  A    ++ +++ 
Sbjct: 157 DLAILLSCIHITIKNGHVDMMILLLDYM--TS-TNTNNSLLFIPDIKLAIDNKDIEMLQA 213

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L     ++        +A          +I +++I +  +  S   
Sbjct: 214 LFKYDINIY-------SANLENVLLDDAEIAKMIIEKHVEYKSDSY 252

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score =  107 bits (271), Expect = 1e-29
 Identities = 26/99 (26%), Positives = 41/99 (41%), Gaps = 8/99 (8%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
            L  +       + ++  LS   S +     D  G +  + A +  NV +V  LL+ GA 
Sbjct: 3   DLSRIN--TWKSKQLKSFLS---SKDT-FKADVHGHSASYYAIADNNVRLVCTLLNAGAL 56

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            NL        LH AA+    KIV++L+  G   +  D 
Sbjct: 57  KNLLE--NEFPLHQAATLEDTKIVKILLFSGLDDSQFDD 93

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus} Length = 285

 Score = 76.8 bits (190), Expect = 8e-18
 Identities = 12/106 (11%), Positives = 31/106 (29%), Gaps = 12/106 (11%)

Query: 41  RNDDDRT-LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
            N       + +A      E+++ L   D   N+  + +            + +  I +M
Sbjct: 190 NNSLLFIPDIKLAIDNKDIEMLQALFKYD--INI-YSAN-------LENVLLDDAEIAKM 239

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++ K  +    +      +        +      + R   +N   K
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKEL-RLMYVNCVKK 284

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  121 bits (307), Expect = 1e-35
 Identities = 35/120 (29%), Positives = 52/120 (43%), Gaps = 15/120 (12%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS--VDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
           R     T LH+AA   + E   +L+    +     + +   EG   +H A    NV +V 
Sbjct: 33  RGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVR 92

Query: 99  MLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            LL++GA V+ +  G             G   L +AA  G  +IV LLI  GA I ++D 
Sbjct: 93  ALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDS 152

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  114 bits (288), Expect = 1e-32
 Identities = 24/104 (23%), Positives = 45/104 (43%), Gaps = 7/104 (6%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           + L +AA     + +  LL   E   V +     G   +H AA   N+    +L+    +
Sbjct: 5   SPLLLAAKENDVQALSKLL-KFEGCEV-HQRGAMGETALHIAALYDNLEAAMVLMEAAPE 62

Query: 107 V-----NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +       +   G+TALH A     + +V  L++RGA ++++  
Sbjct: 63  LVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARAT 106

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score =  110 bits (276), Expect = 6e-31
 Identities = 28/118 (23%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN------VVNAVDEEGWAPIHSAAS 90
              + +T LH+A    +  +V  LL+    V   A         + +   G  P+  AA 
Sbjct: 71  ELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAAC 130

Query: 91  IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKINSKD 144
           +G+  IV +L+  GAD+  ++  G T LH    +           LL+S     + K 
Sbjct: 131 VGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS 188

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus} Length = 232

 Score = 48.4 bits (116), Expect = 1e-07
 Identities = 6/33 (18%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDK 145
             + L  AA +  ++ + +LL   G +++ +  
Sbjct: 3   WESPLLLAAKENDVQALSKLLKFEGCEVHQRGA 35

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  123 bits (312), Expect = 5e-35
 Identities = 16/110 (14%), Positives = 47/110 (42%), Gaps = 2/110 (1%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESAN--VVNAVDEEGWAPIHSAASIGNVTIVE 98
           ++  D T L  A    + E +++++    S +   ++  +++G + +H A  I    +  
Sbjct: 169 KDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAM 228

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
             +  G DVN++++     L+ +     + + + L+ +      +    +
Sbjct: 229 RFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYH 278

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  121 bits (306), Expect = 4e-34
 Identities = 12/115 (10%), Positives = 37/115 (32%), Gaps = 10/115 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----------VDESANVVNAVDEEGWAPIHSAAS 90
            +++    L+++       + + LL              +   V          + +AA 
Sbjct: 240 EDNEHTVPLYLSVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAAD 299

Query: 91  IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                ++++L  K  +V    + G         K    +  + ++  A + ++ +
Sbjct: 300 PSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAPSAPVRTRSR 354

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  116 bits (294), Expect = 2e-32
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 5/101 (4%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +D++   +HVAA  G  + V  L+      +     +  G   +H A   G V   + L
Sbjct: 16  SDDENMEKIHVAARKGQTDEVRRLIETG--VSP-TIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
            S G   +L +  G+  +H A       +V  L+    +  
Sbjct: 73  ASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEGAKERG 111

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  112 bits (283), Expect = 9e-31
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 28/148 (18%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
                    +  A     +    +L        +    +  +    +   C   EV EI 
Sbjct: 79  HSLWHGQKPIHLAVMANKTDLVVAL--------VEGAKERGQMPESLLNECDEREVNEIG 130

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGN--VTIVEMLLSKGADVNLKNDGGRTALHYAA 122
                     +    +G   +H    +G   + ++++L+  GA    K+    T L  A 
Sbjct: 131 ---------SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAM 181

Query: 123 SKGWLKIVELLISR-----GAKINSKDK 145
                + ++L++         +++  +K
Sbjct: 182 EFRNREALDLMMDTVPSKSSLRLDYANK 209

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score =  104 bits (261), Expect = 1e-27
 Identities = 21/71 (29%), Positives = 28/71 (39%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
               D+E    IH AA  G    V  L+  G    ++N  G TALH A   G +   + L
Sbjct: 13  RIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYL 72

Query: 134 ISRGAKINSKD 144
            S G   +   
Sbjct: 73  ASVGEVHSLWH 83

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 93.4 bits (233), Expect = 1e-23
 Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 3/81 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                   +  AA     EV+++L        V       G              +  M 
Sbjct: 286 DRVVWLDFVPAAADPSKQEVLQLLQEKL--DEV-VRSLNTGAGGAVKRKKKAAPAVKRMK 342

Query: 101 LSKGADVNLKNDGGRTALHYA 121
           L+  A V  ++     +   +
Sbjct: 343 LAPSAPVRTRSRSRARSSAVS 363

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major} Length = 364

 Score = 69.1 bits (170), Expect = 7e-15
 Identities = 11/47 (23%), Positives = 17/47 (36%)

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           M      +    +D     +H AA KG    V  LI  G     +++
Sbjct: 5   MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTIQNR 51

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  120 bits (304), Expect = 6e-35
 Identities = 26/107 (24%), Positives = 45/107 (42%), Gaps = 4/107 (3%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-GWAPIHSAASIGNVTIVEM 99
            +++ RT L   A  G  + V +L      A++ +  D   G   +H AA      +VE 
Sbjct: 73  VDENGRTALLFVAGLGSDKCVRLLAEAG--ADL-DHRDMRGGLTALHMAAGYVRPEVVEA 129

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
           L+  GAD+ ++++ G TAL  A            +  G +I  +   
Sbjct: 130 LVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVI 176

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  112 bits (282), Expect = 1e-31
 Identities = 26/104 (25%), Positives = 42/104 (40%), Gaps = 7/104 (6%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             +      +    GH         +  +A+V      E   P  +AA   +   +  LL
Sbjct: 12  AGEGAMEYLIEWKDGHSPSWVPSSYI--AADV----VSEYETPWWTAARKADEQALSQLL 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            +  DV+  ++ GRTAL + A  G  K V LL   GA ++ +D 
Sbjct: 66  -EDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDM 108

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score =  104 bits (261), Expect = 1e-28
 Identities = 26/126 (20%), Positives = 40/126 (31%), Gaps = 25/126 (19%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
                T LH+AA    PEVVE L+ +   A++    DE G   +  A  I   T     +
Sbjct: 108 MRGGLTALHMAAGYVRPEVVEALVELG--ADI-EVEDERGLTALELAREILKTTPKGNPM 164

Query: 102 SKGADVNLKN---------------------DG-GRTALHYAASKGWLKIVELLISRGAK 139
             G  + L+                       G G+   +    K       +     A+
Sbjct: 165 QFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKGKDVEYLVRWKDGGDCEWVKGVHVAE 224

Query: 140 INSKDK 145
             +KD 
Sbjct: 225 DVAKDY 230

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 75.7 bits (187), Expect = 1e-17
 Identities = 12/73 (16%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
           + +    EG          G+           ADV  +     T    AA K   + +  
Sbjct: 7   IGSRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVVSE---YETPWWTAARKADEQALSQ 63

Query: 133 LISRGAKINSKDK 145
           L+     +++ D+
Sbjct: 64  LLE-DRDVDAVDE 75

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A Length = 244

 Score = 73.0 bits (180), Expect = 1e-16
 Identities = 9/104 (8%), Positives = 23/104 (22%), Gaps = 21/104 (20%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESANV---------------VNAVDEEG 81
            ++   T L +A            +     +     +               +     +G
Sbjct: 140 EDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKRGKG 199

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG 125
               +            +     A+   K+      L YA ++ 
Sbjct: 200 KDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAES 241

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  121 bits (307), Expect = 3e-34
 Identities = 27/100 (27%), Positives = 45/100 (45%), Gaps = 2/100 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                RT LH AA   +  +V+ L+  ++ +N  +  DE+G  PI  AA  G + +V  L
Sbjct: 275 EKYKGRTALHYAAQVSNMPIVKYLVG-EKGSNK-DKQDEDGKTPIMLAAQEGRIEVVMYL 332

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
           + +GA V   +    TA   A +     IV++      + 
Sbjct: 333 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRCRPER 372

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (304), Expect = 7e-34
 Identities = 35/153 (22%), Positives = 69/153 (45%), Gaps = 18/153 (11%)

Query: 9   IKDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           I +K     L +AA   D      + +  +L   +   + +  T L + A     + V  
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVAS 253

Query: 64  ---LLSVDESANV-------VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKND 112
              L+     A V        ++   +G   +H AA + N+ IV+ L+  KG++ + +++
Sbjct: 254 AKLLVEKG--AKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDE 311

Query: 113 GGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            G+T +  AA +G +++V  LI +GA + + D 
Sbjct: 312 DGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDA 344

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  120 bits (303), Expect = 9e-34
 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 10/114 (8%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS------VDESANVVNAVDEEGWAPIHSAASIGNV 94
               +RT+LH  AS    E  E L+       +   A+V NA+D +   P+  A      
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADV-NAMDCDENTPLMLAVLARRR 179

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS---RGAKINSKDK 145
            +V  L+  GAD  + N   R+ALH AA+     ++  +++       I   D+
Sbjct: 180 RLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDR 233

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  114 bits (288), Expect = 1e-31
 Identities = 26/153 (16%), Positives = 58/153 (37%), Gaps = 19/153 (12%)

Query: 10  KDKD----LFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASCGHPE 59
             +     L   A    +   + L   +  + ++        + D+ T L +A       
Sbjct: 121 DPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRR 180

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRT 116
           +V  L+     A+     ++   + +H AA+  +  ++  +L+      D+   +  G T
Sbjct: 181 LVAYLMKAG--ADP-TIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMT 237

Query: 117 ALHYAA---SKGWLKIVELLISRGAKINSKDKA 146
           AL   A    +  +   +LL+ +GAK++    A
Sbjct: 238 ALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAA 270

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score =  108 bits (272), Expect = 4e-29
 Identities = 20/114 (17%), Positives = 39/114 (34%), Gaps = 13/114 (11%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM 99
                           G+  + +   +      +    + E    +H+ A+ G+  I E 
Sbjct: 56  ELQHYSLYPNPQGYGNGNDFLGDFNHTNL---QIPTEPEPESPIKLHTEAA-GSYAITEP 111

Query: 100 LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI--------SRGAKINSKDK 145
           +  +  ++       RT LH+ AS    +  E LI        + GA +N+ D 
Sbjct: 112 ITRESVNIIDPRH-NRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDC 164

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 93.9 bits (234), Expect = 8e-24
 Identities = 14/103 (13%), Positives = 23/103 (22%), Gaps = 13/103 (12%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
               +  L  A+  G+ +               N +      P       GN  + +   
Sbjct: 34  ITSSQHSLLEASYDGYIKRQR------------NELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +               LH  A  G   I E +      I    
Sbjct: 82  TNLQIPTEPEPESPIKLHTEA-AGSYAITEPITRESVNIIDPR 123

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1 Length = 373

 Score = 61.1 bits (149), Expect = 6e-12
 Identities = 4/71 (5%), Positives = 12/71 (16%), Gaps = 9/71 (12%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +         +  A+  G +             N                G   + +   
Sbjct: 31  HQSITSSQHSLLEASYDGYIKRQR---------NELQHYSLYPNPQGYGNGNDFLGDFNH 81

Query: 135 SRGAKINSKDK 145
           +        + 
Sbjct: 82  TNLQIPTEPEP 92

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  118 bits (297), Expect = 4e-34
 Identities = 33/104 (31%), Positives = 55/104 (52%), Gaps = 3/104 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +  + ++A S    E+ E +L+    +      D++    +H A S G+  IVE LL
Sbjct: 4   CVSNIMICNLAYSGKLDELKERILADK--SLA-TRTDQDSRTALHWACSAGHTEIVEFLL 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G  VN K+D G + LH AAS G  +IV+ L+ +GA +N+ ++
Sbjct: 61  QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQ 104

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score =  101 bits (254), Expect = 1e-27
 Identities = 50/105 (47%), Positives = 62/105 (59%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            + D RT LH A S GH E+VE LL +     V N  D+ GW+P+H AAS G   IV+ L
Sbjct: 36  TDQDSRTALHWACSAGHTEIVEFLLQLG--VPV-NDKDDAGWSPLHIAASAGXDEIVKAL 92

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L KGA VN  N  G T LHYAASK   +I  +L+  GA  ++KD 
Sbjct: 93  LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDH 137

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 90.7 bits (225), Expect = 2e-23
 Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 11/146 (7%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPE 59
            ++   KD      L  AA  G     K+L  +     ++  N +  T LH AAS    E
Sbjct: 65  PVN--DKDDAGWSPLHIAASAGXDEIVKALLVKG--AHVNAVNQNGCTPLHYAASKNRHE 120

Query: 60  VVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
           +  +LL    +    +A D      +H AA+ GN+ +V +LL   A  N+++  G T LH
Sbjct: 121 IAVMLLEGGAN---PDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH 177

Query: 120 YAASKGWLKIVELLISRGAKINSKDK 145
            A  +  ++  + L+++GA I  ++K
Sbjct: 178 LACDEERVEEAKFLVTQGASIYIENK 203

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 86.8 bits (215), Expect = 5e-22
 Identities = 33/128 (25%), Positives = 57/128 (44%), Gaps = 7/128 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA          L +     +   ++  D T +H AA+ G+ ++V ILL    S   
Sbjct: 110 LHYAASKNRHEIAVMLLEGG--ANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKAS--- 164

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
            N  D EG  P+H A     V   + L+++GA + ++N   +T L  A   G L ++   
Sbjct: 165 TNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQVAK--GGLGLILKR 222

Query: 134 ISRGAKIN 141
           ++ G + +
Sbjct: 223 LAEGEEAS 230

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 56.4 bits (136), Expect = 1e-10
 Identities = 19/108 (17%), Positives = 45/108 (41%), Gaps = 7/108 (6%)

Query: 2   DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           + D         + +AA  G+      L   +   S ++++ +  T LH+A      E  
Sbjct: 131 NPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--ASTNIQDTEGNTPLHLACDEERVEEA 188

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           + L++   S   +   ++E   P+  A   G + ++   L++G + ++
Sbjct: 189 KFLVTQGAS---IYIENKEEKTPLQVAK--GGLGLILKRLAEGEEASM 231

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A Length = 231

 Score = 53.3 bits (128), Expect = 1e-09
 Identities = 4/36 (11%), Positives = 12/36 (33%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                    + A S    ++ E +++  +     D+
Sbjct: 3   GCVSNIMICNLAYSGKLDELKERILADKSLATRTDQ 38

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score =  107 bits (270), Expect = 2e-31
 Identities = 28/94 (29%), Positives = 46/94 (48%), Gaps = 6/94 (6%)

Query: 52  AASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN 111
            +S  H      L+     +++      +    +  AA  G    V +L++ GADV  K+
Sbjct: 1   GSSHHHHHHSSGLVPRG--SHM----GSDLGKKLLEAARAGQDDEVRILMANGADVAAKD 54

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             G T LH AA  G L++V+LL+  GA + ++DK
Sbjct: 55  KNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDK 88

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 98.8 bits (247), Expect = 6e-28
 Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 3/92 (3%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             D    L  AA  G  + V IL++    A+V  A D+ G  P+H AA  G++ +V++LL
Sbjct: 21  GSDLGKKLLEAARAGQDDEVRILMANG--ADV-AAKDKNGSTPLHLAARNGHLEVVKLLL 77

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
             GADV  ++  G+TA   +   G   + E+L
Sbjct: 78  EAGADVXAQDKFGKTAFDISIDNGNEDLAEIL 109

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A Length = 110

 Score = 53.3 bits (129), Expect = 3e-10
 Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 3/60 (5%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++ +  T LH+AA  GH EVV++LL     A+ V A D+ G      +   GN  + E+L
Sbjct: 53  KDKNGSTPLHLAARNGHLEVVKLLLEAG--AD-VXAQDKFGKTAFDISIDNGNEDLAEIL 109

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  107 bits (270), Expect = 1e-30
 Identities = 21/118 (17%), Positives = 40/118 (33%), Gaps = 16/118 (13%)

Query: 41  RNDDDRTLLHVAASCGH------PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNV 94
           R  +  TL       G        E+ +I L  ++ A++  A+ +     +        V
Sbjct: 71  RTKEGTTLFFPLFQGGGNDITGTTELCKIFL--EKGADI-TALYKPYKIVVFKNIFNYFV 127

Query: 95  TIVEM-------LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
              EM           G  + +K+  G TAL +         ++++     K N K+ 
Sbjct: 128 DENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKEN 185

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score =  101 bits (254), Expect = 4e-28
 Identities = 18/108 (16%), Positives = 34/108 (31%), Gaps = 6/108 (5%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
            +   +  AA  G  E    L                 +  + +        I   L++K
Sbjct: 5   SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64

Query: 104 GADVNLKNDGGRTALHYAASKG------WLKIVELLISRGAKINSKDK 145
           GAD+  +   G T        G        ++ ++ + +GA I +  K
Sbjct: 65  GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYK 112

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis} Length = 186

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 14/85 (16%)

Query: 4   DIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKS-----LSLRNDDDRTLLHVAAS 54
           DI      K     +FK          + +   +L+ S     L +++    T L     
Sbjct: 106 DIT--ALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKR 163

Query: 55  CGHPEVVEILLSVDESANVVNAVDE 79
           C  P  ++++   D      N  + 
Sbjct: 164 CQKPIALKMME--DYIKK-YNLKEN 185

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  106 bits (266), Expect = 3e-29
 Identities = 32/165 (19%), Positives = 53/165 (32%), Gaps = 33/165 (20%)

Query: 14  LFKAAETGDSSTFKSL------SKQQLLKSLSLRNDDDRTLLHVAA---SCGHPEVVEIL 64
           LF     G       L      + + L  S        +T L  A      G    +  L
Sbjct: 6   LFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPL 65

Query: 65  LSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG--- 113
           L +D+ +                +G + +H A    ++  V++L+  GADV+L+  G   
Sbjct: 66  LQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF 125

Query: 114 ----------GRTALHYAASKGWLKIVELLISRG---AKINSKDK 145
                     G   L  AA      +V  L+      A + + D 
Sbjct: 126 QKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDS 170

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score =  103 bits (258), Expect = 4e-28
 Identities = 23/124 (18%), Positives = 38/124 (30%), Gaps = 16/124 (12%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI---------- 91
                  L +AA     +VV  LL        + A D  G   +H+   I          
Sbjct: 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 192

Query: 92  ------GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
                 G + +   L        + N  G T L  AA +G ++I   ++ R     +   
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGAAAHH 252

Query: 146 ACNF 149
             + 
Sbjct: 253 HHHH 256

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A Length = 256

 Score = 84.8 bits (210), Expect = 6e-21
 Identities = 28/124 (22%), Positives = 41/124 (33%), Gaps = 19/124 (15%)

Query: 45  DRTLLHVAASCGHPEVVEILL-----SVDESANVVNAVDEEGWAPIHSAA---SIGNVTI 96
           DR  L    S G PE +  LL     +     +        G   +  A      G    
Sbjct: 2   DRDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNAC 61

Query: 97  VEMLLSKG-----------ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           +  LL              A    +   G +ALH A  K  L+ V+LL+  GA ++ +  
Sbjct: 62  IMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRAC 121

Query: 146 ACNF 149
              F
Sbjct: 122 GRFF 125

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score =  103 bits (258), Expect = 5e-28
 Identities = 37/170 (21%), Positives = 50/170 (29%), Gaps = 38/170 (22%)

Query: 12  KDLFKAAETGDSSTFKSLSKQQLLKSL--------SLRNDDDRTLLHVAA---SCGHPEV 60
             LF     G     + L     L +                +T L  A    S G  + 
Sbjct: 7   PILFDIVSRGSPDGLEGLLS--FLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 61  VEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND 112
           + ILL + E               V   G   +H A        VE+L+ KGADV+ +  
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 113 G--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDK 145
           G              G   L  AA      IV  L   G   A +  +D 
Sbjct: 125 GRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDS 174

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 99.9 bits (249), Expect = 1e-26
 Identities = 24/116 (20%), Positives = 41/116 (35%), Gaps = 16/116 (13%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN---------VTI 96
              L +AA    P +V  L         +   D  G   +H+  +I +           +
Sbjct: 141 ELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM 200

Query: 97  VEMLLSKGADVN-------LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            ++LL K A +        L N+ G + L  AA  G + I + +I R     +   
Sbjct: 201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIRREIADAAAHH 256

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 88.7 bits (220), Expect = 2e-22
 Identities = 29/131 (22%), Positives = 43/131 (32%), Gaps = 23/131 (17%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS----VDESAN-------VVNAVDEEGWAPIHSAA 89
                +T LH+A        VE+L+     V   A                G  P+  AA
Sbjct: 89  VYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAA 148

Query: 90  SIGNVTIVEMLLSKG---ADVNLKNDGGRTALHYAA---------SKGWLKIVELLISRG 137
                 IV  L   G   AD+  ++  G T LH            +K   K+ +LL+ + 
Sbjct: 149 CTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKC 208

Query: 138 AKINSKDKACN 148
           AK+        
Sbjct: 209 AKLFPDTNLEA 219

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A Length = 260

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 25/124 (20%), Positives = 43/124 (34%), Gaps = 19/124 (15%)

Query: 45  DRTLLHVAASCG----HPEVVEILLSVDESANVVNAV-DEEGWAPIHSAA---SIGNVTI 96
           +R +L    S G       ++  LL+  +            G   +  A    S G    
Sbjct: 5   NRPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT 64

Query: 97  VEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + +LL                       G+TALH A  +     VELL+ +GA ++++ +
Sbjct: 65  IPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQAR 124

Query: 146 ACNF 149
              F
Sbjct: 125 GRFF 128

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score =  102 bits (255), Expect = 2e-27
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 40/177 (22%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-------RTLLHVA---A 53
             D+      +F A    +    +SL    L +S     D +       +T L  A    
Sbjct: 11  LYDRRS----IFDAVAQSNCQELESL-LPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNL 65

Query: 54  SCGHPEVVEILLSVDESANV--------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
             G  + + +LL V    +               +G   +H A    N+T+V +L+  GA
Sbjct: 66  HNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGA 125

Query: 106 DVNLKNDG--------------GRTALHYAASKGWLKIVELLISRG---AKINSKDK 145
           DV    +G              G   L  AA    L IV+ L+      A I+++D 
Sbjct: 126 DVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDS 182

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 92.9 bits (231), Expect = 6e-24
 Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 16/112 (14%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEM------ 99
              L +AA      +V+ LL        ++A D  G   +H+   + + T+         
Sbjct: 149 ELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSM 208

Query: 100 ----------LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
                     L        + N  G T L  AAS G + ++  ++ R     
Sbjct: 209 YNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEP 260

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 89.8 bits (223), Expect = 8e-23
 Identities = 23/123 (18%), Positives = 40/123 (32%), Gaps = 19/123 (15%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDES-----ANVVNAVDEEGWAPIHSAASI---GN 93
              DR  +  A +  + + +E LL   +       +      E G   +  A      G 
Sbjct: 10  RLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQ 69

Query: 94  VTIVEMLLSKGAD-----------VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS 142
              + +LL                       G+TALH A  +  + +V LL+  GA + +
Sbjct: 70  NDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQA 129

Query: 143 KDK 145
              
Sbjct: 130 AAN 132

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 72.9 bits (179), Expect = 2e-16
 Identities = 22/126 (17%), Positives = 37/126 (29%), Gaps = 21/126 (16%)

Query: 14  LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL------- 65
           L  AA T   +  K L         +S R+    T+LH         V            
Sbjct: 152 LSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNE 211

Query: 66  ------SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH 119
                  +  +  +    + +G  P+  AAS G + ++  +L +               H
Sbjct: 212 ILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIH-------EPECRH 264

Query: 120 YAASKG 125
            AA   
Sbjct: 265 AAAHHH 270

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 61.0 bits (148), Expect = 4e-12
 Identities = 18/85 (21%), Positives = 27/85 (31%), Gaps = 11/85 (12%)

Query: 75  NAVDEEGWAPIHSAASIGNVTIVEMLL-------SKGADVNLK-NDGGRTALHYA---AS 123
                     I  A +  N   +E LL        +  D   K  + G+T L  A     
Sbjct: 7   KPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLH 66

Query: 124 KGWLKIVELLISRGAKINSKDKACN 148
            G    + LL+    K +S  +  N
Sbjct: 67  NGQNDTIALLLDVARKTDSLKQFVN 91

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 43.6 bits (103), Expect = 6e-06
 Identities = 17/106 (16%), Positives = 32/106 (30%), Gaps = 28/106 (26%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSL--------------SLRNDDDRT 47
           D + +D      L    E  D++   +     +   +               + N    T
Sbjct: 176 DISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLT 235

Query: 48  LLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGN 93
            L +AAS G   V+  +L  +   +             H+AA   +
Sbjct: 236 PLALAASSGKIGVLAYILQRE--IH--------EPECRHAAAHHHH 271

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A* Length = 273

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 8/52 (15%), Positives = 14/52 (26%), Gaps = 7/52 (13%)

Query: 102 SKGADVNLKNDGGRTALHYAASKG-------WLKIVELLISRGAKINSKDKA 146
           S  A         R ++  A ++         L  ++    R      KD  
Sbjct: 1   SVSAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPE 52

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 88.2 bits (218), Expect = 8e-22
 Identities = 23/108 (21%), Positives = 41/108 (37%), Gaps = 6/108 (5%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              ++   HV+      EV +   +     N+   VDE G  P+H   SI N+ +V+ L+
Sbjct: 94  GSSNQQQQHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLV 151

Query: 102 SKGADVNLKNDGGRTALHYAASKG----WLKIVELLISRGAKINSKDK 145
             G++    ++ G + L  A              LL      +  +D 
Sbjct: 152 KHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDS 199

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 81.2 bits (200), Expect = 3e-19
 Identities = 22/87 (25%), Positives = 41/87 (47%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT 95
           + +    ++  +  +         ++E L      AN++NA D  G   ++ AA +GN++
Sbjct: 238 RPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNIS 297

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAA 122
           IV+ LL  GAD  + N  G   + + A
Sbjct: 298 IVDALLDYGADPFIANKSGLRPVDFGA 324

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 78.5 bits (193), Expect = 3e-18
 Identities = 32/156 (20%), Positives = 56/156 (35%), Gaps = 19/156 (12%)

Query: 9   IKDKD----LFKAAETGDSSTFKSLSK--QQLLKSLSLRNDDDRTLLHVAASC----GHP 58
             D      L KA ++ ++    +       L   L L +  +RT+LH         G  
Sbjct: 159 YGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCS 218

Query: 59  EVVEILLS------VDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK---GADVNL 109
              +  L       V +    + +   E  +  +        +I+E L  K      +N 
Sbjct: 219 AAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNA 278

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           ++  G T L+ AA  G + IV+ L+  GA     +K
Sbjct: 279 QDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK 314

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1 Length = 327

 Score = 38.1 bits (88), Expect = 4e-04
 Identities = 9/95 (9%), Positives = 28/95 (29%), Gaps = 1/95 (1%)

Query: 50  HVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL 109
           H   S      ++I+ ++       N    +  A +          +   L +  ++ N 
Sbjct: 32  HDLTSDFLSSPLKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNS 91

Query: 110 KNDGGRTALHYAASKGWLK-IVELLISRGAKINSK 143
           +         + +    L+ + +   +    +N  
Sbjct: 92  EGGSSNQQQQHVSFDSLLQEVNDAFPNTQLNLNIP 126

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 80.4 bits (198), Expect = 3e-19
 Identities = 21/98 (21%), Positives = 41/98 (41%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTI 96
            L+  ++ D T LH+A        + I+  + +++  ++    +G   +H      N   
Sbjct: 161 PLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAEC 220

Query: 97  VEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           +++LL   A + + N+ G T L  A         ELL 
Sbjct: 221 LKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1 Length = 278

 Score = 63.5 bits (154), Expect = 6e-13
 Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 3/72 (4%)

Query: 78  DEEGWAPIHSAASIGN---VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
            E     +H A    +   + IV+ L+    +++ +   G TALHY       + ++LL+
Sbjct: 166 HEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL 225

Query: 135 SRGAKINSKDKA 146
              A I   +++
Sbjct: 226 RGKASIEIANES 237

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 76.1 bits (187), Expect = 3e-17
 Identities = 17/144 (11%), Positives = 34/144 (23%), Gaps = 2/144 (1%)

Query: 5   IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           I   + +          + S      K+ +   L    + ++    +     H       
Sbjct: 21  IPWILWENLFQHFISANELSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQ 80

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK 124
           L     A+      E              +  + +LL+    V +       A   AA  
Sbjct: 81  LW--SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN 138

Query: 125 GWLKIVELLISRGAKINSKDKACN 148
           G L ++  L               
Sbjct: 139 GHLHVLNRLCELAPTEIMAMIQAE 162

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 75.8 bits (186), Expect = 4e-17
 Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 11/152 (7%)

Query: 2   DMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH 57
             D    +   +       AAE G       L +    + +++   ++     +AA  GH
Sbjct: 116 TSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGH 175

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA 117
             V+  L  +  +        E  +A   +A   G+  ++  LL     +          
Sbjct: 176 LHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEI----- 230

Query: 118 LHYAASKGWLKIVELLISRGAKINSKDKACNF 149
             +    G   +   +     ++     A   
Sbjct: 231 --HEFEYGEKYVNPFIARHVNRLKEMHDAFKL 260

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 63.4 bits (154), Expect = 8e-13
 Identities = 10/97 (10%), Positives = 29/97 (29%), Gaps = 8/97 (8%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANV-----VNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +L          +++ +  +     +        +  +    +  A  +GN     +LL
Sbjct: 280 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLL 339

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           S  + + L         +   + G L +  + +    
Sbjct: 340 SIPSVLALTKANN---YYINETGGRLDLRAVALEHHH 373

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 61.9 bits (150), Expect = 3e-12
 Identities = 11/121 (9%), Positives = 31/121 (25%), Gaps = 20/121 (16%)

Query: 33  QLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG 92
             +     R  +      ++   G  ++V              +   +G+  + +     
Sbjct: 242 PFIARHVNRLKEMHDAFKLSNPDGVFDLVT------------KSECLQGFYMLRNLIRRN 289

Query: 93  NVTIVEML--------LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           +  +++ +        +   A            L  A   G      LL+S  + +    
Sbjct: 290 DEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTK 349

Query: 145 K 145
            
Sbjct: 350 A 350

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 46.5 bits (110), Expect = 7e-07
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 6/81 (7%)

Query: 28  SLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS 87
           S+   + L   +    D   LL +A   G+     +LLS+     +  A         + 
Sbjct: 302 SIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPSVLALTKA------NNYYI 355

Query: 88  AASIGNVTIVEMLLSKGADVN 108
             + G + +  + L      +
Sbjct: 356 NETGGRLDLRAVALEHHHHHH 376

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1 Length = 376

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 13/145 (8%), Positives = 30/145 (20%), Gaps = 38/145 (26%)

Query: 29  LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA 88
                   +  ++ ++       A   GH  V+  LL       +  A            
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCP--VMLAYAEIH--------E 232

Query: 89  ASIGNVTIVEMLLSKGADVNLKND--------------------GGRTALHYAASKGWLK 128
              G   +   +      +   +D                     G   L     +    
Sbjct: 233 FEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEV 292

Query: 129 IVELL--------ISRGAKINSKDK 145
           +++ +        I   A   +   
Sbjct: 293 LLDDIRFLLSIPGIKALAPTATIPG 317

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens} Length = 301

 Score = 73.9 bits (181), Expect = 1e-16
 Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 8/114 (7%)

Query: 42  NDDDRTLLHVAASCGHP---EVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVE 98
              +  +LH+A    +     +V+ ++      ++ +A   +G   +H AA       ++
Sbjct: 187 QAPEELVLHLAVKVANQASLPLVDFIIQ--NGGHL-DAKAADGNTALHYAALYNQPDCLK 243

Query: 99  MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
           +LL   A V   N+ G TAL  A  K   +  ELL    A+  +     +  Y 
Sbjct: 244 LLLKGRALVGTVNEAGETALDIARKKHHKECEELL--EQAQAGTFAFPLHVDYS 295

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 71.0 bits (173), Expect = 2e-15
 Identities = 28/128 (21%), Positives = 43/128 (33%), Gaps = 3/128 (2%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
                      +       T           +      D+ T L  A +       E LL
Sbjct: 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLL 255

Query: 66  SVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG 125
              ++   VN  D  G  P+H A  +G+  +  + L +GAD+  ++  GR  L  A    
Sbjct: 256 ---QNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETA 312

Query: 126 WLKIVELL 133
              IV LL
Sbjct: 313 NADIVTLL 320

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} Length = 368

 Score = 62.9 bits (152), Expect = 1e-12
 Identities = 25/105 (23%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                  L   +        +   L+     N VN   ++   P+  A +  ++   E L
Sbjct: 196 SLHPGALLFRASGHPPSLPTMADALAHGADVNWVNG-GQDNATPLIQATAANSLLACEFL 254

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L  GA+VN  +  GR  LH+A   G   +  L + RGA + ++D 
Sbjct: 255 LQNGANVNQADSAGRGPLHHATILGHTGLACLFLKRGADLGARDS 299

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E* Length = 497

 Score = 59.5 bits (144), Expect = 2e-11
 Identities = 21/109 (19%), Positives = 45/109 (41%), Gaps = 5/109 (4%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASI---GNVTIV 97
            + + L     +     V+E   +  +    +   D        +H A  +    ++ +V
Sbjct: 131 PEPQRLWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLV 190

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKA 146
           + ++  G  ++ K   G TALHYAA       ++LL+   A + + ++A
Sbjct: 191 DFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEA 239

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	152
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	100.0
4gpm_A	169	Engineered protein OR264; de novo protein, structu	100.0
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	100.0
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	100.0
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	100.0
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	100.0
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	100.0
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	100.0
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	100.0
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	100.0
3v30_A	172	DNA-binding protein rfxank; structural genomics co	100.0
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	100.0
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	100.0
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	100.0
3hra_A	201	Ankyrin repeat family protein; structural protein;	100.0
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	100.0
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	100.0
2rfa_A	232	Transient receptor potential cation channel subfa	100.0
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	100.0
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	99.98
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.98
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	99.98
2rfa_A	232	Transient receptor potential cation channel subfa	99.98
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.98
3v30_A	172	DNA-binding protein rfxank; structural genomics co	99.98
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	99.98
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	99.98
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.98
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.98
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	99.97
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.97
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	99.97
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.97
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	99.97
3hra_A	201	Ankyrin repeat family protein; structural protein;	99.97
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.97
2etb_A	256	Transient receptor potential cation channel subfam	99.97
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	99.97
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	99.97
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.97
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	99.97
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	99.97
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	99.97
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.97
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	99.97
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.97
2pnn_A	273	Transient receptor potential cation channel subfa	99.97
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	99.97
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	99.97
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.97
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.97
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	99.96
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	99.96
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	99.96
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	99.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	99.96
2pnn_A	273	Transient receptor potential cation channel subfa	99.96
3jxi_A	260	Vanilloid receptor-related osmotically activated p	99.96
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	99.96
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	99.96
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.96
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.96
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	99.96
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	99.95
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.95
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	99.95
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.95
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.95
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.95
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	99.95
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	99.94
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	99.94
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	99.94
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.94
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.94
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	99.94
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.93
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.93
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.93
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.93
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	99.93
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	99.93
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	99.92
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	99.92
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	99.92
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	99.9
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	99.9
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	99.9
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.89
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	99.88
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	99.87
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.87
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	99.86
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.85
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	99.84
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	99.82
1gp8_A	40	Protein (scaffolding protein); coat protein-bindin	84.36

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=2.8e-35  Score=181.93  Aligned_cols=136  Identities=43%  Similarity=0.642  Sum_probs=112.9

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      +.|+.|++.|+.+.|+.|++.+  .+++.++..|.||||+|+..++.++++++++.+.+   ++.++..|.||||+|+..
T Consensus         6 ~~L~~Aa~~G~~~~v~~Ll~~G--advn~~d~~g~t~l~~a~~~~~~~~~~~ll~~gad---~~~~d~~g~TpLh~A~~~   80 (169)
T 4gpm_A            6 KRLIEAAENGNKDRVKDLIENG--ADVNASDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDGRTPLHHAAEN   80 (169)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccc---hhhhccCCCCHHHHHHHc
Confidence            4688888888888888888876  57777888888888888888888888888887777   566777888888888888


Q ss_pred             CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus        81 g~~~~v~~Ll~~gadvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  141 (169)
T 4gpm_A           81 GHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLD  141 (169)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCHHHHHHHHHCcCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            8888888888888888888888888888888888888888888888888888888888875

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=100.00  E-value=8.6e-35  Score=191.88  Aligned_cols=146  Identities=31%  Similarity=0.384  Sum_probs=139.6

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||+++|+..++.+++++|++.+.+   ++.+|..|
T Consensus        78 dvn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~--a~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~g~~---~n~~d~~g  152 (269)
T 4b93_B           78 GVNVTSQDGSSPLHVAALHGRADLIPLLLKHG--ANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAK---PNKKDLSG  152 (269)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTC
T ss_pred             CCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcC--CCcCccCCCCCCccccccccChHHHHHHHHHCCCC---CCCCCCCC
Confidence            67888999999999999999999999999987  67888899999999999999999999999999887   67788999


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..|+.+++++|++.|++++..+..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       153 ~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~  223 (269)
T 4b93_B          153 NTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLLLHGASVQVLNKRQRTAVD  223 (269)
T ss_dssp             CCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCSGG
T ss_pred             CCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999996

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=100.00  E-value=7.1e-34  Score=175.63  Aligned_cols=136  Identities=38%  Similarity=0.556  Sum_probs=125.1

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|||+.|+..++.+.++.|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus        29 dvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g--ad~~~~d~~g~TpLh~A~~~g~~~~v~~Ll~~gad---vn~~d~~G  103 (169)
T 4gpm_A           29 DVNASDSDGRTPLHHAAENGHKEVVKLLISKG--ADVNAKDSDGRTPLHHAAENGHKEVVKLLISKGAD---VNAKDSDG  103 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc--cchhhhccCCCCHHHHHHHcCCHHHHHHHHHCcCC---CCCCCCCC
Confidence            78889999999999999999999999999987  67889999999999999999999999999999988   67888999


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~  142 (152)
                      .||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..++.+++++|+++|++++.
T Consensus       104 ~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GA~ie~  164 (169)
T 4gpm_A          104 RTPLHHAAENGHKEVVKLLISKGADVNTSDSDGRTPLDLAREHGNEEVVKLLEKQGGWLEH  164 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcCC
Confidence            9999999999999999999999999999999999999999999999999999999999865

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=100.00  E-value=1.6e-33  Score=177.29  Aligned_cols=145  Identities=26%  Similarity=0.266  Sum_probs=137.2

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ++..+..|.|+|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.
T Consensus        28 ~n~~d~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  102 (192)
T 2rfm_A           28 RNYRDSYNRTPLMVACMLGMENAIDKLVENF--DKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSN---VNTKDFSGK  102 (192)
T ss_dssp             HTCCCTTCCCHHHHHHHHTCGGGHHHHHHHH--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTSC
T ss_pred             HhCcCCCCCCHHHHHHHcCCHHHHHHHHHhc--cccccccccCccHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCC
Confidence            4667889999999999999999999999987  57788899999999999999999999999999887   677788999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||||+|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus       103 t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  172 (192)
T 2rfm_A          103 TPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEA  172 (192)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             cHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=100.00  E-value=3.2e-33  Score=172.10  Aligned_cols=143  Identities=34%  Similarity=0.429  Sum_probs=132.8

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..+.++|+.|++.|+.+.+++|++.+ ...+...+..|.||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus         4 ~~~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L   79 (165)
T 3twr_A            4 GNSEADRQLLEAAKAGDVETVKKLCTVQ-SVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHGAD---VHAKDKGGLVPL   79 (165)
T ss_dssp             --CHHHHHHHHHHHHTCHHHHHHHCCTT-TTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred             CcchhhHHHHHHHHhCCHHHHHHHHHcC-CCCccccccCCCCHHHHHHHcChHHHHHHHHhcCCC---CCccCCCCCCHH
Confidence            4667889999999999999999999865 366777888899999999999999999999999887   677788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        80 ~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  146 (165)
T 3twr_A           80 HNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLD  146 (165)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGG
T ss_pred             HHHHHcCcHHHHHHHHhCCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhH
Confidence            9999999999999999999999999999999999999999999999999999999999999999986

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=100.00  E-value=9.8e-33  Score=170.20  Aligned_cols=139  Identities=25%  Similarity=0.285  Sum_probs=131.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      .+.|+|+.|+..|+.+.+++|++.+  ..++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||.|
T Consensus         2 ~~~t~L~~A~~~g~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   76 (167)
T 3v31_A            2 ANSLSVHQLAAQGEMLYLATRIEQE--NVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGAD---PQLLGKGRESALSLA   76 (167)
T ss_dssp             TTCCCHHHHHHTTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             CCcchHHHHHHCCCHHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCcCCCCCcHHHHH
Confidence            4689999999999999999999987  67888999999999999999999999999998877   667788999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        77 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  140 (167)
T 3v31_A           77 CSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMD  140 (167)
T ss_dssp             HHHTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999985

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=100.00  E-value=3.3e-32  Score=169.65  Aligned_cols=141  Identities=28%  Similarity=0.361  Sum_probs=129.9

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      ..+.++|+.|+..|+.+.+++|++.+ +..++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||+
T Consensus         3 ~~~~~~l~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~   78 (179)
T 3f6q_A            3 PEFMDDIFTQCREGNAVAVRLWLDNT-ENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGAR---INVMNRGDDTPLHL   78 (179)
T ss_dssp             ----CCHHHHHHHTCHHHHHHHHHCT-TSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHhcC-cccccccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCCHHHH
Confidence            34678999999999999999999985 367888999999999999999999999999999887   67778899999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        79 A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  143 (179)
T 3f6q_A           79 AASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVD  143 (179)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGG
T ss_pred             HHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHH
Confidence            99999999999999999999999999999999999999999999999999999999999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=100.00  E-value=2.3e-32  Score=168.94  Aligned_cols=141  Identities=39%  Similarity=0.554  Sum_probs=131.6

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~   86 (152)
                      ...+.++|+.|++.|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||
T Consensus        11 ~~~~~~~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~   85 (169)
T 2y1l_E           11 GSDLGKKLLEAARAGRDDEVRILMANG--ADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGAD---VNAVDHAGMTPLR   85 (169)
T ss_dssp             --CHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHH
T ss_pred             CCcccchHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHH
Confidence            345678999999999999999999987  67888899999999999999999999999998877   6777889999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        86 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~  151 (169)
T 2y1l_E           86 LAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFD  151 (169)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999985

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=100.00  E-value=2.4e-32  Score=176.93  Aligned_cols=149  Identities=29%  Similarity=0.342  Sum_probs=136.7

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCC---ccccccC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESA---NVVNAVD   78 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~---~~~~~~~   78 (152)
                      +++..+..|.|||+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|+..+...   ...+..+
T Consensus        37 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~  114 (236)
T 1ikn_D           37 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  114 (236)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             HhhccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccC
Confidence            57778889999999999999999999999987  678888999999999999999999999999987642   2246667


Q ss_pred             CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCC-CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..|.||||+|+..++.+++++|++.|++++..+. .|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus       115 ~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  189 (236)
T 1ikn_D          115 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ  189 (236)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHH
Confidence            8899999999999999999999999999999987 8999999999999999999999999999999999999986

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=100.00  E-value=6.6e-32  Score=174.14  Aligned_cols=146  Identities=27%  Similarity=0.320  Sum_probs=103.1

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|||+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   .+..+..|
T Consensus        65 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  139 (231)
T 3aji_A           65 PVNDKDDAGWSPLHIAASAGXDEIVKALLVKG--AHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGAN---PDAKDHYD  139 (231)
T ss_dssp             CSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence            44555566666666666666666666666665  45556666667777777777777777777766655   45556667


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||.|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.++..|.||||
T Consensus       140 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  210 (231)
T 3aji_A          140 ATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQ  210 (231)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777764

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=100.00  E-value=7.5e-32  Score=173.51  Aligned_cols=144  Identities=26%  Similarity=0.302  Sum_probs=115.5

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..|.++|+.|+..|+.+++++|++.+...+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus        68 ~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L  144 (228)
T 2dzn_A           68 PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGAS---VRIKDKFNQIPL  144 (228)
T ss_dssp             CCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTSCCHH
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcccccCCcCCCCHHHHHHHcCCHhHHHHHHHcCCC---ccccCCCCCCHH
Confidence            45667788888888888888888877764456677777788888888888888888888877766   566677888888


Q ss_pred             HHHHhcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHH-hcCCCCCCccccccccCC
Q 031838           86 HSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLI-SRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll-~~g~~~~~~~~~~~t~l~  152 (152)
                      |+|+..++.+++++|++.| .+++.++..|.|||++|+..++.+++++|+ ++|++++.+|..|.||||
T Consensus       145 ~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~~ga~~~~~~~~g~t~l~  213 (228)
T 2dzn_A          145 HRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED  213 (228)
T ss_dssp             HHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCBCTTSCBGGG
T ss_pred             HHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCcHHH
Confidence            8888888888888888887 888888888888888888888888888888 788888888888888875

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=100.00  E-value=3.5e-32  Score=168.43  Aligned_cols=138  Identities=23%  Similarity=0.299  Sum_probs=91.9

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      .++|+.|+..|+.+.+++|++.+ ...++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~   78 (172)
T 3v30_A            3 SLSIHQLAAQGELDQLKEHLRKG-DNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD---PHILAKERESALSLAST   78 (172)
T ss_dssp             -CCHHHHHHTTCHHHHHHHHTTC-SGGGGCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHHcC-cccccCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---chhhcccCCCHHHHHHH
Confidence            35667777777777777766665 233556666666777777777777777777666655   45555666677777777


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        79 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  140 (172)
T 3v30_A           79 GGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMD  140 (172)
T ss_dssp             TTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            77777777777666666666666667777777777777777777777777666666766654

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=100.00  E-value=1.4e-31  Score=178.51  Aligned_cols=149  Identities=24%  Similarity=0.344  Sum_probs=135.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccc------
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN------   75 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~------   75 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+....+      
T Consensus        65 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~  142 (299)
T 1s70_B           65 DINYANVDGLTALHQACIDDNVDMVKFLVENG--ANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTP  142 (299)
T ss_dssp             CTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCcccCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCCCcCCCCCCH
Confidence            67778889999999999999999999999987  6788889999999999999999999999999877643211      


Q ss_pred             ---------------------------------------------------ccCCCCChhhHHHHhcCCHHHHHHHHHcC
Q 031838           76 ---------------------------------------------------AVDEEGWAPIHSAASIGNVTIVEMLLSKG  104 (152)
Q Consensus        76 ---------------------------------------------------~~~~~~~t~l~~a~~~~~~~~~~~l~~~~  104 (152)
                                                                         ..+..|.||||+|+..|+.+++++|++.|
T Consensus       143 l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g  222 (299)
T 1s70_B          143 LDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQAR  222 (299)
T ss_dssp             HHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCCCHHHHHHHHTCHHHHHHHHTTT
T ss_pred             HHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchhhhcCCCCCHHHHHHHCCcHHHHHHHHHcC
Confidence                                                               12346889999999999999999999999


Q ss_pred             CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       105 ~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       223 ~d~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  270 (299)
T 1s70_B          223 YDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (299)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             CCCCCcCCCCCcHHHHHHhcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999997

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=100.00  E-value=4.2e-32  Score=177.54  Aligned_cols=147  Identities=27%  Similarity=0.355  Sum_probs=102.8

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|+|+.|+..|+.+++++|++.+ ...++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        82 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g  157 (253)
T 1yyh_A           82 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLG  157 (253)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHST-TSCTTCCCTTCCCHHHHHHHHTCSSHHHHHHHTTCC---TTCBCTTS
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCccccCCCCCcHHHHHHHcChHHHHHHHHHcCCC---CCCcCCCC
Confidence            34455555666666666666666666666654 134555566666666666666666666666666555   55566777


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..++.+++++|++.|++++..+..|.|||++|+..++.+++++|+++|++++.++..|+||||
T Consensus       158 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  228 (253)
T 1yyh_A          158 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  228 (253)
T ss_dssp             CBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccCCCCHHH
Confidence            77888888778888888888777777777777788888888888888888888888888778888887764

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=100.00  E-value=7e-32  Score=164.25  Aligned_cols=136  Identities=35%  Similarity=0.495  Sum_probs=127.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      .++|+.|++.|+.+.+++|++.+.  .++ .+..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+.
T Consensus         3 ~~~L~~A~~~g~~~~v~~Ll~~g~--~~~-~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~   76 (153)
T 1awc_B            3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHH
T ss_pred             cHHHHHHHHcCCHHHHHHHHHcCC--CCC-cCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHHH
Confidence            579999999999999999999874  333 577899999999999999999999998877   67778899999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        77 ~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  138 (153)
T 1awc_B           77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cChHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999985

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=100.00  E-value=8.7e-32  Score=170.30  Aligned_cols=146  Identities=26%  Similarity=0.305  Sum_probs=134.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC-CCccccccCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE-SANVVNAVDEE   80 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~~   80 (152)
                      |++..+..|.|||+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|+..+. +   .+..+..
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~---~~~~~~~  105 (201)
T 3hra_A           31 QVDEVDTEGNTPLNIAVHNNDIEIAKALIDRG--ADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPD---LNKHNRY  105 (201)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCC---TTCCCTT
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhccCcc---cccccCC
Confidence            67778889999999999999999999999987  6788889999999999999999999999995543 4   6777889


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCC-----HHHHHHHHhcCCCCCCccccccccCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGW-----LKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~pl~~a~~~~~-----~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |.||||.|+..++.+++++|++.| .+++.++..|.||||+|+..+.     .+++++|+++|++++.++..|+||||
T Consensus       106 g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  183 (201)
T 3hra_A          106 GGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMD  183 (201)
T ss_dssp             SCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence            999999999999999999999998 8999999999999999999988     89999999999999999999999985

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=100.00  E-value=7.7e-33  Score=169.07  Aligned_cols=143  Identities=20%  Similarity=0.233  Sum_probs=117.4

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      +..+..+.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+ .++.+++++|++.+.+   ++.++..|.|
T Consensus         6 ~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~---~~~~d~~g~t   79 (156)
T 1bi7_B            6 GSSMEPSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLT   79 (156)
T ss_dssp             ----CCSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCC
T ss_pred             cCCCccchHHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCC---CCCcCCCCCc
Confidence            345667899999999999999999999987  678888999999999985 8999999999998877   6778889998


Q ss_pred             -hhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           84 -PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        84 -~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                       |||+|+..++.+++++|++.|++++.++..|.|||++|+..++.+++++|+++|++++.++..|.||.+
T Consensus        80 tpL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~~~  149 (156)
T 1bi7_B           80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAAAGGTRGSNHARIDAAE  149 (156)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSSCC---------------
T ss_pred             HHHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHhCHHHHHHHHHHcCCCCCccCcCcCcccc
Confidence             999999999999999999999999999999999999999999999999999999999999999999864

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=100.00  E-value=2e-31  Score=171.10  Aligned_cols=141  Identities=26%  Similarity=0.326  Sum_probs=68.2

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~   86 (152)
                      +..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+...  .+..+..|.||||
T Consensus        22 d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L~   97 (223)
T 2f8y_A           22 DRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPLI   97 (223)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBTTSC--TTCCCTTCCCHHH
T ss_pred             CCCCCchHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--cccCCCCCCcHHH
Confidence            344555555555555555555555544  344444555555555555555555555555443311  2333344444444


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      .|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.|||
T Consensus        98 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L  162 (223)
T 2f8y_A           98 LAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPL  162 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHH
T ss_pred             HHHHhCcHHHHHHHHHcCCCCcCcCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHH
Confidence            44444444444444444444444444444444444444444444444444444444444444444

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=100.00  E-value=2.3e-31  Score=172.21  Aligned_cols=147  Identities=33%  Similarity=0.478  Sum_probs=99.4

Q ss_pred             CCcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCC
Q 031838            1 MDMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus         1 ~~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      +|++.++..|.|+|+.|+..|+.+.+++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   .+..+..
T Consensus         2 ~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~   76 (237)
T 3b7b_A            2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAG--ANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGAL---VDPKDAE   76 (237)
T ss_dssp             CCCCCSSCCSCCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---CCCCCTT
T ss_pred             CCcccccCCCCCHHHHHHHcCcHHHHHHHHHcC--CCcCccCCCCCCHHHHHHHhCCHHHHHHHHhCCCC---CCCCCCC
Confidence            467777777888888888888888888887776  45666677777777777777777777777776655   4445556


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |.||||.|+..++.+++++|++.+ .+++..+..|.||+++|+..++.+++++|+++|++++.++..|.||||
T Consensus        77 g~t~L~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~  149 (237)
T 3b7b_A           77 GSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLH  149 (237)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCccCCCCCCHHH
Confidence            666666666666666666666665 555555556666666666666666666666666666666666666553

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=100.00  E-value=1.1e-31  Score=173.21  Aligned_cols=143  Identities=29%  Similarity=0.351  Sum_probs=128.0

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc--ccccCCCCChhhH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--VNAVDEEGWAPIH   86 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--~~~~~~~~~t~l~   86 (152)
                      .|.|+|+.|+..|+.+.+++|++.. +.+++.++..|.||||+|+..|+.+++++|++.+.+...  .+..+..|.||||
T Consensus         2 ~g~t~L~~A~~~g~~~~v~~Ll~~~-g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~   80 (232)
T 2rfa_A            2 IWESPLLLAAKENDVQALSKLLKFE-GCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALH   80 (232)
T ss_dssp             CTTCHHHHHHHTTCHHHHHHHHTTT-CSCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHhc-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHH
Confidence            5889999999999999999999973 367888999999999999999999999999998776321  1455678999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCC-------------CCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKND-------------GGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~-------------~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +|+..++.+++++|++.|++++..+.             .|.||||+|+..++.+++++|+++|++++.+|..|+||||
T Consensus        81 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~  159 (232)
T 2rfa_A           81 IAVINQNVNLVRALLARGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLH  159 (232)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHhCCCCCCcccCCcceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            99999999999999999999888755             6999999999999999999999999999999999999986

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=100.00  E-value=1.2e-31  Score=177.21  Aligned_cols=112  Identities=29%  Similarity=0.320  Sum_probs=89.9

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCC-CCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCc
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT  116 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~  116 (152)
                      ++.++..|.||||+|+..++.+++++|++.+.+   ++..+. .|.||||+|+..++.+++++|++.|++++.++..|.|
T Consensus       151 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t  227 (282)
T 1oy3_D          151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGAD---LNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRT  227 (282)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC---TTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCC
T ss_pred             CCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCcccccCCCC
Confidence            455677788899999988889999988888877   455553 4889999999999999999999999999999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          117 ALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       117 pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||++|+..++.+++++|+++|++++.++..|.|||+
T Consensus       228 pL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  263 (282)
T 1oy3_D          228 PLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCS  263 (282)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCCCCCCC--------
T ss_pred             HHHHHHHcCCcHHHHHHHHcCCCcCcCCCccccccc
Confidence            999999999999999999999999999999999985

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=99.98  E-value=2.2e-31  Score=172.34  Aligned_cols=146  Identities=27%  Similarity=0.305  Sum_probs=105.2

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ++..+..|.++|+.|+..|+.+++++|++.+ ...++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus        70 ~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~  145 (237)
T 3b7b_A           70 VDPKDAEGSTCLHLAAKKGHYEVVQYLLSNG-QMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSD---INIRDNEEN  145 (237)
T ss_dssp             CCCCCTTSCCHHHHHHHTTCHHHHHHHHTTT-CCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             CCCCCCCCCcHHHHHHHcCCHHHHHHHHhCC-CCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCC
Confidence            4445556666666666666666666666654 234555666677777777777777777777766665   455666777


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||||.|+..++.+++++|++.|++++..+..|.|||++|+..++.+++++|+++|++++.+|..|+||||
T Consensus       146 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  215 (237)
T 3b7b_A          146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQ  215 (237)
T ss_dssp             CHHHHHHHHCCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHH
T ss_pred             CHHHHHHHCCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHhHHHHHHHcCCCCCccCCCCCCHHH
Confidence            7888887777888888887777777777777888888888888888888888888888888888888764

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.98  E-value=5.6e-31  Score=170.62  Aligned_cols=147  Identities=28%  Similarity=0.360  Sum_probs=106.9

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcc--cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC-C
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL--KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-E   79 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~   79 (152)
                      ++..+..|.+||+.|+..|+.+++++|++.+..  ..++..+..|.||||+|+..++.+++++|++.+.+   .+..+ .
T Consensus        72 ~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~  148 (241)
T 1k1a_A           72 PMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGAD---IDAVDIK  148 (241)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHHHHHHcCCHHHHHHHHHcCCC---ccccccc
Confidence            344455556666666666666666666655421  14455566666777777777777777777766655   44445 5


Q ss_pred             CCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|.||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|+||||
T Consensus       149 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  221 (241)
T 1k1a_A          149 SGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM  221 (241)
T ss_dssp             TCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            6888888888888888888888888888888888888888888888888888888888888888888888886

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=99.98  E-value=2.2e-31  Score=171.74  Aligned_cols=145  Identities=32%  Similarity=0.388  Sum_probs=129.7

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ++..+..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus        33 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  107 (231)
T 3aji_A           33 ATRTDQDSRTALHWACSAGHTEIVEFLLQLG--VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAH---VNAVNQNGC  107 (231)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSC
T ss_pred             hhcCCCCCCCHHHHHHHcCcHHHHHHHHHhC--CCCCCcCCCCCCHHHHHHHcCHHHHHHHHHHcCCC---CCCCCCCCC
Confidence            3456778899999999999999999999886  57778888899999999999999999999988877   667778899


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||||.|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus       108 t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  177 (231)
T 3aji_A          108 TPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLH  177 (231)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCCccccCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999985

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=99.98  E-value=3e-31  Score=171.23  Aligned_cols=151  Identities=20%  Similarity=0.198  Sum_probs=132.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccc---cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc--
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKS---LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA--   76 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~---~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--   76 (152)
                      |++..+..|.|||+.|+..|+.+++++|++.+....   .+.++..|.||||+|+..++.+++++|++.+.+......  
T Consensus        29 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~  108 (232)
T 2rfa_A           29 EVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGS  108 (232)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSG
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHHcCCHHHHHHHHhCCCCCCcccCCc
Confidence            677888899999999999999999999999873221   256778899999999999999999999999887432211  


Q ss_pred             --------cCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH----HHHHhcCCCC----
Q 031838           77 --------VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV----ELLISRGAKI----  140 (152)
Q Consensus        77 --------~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~----~~Ll~~g~~~----  140 (152)
                              .+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++    ++|+++|++.    
T Consensus       109 ~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~L~~A~~~~~~~~~~~i~~~Ll~~g~~~~~~~  188 (232)
T 2rfa_A          109 VFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKS  188 (232)
T ss_dssp             GGSCCTTCSCCCCSSHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHTCSCHHHHHHHHHHHHHTTCSCSSCC
T ss_pred             ceeecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHcCChHHHHHHHHHHHhcCCchhhhh
Confidence                    123799999999999999999999999999999999999999999999999988    9999999988    


Q ss_pred             --CCccccccccCC
Q 031838          141 --NSKDKACNFLYQ  152 (152)
Q Consensus       141 --~~~~~~~~t~l~  152 (152)
                        +.++..|+||||
T Consensus       189 ~~~~~~~~g~tpl~  202 (232)
T 2rfa_A          189 LELVPNNQGLTPFK  202 (232)
T ss_dssp             GGGCCCTTSCCHHH
T ss_pred             hhccCCCCCCCHHH
Confidence              589999999985

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.98  E-value=5.9e-32  Score=161.67  Aligned_cols=132  Identities=23%  Similarity=0.275  Sum_probs=125.1

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCC-
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-   80 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~-   80 (152)
                      |++..+..+.++|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+. ++.+++++|++.+.+   ++.++.. 
T Consensus         4 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~~   77 (136)
T 1d9s_A            4 GIHMLGGSSDAGLATAAARGQVETVRQLLEAG--ADPNALNRFGRRPIQVMMM-GSAQVAELLLLHGAE---PNCADPAT   77 (136)
T ss_dssp             CCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCC---SSCCBTTT
T ss_pred             CccCCCCCCccHHHHHHHcCCHHHHHHHHHcC--CCcCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCC---CCCcCCCC
Confidence            67888999999999999999999999999987  6788889999999999999 999999999999888   6777888 


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      |.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        78 g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~~~~~~~~~Ll~~Gad  136 (136)
T 1d9s_A           78 LTRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAATGD  136 (136)
T ss_dssp             TBCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHHHHHHHTCHHHHHHHHHHHCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999985

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=99.98  E-value=1.3e-31  Score=165.95  Aligned_cols=143  Identities=22%  Similarity=0.272  Sum_probs=128.9

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ++..+..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus        29 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~  103 (172)
T 3v30_A           29 VNKPDERGFTPLIWASAFGEIETVRFLLEWG--ADPHILAKERESALSLASTGGYTDIVGLLLERDVD---INIYDWNGG  103 (172)
T ss_dssp             GGCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSC
T ss_pred             ccCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCchhhcccCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCC
Confidence            5667888999999999999999999999987  67888899999999999999999999999998887   677788999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccccc
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFL  150 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~  150 (152)
                      ||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|+++..++..|.||
T Consensus       104 t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~~~~~~~~~p  171 (172)
T 3v30_A          104 TPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPADP  171 (172)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHSCC-------
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHhCcHHHHHHHHHHHHHHhcccCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999887

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=99.98  E-value=1.4e-31  Score=177.03  Aligned_cols=148  Identities=25%  Similarity=0.329  Sum_probs=113.7

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCc----------
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN----------   72 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~----------   72 (152)
                      ++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|+..+....          
T Consensus        38 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~  115 (282)
T 1oy3_D           38 LDLQNDLGQTALHLAAILGEASTVEKLYAAG--AGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQ  115 (282)
T ss_dssp             GGCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSSCCCTTSCCHHHHHTTTTCHHHHHHHSSSCCSSCCCC-------
T ss_pred             ccccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCcchhHhhhccCCCCchhhHHHHhhc
Confidence            4555666777777777777777777777765  4566666677777777777777777777766543210          


Q ss_pred             ----------------------------------cccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCC-CCCcH
Q 031838           73 ----------------------------------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA  117 (152)
Q Consensus        73 ----------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~-~~~~p  117 (152)
                                                        .++..+..|.||||+|+..++.+++++|++.|++++..+. .|.||
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~tp  195 (282)
T 1oy3_D          116 SQDCTPDTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTP  195 (282)
T ss_dssp             ----------------------------CCCGGGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCH
T ss_pred             ccccCcchhcchhhhccccccchhhhhhhhhhhhcCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCcCH
Confidence                                              1344566788999999999999999999999999888875 48999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          118 LHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||+|+..++.+++++|+++|++++.++..|+||||
T Consensus       196 L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~  230 (282)
T 1oy3_D          196 LHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG  230 (282)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCCcccccCCCCHHH
Confidence            99999999999999999999999999999999985

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=99.98  E-value=7.3e-31  Score=168.44  Aligned_cols=147  Identities=27%  Similarity=0.355  Sum_probs=137.9

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.+||+.|+..|+.+++++|++.+ ...++..+..|.||||+|+..++.+++++|++.+.+   ++..+..|
T Consensus        50 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  125 (223)
T 2f8y_A           50 DANIQDNMGRTPLHAAVSADAQGVFQILIRNR-ATDLDARMHDGTTPLILAARLAVEGMLEDLINSHAD---VNAVDDLG  125 (223)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHBT-TSCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTS
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcC-CCCcccCCCCCCcHHHHHHHhCcHHHHHHHHHcCCC---CcCcCCCC
Confidence            56777889999999999999999999999986 247788889999999999999999999999998877   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++.++..|.||||
T Consensus       126 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  196 (223)
T 2f8y_A          126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRD  196 (223)
T ss_dssp             CBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCcCHHHHHHHcCCHHHHHHHHHcCCCCccccccCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999985

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.98  E-value=1e-31  Score=164.81  Aligned_cols=138  Identities=30%  Similarity=0.443  Sum_probs=125.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      ...++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+. ++.+++++|++.+.+   ++.++..|.||||.|
T Consensus         4 ~~~~~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A   77 (162)
T 1ihb_A            4 PWGNELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMKL-GNPEIARRLLLRGAN---PDLKDRTGFAVIHDA   77 (162)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             hHhhHHHHHHHcCCHHHHHHHHhCC--CCccccCccCccHHHHHHc-CcHHHHHHHHHcCCC---CCCCCCCCCCHHHHH
Confidence            4568999999999999999999876  6778888999999999998 999999999998877   667788999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC-CCCccccccccCC
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK-INSKDKACNFLYQ  152 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~-~~~~~~~~~t~l~  152 (152)
                      +..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++ ++.++..|.||||
T Consensus        78 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~  142 (162)
T 1ihb_A           78 ARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  142 (162)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHH
Confidence            999999999999999999999999999999999999999999999999998 5899999999985

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.98  E-value=1.2e-31  Score=181.33  Aligned_cols=146  Identities=18%  Similarity=0.144  Sum_probs=131.6

Q ss_pred             CcCc-CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCC---HHHHHHHHhcC-CCCccccc
Q 031838            2 DMDI-DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH---PEVVEILLSVD-ESANVVNA   76 (152)
Q Consensus         2 ~~~~-~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~---~~~~~~ll~~~-~~~~~~~~   76 (152)
                      |++. .+..|.||||.|+..|+.++|++|++.+  .+++.++..|.||||+|+..|+   .++++.++..+ .+   ++.
T Consensus       122 dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~G--ad~n~~d~~g~TpLh~A~~~g~~~~~~~~~~ll~~~~~~---~~~  196 (327)
T 1sw6_A          122 NLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPC---LIL  196 (327)
T ss_dssp             CSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHGGG---GGE
T ss_pred             CcccccCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHhcccccHHHHHHHHHhhhcc---ccC
Confidence            6777 7889999999999999999999999987  6888999999999999999998   67777777765 33   677


Q ss_pred             cCCCCChhhHHHHh----cCCHHHHHHHHHcCC---------------------------------------------CC
Q 031838           77 VDEEGWAPIHSAAS----IGNVTIVEMLLSKGA---------------------------------------------DV  107 (152)
Q Consensus        77 ~~~~~~t~l~~a~~----~~~~~~~~~l~~~~~---------------------------------------------~~  107 (152)
                      ++..|.||||+|+.    .++.+++++|++.+.                                             ++
T Consensus       197 ~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~~~~~~~~~~~~~i~~~~~~~g~~~~~~~~~g~t~L~~a~~~~~Ll~~~~  276 (327)
T 1sw6_A          197 EDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANML  276 (327)
T ss_dssp             ECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHHHHTT
T ss_pred             CCCCCCCHHHHHHHHccccccHHHHHHHHHHHHHHHhcccchHHHhhhhcccCCcccccccCCChhHHHHHHHHHHHhCC
Confidence            88999999999999    899999999987632                                             47


Q ss_pred             cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          108 NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       108 ~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +.+|..|.||||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       277 n~~d~~G~TpLh~A~~~g~~~~v~~Ll~~Gad~~~~d~~G~TpL~  321 (327)
T 1sw6_A          277 NAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  321 (327)
T ss_dssp             TCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             CCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            778889999999999999999999999999999999999999997

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=99.97  E-value=6.1e-31  Score=169.26  Aligned_cols=147  Identities=25%  Similarity=0.255  Sum_probs=128.5

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHHHHHhhccccccc-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      ..+..|.|+|+.|+..|+.+++++|++.+...++.. .+..|.||||+|+..++.+++++|++.+.... ++..+..|.|
T Consensus        31 ~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~-~~~~~~~g~t  109 (228)
T 2dzn_A           31 QKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPD-LNKITNQGVT  109 (228)
T ss_dssp             CCCTTSCCHHHHHHHTTCHHHHHHHHHTCTTCCGGGCCCTTSCCHHHHHHHHCCHHHHHHHHSSSSCCC-TTCCCTTCCC
T ss_pred             cCCCCCCCHHHHHHHcCCHHHHHHHHhccccccccccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCcc-cccCCcCCCC
Confidence            356778999999999999999999999874455555 77889999999999999999999998872222 6677888999


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCccccccccCC
Q 031838           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACNFLYQ  152 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~  152 (152)
                      |||.|+..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++| ++++.++..|+||||
T Consensus       110 ~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~  179 (228)
T 2dzn_A          110 CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLF  179 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHTTTCCCSCCCCTTSCCHHH
T ss_pred             HHHHHHHcCCHhHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHHHhcCcccccCcCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999999 999999999999985

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.97  E-value=8.6e-32  Score=178.17  Aligned_cols=146  Identities=22%  Similarity=0.285  Sum_probs=135.8

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHH-----HcCCHHHHHHHHhcCCCCcccccc
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAA-----SCGHPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      ++..+..|.||||.|+..|+.+++++|++.+. .+++..+..|.||||+|+     ..++.+++++++..+..   .+..
T Consensus       104 ~n~~d~~g~T~Lh~A~~~g~~~~v~~Ll~~g~-~~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g~~---~~~~  179 (276)
T 4hbd_A          104 VNIADSNGNTALHYSVSHANFPVVQQLLDSGV-CKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNI---NAKA  179 (276)
T ss_dssp             HTCCCTTSCCHHHHHHHTTCHHHHHHHHHTSC-CCTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHSCT---TCCC
T ss_pred             CcCCCCCCCCHHHHHHHCCCHHHHHHHHHCCC-CcCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcCCC---cccc
Confidence            67788999999999999999999999999872 378889999999999999     66789999999998866   5666


Q ss_pred             CCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCccccccccCC
Q 031838           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                      +..|.||||+|+..|+.+++++|++.|++++.+|..|.||||+|+..|+.+++++|++ .|++++.+|..|+||||
T Consensus       180 ~~~g~tpLh~A~~~g~~~~v~~Ll~~gad~n~~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~  255 (276)
T 4hbd_A          180 SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALM  255 (276)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHH
Confidence            7889999999999999999999999999999999999999999999999999999999 89999999999999985

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=99.97  E-value=3e-31  Score=173.44  Aligned_cols=143  Identities=25%  Similarity=0.316  Sum_probs=134.1

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|+..+...  .+..+..|.|||
T Consensus        53 ~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~t~L  128 (253)
T 1yyh_A           53 TDRTGETALHLAARYSRSDAAKRLLEAS--ADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATD--LDARMHDGTTPL  128 (253)
T ss_dssp             CCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHSTTSC--TTCCCTTCCCHH
T ss_pred             cCCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--ccccCCCCCcHH
Confidence            4678999999999999999999999987  678888999999999999999999999999887622  677788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+|+..++.+++++|++.|++++..+..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus       129 ~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpL~  195 (253)
T 1yyh_A          129 ILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLF  195 (253)
T ss_dssp             HHHHHHTCSSHHHHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHcChHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999986

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=99.97  E-value=9.9e-31  Score=169.47  Aligned_cols=149  Identities=23%  Similarity=0.333  Sum_probs=120.2

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCc-cccccCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESAN-VVNAVDEE   80 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~-~~~~~~~~   80 (152)
                      +++..+..|.|||+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++++..+.... ..+..+..
T Consensus        38 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~  115 (241)
T 1k1a_A           38 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAG--ASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYD  115 (241)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTT
T ss_pred             CCCcccccCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcC
Confidence            45666777888888888888888888888776  5666777778888888888888888888887765211 14566778


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |.||||.|+..++.+++++|++.|++++..+ ..|.||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus       116 g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~  188 (241)
T 1k1a_A          116 GLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH  188 (241)
T ss_dssp             SCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCcccccccCCCcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            8888888888888888888888888888877 67889999999999999999999999999999999999875

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.97  E-value=3.7e-31  Score=161.38  Aligned_cols=137  Identities=26%  Similarity=0.359  Sum_probs=128.5

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHH
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (152)
                      +.++|+.|+..|+.+.+++|++. ...+++..+..|.||||+ +..++.+++++|++.+.+   ++.++..|.||||.|+
T Consensus         2 ~~~~L~~A~~~g~~~~v~~ll~~-~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~   76 (156)
T 1bd8_A            2 AGDRLSGAAARGDVQEVRRLLHR-ELVHPDALNRFGKTALQV-MMFGSTAIALELLKQGAS---PNVQDTSGTSPVHDAA   76 (156)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHT-TCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             cchHHHHHHHhCCHHHHHHHHHh-hCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCCCC---CCCcCCCCCCHHHHHH
Confidence            46899999999999999999998 346788899999999999 999999999999999887   6777889999999999


Q ss_pred             hcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           90 SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        90 ~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..++.+++++|++.|++++.++..|.||||+|+..++.+++++|+++ ++++.++..|.||||
T Consensus        77 ~~~~~~~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~  138 (156)
T 1bd8_A           77 RTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLE  138 (156)
T ss_dssp             HTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHH
T ss_pred             HcCcHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999 999999999999985

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=4.8e-30  Score=170.45  Aligned_cols=143  Identities=23%  Similarity=0.235  Sum_probs=93.4

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ++..+..|.|||+.|+..|+.+++++|++.+  ..++.. ..|.||||+|+..++.+++++|++.+.+   ++.++..|.
T Consensus       118 ~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~  191 (285)
T 3d9h_A          118 VNGVTADWHTPLFNACVSGSWDCVNLLLQHG--ASVQPE-SDLASPIHEAARRGHVECVNSLIAYGGN---IDHKISHLG  191 (285)
T ss_dssp             SSCCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSSCS-CTTSCHHHHHHHHTCHHHHHHHHHTTCC---TTCCBTTTB
T ss_pred             CCCCCCCCCCHHHHHHHcCHHHHHHHHHHCC--CCCCCC-CCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCCC
Confidence            3344444455555555555555555555443  222221 2255555555555555555555555544   455667777


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||||+|+..++.+++++|++.|++++. +..|.|||++|+..++.+++++|+++|++++.+|..|+||||
T Consensus       192 t~L~~A~~~~~~~~v~~Ll~~ga~~~~-~~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~d~~g~t~l~  260 (285)
T 3d9h_A          192 TPLYLACENQQRACVKKLLESGADVNQ-GKGQDSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVE  260 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCTTC-CBTTBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             CHHHHHHHcCcHHHHHHHHHCCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            888888888888888888888777774 667788888888888888888888888888888888888875

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=3e-31  Score=173.59  Aligned_cols=144  Identities=18%  Similarity=0.173  Sum_probs=128.4

Q ss_pred             CCCCCChHHHHHHHh---CCHHHHHHHHHhhcccc---------cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 031838            6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLLKS---------LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~~~---------~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~   73 (152)
                      .+..|.||||.|+..   |+.+++++|++.+....         ...++..|.||||+|+..|+.+++++|++.+.+   
T Consensus        39 ~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---  115 (256)
T 2etb_A           39 EGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGAD---  115 (256)
T ss_dssp             BTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCGGGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             CCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhhcccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCC---
Confidence            688899999999999   99999999999873222         112346799999999999999999999999887   


Q ss_pred             ccccCCC-------------CChhhHHHHhcCCHHHHHHHHH---cCCCCcccCCCCCcHHHHHHH--cCCHH-------
Q 031838           74 VNAVDEE-------------GWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAAS--KGWLK-------  128 (152)
Q Consensus        74 ~~~~~~~-------------~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~pl~~a~~--~~~~~-------  128 (152)
                      ++..+..             |.||||+|+..++.+++++|++   .|++++.+|..|.||||+|+.  .++.+       
T Consensus       116 ~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~~~~~~~~~~~~~~~  195 (256)
T 2etb_A          116 VHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSALVIH  195 (256)
T ss_dssp             TTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHHH
T ss_pred             CCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHHcccCCchhhHHHHH
Confidence            4555554             9999999999999999999999   999999999999999999999  78888       


Q ss_pred             HHHHHHhcCCCC-------CCccccccccCC
Q 031838          129 IVELLISRGAKI-------NSKDKACNFLYQ  152 (152)
Q Consensus       129 ~~~~Ll~~g~~~-------~~~~~~~~t~l~  152 (152)
                      ++++|+++|+++       +.+|..|+||||
T Consensus       196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  226 (256)
T 2etb_A          196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLK  226 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHHcCCCcccccccccccCCCCCCHHH
Confidence            999999999999       899999999986

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=99.97  E-value=3e-30  Score=171.48  Aligned_cols=143  Identities=27%  Similarity=0.314  Sum_probs=88.2

Q ss_pred             CcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838            4 DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      +.++..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++.++..|.|
T Consensus        53 ~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~t  127 (285)
T 3d9h_A           53 MGDAVSDWSPMHEAAIHGHQLSLRNLISQG--WAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQ---VNGVTADWHT  127 (285)
T ss_dssp             CSSSCCSCCHHHHHHHTTCHHHHHHHHHTT--CCSCEECTTCCCHHHHHHHTTCHHHHHHHHHTTCC---SSCCCTTCCC
T ss_pred             cCCCccCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHCCcHHHHHHHHHCCCC---CCCCCCCCCC
Confidence            344555666677777777766666666655  45556666666666666666666666666666555   4455556666


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |||+|+..++.+++++|++.|++++..+ .|.|||++|+..++.+++++|+++|++++.++..|.||||
T Consensus       128 ~L~~A~~~~~~~~v~~Ll~~g~~~~~~~-~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~d~~g~t~L~  195 (285)
T 3d9h_A          128 PLFNACVSGSWDCVNLLLQHGASVQPES-DLASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLY  195 (285)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCSC-TTSCHHHHHHHHTCHHHHHHHHHTTCCTTCCBTTTBCHHH
T ss_pred             HHHHHHHcCHHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            6666666666666666666665555432 3556666666666666666666666666666666666553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=2e-30  Score=180.98  Aligned_cols=146  Identities=31%  Similarity=0.412  Sum_probs=128.3

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.+||+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus       237 ~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  311 (437)
T 1n11_A          237 SANAESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMG  311 (437)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSC
T ss_pred             CCCCCCCCCCCHHHHHHHCCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCcc---CCCCCCCC
Confidence            45666777888888888888888888888876  56677788888999999999999999999888777   66778889


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..|+.+++++|++.|++++.++..|.||||+|+..++.+++++|+++|++++.++..|+|||+
T Consensus       312 ~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~L~~A~~~g~~~iv~~Ll~~ga~~~~~~~~g~t~l~  382 (437)
T 1n11_A          312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA  382 (437)
T ss_dssp             CCHHHHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             CCHHHHHHHcCcHHHHHHHHhcCCCCCCCCCCCCCHHHHHHHCChHHHHHHHHHCcCCCCCCCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999974

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=6.3e-30  Score=173.47  Aligned_cols=149  Identities=28%  Similarity=0.263  Sum_probs=94.2

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc--------
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--------   73 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+...        
T Consensus        83 ~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~  160 (351)
T 3utm_A           83 DVHAKDKGGLVPLHNACSYGHYEVTELLLKHG--ACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSA  160 (351)
T ss_dssp             CTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             CCCccCCCCCcHHHHHHHCCCHHHHHHHHHCC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcc
Confidence            44555556666666666666666666666654  45555666666666666666666666666665443211        


Q ss_pred             -------------------------------------------------------------------------------c
Q 031838           74 -------------------------------------------------------------------------------V   74 (152)
Q Consensus        74 -------------------------------------------------------------------------------~   74 (152)
                                                                                                     +
T Consensus       161 l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~  240 (351)
T 3utm_A          161 VDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANV  240 (351)
T ss_dssp             HHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTTCCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCT
T ss_pred             hHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhcccccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCc
Confidence                                                                                           2


Q ss_pred             cccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           75 NAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        75 ~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +.++..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++.++..|.||+|
T Consensus       241 ~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~gad~~~~~~~g~tal~  318 (351)
T 3utm_A          241 NEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAAQ  318 (351)
T ss_dssp             TCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCCCcCCCCCChhh
Confidence            334455666666666666666666666666666666666666666666666666666666666666666666666653

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.97  E-value=3.8e-31  Score=170.79  Aligned_cols=143  Identities=23%  Similarity=0.318  Sum_probs=131.2

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChh
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~   84 (152)
                      ..+..+.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.||
T Consensus        16 ~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~---~n~~d~~g~tp   90 (229)
T 2vge_A           16 RARLNPLVLLLDAALTGELEVVQQAVKEM--NDPSQPNEEGITALHNAICGANYSIVDFLITAGAN---VNSPDSHGWTP   90 (229)
T ss_dssp             CTTSCHHHHHHHHHHHTCHHHHHHHHHHS--SCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCH
T ss_pred             ccccchhHHHHHHHHcCCHHHHHHHHhcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCCH
Confidence            34456778999999999999999999987  57888999999999999999999999999999887   67788899999


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHH--HHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           85 IHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA--ASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~pl~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||+|+..|+.+++++|++.|++++..+ ..|.|||++|  +..++.+++++|+++|++++..+..|.||++
T Consensus        91 Lh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~a~~~~~~~~v~~Ll~~ga~~~~~~~~~~~~l~  161 (229)
T 2vge_A           91 LHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW  161 (229)
T ss_dssp             HHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGGGCCTTSTTHHHHHHHHHHHHHHTTTSGGGEEEESS
T ss_pred             HHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHhcChHHHHHHHHHcCCCcccccCCchHHHH
Confidence            999999999999999999999999986 6999999999  9999999999999999999888888888764

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=2.5e-30  Score=176.83  Aligned_cols=108  Identities=20%  Similarity=0.364  Sum_probs=59.2

Q ss_pred             CCCCCchHHHHHHHcC--CHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCC-----CcccCCC
Q 031838           41 RNDDDRTLLHVAASCG--HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD-----VNLKNDG  113 (152)
Q Consensus        41 ~~~~g~t~l~~a~~~~--~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~-----~~~~~~~  113 (152)
                      ++..|.||||+|+..|  +.+++++|++.+.+   ++..+..|.||||+|+..|+.+++++|++.|++     ++..+..
T Consensus       134 ~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~  210 (364)
T 3ljn_A          134 KHCKGQTALHWCVGLGPEYLEMIKILVQLGAS---PTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ  210 (364)
T ss_dssp             EEESCCCHHHHHHHSCGGGHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTT
T ss_pred             CCCCCCCHHHHHHHcCCchHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCC
Confidence            3344555555555555  55555555555444   344445555555555555555555555555554     5555555


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838          114 GRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus       114 ~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      |.||||+|+..|+.+++++|+++|++++..+..|.|||
T Consensus       211 g~t~L~~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL  248 (364)
T 3ljn_A          211 GNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPL  248 (364)
T ss_dssp             CCCTTHHHHTTTCHHHHHHHHTTTCCTTCCCTTSCCHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHH
Confidence            55555555555555555555555555555555555555

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=99.97  E-value=1.1e-29  Score=172.20  Aligned_cols=146  Identities=32%  Similarity=0.378  Sum_probs=124.4

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++..+..|
T Consensus        50 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~iv~~Ll~~g~~---~~~~~~~g  124 (351)
T 3utm_A           50 NCHASDGRKSTPLHLAAGYNRVRIVQLLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVTELLLKHGAC---VNAMDLWQ  124 (351)
T ss_dssp             TCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CcccCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCcHHHHHHHCCCHHHHHHHHHCCCC---CCCCCCCC
Confidence            56777888999999999999999999999987  67888899999999999999999999999999887   66677889


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCC------------------------------------------------------
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADV------------------------------------------------------  107 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~------------------------------------------------------  107 (152)
                      .||||+|+..++.+++++|++.|+++                                                      
T Consensus       125 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  204 (351)
T 3utm_A          125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIIN  204 (351)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCSSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHTTTCCTT
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCccccCCCCcchHHHhhhhhHHHHHhhhcccHHHHHHHhccHHHHHHHHHhhccc
Confidence            99999999988888888777765543                                                      


Q ss_pred             ------------------------------------cccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838          108 ------------------------------------NLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus       108 ------------------------------------~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                                                          +.++..|.||||+|+..++.+++++|+++|++++.++..|+|||
T Consensus       205 ~~~~~~~~t~L~~A~~~~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~n~~d~~g~t~L  284 (351)
T 3utm_A          205 FKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL  284 (351)
T ss_dssp             CCCTTTCCCHHHHHHHCCSTTHHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHH
T ss_pred             ccCCCCCCCHHHHHHHHhCccHHHHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHH
Confidence                                                34556677888888888888888888888888888888888887


Q ss_pred             C
Q 031838          152 Q  152 (152)
Q Consensus       152 ~  152 (152)
                      |
T Consensus       285 ~  285 (351)
T 3utm_A          285 H  285 (351)
T ss_dssp             H
T ss_pred             H
Confidence            5

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=99.97  E-value=6.9e-30  Score=161.55  Aligned_cols=141  Identities=23%  Similarity=0.275  Sum_probs=131.4

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      ..+.++|+.|+..|+.+.+++++..+ ..+++..+..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||+
T Consensus         3 ~~~~~~L~~A~~~g~~~~v~~ll~~~-~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~l~~   78 (201)
T 3hra_A            3 TYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGAD---INLQNSISDSPYLY   78 (201)
T ss_dssp             CCCTTHHHHHHHTTCHHHHHHHHTCT-TCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHH
T ss_pred             cccccHHHHHHHhccHHHHHHHHHcC-CCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHH
Confidence            46789999999999999999999986 357888999999999999999999999999999887   67778899999999


Q ss_pred             HHhcCCHHHHHHHH-HcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCccccccccCC
Q 031838           88 AASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACNFLYQ  152 (152)
Q Consensus        88 a~~~~~~~~~~~l~-~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t~l~  152 (152)
                      |+..++.+++++|+ ..+.+++..+..|.|||++|+..++.+++++|+++| ++++.++..|.||||
T Consensus        79 A~~~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~  145 (201)
T 3hra_A           79 AGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALI  145 (201)
T ss_dssp             HHHTTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHH
T ss_pred             HHHcCCHHHHHHHHhccCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHH
Confidence            99999999999999 557899999999999999999999999999999999 999999999999986

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.97  E-value=2.9e-29  Score=147.67  Aligned_cols=126  Identities=41%  Similarity=0.606  Sum_probs=118.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      .|.|+|+.|+..|+.+++++|++.+  ..++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||.|
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~l~~A   75 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLA   75 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCcHHHHH
Confidence            3789999999999999999999987  57788899999999999999999999999998877   677788999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      +..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++
T Consensus        76 ~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~Gad  126 (126)
T 1n0r_A           76 ARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAY  126 (126)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCC
T ss_pred             HHcChHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCcHHHHHHHHHcCCC
Confidence            999999999999999999999999999999999999999999999999986

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=99.97  E-value=2.1e-30  Score=169.58  Aligned_cols=142  Identities=23%  Similarity=0.311  Sum_probs=124.3

Q ss_pred             CCChHHHHHHHhCCHHHH----HHHHHhhccccccc----CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCcccc--
Q 031838            9 IKDKDLFKAAETGDSSTF----KSLSKQQLLKSLSL----RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVN--   75 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~----~~ll~~~~~~~~~~----~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~--   75 (152)
                      +|.++|+.|+..|+.+.|    +++++.+  .+++.    ++..|.||||+|+..   |+.+++++|++.+.+.....  
T Consensus         1 ~G~t~L~~A~~~g~~~~v~~ll~~l~~~g--~~i~~~~~~~d~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~   78 (256)
T 2etb_A            1 FDRDRLFSVVSRGVPEELTGLLEYLRWNS--KYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPL   78 (256)
T ss_dssp             CCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSBTTTTBCHHHHHHHTCBTTBCTTHHHHHHHHHHTTCSSCG
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHcC--CCcccccccCCCCCCCHHHHHHHccccchHHHHHHHHhcCCcccchhhh
Confidence            478999999999999855    4555555  56776    789999999999999   99999999999876533211  


Q ss_pred             ------ccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCC-------------CCcHHHHHHHcCCHHHHHHHHh-
Q 031838           76 ------AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-------------GRTALHYAASKGWLKIVELLIS-  135 (152)
Q Consensus        76 ------~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-------------~~~pl~~a~~~~~~~~~~~Ll~-  135 (152)
                            ..+..|.||||+|+..|+.+++++|++.|++++..+..             |.||||+|+..++.+++++|++ 
T Consensus        79 ~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~~~v~~Ll~~  158 (256)
T 2etb_A           79 VNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLEN  158 (256)
T ss_dssp             GGCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCCSGGGSCCSSSCCCSCSSHHHHHHHTTCHHHHHHHHHC
T ss_pred             cccccccccccCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhc
Confidence                  23467999999999999999999999999999998876             9999999999999999999999 


Q ss_pred             --cCCCCCCccccccccCC
Q 031838          136 --RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       136 --~g~~~~~~~~~~~t~l~  152 (152)
                        +|++++.++..|+||||
T Consensus       159 ~~~ga~~n~~d~~g~TpLh  177 (256)
T 2etb_A          159 PHQPASLEATDSLGNTVLH  177 (256)
T ss_dssp             SSCCCCTTCCCTTSCCHHH
T ss_pred             cccCCCcCccCCCCCCHHH
Confidence              99999999999999986

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=99.97  E-value=3.7e-30  Score=176.02  Aligned_cols=146  Identities=19%  Similarity=0.256  Sum_probs=104.0

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc-----------
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-----------   73 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----------   73 (152)
                      ..+..|.|+||.|+..|+.+.|++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+...           
T Consensus        15 ~~d~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~g~t~L~~A~   92 (364)
T 3ljn_A           15 KSDDENMEKIHVAARKGQTDEVRRLIETG--VSPTIQNRFGCTALHLACKFGCVDTAKYLASVGEVHSLWHGQKPIHLAV   92 (364)
T ss_dssp             -CCHHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHCCHHHHHHHHHHCCCCCCBTTBCHHHHHH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCccccCCCCCcHHHHHHHcCCHHHHHHHHHCCCCccccCCCCHHHHHH
Confidence            33444555555555555555555555544  34445555555555555555555555555554432111           


Q ss_pred             ---------------------ccc-----------------cCCCCChhhHHHHhcC--CHHHHHHHHHcCCCCcccCCC
Q 031838           74 ---------------------VNA-----------------VDEEGWAPIHSAASIG--NVTIVEMLLSKGADVNLKNDG  113 (152)
Q Consensus        74 ---------------------~~~-----------------~~~~~~t~l~~a~~~~--~~~~~~~l~~~~~~~~~~~~~  113 (152)
                                           .+.                 .+..|.||||+|+..|  +.+++++|++.|++++..+..
T Consensus        93 ~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~g~~~~~~v~~Ll~~ga~~~~~d~~  172 (364)
T 3ljn_A           93 MANKTDLVVALVEGAKERGQMPESLLNECDEREVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKA  172 (364)
T ss_dssp             HTTCHHHHHHHHHHHHHHTCCHHHHHTCCCCCCEEEETTEEEEESCCCHHHHHHHSCGGGHHHHHHHHHHTCCTTCCCTT
T ss_pred             HcCCHHHHHHHHHhccccCCCHHHHHhhcchHhhhhhccccCCCCCCCHHHHHHHcCCchHHHHHHHHHcCCCCcccCCC
Confidence                                 111                 5667899999999999  999999999999999999999


Q ss_pred             CCcHHHHHHHcCCHHHHHHHHhcCCC-----CCCccccccccCC
Q 031838          114 GRTALHYAASKGWLKIVELLISRGAK-----INSKDKACNFLYQ  152 (152)
Q Consensus       114 ~~~pl~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~  152 (152)
                      |.|||++|+..++.+++++|+++|++     ++..+..|.||||
T Consensus       173 g~t~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~  216 (364)
T 3ljn_A          173 DETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQGNSHLH  216 (364)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTH
T ss_pred             CCCHHHHHHHcCCHHHHHHHHhcccccccccccccCCCCCcHHH
Confidence            99999999999999999999999988     9999999999986

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=99.97  E-value=1.3e-29  Score=155.30  Aligned_cols=132  Identities=27%  Similarity=0.376  Sum_probs=122.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.++|+.|+. |+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        30 ~~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  103 (162)
T 1ihb_A           30 NVNAQNGFGRTALQVMKL-GNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEG  103 (162)
T ss_dssp             CTTCCCTTSCCHHHHCCS-SCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CccccCccCccHHHHHHc-CcHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCC
Confidence            567788899999999999 9999999999987  67888899999999999999999999999998877   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCC-CcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~-~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      .||||+|+..++.+++++|++.|.+ ++..+..|.||+++|+..++.+++++|+++|++
T Consensus       104 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~GAd  162 (162)
T 1ihb_A          104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANGAG  162 (162)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHccCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHhCCC
Confidence            9999999999999999999999987 588999999999999999999999999999985

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.97  E-value=1.4e-30  Score=170.72  Aligned_cols=142  Identities=24%  Similarity=0.192  Sum_probs=126.9

Q ss_pred             CCCChHHHHHH---HhCCHHHHHHHHHhhcc---------cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 031838            8 TIKDKDLFKAA---ETGDSSTFKSLSKQQLL---------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (152)
Q Consensus         8 ~~~~~~l~~a~---~~~~~~~~~~ll~~~~~---------~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~   75 (152)
                      ..|.|+||.|+   ..|+.+++++|++.+..         ..+...+..|.||||+|+..|+.+++++|++.+.+   ++
T Consensus        44 ~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~  120 (260)
T 3jxi_A           44 STGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGAD---VH  120 (260)
T ss_dssp             TTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHHHHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCC---TT
T ss_pred             CCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchHhhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCC---cC
Confidence            66999999999   78999999999997632         23445566899999999999999999999999887   45


Q ss_pred             ccC--------------CCCChhhHHHHhcCCHHHHHHHHH---cCCCCcccCCCCCcHHHHHHHcCC---------HHH
Q 031838           76 AVD--------------EEGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------LKI  129 (152)
Q Consensus        76 ~~~--------------~~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~pl~~a~~~~~---------~~~  129 (152)
                      ..+              ..|.||||+|+..|+.+++++|++   .|++++.+|..|.||||+|+..++         .++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~~~~~~~~~~~~~~~~~  200 (260)
T 3jxi_A          121 AQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKM  200 (260)
T ss_dssp             CCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSSHHHHHHHHHH
T ss_pred             ccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHHHhccCchhHHHHHHHH
Confidence            555              579999999999999999999999   999999999999999999998877         799


Q ss_pred             HHHHHhcCCCC-------CCccccccccCC
Q 031838          130 VELLISRGAKI-------NSKDKACNFLYQ  152 (152)
Q Consensus       130 ~~~Ll~~g~~~-------~~~~~~~~t~l~  152 (152)
                      +++|+++|+++       +.++..|+||||
T Consensus       201 v~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~  230 (260)
T 3jxi_A          201 YDLLLIKCAKLFPDTNLEALLNNDGLSPLM  230 (260)
T ss_dssp             HHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHhCcccccccchhhcccCCCCCHHH
Confidence            99999999998       679999999986

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=99.97  E-value=4.8e-29  Score=154.00  Aligned_cols=131  Identities=34%  Similarity=0.446  Sum_probs=122.8

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.++|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        39 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g  113 (169)
T 2y1l_E           39 DVNAEDASGWTPLHLAAFNGHLEIVEVLLKNG--ADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGAD---VNANDMEG  113 (169)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCC
Confidence            66778889999999999999999999999987  67888899999999999999999999999999887   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|++.|
T Consensus       114 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~G  169 (169)
T 2y1l_E          114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKLN  169 (169)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTC-
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHhCCHHHHHHHHHcC
Confidence            99999999999999999999999999999999999999999999999999999876

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=99.97  E-value=1.2e-29  Score=164.23  Aligned_cols=148  Identities=24%  Similarity=0.264  Sum_probs=134.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcc----cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccccc
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL----KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      |++..+..|.+||+.|+..|+.+++++|++.+..    ..++..+..|.||||+|+..++.+++++|++.+.+   ++.+
T Consensus        70 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~  146 (236)
T 1ikn_D           70 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGAD---VNAQ  146 (236)
T ss_dssp             CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCC---TTCC
T ss_pred             CCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCC
Confidence            5677888999999999999999999999998632    22567788899999999999999999999999888   6666


Q ss_pred             CC-CCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC--CccccccccCC
Q 031838           78 DE-EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN--SKDKACNFLYQ  152 (152)
Q Consensus        78 ~~-~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~--~~~~~~~t~l~  152 (152)
                      +. .|.||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++..  ..+..|.||++
T Consensus       147 ~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~ga~~~~~~~~~~~~~~~~  224 (236)
T 1ikn_D          147 EPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYD  224 (236)
T ss_dssp             CTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCGGGSSCCCCCTTTCCC
T ss_pred             CCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcccCCCCCHHHHHHccCchHHHHHHHHcchhhhhcCCccchHHHHh
Confidence            76 89999999999999999999999999999999999999999999999999999999999776  78888998874

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=99.97  E-value=1.2e-29  Score=158.01  Aligned_cols=141  Identities=28%  Similarity=0.315  Sum_probs=131.6

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        31 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g  105 (179)
T 3f6q_A           31 DLNQGDDHGFSPLHWACREGRSAVVEMLIMRG--ARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKAD---INAVNEHG  105 (179)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             cccccCCCCCCHHHHHHHcCcHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCC
Confidence            56778889999999999999999999999987  67888899999999999999999999999999887   67788999


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccc
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKAC  147 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~  147 (152)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|++++..+..+
T Consensus       106 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~~~~L~~~g~~~~~~~~~~  171 (179)
T 3f6q_A          106 NVPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKD  171 (179)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCSSBCCTTSCCGGGGSCHHHHHHHHHHHHHTTCCCSCBCCCC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCcchhccCCCCcHHHHHHHHHHHHHHHHHHhhcCcccCCccc
Confidence            999999999999999999999999999999999999999999999999999999999998766544

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.97  E-value=4.9e-30  Score=170.46  Aligned_cols=143  Identities=17%  Similarity=0.141  Sum_probs=103.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++..  +|.||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus        23 ~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~--~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g   95 (285)
T 3kea_A           23 DTFKADVHGHSASYYAIADNNVRLVCTLLNAG--ALKNLL--ENEFPLHQAATLEDTKIVKILLFSGLD---DSQFDDKG   95 (285)
T ss_dssp             TTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--GGGSCC--TTCCHHHHHTTSSSCHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CCCccCCCCCCHHHHHHHcCCHHHHHHHHhCC--CCCCCC--CCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCcCCCC
Confidence            45677778888888888888888888888876  344444  377888888888888888888877766   55667777


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCC-CcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGG-RTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~-~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..|+.+++++|++.|++++..+..| .|||++|+..++.+++++|+++|++.... ..|.||||
T Consensus        96 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~  166 (285)
T 3kea_A           96 NTALYYAVDSGNMQTVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDL-AILLSCIH  166 (285)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHHHHHHTTSCTTCCC-STHHHHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHHHHHHhCCCccccc-cCCccHHH
Confidence            888888888888888888887777777777766 57777776666666666666666555222 15555553

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=99.97  E-value=1.2e-29  Score=177.16  Aligned_cols=146  Identities=30%  Similarity=0.347  Sum_probs=87.8

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      +++..+..|.|||+.|+..|++++|++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++.++..|
T Consensus         6 ~~~~~~~~g~t~L~~Aa~~g~~~~v~~Ll~~g--~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g   80 (437)
T 1n11_A            6 SGGGGGESGLTPLHVASFMGHLPIVKNLLQRG--ASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAK---VNAKAKDD   80 (437)
T ss_dssp             ---------CCHHHHHHHHTCHHHHHHHHHTT--CCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCC---SSCCCTTS
T ss_pred             CccccCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCCCCCCC
Confidence            34555666667777777777777777776665  45555666666666666666666666666666655   45555666


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..|+.+++++|++.|++++..+..|.|||++|+..|+.+++++|++++++.+..+..|.||||
T Consensus        81 ~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~g~t~L~  151 (437)
T 1n11_A           81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLH  151 (437)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHH
T ss_pred             CCHHHHHHHCCCHHHHHHHHhCCCCCCCCCCCCCcHHHHHHHcCCHHHHHHHHhCCCCCcCCCCCCCCHHH
Confidence            66666666666666666666666666666666666666666666666666666666555555555555553

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.97  E-value=5.2e-29  Score=148.84  Aligned_cols=126  Identities=34%  Similarity=0.496  Sum_probs=117.0

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~   86 (152)
                      ...+.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~t~L~   85 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANG--ADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGAD---VNAVDAIGFTPLH   85 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHH
Confidence            345679999999999999999999987  67888899999999999999999999999998877   6777889999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      +|+..++.+++++|++.|++++..|..|.||+++|+..++.+++++|+++|
T Consensus        86 ~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~~A~~~~~~~~~~~Ll~~G  136 (136)
T 2jab_A           86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKLN  136 (136)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHC-
T ss_pred             HHHHcCCHHHHHHHHHcCCCCcCcCCCCCCHHHHHHHCCCHHHHHHHHHcC
Confidence            999999999999999999999999999999999999999999999999986

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.97  E-value=5.7e-30  Score=169.00  Aligned_cols=144  Identities=23%  Similarity=0.247  Sum_probs=127.3

Q ss_pred             CCCCCChHHHHHHHh---CCHHHHHHHHHhhcc---------cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc
Q 031838            6 DQTIKDKDLFKAAET---GDSSTFKSLSKQQLL---------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV   73 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~---~~~~~~~~ll~~~~~---------~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~   73 (152)
                      .+..|.|+||.|+..   |+.+++++|++.+..         ......+..|.||||+|+..++.+++++|++.+.+   
T Consensus        50 ~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ga~~~~~~~~i~~~~~~~d~~g~tpL~~A~~~g~~~~v~~Ll~~ga~---  126 (273)
T 2pnn_A           50 DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGAD---  126 (273)
T ss_dssp             CTTTCCCHHHHHHHSCBTTBCHHHHHHHHHHHHTTCHHHHHTCCCCSTTTTTCCHHHHHHHTTCHHHHHHHHHTTCC---
T ss_pred             cCcCCCCHHHHHHHHHhcCChHHHHHHHHhhccccchhHHhhcccccccCCCCCHHHHHHHcCCHHHHHHHHHCCCC---
Confidence            467899999999986   999999999998632         11223567899999999999999999999999887   


Q ss_pred             ccccCC--------------CCChhhHHHHhcCCHHHHHHHHH---cCCCCcccCCCCCcHHHHHHHcCC---------H
Q 031838           74 VNAVDE--------------EGWAPIHSAASIGNVTIVEMLLS---KGADVNLKNDGGRTALHYAASKGW---------L  127 (152)
Q Consensus        74 ~~~~~~--------------~~~t~l~~a~~~~~~~~~~~l~~---~~~~~~~~~~~~~~pl~~a~~~~~---------~  127 (152)
                      ++..+.              .|.||||+|+..++.+++++|++   .|++++.+|..|.||||+|+..++         .
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~  206 (273)
T 2pnn_A          127 VQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVT  206 (273)
T ss_dssp             TTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHHHCCSCHHHHHHHH
T ss_pred             cCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHHccCcchhHHHHHH
Confidence            455554              79999999999999999999999   999999999999999999999888         7


Q ss_pred             HHHHHHHhcCCCCC-------CccccccccCC
Q 031838          128 KIVELLISRGAKIN-------SKDKACNFLYQ  152 (152)
Q Consensus       128 ~~~~~Ll~~g~~~~-------~~~~~~~t~l~  152 (152)
                      +++++|+++|++++       .++..|+||||
T Consensus       207 ~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~  238 (273)
T 2pnn_A          207 SMYNEILILGAKLHPTLKLEEITNRKGLTPLA  238 (273)
T ss_dssp             HHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHH
T ss_pred             HHHHHHHHhhhhcccccccccccCCCCCCHHH
Confidence            99999999999996       48999999986

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=99.97  E-value=2.7e-30  Score=170.39  Aligned_cols=144  Identities=25%  Similarity=0.372  Sum_probs=110.7

Q ss_pred             CcCCCCCChHHHHHHHhCCHH-HHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            4 DIDQTIKDKDLFKAAETGDSS-TFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         4 ~~~~~~~~~~l~~a~~~~~~~-~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      +..+..+.++|+.|+..+..+ .++.|++.+  .+++.++..|.||||+|+..|+.+++++|+..+.+   .+..+..|.
T Consensus        46 ~~~~~~~~t~L~~a~~~~~~~~~v~~Ll~~G--advn~~d~~G~TpLh~A~~~g~~~~v~~Ll~~~a~---~~~~~~~g~  120 (269)
T 4b93_B           46 SAADPEFCHPLCQCPKCAPAQKRLAKVPASG--LGVNVTSQDGSSPLHVAALHGRADLIPLLLKHGAN---AGARNADQA  120 (269)
T ss_dssp             -----------------------------CC--CCTTCCCTTSCCHHHHHHHTTCTTHHHHHHHTTCC---TTCCCTTCC
T ss_pred             cccCccCCCHHHHHHHhCCHHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhcCCC---cCccCCCCC
Confidence            345567889999999988765 677888877  67889999999999999999999999999999887   667788999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           83 APIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||++.|+..++.+++++|++.|++++.+|..|.||||+|+..|+.+++++|+++|++++..+..|.||||
T Consensus       121 t~l~~a~~~~~~~~~~~Ll~~g~~~n~~d~~g~TpL~~A~~~g~~~~v~~Ll~~gadvn~~~~~g~t~Lh  190 (269)
T 4b93_B          121 VPLHLACQQGHFQVVKCLLDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALH  190 (269)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCGGGHHHHHHTTCCTTCBCTTSCBHHH
T ss_pred             CccccccccChHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHCCCCCCccccCCCcHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999999986

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=99.97  E-value=2e-29  Score=168.12  Aligned_cols=139  Identities=33%  Similarity=0.476  Sum_probs=127.4

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      .+.++|+.|+..|+++.|++|++.+  .+++..+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|
T Consensus        39 ~~~t~l~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~tpL~~A  113 (299)
T 1s70_B           39 DDGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGAN---INQPDNEGWIPLHAA  113 (299)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCCCcHHHHH
Confidence            4578999999999999999999987  67888899999999999999999999999999887   677788999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccC---------------------------------------------------------
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKN---------------------------------------------------------  111 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~---------------------------------------------------------  111 (152)
                      +..|+.+++++|++.|++++..+                                                         
T Consensus       114 ~~~g~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  193 (299)
T 1s70_B          114 ASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDV  193 (299)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred             HHcCCHHHHHHHHhCCCCCCCcCCCCCCHHHHHHhcchHHHHHHHHhhcCCCchhhhhhhhhHHHHHHHHHHhccCcchh
Confidence            99999999999999998876544                                                         


Q ss_pred             ---CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          112 ---DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       112 ---~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                         ..|.||||+|+..|+.+++++|+++|++++.++..|.||||
T Consensus       194 ~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~d~~~~d~~g~tpL~  237 (299)
T 1s70_B          194 RHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLH  237 (299)
T ss_dssp             CCTTTCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHH
T ss_pred             hhcCCCCCHHHHHHHCCcHHHHHHHHHcCCCCCCcCCCCCcHHH
Confidence               34678899999999999999999999999999999999986

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.97  E-value=4e-30  Score=166.92  Aligned_cols=140  Identities=21%  Similarity=0.228  Sum_probs=91.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~   86 (152)
                      +..|.|+|+.|++.++.+.++.|++.+  .+++. +..|.||||.|+..|+.+++++|+..+.+   ++.++..|.||||
T Consensus         2 ~~~g~t~L~~a~~~~~~~~~~~ll~~g--~~~~~-~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~t~L~   75 (239)
T 1ycs_B            2 EITGQVSLPPGKRTNLRKTGSERIAHG--MRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALH   75 (239)
T ss_dssp             --------------------------------------CHHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHH
T ss_pred             CccccccCchhhhhhhHHHHHHHhccC--CCccc-CchhhHHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHH
Confidence            356888999999999999998888887  34444 35678899999999999999988887776   6677888889999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccc-ccCC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN-FLYQ  152 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~-t~l~  152 (152)
                      +|+..|+.+++++|++.|++++.+|..|.||||+|+..++.+++++|+++|++++..+..|. ||||
T Consensus        76 ~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~  142 (239)
T 1ycs_B           76 NAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAAD  142 (239)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcceecCCCCcchHH
Confidence            99999999999999988888888888889999999999999999999999999988887777 8875

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.97  E-value=5.1e-29  Score=161.08  Aligned_cols=147  Identities=24%  Similarity=0.292  Sum_probs=126.8

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++.-+..+.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+...  ....+..+
T Consensus         1 h~~~~d~~~~~~l~~A~~~g~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~~   76 (240)
T 3eu9_A            1 HMTHIDDYSTWDIVKATQYGIYERCRELVEAG--YDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIV--DQLGGDLN   76 (240)
T ss_dssp             -CCCCSCGGGCCHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCBTTTT
T ss_pred             CccccccccchHHHHHHHcCChHHHHHHHHcC--CCcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcCCcc--hhhcCCcC
Confidence            34556778889999999999999999999987  567788888999999999999999999999887763  22334568


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||.|+..++.+++++|++.|++++..+..|.||+++|+..++.+++++|+++|++++..+..|.||||
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~  147 (240)
T 3eu9_A           77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLM  147 (240)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             CChhHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHH
Confidence            89999999999999999999999999988889999999999999999999999999999999999999875

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=9.5e-29  Score=163.34  Aligned_cols=140  Identities=28%  Similarity=0.403  Sum_probs=84.1

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~   86 (152)
                      +..|.++|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||
T Consensus        36 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~  110 (285)
T 1wdy_A           36 EEGGWTPLHNAVQMSREDIVELLLRHG--ADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGAD---VNECDFYGFTAFM  110 (285)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---TTCBCTTCCBHHH
T ss_pred             CCCCCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCcccCCHHH
Confidence            445566666666666666666666655  44555566666666666666666666666665555   4444555666666


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCccc----------CCCCCcHHHHHHHcCCHHHHHHHHhc-CCCCCCccccccccC
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACNFLY  151 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~pl~~a~~~~~~~~~~~Ll~~-g~~~~~~~~~~~t~l  151 (152)
                      .|+..++.+++++|++.|++++..          +..|.|||++|+..++.+++++|++. |++++..+..|+|||
T Consensus       111 ~A~~~~~~~~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~l  186 (285)
T 1wdy_A          111 EAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL  186 (285)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCCTTCCCTTSCCHH
T ss_pred             HHHHhCCHHHHHHHHHhCCCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCCCCccCCCCCCHH
Confidence            666666666666666665555544          44455666666666666666666554 555555555555554

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=99.96  E-value=7.7e-29  Score=152.71  Aligned_cols=135  Identities=24%  Similarity=0.306  Sum_probs=125.6

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|+|+.|+..|+.+++++|++.+  .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        28 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  102 (167)
T 3v31_A           28 VINHTDEEGFTPLMWAAAHGQIAVVEFLLQNG--ADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVD---VNEYDWNG  102 (167)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTS
T ss_pred             CcCCCCCCCCCHHHHHHHCCCHHHHHHHHHcC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCcCCCCC
Confidence            56778889999999999999999999999987  67788899999999999999999999999999887   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN  141 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~  141 (152)
                      .||||+|+..++.+++++|++.|++++..+..|.||+++|+..++.+++++|+++++++.
T Consensus       103 ~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~L~~~~~~~~  162 (167)
T 3v31_A          103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQVIESHLLKLL  162 (167)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999876543

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=5.7e-29  Score=170.83  Aligned_cols=146  Identities=19%  Similarity=0.289  Sum_probs=100.9

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhc-ccccccCCCCCchHHHHHHHcC---CHHHHHHHHhcCCCCcc-----cccc
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQL-LKSLSLRNDDDRTLLHVAASCG---HPEVVEILLSVDESANV-----VNAV   77 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~-~~~~~~~~~~g~t~l~~a~~~~---~~~~~~~ll~~~~~~~~-----~~~~   77 (152)
                      +..|.|+|+.|+..|+.+++++|++.+. ...++..+..|.||||+|+..+   +.+++++|++.+.+...     .+..
T Consensus       196 ~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~  275 (373)
T 2fo1_E          196 NKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSE  275 (373)
T ss_dssp             CTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSS
T ss_pred             CCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCCCCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcc
Confidence            3334444444444444444444433320 1234445555666666666655   56666666666555322     1124


Q ss_pred             CCCCChhhHHHHhcCCHHHHHHHHHcC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           78 DEEGWAPIHSAASIGNVTIVEMLLSKG-ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~l~~~~-~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..|.||||+|+..|+.+++++|++.+ ++++..|..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       276 d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~g~~~iv~~Ll~~gad~~~~d~~g~t~l~  351 (373)
T 2fo1_E          276 KYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  351 (373)
T ss_dssp             SCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             cccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccCCCCCCCCHHH
Confidence            567889999999999999999999774 899999999999999999999999999999999999999999999975

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=99.96  E-value=1.9e-28  Score=161.91  Aligned_cols=143  Identities=31%  Similarity=0.363  Sum_probs=77.1

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccC----------CCCCchHHHHHHHcCCHHHHHHHHhc-CCCCcc
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLR----------NDDDRTLLHVAASCGHPEVVEILLSV-DESANV   73 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~----------~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~   73 (152)
                      ..+..|.++|+.|+..|+.+++++|++.+  ..++.+          +..|.||||+|+..++.+++++|++. +.+   
T Consensus       100 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~~~~---  174 (285)
T 1wdy_A          100 ECDFYGFTAFMEAAVYGKVKALKFLYKRG--ANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGAD---  174 (285)
T ss_dssp             CBCTTCCBHHHHHHHTTCHHHHHHHHHTT--CCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHHHHHHHHHTSCCC---
T ss_pred             ccCcccCCHHHHHHHhCCHHHHHHHHHhC--CCcccccccHHHHHhhccCCCcHHHHHHHcCCHHHHHHHHHhcCCC---
Confidence            33444444444444444444444444443  222222          33444555555555555555555543 333   


Q ss_pred             ccccCCCCChhhHHHHhcCC----HHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCcccccc
Q 031838           74 VNAVDEEGWAPIHSAASIGN----VTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACN  148 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~----~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~  148 (152)
                      ++..+..|.||||.|+..++    .+++++|++.|++++.++..|.||||+|+..++.+++++|++ .|++++.++..|+
T Consensus       175 ~~~~~~~g~t~l~~a~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~~~~g~  254 (285)
T 1wdy_A          175 VNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGK  254 (285)
T ss_dssp             TTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSC
T ss_pred             CCccCCCCCCHHHHHHHccccchHHHHHHHHHHcCCCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhccCCCccccCCCCC
Confidence            34445555566666665555    556666666666666666666666666666666666666666 5666666666666


Q ss_pred             ccCC
Q 031838          149 FLYQ  152 (152)
Q Consensus       149 t~l~  152 (152)
                      ||||
T Consensus       255 t~l~  258 (285)
T 1wdy_A          255 TALL  258 (285)
T ss_dssp             CHHH
T ss_pred             cHHH
Confidence            6653

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=99.96  E-value=1.7e-28  Score=154.37  Aligned_cols=131  Identities=21%  Similarity=0.239  Sum_probs=123.2

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|||+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        60 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  134 (192)
T 2rfm_A           60 KLEDKDIEGSTALIWAVKNNRLGIAEKLLSKG--SNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGAN---VNDRNLEG  134 (192)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SSCCCTTC
T ss_pred             ccccccccCccHHHHHHHcCCHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCHHHHHHHHHCCCC---CCCCCCCC
Confidence            56777888999999999999999999999987  67888899999999999999999999999999887   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|+++|
T Consensus       135 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~~  190 (192)
T 2rfm_A          135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVR  190 (192)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhCcHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999875

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=99.96  E-value=7.9e-29  Score=152.38  Aligned_cols=131  Identities=30%  Similarity=0.351  Sum_probs=119.6

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      +++..+..+.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  108 (165)
T 3twr_A           34 NCRDIEGRQSTPLHFAAGYNRVSVVEYLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLVKHGAV---VNVADLWK  108 (165)
T ss_dssp             TCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTC
T ss_pred             CccccccCCCCHHHHHHHcChHHHHHHHHhcC--CCCCccCCCCCCHHHHHHHcCcHHHHHHHHhCCCC---CCCcCCCC
Confidence            34556667889999999999999999999987  67888999999999999999999999999999887   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA  138 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~  138 (152)
                      .||||+|+..++.+++++|++.|++++.++..|.||+++|.. ++.+++++|+++|+
T Consensus       109 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~a~~-~~~~i~~~L~~~gA  164 (165)
T 3twr_A          109 FTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKD-GDTDIQDLLRGDAA  164 (165)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTGGGSCT-TCHHHHHHHHTC--
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCChhHhHhc-CChHHHHHHhhccc
Confidence            999999999999999999999999999999999999999877 89999999999986

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=99.96  E-value=4.8e-29  Score=171.18  Aligned_cols=149  Identities=23%  Similarity=0.294  Sum_probs=134.2

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|||+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|+..+.....++..+..|
T Consensus       158 ~vn~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--a~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~~d~~g  235 (373)
T 2fo1_E          158 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  235 (373)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CCcCCCCCCCCHHHHHHHcChHHHHHHHHHCC--CCCcccCCCCCCHHHHHHHCCCHHHHHHHHhcCccccChhhcCCCC
Confidence            67888899999999999999999999999987  6788889999999999999999999999998762111167778899


Q ss_pred             ChhhHHHHhcC---CHHHHHHHHHcCCCCcc--------cCCCCCcHHHHHHHcCCHHHHHHHHhcC-CCCCCccccccc
Q 031838           82 WAPIHSAASIG---NVTIVEMLLSKGADVNL--------KNDGGRTALHYAASKGWLKIVELLISRG-AKINSKDKACNF  149 (152)
Q Consensus        82 ~t~l~~a~~~~---~~~~~~~l~~~~~~~~~--------~~~~~~~pl~~a~~~~~~~~~~~Ll~~g-~~~~~~~~~~~t  149 (152)
                      .||||+|+..+   +.+++++|++.|++++.        .+..|.||||+|+..++.+++++|++++ ++++..+..|.|
T Consensus       236 ~t~L~~A~~~~~~~~~~~v~~Ll~~g~~~~~~~~~~~~~~d~~g~t~Lh~A~~~g~~~~v~~Ll~~~~~~~n~~d~~g~T  315 (373)
T 2fo1_E          236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  315 (373)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             CCHHHHHHHhCCcchHHHHHHHHHCCCCcccccccccCcccccCCCHHHHHHHhCCHHHHHHHHHhcCCCccCcCCCCCC
Confidence            99999999988   89999999999999876        5678999999999999999999999876 999999999999


Q ss_pred             cCC
Q 031838          150 LYQ  152 (152)
Q Consensus       150 ~l~  152 (152)
                      |||
T Consensus       316 pL~  318 (373)
T 2fo1_E          316 PIM  318 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            986

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=99.96  E-value=1.6e-29  Score=168.00  Aligned_cols=138  Identities=18%  Similarity=0.150  Sum_probs=109.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC-ChhhHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG-WAPIHS   87 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~-~t~l~~   87 (152)
                      .|.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..| .||||+
T Consensus        61 ~g~t~L~~A~~~g~~~~v~~Ll~~g--a~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~g~~t~L~~  135 (285)
T 3kea_A           61 ENEFPLHQAATLEDTKIVKILLFSG--LDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWR---LMFYGKTGWKTSFYH  135 (285)
T ss_dssp             TTCCHHHHHTTSSSCHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHCGG---GGGCSSSGGGSHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHHCC--CCCCCcCCCCCcHHHHHHHcCCHHHHHHHHhcCCC---CCccCCCCCCCHHHH
Confidence            4788888888888888888888876  56777778888888888888888888888887776   56667777 688888


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccccc-CC
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFL-YQ  152 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~-l~  152 (152)
                      |+..++.+++++|++.|.+.... ..|.||||+|+..++.+++++|+++|++++.++..|.|| ||
T Consensus       136 A~~~~~~~~v~~Ll~~g~~~~~~-~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n~~~~~g~t~~L~  200 (285)
T 3kea_A          136 AVMLNDVSIVSYFLSEIPSTFDL-AILLSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIK  200 (285)
T ss_dssp             HHHTTCHHHHHHHHTTSCTTCCC-STHHHHHHHHHHTTCHHHHHHHHHHHHHTCTTCCCBCCTTHH
T ss_pred             HHHcCCHHHHHHHHhCCCccccc-cCCccHHHHHHHcChHHHHHHHHHcCCCCCcccCCCCChHHH
Confidence            88888888888888887665322 267788888888888888888888888888888888887 64

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=99.96  E-value=1.2e-28  Score=162.63  Aligned_cols=142  Identities=19%  Similarity=0.256  Sum_probs=117.2

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCC--------------CCchHHHHHHHcCCHHHHHHHHh---cC
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRND--------------DDRTLLHVAASCGHPEVVEILLS---VD   68 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--------------~g~t~l~~a~~~~~~~~~~~ll~---~~   68 (152)
                      .+..|.||||.|+..|+.+++++|++.+  .+++.++.              .|.||||+|+..++.+++++|++   .+
T Consensus        97 ~d~~g~tpL~~A~~~g~~~~v~~Ll~~g--a~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~Ll~~~~~g  174 (273)
T 2pnn_A           97 SYYKGQTALHIAIERRNMTLVTLLVENG--ADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQP  174 (273)
T ss_dssp             TTTTTCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBCSGGGSSCSSSCCCCSCBSHHHHHHHTTCHHHHHHHHHCSSCC
T ss_pred             ccCCCCCHHHHHHHcCCHHHHHHHHHCC--CCcCccccccccccccccccccCCCCHHHHHHHcCCHHHHHHHHhcccCC
Confidence            4568999999999999999999999987  56777765              79999999999999999999999   77


Q ss_pred             CCCccccccCCCCChhhHHHHhcCC---------HHHHHHHHHcCCCCc-------ccCCCCCcHHHHHHHcCCHHHHHH
Q 031838           69 ESANVVNAVDEEGWAPIHSAASIGN---------VTIVEMLLSKGADVN-------LKNDGGRTALHYAASKGWLKIVEL  132 (152)
Q Consensus        69 ~~~~~~~~~~~~~~t~l~~a~~~~~---------~~~~~~l~~~~~~~~-------~~~~~~~~pl~~a~~~~~~~~~~~  132 (152)
                      .+   ++.++..|.||||+|+..++         .+++++|++.|++++       .+|..|.|||++|+..|+.+++++
T Consensus       175 ad---~~~~d~~g~tpLh~A~~~~~~~~~~~~~~~~~v~~Ll~~ga~~n~~~~~~~~~d~~g~TpL~~A~~~g~~~iv~~  251 (273)
T 2pnn_A          175 AD---ISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAY  251 (273)
T ss_dssp             CC---TTCCCTTSCCHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHHHCTTCCGGGCCCTTSCCHHHHHHHTTCHHHHHH
T ss_pred             CC---ceeeCCCCCcHHHHHHHccCcchhHHHHHHHHHHHHHHhhhhcccccccccccCCCCCCHHHHHHHhChHHHHHH
Confidence            77   77888999999999999888         799999999998886       489999999999999999999999


Q ss_pred             HHhcCC-CCCCccccccccCC
Q 031838          133 LISRGA-KINSKDKACNFLYQ  152 (152)
Q Consensus       133 Ll~~g~-~~~~~~~~~~t~l~  152 (152)
                      |+++|+ ++......+.+|.+
T Consensus       252 Ll~~ga~dp~~~~~~~~~~~~  272 (273)
T 2pnn_A          252 ILQREIHEPECRHAAAHHHHH  272 (273)
T ss_dssp             HHHHHTC--------------
T ss_pred             HHHCCCCCchhhhhhhhhccC
Confidence            999998 88887777776643

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=99.96  E-value=4.9e-29  Score=163.39  Aligned_cols=144  Identities=26%  Similarity=0.327  Sum_probs=123.8

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHH----hhcccccccCC----CCCchHHHHHH---HcCCHHHHHHHHhcCCCCcc--
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSK----QQLLKSLSLRN----DDDRTLLHVAA---SCGHPEVVEILLSVDESANV--   73 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~----~~~~~~~~~~~----~~g~t~l~~a~---~~~~~~~~~~ll~~~~~~~~--   73 (152)
                      +..+.++|+.|++.|+.+.++.|++    .+  ..++..+    ..|.||||+|+   ..|+.+++++|+..+.+...  
T Consensus         2 ~~~~~~~L~~A~~~g~~~~v~~ll~~l~~~~--~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g~~~~~~~   79 (260)
T 3jxi_A            2 KVFNRPILFDIVSRGSPDGLEGLLSFLLTHK--KRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMR   79 (260)
T ss_dssp             CCCCHHHHHHHHHHTCGGGGTTHHHHHHHHT--CCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHHHHTTCHH
T ss_pred             ccchHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhcccccchH
Confidence            3568899999999999997776666    54  4455443    67999999999   67999999999987643211  


Q ss_pred             ------ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccC--------------CCCCcHHHHHHHcCCHHHHHHH
Q 031838           74 ------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN--------------DGGRTALHYAASKGWLKIVELL  133 (152)
Q Consensus        74 ------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~--------------~~~~~pl~~a~~~~~~~~~~~L  133 (152)
                            .+..+..|.||||+|+..|+.+++++|++.|++++..+              ..|.||||+|+..|+.+++++|
T Consensus        80 ~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~g~~~~v~~L  159 (260)
T 3jxi_A           80 EFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL  159 (260)
T ss_dssp             HHHTCCBCCSSEESBCHHHHHHHTTCHHHHHHHHHTTCCTTCCCEECCCSSSCCCCSCCSCSSHHHHHHHTTCHHHHHHH
T ss_pred             hhhcccccccccCCCCHHHHHHHcCCHHHHHHHHhCCCCcCccccccccCcccccccccCCCCHHHHHHHcCCHHHHHHH
Confidence                  34445589999999999999999999999999999988              6899999999999999999999


Q ss_pred             Hh---cCCCCCCccccccccCC
Q 031838          134 IS---RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       134 l~---~g~~~~~~~~~~~t~l~  152 (152)
                      ++   +|++++.++..|+||||
T Consensus       160 l~~~~~ga~~~~~d~~g~TpLh  181 (260)
T 3jxi_A          160 TENGHKQADLRRQDSRGNTVLH  181 (260)
T ss_dssp             HHCSSCCCCTTCCCTTSCCHHH
T ss_pred             HhccccCCCCcccCCCCCcHHH
Confidence            99   99999999999999986

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=99.96  E-value=9.6e-28  Score=146.22  Aligned_cols=128  Identities=24%  Similarity=0.335  Sum_probs=120.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|+|+. +..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus        28 ~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g  101 (156)
T 1bd8_A           28 HPDALNRFGKTALQV-MMFGSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTG  101 (156)
T ss_dssp             CTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTS
T ss_pred             CccccCCCCCcHHHH-HHcCCHHHHHHHHHCC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCC
Confidence            677888899999999 9999999999999987  67888999999999999999999999999999877   67778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                      .||||+|+..++.+++++|++. ++++.++..|.||+++|+..++.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~~v~~Ll~~-~~~~~~~~~g~t~l~~A~~~~~~~~v~~Ll~~  155 (156)
T 1bd8_A          102 ALPIHLAVQEGHTAVVSFLAAE-SDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHTT-SCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             CcHHHHHHHhChHHHHHHHHhc-cCCCCcCCCCCCHHHHHHHcCcHHHHHHHHhh
Confidence            9999999999999999999998 99999999999999999999999999999874

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=99.96  E-value=1.5e-27  Score=145.10  Aligned_cols=123  Identities=33%  Similarity=0.389  Sum_probs=115.5

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..|.|+|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.|||
T Consensus        30 ~~~~g~t~L~~A~~~~~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L  104 (153)
T 1awc_B           30 TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHH
T ss_pred             cCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCCCCCCCCHHHHHHHcChHHHHHHHHHcCCC---CCCCCCCCCCHH
Confidence            3567899999999999999999999987  67788899999999999999999999999998877   677788999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~L  133 (152)
                      |+|+..++.+++++|++.|++++.++..|.||+++|+..++.+++++|
T Consensus       105 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L  152 (153)
T 1awc_B          105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHcCCCccccCCCCCCHHHHHHHcCCHHHHHHh
Confidence            999999999999999999999999999999999999999999999887

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.96  E-value=1.7e-29  Score=158.33  Aligned_cols=135  Identities=16%  Similarity=0.155  Sum_probs=113.1

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCC-CCCchHHHHHHHcCCH----HHHHHHHhcCCCCccccccCCCCChhh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHP----EVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .++|+.|++.|+++.++.++..+    .+.++ ..|+||||+|+..++.    +++++|++.|++   ++.++..|.|||
T Consensus         7 ~~~l~~Aa~~g~~~~~~~l~~~~----~~~~~~~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~Gad---vn~~d~~g~TpL   79 (186)
T 3t8k_A            7 YRTVSAAAMLGTYEDFLELFEKG----YEDKESVLKSNILYDVLRNNNDEARYKISMFLINKGAD---IKSRTKEGTTLF   79 (186)
T ss_dssp             CSSHHHHHHHSCHHHHHHHHHHS----SSCHHHHHTTTHHHHHTTCSCHHHHHHHHHHHHHTTCC---SSCCCTTCCCTH
T ss_pred             ccHHHHHHHcCCHHHHHHHHhcC----cccccccCCCCHHHHHHHcCCcchHHHHHHHHHHCCCC---CCCCCCCCCcHH
Confidence            46789999999999998888765    23444 6689999999988864    588999988888   677788999999


Q ss_pred             HHHHhcCC------HHHHHHHHHcCCCCcccCCCCC-cHHHHHHHcC-----CHHHHHHHHh-cCCCCCCccccccccCC
Q 031838           86 HSAASIGN------VTIVEMLLSKGADVNLKNDGGR-TALHYAASKG-----WLKIVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus        86 ~~a~~~~~------~~~~~~l~~~~~~~~~~~~~~~-~pl~~a~~~~-----~~~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                      |+|+..++      .+++++|++.|++++.+|..|. ||||+|+..+     ..+++++|++ +|++++.+|..|+||||
T Consensus        80 h~a~~~~~~~~~~~~~iv~~Ll~~Gadin~~d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~  159 (186)
T 3t8k_A           80 FPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALE  159 (186)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHTTCCSSSCBGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHcCCcchhhHHHHHHHHHHCCCCCCccCCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHH
Confidence            99998876      5788999999999999999999 9999998844     3468899998 89999999999999985

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.96  E-value=5.8e-29  Score=148.73  Aligned_cols=132  Identities=28%  Similarity=0.334  Sum_probs=107.8

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |. ..+..|.|+||.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|
T Consensus         3 d~-~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g   76 (137)
T 3c5r_A            3 DP-FTNHRGETLLHIASIKGDIPSVEYLLQNG--SDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKAL---VNTTGYQN   76 (137)
T ss_dssp             -C-CCCTTCCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCGGG
T ss_pred             CC-CcCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCc---ccCcCCCC
Confidence            45 56778889999999999999999999876  57778888899999999999999999999988776   66677888


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      .||||+|+..++.+++++|++.|++++.+|..|.||+++|+..+..+++++|.+.+..
T Consensus        77 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~~A~~~~~~~~l~~l~~~~~s  134 (137)
T 3c5r_A           77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESS  134 (137)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGGGCCCHHHHHHHSCC------
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHHHHhhccHHHHHhhccccccC
Confidence            8999999999999999999998999998888999999999888878887777665543

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=99.96  E-value=9.3e-29  Score=160.51  Aligned_cols=134  Identities=28%  Similarity=0.424  Sum_probs=122.6

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      ..+.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..|+.+++++|++.+.+   ++.+|..|.||||+
T Consensus        35 ~~~~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~d~~g~tpL~~  109 (239)
T 1ycs_B           35 PLPLALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHC  109 (239)
T ss_dssp             --CHHHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHH
T ss_pred             chhhHHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHH
Confidence            45689999999999999999999987  57889999999999999999999999999999887   67888999999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCC-cHHHHH--HHcCCHHHHHHHHhcCCCCCCcccc
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYA--ASKGWLKIVELLISRGAKINSKDKA  146 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~pl~~a--~~~~~~~~~~~Ll~~g~~~~~~~~~  146 (152)
                      |+..++.+++++|++.|++++..+..+. ||+++|  +..|+.+++++|+++|++++..+..
T Consensus       110 A~~~~~~~~v~~Ll~~ga~~~~~~~~~~~t~l~~a~~~~~g~~~~~~~Ll~~~a~~~~~~~~  171 (239)
T 1ycs_B          110 AASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKG  171 (239)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHHHHTTTTGGG
T ss_pred             HHHcCCHHHHHHHHHcCCCcceecCCCCcchHHHHHHhhhccHHHHHHHHHhhhcccccccc
Confidence            9999999999999999999999988777 999999  7788999999999999998877554

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=99.95  E-value=1.7e-27  Score=153.96  Aligned_cols=146  Identities=29%  Similarity=0.355  Sum_probs=91.9

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccc-cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLS-LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~-~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      |++..+..|.++|+.|+..|+.+++++|++.+  ..+. ..+..|.||||+|+..++.+++++|++.+.+   .+..+..
T Consensus        34 ~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~--~~~~~~~~~~~~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~  108 (240)
T 3eu9_A           34 DVRQPDKENVTLLHWAAINNRIDLVKYYISKG--AIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKYGAD---PSLIDGE  108 (240)
T ss_dssp             CTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCBTTTTBCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTT
T ss_pred             CcCCCCCCCCCHHHHHHHhCCHHHHHHHHHcC--CcchhhcCCcCCChhHHHHHcCCHHHHHHHHHcCCC---CcccCCC
Confidence            44455556666666666666666666666655  2222 2233356666666666666666666665554   3444555


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCC----------------------------------CcccCC-CCCcHHHHHHHcC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGAD----------------------------------VNLKND-GGRTALHYAASKG  125 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~----------------------------------~~~~~~-~~~~pl~~a~~~~  125 (152)
                      |.||||.|+..++.+++++|++.|++                                  ++..+. .|.|||++|+..+
T Consensus       109 g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~  188 (240)
T 3eu9_A          109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAG  188 (240)
T ss_dssp             SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCSSTTHHHHHHTTCCTTCCCTTTCCCHHHHHHHHT
T ss_pred             CCCHHHHHHHcCHHHHHHHHHhcCCCccccCCCCCcHHHHHHHhCChHHHHHHHHhcCCCcchhhccCCCcHHHHHHHcC
Confidence            55666666666666666666655544                                  444443 5667788888888


Q ss_pred             CHHHHHHHHhcCCCCCCccccccccCC
Q 031838          126 WLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +.+++++|+++|++++..+..|+||||
T Consensus       189 ~~~~v~~Ll~~g~~~~~~~~~g~t~l~  215 (240)
T 3eu9_A          189 NTTVISLLLEAGANVDAQNIKGESALD  215 (240)
T ss_dssp             CHHHHHHHHHHTCCTTCBCTTSCBHHH
T ss_pred             CHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            888888888888888888888888764

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.95  E-value=1.7e-27  Score=161.39  Aligned_cols=141  Identities=29%  Similarity=0.440  Sum_probs=111.9

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCC-CCchHHHHHHHcCCHHHHHHHHhcCCCCcc---------------
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRND-DDRTLLHVAASCGHPEVVEILLSVDESANV---------------   73 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------------   73 (152)
                      ++++|+.|++.|++++|++|++.+  .+++.++. .|+||||+|+..|+.+++++|+++++++..               
T Consensus        25 ~~t~L~~Av~~g~~~~V~~LL~~G--advn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~  102 (337)
T 4g8k_A           25 DNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIA  102 (337)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CChHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhhhccCCCchhHHHHhc
Confidence            568899999999999999999887  56776654 488999999999999999999988765432               


Q ss_pred             ---------------ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCccc----------CCCCCcHHHHHHHcCCHH
Q 031838           74 ---------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK----------NDGGRTALHYAASKGWLK  128 (152)
Q Consensus        74 ---------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~----------~~~~~~pl~~a~~~~~~~  128 (152)
                                     ++..+..|.||++.|+..++.++++++++.|++++..          +..|.||||+|+..|+.+
T Consensus       103 ~~~~~~~~~~~~~~~~~~~d~~g~t~l~~A~~~~~~~~~~~ll~~ga~~~~~~~~~~~~~~~~~~g~T~L~~A~~~g~~~  182 (337)
T 4g8k_A          103 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  182 (337)
T ss_dssp             TCHHHHHHHHTTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCC-----CTTCSCCHHHHHHHHTCHH
T ss_pred             ccchhhHHhhhccchhhhhccCCCCHHHHHHHcCcHHHHHHHHHcCCCcchhhccccccccccCCCCcHHHHHHHCCCHH
Confidence                           3455677888888888888888888888888776543          345778888888888888


Q ss_pred             HHHHHHh-cCCCCCCccccccccCC
Q 031838          129 IVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       129 ~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                      ++++|++ .|++++.++..|.||++
T Consensus       183 ~v~~LL~~~gad~n~~d~~g~t~l~  207 (337)
T 4g8k_A          183 VLKILLDEMGADVNACDNMGRNALI  207 (337)
T ss_dssp             HHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             HHHHHHhccCCCcCccCCCCCcHHH
Confidence            8888885 58888888888887763

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=99.95  E-value=1.3e-27  Score=142.91  Aligned_cols=110  Identities=35%  Similarity=0.476  Sum_probs=105.2

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 031838           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (152)
Q Consensus        40 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~  119 (152)
                      .++..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||||
T Consensus         5 ~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~L~   81 (137)
T 3c5r_A            5 FTNHRGETLLHIASIKGDIPSVEYLLQNGSD---PNVKDHAGWTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLH   81 (137)
T ss_dssp             CCCTTCCCHHHHHHHHTCHHHHHHHHHTTCC---SCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCGGGCCHHH
T ss_pred             CcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHHHHHHcCCHHHHHHHHHcCCcccCcCCCCCCHHH
Confidence            6788899999999999999999999998877   6777889999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          120 YAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +|+..++.+++++|+++|++++.+|..|.||||
T Consensus        82 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~tpl~  114 (137)
T 3c5r_A           82 DAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVD  114 (137)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999999999986

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.95  E-value=2.6e-27  Score=158.40  Aligned_cols=132  Identities=21%  Similarity=0.246  Sum_probs=121.0

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhccccccc------CCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccCCC
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSL------RNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~------~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      ..++|+.|+..|+++.+++|++.+  .+++.      .+..|.||||+|+..   ++.+++++|+.++.+   ++.+|..
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g--~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---vn~~d~~  225 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANG--QDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGH---LDAKAAD  225 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSC---TTCCCTT
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcC--CcccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCC---CCCCCCC
Confidence            447799999999999999999887  45554      588899999999997   899999999999887   6778899


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |.||||+|+..|+.+++++|++.|++++.+|..|.|||++|+..++.+++++|+++|++      .|.||||
T Consensus       226 G~TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~~A~~~~~~~iv~~Ll~~ga~------~g~tpLh  291 (301)
T 2b0o_E          226 GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIARKKHHKECEELLEQAQAG------TFAFPLH  291 (301)
T ss_dssp             CCCHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHHHHHHHTCHHHHHHHHHHHHH------TTSSCCC
T ss_pred             CCCHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHhcCC------CCCChhH
Confidence            99999999999999999999999999999999999999999999999999999999986      5789987

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.95  E-value=1e-28  Score=158.55  Aligned_cols=137  Identities=23%  Similarity=0.282  Sum_probs=112.5

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhc-CCCCccccccCCCCChhh
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSV-DESANVVNAVDEEGWAPI   85 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~-~~~~~~~~~~~~~~~t~l   85 (152)
                      +..|.++|+.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|+.. +.+   ++.++..|.|||
T Consensus        70 ~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~---~~~~d~~g~tpL  144 (222)
T 3ehr_A           70 AESIDNPLHEAAKRGNLSWLRECLDNR--VGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIE---LNQQNKLGDTAL  144 (222)
T ss_dssp             EEEESCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCC---CCCCCTTSCCHH
T ss_pred             ccccccccccccccCcHHHHHHHHhCC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCC---ccccCCCCCCHH
Confidence            345789999999999999999999987  67888899999999999999999999999987 666   677889999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccc
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN  148 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  148 (152)
                      |+|+..|+.+++++|++.|++++.++..|.||+++|+..++.++++.|++.|+.....+..+.
T Consensus       145 ~~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~~l~~l~~~~~~~~~~~~~~~  207 (222)
T 3ehr_A          145 HAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY  207 (222)
T ss_dssp             HHHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHHHCCSHHHHHHHC-----------------
T ss_pred             HHHHHcCCHHHHHHHHHcCCCCccccCCCCCHHHHhcchhHHHHHHHHhccchhhhccchhhh
Confidence            999999999999999999999999999999999999999999999999999999888776543

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=99.95  E-value=9.9e-28  Score=143.25  Aligned_cols=113  Identities=26%  Similarity=0.349  Sum_probs=107.4

Q ss_pred             cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCC-C
Q 031838           36 KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDG-G  114 (152)
Q Consensus        36 ~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~-~  114 (152)
                      .+++..+..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+. ++.+++++|++.|++++.++.. |
T Consensus         3 ~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~-~~~~~v~~Ll~~g~~~~~~~~~~g   78 (136)
T 1d9s_A            3 PGIHMLGGSSDAGLATAAARGQVETVRQLLEAGAD---PNALNRFGRRPIQVMMM-GSAQVAELLLLHGAEPNCADPATL   78 (136)
T ss_dssp             CCCSCCCCCCSCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCTTTTTSTT-SCHHHHHHHHHHTCCSSCCBTTTT
T ss_pred             CCccCCCCCCccHHHHHHHcCCHHHHHHHHHcCCC---cCCcCCCCCCHHHHHHc-CCHHHHHHHHHCCCCCCCcCCCCC
Confidence            46788899999999999999999999999998877   67778899999999999 9999999999999999999999 9


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          115 RTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       115 ~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        79 ~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  116 (136)
T 1d9s_A           79 TRPVHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVD  116 (136)
T ss_dssp             BCHHHHHHHHTCHHHHHHHHHTCCCCCCCSSSSSCHHH
T ss_pred             CCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHH
Confidence            99999999999999999999999999999999999985

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=2.8e-27  Score=138.95  Aligned_cols=112  Identities=33%  Similarity=0.477  Sum_probs=93.8

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhH
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH   86 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~   86 (152)
                      ...++++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~--~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~~~~d~~g~tpL~   78 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLL   78 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTT--CCTTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCC---TTCCCTTSCCHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcC--CCcCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCHHH
Confidence            356778999999999999999988876  56778888889999999999999999999888776   6677788889999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~  123 (152)
                      +|+..++.+++++|++.|++++.++..|.||+++|..
T Consensus        79 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~~A~~  115 (123)
T 3aaa_C           79 SAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDN  115 (123)
T ss_dssp             HHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHCCC
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHHHhCC
Confidence            9999999999999998888888888889999998843

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=99.95  E-value=7.3e-27  Score=137.20  Aligned_cols=108  Identities=31%  Similarity=0.355  Sum_probs=100.9

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 031838           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (152)
Q Consensus        42 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a  121 (152)
                      +..|.||||+|+..++.++++++++.+.+   ++..+..|.||||+|+..++.+++++|++.|++++.+|..|.||||+|
T Consensus         4 ~~~~~~~l~~A~~~~~~~~v~~ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~tpL~~A   80 (123)
T 3aaa_C            4 GSMCDKEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSA   80 (123)
T ss_dssp             ---CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCCTTSSCHHHHHHHTTCHHHHHHHHTTTCCTTCCCTTSCCHHHHH
T ss_pred             ccccchHHHHHHHcCCHHHHHHHHHcCCC---cCccCCCCCcHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            45678999999999999999999998877   677788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          122 ASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..++.+++++|+++|++++.++..|.||||
T Consensus        81 ~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  111 (123)
T 3aaa_C           81 VYEGHVSCVKLLLSKGADKTVKGPDGLTAFE  111 (123)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999985

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=99.94  E-value=9.8e-28  Score=150.28  Aligned_cols=132  Identities=16%  Similarity=0.188  Sum_probs=117.0

Q ss_pred             CCCChHHHHHHHhCCH----HHHHHHHHhhcccccccCCCCCchHHHHHHHcCC------HHHHHHHHhcCCCCcccccc
Q 031838            8 TIKDKDLFKAAETGDS----STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH------PEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~----~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~------~~~~~~ll~~~~~~~~~~~~   77 (152)
                      ..|.||||.|+..|+.    +++++|++.+  .+++.++..|+||||+|+..++      .+++++|++.|++   ++.+
T Consensus        36 ~~g~T~Lh~A~~~~~~~~~~~iv~~Ll~~G--advn~~d~~g~TpLh~a~~~~~~~~~~~~~iv~~Ll~~Gad---in~~  110 (186)
T 3t8k_A           36 VLKSNILYDVLRNNNDEARYKISMFLINKG--ADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGAD---ITAL  110 (186)
T ss_dssp             HHTTTHHHHHTTCSCHHHHHHHHHHHHHTT--CCSSCCCTTCCCTHHHHHHHCTTCHHHHHHHHHHHHHTTCC---SSSC
T ss_pred             cCCCCHHHHHHHcCCcchHHHHHHHHHHCC--CCCCCCCCCCCcHHHHHHHcCCcchhhHHHHHHHHHHCCCC---CCcc
Confidence            5689999999999975    4899999987  7889999999999999999886      5789999999988   7788


Q ss_pred             CCCCC-hhhHHHHhcC-----CHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcc
Q 031838           78 DEEGW-APIHSAASIG-----NVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD  144 (152)
Q Consensus        78 ~~~~~-t~l~~a~~~~-----~~~~~~~l~~-~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~  144 (152)
                      |..|. ||||+|+..+     +.+++++|++ .|++++.+|..|.|||++|+..++.+++++|.++....+.++
T Consensus       111 d~~g~ttpLh~A~~~~~~~~~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~~  184 (186)
T 3t8k_A          111 YKPYKIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLKE  184 (186)
T ss_dssp             BGGGTBCTTGGGGGCCSCHHHHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCCC
T ss_pred             CCCcCchHHHHHHHcCCChhhHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhccc
Confidence            88999 9999999844     4568999999 899999999999999999999999999999998766555554

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=99.94  E-value=1.8e-26  Score=152.70  Aligned_cols=131  Identities=27%  Similarity=0.346  Sum_probs=122.2

Q ss_pred             CcCcCCCCCChHHHHHH-----HhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc
Q 031838            2 DMDIDQTIKDKDLFKAA-----ETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA   76 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~-----~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~   76 (152)
                      |++..+..|.+||+.|+     ..++.+.++.|++.+  ......+..|.||||+|+..|+.+++++|++.+.+   ++.
T Consensus       137 ~~~~~~~~g~tpL~~a~~~~~~~~~~~~~v~~Ll~~g--~~~~~~~~~g~tpLh~A~~~g~~~~v~~Ll~~gad---~n~  211 (276)
T 4hbd_A          137 KVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLG--NINAKASQAGQTALMLAVSHGRVDVVKALLACEAD---VNV  211 (276)
T ss_dssp             CTTCCCTTSCCHHHHGGGCCCCSHHHHHHHHHHHHHS--CTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTC
T ss_pred             cCCCCCCCCCCHHHHHHHHHhhhhhhHHHHHHHHHcC--CCccccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC---CCC
Confidence            67788899999999999     779999999999987  56667788899999999999999999999999888   677


Q ss_pred             cCCCCChhhHHHHhcCCHHHHHHHHH-cCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           77 VDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        77 ~~~~~~t~l~~a~~~~~~~~~~~l~~-~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      +|..|.||||+|+..|+.+++++|++ .|++++.+|..|.|||++|+..|+.+++++|++++
T Consensus       212 ~d~~G~TpLh~A~~~g~~~iv~~Ll~~~gad~~~~d~~g~TpL~~A~~~g~~~iv~~Ll~~~  273 (276)
T 4hbd_A          212 QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTDRDGSTALMVALDAGQSEIASMLYSRM  273 (276)
T ss_dssp             CCTTSCCHHHHHHHHTCHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHHC
T ss_pred             CCCCCCCHHHHHHHCCCHHHHHHHHhcCCCCCcCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence            88999999999999999999999999 79999999999999999999999999999999875

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=99.94  E-value=6.5e-26  Score=153.59  Aligned_cols=135  Identities=26%  Similarity=0.292  Sum_probs=102.6

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCC----HHHHHHHHhcCCCCccccccCCC
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGH----PEVVEILLSVDESANVVNAVDEE   80 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~----~~~~~~ll~~~~~~~~~~~~~~~   80 (152)
                      ..+..|.|||+.|+..|+.++|++|+++. +.+++.++..|.|+++.++..+.    ..++++|++.|.+   ++.++..
T Consensus       163 ~~~~~g~T~L~~A~~~g~~~~v~~LL~~~-gad~n~~d~~g~t~l~~~~~~~~~~~~~~i~~lLl~~gad---~n~~d~~  238 (337)
T 4g8k_A          163 RLRKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGER  238 (337)
T ss_dssp             -CTTCSCCHHHHHHHHTCHHHHHHHHHHS-CCCTTCCCTTSCCHHHHHHHHSCTTTHHHHHHHHHHTTCC---TTCCCGG
T ss_pred             cccCCCCcHHHHHHHCCCHHHHHHHHhcc-CCCcCccCCCCCcHHHHHHHHcCcccHHHHHHHHHHCCCC---CCCcCCC
Confidence            34556889999999999999999999753 36677777778888777665443    3466777777776   5666777


Q ss_pred             CChhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCc
Q 031838           81 GWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSK  143 (152)
Q Consensus        81 ~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~  143 (152)
                      |.||||+|+..++.+++++|+.. |++++.+|..|.||||+|+..|+.+++++|+++|++++.+
T Consensus       239 g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~~~g~~~iv~~Ll~~GAd~n~~  302 (337)
T 4g8k_A          239 GKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCG  302 (337)
T ss_dssp             GCCHHHHHHHTTCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHTTSCSSTTC
T ss_pred             CCCHHHHHHHhhhhHHHHHHHHhcCCcccCcCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCC
Confidence            78888888888888888877765 6777777888888888888888888888888888777654

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.94  E-value=1.9e-25  Score=147.93  Aligned_cols=129  Identities=20%  Similarity=0.223  Sum_probs=117.2

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccc----cccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccCCCCCh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEGWA   83 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~t   83 (152)
                      .++|+.|+..|+++.++.+++.+....    ++..+..|.||||+|+..   ++.+++++|++.+.+   ++.+|..|.|
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~---in~~d~~g~T  207 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGST  207 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCC
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCC---ccccCCCCCC
Confidence            468999999999999999999874322    455678899999999999   899999999999988   7788899999


Q ss_pred             hhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCC
Q 031838           84 PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINS  142 (152)
Q Consensus        84 ~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~  142 (152)
                      |||+|+..|+.+++++|++.|++++.+|..|.|||++|+..++.+++++|+++|++...
T Consensus       208 pLh~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~  266 (278)
T 1dcq_A          208 ALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFN  266 (278)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCC
Confidence            99999999999999999999999999999999999999999999999999999986533

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.94  E-value=5e-26  Score=155.58  Aligned_cols=138  Identities=24%  Similarity=0.304  Sum_probs=115.2

Q ss_pred             CCChHHHHHHHh-CCHHHHHHHHHhhcccccccCC--CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            9 IKDKDLFKAAET-GDSSTFKSLSKQQLLKSLSLRN--DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         9 ~~~~~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~--~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+.++|+.|+.. |+++++++|++.+  .+++..+  ..|.||||+|+..++.+++++|+..+.+   ++..|..|.|||
T Consensus       198 ~~~t~L~~Aa~~~g~~~~v~~LL~~G--advn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gad---vn~~d~~G~TpL  272 (368)
T 3jue_A          198 HPGALLFRASGHPPSLPTMADALAHG--ADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGAN---VNQADSAGRGPL  272 (368)
T ss_dssp             CHHHHHHHHTSSSCCHHHHHHHHHTT--CCTTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred             CCCcHHHHHHHccCCHHHHHHHHHcC--CCCCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCCCCCCCCCHH
Confidence            345799999999 9999999999987  5666666  8899999999999999999999999888   677889999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC---CCCCCccccccccC
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG---AKINSKDKACNFLY  151 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g---~~~~~~~~~~~t~l  151 (152)
                      |+|+..++.+++++|++.|++++..|..|.|||++|+..++.+++++|+..+   ++....+..+.|++
T Consensus       273 h~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~~A~~~g~~~iv~lLl~~~~~~~~~~~~~~~~~t~l  341 (368)
T 3jue_A          273 HHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYL  341 (368)
T ss_dssp             HHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHC----------------
T ss_pred             HHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCcccccccCCCCCCHH
Confidence            9999999999999999999999999999999999999999999999999876   44444556666665

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=99.94  E-value=4.7e-26  Score=135.93  Aligned_cols=108  Identities=40%  Similarity=0.527  Sum_probs=101.8

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHH
Q 031838           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA  121 (152)
Q Consensus        42 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a  121 (152)
                      ...+.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+..++.+++++|++.|++++..+..|.||||+|
T Consensus        11 ~~~~~t~l~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~d~~g~t~L~~A   87 (136)
T 2jab_A           11 GSDLGKKLLEAARAGQDDEVRILMANGAD---VNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLA   87 (136)
T ss_dssp             -CHHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred             cccccHHHHHHHHhCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCHHHHH
Confidence            44578999999999999999999999877   677788999999999999999999999999999999999999999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          122 ASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..++.+++++|+++|++++.++..|.||||
T Consensus        88 ~~~~~~~~v~~Ll~~g~~~~~~~~~g~tpl~  118 (136)
T 2jab_A           88 AFIGHLEIAEVLLKHGADVNAQDKFGKTAFD  118 (136)
T ss_dssp             HHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHcCCHHHHHHHHHcCCCCcCcCCCCCCHHH
Confidence            9999999999999999999999999999985

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.3e-25  Score=144.86  Aligned_cols=124  Identities=27%  Similarity=0.287  Sum_probs=104.7

Q ss_pred             HHHHHHhhcccc-cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcC
Q 031838           26 FKSLSKQQLLKS-LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG  104 (152)
Q Consensus        26 ~~~ll~~~~~~~-~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~  104 (152)
                      ++.|++++.... .+..+..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|
T Consensus         1 v~~ll~~~~~~~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~d~~g~tpLh~A~~~g~~~~v~~Ll~~g   77 (229)
T 2vge_A            1 MRSVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKEMND---PSQPNEEGITALHNAICGANYSIVDFLITAG   77 (229)
T ss_dssp             ---------CCCCCCCTTSCHHHHHHHHHHHTCHHHHHHHHHHSSC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred             CeehhccCCCCccccccccchhHHHHHHHHcCCHHHHHHHHhcCCC---CCCCCCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence            355666653222 334556678999999999999999999999887   6778899999999999999999999999999


Q ss_pred             CCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcc-ccccccCC
Q 031838          105 ADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD-KACNFLYQ  152 (152)
Q Consensus       105 ~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~-~~~~t~l~  152 (152)
                      ++++..|..|.||||+|+..|+.+++++|+++|++++..+ ..|.||||
T Consensus        78 a~~n~~d~~g~tpLh~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~tpL~  126 (229)
T 2vge_A           78 ANVNSPDSHGWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFE  126 (229)
T ss_dssp             CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHTTTCCTTCCCSSTTCCTGG
T ss_pred             CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCCHHH
Confidence            9999999999999999999999999999999999999987 69999996

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.93  E-value=1.4e-25  Score=140.13  Aligned_cols=111  Identities=24%  Similarity=0.382  Sum_probs=100.5

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC-CCCChhhH
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIH   86 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~t~l~   86 (152)
                      ..|.|+|+.|+..|+.+.++.|++ +  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++ ..|.||||
T Consensus        42 ~~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~~~~~g~tpL~  115 (183)
T 3deo_A           42 SEYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALH  115 (183)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHTT-T--SCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSSCCHHH
T ss_pred             CCCCCHHHHHHHcCCHHHHHHHHh-c--CCCCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCcCCCCCCCCHHH
Confidence            356799999999999999999998 5  67888899999999999999999999999998887   55666 78999999


Q ss_pred             HHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHc
Q 031838           87 SAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASK  124 (152)
Q Consensus        87 ~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~  124 (152)
                      +|+..++.+++++|++.|++++.+|..|.||+++|+..
T Consensus       116 ~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~~A~~~  153 (183)
T 3deo_A          116 MAAGYVRPEVVEALVELGADIEVEDERGLTALELAREI  153 (183)
T ss_dssp             HHHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHHHHHHh
Confidence            99999999999999999999999999999999999875

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.93  E-value=7.4e-26  Score=147.29  Aligned_cols=125  Identities=24%  Similarity=0.371  Sum_probs=113.3

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC-CCCChhhHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD-EEGWAPIHS   87 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~-~~~~t~l~~   87 (152)
                      .|.|+||.|+..|+.+.++.|++ +  .+++.++..|.||||+|+..|+.+++++|+..+.+   ++.++ ..|.||||+
T Consensus        44 ~g~t~L~~A~~~g~~~~v~~Ll~-~--~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~---~~~~~~~~g~t~L~~  117 (244)
T 3ui2_A           44 EYETPWWTAARKADEQALSQLLE-D--RDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGAD---LDHRDMRGGLTALHM  117 (244)
T ss_dssp             HHHHHHHHHHTTTCHHHHHHTTT-T--CCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCC---TTCCCSSSCCCHHHH
T ss_pred             CCCCHHHHHHHcCCHHHHHHHHc-C--CCCCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---CCcCCCCCCCCHHHH
Confidence            57899999999999999999999 5  67888999999999999999999999999999888   55666 789999999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH----------------HcCCHHHHHHHHhcCCC
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAA----------------SKGWLKIVELLISRGAK  139 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~----------------~~~~~~~~~~Ll~~g~~  139 (152)
                      |+..|+.+++++|++.|++++.++..|.||+++|+                ..|+.+++++|++++.+
T Consensus       118 A~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~~~~~~~~~~~l~~a~~~g~~~iv~~L~~~~~~  185 (244)
T 3ui2_A          118 AAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFE  185 (244)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHHHHHHHEE
T ss_pred             HHHcCCHHHHHHHHHCCCCCCCCCCCCCcHHHHHHHHHhccCCCCHHHHHHHcChHHHHHHHHHhccc
Confidence            99999999999999999999999999999998888                56778999999986543

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.93  E-value=5.3e-25  Score=123.22  Aligned_cols=93  Identities=49%  Similarity=0.757  Sum_probs=83.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 031838           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (152)
Q Consensus        44 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~  123 (152)
                      .|+||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.+|..|.||+++|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~g~~---~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             --CCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCCcHHHHHHHcCCHHHHHHHHHcCCC---CcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCccCCCCCCHHHHHHH
Confidence            378999999999999999999988877   67778899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCC
Q 031838          124 KGWLKIVELLISRGAK  139 (152)
Q Consensus       124 ~~~~~~~~~Ll~~g~~  139 (152)
                      .++.+++++|+++|++
T Consensus        78 ~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           78 NGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             TTCHHHHHHHHHTTCC
T ss_pred             cCCHHHHHHHHHcCCC
Confidence            9999999999999875

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.93  E-value=5.7e-26  Score=131.85  Aligned_cols=109  Identities=40%  Similarity=0.556  Sum_probs=97.7

Q ss_pred             cCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 031838           40 LRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALH  119 (152)
Q Consensus        40 ~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~  119 (152)
                      .+|..|.||||+|+..++.+++++|++.+.+   ++..+..|.||||+|+..++.+++++|++.|++++.++..|.|||+
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~d~~g~tpl~   80 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKGAD---VNARSKDGNTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEH   80 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTTCC---SSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCCTTCCCTTCCCTTH
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            5678899999999999999999999988777   6677888999999999999999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCccccccccC
Q 031838          120 YAASKGWLKIVELLISRGAKINSKDKACNFLY  151 (152)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l  151 (152)
                      +|+..++.+++++|+++|++++.++..|.||-
T Consensus        81 ~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           81 LAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             HHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            99999999999999999999999999999884

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=99.93  E-value=3.7e-25  Score=130.01  Aligned_cols=106  Identities=47%  Similarity=0.716  Sum_probs=100.8

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Q 031838           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS  123 (152)
Q Consensus        44 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~  123 (152)
                      +|.||||+|+..++.++++++++.+.+   ++..+..|.||||.|+..++.+++++|++.|++++.++..|.||+++|+.
T Consensus         1 ~g~t~L~~A~~~~~~~~v~~Ll~~~~~---~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~~A~~   77 (126)
T 1n0r_A            1 NGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAAR   77 (126)
T ss_dssp             CCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHH
T ss_pred             CCccHHHHHHHcCcHHHHHHHHHcCCC---CCCcCCCCCcHHHHHHHcCcHHHHHHHHHcCCCCcccCCCCCcHHHHHHH
Confidence            489999999999999999999998877   66778899999999999999999999999999999999999999999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          124 KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .++.+++++|+++|++++.++..|.||||
T Consensus        78 ~~~~~~~~~Ll~~g~~~~~~~~~g~t~l~  106 (126)
T 1n0r_A           78 NGHLEVVKLLLEAGADVNAKDKNGRTPLH  106 (126)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cChHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            99999999999999999999999999985

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=99.93  E-value=9.6e-26  Score=137.52  Aligned_cols=111  Identities=27%  Similarity=0.371  Sum_probs=100.6

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCc-
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT-  116 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~-  116 (152)
                      ....+..|.||||+|+..|+.+++++|++.+.+   ++..+..|.||||+|+ .++.+++++|++.|++++.++..|.| 
T Consensus         5 ~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~-~~~~~~v~~Ll~~g~~~~~~d~~g~tt   80 (156)
T 1bi7_B            5 AGSSMEPSADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTR   80 (156)
T ss_dssp             -----CCSTTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCC
T ss_pred             ccCCCccchHHHHHHHHcCCHHHHHHHHHcCCC---CCCCCCCCCCHHHHHH-cCCHHHHHHHHHcCCCCCCcCCCCCcH
Confidence            345567789999999999999999999998877   6777889999999985 89999999999999999999999999 


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          117 ALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       117 pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |||+|+..++.+++++|+++|++++.++..|.||||
T Consensus        81 pL~~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  116 (156)
T 1bi7_B           81 PVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVD  116 (156)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHcCCCCcccCCCCCCHHH
Confidence            999999999999999999999999999999999986

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=99.92  E-value=3.1e-25  Score=138.54  Aligned_cols=107  Identities=32%  Similarity=0.402  Sum_probs=100.5

Q ss_pred             CCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccC-CCCCcHHHH
Q 031838           42 NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHY  120 (152)
Q Consensus        42 ~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~pl~~  120 (152)
                      +..|.||||+|+..|+.++++.++. +.+   ++.++..|.||||+|+..++.+++++|++.|++++..+ ..|.||||+
T Consensus        41 ~~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~  116 (183)
T 3deo_A           41 VSEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHM  116 (183)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHTT-TSC---TTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSSCCHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHh-cCC---CCCcCCCCCCHHHHHHHcCCHHHHHHHHHcCCCCCcCCCCCCCCHHHH
Confidence            3468899999999999999999998 665   67788999999999999999999999999999999888 889999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          121 AASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       121 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+..++.+++++|+++|++++.++..|+||||
T Consensus       117 A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tpl~  148 (183)
T 3deo_A          117 AAGYVRPEVVEALVELGADIEVEDERGLTALE  148 (183)
T ss_dssp             HHHTTCHHHHHHHHHHTCCTTCCCTTSCCHHH
T ss_pred             HHhcCcHHHHHHHHHcCCCCcCCCCCCCCHHH
Confidence            99999999999999999999999999999985

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=99.92  E-value=1.6e-25  Score=143.64  Aligned_cols=109  Identities=31%  Similarity=0.430  Sum_probs=103.0

Q ss_pred             CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHH
Q 031838           41 RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALH  119 (152)
Q Consensus        41 ~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~  119 (152)
                      .+..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++. |++++.++..|.||||
T Consensus        69 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~  145 (222)
T 3ehr_A           69 QAESIDNPLHEAAKRGNLSWLRECLDNRVG---VNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALH  145 (222)
T ss_dssp             HEEEESCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHTTSTTCCCCCCCTTSCCHHH
T ss_pred             cccccccccccccccCcHHHHHHHHhCCCC---ccccCCCCCCHHHHHHHcCCHHHHHHHHcCCCCCccccCCCCCCHHH
Confidence            455688999999999999999999998877   677788999999999999999999999998 9999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          120 YAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +|+..|+.+++++|+++|++++.++..|.||||
T Consensus       146 ~A~~~~~~~~v~~Ll~~ga~~~~~~~~g~t~l~  178 (222)
T 3ehr_A          146 AAAWKGYADIVQLLLAKGARTDLRNIEKKLAFD  178 (222)
T ss_dssp             HHHHHTCHHHHHHHHHHTCCSCCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCccccCCCCCHHH
Confidence            999999999999999999999999999999985

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=99.92  E-value=8.4e-25  Score=142.31  Aligned_cols=106  Identities=32%  Similarity=0.413  Sum_probs=99.9

Q ss_pred             CCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHH
Q 031838           43 DDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYA  121 (152)
Q Consensus        43 ~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~pl~~a  121 (152)
                      ..|.||||+|+..|+.++++.|+. +.+   ++.++..|.||||+|+..|+.+++++|++.|++++..+ ..|.||||+|
T Consensus        43 ~~g~t~L~~A~~~g~~~~v~~Ll~-~~~---~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A  118 (244)
T 3ui2_A           43 SEYETPWWTAARKADEQALSQLLE-DRD---VDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMA  118 (244)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHTTT-TCC---TTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHc-CCC---CCCcCCCCCCHHHHHHHCCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHH
Confidence            458899999999999999999998 665   67788999999999999999999999999999999888 7899999999


Q ss_pred             HHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          122 ASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       122 ~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +..++.+++++|+++|++++.++..|.||||
T Consensus       119 ~~~g~~~~v~~Ll~~ga~~~~~d~~g~t~l~  149 (244)
T 3ui2_A          119 AGYVRPEVVEALVELGADIEVEDERGLTALE  149 (244)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             HHcCCHHHHHHHHHCCCCCCCCCCCCCcHHH
Confidence            9999999999999999999999999999986

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=99.90  E-value=8.5e-25  Score=147.77  Aligned_cols=119  Identities=18%  Similarity=0.119  Sum_probs=101.5

Q ss_pred             HHHHHHHhCCHHHHHHHHHhhccccccc-CCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           13 DLFKAAETGDSSTFKSLSKQQLLKSLSL-RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        13 ~l~~a~~~~~~~~~~~ll~~~~~~~~~~-~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      ..+.|+..+..+.++.|++.+  .+++. ++..|.||||+|+..|+.+++++|++.+.+   ++.++..|.||||+|+..
T Consensus       100 ~~~~a~~~~~~~~~~~l~~~g--~dvn~~~d~~g~TpLh~Aa~~g~~~~v~~Ll~~Gad---~n~~d~~g~TpLh~A~~~  174 (327)
T 1sw6_A          100 QQHVSFDSLLQEVNDAFPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSN---RLYGDNMGESCLVKAVKS  174 (327)
T ss_dssp             ----CHHHHHHHHHHHCTTSC--CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTBCCTTCCCHHHHHHHS
T ss_pred             hhHHHHHhhHHHHHHHHHhcC--CCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC---CCCcCCCCCCHHHHHHHh
Confidence            346667666677777777765  67888 899999999999999999999999999988   678889999999999999


Q ss_pred             CC---HHHHHHHHHcC-CCCcccCCCCCcHHHHHHH----cCCHHHHHHHHhc
Q 031838           92 GN---VTIVEMLLSKG-ADVNLKNDGGRTALHYAAS----KGWLKIVELLISR  136 (152)
Q Consensus        92 ~~---~~~~~~l~~~~-~~~~~~~~~~~~pl~~a~~----~~~~~~~~~Ll~~  136 (152)
                      |+   .++++.|++.+ .+++.++..|.||||+|+.    .++.+++++|++.
T Consensus       175 g~~~~~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~~~~~~g~~~~v~~Ll~~  227 (327)
T 1sw6_A          175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDI  227 (327)
T ss_dssp             SHHHHTTCHHHHHHHHGGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             cccccHHHHHHHHHhhhccccCCCCCCCCHHHHHHHHccccccHHHHHHHHHH
Confidence            98   67777788774 7799999999999999999    8999999999987

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=99.90  E-value=8.5e-23  Score=114.18  Aligned_cols=92  Identities=37%  Similarity=0.532  Sum_probs=85.4

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHH
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAA   89 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~   89 (152)
                      |.||||.|+..|+.+++++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.||||+|+
T Consensus         2 g~t~L~~A~~~~~~~~v~~Ll~~g--~~~n~~d~~g~t~L~~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~t~l~~A~   76 (93)
T 1n0q_A            2 GRTPLHLAARNGHLEVVKLLLEAG--ADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGAD---VNAKDKNGRTPLHLAA   76 (93)
T ss_dssp             -CCHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHH
T ss_pred             CCcHHHHHHHcCCHHHHHHHHHcC--CCCcccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHH
Confidence            789999999999999999999987  67889999999999999999999999999999888   6777889999999999


Q ss_pred             hcCCHHHHHHHHHcCCC
Q 031838           90 SIGNVTIVEMLLSKGAD  106 (152)
Q Consensus        90 ~~~~~~~~~~l~~~~~~  106 (152)
                      ..++.+++++|++.|++
T Consensus        77 ~~~~~~~~~~Ll~~ga~   93 (93)
T 1n0q_A           77 RNGHLEVVKLLLEAGAY   93 (93)
T ss_dssp             HTTCHHHHHHHHHTTCC
T ss_pred             HcCCHHHHHHHHHcCCC
Confidence            99999999999998863

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=99.90  E-value=1.8e-23  Score=121.21  Aligned_cols=109  Identities=34%  Similarity=0.461  Sum_probs=99.1

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChh
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAP   84 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~   84 (152)
                      .++..|.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|++.+.+   ++.++..|.||
T Consensus         4 ~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g--~~~~~~d~~g~t~L~~A~~~~~~~~~~~Ll~~g~~---~~~~d~~g~tp   78 (115)
T 2l6b_A            4 WGSKDGNTPLHNAAKNGHAEEVKKLLSKG--ADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGAD---VNARSKDGNTP   78 (115)
T ss_dssp             CCSCSSCCHHHHHHHHTCHHHHHHHTTTT--CCSSCCCSSSCCTTHHHHTTTCHHHHHHHTTTTCC---TTCCCTTCCCT
T ss_pred             ccCCCCCCHHHHHHHcCCHHHHHHHHHcC--CCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHcCCC---CcccCCCCCCH
Confidence            56788999999999999999999999987  67888899999999999999999999999998877   67778899999


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHH
Q 031838           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTAL  118 (152)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl  118 (152)
                      ||+|+..++.+++++|++.|++++..+..+.+|-
T Consensus        79 l~~A~~~~~~~~~~~Ll~~ga~~n~~~~~~~~~~  112 (115)
T 2l6b_A           79 EHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHH  112 (115)
T ss_dssp             THHHHTTTCHHHHHHHHTTSSSHHHHSCCCC---
T ss_pred             HHHHHHCCCHHHHHHHHHcCCCCCcCCccccccc
Confidence            9999999999999999999999999999888874

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.89  E-value=2.3e-25  Score=152.74  Aligned_cols=129  Identities=19%  Similarity=0.221  Sum_probs=104.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhccc-ccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLK-SLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHS   87 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~-~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~   87 (152)
                      .+.|+||.|++.|+.+++++|++.+... .....+..|.||||+|+..|+.+++++|++.+++....+..+.. .||||.
T Consensus        91 ~~~T~Lh~Aa~~G~~e~v~~Ll~~ga~~~~~~~~~~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~~-~TpLh~  169 (376)
T 2aja_A           91 KSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAEN-YHAFRL  169 (376)
T ss_dssp             CHHHHHHHHHHHCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHH-HHHHHH
T ss_pred             CcCCHHHHHHHcCCHHHHHHHHHcCCcHHHHHHhccCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCCC-CCHHHH
Confidence            3469999999999999999999987311 12234456789999999999999999999988642211222222 899999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcc--cCCCCCcHHHHHH-HcCCHHHHHHHHhcCC
Q 031838           88 AASIGNVTIVEMLLSKGADVNL--KNDGGRTALHYAA-SKGWLKIVELLISRGA  138 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~--~~~~~~~pl~~a~-~~~~~~~~~~Ll~~g~  138 (152)
                      |+..|+.+++++|++.|++++.  .+..|.||||+|+ ..|+.+++++|++.|+
T Consensus       170 Aa~~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~G~~eiv~~Ll~~ga  223 (376)
T 2aja_A          170 AAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPV  223 (376)
T ss_dssp             HHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHH
T ss_pred             HHHCCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHCCCHHHHHHHHhCCC
Confidence            9999999999999999999876  7788999999999 9999999999999774

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=99.88  E-value=9.9e-22  Score=131.39  Aligned_cols=105  Identities=19%  Similarity=0.247  Sum_probs=97.3

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccc------cCCCCChhhHHHHhc---CCHHHHHHHHHcCCCCcccCCCCC
Q 031838           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNA------VDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGR  115 (152)
Q Consensus        45 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~------~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~  115 (152)
                      ..++|+.|+..++.+.++.++..+.+   ++.      .+..|.||||+|+..   ++.+++++|++.|++++.+|..|.
T Consensus       151 ~~~~L~~A~~~g~~~~v~~ll~~g~d---~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadvn~~d~~G~  227 (301)
T 2b0o_E          151 EPQRLWTAICNRDLLSVLEAFANGQD---FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGN  227 (301)
T ss_dssp             CHHHHHHHHHTTCHHHHHHHHHTTCC---TTSCEECSSSCSCEECHHHHHHHTCCTTTHHHHHHHHHHSSCTTCCCTTCC
T ss_pred             hHHHHhhhhhccCHHHHHHHHhcCCc---ccccCCCcccCCCCccHHHHHHHhcccCcHHHHHHHHhcCCCCCCCCCCCC
Confidence            45779999999999999999988877   333      577899999999987   899999999999999999999999


Q ss_pred             cHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          116 TALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       116 ~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||||+|+..++.+++++|+++|++++.+|..|.||||
T Consensus       228 TpLh~A~~~g~~~~v~~Ll~~gad~~~~d~~G~TpL~  264 (301)
T 2b0o_E          228 TALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  264 (301)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHTTCCCSCCCTTSCCHHH
T ss_pred             CHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            9999999999999999999999999999999999985

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=99.87  E-value=3.3e-22  Score=136.75  Aligned_cols=109  Identities=25%  Similarity=0.320  Sum_probs=100.1

Q ss_pred             CCCCCchHHHHHHHc-CCHHHHHHHHhcCCCCccccccC--CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 031838           41 RNDDDRTLLHVAASC-GHPEVVEILLSVDESANVVNAVD--EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (152)
Q Consensus        41 ~~~~g~t~l~~a~~~-~~~~~~~~ll~~~~~~~~~~~~~--~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~p  117 (152)
                      ....+.++||.|+.. ++.++++.|+..+.+   ++..+  ..|.||||+|+..++.+++++|++.|++++..|..|.||
T Consensus       195 ~~~~~~t~L~~Aa~~~g~~~~v~~LL~~Gad---vn~~~~~~~g~TpLh~Aa~~g~~~iv~~LL~~Gadvn~~d~~G~Tp  271 (368)
T 3jue_A          195 GSLHPGALLFRASGHPPSLPTMADALAHGAD---VNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQADSAGRGP  271 (368)
T ss_dssp             --CCHHHHHHHHTSSSCCHHHHHHHHHTTCC---TTCCCTTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccCCCCcHHHHHHHccCCHHHHHHHHHcCCC---CCccccccCCCCHHHHHHHCCCHHHHHHHHHcCCCCCCCCCCCCCH
Confidence            334456899999999 999999999999888   55555  789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          118 LHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ||+|+..++.+++++|+++|++++..|..|.||||
T Consensus       272 Lh~A~~~g~~~~v~~LL~~Gad~~~~d~~G~TpL~  306 (368)
T 3jue_A          272 LHHATILGHTGLACLFLKRGADLGARDSEGRDPLT  306 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHHHcCcHHHHHHHHHCcCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999986

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=99.87  E-value=1.3e-21  Score=138.74  Aligned_cols=106  Identities=19%  Similarity=0.220  Sum_probs=97.6

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCcccccc------CCCCChhhHHHHh---cCCHHHHHHHHHcCCCCcccCCCC
Q 031838           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAV------DEEGWAPIHSAAS---IGNVTIVEMLLSKGADVNLKNDGG  114 (152)
Q Consensus        44 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~------~~~~~t~l~~a~~---~~~~~~~~~l~~~~~~~~~~~~~~  114 (152)
                      ...+.|+.|+..|+.+.++.++..+.+   ++..      +..|.||||+|+.   .|+.+++++|++.|++++.+|..|
T Consensus       131 ~~~~~L~~A~~~g~~~~v~~ll~~g~~---~n~~~~~~~~~~~g~t~Lh~A~~~a~~g~~~~v~~Ll~~ga~vn~~d~~g  207 (497)
T 3lvq_E          131 PEPQRLWTAICNRDLLSVLEAFANGQD---FGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADG  207 (497)
T ss_dssp             -CHHHHHHHHHHTCHHHHHHHHHTTCC---SSSCBCCSSSCCSCBCHHHHHHHTCCTTTHHHHHHHHHHSCCTTCCCSSS
T ss_pred             ccHHHHHHHHhccCHHHHHHHHhhccc---ccCCCCCcccccccchHHHHHHHhcccccHHHHHHHHHcCCCCCccCCCC
Confidence            345789999999999999999999887   4433      6789999999966   899999999999999999999999


Q ss_pred             CcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          115 RTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       115 ~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       208 ~TpLh~A~~~g~~~~v~~Ll~~ga~~~~~d~~g~tpl~  245 (497)
T 3lvq_E          208 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD  245 (497)
T ss_dssp             CCHHHHHTTTTCHHHHHHHHHTCCCCSCCCTTCCCHHH
T ss_pred             CcHHHHHHHcCCHHHHHHHHHcCCCCCCcCCCCCCHHH
Confidence            99999999999999999999999999999999999986

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=99.86  E-value=3.9e-21  Score=127.24  Aligned_cols=107  Identities=17%  Similarity=0.155  Sum_probs=97.4

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCcc---ccccCCCCChhhHHHHhc---CCHHHHHHHHHcCCCCcccCCCCCcHHH
Q 031838           46 RTLLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALH  119 (152)
Q Consensus        46 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~pl~  119 (152)
                      .++|+.|+..++.+.+..++..+.+...   ++..+..|.||||+|+..   ++.+++++|++.|++++.+|..|.||||
T Consensus       131 l~~l~~a~~~~d~~~~~~ll~~g~~~~~~~~l~~~~~~g~t~Lh~A~~~~~~~~~~~v~~Ll~~ga~in~~d~~g~TpLh  210 (278)
T 1dcq_A          131 LHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALH  210 (278)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHH
T ss_pred             hhhhhhHhhhcccHHHHHHHHhhcchhhhccccccccCCCCcchHHHHhcccchHHHHHHHHHCCCCccccCCCCCCHHH
Confidence            4689999999999999999988776321   334477899999999999   8999999999999999999999999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          120 YAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       120 ~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       211 ~A~~~g~~~~v~~Ll~~gad~~~~d~~g~tpL~  243 (278)
T 1dcq_A          211 YCCLTDNAECLKLLLRGKASIEIANESGETPLD  243 (278)
T ss_dssp             HHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCCCCCCccCCCCCHHH
Confidence            999999999999999999999999999999986

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.85  E-value=9.1e-21  Score=109.06  Aligned_cols=93  Identities=33%  Similarity=0.448  Sum_probs=80.9

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~p  117 (152)
                      ....+..|.|+||+|+..++.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.++..|.||
T Consensus        17 ~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~---i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~~~~~d~~g~tp   93 (110)
T 2zgd_A           17 GSHMGSDLGKKLLEAARAGQDDEVRILMANGAD---VAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTA   93 (110)
T ss_dssp             -----CCHHHHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             ccccCCccchHHHHHHHcCCHHHHHHHHHcCCC---CCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCCccccccCCCcH
Confidence            344567789999999999999999999988777   67778899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHH
Q 031838          118 LHYAASKGWLKIVELL  133 (152)
Q Consensus       118 l~~a~~~~~~~~~~~L  133 (152)
                      +++|+..++.+++++|
T Consensus        94 l~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           94 FDISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHHTCHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHh
Confidence            9999999999999876

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=99.84  E-value=1.6e-23  Score=143.65  Aligned_cols=125  Identities=15%  Similarity=0.139  Sum_probs=105.2

Q ss_pred             CCCChHHHHHHHhCCHHHHHHHHHhhcc---cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccc--cCCCCC
Q 031838            8 TIKDKDLFKAAETGDSSTFKSLSKQQLL---KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNA--VDEEGW   82 (152)
Q Consensus         8 ~~~~~~l~~a~~~~~~~~~~~ll~~~~~---~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~--~~~~~~   82 (152)
                      ..+.+||+.|+..|+.++|++|++.+.+   .+++.+  . .||||+|+..|+.+++++|++.+++   .+.  .+..|.
T Consensus       126 ~~~~tpL~~Aa~~G~~eiv~~Ll~~gad~~~~~i~~~--~-~TpLh~Aa~~G~~eiv~~Ll~~ga~---~~~~~~d~~g~  199 (376)
T 2aja_A          126 AENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAE--N-YHAFRLAAENGHLHVLNRLCELAPT---EATAMIQAENY  199 (376)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHH--H-HHHHHHHHHTTCHHHHHHHHHSCGG---GHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHcCCHHHHHHHHhCCCCccccccCCC--C-CCHHHHHHHCCCHHHHHHHHHcCCc---cchhccCCCCC
Confidence            3467899999999999999999998732   123333  3 8999999999999999999999877   343  567789


Q ss_pred             hhhHHHH-hcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccc
Q 031838           83 APIHSAA-SIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK  145 (152)
Q Consensus        83 t~l~~a~-~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (152)
                      ||||+|+ ..|+.+++++|++.|.       .+.||+++|+..|+.+++++|+++|++++..+.
T Consensus       200 TpL~~Aa~~~G~~eiv~~Ll~~ga-------~~~taL~~Aa~~g~~evv~lL~~~ga~~~~~~~  256 (376)
T 2aja_A          200 YAFRWAAVGRGHHNVINFLLDCPV-------MLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD  256 (376)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHH-------HHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHCCCHHHHHHHHhCCC-------ccchHHHHHHHCCCHHHHHHHHhcCcccccccH
Confidence            9999999 9999999999998653       278999999999999999999999987755443

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=99.82  E-value=1.7e-19  Score=103.72  Aligned_cols=90  Identities=29%  Similarity=0.396  Sum_probs=81.6

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..+.++|+.|+..|+.+.+++|++.+  .+++.++..|.||||+|+..++.+++++|+..+.+   ++.++..|.|||
T Consensus        20 ~~~~g~t~L~~A~~~g~~~~v~~Ll~~g--~~i~~~d~~g~tpLh~A~~~~~~~~v~~Ll~~ga~---~~~~d~~g~tpl   94 (110)
T 2zgd_A           20 MGSDLGKKLLEAARAGQDDEVRILMANG--ADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGAD---VXAQDKFGKTAF   94 (110)
T ss_dssp             --CCHHHHHHHHHHHTCHHHHHHHHHTT--CCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTSCCHH
T ss_pred             cCCccchHHHHHHHcCCHHHHHHHHHcC--CCCCccCCCCCCHHHHHHHcCCHHHHHHHHHcCCC---ccccccCCCcHH
Confidence            3456889999999999999999999986  67888899999999999999999999999999877   677788999999


Q ss_pred             HHHHhcCCHHHHHHH
Q 031838           86 HSAASIGNVTIVEML  100 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l  100 (152)
                      |+|+..++.+++++|
T Consensus        95 ~~A~~~~~~~~~~~L  109 (110)
T 2zgd_A           95 DISIDNGNEDLAEIL  109 (110)
T ss_dssp             HHHHHHTCHHHHHHH
T ss_pred             HHHHHcCCHHHHHHh
Confidence            999999999999876

>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A

Probab=84.36  E-value=1.6  Score=19.25  Aligned_cols=21  Identities=33%  Similarity=0.528  Sum_probs=16.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHh
Q 031838           12 KDLFKAAETGDSSTFKSLSKQ   32 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~   32 (152)
                      ..++.|+..|+.+.++.|-.+
T Consensus        15 QqiyvA~seGd~etv~~Le~Q   35 (40)
T 1gp8_A           15 KQMDAAASKGDVETYRKLKAK   35 (40)
T ss_dssp             HHHHHHHTTSCHHHHHHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHH
Confidence            467889999999999877543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	152
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-25
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-12
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-11
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	3e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	7e-10
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	2e-05
d1wdya_	285	d.211.1.1 (A:) RNase L, 2-5a-dependent ribonucleas	1e-04
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-25
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	9e-21
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-16
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-15
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	2e-13
d1n11a_	408	d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [Ta	3e-05
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	6e-22
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-17
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-13
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-09
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	4e-07
d2ajaa1	346	a.118.24.1 (A:3-348) Hypothetical protein LPG2416	2e-05
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	3e-20
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	2e-16
d1sw6a_	301	d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker	1e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-20
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	7e-13
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	4e-12
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	5e-08
d2fo1e1	277	d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis ele	9e-05
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	2e-19
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-16
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-11
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	6e-08
d1s70b_	291	d.211.1.1 (B:) Myosin phosphatase targeting subuni	3e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-17
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-16
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	1e-14
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-10
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	5e-07
d1oy3d_	255	d.211.1.1 (D:) Transcription factor inhibitor I-ka	2e-04
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	9e-17
d1uoha_	223	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-15
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	2e-11
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	8e-10
d1k1aa_	228	d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId:	5e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	3e-15
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-11
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	5e-09
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-08
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	1e-05
d1ixva_	229	d.211.1.1 (A:) 26S proteasome non-ATPase regulator	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-14
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	8e-11
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	1e-08
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	2e-05
d1ot8a_	209	d.211.1.1 (A:) Neurogenic locus notch receptor dom	3e-04
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-14
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	5e-09
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	4e-06
d1iknd_	221	d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapien	1e-04
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	6e-14
d1ycsb1	130	d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens)	4e-04
d1dcqa1	154	d.211.1.1 (A:369-522) Pyk2-associated protein beta	1e-12
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-10
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	5e-05
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	2e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	3e-04
d1awcb_	153	d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {	6e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	1e-09
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	5e-05
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	3e-04
d1bd8a_	156	d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Huma	0.001
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	8e-09
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-05
d1bi7b_	125	d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Huma	3e-04
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	4e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	6e-08
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	9e-07
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	3e-05
d1ihba_	156	d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens	2e-04
d1myoa_	118	d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus)	6e-05

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (236), Expect = 3e-25
 Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 38/140 (27%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANV---------------------------- 73
                T L  AA  GH EV++ILL  +  A+V                            
Sbjct: 145 RKGGATALMDAAEKGHVEVLKILLD-EMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203

Query: 74  --------VNAVDEEGWAPIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASK 124
                   VN   E G  P+  A    ++ +V+ LL +   ++N  +  G+TAL  A   
Sbjct: 204 LLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVEL 263

Query: 125 GWLKIVELLISRGAKINSKD 144
              KI ELL  RGA  +  D
Sbjct: 264 KLKKIAELLCKRGASTDCGD 283

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.7 bits (146), Expect = 2e-12
 Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLI 134
           E    +  A    +V +V+ LL  GA+VN +  +GG T LH A       IVELL+
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLL 59

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 2e-11
 Identities = 41/181 (22%), Positives = 68/181 (37%), Gaps = 44/181 (24%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDD-RTLLHVAASCGHPEVVEILLSV----- 67
           L KA +  D    + L +     +++ + ++   T LH A      ++VE+LL       
Sbjct: 9   LIKAVQNEDVDLVQQLLEGGA--NVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPV 66

Query: 68  -------------------------DESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLS 102
                                          VN  D  G+     AA  G V  ++ L  
Sbjct: 67  LRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYK 126

Query: 103 KGADVNLKN----------DGGRTALHYAASKGWLKIVELLISR-GAKINSKDKACNFLY 151
           +GA+VNL+            GG TAL  AA KG ++++++L+   GA +N+ D       
Sbjct: 127 RGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNAL 186

Query: 152 Q 152
            
Sbjct: 187 I 187

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.0 bits (131), Expect = 3e-10
 Identities = 37/101 (36%), Positives = 55/101 (54%), Gaps = 2/101 (1%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
           +D  LL  A      ++V+ LL  +  ANV    +E GW P+H+A  +    IVE+LL  
Sbjct: 4   EDNHLLIKAVQNEDVDLVQQLL--EGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH 61

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           GAD  L+   G T    AA  G +K+++L +S+GA +N  D
Sbjct: 62  GADPVLRKKNGATPFLLAAIAGSVKLLKLFLSKGADVNECD 102

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.4 bits (127), Expect = 7e-10
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 12/116 (10%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLS-------VDESANVVNAVDEEGWAPIHSAASIGNV 94
           +    T    AA  G  + ++ L           ++      + + G   +  AA  G+V
Sbjct: 102 DFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHV 161

Query: 95  TIVEMLLSK-GADVNLKNDGGR----TALHYAASKGWLKIVELLISRGAKINSKDK 145
            ++++LL + GADVN  ++ GR     AL  +       I  LL+  GA +N + +
Sbjct: 162 EVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGE 217

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 7/32 (21%), Positives = 15/32 (46%)

Query: 114 GRTALHYAASKGWLKIVELLISRGAKINSKDK 145
               L  A     + +V+ L+  GA +N +++
Sbjct: 5   DNHLLIKAVQNEDVDLVQQLLEGGANVNFQEE 36

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]} Length = 285

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 1e-04
 Identities = 15/82 (18%), Positives = 33/82 (40%), Gaps = 8/82 (9%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +D   D  ++ +     L  A E       + L +Q+ +  ++  + D +T L +A    
Sbjct: 206 LDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHI-EINDTDSDGKTALLLAVELK 264

Query: 57  HPEVVEILLSVDESANVVNAVD 78
             ++ E+L      A+  +  D
Sbjct: 265 LKKIAELLCKRG--AS-TDCGD 283

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 97.4 bits (241), Expect = 3e-25
 Identities = 35/106 (33%), Positives = 50/106 (47%), Gaps = 3/106 (2%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD 106
           T LHVA+  GH  +V+ LL     A+  N  + +   P+H AA  G+  + + LL   A 
Sbjct: 2   TPLHVASFMGHLPIVKNLLQ--RGASP-NVSNVKVETPLHMAARAGHTEVAKYLLQNKAK 58

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
           VN K    +T LH AA  G   +V+LL+   A  N    A +    
Sbjct: 59  VNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLH 104

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 3e-21
 Identities = 39/165 (23%), Positives = 63/165 (38%), Gaps = 35/165 (21%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  AA+ G +     L  +Q   + +L N    T LH+ A  GH  V ++L+      + 
Sbjct: 235 LHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA 292

Query: 74  V------------------------------NAVDEEGWAPIHSAASIGNVTIVEMLLSK 103
                                          NA  + G++P+H AA  G+  IV +LL  
Sbjct: 293 TTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN 352

Query: 104 GADVNLKNDGGRTALHYAASKGWLKIVELL---ISRGAKINSKDK 145
           GA  N  +  G T L  A   G++ + ++L       + +   DK
Sbjct: 353 GASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDK 397

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 86.2 bits (212), Expect = 3e-21
 Identities = 44/174 (25%), Positives = 68/174 (39%), Gaps = 36/174 (20%)

Query: 6   DQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
              + +      L  AA  G +   K L + +    ++ +  DD+T LH AA  GH  +V
Sbjct: 25  SPNVSNVKVETPLHMAARAGHTEVAKYLLQNKA--KVNAKAKDDQTPLHCAARIGHTNMV 82

Query: 62  EILLS------------------------------VDESANVVNAVDEEGWAPIHSAASI 91
           ++LL                               + E       + ++G+ P+H AA  
Sbjct: 83  KLLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKY 142

Query: 92  GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           G V + E+LL + A  N     G T LH A     L IV+LL+ RG   +S   
Sbjct: 143 GKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW 196

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 84.6 bits (208), Expect = 9e-21
 Identities = 46/165 (27%), Positives = 66/165 (40%), Gaps = 38/165 (23%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
           L  A+  G     K+L ++    S ++ N    T LH+AA  GH EV + LL     A V
Sbjct: 4   LHVASFMGHLPIVKNLLQRGA--SPNVSNVKVETPLHMAARAGHTEVAKYLL--QNKAKV 59

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSK------------------------------ 103
            NA  ++   P+H AA IG+  +V++LL                                
Sbjct: 60  -NAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLAL 118

Query: 104 ---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
               A        G T LH AA  G +++ ELL+ R A  N+  K
Sbjct: 119 LEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGK 163

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.1 bits (178), Expect = 2e-16
 Identities = 33/105 (31%), Positives = 48/105 (45%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA  G   V E+LL  D      NA  + G  P+H A    N+ IV++L
Sbjct: 128 MTKKGFTPLHVAAKYGKVRVAELLLERDAH---PNAAGKNGLTPLHVAVHHNNLDIVKLL 184

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L +G   +     G T LH AA +  +++   L+  G   N++  
Sbjct: 185 LPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGGSANAESV 229

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 70.0 bits (170), Expect = 2e-15
 Identities = 42/152 (27%), Positives = 64/152 (42%), Gaps = 9/152 (5%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           ++ D       K+    L  A    +    K L  +    S      +  T LH+AA   
Sbjct: 152 LERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRG--GSPHSPAWNGYTPLHIAAKQN 209

Query: 57  HPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRT 116
             EV   LL         NA   +G  P+H AA  G+  +V +LLSK A+ NL N  G T
Sbjct: 210 QVEVARSLLQYG---GSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLT 266

Query: 117 ALHYAASKGWLKIVELLISRGAKINSKDKACN 148
            LH  A +G + + ++LI  G  +++  +   
Sbjct: 267 PLHLVAQEGHVPVADVLIKHGVMVDATTRMGY 298

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.2 bits (155), Expect = 2e-13
 Identities = 32/137 (23%), Positives = 48/137 (35%), Gaps = 36/137 (26%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +    T LH+AA  GH E+V +   +       N  ++ G  P+H  A  G+V + ++L+
Sbjct: 228 SVQGVTPLHLAAQEGHAEMVAL---LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI 284

Query: 102 SKGADVNLKNDGGRTALHYAASKGW---------------------------------LK 128
             G  V+     G T LH A+  G                                    
Sbjct: 285 KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTD 344

Query: 129 IVELLISRGAKINSKDK 145
           IV LL+  GA  N    
Sbjct: 345 IVTLLLKNGASPNEVSS 361

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]} Length = 408

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 3e-05
 Identities = 20/85 (23%), Positives = 33/85 (38%), Gaps = 6/85 (7%)

Query: 1   MDMDIDQTIKDKD----LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG 56
           +    D   K K     L +AA+ G +     L K     S +  + D  T L +A   G
Sbjct: 317 LQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGA--SPNEVSSDGTTPLAIAKRLG 374

Query: 57  HPEVVEILLSVDESANVVNAVDEEG 81
           +  V ++L  V +  + V   D+  
Sbjct: 375 YISVTDVLKVVTDETSFVLVSDKHR 399

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 87.6 bits (216), Expect = 6e-22
 Identities = 20/117 (17%), Positives = 37/117 (31%), Gaps = 2/117 (1%)

Query: 31  KQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS 90
            +QL      +      +  VAA  G    ++ L  +  S  +V  +  E +     AA 
Sbjct: 76  AKQLWSDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAE 135

Query: 91  IGNVTIVEMLLSKGADVNLKN--DGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
            G++ ++  L        +         A   AA  G L ++  L        +   
Sbjct: 136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMI 192

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 74.5 bits (182), Expect = 4e-17
 Identities = 17/124 (13%), Positives = 34/124 (27%), Gaps = 11/124 (8%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------VNAVDEEGWAPIHS 87
            SL   +  +   + +  +    +V ++L       N          +    +       
Sbjct: 37  LSLMTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFV 96

Query: 88  AASIGNVTIVEM---LLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKD 144
           AA  G  + ++    LL+    V +       A   AA  G L ++  L           
Sbjct: 97  AAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAM 156

Query: 145 KACN 148
               
Sbjct: 157 IQAE 160

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 63.8 bits (154), Expect = 2e-13
 Identities = 13/100 (13%), Positives = 22/100 (22%), Gaps = 14/100 (14%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           R  +      ++   G  ++V                       +        +  +  L
Sbjct: 248 RLKEMHDAFKLSNPDGVFDLVT---------KSECLQGFYMLRNLIRRNDEVLLDDIRFL 298

Query: 101 LSKGADVNLKNDG-----GRTALHYAASKGWLKIVELLIS 135
           LS      L             L  A   G      LL+S
Sbjct: 299 LSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLS 338

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 52.6 bits (125), Expect = 2e-09
 Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 7/134 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV 73
              AAE G       L +    + +++   ++     +AA  GH  V+  L  +  +   
Sbjct: 130 FRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEAT 189

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
                E  +A   +A   G+  ++  LL     +         A  +    G   +   +
Sbjct: 190 AMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLA-------YAEIHEFEYGEKYVNPFI 242

Query: 134 ISRGAKINSKDKAC 147
                ++     A 
Sbjct: 243 ARHVNRLKEMHDAF 256

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 45.7 bits (107), Expect = 4e-07
 Identities = 12/113 (10%), Positives = 20/113 (17%), Gaps = 13/113 (11%)

Query: 36  KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT 95
             L                 G   V   +              +E       +   G   
Sbjct: 214 NFLLDCPVMLAYAEIHEFEYGEKYVNPFIA-------RHVNRLKEMHDAFKLSNPDGVFD 266

Query: 96  IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN 148
           +V           L+       L     +  L  +  L+S          A  
Sbjct: 267 LVT------KSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATI 313

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]} Length = 346

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

 Score = 40.6 bits (94), Expect = 2e-05
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 3/59 (5%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRND---DDRTLLHVAASCGHPEVVEILLSVDE 69
           L +  +       + L     +K+L+       D   LL +A   G+     +LLS+  
Sbjct: 283 LIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACALLLSIPS 341

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 82.4 bits (202), Expect = 3e-20
 Identities = 22/85 (25%), Positives = 40/85 (47%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           +    ++  +  +         ++E L      AN++NA D  G   ++ AA +GN++IV
Sbjct: 216 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 275

Query: 98  EMLLSKGADVNLKNDGGRTALHYAA 122
           + LL  GAD  + N  G   + + A
Sbjct: 276 DALLDYGADPFIANKSGLRPVDFGA 300

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.0 bits (175), Expect = 2e-16
 Identities = 26/125 (20%), Positives = 46/125 (36%), Gaps = 13/125 (10%)

Query: 34  LLKSLSLRNDDDRTLLHVAASCGHPEV----------VEILLSVDESANVVNAVDEEGWA 83
           L   L L +  +RT+LH                    + +   V +    + +   E  +
Sbjct: 166 LYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKES 225

Query: 84  PIHSAASIGNVTIVEMLLSK---GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI 140
             +        +I+E L  K      +N ++  G T L+ AA  G + IV+ L+  GA  
Sbjct: 226 KPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADP 285

Query: 141 NSKDK 145
              +K
Sbjct: 286 FIANK 290

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 61.2 bits (147), Expect = 1e-12
 Identities = 27/149 (18%), Positives = 51/149 (34%), Gaps = 6/149 (4%)

Query: 4   DIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEI 63
           D +Q +K +   +     +     +          S     ++   HV+      EV + 
Sbjct: 32  DNEQKMKLEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDA 91

Query: 64  LLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAAS 123
             +     N+   VDE G  P+H   SI N+ +V+ L+  G++    ++ G + L  A  
Sbjct: 92  FPNTQ--LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVK 149

Query: 124 KGWLK----IVELLISRGAKINSKDKACN 148
                       LL      +  +D    
Sbjct: 150 SVNNYDSGTFEALLDYLYPCLILEDSMNR 178

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 27/94 (28%), Positives = 41/94 (43%), Gaps = 2/94 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                RT LH AA   +  +V+    V E  +  +  DE+G  PI  AA  G + +V  L
Sbjct: 183 EKYKGRTALHYAAQVSNMPIVKY--LVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYL 240

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
           + +GA V   +    TA   A +     IV++  
Sbjct: 241 IQQGASVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 62.1 bits (149), Expect = 7e-13
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 80  EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL------ 133
           E    +H+ A+ G+  I E +  +  ++       RT LH+ AS    +  E L      
Sbjct: 1   ESPIKLHTEAA-GSYAITEPITRESVNIIDPRHN-RTVLHWIASNSSAEKSEDLIVHEAK 58

Query: 134 --ISRGAKINSKDK 145
             I+ GA +N+ D 
Sbjct: 59  ECIAAGADVNAMDC 72

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 59.7 bits (143), Expect = 4e-12
 Identities = 21/73 (28%), Positives = 44/73 (60%), Gaps = 1/73 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLS-KGADVNLKNDGGRTALHYAASKGWLKIVEL 132
            ++   +G   +H AA + N+ IV+ L+  KG++ + +++ G+T +  AA +G +++V  
Sbjct: 180 KDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMY 239

Query: 133 LISRGAKINSKDK 145
           LI +GA + + D 
Sbjct: 240 LIQQGASVEAVDA 252

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 48.2 bits (113), Expect = 5e-08
 Identities = 17/87 (19%), Positives = 25/87 (28%), Gaps = 28/87 (32%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
              +RT+LH  AS    E  E L+                                +  +
Sbjct: 30  PRHNRTVLHWIASNSSAEKSEDLIV----------------------------HEAKECI 61

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLK 128
           + GADVN  +    T L  A      +
Sbjct: 62  AAGADVNAMDCDENTPLMLAVLARRRR 88

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]} Length = 277

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 2/52 (3%)

Query: 14  LFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILL 65
           +  AA+ G       L +Q    S+   +  D T   +A +  H  +V+I  
Sbjct: 225 IMLAAQEGRIEVVMYLIQQGA--SVEAVDATDHTARQLAQANNHHNIVDIFD 274

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 79.8 bits (195), Expect = 2e-19
 Identities = 31/101 (30%), Positives = 45/101 (44%), Gaps = 7/101 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
                 T LHVAA+ G+ EV+++L+        VN  D +GW P+H+AA  G      +L
Sbjct: 195 HAKSGGTALHVAAAKGYTEVLKLLIQARYD---VNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
           +    D+   N  G+TA   A       I+  L     K N
Sbjct: 252 VENLCDMEAVNKVGQTAFDVADE----DILGYLEELQKKQN 288

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 70.5 bits (171), Expect = 6e-16
 Identities = 19/72 (26%), Positives = 35/72 (48%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
                + G   +H AA+ G   ++++L+    DVN+K+  G T LH AA  G  +   +L
Sbjct: 192 DVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRIL 251

Query: 134 ISRGAKINSKDK 145
           +     + + +K
Sbjct: 252 VENLCDMEAVNK 263

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 57.4 bits (137), Expect = 3e-11
 Identities = 19/53 (35%), Positives = 26/53 (49%)

Query: 77  VDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKI 129
           V  +  A   +A S G+   V  LL +GAD+N  N  G TALH A     + +
Sbjct: 36  VKFDDGAVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDM 88

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 48.2 bits (113), Expect = 6e-08
 Identities = 36/111 (32%), Positives = 55/111 (49%), Gaps = 3/111 (2%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
             DD  +   A S G  E V  LL     A+ +N  + +G   +H A    NV +V+ L+
Sbjct: 37  KFDDGAVFLAACSSGDTEEVLRLLE--RGAD-INYANVDGLTALHQACIDDNVDMVKFLV 93

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
             GA++N  ++ G   LH AAS G+L I E LIS+GA + + +   +    
Sbjct: 94  ENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLD 144

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 291

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.3 bits (108), Expect = 3e-07
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 1/51 (1%)

Query: 95  TIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           T +E  + K     +K D G      A S G  + V  L+ RGA IN  + 
Sbjct: 22  TDLEPPVVKRKKTKVKFDDG-AVFLAACSSGDTEEVLRLLERGADINYANV 71

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.4 bits (181), Expect = 2e-17
 Identities = 27/104 (25%), Positives = 42/104 (40%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
            +D  T LH+A    H   ++ LL        ++  ++ G   +H AA +G  + VE L 
Sbjct: 6   TEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLY 65

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           + GA V +   GG TALH A          +L+           
Sbjct: 66  AAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDAS 109

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.0 bits (175), Expect = 1e-16
 Identities = 19/60 (31%), Positives = 28/60 (46%)

Query: 82  WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKIN 141
             P+H A      +++E+LL  GAD   +  GGRT L  A  +    +  LL + GA   
Sbjct: 193 RTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEP 252

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.7 bits (161), Expect = 1e-14
 Identities = 20/58 (34%), Positives = 29/58 (50%), Gaps = 3/58 (5%)

Query: 73  VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGAD---VNLKNDGGRTALHYAASKGWL 127
           V   V E+G   +H A    +   ++ LL   A    ++L+ND G+TALH AA  G  
Sbjct: 1   VFGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEA 58

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.1 bits (131), Expect = 2e-10
 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 5/68 (7%)

Query: 46  RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGA 105
           RT LH+A       V+E+LL     A+   A    G  P+ SA    N  +  +L + GA
Sbjct: 193 RTPLHLAVEAQAASVLELLLK--AGADP-TARMYGGRTPLGSALLRPNPILARLLRAHGA 249

Query: 106 DVNLKNDG 113
                 DG
Sbjct: 250 PEP--EDG 255

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.6 bits (109), Expect = 2e-07
 Identities = 24/153 (15%), Positives = 42/153 (27%), Gaps = 22/153 (14%)

Query: 10  KDKD----LFKAAETGDSSTFKSL-SKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEIL 64
             +D    L  A           L       + L L+ND  +T LH+AA  G    VE  
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEK- 63

Query: 65  LSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNL--------------K 110
             +  +   V   +  G   +H A  +   T   +LL                       
Sbjct: 64  --LYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTP 121

Query: 111 NDGGRTALHYAASKGWLKIVELLISRGAKINSK 143
           +     A   +      +          ++ ++
Sbjct: 122 DTSHAPAAVDSQPNPENEEEPRDEDWRLQLEAE 154

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.5 bits (106), Expect = 5e-07
 Identities = 9/40 (22%), Positives = 14/40 (35%)

Query: 110 KNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNF 149
             + G TALH A        ++ L+   A     D   + 
Sbjct: 5   VTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDL 44

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]} Length = 255

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.8 bits (86), Expect = 2e-04
 Identities = 7/29 (24%), Positives = 12/29 (41%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
            + R    RT L  A    +P +  +L +
Sbjct: 218 PTARMYGGRTPLGSALLRPNPILARLLRA 246

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.9 bits (175), Expect = 9e-17
 Identities = 35/105 (33%), Positives = 56/105 (53%), Gaps = 3/105 (2%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            N +  T LH AAS    E+  +LL     AN  +A D      +H AA+ GN+ ++ +L
Sbjct: 99  VNQNGCTPLHYAASKNRHEIAVMLLE--GGANP-DAKDHYEATAMHRAAAKGNLKMIHIL 155

Query: 101 LSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
           L   A  N+++  G T LH A  +  ++  +LL+S+GA I  ++K
Sbjct: 156 LYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIENK 200

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]} Length = 223

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.5 bits (166), Expect = 2e-15
 Identities = 35/134 (26%), Positives = 52/134 (38%), Gaps = 35/134 (26%)

Query: 45  DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVT--------- 95
              ++   A  G  E ++  +  D+S  +    D++    +H A S G+           
Sbjct: 3   SNLMVCNLAYSGKLEELKESILADKS--LATRTDQDSRTALHWACSAGHTEIVEFLLQLG 60

Query: 96  ------------------------IVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE 131
                                   IV+ LL KGA VN  N  G T LHYAASK   +I  
Sbjct: 61  VPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAV 120

Query: 132 LLISRGAKINSKDK 145
           +L+  GA  ++KD 
Sbjct: 121 MLLEGGANPDAKDH 134

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.3 bits (165), Expect = 2e-15
 Identities = 25/82 (30%), Positives = 39/82 (47%), Gaps = 3/82 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN 108
           L  A       +V++L    +    VNA    G + +HSA+  G + +V  L+  GAD +
Sbjct: 148 LIHAVENNSLSMVQLL---LQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSS 204

Query: 109 LKNDGGRTALHYAASKGWLKIV 130
           LKN    T L  A S+  + I+
Sbjct: 205 LKNCHNDTPLMVARSRRVIDIL 226

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (136), Expect = 2e-11
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)

Query: 79  EEGWAPIHSAASIGNVTIVEMLLS----KGADVNLKNDGGRTALHYAASKGW 126
           E+G  P+H A   GN+  V  L++     G ++++ N+  +T LH A     
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTL 52

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.9 bits (125), Expect = 8e-10
 Identities = 24/108 (22%), Positives = 46/108 (42%), Gaps = 1/108 (0%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV-VNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           +D  T LH+A   G+   V  L+++ +     ++  +     P+H A      ++V +L+
Sbjct: 1   EDGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 60

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNF 149
           + GA     +  G+TA H A        +  L+   A      +A N+
Sbjct: 61  TAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNY 108

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]} Length = 228

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-09
 Identities = 34/104 (32%), Positives = 58/104 (55%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N D  T LHVA +    E V++LL  +  A++     + G +P+  A    ++++V++LL
Sbjct: 107 NYDGLTALHVAVNTECQETVQLLL--ERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLL 164

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GA+VN +   G +ALH A+ +G L +V  L+  GA  + K+ 
Sbjct: 165 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNC 208

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 67.9 bits (164), Expect = 3e-15
 Identities = 23/99 (23%), Positives = 50/99 (50%), Gaps = 6/99 (6%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++  ++  LH AAS G  +++E+        + VN  D++GW P+  A + G+     +L
Sbjct: 134 KDKFNQIPLHRAASVGSLKLIEL--LCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLL 191

Query: 101 LSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGA 138
           + K GA+ +L ++ G  A   A ++   ++ +  ++   
Sbjct: 192 VEKYGAEYDLVDNKGAKAEDVALNE---QVKKFFLNNVV 227

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 58.3 bits (139), Expect = 1e-11
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)

Query: 84  PIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           P+H A        V+ LL SK + +  K+  GR  LH++ S    +I   L+S+ 
Sbjct: 3   PLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 5e-09
 Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 2/56 (3%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           LH A        V+ LL      +++   D++G  P+H + S     I   LLSK 
Sbjct: 4   LHQACMENEFFKVQELL--HSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 57

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.0 bits (115), Expect = 2e-08
 Identities = 14/66 (21%), Positives = 25/66 (37%), Gaps = 5/66 (7%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           ++    T L  A + GH +   +L+     A   + VD +G      A    N  + +  
Sbjct: 168 QDKQGWTPLFHALAEGHGDAAVLLVE-KYGAEY-DLVDNKGAKAEDVAL---NEQVKKFF 222

Query: 101 LSKGAD 106
           L+   D
Sbjct: 223 LNNVVD 228

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 1e-05
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 78  DEEGWAPIHSAASIGNVTIVEMLLSKGAD-VNLKNDGGRTALHYAASKGWLKIVELLISR 136
           D+    P+H AAS+G++ ++E+L   G   VN ++  G T L +A ++G      LL+ +
Sbjct: 135 DKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEK 194

Query: 137 -GAKINSKDK 145
            GA+ +  D 
Sbjct: 195 YGAEYDLVDN 204

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 229

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.0 bits (94), Expect = 2e-05
 Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)

Query: 116 TALHYAASKGWLKIV-ELLISRGAKINSKDK 145
             LH A  +     V ELL S+ + +  KD+
Sbjct: 2   YPLHQACMENEFFKVQELLHSKPSLLLQKDQ 32

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 65.2 bits (157), Expect = 3e-14
 Identities = 23/96 (23%), Positives = 42/96 (43%), Gaps = 3/96 (3%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIV 97
           ++  ++  +T LH AA+  + E V I   +       +A D++   P+  AA  G+    
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNI---LLMHHANRDAQDDKDETPLFLAAREGSYEAS 172

Query: 98  EMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           + LL   A+  + +   R     A+ +    IV LL
Sbjct: 173 KALLDNFANREITDHMDRLPRDVASERLHHDIVRLL 208

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 55.6 bits (132), Expect = 8e-11
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)

Query: 96  IVEMLLSKGADVNLKNDG-GRTALHYAASKGWLKIVELL 133
           ++  LL++GA++N   D  G T+LH AA        + L
Sbjct: 4   VISDLLAQGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 49.8 bits (117), Expect = 1e-08
 Identities = 21/72 (29%), Positives = 34/72 (47%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           +NA D  G   +H AA++ N   V +LL   A+ + ++D   T L  AA +G  +  + L
Sbjct: 116 INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKAL 175

Query: 134 ISRGAKINSKDK 145
           +   A     D 
Sbjct: 176 LDNFANREITDH 187

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 40.2 bits (92), Expect = 2e-05
 Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 58  PEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
            +V+  LL+  + A +   +D+ G   +H AA        + L
Sbjct: 2   AQVISDLLA--QGAELNATMDKTGETSLHLAARFARADAAKRL 42

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 209

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 7/28 (25%), Positives = 14/28 (50%)

Query: 37  SLSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  + +  DR    VA+   H ++V +L
Sbjct: 181 NREITDHMDRLPRDVASERLHHDIVRLL 208

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.5 bits (155), Expect = 5e-14
 Identities = 27/104 (25%), Positives = 42/104 (40%), Gaps = 2/104 (1%)

Query: 42  NDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLL 101
           N +  T LH+A+  G+  +VE  L V   A+V       G   +H A  + N  +V +LL
Sbjct: 108 NYNGHTCLHLASIHGYLGIVE--LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL 165

Query: 102 SKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK 145
             GADVN     G +       +   +I + L     +      
Sbjct: 166 KCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLP 209

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 5e-09
 Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 4/51 (7%)

Query: 80  EGWAPIHSAASIGNVT----IVEMLLSKGADVNLKNDGGRTALHYAASKGW 126
           +G + +H A           ++  +    A +N +N+  +T LH A     
Sbjct: 1   DGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQ 51

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.6 bits (98), Expect = 4e-06
 Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 4/36 (11%)

Query: 114 GRTALHYAASKGW----LKIVELLISRGAKINSKDK 145
           G + LH A         ++++  +    A +N ++ 
Sbjct: 2   GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNN 37

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 221

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.7 bits (88), Expect = 1e-04
 Identities = 4/45 (8%), Positives = 13/45 (28%), Gaps = 2/45 (4%)

Query: 39  SLRNDDDRTLLHVAASCGHPEVVEILLS--VDESANVVNAVDEEG 81
           +       +   +        + + L    ++    +  + DEE 
Sbjct: 172 NRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEES 216

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 6e-14
 Identities = 23/127 (18%), Positives = 43/127 (33%), Gaps = 33/127 (25%)

Query: 47  TLLHVAASCGHPEVVEILLSVDESANVVNAVDEE-------------------------- 80
            LL  ++  G  ++V+ ++   +  ++ N                               
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNA 62

Query: 81  ----GWAPIHSAASIGNVTIVEMLLSKGADVNLKND-GGRTA--LHYAASKGWLKIVELL 133
               GW P+H AAS  NV + + L+  GA V        +TA        +G+ +  + L
Sbjct: 63  ADSDGWTPLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFL 122

Query: 134 ISRGAKI 140
                K+
Sbjct: 123 YGVQEKM 129

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 4e-04
 Identities = 4/37 (10%), Positives = 12/37 (32%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
             L  ++ +G   +V+ +I      +  +        
Sbjct: 3   ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALH 39

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]} Length = 154

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 59.6 bits (143), Expect = 1e-12
 Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 5/144 (3%)

Query: 6   DQTIKDKDLFKAAETGDSSTFKSLSKQ----QLLKSLSLRNDDDRTLLHVAASCGHPEVV 61
           D   K   L +A +T D                   L+  ++ D T LH+A        +
Sbjct: 2   DTAAKLHSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSL 61

Query: 62  EILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYA 121
            I+  + +++  ++    +G   +H      N   +++LL   A + + N+ G T L  A
Sbjct: 62  HIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIA 121

Query: 122 ASKGWLKIVELLISRGA-KINSKD 144
                    ELL    + + NS  
Sbjct: 122 KRLKHEHCEELLTQALSGRFNSHV 145

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.6 bits (124), Expect = 5e-10
 Identities = 14/53 (26%), Positives = 26/53 (49%)

Query: 81  GWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
               +H A    +  +VE+L+  GADV+ ++   +TA   +   G   + E+L
Sbjct: 100 KMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.8 bits (91), Expect = 2e-05
 Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 1/41 (2%)

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
           D G   L  AA  G    V +L++ GA   +     + L+ 
Sbjct: 1   DLG-KKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHL 40

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 39.1 bits (89), Expect = 5e-05
 Identities = 8/30 (26%), Positives = 12/30 (40%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDG 113
            +  AA  G    V +L++ GA       G
Sbjct: 5   KLLEAARAGQDDEVRILMANGAPFTTDWLG 34

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.5 bits (85), Expect = 2e-04
 Identities = 5/27 (18%), Positives = 14/27 (51%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEIL 64
           +  ++   +T   ++   G+ ++ EIL
Sbjct: 126 VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.8 bits (83), Expect = 3e-04
 Identities = 39/131 (29%), Positives = 54/131 (41%), Gaps = 29/131 (22%)

Query: 44  DDRTLLHVAASCGHPEVVEILLSVDESANVVN---------------------------- 75
           D    L  AA  G  + V IL++                                     
Sbjct: 1   DLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60

Query: 76  -AVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLI 134
            A  +    P+H AAS G+  IVE+LL  GADVN K+    TALH+A      ++VELLI
Sbjct: 61  DARTKVDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI 120

Query: 135 SRGAKINSKDK 145
             GA ++++ K
Sbjct: 121 KYGADVHTQSK 131

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 153

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 36.0 bits (81), Expect = 6e-04
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 49  LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEML 100
           LH A    H EVVE+L+        V+   +        +   GN  + E+L
Sbjct: 104 LHWATEHNHQEVVELLIKYGAD---VHTQSKFCKTAFDISIDNGNEDLAEIL 152

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.4 bits (121), Expect = 1e-09
 Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL 133
           VN  D  G  PIH A   G+  +V  L    +D++ ++  G T L  A  +G   +V++L
Sbjct: 94  VNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDIL 152

Query: 134 IS 135
             
Sbjct: 153 QG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 5e-05
 Identities = 9/29 (31%), Positives = 14/29 (48%)

Query: 38  LSLRNDDDRTLLHVAASCGHPEVVEILLS 66
           L  R+    T L +A   G  ++V+IL  
Sbjct: 126 LHRRDARGLTPLELALQRGAQDLVDILQG 154

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (84), Expect = 3e-04
 Identities = 12/44 (27%), Positives = 18/44 (40%), Gaps = 1/44 (2%)

Query: 84  PIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRTALHYAASKGW 126
            +  AA+ G+V  V  LL  +    +  N  G+TAL        
Sbjct: 5   RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.8 bits (78), Expect = 0.001
 Identities = 7/33 (21%), Positives = 15/33 (45%), Gaps = 1/33 (3%)

Query: 114 GRTALHYAASKGWLKIV-ELLISRGAKINSKDK 145
               L  AA++G ++ V  LL       ++ ++
Sbjct: 2   AGDRLSGAAARGDVQEVRRLLHRELVHPDALNR 34

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (114), Expect = 8e-09
 Identities = 23/123 (18%), Positives = 38/123 (30%), Gaps = 30/123 (24%)

Query: 43  DDDRTLLHVAASCGHPEVVEILLSVDESANV----------------------------- 73
           +     L  AA+ G  E V  LL    + N                              
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSARVAELLLLHGAE 60

Query: 74  -VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL 132
              A       P+H AA  G +  + +L   GA +++++  GR  +  A   G   +   
Sbjct: 61  PNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 120

Query: 133 LIS 135
           L +
Sbjct: 121 LRA 123

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 3e-05
 Identities = 10/41 (24%), Positives = 18/41 (43%)

Query: 112 DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
           +     L  AA++G ++ V  L+  GA  N+ +       Q
Sbjct: 1   EPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQ 41

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]} Length = 125

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (82), Expect = 3e-04
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 41  RNDDDRTLLHVAASCGHPEVVEILLS 66
           R+   R  + +A   GH +V   L +
Sbjct: 98  RDAWGRLPVDLAEELGHRDVARYLRA 123

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.6 bits (111), Expect = 4e-08
 Identities = 8/37 (21%), Positives = 17/37 (45%)

Query: 116 TALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ 152
             L  AA++G L+ +  L+     +N+++       Q
Sbjct: 3   NELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQ 39

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.2 bits (110), Expect = 6e-08
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 107 VNLKNDGGRTALHYAASKGWLKIVELLISRG 137
           V  +N  G TA   A   G  ++V L+ + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.7 bits (101), Expect = 9e-07
 Identities = 14/37 (37%), Positives = 21/37 (56%)

Query: 84  PIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHY 120
            + SAA+ G++  +  LL    +VN +N  GRTAL  
Sbjct: 4   ELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQV 40

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.3 bits (92), Expect = 2e-05
 Identities = 6/31 (19%), Positives = 12/31 (38%)

Query: 74  VNAVDEEGWAPIHSAASIGNVTIVEMLLSKG 104
           V   + +G      A   G   +V ++ + G
Sbjct: 126 VGHRNHKGDTACDLARLYGRNEVVSLMQANG 156

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.9 bits (91), Expect = 3e-05
 Identities = 8/27 (29%), Positives = 12/27 (44%)

Query: 40  LRNDDDRTLLHVAASCGHPEVVEILLS 66
            RN    T   +A   G  EVV ++ +
Sbjct: 128 HRNHKGDTACDLARLYGRNEVVSLMQA 154

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (84), Expect = 2e-04
 Identities = 12/38 (31%), Positives = 17/38 (44%), Gaps = 3/38 (7%)

Query: 49 LHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIH 86
          L  AA+ G  E +  LL    + N VNA +  G   + 
Sbjct: 5  LASAAARGDLEQLTSLL--QNNVN-VNAQNGFGRTALQ 39

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 118

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.3 bits (87), Expect = 6e-05
 Identities = 34/123 (27%), Positives = 49/123 (39%), Gaps = 8/123 (6%)

Query: 11  DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDES 70
           DK+   A + GD    K       +      N                  +EIL  +   
Sbjct: 3   DKEFMWALKNGDLDEVK-----DYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK 57

Query: 71  ANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV 130
              +NA D+    P+ SA   G+V+ V++LLSKGAD  +K   G TAL    ++    I 
Sbjct: 58  GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTALEATDNQA---IK 114

Query: 131 ELL 133
            LL
Sbjct: 115 ALL 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	152
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	100.0
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.97
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.97
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.96
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.96
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.96
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.96
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.96
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.96
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.96
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	99.95
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.95
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	99.95
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	99.95
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.95
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.94
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.94
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	99.94
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	99.93
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	99.93
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.93
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	99.92
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	99.92
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	99.91
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.91
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	99.9
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	99.89
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	99.88
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	99.87
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	99.86
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	99.86
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	99.86
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	99.75

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.1e-31  Score=171.21  Aligned_cols=148  Identities=26%  Similarity=0.290  Sum_probs=132.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhc-------------------------------ccccccCCCCCchHHH
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQL-------------------------------LKSLSLRNDDDRTLLH   50 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~-------------------------------~~~~~~~~~~g~t~l~   50 (152)
                      +++..+..|.||||.|+..|+.+++++++....                               +.+++.++..|.||||
T Consensus        29 ~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Ll~~~~d~~~~d~~g~tpL~  108 (223)
T d1uoha_          29 LATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLH  108 (223)
T ss_dssp             GGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTCCCHHH
T ss_pred             cCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccccccchhHHHhccCceeEeeCCCCCchhh
Confidence            356778889999999999999888888766531                               1345678888999999


Q ss_pred             HHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHH
Q 031838           51 VAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIV  130 (152)
Q Consensus        51 ~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~  130 (152)
                      +|+..++.+++++|+++|.+   ++.++..|.||||.|+..++.+++++|...+.+++..|..|.|||+.|+..++.+++
T Consensus       109 ~A~~~~~~e~~~~Ll~~g~d---~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~~i~~~d~~g~TpL~~Aa~~g~~~~v  185 (223)
T d1uoha_         109 YAASKNRHEIAVMLLEGGAN---PDAKDHYEATAMHRAAAKGNLKMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEA  185 (223)
T ss_dssp             HHHHHTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTCCCHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHCCCC---CCCcCCCCCccchhhhhcCCcchhhhhccccceeeeccCCCCceeccccccCcHHHH
Confidence            99999999999999998877   567788899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCCCCCccccccccCC
Q 031838          131 ELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       131 ~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ++|++.|++++.+|..|+||||
T Consensus       186 ~~LL~~Gad~~~~d~~g~tpl~  207 (223)
T d1uoha_         186 KLLVSQGASIYIENKEEKTPLQ  207 (223)
T ss_dssp             HHHHHTTCCSCCCCTTSCCHHH
T ss_pred             HHHHHCCCCCCCCCCCCCCHHH
Confidence            9999999999999999999986

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.7e-31  Score=170.47  Aligned_cols=79  Identities=28%  Similarity=0.383  Sum_probs=70.8

Q ss_pred             ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCccc-CCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           74 VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLK-NDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        74 ~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~-~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ++.++..|.||||+|+..++.+++++|++.+...+.. +..|.||||+|+..++.+++++|+++|++++.+|+.|+||||
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~L~  230 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLG  230 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccccccCcccccccccccccccccchhcccccccccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            3456778899999999999999999999998877754 567999999999999999999999999999999999999986

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=1.7e-30  Score=165.76  Aligned_cols=141  Identities=27%  Similarity=0.334  Sum_probs=119.9

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc-----------------
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-----------------   73 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-----------------   73 (152)
                      ++|||.|+..|+.+.++.|++.. +..++.++.+|+||||+|+..|+.+++++|++.++++..                 
T Consensus         1 n~pLh~A~~~g~~~~v~~Ll~~~-~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~   79 (229)
T d1ixva_           1 NYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVNLDDYPDDSGWTPFHIACS   79 (229)
T ss_dssp             CCHHHHHHHHTCHHHHHHHHHHC-GGGTTCCCTTSCCHHHHHHHTTCHHHHHHHHTTCTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             CHhHHHHHHcCCHHHHHHHHHcC-CCcccccCCCCCCHHHHHHHcCCccccchhhhhhcccccccccccccccccccccc
Confidence            46888888888888888888764 356777888888888888888888888888877655432                 


Q ss_pred             ---------------------------------------------------ccccCCCCChhhHHHHhcCCHHHHHHHHH
Q 031838           74 ---------------------------------------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLS  102 (152)
Q Consensus        74 ---------------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~  102 (152)
                                                                         .+.++..|.||+|.|+..++.+++++|++
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~  159 (229)
T d1ixva_          80 VGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCG  159 (229)
T ss_dssp             HTCHHHHHHHHSSSSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHHT
T ss_pred             ccccccccccccccccccccccccccccccccccccchhhhhhhhhhhcccccccCCCCCCccchhhhcccccccccccc
Confidence                                                               34456788999999999999999999998


Q ss_pred             cC-CCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-cCCCCCCccccccccCC
Q 031838          103 KG-ADVNLKNDGGRTALHYAASKGWLKIVELLIS-RGAKINSKDKACNFLYQ  152 (152)
Q Consensus       103 ~~-~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~-~g~~~~~~~~~~~t~l~  152 (152)
                      .+ .+++.+|..|.||||+|+..++.+++++|++ .|++++.+|+.|+||||
T Consensus       160 ~~~~~in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~  211 (229)
T d1ixva_         160 LGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAED  211 (229)
T ss_dssp             TTCCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGG
T ss_pred             cccccccccccccCCchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHH
Confidence            86 6788899999999999999999999999996 59999999999999996

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=7.6e-29  Score=156.66  Aligned_cols=144  Identities=26%  Similarity=0.326  Sum_probs=128.1

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhh--cccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc-------------
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQ--LLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV-------------   73 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~--~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~-------------   73 (152)
                      .|+||||.|++.|+.+.+++|++..  .+.+++.++..|+||||+|+..|+.+++++|++.+.....             
T Consensus         2 dG~TpLh~A~~~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~   81 (228)
T d1k1aa_           2 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLAC   81 (228)
T ss_dssp             TTCCHHHHHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHH
T ss_pred             CCccHHHHHHHcCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhccccccccccccccccccccccccccccccccc
Confidence            5999999999999999999998742  2367888999999999999999999999999988765433             


Q ss_pred             -------------------------------------------------------ccccCCCCChhhHHHHhcCCHHHHH
Q 031838           74 -------------------------------------------------------VNAVDEEGWAPIHSAASIGNVTIVE   98 (152)
Q Consensus        74 -------------------------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~   98 (152)
                                                                             .......+.++++.|+..+...+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~  161 (228)
T d1k1aa_          82 EHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQ  161 (228)
T ss_dssp             HTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHH
T ss_pred             ccccccchhhhhhccccccccccccccccccccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhh
Confidence                                                                   1223456788999999999999999


Q ss_pred             HHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           99 MLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        99 ~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ++++.|...+.++..|.||+++|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       162 ~~~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~Gad~n~~d~~G~TpL~  215 (228)
T d1k1aa_         162 LLLQHGANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLM  215 (228)
T ss_dssp             HHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             hhhhhccccccccccCcchHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            999999999999999999999999999999999999999999999999999997

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.96  E-value=1.1e-28  Score=162.37  Aligned_cols=141  Identities=23%  Similarity=0.303  Sum_probs=115.1

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc----------------
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV----------------   73 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~----------------   73 (152)
                      +.++|+.|+..|+++.|++|++.|  .+++.++..|.||||+|+..|+.+++++|++++.+...                
T Consensus        40 ~~t~l~~A~~~G~~~~v~~Ll~~G--advn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~~~~~~~~~~L~~a~~~~  117 (291)
T d1s70b_          40 DGAVFLAACSSGDTEEVLRLLERG--ADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCG  117 (291)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHC--CCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHHT
T ss_pred             CchHHHHHHHcCCHHHHHHHHHCC--CCCCccCCCCCcHHHHHHhcCCceeeeeeccccccccccccccccccccccccc
Confidence            346777777777777777777766  45666777777777777777777777777766543222                


Q ss_pred             --------------------------------------------------------------------------ccccCC
Q 031838           74 --------------------------------------------------------------------------VNAVDE   79 (152)
Q Consensus        74 --------------------------------------------------------------------------~~~~~~   79 (152)
                                                                                                ....+.
T Consensus       118 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (291)
T d1s70b_         118 YLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAK  197 (291)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCHHHHCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCTT
T ss_pred             ccchhhcccccCcccccccccCccccccccccccchhccccccccccccccccccccccccccchhhhcccccccccccC
Confidence                                                                                      123456


Q ss_pred             CCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           80 EGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|.||||.|+..++.+++++|++.|++++.++..|.||||+|+..|+.+++++|+++|++++.+|..|.||||
T Consensus       198 ~g~t~L~~a~~~~~~~~~~~Ll~~g~din~~~~~g~TpL~~A~~~g~~~iv~lLl~~Gadv~~~d~~G~TaL~  270 (291)
T d1s70b_         198 SGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFD  270 (291)
T ss_dssp             TCCCHHHHHHHHTCHHHHHHHHTTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCTTT
T ss_pred             CCCChhhHHHHcCChhhhcccccceecccccccCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCcCCCCCCHHH
Confidence            7889999999999999999999999999999999999999999999999999999999999999999999997

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.9e-29  Score=149.57  Aligned_cols=135  Identities=27%  Similarity=0.370  Sum_probs=123.5

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      ..|+.|+..|+++.|++|+.++ +.+++.+|..|+||||+|+ .++.+++++++..+.+   ++..+..+.+|++.++..
T Consensus         4 ~~L~~Aa~~g~~~~vk~lL~~~-~~~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~~~---~~~~~~~~~~~l~~~~~~   78 (156)
T d1bd8a_           4 DRLSGAAARGDVQEVRRLLHRE-LVHPDALNRFGKTALQVMM-FGSTAIALELLKQGAS---PNVQDTSGTSPVHDAART   78 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHTT-CCCTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHhC-CCCCCccCCCCCccccccc-cccccccccccccccc---cccccccccccccccccc
Confidence            4699999999999999999875 4678899999999999986 4888999999988877   566677899999999999


Q ss_pred             CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ++.++++++++.+++++.++..|.||||+|+..|+.+++++|+ .|++++.++..|+||||
T Consensus        79 ~~~~~~~~~l~~~~~~n~~~~~~~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~  138 (156)
T d1bd8a_          79 GFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLE  138 (156)
T ss_dssp             TCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccccccCCCCeeecccccccccccccccc-ccccccccCCCCCCHHH
Confidence            9999999999999999999999999999999999999999877 78999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1e-28  Score=156.95  Aligned_cols=149  Identities=29%  Similarity=0.335  Sum_probs=132.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc---ccccC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---VNAVD   78 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---~~~~~   78 (152)
                      +++.++..|+||||+|+..|+.+++++|++.+  .+++.++..|.|||+.++..+..++++.++..+.....   .....
T Consensus        31 ~in~~d~~g~TpLh~A~~~~~~~iv~~L~~~g--~d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  108 (221)
T d1iknd_          31 FLNFQNNLQQTPLHLAVITNQPEIAEALLGAG--CDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATN  108 (221)
T ss_dssp             CCCCCCTTCCCHHHHHHHTTCHHHHHCCCSCC--CCSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCC
T ss_pred             CcccCCCCCCcccccccccccccccccccccc--ccccccccccccccccccccccccccchhhhhcccccccccccccc
Confidence            57788899999999999999999999999987  67888899999999999999999999999886543221   23334


Q ss_pred             CCCChhhHHHHhcCCHHHHHHHHHcCCCCcccC-CCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           79 EEGWAPIHSAASIGNVTIVEMLLSKGADVNLKN-DGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        79 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~-~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..+.||++.|+..++.+++++++..|..++..+ ..|.||||+|++.|+.+++++|+++|++++.+|..|+||||
T Consensus       109 ~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~  183 (221)
T d1iknd_         109 YNGHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQ  183 (221)
T ss_dssp             TTCCCHHHHHHHTTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGG
T ss_pred             cccchhhhHHhhcCChhheeeecccCcccccccccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHH
Confidence            568899999999999999999999988887664 57999999999999999999999999999999999999996

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.96  E-value=4.4e-29  Score=144.33  Aligned_cols=103  Identities=32%  Similarity=0.373  Sum_probs=64.1

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCC
Q 031838           47 TLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGW  126 (152)
Q Consensus        47 t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~  126 (152)
                      |||++|++.|+.+++++|++.|.+   ++.++..|.||+|+|+..++.++++++++.|++++.+|..|.||||+|+..++
T Consensus         4 tpL~~A~~~g~~~~v~~Ll~~g~d---~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~din~~d~~g~tpLh~A~~~~~   80 (118)
T d1myoa_           4 KEFMWALKNGDLDEVKDYVAKGED---VNRTLEGGRKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGH   80 (118)
T ss_dssp             HHHHHHHHTTCHHHHHHHHTTTCC---CCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCTTTCCSSSCSCHHHHHHTTTC
T ss_pred             hHHHHHHHCCCHHHHHHHHHhhhc---cccccccccccccccccccccccccccccccceeeecccccccchhhhhhcCc
Confidence            566666666666666666655554   44455566666666666666666666666666666666666666666666666


Q ss_pred             HHHHHHHHhcCCCCCCccccccccCC
Q 031838          127 LKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       127 ~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .+++++|+++|++++.+|+.|+||||
T Consensus        81 ~~~v~~Ll~~Gad~~~~d~~G~t~l~  106 (118)
T d1myoa_          81 VSCVKLLLSKGADKTVKGPDGLTALE  106 (118)
T ss_dssp             CHHHHHHHTTCCCSSSSSSSTCCCCC
T ss_pred             hhhhhhhhcccccceeeCCCCCCHHH
Confidence            66666666666666666666666664

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.96  E-value=5e-28  Score=145.65  Aligned_cols=136  Identities=35%  Similarity=0.495  Sum_probs=123.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      .|||+.|++.|+.++|++|++.+.  +++ .+..|+||||+|+..++.+++..++.....   .......+.++++.++.
T Consensus         3 ~t~L~~Aa~~g~~~~v~~LL~~ga--~~~-~~~~g~t~L~~a~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~   76 (153)
T d1awcb_           3 GKKLLEAARAGQDDEVRILMANGA--PFT-TDWLGTSPLHLAAQYGHFSTTEVLLRAGVS---RDARTKVDRTPLHMAAS   76 (153)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHTC--CCC-CCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTCCCHHHHHHH
T ss_pred             CHHHHHHHHCCCHHHHHHHHHcCC--Ccc-cccCCCcccccccccccccccccccccccc---ccccccccccccccccc
Confidence            489999999999999999999883  444 588899999999999999999998876554   34445677889999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      ..+.+++++++..+++.+.++..|.|||++|+..|+.+++++|+++|++++.+|+.|.||||
T Consensus        77 ~~~~~~~~~l~~~~~~~~~~~~~g~T~L~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~  138 (153)
T d1awcb_          77 EGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLIKYGADVHTQSKFCKTAFD  138 (153)
T ss_dssp             HTCHHHHHHHHTTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             cccceeeecccccCCccccccccCchHHHhhhhcchhheeeeccccccCCcccCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999999999999999999986

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=3.5e-28  Score=146.77  Aligned_cols=135  Identities=31%  Similarity=0.471  Sum_probs=125.3

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      ++||.|+..|++++|++|++.+  .+++.++..|.||||+|+ .++.+++++|+..+.+   .+.++..+.++++.++..
T Consensus         3 ~~Lh~Aa~~g~~~~v~~Ll~~g--~d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~a~---~~~~~~~~~~~l~~~~~~   76 (156)
T d1ihba_           3 NELASAAARGDLEQLTSLLQNN--VNVNAQNGFGRTALQVMK-LGNPEIARRLLLRGAN---PDLKDRTGFAVIHDAARA   76 (156)
T ss_dssp             HHHHHHHHHTCHHHHHHHTTSC--CCTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTTCC---TTCCCTTSCCHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHCC--CCcCccCCcccccccccc-cccccccccccccccc---cccccccCcccccccccc
Confidence            7899999999999999999987  678889999999999885 7899999999999887   567788899999999999


Q ss_pred             CCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCC-CCCCccccccccCC
Q 031838           92 GNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA-KINSKDKACNFLYQ  152 (152)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~-~~~~~~~~~~t~l~  152 (152)
                      +....++.++..+..++..+..|.+|+++|+..++.+++++|+++|+ +.+.++..|+||||
T Consensus        77 ~~~~~~~~l~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~  138 (156)
T d1ihba_          77 GFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACD  138 (156)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCCHHH
Confidence            99999999999999999999999999999999999999999999886 88999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=1.3e-28  Score=143.75  Aligned_cols=121  Identities=23%  Similarity=0.296  Sum_probs=109.8

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC-hhhHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW-APIHS   87 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~-t~l~~   87 (152)
                      ++.+.||.|+..|+++++++|++.+  .+++.++..|.||+|+|+ .|+.+++++|++.+.+   ++.++..+. +|||+
T Consensus         2 p~~~~L~~Aa~~G~~~~v~~Ll~~g--ad~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~---~~~~~~~~~~~~L~~   75 (125)
T d1bi7b_           2 PSADWLATAAARGRVEEVRALLEAG--ANPNAPNSYGRRPIQVMM-MGSARVAELLLLHGAE---PNCADPATLTRPVHD   75 (125)
T ss_dssp             CSTTHHHHHHHHTCHHHHHHHHTTT--CCTTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCC---CCCCCTTTCCCHHHH
T ss_pred             CChhHHHHHHHCCCHHHHHHHHHcC--Cccccccccccccccccc-cccccccccccccccc---ccccccccccccccc
Confidence            4568999999999999999999987  678889999999999775 7999999999999887   566666654 79999


Q ss_pred             HHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHh
Q 031838           88 AASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLIS  135 (152)
Q Consensus        88 a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~  135 (152)
                      |+..|+.+++++|++.|++++.+|..|.||+++|+..|+.+++++|+.
T Consensus        76 A~~~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~~A~~~g~~~~v~~Lls  123 (125)
T d1bi7b_          76 AAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRA  123 (125)
T ss_dssp             HHHHTCHHHHHHHHHHTCCSSCCCTTCCCHHHHHHHHTCHHHHHHHSS
T ss_pred             ccccccccccccccccccccccccCCCCCHHHHHHHcCCHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999875

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.2e-27  Score=152.23  Aligned_cols=143  Identities=34%  Similarity=0.427  Sum_probs=98.6

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc---------------
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV---------------   73 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------------   73 (152)
                      .+++.|+.++..|+++.|+.++... +..++.+|..|+||||+|+..|+.+++++++..+.....               
T Consensus         2 ~~~~~~~~~a~~G~~~~v~~~l~~~-~~~~~~~D~~G~TpLh~Aa~~g~~e~~~~l~~~~~~~~~~~~~~~~~~~~~~~~   80 (223)
T d1uoha_           2 VSNLMVCNLAYSGKLEELKESILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASA   80 (223)
T ss_dssp             CSSSHHHHHHHTTCHHHHHHHHHHC-GGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCSCCCCTTCCCHHHHHHHH
T ss_pred             cCHHHHHHHHHhCCHHHHHHHHHhC-CCcCcCcCCCCCCHHHHHHHhhhhcccccccccccccccccccccccccccccc
Confidence            4678899999999999999998876 467889999999999999999999999988876554221               


Q ss_pred             ---------------ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCC
Q 031838           74 ---------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGA  138 (152)
Q Consensus        74 ---------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~  138 (152)
                                     ++..+..|.||||+|+..++.+++++|++.|++++..+..|.||+++|+..+..+++++|.+.|.
T Consensus        81 ~~~~i~~~Ll~~~~d~~~~d~~g~tpL~~A~~~~~~e~~~~Ll~~g~d~~~~~~~~~t~L~~a~~~~~~~~~~~L~~~~~  160 (223)
T d1uoha_          81 GRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYKA  160 (223)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTC
T ss_pred             cccchhHHHhccCceeEeeCCCCCchhhHHHHcCCHHHHHHHHHCCCCCCCcCCCCCccchhhhhcCCcchhhhhccccc
Confidence                           23344555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CCCCccccccccCC
Q 031838          139 KINSKDKACNFLYQ  152 (152)
Q Consensus       139 ~~~~~~~~~~t~l~  152 (152)
                      +++..+..|+||||
T Consensus       161 ~i~~~d~~g~TpL~  174 (223)
T d1uoha_         161 STNIQDTEGNTPLH  174 (223)
T ss_dssp             CSCCCCTTCCCHHH
T ss_pred             eeeeccCCCCceec
Confidence            55555555555553

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.7e-28  Score=159.70  Aligned_cols=144  Identities=17%  Similarity=0.187  Sum_probs=114.0

Q ss_pred             CCcCcC-CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCH-------HHHHHHHhcCCCCc
Q 031838            1 MDMDID-QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP-------EVVEILLSVDESAN   72 (152)
Q Consensus         1 ~~~~~~-~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~-------~~~~~ll~~~~~~~   72 (152)
                      +|+|.+ +..|+||||+|+..|+.++|+.|++.+  .+++.+|..|+||||.||..++.       ++++++.   ..  
T Consensus        97 ~dvn~~~D~~G~T~LH~Aa~~g~~~~v~~Ll~~g--ad~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l~---~~--  169 (301)
T d1sw6a_          97 LNLNIPVDEHGNTPLHWLTSIANLELVKHLVKHG--SNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY---PC--  169 (301)
T ss_dssp             CCSCSCCSTTCCCHHHHHHHTTCHHHHHHHHHTT--CCTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHHG---GG--
T ss_pred             CCcCcCcCCCCCCHHHHHHHcCCHHHHHHHHHCC--CCCCcCCcccccHHHHhhhcccchhhhhHHHHHHHHh---hh--
Confidence            356655 788999999999999999999999987  68889999999999999987642       3334332   22  


Q ss_pred             cccccCCCCChhhHHHHhcCC----HH--------HHHHHHHcCCC----------------------------------
Q 031838           73 VVNAVDEEGWAPIHSAASIGN----VT--------IVEMLLSKGAD----------------------------------  106 (152)
Q Consensus        73 ~~~~~~~~~~t~l~~a~~~~~----~~--------~~~~l~~~~~~----------------------------------  106 (152)
                       ....+..|+||||.++..+.    ..        ++.++...+..                                  
T Consensus       170 -~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (301)
T d1sw6a_         170 -LILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWII  248 (301)
T ss_dssp             -GGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHGGGCCEEEC----------------CHHHHHCSHHHHH
T ss_pred             -hhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHhcCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHH
Confidence             45567889999998775332    22        23334333221                                  


Q ss_pred             ---CcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          107 ---VNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       107 ---~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                         ++.+|..|.||||+|++.|+.+++++|+++|++++.+|+.|.|||+
T Consensus       249 ~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~~G~Tpl~  297 (301)
T d1sw6a_         249 ANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD  297 (301)
T ss_dssp             HHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCTTSCCGGG
T ss_pred             hcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence               5677889999999999999999999999999999999999999986

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.95  E-value=2.4e-29  Score=145.42  Aligned_cols=107  Identities=36%  Similarity=0.502  Sum_probs=101.0

Q ss_pred             ChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHh
Q 031838           11 DKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAAS   90 (152)
Q Consensus        11 ~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~   90 (152)
                      +|||++|++.|+++.+++|++.+  .+++.++..|+||||+|+..++.+++++++..+.+   ++.++..|.||||+|+.
T Consensus         3 ~tpL~~A~~~g~~~~v~~Ll~~g--~d~n~~~~~g~t~lh~A~~~~~~~~~~~ll~~g~d---in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_           3 DKEFMWALKNGDLDEVKDYVAKG--EDVNRTLEGGRKPLHYAADCGQLEILEFLLLKGAD---INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHTTT--CCCCCCSSSSCCTTHHHHHHSTTTHHHHHHHSSCT---TTCCSSSCSCHHHHHHT
T ss_pred             ChHHHHHHHCCCHHHHHHHHHhh--hccccccccccccccccccccccccccccccccce---eeecccccccchhhhhh
Confidence            57999999999999999999987  67888999999999999999999999999999888   67788999999999999


Q ss_pred             cCCHHHHHHHHHcCCCCcccCCCCCcHHHHHH
Q 031838           91 IGNVTIVEMLLSKGADVNLKNDGGRTALHYAA  122 (152)
Q Consensus        91 ~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~  122 (152)
                      .++.+++++|++.|++++.+|..|.||+++|.
T Consensus        78 ~~~~~~v~~Ll~~Gad~~~~d~~G~t~l~~a~  109 (118)
T d1myoa_          78 EGHVSCVKLLLSKGADKTVKGPDGLTALEATD  109 (118)
T ss_dssp             TTCCHHHHHHHTTCCCSSSSSSSTCCCCCTCS
T ss_pred             cCchhhhhhhhcccccceeeCCCCCCHHHHHh
Confidence            99999999999999999999999999999884

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=4.3e-27  Score=152.04  Aligned_cols=100  Identities=31%  Similarity=0.374  Sum_probs=91.4

Q ss_pred             cccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcH
Q 031838           38 LSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTA  117 (152)
Q Consensus        38 ~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~p  117 (152)
                      ++.++..|.||||+|+..++.+++++|++.+...  ....+..|.||||+|+..++.+++++|+++|++++.+|..|.||
T Consensus       151 in~~d~~g~TpLh~A~~~~~~~~v~~Ll~~~~~~--~~~~~~~g~TpL~~A~~~~~~~~v~~Ll~~gadin~~d~~g~t~  228 (255)
T d1oy3d_         151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADL--NKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTP  228 (255)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCH
T ss_pred             cccccccCcccccccccccccccccchhcccccc--cccccccccccccccccccHHHHHHHHHHCCCCCCCCCCCCCCH
Confidence            3456778999999999999999999999988764  33456789999999999999999999999999999999999999


Q ss_pred             HHHHHHcCCHHHHHHHHhcCCC
Q 031838          118 LHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus       118 l~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      |++|+..++.+++++|+++||+
T Consensus       229 L~~A~~~~~~~i~~~Ll~~Ga~  250 (255)
T d1oy3d_         229 LGSALLRPNPILARLLRAHGAP  250 (255)
T ss_dssp             HHHHHTSSCHHHHHHHHHTTCC
T ss_pred             HHHHHHCCCHHHHHHHHHcCCC
Confidence            9999999999999999999996

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.95  E-value=3.6e-27  Score=153.90  Aligned_cols=149  Identities=23%  Similarity=0.337  Sum_probs=128.9

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCC---CC-----cc
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDE---SA-----NV   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~---~~-----~~   73 (152)
                      |+|..+..|.||||+|+..|+.+++++|++.+  .+++.++..|.||+++|+..++.+++..+.....   ..     ..
T Consensus        66 dvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~G--ad~n~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  143 (277)
T d2fo1e1          66 DVNAMDCDENTPLMLAVLARRRRLVAYLMKAG--ADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNG  143 (277)
T ss_dssp             CTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTT--CCSCCCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTS
T ss_pred             CccccCCCCCeeeccccccccccccccccccc--cccccccccccccccchhhhcchhhhhhhhhccccccccccccccc
Confidence            78889999999999999999999999999987  6788899999999999999999888877754311   00     00


Q ss_pred             ------------------------------------ccccCCCCChhhHHHHhcCCHHHHHHHH-HcCCCCcccCCCCCc
Q 031838           74 ------------------------------------VNAVDEEGWAPIHSAASIGNVTIVEMLL-SKGADVNLKNDGGRT  116 (152)
Q Consensus        74 ------------------------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~-~~~~~~~~~~~~~~~  116 (152)
                                                          ....+..|.|+||.++..++.+++++++ ..+.+.+.+|..|.|
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~t  223 (277)
T d2fo1e1         144 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKT  223 (277)
T ss_dssp             CCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTSSSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCC
T ss_pred             chhHHHHHhcccccccccccccccccccccccccccccccccCCCCccccccccccccccccccccccccccccCCCCCC
Confidence                                                2334567889999999999999998766 558889999999999


Q ss_pred             HHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          117 ALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       117 pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |||+|+..|+.+++++|+++|++++.+|..|+||||
T Consensus       224 pL~~A~~~g~~~iv~~Ll~~gadin~~d~~G~T~L~  259 (277)
T d2fo1e1         224 PIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQ  259 (277)
T ss_dssp             HHHHHHHHTCHHHHHHHHHTTCCSSCCCSSSCCHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHCcCCCCCcCCCCCCHHH
Confidence            999999999999999999999999999999999986

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.5e-27  Score=137.58  Aligned_cols=121  Identities=30%  Similarity=0.448  Sum_probs=108.6

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhc
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASI   91 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~   91 (152)
                      +.|+.|+..|+++.|++|++.+  .+++.++..|+||||+|+..++.++++++++.+.+   .+.+|..|+||||+|+..
T Consensus         3 ~lL~~A~~~G~~~~v~~Ll~~g--~d~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~---~~~~d~~g~tpLh~A~~~   77 (130)
T d1ycsb1           3 ALLLDSSLEGEFDLVQRIIYEV--DDPSLPNDEGITALHNAVCAGHTEIVKFLVQFGVN---VNAADSDGWTPLHCAASC   77 (130)
T ss_dssp             HHHHHHHHHTCHHHHHHHTSTT--SSCCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCTTCCCHHHHHHHT
T ss_pred             HHHHHHHHcCCHHHHHHHHHcC--CCccccccccccccccccccccccccccccccccc---cccccccCcccccccchh
Confidence            6799999999999999999987  67889999999999999999999999999999887   677889999999999999


Q ss_pred             CCHHHHHHHHHcCCCCcccCC-CCCcHHHHH--HHcCCHHHHHHHHhcC
Q 031838           92 GNVTIVEMLLSKGADVNLKND-GGRTALHYA--ASKGWLKIVELLISRG  137 (152)
Q Consensus        92 ~~~~~~~~l~~~~~~~~~~~~-~~~~pl~~a--~~~~~~~~~~~Ll~~g  137 (152)
                      |+.+++++|+++|++++..+. .+.+|+.++  ...|+.+++++|+..+
T Consensus        78 g~~~~v~~Ll~~ga~v~~~~~~~~~~~~~~~~a~~~g~~eiv~~L~~~~  126 (130)
T d1ycsb1          78 NNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGVQ  126 (130)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCSSSCCCHHHHCCSSSTTCCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCCcccccCCCCCCHHHHHHHHHcChHHHHHHHHhHH
Confidence            999999999999999987764 578887766  4568899999998753

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=7.1e-26  Score=136.13  Aligned_cols=126  Identities=21%  Similarity=0.245  Sum_probs=109.9

Q ss_pred             hHHHHHHHhCCHHHHHHHHHhhcccc----cccCCCCCchHHHHHHHc---CCHHHHHHHHhcCCCCccccccCCCCChh
Q 031838           12 KDLFKAAETGDSSTFKSLSKQQLLKS----LSLRNDDDRTLLHVAASC---GHPEVVEILLSVDESANVVNAVDEEGWAP   84 (152)
Q Consensus        12 ~~l~~a~~~~~~~~~~~ll~~~~~~~----~~~~~~~g~t~l~~a~~~---~~~~~~~~ll~~~~~~~~~~~~~~~~~t~   84 (152)
                      ..|..|++.+++..+..++..+....    ....+..|+||||+|+..   +..+++++|++.+.+   ++.++..|.||
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gad---in~~d~~g~Tp   84 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGN---LDKQTGKGSTA   84 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSC---TTCCCTTCCCH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCC---hhhhhhhhccc
Confidence            46789999999999999988763211    223366799999999975   578999999999888   77889999999


Q ss_pred             hHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCC
Q 031838           85 IHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKI  140 (152)
Q Consensus        85 l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~  140 (152)
                      ||+|+..|+.+++++|++.|++++.+|..|.||+++|+..++.+++++|++.++..
T Consensus        85 Lh~A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~~A~~~~~~~i~~~L~~~~~~~  140 (154)
T d1dcqa1          85 LHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAKRLKHEHCEELLTQALSGR  140 (154)
T ss_dssp             HHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHHTTC
T ss_pred             cccccccccccccccccccCccccccCCCCCCHHHHHHHcCCHHHHHHHHHhCCCC
Confidence            99999999999999999999999999999999999999999999999999977543

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.94  E-value=1.3e-26  Score=145.73  Aligned_cols=141  Identities=24%  Similarity=0.296  Sum_probs=120.9

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHH------------------------
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVE------------------------   62 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~------------------------   62 (152)
                      +..|.||||+|+..|+.+++++|++.+  ..++.++..+.++++.++..+......                        
T Consensus        20 d~~G~t~L~~A~~~g~~e~v~~Ll~~g--~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   97 (209)
T d1ot8a_          20 DKTGETSLHLAARFARADAAKRLLDAG--ADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILA   97 (209)
T ss_dssp             HHHCCCHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHTCTTCCTTCCCTTCCCHHHHH
T ss_pred             CCCCCCHHHHHHHcCCHHHHHHHHhhc--ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            567999999999999999999999987  566777777788888777666544333                        


Q ss_pred             ----------HHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHH
Q 031838           63 ----------ILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVEL  132 (152)
Q Consensus        63 ----------~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~  132 (152)
                                .+...+.+   ++..+..|.|+++.++..+...+++.+++.+.+++..|..|.||||+|+..|+.+++++
T Consensus        98 ~~~~~~~~~~~L~~~~~~---~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~TpL~~A~~~g~~~~v~~  174 (209)
T d1ot8a_          98 ARLAIEGMVEDLITADAD---INAADNSGKTALHWAAAVNNTEAVNILLMHHANRDAQDDKDETPLFLAAREGSYEASKA  174 (209)
T ss_dssp             HHTTCTTHHHHHHHTTCC---TTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHH
T ss_pred             ccccchhhhhhhhhhccc---ccccCCCCCCcchhhcccCcceeeeeeccccccccccccccccccchhccccHHHHHHH
Confidence                      33333333   45667889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCCCCCccccccccCC
Q 031838          133 LISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       133 Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+++|++++.+|..|.||||
T Consensus       175 Ll~~gad~n~~d~~g~Tpl~  194 (209)
T d1ot8a_         175 LLDNFANREITDHMDRLPRD  194 (209)
T ss_dssp             HHHTTCCTTCCCTTSCCHHH
T ss_pred             HHHCCCCCCCcCCCCCCHHH
Confidence            99999999999999999986

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=6.3e-26  Score=136.91  Aligned_cols=128  Identities=24%  Similarity=0.330  Sum_probs=116.9

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.|||+.|+ .|+.+.+++|++.+  .+++..+..|.+|++.++..++.++++.+++.+.+   ++.++..|
T Consensus        28 ~~n~~d~~g~t~L~~A~-~~~~~~v~~Ll~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~~---~n~~~~~~  101 (156)
T d1bd8a_          28 HPDALNRFGKTALQVMM-FGSTAIALELLKQG--ASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGAD---VNVPDGTG  101 (156)
T ss_dssp             CTTCCCTTSCCHHHHSC-TTCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCC---SCCCCTTS
T ss_pred             CCCccCCCCCccccccc-cccccccccccccc--ccccccccccccccccccccccccccccccccccc---cccccCCC
Confidence            67788899999999987 58899999999987  56778888899999999999999999999998877   66778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhc
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISR  136 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~  136 (152)
                      .||||+|+..|+.+++++|+ .|++++.+|..|.|||++|+..|+.+++++|+++
T Consensus       102 ~t~L~~A~~~~~~~i~~~L~-~~~~~~~~d~~G~TpL~~A~~~g~~~iv~~Ll~h  155 (156)
T d1bd8a_         102 ALPIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH  155 (156)
T ss_dssp             CCHHHHHHHHTCHHHHHHHH-TTSCTTCCCTTSCCHHHHHHHSCCHHHHHHHHTT
T ss_pred             Ceeecccccccccccccccc-ccccccccCCCCCCHHHHHHHcCCHHHHHHHHhh
Confidence            99999999999999999887 6889999999999999999999999999999875

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.6e-26  Score=155.25  Aligned_cols=142  Identities=32%  Similarity=0.420  Sum_probs=120.1

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..+.++|+.|+..++.+.+++++...  ...+..+..|.||++.|+..++.+++++|++++.+   .+..+..+.|||
T Consensus       227 ~~~~~~t~l~~a~~~~~~~~~~~~~~~~--~~~~~~~~~g~~~l~~a~~~~~~~i~~~Ll~~g~~---~~~~~~~~~t~L  301 (408)
T d1n11a_         227 ESVQGVTPLHLAAQEGHAEMVALLLSKQ--ANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVM---VDATTRMGYTPL  301 (408)
T ss_dssp             CCTTCCCHHHHHHHTTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHHHTCC---TTCCCSSCCCHH
T ss_pred             cCCCCCCHHHHHHHhCcHhHhhhhhccc--cccccccCCCCChhhhhhhcCcHHHHHHHHHCCCc---cccccccccccc
Confidence            4455778888888888888888887765  45666777888999999999999999988888877   556667788899


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +.++..++.++++++++.|++++.+|..|.||||.|++.|+.+++++|+++|++++.+|+.|+||||
T Consensus       302 ~~~~~~~~~~~~~~ll~~g~~in~~d~~G~T~Lh~A~~~g~~~iv~~Ll~~GAd~n~~d~~G~t~L~  368 (408)
T d1n11a_         302 HVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLA  368 (408)
T ss_dssp             HHHHHSSCSHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCSCCCCSSSCCHHH
T ss_pred             hhhcccCcceeeeeeccccccccccCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCCCCCCHHH
Confidence            9999888888999998888888888888999999999999999999999999999999999999875

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=9.4e-25  Score=131.51  Aligned_cols=130  Identities=26%  Similarity=0.386  Sum_probs=119.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      |++..+..|.||||.|+ .|+.+++++|++.+  .+++..+..|.++++.++..+..+.++.++..+..   .+..+..+
T Consensus        26 d~n~~d~~g~TpL~~A~-~~~~ei~~~Ll~~~--a~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~   99 (156)
T d1ihba_          26 NVNAQNGFGRTALQVMK-LGNPEIARRLLLRG--ANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQAD---VNIEDNEG   99 (156)
T ss_dssp             CTTCCCTTSCCHHHHCC-SSCHHHHHHHHHTT--CCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---TTCCCTTS
T ss_pred             CcCccCCcccccccccc-cccccccccccccc--cccccccccCccccccccccccccccccccccccc---cccccccc
Confidence            77888999999999885 79999999999987  67888899999999999999999999999988777   66778899


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCC-CCcccCCCCCcHHHHHHHcCCHHHHHHHHhcC
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGA-DVNLKNDGGRTALHYAASKGWLKIVELLISRG  137 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~-~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g  137 (152)
                      .++++.|+..++.+++++|++++. +.+.++..|.||||+|+..++.+++++|+++|
T Consensus       100 ~~~l~~a~~~~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~~~~~~iv~~Ll~~G  156 (156)
T d1ihba_         100 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSLMQANG  156 (156)
T ss_dssp             CCHHHHHHHTTCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTC
T ss_pred             ccccccccccccccccccccccccccccccCCCCCCHHHHHHHcCCHHHHHHHHhcC
Confidence            999999999999999999998865 78999999999999999999999999999987

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.93  E-value=8.8e-25  Score=143.55  Aligned_cols=62  Identities=32%  Similarity=0.494  Sum_probs=56.0

Q ss_pred             CCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCc
Q 031838           44 DDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVN  108 (152)
Q Consensus        44 ~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~  108 (152)
                      .+.|+|+.||..|+.+++++|++.|.+   ++.+|..|.||||+|+..|+.+++++|++.+.+..
T Consensus        39 ~~~t~l~~A~~~G~~~~v~~Ll~~Gad---vn~~d~~G~T~L~~A~~~g~~eiv~~Ll~~~~~~~  100 (291)
T d1s70b_          39 DDGAVFLAACSSGDTEEVLRLLERGAD---INYANVDGLTALHQACIDDNVDMVKFLVENGANIN  100 (291)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHCCC---TTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTT
T ss_pred             CCchHHHHHHHcCCHHHHHHHHHCCCC---CCccCCCCCcHHHHHHhcCCceeeeeecccccccc
Confidence            456999999999999999999999988   67888999999999999999999999999877633

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.9e-24  Score=141.37  Aligned_cols=135  Identities=27%  Similarity=0.308  Sum_probs=119.3

Q ss_pred             CCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcC----CHHHHHHHHhcCCCCccccccCCCCC
Q 031838            7 QTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCG----HPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         7 ~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~----~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ...|.++|+.|++.|+.+.+++|++.. +.+++..+..|.+++..+...+    ...++++|++++.+   ++.++..|.
T Consensus       145 ~~~g~t~L~~A~~~~~~~~~~~Ll~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~---~n~~~~~g~  220 (285)
T d1wdya_         145 RKGGATALMDAAEKGHVEVLKILLDEM-GADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGAD---VNVRGERGK  220 (285)
T ss_dssp             TCCCCCHHHHHHHHTCHHHHHHHHHTS-CCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCC---SSCCCTTSC
T ss_pred             cccCchHHHHHHHcCCHHHHHHHHhcc-CCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCC---CCccCCCCC
Confidence            456889999999999999999999864 4678888888888877665443    45688999998888   667788999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCccc
Q 031838           83 APIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDK  145 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~  145 (152)
                      ||||.|+..++.+++++|++. |++++.+|.+|.||||+|+..++.+++++|+++||+++.+|.
T Consensus       221 t~L~~a~~~~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~~~~~~eiv~~Ll~~GAd~n~~d~  284 (285)
T d1wdya_         221 TPLILAVEKKHLGLVQRLLEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL  284 (285)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSSCSCCSSC
T ss_pred             CccchhhhcCcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCcccC
Confidence            999999999999999999975 899999999999999999999999999999999999998874

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.5e-24  Score=148.13  Aligned_cols=149  Identities=30%  Similarity=0.451  Sum_probs=94.1

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcc--------
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANV--------   73 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~--------   73 (152)
                      |++..+..|.||||.|+..|+.+++++|++.+  .+++.++..|.|||++|+..|+.+++++++........        
T Consensus        25 ~in~~d~~g~TpL~~A~~~g~~~iv~~Ll~~g--adi~~~~~~g~t~L~~A~~~g~~~~~~~Ll~~~~~~~~~~~~~~~~  102 (408)
T d1n11a_          25 SPNVSNVKVETPLHMAARAGHTEVAKYLLQNK--AKVNAKAKDDQTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTP  102 (408)
T ss_dssp             CSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHT--CCSSCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCH
T ss_pred             CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCc--CCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHhhhccccccccccch
Confidence            34444555555555555555555555555554  34455555555555555555555555555443221100        


Q ss_pred             ----------------------ccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 031838           74 ----------------------VNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE  131 (152)
Q Consensus        74 ----------------------~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~  131 (152)
                                            ....+..+.++++.|+..++.+++++|++.+.+++..+..+.+||++|+..++.++++
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~v~~ll~~~~~~~~~~~~~~~~L~~A~~~~~~~~~~  182 (408)
T d1n11a_         103 LHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVK  182 (408)
T ss_dssp             HHHHHHHTCHHHHHHHHHTTCCSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCSSCCCHHHHHHHTTCHHHHH
T ss_pred             hhhhhhhcccccccccccccccccccccccchHHHHHHHcCCHHHHHHHHHcCCCCCcCCCcCchHHHHHHHcCCHHHHH
Confidence                                  1222344555566666666667777777777777777778888888888888888888


Q ss_pred             HHHhcCCCCCCccccccccCC
Q 031838          132 LLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       132 ~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      +|+++|++++..+..|.||+|
T Consensus       183 ~Ll~~g~~~~~~~~~~~t~l~  203 (408)
T d1n11a_         183 LLLPRGGSPHSPAWNGYTPLH  203 (408)
T ss_dssp             HHGGGTCCSCCCCTTCCCHHH
T ss_pred             HHHhcCCcccccCCCCCCcch
Confidence            888888888888888888764

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.3e-25  Score=130.57  Aligned_cols=103  Identities=24%  Similarity=0.344  Sum_probs=95.5

Q ss_pred             chHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcC
Q 031838           46 RTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKG  125 (152)
Q Consensus        46 ~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~  125 (152)
                      .++|+.|+..|+.+++++|++.+.+   ++.++..|.||||+|+..++.+++++|++.|++++.+|.+|+||||+|+..|
T Consensus         2 l~lL~~A~~~G~~~~v~~Ll~~g~d---~n~~d~~g~t~Lh~A~~~~~~~~~~~ll~~g~~~~~~d~~g~tpLh~A~~~g   78 (130)
T d1ycsb1           2 LALLLDSSLEGEFDLVQRIIYEVDD---PSLPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCN   78 (130)
T ss_dssp             HHHHHHHHHHTCHHHHHHHTSTTSS---CCCCCTTSCCHHHHHHHHTCHHHHHHHHHHTCCTTCCCTTCCCHHHHHHHTT
T ss_pred             hHHHHHHHHcCCHHHHHHHHHcCCC---ccccccccccccccccccccccccccccccccccccccccCcccccccchhh
Confidence            3689999999999999999999888   6778889999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHhcCCCCCCccc-cccccC
Q 031838          126 WLKIVELLISRGAKINSKDK-ACNFLY  151 (152)
Q Consensus       126 ~~~~~~~Ll~~g~~~~~~~~-~~~t~l  151 (152)
                      +.+++++|+++|++++..+. .++||+
T Consensus        79 ~~~~v~~Ll~~ga~v~~~~~~~~~~~~  105 (130)
T d1ycsb1          79 NVQVCKFLVESGAAVFAMTYSDMQTAA  105 (130)
T ss_dssp             CHHHHHHHHHTTCCTTCCCSSSCCCHH
T ss_pred             HHHHHHHHHHcCCCcccccCCCCCCHH
Confidence            99999999999999998764 477764

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=142.44  Aligned_cols=141  Identities=26%  Similarity=0.390  Sum_probs=110.7

Q ss_pred             CChHHHHHHHhCCHHHHHHHHHhhcccccccCC-CCCchHHHHHHHcCCHHHHHHHHhcCCCCcc---------------
Q 031838           10 KDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRN-DDDRTLLHVAASCGHPEVVEILLSVDESANV---------------   73 (152)
Q Consensus        10 ~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~-~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~---------------   73 (152)
                      +++.|+.|++.|++++|++|++.|  .+++.++ ..|.||||+|+..|+.+++++++..+.....               
T Consensus         5 ~~~~L~~Ai~~~~~e~vk~Ll~~G--~din~~~~~~g~tpL~~A~~~~~~eiv~~L~~~~~~~~~~~~~~~~~~~~~~~~   82 (285)
T d1wdya_           5 DNHLLIKAVQNEDVDLVQQLLEGG--ANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIA   82 (285)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTT--CCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred             CcHHHHHHHHcCCHHHHHHHHHCC--CCcCccCCCCCCCHHHHHHHcCCHHHhhhhccccccccccccccchhhHHHhhc
Confidence            468899999999999999999887  5666554 4688999999999999999888876543221               


Q ss_pred             ----------------------------------------------------------ccccCCCCChhhHHHHhcCCHH
Q 031838           74 ----------------------------------------------------------VNAVDEEGWAPIHSAASIGNVT   95 (152)
Q Consensus        74 ----------------------------------------------------------~~~~~~~~~t~l~~a~~~~~~~   95 (152)
                                                                                .......|.||||.|+..++.+
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~~  162 (285)
T d1wdya_          83 GSVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVE  162 (285)
T ss_dssp             TCHHHHHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHHHHHHHHTCHH
T ss_pred             CCccccchhhhhcccccccccCCCchhHHHHHhcchhhhhhhhhhcccccccccchhhhhhhcccCchHHHHHHHcCCHH
Confidence                                                                      1122345778899998888877


Q ss_pred             HHHHHHHc-C-------------------------------------CCCcccCCCCCcHHHHHHHcCCHHHHHHHHh-c
Q 031838           96 IVEMLLSK-G-------------------------------------ADVNLKNDGGRTALHYAASKGWLKIVELLIS-R  136 (152)
Q Consensus        96 ~~~~l~~~-~-------------------------------------~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~-~  136 (152)
                      ++++|++. |                                     ++++.++..|.||||.|+..++.+++++|++ .
T Consensus       163 ~~~~Ll~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~~~Li~~ga~~n~~~~~g~t~L~~a~~~~~~~~v~~lL~~~  242 (285)
T d1wdya_         163 VLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQE  242 (285)
T ss_dssp             HHHHHHHTSCCCTTCCCTTSCCHHHHHHHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCHHHHHHHTTCHHHHHHHHHSS
T ss_pred             HHHHHHhccCCCcccccCCCCcccccccccccchHHHHHHHHHHHCCCCCCccCCCCCCccchhhhcCcHHHHHHHHHcC
Confidence            77777653 3                                     3344567789999999999999999999997 5


Q ss_pred             CCCCCCccccccccCC
Q 031838          137 GAKINSKDKACNFLYQ  152 (152)
Q Consensus       137 g~~~~~~~~~~~t~l~  152 (152)
                      |++++.+|..|+||||
T Consensus       243 g~din~~d~~G~TpL~  258 (285)
T d1wdya_         243 HIEINDTDSDGKTALL  258 (285)
T ss_dssp             SCCTTCCCTTSCCHHH
T ss_pred             CCCCcCCCCCCCCHHH
Confidence            8999999999999986

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=3.4e-25  Score=129.05  Aligned_cols=104  Identities=28%  Similarity=0.398  Sum_probs=95.9

Q ss_pred             CchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCC-cHHHHHHH
Q 031838           45 DRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGR-TALHYAAS  123 (152)
Q Consensus        45 g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~-~pl~~a~~  123 (152)
                      +.++||+|+..|+.+++++|+++|.+   ++.++..|.|++|.|+ .|+.+++++|++.|++++.++..+. +|||+|+.
T Consensus         3 ~~~~L~~Aa~~G~~~~v~~Ll~~gad---~n~~~~~g~t~l~~a~-~g~~~~v~~Ll~~ga~~~~~~~~~~~~~L~~A~~   78 (125)
T d1bi7b_           3 SADWLATAAARGRVEEVRALLEAGAN---PNAPNSYGRRPIQVMM-MGSARVAELLLLHGAEPNCADPATLTRPVHDAAR   78 (125)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTTTCC---TTCCCSSSCCTTTSSC-TTCHHHHHHHHTTTCCCCCCCTTTCCCHHHHHHH
T ss_pred             ChhHHHHHHHCCCHHHHHHHHHcCCc---cccccccccccccccc-cccccccccccccccccccccccccccccccccc
Confidence            46899999999999999999999887   6777889999998664 6999999999999999999888776 69999999


Q ss_pred             cCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          124 KGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       124 ~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      .|+.+++++|+++|++++.+|..|+||||
T Consensus        79 ~g~~~~v~~Ll~~ga~~~~~d~~G~T~l~  107 (125)
T d1bi7b_          79 EGFLDTLVVLHRAGARLDVRDAWGRLPVD  107 (125)
T ss_dssp             HTCHHHHHHHHHHTCCSSCCCTTCCCHHH
T ss_pred             cccccccccccccccccccccCCCCCHHH
Confidence            99999999999999999999999999986

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=4.3e-23  Score=123.78  Aligned_cols=123  Identities=33%  Similarity=0.389  Sum_probs=111.1

Q ss_pred             CCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhh
Q 031838            6 DQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPI   85 (152)
Q Consensus         6 ~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l   85 (152)
                      .+..|.||||+|+..++.+.+..++...  .........+.++++.++...+.+++++++..+.+   .+.++..|.|||
T Consensus        30 ~~~~g~t~L~~a~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~g~T~L  104 (153)
T d1awcb_          30 TDWLGTSPLHLAAQYGHFSTTEVLLRAG--VSRDARTKVDRTPLHMAASEGHANIVEVLLKHGAD---VNAKDMLKMTAL  104 (153)
T ss_dssp             CCTTCCCHHHHHHHHTCHHHHHHHHTTT--CCTTCCCTTCCCHHHHHHHHTCHHHHHHHHTTTCC---TTCCCTTSCCHH
T ss_pred             cccCCCcccccccccccccccccccccc--ccccccccccccccccccccccceeeecccccCCc---cccccccCchHH
Confidence            4678999999999999999999988875  34445566778999999999999999999988877   667789999999


Q ss_pred             HHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 031838           86 HSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (152)
Q Consensus        86 ~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~L  133 (152)
                      |+|+..|+.+++++|++.|++++.+|..|.|||++|+..|+.+++++|
T Consensus       105 ~~A~~~g~~~iv~~ll~~gad~~~~d~~g~Tpl~~A~~~g~~eiv~lL  152 (153)
T d1awcb_         105 HWATEHNHQEVVELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEIL  152 (153)
T ss_dssp             HHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             HhhhhcchhheeeeccccccCCcccCCCCCCHHHHHHHcCCHHHHHhC
Confidence            999999999999999999999999999999999999999999999876

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.91  E-value=6.1e-27  Score=157.72  Aligned_cols=139  Identities=16%  Similarity=0.169  Sum_probs=111.4

Q ss_pred             cCCCCCChHHHHHHHhCCHHHHHH---HHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccC--C
Q 031838            5 IDQTIKDKDLFKAAETGDSSTFKS---LSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVD--E   79 (152)
Q Consensus         5 ~~~~~~~~~l~~a~~~~~~~~~~~---ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~--~   79 (152)
                      .++..|.|+|+.|+..|+.+.++.   |++.+  ..++.++..|+||||+||..|+.+++++|++.+++   .+..+  .
T Consensus        85 ~~~~~~~t~L~~Aa~~g~~~~~~~~~~L~~~~--~~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~---~~~~~~~~  159 (346)
T d2ajaa1          85 KKGIKSEVICFVAAITGCSSALDTLCLLLTSD--EIVKVIQAENYQAFRLAAENGHLHVLNRLCELAPT---EIMAMIQA  159 (346)
T ss_dssp             HHTCCHHHHHHHHHHHCCHHHHHHHTTC--CC--SSCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTT---THHHHHSH
T ss_pred             hccCCCCcHHHHHHHhCCHHHHHHHHHHHhCC--CcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCC---cccccccc
Confidence            345567899999999999888776   45554  78889999999999999999999999999999887   33333  4


Q ss_pred             CCChhhHHHHhcCCHHHHHHHHHcCCCCc---ccCCCCCcHHHHHHHcCCHHHHHHHHhcCCCCCCcccccc
Q 031838           80 EGWAPIHSAASIGNVTIVEMLLSKGADVN---LKNDGGRTALHYAASKGWLKIVELLISRGAKINSKDKACN  148 (152)
Q Consensus        80 ~~~t~l~~a~~~~~~~~~~~l~~~~~~~~---~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~~~~~~~~~~  148 (152)
                      .|.||||+|+..|+.+++++|++.|....   ..+.++.+|++.|+..|+.+++++|++.|++++..+..+.
T Consensus       160 ~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~  231 (346)
T d2ajaa1         160 ENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEF  231 (346)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTT
T ss_pred             CCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCCcchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHH
Confidence            58999999999999999999999987653   3345567888899999999999999999987655444333

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.90  E-value=3.4e-23  Score=131.62  Aligned_cols=130  Identities=23%  Similarity=0.312  Sum_probs=115.1

Q ss_pred             cCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCC
Q 031838            3 MDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGW   82 (152)
Q Consensus         3 ~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~   82 (152)
                      ....+..+.++++.++..++.+.++.|+..+  .....++..|+||||+|+..++.+++++|+..+...  ++.++..|.
T Consensus        98 ~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~--~~~~~~~~~g~t~l~~a~~~~~~~~~~~Ll~~~~~~--in~~d~~g~  173 (229)
T d1ixva_          98 LNKITNQGVTCLHLAVGKKWFEVSQFLIENG--ASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSA--VNWQDKQGW  173 (229)
T ss_dssp             TTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT--CCSCCCCTTSCCHHHHHHHHTCHHHHHHHHTTTCCC--SCCCCTTSC
T ss_pred             ccccccccccccccccccchhhhhhhhhhhc--ccccccCCCCCCccchhhhccccccccccccccccc--ccccccccC
Confidence            3445566789999999999999999999987  566778899999999999999999999999876432  677889999


Q ss_pred             hhhHHHHhcCCHHHHHHHHHc-CCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031838           83 APIHSAASIGNVTIVEMLLSK-GADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus        83 t~l~~a~~~~~~~~~~~l~~~-~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      ||||+|+..++.+++++|++. |++++.+|..|.|||++|+.   .+++++|+++|+|
T Consensus       174 TpLh~A~~~~~~~~v~~Ll~~~gad~~~~d~~g~t~l~~A~~---~~~~~~Ll~~g~d  228 (229)
T d1ixva_         174 TPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDVALN---EQVKKFFLNNVVD  228 (229)
T ss_dssp             CHHHHHHHTTCHHHHHHHHHHHCCCSCCCCTTSCCTGGGCSC---HHHHHHHHHHCCC
T ss_pred             CchhhhcccccHHHHHHHHHhcCCCCCCcCCCCCCHHHHHhh---HHHHHHHHHcCCC
Confidence            999999999999999999964 99999999999999999974   5899999999987

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=99.89  E-value=1.5e-23  Score=136.61  Aligned_cols=147  Identities=20%  Similarity=0.234  Sum_probs=121.2

Q ss_pred             cCcCC-CCCChHHHHHHHhCCHHHHHHHHHhhc------ccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccc
Q 031838            3 MDIDQ-TIKDKDLFKAAETGDSSTFKSLSKQQL------LKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVN   75 (152)
Q Consensus         3 ~~~~~-~~~~~~l~~a~~~~~~~~~~~ll~~~~------~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~   75 (152)
                      ++..+ ..|.||||+|+..|+.+.++.|+....      +.+++.+|..|.||||+|+..|+.+++++|+++|++   ++
T Consensus        25 ~n~~~~~~g~T~Lh~A~~~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~g~~~iv~~Ll~~Gad---~n  101 (277)
T d2fo1e1          25 VNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKAGAD---PT  101 (277)
T ss_dssp             TTTCCCSSCCCHHHHHHCTTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHHTCHHHHHHHHHTTCC---SC
T ss_pred             CCcCCCCCCccHHHHHHHcCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeeccccccccccccccccccccc---cc
Confidence            33444 359999999999999999988865431      357889999999999999999999999999999888   67


Q ss_pred             ccCCCCChhhHHHHhcCCHHHHHHHHHcCC---C--------------------------------------------Cc
Q 031838           76 AVDEEGWAPIHSAASIGNVTIVEMLLSKGA---D--------------------------------------------VN  108 (152)
Q Consensus        76 ~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~---~--------------------------------------------~~  108 (152)
                      .++..|.|+++.|+..++..+..++...+.   .                                            .+
T Consensus       102 ~~~~~g~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (277)
T d2fo1e1         102 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKD  181 (277)
T ss_dssp             CCCTTCCCHHHHHHHTTCHHHHHHHTTSHHHHHTTSCCCTTSCCHHHHHHHSCSTTHHHHHHHHHHHTCCSSCCSGGGTS
T ss_pred             cccccccccccchhhhcchhhhhhhhhcccccccccccccccchhHHHHHhccccccccccccccccccccccccccccc
Confidence            778899999999999999888877755310   0                                            12


Q ss_pred             ccCCCCCcHHHHHHHcCCHHHHHHH-HhcCCCCCCccccccccCC
Q 031838          109 LKNDGGRTALHYAASKGWLKIVELL-ISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       109 ~~~~~~~~pl~~a~~~~~~~~~~~L-l~~g~~~~~~~~~~~t~l~  152 (152)
                      ..+..|.||+++++..++.++++++ ...+.+.+.++..|+||||
T Consensus       182 ~~~~~g~t~L~~~~~~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~  226 (277)
T d2fo1e1         182 SEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIM  226 (277)
T ss_dssp             SSSCCCCCTHHHHHSSCCHHHHHHHHHHSCCCTTCCCTTCCCHHH
T ss_pred             ccccCCCCccccccccccccccccccccccccccccCCCCCCHHH
Confidence            2345688999999999999999875 4678999999999999986

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-22  Score=126.75  Aligned_cols=136  Identities=24%  Similarity=0.254  Sum_probs=117.0

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcc----cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCcccccc
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL----KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAV   77 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~----~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~   77 (152)
                      |++..+..|.++|+.|+..++.+.++.++..+..    .........|.||++.|+..++.+++.+++..+...  ....
T Consensus        64 d~~~~d~~g~t~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~--~~~~  141 (221)
T d1iknd_          64 DPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLVSLGADV--NAQE  141 (221)
T ss_dssp             CSCCCCTTCCCHHHHHHHHTCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHHHTTCHHHHHHHHHHTCCT--TCCC
T ss_pred             cccccccccccccccccccccccccchhhhhcccccccccccccccccchhhhHHhhcCChhheeeecccCccc--cccc
Confidence            5677788899999999999999999999886421    223345556899999999999999999999887763  2233


Q ss_pred             CCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHHHhcCCC
Q 031838           78 DEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELLISRGAK  139 (152)
Q Consensus        78 ~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~Ll~~g~~  139 (152)
                      +..|.||||+|+..|+.+++++|+++|++++.+|..|.|||++|+..++.+++++|++.+.+
T Consensus       142 ~~~G~T~L~~A~~~g~~~~v~~Ll~~gad~~~~~~~G~tpl~~A~~~~~~~~~~~l~~~~~~  203 (221)
T d1iknd_         142 PCNGRTALHLAVDLQNPDLVSLLLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLE  203 (221)
T ss_dssp             TTTCCCHHHHHHHTTCHHHHHHHHTTTCCSCCCCTTCCCGGGGCTTSSCHHHHHHHHTTSCG
T ss_pred             ccCCCCccccccccccHHHHHHHHhcCCcccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCc
Confidence            46799999999999999999999999999999999999999999999999999999988644

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.87  E-value=1.4e-21  Score=117.24  Aligned_cols=106  Identities=17%  Similarity=0.164  Sum_probs=90.5

Q ss_pred             hHHHHHHHcCCHHHHHHHHhcCCCCcc---ccccCCCCChhhHHHHhc---CCHHHHHHHHHcCCCCcccCCCCCcHHHH
Q 031838           47 TLLHVAASCGHPEVVEILLSVDESANV---VNAVDEEGWAPIHSAASI---GNVTIVEMLLSKGADVNLKNDGGRTALHY  120 (152)
Q Consensus        47 t~l~~a~~~~~~~~~~~ll~~~~~~~~---~~~~~~~~~t~l~~a~~~---~~~~~~~~l~~~~~~~~~~~~~~~~pl~~  120 (152)
                      ..|..|++.+....+..++..+.+...   ....+..|.||||+|+..   +..+++++|++.|++++.+|..|.||||+
T Consensus         8 ~~L~~Av~~~dl~~l~~~~~~g~d~~~~~~~~~~~~~g~t~Lh~A~~~~~~~~~~iv~~Ll~~gadin~~d~~g~TpLh~   87 (154)
T d1dcqa1           8 HSLCEAVKTRDIFGLLQAYADGVDLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHY   87 (154)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTTCCTTSBCCCSSCSSTTCBHHHHHHHHCCTTTHHHHHHHHHHCSCTTCCCTTCCCHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHcCCCcCCCCCcccCCCCCCchHHHHHHhcCCCCHHHHHHHHHcCCChhhhhhhhcccccc
Confidence            346678888998888888776654221   222356789999999974   67899999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHhcCCCCCCccccccccCC
Q 031838          121 AASKGWLKIVELLISRGAKINSKDKACNFLYQ  152 (152)
Q Consensus       121 a~~~~~~~~~~~Ll~~g~~~~~~~~~~~t~l~  152 (152)
                      |+..|+.+++++|+++|++++.+|..|+||||
T Consensus        88 A~~~~~~~~v~~Ll~~gad~~~~d~~g~tpL~  119 (154)
T d1dcqa1          88 CCLTDNAECLKLLLRGKASIEIANESGETPLD  119 (154)
T ss_dssp             HHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHH
T ss_pred             ccccccccccccccccCccccccCCCCCCHHH
Confidence            99999999999999999999999999999986

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.86  E-value=8.8e-21  Score=118.80  Aligned_cols=120  Identities=24%  Similarity=0.263  Sum_probs=105.2

Q ss_pred             CCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHH
Q 031838            9 IKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSA   88 (152)
Q Consensus         9 ~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a   88 (152)
                      .+.+..+.+.........+.|...+  ..++..+..|.||+++++..+...+++.++..+.+   .+..|..|.||||+|
T Consensus        89 ~~~~~~~~~~~~~~~~~~~~L~~~~--~~~~~~~~~~~t~l~~~~~~~~~~~~~~l~~~~~~---~~~~d~~g~TpL~~A  163 (209)
T d1ot8a_          89 DGTTPLILAARLAIEGMVEDLITAD--ADINAADNSGKTALHWAAAVNNTEAVNILLMHHAN---RDAQDDKDETPLFLA  163 (209)
T ss_dssp             TCCCHHHHHHHTTCTTHHHHHHHTT--CCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHTTCC---TTCCCTTCCCHHHHH
T ss_pred             cccccccccccccchhhhhhhhhhc--ccccccCCCCCCcchhhcccCcceeeeeecccccc---ccccccccccccchh
Confidence            4556666666666777777776655  56677888899999999999999999999998877   677788999999999


Q ss_pred             HhcCCHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHHHH
Q 031838           89 ASIGNVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVELL  133 (152)
Q Consensus        89 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~~L  133 (152)
                      +..|+.+++++|++.|++++.+|..|.|||++|+..|+.+++++|
T Consensus       164 ~~~g~~~~v~~Ll~~gad~n~~d~~g~Tpl~~A~~~~~~~iv~lL  208 (209)
T d1ot8a_         164 AREGSYEASKALLDNFANREITDHMDRLPRDVASERLHHDIVRLL  208 (209)
T ss_dssp             HHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHH
T ss_pred             ccccHHHHHHHHHHCCCCCCCcCCCCCCHHHHHHHcCCHHHHhhc
Confidence            999999999999999999999999999999999999999999976

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=99.86  E-value=1.6e-24  Score=145.86  Aligned_cols=151  Identities=17%  Similarity=0.140  Sum_probs=109.9

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcccccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCC
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEG   81 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~   81 (152)
                      +++..+..|.||||.|++.|+.++|++|++.+........+..|.||||+|+..|+.+++++|++.+......+..+..+
T Consensus       118 ~in~~~~~g~taL~~Aa~~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~~g~~~iv~~Ll~~~~~~~~~~~~~~~~  197 (346)
T d2ajaa1         118 IVKVIQAENYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENY  197 (346)
T ss_dssp             SCC--CHHHHHHHHHHHHTTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHHTTCHHHHHHHHHSCGGGHHHHHHHHHH
T ss_pred             cccccCCCCCCHHHHHHHCCCHHHHHHHHHcCCCccccccccCCCChhHHHHHHhhHHHHHHHHHcCCcccccccccCCC
Confidence            46667778899999999999999999999987433333334568999999999999999999999876543334444556


Q ss_pred             ChhhHHHHhcCCHHHHHHHHHcCCCCccc---------------------------------CCC---------------
Q 031838           82 WAPIHSAASIGNVTIVEMLLSKGADVNLK---------------------------------NDG---------------  113 (152)
Q Consensus        82 ~t~l~~a~~~~~~~~~~~l~~~~~~~~~~---------------------------------~~~---------------  113 (152)
                      .|+++.|+..|+.+++++|++.|++++..                                 ...               
T Consensus       198 ~t~l~~A~~~g~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~  277 (346)
T d2ajaa1         198 YAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGF  277 (346)
T ss_dssp             HHHHHHHSTTCCHHHHHHHTTSHHHHHHHHHCTTTTTTTTHHHHHHHHHHHHHHHHTTTTTTSSSSCCCCSSHHHHHHHH
T ss_pred             cchhhHHhhcCHHHHHHHHHhCCCCcchHHHHHHHcCcHhhhHHHHHhhccchHHHHHHHHhcccccHhHHhcccccccc
Confidence            78888899999999999999876432211                                 001               


Q ss_pred             -CCcHHHHHHHcCCHHHHHHHHhcCCC-----CCCccccccccCC
Q 031838          114 -GRTALHYAASKGWLKIVELLISRGAK-----INSKDKACNFLYQ  152 (152)
Q Consensus       114 -~~~pl~~a~~~~~~~~~~~Ll~~g~~-----~~~~~~~~~t~l~  152 (152)
                       +.++++.+...+..+++++|++.+..     ....+..|+||||
T Consensus       278 ~~~~~l~~a~~~~~ld~v~~Ll~~~~~~~~~~~~~~~~~g~T~Lh  322 (346)
T d2ajaa1         278 YMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLR  322 (346)
T ss_dssp             HHHHHHHHHCCGGGHHHHHHHHTSTTTGGGSSCCSSTTCCCHHHH
T ss_pred             hhhhHHHHHhcCChHHHHHHHHhCcChhhhcccccCCCCCCcHHH
Confidence             12456666667778889999887654     3334456888876

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.86  E-value=1.4e-21  Score=122.89  Aligned_cols=127  Identities=27%  Similarity=0.286  Sum_probs=108.7

Q ss_pred             CcCcCCCCCChHHHHHHHhCCHHHHHHHHHhhcc----------------------------------------------
Q 031838            2 DMDIDQTIKDKDLFKAAETGDSSTFKSLSKQQLL----------------------------------------------   35 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~~~~~~ll~~~~~----------------------------------------------   35 (152)
                      |++..+..|.|||+.|+..|+.++++.|++.+..                                              
T Consensus        32 ~in~~d~~g~TpL~~A~~~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (228)
T d1k1aa_          32 ELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGL  111 (228)
T ss_dssp             CSCCCCTTSCCHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSC
T ss_pred             CCCccCCCCCccceehhcccccccccccccccccccccccccccccccccccccccchhhhhhccccccccccccccccc
Confidence            6778888999999999999999999999876520                                              


Q ss_pred             -----------------------cccccCCCCCchHHHHHHHcCCHHHHHHHHhcCCCCccccccCCCCChhhHHHHhcC
Q 031838           36 -----------------------KSLSLRNDDDRTLLHVAASCGHPEVVEILLSVDESANVVNAVDEEGWAPIHSAASIG   92 (152)
Q Consensus        36 -----------------------~~~~~~~~~g~t~l~~a~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~t~l~~a~~~~   92 (152)
                                             .........+.++++.|+..+...+++.++..+..   .+.++..|.||||+|+..|
T Consensus       112 ~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~~~~~~~~~~~---~~~~d~~g~t~L~~A~~~g  188 (228)
T d1k1aa_         112 TALHVAVNTECQETVQLLLERGADIDAVDIKSGRSPLIHAVENNSLSMVQLLLQHGAN---VNAQMYSGSSALHSASGRG  188 (228)
T ss_dssp             CHHHHHHHHTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC---TTCBCTTSCBHHHHHHHHT
T ss_pred             cccccccccccchhhhhhhccccccccccccchhhHHHHHHHhhhhhhhhhhhhhccc---cccccccCcchHHHHHHcC
Confidence                                   00112334578899999999999999999988766   6677889999999999999


Q ss_pred             CHHHHHHHHHcCCCCcccCCCCCcHHHHHHHcCCHHHHH
Q 031838           93 NVTIVEMLLSKGADVNLKNDGGRTALHYAASKGWLKIVE  131 (152)
Q Consensus        93 ~~~~~~~l~~~~~~~~~~~~~~~~pl~~a~~~~~~~~~~  131 (152)
                      +.+++++|++.|++++.+|..|.|||++|+..++.++++
T Consensus       189 ~~~~v~~Ll~~Gad~n~~d~~G~TpL~~A~~~~~~divk  227 (228)
T d1k1aa_         189 LLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILR  227 (228)
T ss_dssp             CHHHHHHHHHTTCCTTCCCTTSCCTTTTCSSHHHHHHHT
T ss_pred             CHHHHHHHHHCCCCCCCCCCCCCCHHHHHHhCCCccccC
Confidence            999999999999999999999999999999999888864

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.75  E-value=8.5e-19  Score=115.60  Aligned_cols=120  Identities=25%  Similarity=0.355  Sum_probs=88.5

Q ss_pred             CcCcCCCCCChHHHHHHHhCCH---HHHHHHHHhhcccccccCCCCCchHHHHHHHcCCH----H--------HHHHHHh
Q 031838            2 DMDIDQTIKDKDLFKAAETGDS---STFKSLSKQQLLKSLSLRNDDDRTLLHVAASCGHP----E--------VVEILLS   66 (152)
Q Consensus         2 ~~~~~~~~~~~~l~~a~~~~~~---~~~~~ll~~~~~~~~~~~~~~g~t~l~~a~~~~~~----~--------~~~~ll~   66 (152)
                      |++..+..|.||||.|+..++.   ..+..+++.. ...+..++..|+||||.++..+..    .        ++.++..
T Consensus       132 d~~~~d~~G~TpL~~A~~~~~~~~~~~~~~ll~~l-~~~~~~~d~~g~t~lh~~~~~~~~~~~~~~~~~~~~~~~~~l~~  210 (301)
T d1sw6a_         132 NRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYL-YPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK  210 (301)
T ss_dssp             CTTBCCTTCCCHHHHHHHSSHHHHTTCHHHHHHHH-GGGGGEECTTCCCHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcCCcccccHHHHhhhcccchhhhhHHHHHHHH-hhhhhhcccccCCHHHHHHHHhCccccHHHHHHHHHHHHHHHHh
Confidence            6788899999999999987642   2223333332 134566788899999988765431    1        2233333


Q ss_pred             cCCCCc----------------------------------cccccCCCCChhhHHHHhcCCHHHHHHHHHcCCCCcccCC
Q 031838           67 VDESAN----------------------------------VVNAVDEEGWAPIHSAASIGNVTIVEMLLSKGADVNLKND  112 (152)
Q Consensus        67 ~~~~~~----------------------------------~~~~~~~~~~t~l~~a~~~~~~~~~~~l~~~~~~~~~~~~  112 (152)
                      .+....                                  .++.+|..|.||||+|+..|+.+++++|++.|++++.+|.
T Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~in~~D~~G~TpLh~A~~~g~~~iv~~Ll~~GAd~~~~n~  290 (301)
T d1sw6a_         211 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDALLDYGADPFIANK  290 (301)
T ss_dssp             GGGCCEEEC----------------CHHHHHCSHHHHHHHTTTCCCTTSCCHHHHHHHHCCHHHHHHHHHTTCCTTCCCT
T ss_pred             cCCcchhcccccccchhHHHHhcchHHHHHHHhhHHHHhcCccCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCCCCCCCC
Confidence            222110                                  0467789999999999999999999999999999999999


Q ss_pred             CCCcHHHHHH
Q 031838          113 GGRTALHYAA  122 (152)
Q Consensus       113 ~~~~pl~~a~  122 (152)
                      .|.|||++|+
T Consensus       291 ~G~Tpl~~A~  300 (301)
T d1sw6a_         291 SGLRPVDFGA  300 (301)
T ss_dssp             TSCCGGGGTC
T ss_pred             CCCCHHHHcC
Confidence            9999999985