Citrus Sinensis ID: 031870

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-
Protein Sequence
MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccccEEEccccccccccEEEEEEEEEcccccccccEEEEEEEEEEEEEccEEEEEEEEEEEEEEcccccccccccccccccccEEEEEEEEcccccccEEEEEEEEEEEccccEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHEHHHHHHHHHHcccccccHcccccccccccEEEEEEEEcccccccccEEEEEEEEEEEEEEcccEEEEEEEEEEEEEEccccccccccccccccccEEEEEEEEccccccccEEEEEEEEEcccccEEEEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
MNRQLLLLFTFYVLVSSIQaidftycgqydeenfplkvqqikiipdpvvtgkpaifnisavtdrsvsggkVMIEVRYFGIRVHsethdiceevscpieagnfvlshaetlpgytppgvyTLKMKmigkngyqlTCFSFKFKIGFGALVSES
Flexible Loop (DISEMBL)
MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNIsavtdrsvsggkVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
Low Complexity Region (SEG)
MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
Disordered region (IsUnstruct)
****LLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALV***
Disordered Region (DISOPRED)
*NRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGAL****
Disordered Region (DISEMBL)
MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
Disordered Region (DISPRO)
*NRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGA*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVSES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	151	2.2.26 [Sep-21-2011]
Q54SW1	145	Putative phosphatidylglyc	yes	no	0.907	0.944	0.265	7e-12
Q4X136	175	Phosphatidylglycerol/phos	no	no	0.781	0.674	0.294	2e-11
O94183	175	Phosphatidylglycerol/phos	yes	no	0.741	0.64	0.3	4e-10
Q9C0X9	188	Phosphatidylglycerol/phos	yes	no	0.728	0.585	0.32	5e-10
Q4P580	193	Phosphatidylglycerol/phos	N/A	no	0.814	0.637	0.276	2e-09
Q5A8A2	192	Phosphatidylglycerol/phos	N/A	no	0.675	0.531	0.287	5e-09
Q6BV42	196	Phosphatidylglycerol/phos	yes	no	0.675	0.520	0.305	1e-08
Q6CNE0	173	Phosphatidylglycerol/phos	yes	no	0.675	0.589	0.288	2e-08
Q54YD2	141	Putative phosphatidylglyc	no	no	0.774	0.829	0.243	3e-08
Q54SZ9	147	Putative phosphatidylglyc	no	no	0.907	0.931	0.255	3e-08

>sp|Q54SW1|Y2179_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 OS=Dictyostelium discoideum GN=DDB_G0282179 PE=3 SV=2

 Score = 69.3 bits (168), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 38/143 (26%), Positives = 72/143 (50%), Gaps = 6/143 (4%)

Query: 1   MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISA 60
           M + +LLL   ++L+  +    + YC       F  K+ ++ ++PDP + GK    ++  
Sbjct: 1   MIKTILLLLINFMLILIVNGDIWNYCDGNINPTF--KINKLTLLPDPPLVGKEVTISLEG 58

Query: 61  VTDRSVSGGKVMIEVRYF---GIRVHSETH-DICEEVSCPIEAGNFVLSHAETLPGYTPP 116
             +  ++ G  +  V +F   G R     H DIC+ +SCP+ AG F  S +  +P +TP 
Sbjct: 59  SLNEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPH 118

Query: 117 GVYTLKMKMIGKNGYQLTCFSFK 139
           G Y  ++ +  ++   +TC +F+
Sbjct: 119 GQYKGQLTLTDQSNRNVTCLTFQ 141

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.
Dictyostelium discoideum (taxid: 44689)

>sp|Q4X136|NPC2_ASPFU Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=npc2 PE=3 SV=2

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/129 (29%), Positives = 65/129 (50%), Gaps = 11/129 (8%)

Query: 23  FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISA-VTDRSVSGGKVMIEVRYFGIR 81
             YC   D     L+++ + ++P+P + G+    N S  + +R   G  V +EV+Y  I 
Sbjct: 47  LVYCS--DPSGNILQIESVDLVPNPPLPGQTLSINASGNLKERVEEGAYVALEVKYGLIT 104

Query: 82  VHSETHDICEEV-----SCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCF 136
           +  +T D+CE++      CP+E G   L+    LP + PPG Y +   +  K+G ++TC 
Sbjct: 105 LIKQTADLCEQIKNVDLECPLEKGEMTLTKQVDLPSHIPPGKYNVHADVYTKDGKKITCL 164

Query: 137 ---SFKFKI 142
                +FKI
Sbjct: 165 DAHDIEFKI 173

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|O94183|NPC2_ASPOR Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=pltp PE=1 SV=1

 Score = 63.9 bits (154), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 36/120 (30%), Positives = 60/120 (50%), Gaps = 8/120 (6%)

Query: 23  FTYCGQYDEENFPLKVQQIKIIPDPVVTGKP-AIFNISAVTDRSVSGGKVMIEVRYFGIR 81
             YC   D     L ++Q+ + P+P + GK  AI     + ++   G  V++EV+Y  I 
Sbjct: 47  LEYCN--DPSGDILDIKQVDLSPNPPLPGKTLAITASGTLREKIEDGAYVLLEVKYGLIT 104

Query: 82  VHSETHDICE-----EVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCF 136
           +  +T D+CE     E+ CP+  G+  L+    LP   PPG YT++  +   +G  +TC 
Sbjct: 105 LVRQTADLCEQLVNVELKCPLGPGDMTLTKQVDLPKQIPPGKYTVQADVFNSDGEHITCL 164

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q9C0X9|NPC2_SCHPO Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=npc2 PE=3 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 15/125 (12%)

Query: 24  TYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSV-----SGGKVMIEVRYF 78
           +YC  +D  +  + V  I +IP+P   GK    N++  T+ +V     +G  V I+V+Y 
Sbjct: 51  SYCADWDRGDDHVVVDYINLIPNPPAAGK----NLTIETEINVGTTVLNGSYVDIQVKYG 106

Query: 79  GIRVHSETHDICEE------VSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 132
            +R+ +E  DIC++      V CP+E G        +LP   PPG Y +       +G Q
Sbjct: 107 FVRIVNERLDICDKAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNADGEQ 166

Query: 133 LTCFS 137
           LTC S
Sbjct: 167 LTCVS 171

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q4P580|NPC2_USTMA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Ustilago maydis (strain 521 / FGSC 9021) GN=NPC2 PE=3 SV=1

 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 57/134 (42%), Gaps = 11/134 (8%)

Query: 19  QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYF 78
           Q   ++ CG  DE    + V+ I + PDP V G+             VS G     +   
Sbjct: 61  QGWQWSSCGTGDEV---VNVESIVVSPDPPVPGQNLTVRAKGTVKDEVSDGTFADVIVKL 117

Query: 79  G-IRVHSETHDICE-------EVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNG 130
           G IR+ +   D+CE       ++ CP+ AG + L H   LP   PPG + + +    ++G
Sbjct: 118 GLIRLLARRFDVCEQARESNADLQCPLSAGEYELEHTVALPREIPPGKFNVHITGENQDG 177

Query: 131 YQLTCFSFKFKIGF 144
             L C     + GF
Sbjct: 178 SNLLCLDLSIQFGF 191

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Ustilago maydis (strain 521 / FGSC 9021) (taxid: 237631)

>sp|Q5A8A2|NPC2_CANAL Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=NPC2 PE=3 SV=1

 Score = 60.1 bits (144), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 57/108 (52%), Gaps = 6/108 (5%)

Query: 36  LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVS-GGKVMIEVRYFGIRVHSETHDICEEV- 93
           L + ++ + P+P V G+   F      D+++  G  V +EVRY  I++  +T+D+CEE+ 
Sbjct: 77  LHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLIHQTYDLCEEIV 136

Query: 94  ----SCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFS 137
                CPI++G   ++    +P   PPG Y +  +   K+   +TC +
Sbjct: 137 KVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAYTKDDEYITCLT 184

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Candida albicans (strain SC5314 / ATCC MYA-2876) (taxid: 237561)

>sp|Q6BV42|NPC2_DEBHA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=NPC2 PE=3 SV=1

 Score = 58.5 bits (140), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 54/108 (50%), Gaps = 6/108 (5%)

Query: 36  LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGK-VMIEVRYFGIRVHSETHDICEEVS 94
           L +Q + I P+P + G+   F    V  + +  G  V ++VRY  I++  +T D+CEE++
Sbjct: 81  LNLQSVVIDPNPPLRGENLTFVAKGVLSQDIEDGAYVEVDVRYGFIKLLHQTFDLCEEIT 140

Query: 95  -----CPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFS 137
                CPI  G  V+     +P   PPG Y +  +   K+   +TC S
Sbjct: 141 KIDLECPISKGQQVIEKKVEIPAEVPPGKYIVSARAYTKDDIFITCLS 188

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6CNE0|NPC2_KLULA Phosphatidylglycerol/phosphatidylinositol transfer protein OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=NPC2 PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 57/111 (51%), Gaps = 9/111 (8%)

Query: 36  LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVS-GGKVMIEVRYFGIRVHSETHDICEEVS 94
           L V Q+ ++P+P   G+      + V   ++  G  + IEVR   I++ S+T+D+CE++ 
Sbjct: 55  LDVTQVNLVPNPPQRGENLTIAAAGVLQTTIEEGAYIDIEVRLGYIKLISQTYDLCEQLE 114

Query: 95  --------CPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFS 137
                   CPIE G + L+    +P   PPG Y++  +    +  Q+TC +
Sbjct: 115 ENDIDGLKCPIEEGVYELNKIVEIPSEVPPGKYSVIARAYNVDDEQITCLT 165

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) (taxid: 284590)

>sp|Q54YD2|Y8295_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0278295 OS=Dictyostelium discoideum GN=DDB_G0278295 PE=2 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 61/123 (49%), Gaps = 6/123 (4%)

Query: 23  FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRV 82
           ++ CG   ++    ++  + + P   V G+    + S + D +V+GG V ++V+Y  I +
Sbjct: 22  WSNCGTAADK---FQITNVVLDPPTPVKGQDITISASGILDETVTGGNVAVKVKYGFITL 78

Query: 83  HSETHDIC---EEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFK 139
            +E   IC   + ++CPI AG++  +  E +P   P G YT  + +  +N  ++ C    
Sbjct: 79  INENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGKYTGNVVITDQNNAEIACIDVD 138

Query: 140 FKI 142
             +
Sbjct: 139 INL 141

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Dictyostelium discoideum (taxid: 44689)

>sp|Q54SZ9|Y2107_DICDI Putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282107 OS=Dictyostelium discoideum GN=DDB_G0282107 PE=3 SV=1

 Score = 57.4 bits (137), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 12/149 (8%)

Query: 3   RQLLLLFTFYVLVSSIQAID------FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIF 56
           +Q LLLF F +L+  I A        +  CG+  +     +++ + I PDP V G+    
Sbjct: 2   KQKLLLFIFSILILLIAAEAKMFKDIWKSCGKSTDT---FQIKNVTISPDPPVRGQTVSI 58

Query: 57  NISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVS---CPIEAGNFVLSHAETLPGY 113
             S     ++SGG V I++++  I +  ET  IC   +   CPI+ G++  S    +P  
Sbjct: 59  YASGELKDTISGGDVNIQIKFGIITIIRETKPICSSDNPFPCPIQPGDYTHSVDIAIPDN 118

Query: 114 TPPGVYTLKMKMIGKNGYQLTCFSFKFKI 142
            P G Y+    +  +   ++ C +   ++
Sbjct: 119 APRGKYSGNFVLTDQANDEIACINVNMQL 147

Catalyzes the intermembrane transfer of phosphatidylglycerol and phosphatidylinositol.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
147804852	154	hypothetical protein VITISV_030670 [Viti	0.940	0.922	0.548	4e-40
225464822	154	PREDICTED: putative phosphatidylglycerol	0.940	0.922	0.541	8e-40
297833968	153	hypothetical protein ARALYDRAFT_478524 [	0.940	0.928	0.510	2e-37
351723665	154	uncharacterized protein LOC100306050 pre	0.920	0.902	0.476	7e-37
18399355	153	MD-2-related lipid recognition domain-co	0.940	0.928	0.496	8e-37
21554315	153	unknown [Arabidopsis thaliana]	0.940	0.928	0.496	8e-37
255566183	155	Phosphatidylglycerol/phosphatidylinosito	0.953	0.929	0.465	9e-36
224088120	152	predicted protein [Populus trichocarpa]	0.940	0.934	0.493	2e-35
297818868	152	hypothetical protein ARALYDRAFT_905501 [	0.841	0.835	0.561	3e-35
15229872	152	MD-2-related lipid recognition domain-co	0.874	0.868	0.548	6e-35

>gi|147804852|emb|CAN64691.1| hypothetical protein VITISV_030670 [Vitis vinifera]

 Score =  169 bits (428), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 79/144 (54%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 8   LFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVS 67
            F   +LV SIQA   +YC +  E  + +KVQ I+I PDP++ GKPA F ISA     +S
Sbjct: 13  FFAVCLLVPSIQAKSVSYCDKKGE--YAVKVQDIQISPDPIIPGKPATFTISASAGEXIS 70

Query: 68  GGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIG 127
           GGKV+IEV  FG+ VH+E+H++CEE SCPI  GNF LSH++ LPG+TPPG YTLKMKM  
Sbjct: 71  GGKVVIEVSLFGVHVHTESHNLCEETSCPISGGNFELSHSQMLPGFTPPGSYTLKMKMED 130

Query: 128 KNGYQLTCFSFKFKIGFGALVSES 151
           ++ +QLTC +F F IGFG+ V++S
Sbjct: 131 ESKHQLTCITFNFNIGFGSYVADS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464822|ref|XP_002270174.1| PREDICTED: putative phosphatidylglycerol/phosphatidylinositol transfer protein DDB_G0282179 [Vitis vinifera] gi|296084851|emb|CBI28260.3| unnamed protein product [Vitis vinifera]

 Score =  168 bits (425), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 104/144 (72%), Gaps = 2/144 (1%)

Query: 8   LFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVS 67
            F   +LV SIQA   +YC +  +  + +KVQ I+I PDP++ GKPA F ISA     +S
Sbjct: 13  FFAVCLLVPSIQAKSVSYCDKKGQ--YAVKVQDIQISPDPIIPGKPATFTISASAGEGIS 70

Query: 68  GGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIG 127
           GGKV+IEV  FG+ VH+E+H++CEE SCPI  GNF LSH++ LPG+TPPG YTLKMKM  
Sbjct: 71  GGKVVIEVSLFGVHVHTESHNLCEETSCPISGGNFELSHSQMLPGFTPPGSYTLKMKMED 130

Query: 128 KNGYQLTCFSFKFKIGFGALVSES 151
           ++ +QLTC +F F IGFG+ V++S
Sbjct: 131 ESKHQLTCITFNFNIGFGSYVADS 154

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833968|ref|XP_002884866.1| hypothetical protein ARALYDRAFT_478524 [Arabidopsis lyrata subsp. lyrata] gi|297330706|gb|EFH61125.1| hypothetical protein ARALYDRAFT_478524 [Arabidopsis lyrata subsp. lyrata]

 Score =  160 bits (404), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 74/145 (51%), Positives = 103/145 (71%), Gaps = 3/145 (2%)

Query: 7   LLFTFYVLVSSI-QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRS 65
           L  ++++LVS+I  A D  YC   + E + +KVQ + IIPDPV  G PA F+ISA TD  
Sbjct: 10  LAISYFLLVSTIVAATDVHYCD--NNEEYEVKVQGVDIIPDPVARGAPATFSISANTDTE 67

Query: 66  VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKM 125
           +S GK++IEV YFG  +HSETH++C+E SCP+  G+FV+ H++ LPGYTPPG Y+LKMKM
Sbjct: 68  ISSGKLVIEVSYFGWHIHSETHELCDETSCPVAVGDFVVEHSQVLPGYTPPGSYSLKMKM 127

Query: 126 IGKNGYQLTCFSFKFKIGFGALVSE 150
           +     +LTC  F F+IGF + V++
Sbjct: 128 LDGRKKELTCIKFSFEIGFLSSVAD 152

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723665|ref|NP_001236775.1| uncharacterized protein LOC100306050 precursor [Glycine max] gi|255627393|gb|ACU14041.1| unknown [Glycine max]

 Score =  158 bits (399), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 70/147 (47%), Positives = 106/147 (72%), Gaps = 8/147 (5%)

Query: 5   LLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDR 64
           L LL+ F        A D  YC +  + ++ ++V+ ++I PDP+  G+PA F+I+A T +
Sbjct: 16  LCLLYGFS------NATDIHYCDK--KADYDVEVKGVEISPDPIARGQPATFSIAATTGK 67

Query: 65  SVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMK 124
           ++SGGK++I+V YFG  +HSETHD+C E +CP+ AG+FV++H++ LPG+TPPG YTLKMK
Sbjct: 68  ALSGGKLVIDVSYFGWHIHSETHDLCGETTCPVSAGDFVIAHSQVLPGFTPPGSYTLKMK 127

Query: 125 MIGKNGYQLTCFSFKFKIGFGALVSES 151
           M   N ++LTC +F F IGFG+ V++S
Sbjct: 128 MFDGNKHELTCITFGFDIGFGSSVADS 154

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18399355|ref|NP_566400.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana] gi|6671934|gb|AAF23194.1|AC016795_7 unknown protein [Arabidopsis thaliana] gi|14334430|gb|AAK59413.1| unknown protein [Arabidopsis thaliana] gi|28393843|gb|AAO42329.1| unknown protein [Arabidopsis thaliana] gi|332641577|gb|AEE75098.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 102/145 (70%), Gaps = 3/145 (2%)

Query: 7   LLFTFYVLVSSI-QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRS 65
           L  ++++LVS+I  A D  YC   + E + +KVQ + I P P+  G+PA F ISA TD  
Sbjct: 10  LAISYFLLVSTIVAATDVHYCD--NNEEYEVKVQGVDITPYPIARGEPATFRISANTDTE 67

Query: 66  VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKM 125
           +S GK++IEV YFG  +HSETHD+C+E SCP+  G+F+++H++ LPGYTPPG Y+LKMKM
Sbjct: 68  ISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKM 127

Query: 126 IGKNGYQLTCFSFKFKIGFGALVSE 150
           +     +LTC  F F IGFG+ V++
Sbjct: 128 LDGRKKELTCIKFSFDIGFGSSVAD 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554315|gb|AAM63420.1| unknown [Arabidopsis thaliana]

 Score =  158 bits (399), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 72/145 (49%), Positives = 102/145 (70%), Gaps = 3/145 (2%)

Query: 7   LLFTFYVLVSSI-QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRS 65
           L  ++++LVS+I  A D  YC   + E + +KVQ + I P P+  G+PA F ISA TD  
Sbjct: 10  LAISYFLLVSTIVAATDVHYCD--NNEEYEVKVQGVDITPYPIARGEPATFRISANTDTK 67

Query: 66  VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKM 125
           +S GK++IEV YFG  +HSETHD+C+E SCP+  G+F+++H++ LPGYTPPG Y+LKMKM
Sbjct: 68  ISSGKLVIEVSYFGWHIHSETHDLCDETSCPVAIGDFLVAHSQVLPGYTPPGSYSLKMKM 127

Query: 126 IGKNGYQLTCFSFKFKIGFGALVSE 150
           +     +LTC  F F IGFG+ V++
Sbjct: 128 LDGRKKELTCIKFSFDIGFGSSVAD 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255566183|ref|XP_002524079.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis] gi|223536647|gb|EEF38289.1| Phosphatidylglycerol/phosphatidylinositol transfer protein precursor, putative [Ricinus communis]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/146 (46%), Positives = 104/146 (71%), Gaps = 2/146 (1%)

Query: 6   LLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRS 65
           + L +  ++V   +A D  YC +  + ++ +KV+ ++I P+PVV G+ A F+ISA T ++
Sbjct: 12  VFLLSLCLIVPFTRATDVRYCDK--KADYDVKVKGVEISPNPVVRGQQATFSISASTGKA 69

Query: 66  VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKM 125
           +SGGK++IEV YFG  +HSETHD+C+E SCP+  GNF++SH++ LPG+TPPG Y+L MKM
Sbjct: 70  ISGGKLIIEVSYFGWHIHSETHDLCDETSCPVSDGNFIVSHSQVLPGFTPPGSYSLTMKM 129

Query: 126 IGKNGYQLTCFSFKFKIGFGALVSES 151
                ++LTC +F F IGF + V +S
Sbjct: 130 YDGKKHELTCIAFDFSIGFASSVQDS 155

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088120|ref|XP_002308330.1| predicted protein [Populus trichocarpa] gi|118482629|gb|ABK93234.1| unknown [Populus trichocarpa] gi|222854306|gb|EEE91853.1| predicted protein [Populus trichocarpa]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/144 (49%), Positives = 99/144 (68%), Gaps = 2/144 (1%)

Query: 7   LLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSV 66
           LL +  +++  IQA  F YC   + +++ +KV  +KI P+PV  GKPA F ISA T  S+
Sbjct: 10  LLISLCLILPLIQASKFQYCD--NNKDYDVKVSGVKISPNPVKKGKPATFTISATTSESI 67

Query: 67  SGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMI 126
           + GK+ ++VRYFG  V+S+ HD+CEE  CP+ +GNFV+SH E LPG+TPPG Y+L MKMI
Sbjct: 68  TDGKMRVDVRYFGFPVYSQDHDLCEETPCPVTSGNFVVSHTEELPGFTPPGSYSLTMKMI 127

Query: 127 GKNGYQLTCFSFKFKIGFGALVSE 150
                +LTC SF F+IG  + VS+
Sbjct: 128 NGESRELTCISFGFRIGSASSVSD 151

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297818868|ref|XP_002877317.1| hypothetical protein ARALYDRAFT_905501 [Arabidopsis lyrata subsp. lyrata] gi|297323155|gb|EFH53576.1| hypothetical protein ARALYDRAFT_905501 [Arabidopsis lyrata subsp. lyrata]

 Score =  153 bits (386), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 92/130 (70%), Gaps = 3/130 (2%)

Query: 19  QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYF 78
            A  F+YC   D+   P+KV  +KI PDPVV+G+ A F I   T   +SGGKV+I V YF
Sbjct: 23  HATSFSYC---DKRLDPVKVTGVKISPDPVVSGEAATFKILGSTGEDISGGKVVIRVSYF 79

Query: 79  GIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSF 138
           GI VH+ETHD+C+E +CP+  G+FVLSH++TLP  TPPG YTLKM +  KNG +LTC SF
Sbjct: 80  GIPVHTETHDLCKETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCISF 139

Query: 139 KFKIGFGALV 148
           KFKI  G+ V
Sbjct: 140 KFKITIGSAV 149

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15229872|ref|NP_189996.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana] gi|7635455|emb|CAB88418.1| putative protein [Arabidopsis thaliana] gi|21593892|gb|AAM65859.1| unknown [Arabidopsis thaliana] gi|27765004|gb|AAO23623.1| At3g44100 [Arabidopsis thaliana] gi|110743398|dbj|BAE99585.1| hypothetical protein [Arabidopsis thaliana] gi|332644341|gb|AEE77862.1| MD-2-related lipid recognition domain-containing protein [Arabidopsis thaliana]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 74/135 (54%), Positives = 93/135 (68%), Gaps = 3/135 (2%)

Query: 17  SIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR 76
           ++ A  FTYC   D+   P+KV  +KI PDPVV+G  A F I   T   +SGGKV+I V 
Sbjct: 21  ALHATSFTYC---DKRLDPVKVTGVKISPDPVVSGAAATFKIFGSTGEDISGGKVVIRVL 77

Query: 77  YFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCF 136
           Y GI VH+ETHD+C+E +CP+  G+FVLSH++TLP  TPPG YTLKM +  KNG +LTC 
Sbjct: 78  YVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMTINDKNGGRLTCI 137

Query: 137 SFKFKIGFGALVSES 151
           SFKFKI  G+ V  S
Sbjct: 138 SFKFKITVGSAVFAS 152

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	151
TAIR|locus:2081368	152	AT3G44100 "AT3G44100" [Arabido	0.940	0.934	0.537	1.3e-36
TAIR|locus:2144078	153	AT5G06480 "AT5G06480" [Arabido	0.900	0.888	0.521	2.4e-35
DICTYBASE|DDB_G0282179	145	DDB_G0282179 "ML domain-contai	0.907	0.944	0.265	5.6e-13
DICTYBASE|DDB_G0278295	141	DDB_G0278295 "ML domain-contai	0.860	0.921	0.279	5.8e-11
POMBASE|SPAPB8E5.04c	188	SPAPB8E5.04c "Niemann-Pick dis	0.754	0.606	0.314	1.2e-10
CGD|CAL0003259	192	orf19.3226 [Candida albicans (	0.675	0.531	0.287	1.5e-10
UNIPROTKB|Q5A8A2	192	NPC2 "Phosphatidylglycerol/pho	0.675	0.531	0.287	1.5e-10
DICTYBASE|DDB_G0270454	151	DDB_G0270454 "ML domain-contai	0.913	0.913	0.195	1.4e-09
DICTYBASE|DDB_G0287185	151	DDB_G0287185 "ML domain-contai	0.913	0.913	0.205	2.2e-09
DICTYBASE|DDB_G0282107	147	DDB_G0282107 "putative phospho	0.907	0.931	0.268	2.9e-09

TAIR|locus:2081368 AT3G44100 "AT3G44100" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 79/147 (53%), Positives = 100/147 (68%)

Query:     5 LLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDR 64
             LLLL  F++   ++ A  FTYC   D+   P+KV  +KI PDPVV+G  A F I   T  
Sbjct:    11 LLLLSVFFL--PALHATSFTYC---DKRLDPVKVTGVKISPDPVVSGAAATFKIFGSTGE 65

Query:    65 SVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMK 124
              +SGGKV+I V Y GI VH+ETHD+C+E +CP+  G+FVLSH++TLP  TPPG YTLKM 
Sbjct:    66 DISGGKVVIRVLYVGIPVHTETHDLCDETACPVAPGSFVLSHSQTLPSITPPGTYTLKMT 125

Query:   125 MIGKNGYQLTCFSFKFKIGFGALVSES 151
             +  KNG +LTC SFKFKI  G+ V  S
Sbjct:   126 INDKNGGRLTCISFKFKITVGSAVFAS 152

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0005773 "vacuole" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2144078 AT5G06480 "AT5G06480" [Arabidopsis thaliana (taxid:3702)]

 Score = 382 (139.5 bits), Expect = 2.4e-35, P = 2.4e-35
 Identities = 72/138 (52%), Positives = 97/138 (70%)

Query:    13 VLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVM 72
             +LVS I AID  YC +  E  + +KV+++ I P+P+  G+PA F ISA T R +S GK++
Sbjct:    17 LLVSPIVAIDVHYCEENAE--YEVKVKEVDISPNPIAPGEPATFTISANTGREISFGKLV 74

Query:    73 IEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQ 132
             IEV YFG  VHSETHD+C E SCPI+ G+F+++H++ LPGYTPPG Y LKMKM+     +
Sbjct:    75 IEVSYFGWHVHSETHDLCTETSCPIQTGDFLVAHSQVLPGYTPPGSYLLKMKMLDAKKKE 134

Query:   133 LTCFSFKFKIGFGALVSE 150
             LTC  F F IG  A V++
Sbjct:   135 LTCIKFSFDIGLRASVAD 152

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0006661 "phosphatidylinositol biosynthetic process" evidence=RCA

DICTYBASE|DDB_G0282179 DDB_G0282179 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 171 (65.3 bits), Expect = 5.6e-13, P = 5.6e-13
 Identities = 38/143 (26%), Positives = 72/143 (50%)

Query:     1 MNRQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISA 60
             M + +LLL   ++L+  +    + YC       F  K+ ++ ++PDP + GK    ++  
Sbjct:     1 MIKTILLLLINFMLILIVNGDIWNYCDGNINPTF--KINKLTLLPDPPLVGKEVTISLEG 58

Query:    61 VTDRSVSGGKVMIEVRYF---GIRVHSETH-DICEEVSCPIEAGNFVLSHAETLPGYTPP 116
               +  ++ G  +  V +F   G R     H DIC+ +SCP+ AG F  S +  +P +TP 
Sbjct:    59 SLNEQITSGSSIFNVAFFINGGWRQLPTFHNDICKVLSCPVSAGPFTYSTSIKVPIFTPH 118

Query:   117 GVYTLKMKMIGKNGYQLTCFSFK 139
             G Y  ++ +  ++   +TC +F+
Sbjct:   119 GQYKGQLTLTDQSNRNVTCLTFQ 141

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0278295 DDB_G0278295 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 38/136 (27%), Positives = 68/136 (50%)

Query:     3 RQLLLLFTFYVLVSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVT 62
             R LL LF    LVS      ++ CG   ++    ++  + + P   V G+    + S + 
Sbjct:     2 RLLLALFFVLALVSPSFTQVWSNCGTAADK---FQITNVVLDPPTPVKGQDITISASGIL 58

Query:    63 DRSVSGGKVMIEVRYFGIRVHSETHDIC---EEVSCPIEAGNFVLSHAETLPGYTPPGVY 119
             D +V+GG V ++V+Y  I + +E   IC   + ++CPI AG++  +  E +P   P G Y
Sbjct:    59 DETVTGGNVAVKVKYGFITLINENVSICSSQDPLACPIAAGDYQKNMTEMIPSDAPSGKY 118

Query:   120 TLKMKMIGKNGYQLTC 135
             T  + +  +N  ++ C
Sbjct:   119 TGNVVITDQNNAEIAC 134

GO:0005615 "extracellular space" evidence=IDA

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

POMBASE|SPAPB8E5.04c SPAPB8E5.04c "Niemann-Pick disease type C2 protein hE1 homolog (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 149 (57.5 bits), Expect = 1.2e-10, P = 1.2e-10
 Identities = 38/121 (31%), Positives = 57/121 (47%)

Query:    24 TYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSV-SGGKVMIEVRYFGIRV 82
             +YC  +D  +  + V  I +IP+P   GK            +V +G  V I+V+Y  +R+
Sbjct:    51 SYCADWDRGDDHVVVDYINLIPNPPAAGKNLTIETEINVGTTVLNGSYVDIQVKYGFVRI 110

Query:    83 HSETHDICEE------VSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCF 136
              +E  DIC++      V CP+E G        +LP   PPG Y +       +G QLTC 
Sbjct:   111 VNERLDICDKAYELAAVECPVEPGIITKQATISLPWAIPPGRYHVLATAYNADGEQLTCV 170

Query:   137 S 137
             S
Sbjct:   171 S 171

GO:0000328 "fungal-type vacuole lumen" evidence=ISO

GO:0003674 "molecular_function" evidence=ND

GO:0032366 "intracellular sterol transport" evidence=ISO

CGD|CAL0003259 orf19.3226 [Candida albicans (taxid:5476)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/108 (28%), Positives = 57/108 (52%)

Query:    36 LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVS-GGKVMIEVRYFGIRVHSETHDICEEV- 93
             L + ++ + P+P V G+   F      D+++  G  V +EVRY  I++  +T+D+CEE+ 
Sbjct:    77 LHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLIHQTYDLCEEIV 136

Query:    94 ----SCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFS 137
                  CPI++G   ++    +P   PPG Y +  +   K+   +TC +
Sbjct:   137 KVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAYTKDDEYITCLT 184

GO:0003674 "molecular_function" evidence=ND

GO:0000328 "fungal-type vacuole lumen" evidence=IEA

GO:0032366 "intracellular sterol transport" evidence=IEA

UNIPROTKB|Q5A8A2 NPC2 "Phosphatidylglycerol/phosphatidylinositol transfer protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 31/108 (28%), Positives = 57/108 (52%)

Query:    36 LKVQQIKIIPDPVVTGKPAIFNISAVTDRSVS-GGKVMIEVRYFGIRVHSETHDICEEV- 93
             L + ++ + P+P V G+   F      D+++  G  V +EVRY  I++  +T+D+CEE+ 
Sbjct:    77 LHLDEVIVTPNPPVAGQNLTFTAVGTLDKTIEEGAYVEVEVRYGFIKLIHQTYDLCEEIV 136

Query:    94 ----SCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFS 137
                  CPI++G   ++    +P   PPG Y +  +   K+   +TC +
Sbjct:   137 KVDLQCPIKSGKQTITKNVEIPEEVPPGKYLVVARAYTKDDEYITCLT 184

GO:0003674 "molecular_function" evidence=ND

DICTYBASE|DDB_G0270454 DDB_G0270454 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 29/148 (19%), Positives = 74/148 (50%)

Query:     2 NRQLLLLFTFYVL----VSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFN 57
             ++  ++  TF+++    V  I+++++  C    + N   K+++++  P+  + G+  I +
Sbjct:     4 SKNQIVYITFFIIILIVVKPIESVEWNDCS---DPNDSFKIEKLEFSPEQPIAGQDLIIS 60

Query:    58 ISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE--VSCPIEAGNFVLSHA-ETLPGYT 114
             IS   ++ ++ G+  + + +  I +     ++C    V+CPI+ GN+  +   + +P   
Sbjct:    61 ISGYLNKEITNGEAYLSITFDRIPIIKLKGNLCNGMGVTCPIQQGNYSTTTINQEIPENA 120

Query:   115 PPGVYTLKMKMIGKNGYQLTCFSFKFKI 142
             P G Y +   +  ++  Q+TC   +  I
Sbjct:   121 PQGYYYVNFVLYDQDDLQITCIDVQMNI 148

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0287185 DDB_G0287185 "ML domain-containing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 137 (53.3 bits), Expect = 2.2e-09, P = 2.2e-09
 Identities = 30/146 (20%), Positives = 76/146 (52%)

Query:     2 NRQLLLLFTFYVL--VSSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNIS 59
             N+ + ++F F +L  V  I++++++ C     ++F  K+++++  P+  + G+  I ++S
Sbjct:     6 NQIVYVIFFFIILIVVKPIESVEWSDCSD-PSDSF--KIEKLEFSPEQPIAGQDLIISVS 62

Query:    60 AVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE--VSCPIEAGNFVLSHA-ETLPGYTPP 116
                ++ ++ G+  + + +  I +     ++C+   V+CPI  GN+  +   + +P   P 
Sbjct:    63 GYLNKEITKGEAYLAITFDRIPILKLKGNLCDGMGVTCPIPQGNYSTTTINQEIPENVPQ 122

Query:   117 GVYTLKMKMIGKNGYQLTCFSFKFKI 142
             G Y +   +  ++  Q+TC   +  I
Sbjct:   123 GYYYVNFVLYDQDDLQITCVDVQMNI 148

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

DICTYBASE|DDB_G0282107 DDB_G0282107 "putative phospholipid transfer protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 136 (52.9 bits), Expect = 2.9e-09, P = 2.9e-09
 Identities = 40/149 (26%), Positives = 69/149 (46%)

Query:     3 RQLLLLFTFYVLVSSIQAIDFTY------CGQYDEENFPLKVQQIKIIPDPVVTGKPAIF 56
             +Q LLLF F +L+  I A    +      CG+   + F +K   + I PDP V G+    
Sbjct:     2 KQKLLLFIFSILILLIAAEAKMFKDIWKSCGK-STDTFQIK--NVTISPDPPVRGQTVSI 58

Query:    57 NISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVS---CPIEAGNFVLSHAETLPGY 113
               S     ++SGG V I++++  I +  ET  IC   +   CPI+ G++  S    +P  
Sbjct:    59 YASGELKDTISGGDVNIQIKFGIITIIRETKPICSSDNPFPCPIQPGDYTHSVDIAIPDN 118

Query:   114 TPPGVYTLKMKMIGKNGYQLTCFSFKFKI 142
              P G Y+    +  +   ++ C +   ++
Sbjct:   119 APRGKYSGNFVLTDQANDEIACINVNMQL 147

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0006869 "lipid transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00037271001 SubName- Full=Chromosome undetermined scaffold_87, whole genome shotgun sequence; (154 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	151
cd00917	122	cd00917, PG-PI_TP, The phosphatidylinositol/phosph	3e-35
smart00737	119	smart00737, ML, Domain involved in innate immunity	4e-26
pfam02221	132	pfam02221, E1_DerP2_DerF2, ML domain	2e-24

>gnl|CDD|238459 cd00917, PG-PI_TP, The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

 Score =  118 bits (297), Expect = 3e-35
 Identities = 44/124 (35%), Positives = 68/124 (54%), Gaps = 8/124 (6%)

Query: 23  FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIR 81
           F YC +  E+   +KV  ++I P+P   G+      S    + +  G  V++EV+Y  IR
Sbjct: 1   FEYCDKGGED--IVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIR 58

Query: 82  VHSETHDICEE-----VSCPIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCF 136
           + SET+D+C+E     +SCPIE G+  L+    LPG  PPG YT+  +   K+  ++TC 
Sbjct: 59  LLSETYDLCDETKNVDLSCPIEPGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCL 118

Query: 137 SFKF 140
           SF  
Sbjct: 119 SFSV 122

These proteins belong to the ML domain family. Length = 122

>gnl|CDD|214796 smart00737, ML, Domain involved in innate immunity and lipid metabolism

 Score = 94.7 bits (236), Expect = 4e-26
 Identities = 41/123 (33%), Positives = 63/123 (51%), Gaps = 9/123 (7%)

Query: 23  FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFG--I 80
           F  CG     N P ++  + I P P V GK    +IS   +  +S  KV++ V+  G  +
Sbjct: 1   FKDCG----SNDPGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEV 56

Query: 81  RVHSETHDICEE--VSCPIEAGNFVLSHAE-TLPGYTPPGVYTLKMKMIGKNGYQLTCFS 137
            +  ET+D+C+     CPIE G  V      T+PG  PPG YT+K ++  ++G +L C +
Sbjct: 57  PIPGETYDLCKLTGSKCPIEKGETVNYTNSLTVPGIFPPGKYTVKWELTDEDGEELACIN 116

Query: 138 FKF 140
           F  
Sbjct: 117 FTV 119

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids. Length = 119

>gnl|CDD|216934 pfam02221, E1_DerP2_DerF2, ML domain

 Score = 91.3 bits (227), Expect = 2e-24
 Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 10/132 (7%)

Query: 20  AIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMI-----E 74
           A+ F  CG   E    + V   +I P P+V G     +     ++ ++    ++      
Sbjct: 2   AVPFRDCGGKPEPT-SVDVSGCEISPCPLVRGTNLTISADFTANQDITKLTAVVVATLLG 60

Query: 75  VRYFGIRVHSETHDICEE---VSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNG 130
           V+   I +  ET D C+    +SCP++ G     + +  +P   PPG YT++ ++   +G
Sbjct: 61  VKIPFITLPGETEDACKGLVGLSCPLKKGETVTYTLSVPIPKEYPPGKYTVEAELYDDDG 120

Query: 131 YQLTCFSFKFKI 142
             LTCF F  KI
Sbjct: 121 EVLTCFEFDVKI 132

ML domain - MD-2-related lipid recognition domain. This family consists of proteins from plants, animals and fungi, including dust mite allergen Der P 2. It has been implicate in lipid recognition, particularly in the recognition of pathogen related products. A mutation in Npc2 causes a rare form of Niemann-Pick type C2 disease. Length = 132

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	151
cd00917	122	PG-PI_TP The phosphatidylinositol/phosphatidylglyc	99.98
KOG4680	153	consensus Uncharacterized conserved protein, conta	99.97
cd00916	123	Npc2_like Niemann-Pick type C2 (Npc2) is a lysosom	99.97
cd00918	120	Der-p2_like Several group 2 allergen proteins belo	99.96
KOG4063	158	consensus Major epididymal secretory protein HE1 [	99.96
smart00737	118	ML Domain involved in innate immunity and lipid me	99.96
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	99.96
cd00912	127	ML The ML (MD-2-related lipid-recognition) domain	99.95
cd00915	130	MD-1_MD-2 MD-1 and MD-2 are cofactors required for	99.88
cd00258	162	GM2-AP GM2 activator protein (GM2-AP) is a non-enz	99.85
PF14558	141	TRP_N: ML-like domain	98.84
PF15418	132	DUF4625: Domain of unknown function (DUF4625)	97.62
smart00697	93	DM8 Repeats found in several Drosophila proteins.	96.71
PF14524	142	Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.	96.44
PF07705	101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	95.57
PF10633	78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	95.33
smart00675	164	DM11 Domains in hypothetical proteins in Drosophil	95.31
PF06477	81	DUF1091: Protein of unknown function (DUF1091); In	94.76
PF02115	200	Rho_GDI: RHO protein GDP dissociation inhibitor; I	94.34
PF04234	97	CopC: CopC domain; InterPro: IPR007348 CopC is a b	94.01
PRK10301	124	hypothetical protein; Provisional	92.48
TIGR02186	261	alph_Pro_TM conserved hypothetical protein. This f	90.37
PF09608	236	Alph_Pro_TM: Putative transmembrane protein (Alph_	89.06
PLN00044	596	multi-copper oxidase-related protein; Provisional	87.74
PF00339	149	Arrestin_N: Arrestin (or S-antigen), N-terminal do	87.73
KOG1263	563	consensus Multicopper oxidases [Secondary metaboli	86.79
KOG3205	200	consensus Rho GDP-dissociation inhibitor [Signal t	86.23
PF00868	118	Transglut_N: Transglutaminase family; InterPro: IP	84.96
cd00912	127	ML The ML (MD-2-related lipid-recognition) domain	84.84
PF13754	54	Big_3_4: Bacterial Ig-like domain (group 3)	84.44
PF07495	66	Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This regi	83.81
PF02221	134	E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The	82.95
smart00737	118	ML Domain involved in innate immunity and lipid me	82.46

>cd00917 PG-PI_TP The phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP) has been shown to bind phosphatidylglycerol and phosphatidylinositol, but the biological significance of this is still obscure

Probab=99.98  E-value=5.5e-31  Score=183.99  Aligned_cols=116  Identities=37%  Similarity=0.698  Sum_probs=108.5

Q ss_pred             eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcC-----CCC
Q 031870           23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEV-----SCP   96 (151)
Q Consensus        23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~-----~CP   96 (151)
                      |++|++  +..+.++|++++++|||++||++++|+++|++++++++| ++.+.+++++++++..+.|+|+..     +||
T Consensus         1 ~~~C~~--~~~~~~~i~~V~isP~p~~~G~~~ti~~~~~~~~~v~~g~~~~v~~~~~~i~~~~~~~DlC~~~~~~g~~CP   78 (122)
T cd00917           1 FEYCDK--GGEDIVKVTSVEISPNPPAAGQNLTIEASGSVGKEIEDGAYVVVEVKYGFIRLLSETYDLCDETKNVDLSCP   78 (122)
T ss_pred             CccCCC--CCCCeEEEEEEEEECCCcCCCCcEEEEEEEEECcCcCCCCEEEEEEEECCEEeecccCCcccccccCCCcCC
Confidence            899987  445899999999999999999999999999999999997 899999999999998889999963     899


Q ss_pred             CCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870           97 IEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF  140 (151)
Q Consensus        97 v~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~  140 (151)
                      +++|++.+..++.||+++|+|+|+++|+++|++++.++|++|++
T Consensus        79 i~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~Ci~~~~  122 (122)
T cd00917          79 IEPGDKFLTKLVDLPGEIPPGKYTVSARAYTKDDEEITCLSFSV  122 (122)
T ss_pred             cCCCcEEEEEEeeCCCCCCCceEEEEEEEECCCCCEEEEEEeeC
Confidence            99998779999999999999999999999999999999999975

These proteins belong to the ML domain family.

>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]

Probab=99.97  E-value=7.6e-31  Score=181.88  Aligned_cols=132  Identities=48%  Similarity=0.924  Sum_probs=124.9

Q ss_pred             hcccccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCC
Q 031870           16 SSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSC   95 (151)
Q Consensus        16 ~~~~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~C   95 (151)
                      +..++.++.+|..+  ..+.|+|+.++++|+|+.+|+++++++++...+++..|+..++++|+||++..++.|+|+.++|
T Consensus        20 ~i~~a~~~~yCd~~--d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~ntg~tIs~Gk~VIeV~y~gi~ihsethDLCdetsC   97 (153)
T KOG4680|consen   20 PINGATPVHYCDIN--DEYEVKVKEVNISPNPPARGENATFSISGNTGETISEGKYVIEVSYGGIRIHSETHDLCDETSC   97 (153)
T ss_pred             cccCCCcchhhhhc--ccceEEEEEEecCCCCCCCCCccEEEEecccccEeeCCeEEEEEEEeeEEEeeccccccccccC
Confidence            46778999999883  4579999999999999999999999999999999999997799999999999999999999999


Q ss_pred             CCCCCcEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEccccccc
Q 031870           96 PIEAGNFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFGALVS  149 (151)
Q Consensus        96 Pv~~G~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~~~~~  149 (151)
                      |+++|.|....++.+|...|+|+|.++++++|++|++++|++|.|+|.+..+|-
T Consensus        98 PVepG~f~~~hsq~LPg~tPPG~Y~lkm~~~d~~~~~LTCisfsf~i~~g~~v~  151 (153)
T KOG4680|consen   98 PVEPGDFLVAHSQVLPGYTPPGSYVLKMTAYDAKGKELTCISFSFDIGFGSSVA  151 (153)
T ss_pred             CcCcCceeeeeeEeccCcCCCceEEEEEEeecCCCCEEEEEEEEEEeeccceec
Confidence            999999999999999999999999999999999999999999999999887764

>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes

Probab=99.97  E-value=1.1e-29  Score=177.69  Aligned_cols=118  Identities=20%  Similarity=0.361  Sum_probs=109.2

Q ss_pred             eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEccc--CCCCCCc--CCCCCC
Q 031870           23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE--THDICEE--VSCPIE   98 (151)
Q Consensus        23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~--~~d~C~~--~~CPv~   98 (151)
                      |++|+++.+....++|++|+..||+++||++++++++|+++++++++++++.+.++|+++|..  +.|+|+.  .+||++
T Consensus         1 ~~~Cg~~~~~~~~V~i~~C~~~PC~l~rG~~~~~~i~F~~~~~~~~~~~~v~~~~~gv~ip~~~~~~daC~~~~~~CPl~   80 (123)
T cd00916           1 FRDCGSSRPTPSEVRISGCATLPCKLKRGSTAKVSIDFTPNFDSTSLKTEVHAILLGVPVPFPLPNPDACKNLGTSCPLS   80 (123)
T ss_pred             CccCCCCCCceeEEEECCCCCCCCEEECCCEEEEEEEEEcCcccceeEEEEEEEECCEEecCCCCCCccccCCCCCCCCc
Confidence            689998555678999999999999999999999999999999999999999999999877654  7899987  899999


Q ss_pred             CC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870           99 AG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF  140 (151)
Q Consensus        99 ~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~  140 (151)
                      +| .|+|+++++|++.+|.++|+++|+|+|++++.++||++++
T Consensus        81 ~G~~~~y~~~~~v~~~~P~i~~~v~~~L~d~~~~~~~Cf~~~~  123 (123)
T cd00916          81 AGEDVTYTLSLPVLAPYPGISVTVEWELTDDDGQVLTCFQIPA  123 (123)
T ss_pred             CCcEEEEEEeeeccccCCCeEEEEEEEEEcCCCCEEEEEEeeC
Confidence            99 8999999999999999999999999998899999999974

Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.

>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family

Probab=99.96  E-value=4.9e-29  Score=173.32  Aligned_cols=117  Identities=23%  Similarity=0.376  Sum_probs=107.3

Q ss_pred             eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEc--ccCCCCCCcCCCCCCCC
Q 031870           23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVH--SETHDICEEVSCPIEAG  100 (151)
Q Consensus        23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~--~~~~d~C~~~~CPv~~G  100 (151)
                      |++|++  +....++|++|+..||.++||++++++++|++++++++.++++.++++|+++|  ..+.|+|+.+.||+++|
T Consensus         1 f~~Cg~--~~~~~V~V~~C~~~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G   78 (120)
T cd00918           1 FKDCGK--GEIKSLEVDGCSGDYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKG   78 (120)
T ss_pred             CeeCCC--CCcCEEEeCCCCCCCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCC
Confidence            689988  45789999999999999999999999999999999999999999999997664  44789998899999999


Q ss_pred             -cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 031870          101 -NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI  142 (151)
Q Consensus       101 -~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i  142 (151)
                       +|+|+++++|++.||..+++++|+|.|++| .++||+++.+|
T Consensus        79 ~~~~y~~~~~V~~~~P~v~~~V~~~L~d~~g-~~~Cf~~~~~~  120 (120)
T cd00918          79 QHYDIKYTWNVPAILPKIKAVVKAVLIGDHG-VLACGIVNGEV  120 (120)
T ss_pred             cEEEEEEeeeccccCCCeEEEEEEEEEcCCC-cEEEEEEcCcC
Confidence             899999999999999999999999999878 49999998764

They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.

>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]

Probab=99.96  E-value=2e-28  Score=172.42  Aligned_cols=144  Identities=19%  Similarity=0.317  Sum_probs=124.7

Q ss_pred             CcceehHHHHHHhhhhc----ccccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEE
Q 031870            1 MNRQLLLLFTFYVLVSS----IQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR   76 (151)
Q Consensus         1 m~~~~~ll~~~~l~~~~----~~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~   76 (151)
                      ||..++.+++++++++.    +.++.+++|+++++....|+|++|+.+||.++||++..|+++|.++++.+..+..++.+
T Consensus         1 m~ms~~~~v~l~alls~a~aq~~~t~~k~C~ss~g~~~~V~i~~C~t~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~   80 (158)
T KOG4063|consen    1 MMMSFLKTVILLALLSLAAAQAISTGVKQCGSSDGTPLEVKIDGCPTTPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGI   80 (158)
T ss_pred             CchHHHHHHHHHHHHHHhhhcccCcccccccCCCCcceEEEecCCCCCceEEecCCeEEEEEEEeeccchhhhhheeeee
Confidence            55455666666666553    33789999999888889999999999999999999999999999999999998788777


Q ss_pred             Ece-EEE--cccCCCCCCc------CCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           77 YFG-IRV--HSETHDICEE------VSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        77 ~~~-~~v--~~~~~d~C~~------~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      .+| +++  |....|+|..      ..||+.+| .|+|..+++|-..+|.+...++|+|.|++|+..+||.++++|+.
T Consensus        81 ~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~age~ytY~~slpI~~~yP~v~v~iew~L~D~d~~~~~Cf~ipakIk~  158 (158)
T KOG4063|consen   81 TLGSVPVPFPLPASDACVCGNLLHGVYCPLSAGEDYTYLNSLPITENYPEVSVIIEWQLQDQDNEKAVCFEIPAKIKK  158 (158)
T ss_pred             ecccEeecCCCCCCcccccccccccccCcccCCCceEEEEEeeccccCCceeEEEEEEEecCCCCeEEEEEEEeeecC
Confidence            776 655  5556788874      58999999 89999999999999999999999999999999999999999863

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=99.96  E-value=4.9e-28  Score=167.83  Aligned_cols=113  Identities=35%  Similarity=0.688  Sum_probs=103.9

Q ss_pred             eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceE--EEcccCCCCCCcC--CCCCC
Q 031870           23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGI--RVHSETHDICEEV--SCPIE   98 (151)
Q Consensus        23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~--~v~~~~~d~C~~~--~CPv~   98 (151)
                      |++|++  .   ...|.+++++|||+++|++++++++|+++++++++++++.++++|+  +++..+.|+|+..  .||++
T Consensus         1 ~~~C~~--~---~~~i~~v~v~Pc~~~~g~~~~i~i~f~~~~~~~~~~~~v~~~~~g~~ip~~~~~~d~C~~~~~~CPl~   75 (118)
T smart00737        1 FKDCGS--N---PGQISSVSISPCPPVRGKTLTISISFTLNEDISKLKVVVHVKIGGIEVPIPGETYDLCKLLGSKCPIE   75 (118)
T ss_pred             CccCCC--C---CceEEEEEecCCCCCCCCEEEEEEEEEEcccceEEEEEEEEEECCEEEeccCCCCCccccCCCCCCCC
Confidence            789987  2   5699999999999999999999999999999999999999999984  5666789999874  89999


Q ss_pred             CC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870           99 AG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF  140 (151)
Q Consensus        99 ~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~  140 (151)
                      +| .|+|+.++.||+.+|.|+|+++|+++|++++.++|+++++
T Consensus        76 ~G~~~~~~~~~~v~~~~P~~~~~v~~~l~d~~~~~i~C~~~~~  118 (118)
T smart00737       76 KGETVNYTNSLTVPGIFPPGKYTVKWELTDEDGEELACINFTV  118 (118)
T ss_pred             CCeeEEEEEeeEccccCCCeEEEEEEEEEcCCCCEEEEEEccC
Confidence            99 7899999999999999999999999999999999999874

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=99.96  E-value=9.6e-28  Score=169.14  Aligned_cols=121  Identities=32%  Similarity=0.677  Sum_probs=108.2

Q ss_pred             ccceeecCCCCCCCccEEEeEEEee-CCCCCCCCcEEEEEEE-EEceeecCeEEEEEEEEce-EEEccc----CCCCCCc
Q 031870           20 AIDFTYCGQYDEENFPLKVQQIKII-PDPVVTGKPAIFNISA-VTDRSVSGGKVMIEVRYFG-IRVHSE----THDICEE   92 (151)
Q Consensus        20 ~~~~~~C~~~~~~~~~v~I~~~~~~-Pc~~~~G~~~~i~~~~-~~~~~i~~~~~~v~~~~~~-~~v~~~----~~d~C~~   92 (151)
                      ++.|++|++  +....++|++++++ ||++++|++++++++| +++++.+.+++++.++++| +++|..    ..|+|+.
T Consensus         1 ~v~~~~C~~--~~~~~~~v~~v~i~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~~v~~~~~g~~~ip~~g~~~~~d~C~~   78 (134)
T PF02221_consen    1 AVNFKDCGD--GKDSPGTVTSVDISPPCPLKRGQPVTITIDFNTSKKDSDGLKVKVEAKVGGWIPIPFPGLCEYYDLCDN   78 (134)
T ss_dssp             EEEEEESSS--CTSSCECEEEEEEESSEEEETTSEEEEEEEEEECSSBBSSEEEEEEEEETTEEEEEEESSSCEEEEEGT
T ss_pred             CcEEEECCC--cccCCceeEEEEECCCCcccCCCEEEEEEEEEEccccccCCEEEEEEEECCcEEEccccccCccchhhh
Confidence            468999986  45578899999998 9999999999999999 7888888888999999998 777554    3499993


Q ss_pred             -----CCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEE
Q 031870           93 -----VSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI  142 (151)
Q Consensus        93 -----~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i  142 (151)
                           .+||+++| .|+|++++.+|+.+|.|+|+++|+++|++|++++|++++++|
T Consensus        79 ~~~~~~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~l~d~~~~~i~C~~~~v~I  134 (134)
T PF02221_consen   79 LFGNGLSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWKLTDQDGEEIACFEFPVKI  134 (134)
T ss_dssp             SCCSSTTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEEEEETTTEEEEEEEEEEEE
T ss_pred             cccccccCccCCCcEEEEEEEEEcccceeeEEEEEEEEEEeCCCCEEEEEEEEeEC
Confidence                 59999999 679999999999999999999999999998999999999987

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi

Probab=99.95  E-value=6e-27  Score=164.49  Aligned_cols=117  Identities=17%  Similarity=0.324  Sum_probs=105.5

Q ss_pred             eeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEccc--CCCCCCcC-----CC
Q 031870           23 FTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSE--THDICEEV-----SC   95 (151)
Q Consensus        23 ~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~--~~d~C~~~-----~C   95 (151)
                      |++|+++.+....++|++|+..||++++|++++++++|+++++++++++++.++++|+++|..  +.|+|+..     .|
T Consensus         1 ~~~C~~~~~~i~~V~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~~gi~~p~~~~~~d~C~~~~~~~~~C   80 (127)
T cd00912           1 LVDCSDNSANIKEVLLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMSQGIKVLNPDNSYDFCEAGLPKPSFC   80 (127)
T ss_pred             CcccCCCCCceeEEEeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEECCEEeccCCCCCCcccccCcccccC
Confidence            789987433445788899999999999999999999999999999999999999999888664  78999863     89


Q ss_pred             CCCCC-cEEEEEEEEeCC-CCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 031870           96 PIEAG-NFVLSHAETLPG-YTPPGVYTLKMKMIGKNGYQLTCFSFK  139 (151)
Q Consensus        96 Pv~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~i~C~~~~  139 (151)
                      |+++| +|+|+.+++||+ .+|.+.|+++|++.|++|++++|++++
T Consensus        81 Pl~~G~~~~~~~~~~v~~~~~P~~~~~v~~~l~~~~~~~v~C~~~~  126 (127)
T cd00912          81 PLRKGQQYSYAKTVNVPEFTIPTIEYQVVLEDVTDKGEVLACAQAT  126 (127)
T ss_pred             CcCCCCEEEEEEEEecCcccCCCeeEEEEEEEEcCCCCEEEEEecc
Confidence            99999 999999999997 899999999999999889999999986

These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.

>cd00915 MD-1_MD-2 MD-1 and MD-2 are cofactors required for LPS signaling through cell surface receptors

Probab=99.88  E-value=7.8e-22  Score=137.98  Aligned_cols=112  Identities=17%  Similarity=0.272  Sum_probs=98.1

Q ss_pred             cceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCC
Q 031870           21 IDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSC   95 (151)
Q Consensus        21 ~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~C   95 (151)
                      +-|+.|+.  .     +.-+++++||.++||++++|+++|++++++++.++++.++.+|+++|.....+|++     +.|
T Consensus        11 ~~y~~cd~--~-----~~~~~~~~pC~l~rg~n~~I~~~f~~~~d~~~L~~~v~~~~~g~~lP~~~e~~C~~g~~~~s~C   83 (130)
T cd00915          11 FSYSSCDP--M-----QDFSFSAEPCSTLKGTNGFIRIKFILRRDIKELYFNLSLNVNGIEVLTRSEIICHGYLDKYSFC   83 (130)
T ss_pred             EEeeeCCc--h-----heeEeecccccceeCCcEEEEEEEEECcccceeEEEEEEEECCccCCCCCcccccCCCcccccC
Confidence            45788876  2     22578899999999999999999999999999999999999998887322349996     689


Q ss_pred             CCCCC-cEEEE--EEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870           96 PIEAG-NFVLS--HAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKF  140 (151)
Q Consensus        96 Pv~~G-~~~~~--~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~  140 (151)
                      |+++| +|+|+  +++++.+ ||.++|+++|+|+|++++.++|+++.+
T Consensus        84 P~~kGet~~Y~~p~slpi~~-yP~~~y~V~weL~d~~~~~l~Cf~~ti  130 (130)
T cd00915          84 GALKGETVYYVGPFSFKGIL-IPQGQYRCVAELIVENRETVACANFTI  130 (130)
T ss_pred             CccCCceEEEeeeecccccc-cCCccEEEEEEEECCCCCEEEEEEEEC
Confidence            99999 89999  8899999 999999999999999899999999863

MD-2 and its binding partner, Toll-like receptor 4 (TLR4), are essential for the innate immune responses of mammalian cells to bacterial lipopolysaccharide (LPS); MD-2 directly binds the lipid A moiety of LPS. The TLR4-like receptor, RP105, which mediates LPS-induced lymphocyte proliferation, interacts with MD-1; MD-1 enhances RP105-mediated LPS-induced growth of B cells. These proteins belong to the ML domain family.

>cd00258 GM2-AP GM2 activator protein (GM2-AP) is a non-enzymatic lysosomal protein that acts as cofactor in the sequential degradation of gangliosides

Probab=99.85  E-value=4.1e-20  Score=132.78  Aligned_cols=121  Identities=22%  Similarity=0.486  Sum_probs=100.2

Q ss_pred             ccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEE--ce-E-EEc------cc-CC
Q 031870           20 AIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRY--FG-I-RVH------SE-TH   87 (151)
Q Consensus        20 ~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~--~~-~-~v~------~~-~~   87 (151)
                      +..|++|+.   +.+.+.|++++++|+|+.++++++++++++.++++.++ ++.+.++.  .| | ++|      .. ..
T Consensus         2 ~fsW~nCg~---~~dp~~i~sl~l~PdPi~ipg~~tvs~~~~~~~~lsSp~~~~l~v~k~v~g~Wi~iPC~~~~GSCty~   78 (162)
T cd00258           2 GFSWSNCDG---ESLPAVIKSLTVNPDPINIPGDLTVSTVGSTSVPLSSPLKVILTLEKEVAGLWMKIPCLDNIGSCTYD   78 (162)
T ss_pred             CcccccCCC---CCCceEEeeeEEcCCCcccCCcEEEEEEEEEeeEcCCCcEEEEEEEeecccEEEEcccccccCccccc
Confidence            568999998   45799999999999999999999999999999999998 67666654  33 3 433      12 45


Q ss_pred             CCCCcC---------------------CCCCCCCcEEEEEEE-Ee-----CCCCCCeEEEEEEEEEeCCCCEEEEEEEEE
Q 031870           88 DICEEV---------------------SCPIEAGNFVLSHAE-TL-----PGYTPPGVYTLKMKMIGKNGYQLTCFSFKF  140 (151)
Q Consensus        88 d~C~~~---------------------~CPv~~G~~~~~~~~-~i-----p~~~P~g~y~v~~~l~d~~~~~i~C~~~~~  140 (151)
                      |+|+.+                     +||+++|+|++..+. .|     |++++.|+|++++.+ +++|++++|+++.+
T Consensus        79 d~C~~l~~~~~~~~~Cp~~l~~~g~pC~CP~~~G~y~lp~s~f~lP~~~LPs~l~~G~Y~i~~~l-~~~g~~l~C~~~~~  157 (162)
T cd00258          79 NACDLLDTLIPPGQQCPEPLRTYGLPCHCPFKEGVYSLPDSTFTLPNVDLPSWLTNGNYRITGIL-MADGKELGCGKFTF  157 (162)
T ss_pred             chhhchhcccCCCCCCCchhhccCCccCCCCCCcceEccceeeecccccCCCccCCCcEEEEEEE-CCCCCEEEEEEEEE
Confidence            788842                     699999999996653 56     888999999999998 68899999999999


Q ss_pred             EEcc
Q 031870          141 KIGF  144 (151)
Q Consensus       141 ~i~~  144 (151)
                      .+..
T Consensus       158 sL~~  161 (162)
T cd00258         158 SLES  161 (162)
T ss_pred             EEec
Confidence            9864

GM2A is an essential cofactor for beta-hexosaminidase A (Hex A) in the enzymatic hydrolysis of GM2 ganglioside to GM3. Mutation of the gene results in the AB variant of Tay-Sachs disease. GM2-AP and similar proteins belong to the ML domain family.

>PF14558 TRP_N: ML-like domain

Probab=98.84  E-value=8.4e-08  Score=68.51  Aligned_cols=120  Identities=20%  Similarity=0.383  Sum_probs=82.7

Q ss_pred             ccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc---CCCC
Q 031870           20 AIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE---VSCP   96 (151)
Q Consensus        20 ~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~---~~CP   96 (151)
                      ...|.+|.+  +  ..+.++..++.=.|  ..+++.+++.|..+..-...++++++...|........|.|+.   ..||
T Consensus         4 t~~f~~Cl~--~--s~~~~~~Fdv~~~~--~n~tl~~~v~G~s~~~~~~vtl~~~v~ayg~~~~~~~~d~C~~~~~~lCP   77 (141)
T PF14558_consen    4 TSSFSNCLD--N--SYFTASRFDVTYDP--DNRTLVFDVYGNSSISNKYVTLFISVNAYGYTPYNETFDPCDSNVPGLCP   77 (141)
T ss_pred             eCChhHcCC--c--cccceEEEeEEEcC--CCCEEEEEEEEEeccCCcEEEEEEEEEeeccccccccCCcccCCCCcccc
Confidence            457899977  3  35555555544222  3557888888885543222457777777788777888999995   5899


Q ss_pred             CCCCcEEEEEEEEe---------CCC---CCCeEEEEEEEEEeC-CCCEEEEEEEEEEEccc
Q 031870           97 IEAGNFVLSHAETL---------PGY---TPPGVYTLKMKMIGK-NGYQLTCFSFKFKIGFG  145 (151)
Q Consensus        97 v~~G~~~~~~~~~i---------p~~---~P~g~y~v~~~l~d~-~~~~i~C~~~~~~i~~~  145 (151)
                      +.||.+....+..+         |.+   +|...-++++++.|. ++++++|++..++=.++
T Consensus        78 l~~~~~~~~~~~~~~~~~~~~~ip~iay~~pdl~a~~~v~~~~~~~~~~iaCv~a~ltng~t  139 (141)
T PF14558_consen   78 LPPGFFAIASSQIIVPPSFTSQIPSIAYAFPDLDATVRVILGDTDTGTQIACVQATLTNGKT  139 (141)
T ss_pred             ccccccccccccccCCHHHhhcCCceeEEcCCceEEEEEEEccCCCCCEEEEEEEEEECCCc
Confidence            99996555544433         322   366666778888887 68899999999876554

>PF15418 DUF4625: Domain of unknown function (DUF4625)

Probab=97.62  E-value=0.0044  Score=43.78  Aligned_cols=93  Identities=22%  Similarity=0.311  Sum_probs=60.9

Q ss_pred             CCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCCCCCCC--cEEEEEEEEeCCCCCCeEEE
Q 031870           48 VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSCPIEAG--NFVLSHAETLPGYTPPGVYT  120 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~CPv~~G--~~~~~~~~~ip~~~P~g~y~  120 (151)
                      .++|+++.+++.++.+..+.+-++.+.-.+.+-. -......|..     -.=.+..|  .|.++..+.||..+|+|.|.
T Consensus        32 ~~~G~~ihfe~~i~d~~~i~si~VeIH~nfd~H~-h~~~~~~~~~~~~~~~~~~~~~g~~~~~~h~~i~IPa~a~~G~YH  110 (132)
T PF15418_consen   32 ATRGDDIHFEADISDNSAIKSIKVEIHNNFDHHT-HSTEAGECEKPWVFEQDYDIYGGKKNYDFHEHIDIPADAPAGDYH  110 (132)
T ss_pred             EecCCcEEEEEEEEcccceeEEEEEEecCcCccc-ccccccccccCcEEEEEEcccCCcccEeEEEeeeCCCCCCCcceE
Confidence            6799999999999998888776555532221110 0000111111     00023334  69999999999999999999


Q ss_pred             EEEEEEeCCCCEEEEEEEEEEE
Q 031870          121 LKMKMIGKNGYQLTCFSFKFKI  142 (151)
Q Consensus       121 v~~~l~d~~~~~i~C~~~~~~i  142 (151)
                      +.++++|+.|.+-. ....++|
T Consensus       111 ~~i~VtD~~Gn~~~-~~~~i~I  131 (132)
T PF15418_consen  111 FMITVTDAAGNQTE-EERSIKI  131 (132)
T ss_pred             EEEEEEECCCCEEE-EEEEEEE
Confidence            99999999988643 4444443

>smart00697 DM8 Repeats found in several Drosophila proteins

Probab=96.71  E-value=0.011  Score=38.35  Aligned_cols=36  Identities=28%  Similarity=0.680  Sum_probs=28.9

Q ss_pred             CCCCCCCCcEEEEE-E---EEeCCCCCCeEEEEEEEEEeC
Q 031870           93 VSCPIEAGNFVLSH-A---ETLPGYTPPGVYTLKMKMIGK  128 (151)
Q Consensus        93 ~~CPv~~G~~~~~~-~---~~ip~~~P~g~y~v~~~l~d~  128 (151)
                      ..||+++|.|.+.- .   ..+|+.+|.|.|++++++...
T Consensus        40 ~~CP~~~g~y~~~n~~l~~~~~p~~lP~G~y~~~~~~~~~   79 (93)
T smart00697       40 DTCPLPKGHYYLRNFRLDENLLPSFLPDGDYRLNLTFFFG   79 (93)
T ss_pred             CCCCCcCCeEEEEeeEeCcccCCccCCCeeEEEEEEEEcC
Confidence            37999999876644 2   367888999999999999853

>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B

Probab=96.44  E-value=0.053  Score=37.46  Aligned_cols=91  Identities=15%  Similarity=0.222  Sum_probs=53.4

Q ss_pred             ccEEEeEEEeeC-----C-CCCCCCcEEEEEEEEEceeecCeEEEEEEEE-ceEEEcccCCCCCCcCCCCCCCCcEEEEE
Q 031870           34 FPLKVQQIKIIP-----D-PVVTGKPAIFNISAVTDRSVSGGKVMIEVRY-FGIRVHSETHDICEEVSCPIEAGNFVLSH  106 (151)
Q Consensus        34 ~~v~I~~~~~~P-----c-~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~v~~~~~d~C~~~~CPv~~G~~~~~~  106 (151)
                      ..++|+++.+..     + .+..|+++.+++++..++++....+.+.++- .|..+...+...-.......++|.++++.
T Consensus        11 ~~~~I~~v~i~~~~g~~~~~~~~ge~~~i~i~~~~~~~i~~~~~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~   90 (142)
T PF14524_consen   11 GEARITSVRILDSDGEPTSSFESGEPIRIRIDYEVNEDIDDPVFGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTF   90 (142)
T ss_dssp             SSEEEEEEEEEETTEES-SSEETTSEEEEEEEEEESS-EEEEEEEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEE
T ss_pred             CCEEEEEEEEEeCCCCEeeEEeCCCEEEEEEEEEECCCCCccEEEEEEEcCCCCEEEEECccccCccccccCCCEEEEEE
Confidence            456666666543     3 4678999999999999999888665555442 34444332111111111112266888888


Q ss_pred             EEEeCCCCCCeEEEEEEEEE
Q 031870          107 AETLPGYTPPGVYTLKMKMI  126 (151)
Q Consensus       107 ~~~ip~~~P~g~y~v~~~l~  126 (151)
                      +++.+  +.+|.|.+.+.+.
T Consensus        91 ~i~~~--L~~G~Y~i~v~l~  108 (142)
T PF14524_consen   91 TIPKP--LNPGEYSISVGLG  108 (142)
T ss_dssp             EEE----B-SEEEEEEEEEE
T ss_pred             EEcCc--cCCCeEEEEEEEE
Confidence            87777  7789999999994

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins

Probab=95.57  E-value=0.22  Score=32.23  Aligned_cols=84  Identities=23%  Similarity=0.428  Sum_probs=54.0

Q ss_pred             cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCC
Q 031870           35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGY  113 (151)
Q Consensus        35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~  113 (151)
                      .+.| .....|..+..|+++++++............+.+.+..++-.+-.  ...     =.+.+| ..++++++..+  
T Consensus         3 DL~v-~~~~~~~~~~~g~~~~i~~~V~N~G~~~~~~~~v~~~~~~~~~~~--~~i-----~~L~~g~~~~v~~~~~~~--   72 (101)
T PF07705_consen    3 DLTV-SITVSPSNVVPGEPVTITVTVKNNGTADAENVTVRLYLDGNSVST--VTI-----PSLAPGESETVTFTWTPP--   72 (101)
T ss_dssp             -EEE--EEEC-SEEETTSEEEEEEEEEE-SSS-BEEEEEEEEETTEEEEE--EEE-----SEB-TTEEEEEEEEEE-S--
T ss_pred             CEEE-EEeeCCCcccCCCEEEEEEEEEECCCCCCCCEEEEEEECCceecc--EEE-----CCcCCCcEEEEEEEEEeC--
Confidence            3555 777888899999999999998877666666677777777754411  111     236888 67778777777  


Q ss_pred             CCCeEEEEEEEEEeCCC
Q 031870          114 TPPGVYTLKMKMIGKNG  130 (151)
Q Consensus       114 ~P~g~y~v~~~l~d~~~  130 (151)
                       -+|.|++++.+ |.++
T Consensus        73 -~~G~~~i~~~i-D~~n   87 (101)
T PF07705_consen   73 -SPGSYTIRVVI-DPDN   87 (101)
T ss_dssp             -S-CEEEEEEEE-STTT
T ss_pred             -CCCeEEEEEEE-eeCC
Confidence             56899998877 4433

; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known

Probab=95.33  E-value=0.11  Score=32.81  Aligned_cols=72  Identities=15%  Similarity=0.341  Sum_probs=41.3

Q ss_pred             CCCCcEEEEEEEEEcee--ecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEE
Q 031870           49 VTGKPAIFNISAVTDRS--VSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKM  125 (151)
Q Consensus        49 ~~G~~~~i~~~~~~~~~--i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l  125 (151)
                      .+|+.+++++..+...+  +....+.+.+ =.||.+....    .... .+.+| ..++++.+.+|...+.|.|.+++++
T Consensus         2 ~~G~~~~~~~tv~N~g~~~~~~v~~~l~~-P~GW~~~~~~----~~~~-~l~pG~s~~~~~~V~vp~~a~~G~y~v~~~a   75 (78)
T PF10633_consen    2 TPGETVTVTLTVTNTGTAPLTNVSLSLSL-PEGWTVSASP----ASVP-SLPPGESVTVTFTVTVPADAAPGTYTVTVTA   75 (78)
T ss_dssp             -TTEEEEEEEEEE--SSS-BSS-EEEEE---TTSE---EE----EEE---B-TTSEEEEEEEEEE-TT--SEEEEEEEEE
T ss_pred             CCCCEEEEEEEEEECCCCceeeEEEEEeC-CCCccccCCc----cccc-cCCCCCEEEEEEEEECCCCCCCceEEEEEEE
Confidence            47889999998887543  3333344443 3566521110    0122 67999 7999999999999999999999886


Q ss_pred             E
Q 031870          126 I  126 (151)
Q Consensus       126 ~  126 (151)
                      .
T Consensus        76 ~   76 (78)
T PF10633_consen   76 R   76 (78)
T ss_dssp             E
T ss_pred             E
Confidence            4

It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.

>smart00675 DM11 Domains in hypothetical proteins in Drosophila including 2 in CG15241 and CG9329

Probab=95.31  E-value=0.43  Score=34.91  Aligned_cols=107  Identities=12%  Similarity=0.112  Sum_probs=63.1

Q ss_pred             ccceeecCCCCC----CCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeE---EEEEEEE---ceE-E-E-cccC
Q 031870           20 AIDFTYCGQYDE----ENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGK---VMIEVRY---FGI-R-V-HSET   86 (151)
Q Consensus        20 ~~~~~~C~~~~~----~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~---~~v~~~~---~~~-~-v-~~~~   86 (151)
                      .-.|++|.++-+    ....+++++.++..    -++.++++...+..-+++-+.   +++.+..   |-| | + -...
T Consensus        10 ~~ifs~C~n~~pg~~~i~~~~D~S~l~~~~----d~~~i~vsGn~t~~wdi~P~DrI~~~~~~~~~eRG~W~PTv~s~~~   85 (164)
T smart00675       10 PDLYSPCTDAPPGNIGLREAFDISNLVVDM----DPDGLHISGNITVIWDVQPTDRISARVSVMHFERGTWQPTVFNMAT   85 (164)
T ss_pred             ccccccCCCCCCCccchhhccchhheEEEE----cCCeEEEeeeEEEEEecCCCCeEEEEEEEEEecCCeeeeeEEeeec
Confidence            345899987211    13457778888775    455677777777777785442   3444332   335 2 2 3346


Q ss_pred             CCCCCcC-----------------------CCCCCCC-cEEE-----EEEE-EeCCCCCCeEEEEEEEEE--eCCC
Q 031870           87 HDICEEV-----------------------SCPIEAG-NFVL-----SHAE-TLPGYTPPGVYTLKMKMI--GKNG  130 (151)
Q Consensus        87 ~d~C~~~-----------------------~CPv~~G-~~~~-----~~~~-~ip~~~P~g~y~v~~~l~--d~~~  130 (151)
                      .|.|...                       .||-.|| .+.+     ...+ .++...-.|+|.+.+.+.  |+.|
T Consensus        86 ~dFC~~m~d~~q~WY~~wtk~i~N~~evk~kC~~~~Gtv~~~e~~~~~l~~~n~~~p~~~Gr~K~v~~~~AfD~~~  161 (164)
T smart00675       86 PDFCKSMFDKNQYWYKYWTKYISNKEEIKEKCLTTKGTVLVYEPFLLKLKLSNVNGPNLRGRYKAVVTFEAFDEKN  161 (164)
T ss_pred             cChhHHhcCCCcchHHHHHHhcccHHHHHhcCCCCCCeEEEecceeEEEEEeccCCCCcCCcEEEEEEEEeecccC
Confidence            7999841                       6999999 5433     2333 234344468777766654  5444

>PF06477 DUF1091: Protein of unknown function (DUF1091); InterPro: IPR010512 This entry contains a number of proteins from Drosophila melanogaster and other insects

Probab=94.76  E-value=0.043  Score=34.88  Aligned_cols=28  Identities=36%  Similarity=0.933  Sum_probs=22.2

Q ss_pred             CCCCCCCcEEEEE-E---EEeCCCCCCeEEEE
Q 031870           94 SCPIEAGNFVLSH-A---ETLPGYTPPGVYTL  121 (151)
Q Consensus        94 ~CPv~~G~~~~~~-~---~~ip~~~P~g~y~v  121 (151)
                      .||+++|.|.+.- .   ..+|+.+|.|.|.+
T Consensus        50 ~CP~~~g~Y~~~n~~~~~~~~P~~~p~G~y~i   81 (81)
T PF06477_consen   50 TCPFKKGNYYLRNFTIDEKFLPSFLPEGDYRI   81 (81)
T ss_pred             CCCCCCCEEEEEEEEECcccCCCcCCCeEEEC
Confidence            7999999877653 3   36899999999874

Their function is unknown.

>PF02115 Rho_GDI: RHO protein GDP dissociation inhibitor; InterPro: IPR000406 The GDP dissociation inhibitor for rho proteins, rho GDI, regulates GDP/GTP exchange by inhibiting the dissociation of GDP from them

Probab=94.34  E-value=0.68  Score=34.97  Aligned_cols=94  Identities=19%  Similarity=0.302  Sum_probs=57.7

Q ss_pred             CCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEEEEE
Q 031870           48 VVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTLKMK  124 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v~~~  124 (151)
                      ++-|....+.+.|.+++++-+| +..-.++-.|+++-.... .-+ .-.| ++..|++.+.. ..|+ ++-.|+|+++.+
T Consensus       103 IKEGs~Y~l~i~F~V~~~ivsGL~Y~q~Vkr~Gi~Vdk~~~-miG-sy~P-~~e~y~~~~p~eeaPsG~laRG~Y~aks~  179 (200)
T PF02115_consen  103 IKEGSKYRLKITFKVQHEIVSGLKYVQTVKRKGIPVDKREE-MIG-SYAP-QTEPYEKTFPEEEAPSGMLARGSYTAKSK  179 (200)
T ss_dssp             EETT-EEEEEEEEEE-SS-EEEEEEEEEEEETTEEEEEEEE-EEE-EE---ESSEEEEEEEEEE--BSTTT-EEEEEEEE
T ss_pred             ccCCCEEEEEEEEEECCccccCcEEEEEEEECCEeEcccce-eee-ccCC-CCcceEEeCcCccCCCceeEeeeeeEEEE
Confidence            6678889999999999885554 555556678887633221 111 1112 12246666543 4554 567899999999


Q ss_pred             EEeCCCCEEEEEEEEEEEcc
Q 031870          125 MIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus       125 l~d~~~~~i~C~~~~~~i~~  144 (151)
                      ++|+++....=++-.+.|..
T Consensus       180 f~DdD~~~~l~~~w~feI~K  199 (200)
T PF02115_consen  180 FVDDDKNVHLEWEWSFEIKK  199 (200)
T ss_dssp             EEETTSSECEEEEEEEEEES
T ss_pred             EEeCCCcEEEEEEEEEEEec
Confidence            99988887666777777754

The protein contains 204 amino acids, with a calculated Mr value of 23,421. Hydropathy analysis shows it to be largely hydrophilic, with a single hydrophobic region. Results of database searches suggest rho GDI is a novel protein, currently with no known homologue. The protein plays an important role in the activation of the superoxide (O2-)-generating NADPH oxidase of phagocytes. This process requires the interaction of membrane-associated cytochrome b559 with 3 cytosolic components: p47-phox, p67-phox and a heterodimer of the small G-protein p21rac1 and rho GDI []. The association of p21rac and GDI inhibits dissociation of GDP from p21rac, thereby maintaining it in an inactive form. The proteins are attached via a lipid tail on p21rac that binds to the hydrophobic region of GDI []. Dissociation of these proteins might be mediated by the release of lipids (e.g., arachidonate and phosphatidate) from membranes through the action of phospholipases []. The lipids may then compete with the lipid tail on p21rac for the hydrophobic pocket on GDI.; GO: 0005094 Rho GDP-dissociation inhibitor activity, 0005737 cytoplasm; PDB: 2JHV_A 2JHU_A 2JI0_A 2JHS_A 1RHO_A 2JHW_A 1FT3_A 2JHZ_B 1QVY_C 1FST_B ....

>PF04234 CopC: CopC domain; InterPro: IPR007348 CopC is a bacterial blue copper protein that binds 1 atom of copper per protein molecule

Probab=94.01  E-value=0.37  Score=31.84  Aligned_cols=29  Identities=28%  Similarity=0.605  Sum_probs=22.2

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870          105 SHAETLPGYTPPGVYTLKMKMIGKNGYQL  133 (151)
Q Consensus       105 ~~~~~ip~~~P~g~y~v~~~l~d~~~~~i  133 (151)
                      .+++.+|..+++|.|+++|+....||..+
T Consensus        60 ~~~~~l~~~l~~G~YtV~wrvvs~DGH~~   88 (97)
T PF04234_consen   60 TLTVPLPPPLPPGTYTVSWRVVSADGHPV   88 (97)
T ss_dssp             EEEEEESS---SEEEEEEEEEEETTSCEE
T ss_pred             EEEEECCCCCCCceEEEEEEEEecCCCCc
Confidence            55677888899999999999999888765

Along with CopA, CopC mediates copper resistance by sequestration of copper in the periplasm [].; GO: 0005507 copper ion binding, 0046688 response to copper ion, 0042597 periplasmic space; PDB: 1IX2_B 1LYQ_A 2C9P_C 2C9R_A 2C9Q_A 1M42_A 1OT4_A 1NM4_A.

>PRK10301 hypothetical protein; Provisional

Probab=92.48  E-value=0.38  Score=33.50  Aligned_cols=28  Identities=21%  Similarity=0.390  Sum_probs=23.3

Q ss_pred             EEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870          106 HAETLPGYTPPGVYTLKMKMIGKNGYQL  133 (151)
Q Consensus       106 ~~~~ip~~~P~g~y~v~~~l~d~~~~~i  133 (151)
                      .+++++..+++|.|+|+|+....||..+
T Consensus        88 ~~v~l~~~L~~G~YtV~Wrvvs~DGH~~  115 (124)
T PRK10301         88 LIVPLADSLKPGTYTVDWHVVSVDGHKT  115 (124)
T ss_pred             EEEECCCCCCCccEEEEEEEEecCCCcc
Confidence            4567777889999999999998888754

>TIGR02186 alph_Pro_TM conserved hypothetical protein

Probab=90.37  E-value=1.2  Score=35.05  Aligned_cols=40  Identities=15%  Similarity=0.278  Sum_probs=35.4

Q ss_pred             EEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870          104 LSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus       104 ~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      |..++.+|...|.|.|++++.+. ++|+.+.=.+.++++.+
T Consensus       182 Fra~i~LPAnvp~G~Y~v~v~L~-r~G~vv~~~~t~l~V~K  221 (261)
T TIGR02186       182 FRATLRLPANVPNGTHEVRAYLF-RGGVFIARTELALEIVK  221 (261)
T ss_pred             EEEeeecCCCCCCceEEEEEEEE-eCCEEEEEEEeEEEEEE
Confidence            56678999999999999999998 68999988888888875

This family consists of predicted transmembrane proteins of about 270 amino acids. Members are found, so far, only among the Alphaproteobacteria and only once in each genome.

>PF09608 Alph_Pro_TM: Putative transmembrane protein (Alph_Pro_TM); InterPro: IPR019088 This entry consists of predicted transmembrane proteins of about 270 amino acids

Probab=89.06  E-value=1.7  Score=33.62  Aligned_cols=41  Identities=20%  Similarity=0.459  Sum_probs=34.0

Q ss_pred             EEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870          103 VLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus       103 ~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      .|..++.+|...|.|.|++++.+. ++|+.+.=.+.++++.+
T Consensus       156 lFra~i~LPanvp~G~Y~v~v~l~-rdG~vv~~~~~~l~V~K  196 (236)
T PF09608_consen  156 LFRARIPLPANVPPGDYTVRVYLF-RDGQVVASQETPLRVRK  196 (236)
T ss_pred             eEEEEeEcCCCCCcceEEEEEEEE-ECCEEEEEEeeEEEEEE
Confidence            366789999999999999999998 57888877777776654

They are found predominantly, though not exclusively, in alphaproteobacteria, generally only once in each genome.

>PLN00044 multi-copper oxidase-related protein; Provisional

Probab=87.74  E-value=2.9  Score=36.68  Aligned_cols=17  Identities=29%  Similarity=0.585  Sum_probs=14.2

Q ss_pred             cCCCCCCCC-cEEEEEEE
Q 031870           92 EVSCPIEAG-NFVLSHAE  108 (151)
Q Consensus        92 ~~~CPv~~G-~~~~~~~~  108 (151)
                      .+.||++|| .|+|.+..
T Consensus       102 ~TQcPI~PG~sftY~F~~  119 (596)
T PLN00044        102 GTNCAIPAGWNWTYQFQV  119 (596)
T ss_pred             CCcCCcCCCCcEEEEEEe
Confidence            378999999 78888775

>PF00339 Arrestin_N: Arrestin (or S-antigen), N-terminal domain; InterPro: IPR011021 G protein-coupled receptors are a large family of signalling molecules that respond to a wide variety of extracellular stimuli

Probab=87.73  E-value=0.86  Score=31.51  Aligned_cols=32  Identities=22%  Similarity=0.374  Sum_probs=18.0

Q ss_pred             CCCCCCCcEEEEEEEEeCCCCCC--------eEEEEEEEE
Q 031870           94 SCPIEAGNFVLSHAETLPGYTPP--------GVYTLKMKM  125 (151)
Q Consensus        94 ~CPv~~G~~~~~~~~~ip~~~P~--------g~y~v~~~l  125 (151)
                      ..-+.+|+|+|.+++.+|..+|+        ..|.+++.+
T Consensus        87 ~~~l~~G~~~fpF~f~LP~~lP~S~~~~~g~I~Y~l~a~l  126 (149)
T PF00339_consen   87 PNILPPGEYEFPFEFQLPSNLPSSFEGSHGSIRYKLKATL  126 (149)
T ss_dssp             -----C-TTEEEEEE---TTS--SEEEE-SEEEEEEEEEE
T ss_pred             eecccCCCEEEEEEEECCCCCCceEeccCcCEEEEEEEEE
Confidence            45678999999999999988775        468888887

The receptors relay the information encoded by the ligand through the activation of heterotrimeric G proteins and intracellular effector molecules. To ensure the appropriate regulation of the signalling cascade, it is vital to properly inactivate the receptor. This inactivation is achieved, in part, by the binding of a soluble protein, arrestin, which uncouples the receptor from the downstream G protein after the receptors are phosphorylated by G protein-coupled receptor kinases. In addition to the inactivation of G protein-coupled receptors, arrestins have also been implicated in the endocytosis of receptors and cross talk with other signalling pathways. Arrestin (retinal S-antigen) is a major protein of the retinal rod outer segments. It interacts with photo-activated phosphorylated rhodopsin, inhibiting or 'arresting' its ability to interact with transducin []. The protein binds calcium, and shows similarity in its C terminus to alpha-transducin and other purine nucleotide-binding proteins. In mammals, arrestin is associated with autoimmune uveitis. Arrestins comprise a family of closely-related proteins that includes beta-arrestin-1 and -2, which regulate the function of beta-adrenergic receptors by binding to their phosphorylated forms, impairing their capacity to activate G(S) proteins; Cone photoreceptors C-arrestin (arrestin-X) [], which could bind to phosphorylated red/green opsins; and Drosophila phosrestins I and II, which undergo light-induced phosphorylation, and probably play a role in photoreceptor transduction [, , ]. The crystal structure of bovine retinal arrestin comprises two domains of antiparallel beta-sheets connected through a hinge region and one short alpha-helix on the back of the amino-terminal fold []. The binding region for phosphorylated light-activated rhodopsin is located at the N-terminal domain, as indicated by the docking of the photoreceptor to the three-dimensional structure of arrestin. The N-terminal domain consists of an immunoglobulin-like beta-sandwich structure. This entry represents proteins with immunoglobulin-like domains that are similar to those found in arrestin.; PDB: 1SUJ_A 3UGX_A 1CF1_B 1AYR_A 3UGU_A 3P2D_B 1ZSH_A 2WTR_B 3GC3_A 1G4R_A ....

>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]

Probab=86.79  E-value=2.6  Score=36.78  Aligned_cols=34  Identities=26%  Similarity=0.557  Sum_probs=21.6

Q ss_pred             EEEceEEEccc-CCCCCCc-CCCCCCCC-cEEEEEEEE
Q 031870           75 VRYFGIRVHSE-THDICEE-VSCPIEAG-NFVLSHAET  109 (151)
Q Consensus        75 ~~~~~~~v~~~-~~d~C~~-~~CPv~~G-~~~~~~~~~  109 (151)
                      +.+.|+.-... -.|. .. +.||++|| +|+|.+++.
T Consensus        83 ihWhGv~q~kn~w~DG-~~~TqCPI~Pg~~~tY~F~v~  119 (563)
T KOG1263|consen   83 IHWHGVRQRKNPWQDG-VYITQCPIQPGENFTYRFTVK  119 (563)
T ss_pred             EEeccccccCCccccC-CccccCCcCCCCeEEEEEEeC
Confidence            33555533222 2367 54 89999999 788887743

>KOG3205 consensus Rho GDP-dissociation inhibitor [Signal transduction mechanisms]

Probab=86.23  E-value=12  Score=28.01  Aligned_cols=92  Identities=17%  Similarity=0.243  Sum_probs=55.3

Q ss_pred             CCCCCcEEEEEEEEEceeecCeE-EEEEEEEceEEEcccCCCCCCcCCCCCCCC--cEEEEEEE-EeCC-CCCCeEEEEE
Q 031870           48 VVTGKPAIFNISAVTDRSVSGGK-VMIEVRYFGIRVHSETHDICEEVSCPIEAG--NFVLSHAE-TLPG-YTPPGVYTLK  122 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i~~~~-~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G--~~~~~~~~-~ip~-~~P~g~y~v~  122 (151)
                      ++-|.+..+.+.|..+++|.+|- ..-.++--|+.+-...+ .=+.    ..|.  .|.|.... .-|+ .+-.|+|.++
T Consensus       101 iKEGs~Y~lki~F~Vq~eIvSGLrY~q~v~r~Gv~VDk~~~-MlGS----y~P~~e~ye~~~p~eeAPsGmlaRG~Ys~~  175 (200)
T KOG3205|consen  101 IKEGSEYRLKISFRVQREIVSGLRYVQTVYRTGVKVDKTKY-MLGS----YGPQAEPYEFVTPEEEAPSGMLARGSYSAK  175 (200)
T ss_pred             eecCcEEEEEEEEEEeeheeccceeeeEEeecceEEeehhh-hccc----CCCCCcceeeeCCcccCCccceeecceeee
Confidence            56788999999999999998883 33334456666533222 1111    1222  35554322 1221 3456899999


Q ss_pred             EEEEeCCCCEEEEEEEEEEEcc
Q 031870          123 MKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus       123 ~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      -.++|+|+..-.=.+-.+.|..
T Consensus       176 skF~DDDk~~hLe~~w~~~I~K  197 (200)
T KOG3205|consen  176 SKFTDDDKTCHLEWNWTFDIKK  197 (200)
T ss_pred             eEEecCCCceEEEEEEEEEEee
Confidence            9999977765555555666543

>PF00868 Transglut_N: Transglutaminase family; InterPro: IPR001102 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Protein-glutamine gamma-glutamyltransferases (2

Probab=84.96  E-value=6.1  Score=27.09  Aligned_cols=78  Identities=18%  Similarity=0.165  Sum_probs=40.4

Q ss_pred             CCCCCcEEEEEEEEEceeecCeEEEEEEEEceEE---------Ecc-cCCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCC
Q 031870           48 VVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIR---------VHS-ETHDICEEVSCPIEAG-NFVLSHAETLPGYTPP  116 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~---------v~~-~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~  116 (151)
                      ++||+.+.+.+.|.-..+-..-.+.+....|.-|         ++. ...+.=.. ..=+... .-+.++.+..|+..|-
T Consensus        29 VRRGQ~F~i~l~f~r~~~~~~d~l~l~~~~G~~P~~~~gT~~~~~~~~~~~~~~W-~a~v~~~~~~~~tv~V~spa~A~V  107 (118)
T PF00868_consen   29 VRRGQPFTITLRFNRPFDPSKDQLSLEFETGPNPSESKGTKVVFPVSSSLDSSSW-SARVESQDGNSVTVSVTSPANAPV  107 (118)
T ss_dssp             EETTSEEEEEEEESSS--TTTEEEEEEEEESSS--TTTTSEEEEEECSSS-TSSS-EEEEEEEETTEEEEEEE--TTS--
T ss_pred             EECCCEEEEEEEEcCCcCCCCcEEEEEEEEecccccCCCcEEEEEEccCCCCCCE-EEEEEecCCCEEEEEEECCCCCce
Confidence            6899999999999765333344577777776321         111 01110000 0000111 1336667788999999


Q ss_pred             eEEEEEEEEE
Q 031870          117 GVYTLKMKMI  126 (151)
Q Consensus       117 g~y~v~~~l~  126 (151)
                      |.|++.++..
T Consensus       108 G~y~l~v~~~  117 (118)
T PF00868_consen  108 GRYKLSVETK  117 (118)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEe
Confidence            9999988754

3.2.13 from EC) (TGase) are calcium-dependent enzymes that catalyse the cross-linking of proteins by promoting the formation of isopeptide bonds between the gamma-carboxyl group of a glutamine in one polypeptide chain and the epsilon-amino group of a lysine in a second polypeptide chain. TGases also catalyse the conjugation of polyamines to proteins [, ]. Transglutaminases are widely distributed in various organs, tissues and body fluids. The best known transglutaminase is blood coagulation factor XIII, a plasma tetrameric protein composed of two catalytic A subunits and two non-catalytic B subunits. Factor XIII is responsible for cross-linking fibrin chains, thus stabilising the fibrin clot. There are commonly three domains: N-terminal, middle (IPR013808 from INTERPRO) and C-terminal (IPR013807 from INTERPRO). This entry represents the N-terminal domain found in transglutaminases.; GO: 0018149 peptide cross-linking; PDB: 1L9N_B 1NUF_A 1NUD_A 1NUG_B 1L9M_A 1KV3_C 3S3S_A 2Q3Z_A 3LY6_A 3S3P_A ....

>cd00912 ML The ML (MD-2-related lipid-recognition) domain is present in MD-1, MD-2, GM2 activator protein, Niemann-Pick type C2 (Npc2) protein, phosphatidylinositol/phosphatidylglycerol transfer protein (PG/PI-TP), mite allergen Der p 2 and several proteins of unknown function in plants, animals and fungi

Probab=84.84  E-value=3.2  Score=28.54  Aligned_cols=40  Identities=25%  Similarity=0.345  Sum_probs=32.0

Q ss_pred             CCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEEE
Q 031870           86 THDICEEVSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMKM  125 (151)
Q Consensus        86 ~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l  125 (151)
                      +...|...+||+..| +++++.++........++..+.+++
T Consensus        15 ~v~pc~~~pC~~~~g~~~~i~~~f~~~~~~~~~~~~v~~~~   55 (127)
T cd00912          15 LLSPCDPLPCPDHRGGNYNLSVTGTLREDIKSLYVDLALMS   55 (127)
T ss_pred             EeCCCCCCCCcccCCCeEEEEEEEEECccccEEEEEEEEEE
Confidence            346788889999999 8999999888887777777776664

These single-domain proteins form two anti-parallel beta-pleated sheets stabilized by three disulfide bonds and with an accessible central hydrophobic cavity, and are predicted to mediate diverse biological functions through interaction with specific lipids.

>PF13754 Big_3_4: Bacterial Ig-like domain (group 3)

Probab=84.44  E-value=3.1  Score=24.41  Aligned_cols=35  Identities=26%  Similarity=0.404  Sum_probs=24.5

Q ss_pred             eCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEccc
Q 031870          110 LPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGFG  145 (151)
Q Consensus       110 ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~~  145 (151)
                      +|.. ..|.|.++++..|..|+.-.--...|.|-.+
T Consensus        18 ~~~~-~dG~y~itv~a~D~AGN~s~~~~~~~tiDtt   52 (54)
T PF13754_consen   18 VPAL-ADGTYTITVTATDAAGNTSTSSSVTFTIDTT   52 (54)
T ss_pred             CCCC-CCccEEEEEEEEeCCCCCCCccceeEEEeCC
Confidence            4444 6999999999999988764444445555443

>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators

Probab=83.81  E-value=1.8  Score=25.84  Aligned_cols=18  Identities=44%  Similarity=0.833  Sum_probs=13.8

Q ss_pred             CCCeEEEEEEEEEeCCCC
Q 031870          114 TPPGVYTLKMKMIGKNGY  131 (151)
Q Consensus       114 ~P~g~y~v~~~l~d~~~~  131 (151)
                      +|+|+|+++++..|.+|.
T Consensus        36 L~~G~Y~l~V~a~~~~~~   53 (66)
T PF07495_consen   36 LPPGKYTLEVRAKDNNGK   53 (66)
T ss_dssp             --SEEEEEEEEEEETTS-
T ss_pred             CCCEEEEEEEEEECCCCC
Confidence            589999999999997765

However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.

>PF02221 E1_DerP2_DerF2: ML domain; InterPro: IPR003172 The MD-2-related lipid-recognition (ML) domain is implicated in lipid recognition, particularly in the recognition of pathogen related products

Probab=82.95  E-value=3.1  Score=28.44  Aligned_cols=33  Identities=15%  Similarity=0.269  Sum_probs=27.5

Q ss_pred             eCCCCCCCCcEEEEEEEEEceeecCeEEEEEEE
Q 031870           44 IPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR   76 (151)
Q Consensus        44 ~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~   76 (151)
                      .+||+++|+..+.+.++.....+..++.+++++
T Consensus        84 ~~CPi~~G~~~~~~~~~~i~~~~p~~~~~i~~~  116 (134)
T PF02221_consen   84 LSCPIKAGEYYTYTYTIPIPKIYPPGKYTIQWK  116 (134)
T ss_dssp             TTSTBTTTEEEEEEEEEEESTTSSSEEEEEEEE
T ss_pred             ccCccCCCcEEEEEEEEEcccceeeEEEEEEEE
Confidence            489999999999999999888888887666544

It has an immunoglobulin-like beta-sandwich fold similar to that of E-set Ig domains. This domain is present in the following proteins: Epididymal secretory protein E1 (also known as Niemann-Pick C2 protein), which is known to bind cholesterol. Niemann-Pick disease type C2 is a fatal hereditary disease characterised by accumulation of low-density lipoprotein-derived cholesterol in lysosomes []. House-dust mite allergen proteins such as Der f 2 from Dermatophagoides farinae and Der p 2 from Dermatophagoides pteronyssinus []. ; PDB: 2AG9_B 1G13_B 2AG2_B 2AG4_A 1TJJ_C 1PU5_C 1PUB_A 2AF9_A 3T6Q_D 3M7O_B ....

>smart00737 ML Domain involved in innate immunity and lipid metabolism

Probab=82.46  E-value=3.5  Score=27.79  Aligned_cols=32  Identities=16%  Similarity=0.207  Sum_probs=25.7

Q ss_pred             CCCCCCCCcEEEEEEEEEceeecCeEEEEEEE
Q 031870           45 PDPVVTGKPAIFNISAVTDRSVSGGKVMIEVR   76 (151)
Q Consensus        45 Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~   76 (151)
                      .||+.+|+.++.+..+.....+..++.++.+.
T Consensus        71 ~CPl~~G~~~~~~~~~~v~~~~P~~~~~v~~~  102 (118)
T smart00737       71 KCPIEKGETVNYTNSLTVPGIFPPGKYTVKWE  102 (118)
T ss_pred             CCCCCCCeeEEEEEeeEccccCCCeEEEEEEE
Confidence            79999999999999888887777776655543

ML (MD-2-related lipid-recognition) is a novel domain identified in MD-1, MD-2, GM2A, Npc2 and multiple proteins of unknown function in plants, animals and fungi. These single-domain proteins were predicted to form a beta-rich fold containing multiple strands, and to mediate diverse biological functions through interacting with specific lipids.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	151
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	2e-10
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	9e-10
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	2e-07
3m7o_A	162	Lymphocyte antigen 86; beta sheet, glycoprotein, i	3e-07

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A* Length = 130

 Score = 54.6 bits (131), Expect = 2e-10
 Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 4/128 (3%)

Query: 19  QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYF 78
           + + F  CG +      + V      P  +  G+    N++  ++      K ++     
Sbjct: 1   EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVM 60

Query: 79  GIRVHSET--HDICE-EVSCPIEAGNFVLSHAE-TLPGYTPPGVYTLKMKMIGKNGYQLT 134
           GI V       D C+  + CPIE         +  +    P     ++ ++      +  
Sbjct: 61  GIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFF 120

Query: 135 CFSFKFKI 142
           C+    ++
Sbjct: 121 CWQIPIEV 128

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A* Length = 164

 Score = 53.3 bits (127), Expect = 9e-10
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 43/164 (26%)

Query: 18  IQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG---KVMIE 74
           + +  +  C    E   P  ++ + + PDP+V       ++   T   +S      +++E
Sbjct: 2   MSSFSWDNCD---EGKDPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLE 58

Query: 75  VRYFGIRVH--------SETH-DICEEV---------------------SCPIEAGNFVL 104
               G+ +         S T    C+ +                      CP + G + L
Sbjct: 59  KEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSL 118

Query: 105 SHAET------LPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 142
             +E       LP +   G Y ++  ++  +G +L C      +
Sbjct: 119 PKSEFVVPDLELPSWLTTGNYRIES-VLSSSGKRLGCIKIAASL 161

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A Length = 129

 Score = 46.1 bits (109), Expect = 2e-07
 Identities = 20/132 (15%), Positives = 46/132 (34%), Gaps = 17/132 (12%)

Query: 21  IDFTYCGQYDEENFPLKVQQIKIIPDP------VVTGKPAIFNISAVTDRSVSGGKVMIE 74
           +D   C          +++++ +          +  GKP         +++    K+ I+
Sbjct: 3   VDVKDCAN-------NEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIK 55

Query: 75  VRYFGIRVH--SETHDICEEVSCPIEAG-NFVLSHAETLPGYTPPGV-YTLKMKMIGKNG 130
               G+ +       + C  + CP+  G  +   +   +P   P      + +K++G NG
Sbjct: 56  ASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNG 115

Query: 131 YQLTCFSFKFKI 142
                 +   KI
Sbjct: 116 VLACAIATHAKI 127

>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C* Length = 162

 Score = 46.3 bits (109), Expect = 3e-07
 Identities = 20/130 (15%), Positives = 41/130 (31%), Gaps = 14/130 (10%)

Query: 16  SSIQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEV 75
           S    + +  C        PL+   + I                 +  + +    + I +
Sbjct: 35  SGGLEVVYQSCD-------PLQDFGLSIDQCSKQIQSNLNIRFGIILRQDIRKLFLDITL 87

Query: 76  RYFGIRVHSETHDICEEVS-----CPIEAGNFVLSHAE-TLPGYT-PPGVYTLKMKMIGK 128
              G  + + ++ +CEE       C    G  +        PG   P G Y L +++  +
Sbjct: 88  MAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNE 147

Query: 129 NGYQLTCFSF 138
           N   + C + 
Sbjct: 148 NRATVACANA 157

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	151
1nep_A	130	EPV20, BNPC2, epididymal secretory protein E1; nie	99.98
1xwv_A	129	DER F II; beta sheets, allergen; HET: PE3 XPE; 1.8	99.97
2ag4_A	164	GM2-AP, ganglioside GM2 activator; complex of sing	99.91
3m7o_A	162	Lymphocyte antigen 86; beta sheet, glycoprotein, i	99.9
3mtx_A	151	Protein MD-1; LY86, RP105 associated protein, immu	99.76
3vq2_C	144	Lymphocyte antigen 96; leucine rich repeat MD-2 re	99.7
2e56_A	144	Lymphocyte antigen 96; innate immunity, lipid-bind	99.33
1kmt_A	141	RHO GDP-dissociation inhibitor 1; immunoglobulin f	94.66
2r5o_A	188	Putative ATP binding component of ABC- transporter	94.63
3idu_A	127	Uncharacterized protein; all beta-protein, structu	94.23
1ds6_B	180	RHO GDP-dissociation inhibitor 2; beta sandwhich,	94.09
1doa_B	219	RHO GDI 1, protein (GDP-dissociation inhibitor 1);	93.67
1lyq_A	104	PCOC copper resistance protein; beta barrel, IG do	90.08
2c9r_A	102	COPC, copper resistance protein C; copper transpor	89.46
2vtc_A	249	CEL61B, cellulase; hydrolase, glycoside; HET: NAG;	89.29
2kut_A	122	Uncharacterized protein; structural genomics, PSI-	83.82
3eja_A	208	Protein GH61E; beta sandwich, fibronectin type III	83.31
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	82.83
1xq4_A	139	Protein APAG; all beta protein, structural genomic	82.59
4eir_A	223	Polysaccharide monooxygenase-2; GH61, PMO, cellula	82.31
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	81.74
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	81.7
2l0d_A	114	Cell surface protein; structural genomics, northea	81.02

>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*

Probab=99.98  E-value=8.1e-32  Score=189.09  Aligned_cols=126  Identities=15%  Similarity=0.313  Sum_probs=114.8

Q ss_pred             cccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEc--ccCCCCCCc-CCC
Q 031870           19 QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVH--SETHDICEE-VSC   95 (151)
Q Consensus        19 ~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~--~~~~d~C~~-~~C   95 (151)
                      +++.|++|+++.+....++|++|+..||+++||++++++++|+++++++++++++.++++|+++|  ....|+|+. +.|
T Consensus         1 ~~~~f~~C~~~~~~i~~V~V~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~C   80 (130)
T 1nep_A            1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC   80 (130)
T ss_dssp             CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred             CCcEEEECCCCCCeEeEEEECCCCCCCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcC
Confidence            35789999984334478999999999999999999999999999999999999999999998774  567899974 899


Q ss_pred             CCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           96 PIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        96 Pv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      |+++| .|+|+++++|++.+|.++|+++|+|+|++|+.++|++++++|++
T Consensus        81 Pl~~G~~~~y~~~lpV~~~~P~~~~~v~~~L~d~~~~~l~C~~~~~~I~~  130 (130)
T 1nep_A           81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVEA  130 (130)
T ss_dssp             SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             cccCCcEEEEEEEeEecccCCCccEEEEEEEEcCCCCEEEEEEEeEEEEC
Confidence            99999 89999999999999999999999999999999999999999974

>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A

Probab=99.97  E-value=9.8e-31  Score=183.34  Aligned_cols=122  Identities=20%  Similarity=0.360  Sum_probs=113.5

Q ss_pred             ccceeecCCCCCCCccEEEeEE-EeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEc--ccCCCCCCcCCCC
Q 031870           20 AIDFTYCGQYDEENFPLKVQQI-KIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVH--SETHDICEEVSCP   96 (151)
Q Consensus        20 ~~~~~~C~~~~~~~~~v~I~~~-~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~--~~~~d~C~~~~CP   96 (151)
                      ++.|++|++  +....++|++| +..||+++||++++++++|+++++++++++++.++++|+++|  ....|+|.+++||
T Consensus         2 ~~~~~~C~~--~~~~~V~V~~C~~~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CP   79 (129)
T 1xwv_A            2 QVDVKDCAN--NEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCP   79 (129)
T ss_dssp             BBCCEESSS--SCEEEEEETTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSS
T ss_pred             CceEEECcC--CCccEEEECCCCCCCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCCccCc
Confidence            578999998  44789999999 999999999999999999999999999999999999998775  5678999999999


Q ss_pred             CCCC-cEEEEEEEEeCCCCCCeE-EEEEEEEEeCCCCEEEEE-EEEEEEcc
Q 031870           97 IEAG-NFVLSHAETLPGYTPPGV-YTLKMKMIGKNGYQLTCF-SFKFKIGF  144 (151)
Q Consensus        97 v~~G-~~~~~~~~~ip~~~P~g~-y~v~~~l~d~~~~~i~C~-~~~~~i~~  144 (151)
                      +++| .|+|+++++|++.+|.++ |+++|+|+|++| .++|| +++++|+.
T Consensus        80 l~~G~~~~y~~~~~v~~~~P~v~~~~v~~~L~d~~~-~l~Cf~~~~~~I~~  129 (129)
T 1xwv_A           80 LVKGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNG-VLACAIATHAKIRD  129 (129)
T ss_dssp             BCTTCEEEEEEEEECCTTSCCBSCEEEEEEEEETTE-EEEEEEECCEEEEC
T ss_pred             ccCCEEEEEEEEeEecccCCCCceEEEEEEEEcCCC-cEEEEecccEEEeC
Confidence            9999 899999999999999999 999999999877 89999 99999963

>2ag4_A GM2-AP, ganglioside GM2 activator; complex of single chain lipid and fatty acids, lipid binding; HET: LP3 OLA; 1.80A {Homo sapiens} SCOP: b.95.1.1 PDB: 1tjj_A* 2af9_A* 2ag2_A* 1pu5_A* 2ag9_A* 1g13_A* 1pub_A* 2agc_A*

Probab=99.91  E-value=1.4e-23  Score=152.41  Aligned_cols=121  Identities=20%  Similarity=0.471  Sum_probs=106.4

Q ss_pred             cccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEE---ce-EEEcccC-------
Q 031870           19 QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRY---FG-IRVHSET-------   86 (151)
Q Consensus        19 ~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~---~~-~~v~~~~-------   86 (151)
                      ..+.|++|++   ..+.++|++++++|+|+++|+++++++++.+++++++| ++++.+++   |+ ++++..+       
T Consensus         3 ~~~~~~~C~~---~~~~~~i~~v~i~PdP~~~g~~~ti~~~~~l~~~i~~g~k~~v~v~~~~~g~~i~l~~~~~~GSC~y   79 (164)
T 2ag4_A            3 SSFSWDNCDE---GKDPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTF   79 (164)
T ss_dssp             CCCEEEESST---TTCSEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEE
T ss_pred             ccCEEecCCC---CCceEEEeEEEEeCCCCCCCCceEEEEEEEEeeccCCCCEEEEEEEEEecCceEEeeeeCCcCcccc
Confidence            4689999987   37899999999999999999999999999999999999 57777765   34 5777766       


Q ss_pred             CCCCCcC---------------------CCCCCCCcEEEEEEE------EeCCCCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 031870           87 HDICEEV---------------------SCPIEAGNFVLSHAE------TLPGYTPPGVYTLKMKMIGKNGYQLTCFSFK  139 (151)
Q Consensus        87 ~d~C~~~---------------------~CPv~~G~~~~~~~~------~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~  139 (151)
                      .|+|+.+                     +||+++|.|+.+.+.      .+|+++|+|+|++++.+.| +|++++|++++
T Consensus        80 ~DlC~~l~~~~~~~~~~~~~~~~~g~~~~CPi~~G~Y~l~~~~~~lp~~~lP~~l~~G~Y~v~~~~~~-~~~~l~Ci~~~  158 (164)
T 2ag4_A           80 EHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVLSS-SGKRLGCIKIA  158 (164)
T ss_dssp             CCHHHHHHHHSCTTSCCCTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred             cchhHhhhhhcccccccCcccccCCccccCCCCCcEEEEeeeEeecCcccccCccCCceEEEEEEEec-CCCEEEEEEEE
Confidence            7999952                     899999999988765      8888999999999999987 89999999999


Q ss_pred             EEEc
Q 031870          140 FKIG  143 (151)
Q Consensus       140 ~~i~  143 (151)
                      +++.
T Consensus       159 ~~l~  162 (164)
T 2ag4_A          159 ASLK  162 (164)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>3m7o_A Lymphocyte antigen 86; beta sheet, glycoprotein, immunity, inflammatory response, I immunity, secreted, immune system; HET: NAG L9R NDG; 1.65A {Mus musculus} PDB: 3t6q_C* 3b2d_C* 3rg1_C*

Probab=99.90  E-value=2.1e-23  Score=149.16  Aligned_cols=134  Identities=16%  Similarity=0.222  Sum_probs=100.8

Q ss_pred             CcceehHHHHHHhhhhc----c--ccc-------------ceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEE
Q 031870            1 MNRQLLLLFTFYVLVSS----I--QAI-------------DFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAV   61 (151)
Q Consensus         1 m~~~~~ll~~~~l~~~~----~--~~~-------------~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~   61 (151)
                      ||++..+++.+.|+.+.    .  ++|             .|++|++  ..  .+   +++++|||+.+|++.++++.|+
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~w~~h~~C~s~~~~v~Y~~CD~--~q--~~---~vsi~PC~~~~G~nl~i~a~~I   73 (162)
T 3m7o_A            1 MNGVAAALLVWILTSPSSSDHGSENGWPKHTACNSGGLEVVYQSCDP--LQ--DF---GLSIDQCSKQIQSNLNIRFGII   73 (162)
T ss_dssp             -------------------------CCCCEEEEEETTEEEEEEECCT--TC--CC---EEEESSCCSEECSSCEEEEEEE
T ss_pred             CchHHHHHHhhheeccCccCCCCcCcCceeeeEcCCCcEEEEEeCCC--CC--Cc---eEECCCCCCCCCCcEEEEEEEE
Confidence            88777778877777653    1  223             3688876  22  33   4489999999999999999999


Q ss_pred             EceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCCCCCCC-cEEEEEEEEeCC-CCCCeEEEEEEEEEeCCCCEEE
Q 031870           62 TDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSCPIEAG-NFVLSHAETLPG-YTPPGVYTLKMKMIGKNGYQLT  134 (151)
Q Consensus        62 ~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~CPv~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~i~  134 (151)
                      +++|++...+++.+++++++++..++|+|++     ..||+++| .++++..+.+|+ .+|+|+|++.++++++|++.++
T Consensus        74 lr~dI~~ly~~l~v~~~~i~l~~~~~~lCe~~~~~~sfCp~~KGE~v~~~~~v~~p~~e~P~G~Y~v~aea~~~d~~~i~  153 (162)
T 3m7o_A           74 LRQDIRKLFLDITLMAKGSSILNYSYPLCEEDQPKFSFCGRRKGEQIYYAGPVNNPGLDVPQGEYQLLLELYNENRATVA  153 (162)
T ss_dssp             CSSCCSEEEEEEEEEETTEEEEEEEEEEEETTBSSSSSTTCCTTCEEEEEEECCCCEEECCSEEEEEEEEEEETTCCEEE
T ss_pred             EcccceeeEEEEEEEECCEEccccccccccCCCCccccCCcCCCeEEEEEEEeecCceecCCCcEEEEEEEEcCCCCEEE
Confidence            9999997788999999999999999999997     47999999 578999999999 5999999999999999999999


Q ss_pred             EEEEEEE
Q 031870          135 CFSFKFK  141 (151)
Q Consensus       135 C~~~~~~  141 (151)
                      |.++.+.
T Consensus       154 Cln~TIi  160 (162)
T 3m7o_A          154 CANATVT  160 (162)
T ss_dssp             EEEEEEE
T ss_pred             EeEEEEE
Confidence            9999653

>3mtx_A Protein MD-1; LY86, RP105 associated protein, immune system; HET: PGT PGE; 2.00A {Gallus gallus} PDB: 3mu3_A*

Probab=99.76  E-value=1.7e-17  Score=116.64  Aligned_cols=117  Identities=18%  Similarity=0.238  Sum_probs=104.5

Q ss_pred             cceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCC
Q 031870           21 IDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSC   95 (151)
Q Consensus        21 ~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~C   95 (151)
                      +.|+.|++  -  +.+   +++++||+-.+|++.++++.+++.+|+....+++.++++++.++..++++|+.     .-|
T Consensus        19 i~Y~~CD~--~--q~~---~isi~pC~~~~~~~l~I~~~~IlR~dIkelY~~l~v~~~~~~ll~~~e~LCe~~~~~~sfC   91 (151)
T 3mtx_A           19 IYYKSCDP--Q--QDF---AFSIDRCSDVTTHTFDIRAAMVLRQSIKELYAKVDLIINGKTVLSYSETLCGPGLSKLIFC   91 (151)
T ss_dssp             EEEEECCT--T--CCC---EEEESCGGGGGGTEEEEEEEEECCSCCSSEEEEEEEEETTEEEEEEEEEEESTTCCCSTTT
T ss_pred             EEEEecCC--c--cCc---EEEcccCccccCCcEEEEEEEEEhhhhheeEEEEEEEECcEeeeecccccccCCCCccccc
Confidence            45788866  2  233   66789999999999999999999999999889999999999999999999996     579


Q ss_pred             CCCCC-cEEEEEEEEeCC-CCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           96 PIEAG-NFVLSHAETLPG-YTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        96 Pv~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      |..+| .++++..+.+|. .+|+|+|++.+++++++++.++|+++.+.-..
T Consensus        92 ~~~KGE~i~~~~~v~~pg~~~p~G~Y~vvaea~~~d~~~I~CLn~Tii~~~  142 (151)
T 3mtx_A           92 GKKKGEHLYYEGPITLGIKEIPQRDYTITARLTNEDRATVACADFTVKNYL  142 (151)
T ss_dssp             TCCTTCEEEEEEEEECCCSSCCCEEEEEEEEEEETTSCEEEEEEEEEEECC
T ss_pred             CccCCeeEEEEEEeecCceecCCCcEEEEEEEEcCCCCEEEEeeEEEEEEe
Confidence            99999 569999999999 79999999999999999999999999887554

>3vq2_C Lymphocyte antigen 96; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_C* 2z64_C*

Probab=99.70  E-value=4.7e-16  Score=108.87  Aligned_cols=118  Identities=17%  Similarity=0.316  Sum_probs=103.1

Q ss_pred             ccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CC
Q 031870           20 AIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VS   94 (151)
Q Consensus        20 ~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~   94 (151)
                      .+.|++|++  . ...+.|   +++||...+|.+..+++.+.+++|+....+++.+..+++.+|.-++++|.+     ..
T Consensus        15 eV~Y~~CD~--~-q~~~~i---svdpC~~~~gs~~~l~~~~IpR~Dik~Ly~~~~l~~~~~~lp~~~e~iC~g~~~~ySf   88 (144)
T 3vq2_C           15 IISYSYCDH--L-KFPISI---SSEPCIRLRGTNGFVHVEFIPRGNLKYLYFNLFISVNSIELPKRKEVLCHGHDDDYSF   88 (144)
T ss_dssp             EEEEEEBTT--B-CCCEEE---EEESCCCTTCEEEEEEEEECCSSCCTTEEEEEEEEETTEECCCEEEESCCSSSCSSGG
T ss_pred             EEEEEeCCC--c-cCCcEE---eccccccccCCCcEEEEEEEEcCcceeEEEEEEEeecccccccCccCcccCCCCccee
Confidence            467999977  2 224544   899999999999999999999999998888888888889998888899997     37


Q ss_pred             CCCCCC-cEEEEEEEEeCCC-CCCeEEEEEEEEEeCC-CCEEEEEEEEEEEc
Q 031870           95 CPIEAG-NFVLSHAETLPGY-TPPGVYTLKMKMIGKN-GYQLTCFSFKFKIG  143 (151)
Q Consensus        95 CPv~~G-~~~~~~~~~ip~~-~P~g~y~v~~~l~d~~-~~~i~C~~~~~~i~  143 (151)
                      ||..+| ++.|+..+.++.+ +|.|.|++.+++++++ ++.++|.+|.+...
T Consensus        89 Cg~~KGE~i~~~~~~~~~~~~fpkG~Y~~v~e~~~gd~~~~l~ClnfTii~~  140 (144)
T 3vq2_C           89 CRALKGETVNTSIPFSFEGILFPKGHYRCVAEAIAGDTEEKLFCLNFTIIHR  140 (144)
T ss_dssp             GGCCTTCCEEEEEEEEECCCCCCSSEEEEEEEEEETTTTEEEEEEEEEEEC-
T ss_pred             cccccCcEEEEEEEeecCcEEccCCcEEEEEEEecCCcccEEEEeeEEEEEe
Confidence            999999 7999999999998 9999999999999988 78899999987643

>2e56_A Lymphocyte antigen 96; innate immunity, lipid-binding, lipid binding protein; HET: NAG MYR; 2.00A {Homo sapiens} PDB: 2e59_A* 3fxi_C* 3ula_B* 2z65_C*

Probab=99.33  E-value=8.9e-11  Score=81.23  Aligned_cols=117  Identities=18%  Similarity=0.334  Sum_probs=100.2

Q ss_pred             cceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCc-----CCC
Q 031870           21 IDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEE-----VSC   95 (151)
Q Consensus        21 ~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~-----~~C   95 (151)
                      +.|+.|++  .. ..+   +++++||.-.+|.+..+++.+.+.+|+....+++.+...|+.+|..++.+|.+     .-|
T Consensus        16 i~Y~sCD~--~q-~~~---sin~~pC~~~~~~~~~l~~~~IpR~Dik~Ly~nl~l~~~~~~~~~~ke~iC~g~dd~ySFC   89 (144)
T 2e56_A           16 ISYTYCDK--MQ-YPI---SINVNPCIELKGSKGLLHIFYIPRRDLKQLYFNLYITVNTMNLPKRKEVICRGSDDDYSFC   89 (144)
T ss_dssp             EEEEECSS--CC-SCC---EEEEESCCCTTCEEEEEEEEECCSSCCTTCEEEEEEEETTEECCCEEEECSCSSSSSCGGG
T ss_pred             EEEeecCc--cc-CCc---EeccchhhhhccCceEEEEEEEEhhHHHHHhhhheeeeccccccccccccccCCCCCceee
Confidence            46888876  21 233   56788999999999999999999999999999999999999999988999986     469


Q ss_pred             CCCCC-cEEEEEEEEeCC-CCCCeEEEEEEEEEeCCC-CEEEEEEEEEEEc
Q 031870           96 PIEAG-NFVLSHAETLPG-YTPPGVYTLKMKMIGKNG-YQLTCFSFKFKIG  143 (151)
Q Consensus        96 Pv~~G-~~~~~~~~~ip~-~~P~g~y~v~~~l~d~~~-~~i~C~~~~~~i~  143 (151)
                      -..+| +..++..+..+. .+|.|.|++.+++++++. +.++|++|.+...
T Consensus        90 ~~lKGEti~t~~p~s~~g~~fpkG~Y~~~~ea~~~~~e~~l~ClNfTii~~  140 (144)
T 2e56_A           90 RALKGETVNTTISFSFKGIKFSKGKYKCVVEAISGSPEEMLFCLEFVILHQ  140 (144)
T ss_dssp             GCCTTCCEEEEEEEEECCCTTCCSEEEEEEEEEETTTTEEEEEEEEEEEEC
T ss_pred             ccccCceEEEeeecccCcEecCCCcEEEEEEEecCCchheEEEeeEEEEEc
Confidence            99999 788888888886 589999999999999654 6799999988654

>1kmt_A RHO GDP-dissociation inhibitor 1; immunoglobulin fold, beta sandwich motif, isoprenyl-binding, protein binding; 1.30A {Homo sapiens} SCOP: b.1.18.8 PDB: 2jhu_A 2jhv_A 2jhw_A 1ft3_A 1ft0_A 1qvy_A 2jhz_A 2bxw_A 2jhx_A 2jhy_A 1rho_A 1fso_A 2ji0_A 2jhs_A* 2jht_A 1ajw_A 1gdf_A

Probab=94.66  E-value=0.46  Score=32.92  Aligned_cols=98  Identities=14%  Similarity=0.227  Sum_probs=62.9

Q ss_pred             CCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEE
Q 031870           45 PDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTL  121 (151)
Q Consensus        45 Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v  121 (151)
                      |=.++-|....+.++|.+++++-+| +..-.++-.|+++-.... .-+ .-.| ++..|++.+.. ..|+ .+-.|.|++
T Consensus        38 ~f~iKEG~~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~-mlG-sy~P-~~e~y~~~~~~eeaPsG~laRG~Y~a  114 (141)
T 1kmt_A           38 SFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY-MVG-SYGP-RAAAYEFLTPVEEAPKGMLARGSYSI  114 (141)
T ss_dssp             CEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE-EEE-EECC-CSSCEEEECCCEECCCSTTTCEEEEE
T ss_pred             ceEccCCcEEEEEEEEEEccccccCcEEEEEEEECCEEECcceE-eee-ccCC-CCCcceecCCCccCCceeEEeeeeee
Confidence            4446778899999999999887666 444445667777622211 111 0112 12246665532 3443 456799999


Q ss_pred             EEEEEeCCCCEEEEEEEEEEEccc
Q 031870          122 KMKMIGKNGYQLTCFSFKFKIGFG  145 (151)
Q Consensus       122 ~~~l~d~~~~~i~C~~~~~~i~~~  145 (151)
                      +-++.|+++....=++-.++|...
T Consensus       115 ~s~F~DDD~~~hl~~~w~feI~Kd  138 (141)
T 1kmt_A          115 KSRFTDDDKTDHLSWEWNLTIKKD  138 (141)
T ss_dssp             EEEEECTTCCCSEEEEEEEEEESC
T ss_pred             eEEEEcCCCcEEEEEEEeEEEecC
Confidence            999999888777778888888754

>2r5o_A Putative ATP binding component of ABC- transporter; immunoglobulin fold, carbohydrate binding, domain swapping, O antigen export; HET: PG4; 1.30A {Escherichia coli}

Probab=94.63  E-value=0.52  Score=33.74  Aligned_cols=94  Identities=14%  Similarity=0.070  Sum_probs=60.4

Q ss_pred             ccEEEeEEEee-----C-CCCCCCCcEEEEEEEEEceeecCeEEEEEEEE-ceEEEcccC-CCCCCcCCCC-CCCCc-EE
Q 031870           34 FPLKVQQIKII-----P-DPVVTGKPAIFNISAVTDRSVSGGKVMIEVRY-FGIRVHSET-HDICEEVSCP-IEAGN-FV  103 (151)
Q Consensus        34 ~~v~I~~~~~~-----P-c~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~-~~~~v~~~~-~d~C~~~~CP-v~~G~-~~  103 (151)
                      ..++|.++.+.     | ..+..|+++++++.+.+.+++....+-+.++- .|..+...+ ...-....=+ +++|. +.
T Consensus        46 g~a~I~~v~l~d~~G~~~~~~~~Ge~v~l~i~~~~~~~i~~~v~G~~Ik~~~G~~I~g~nT~~~~~~~~~~~~~~G~~~~  125 (188)
T 2r5o_A           46 GGAKIIDYHIQSAGVDFPPSLTGNQQTDFLMKVVFEYDFDCVVPGILIKTLDGLFLYGTNSFLASEGRENISVSRGDVRV  125 (188)
T ss_dssp             CSEEEEEEEEEETTEESCSSEETTCEEEEEEEEEESSCEEEEEEEEEEEETTCCEEEEEEHHHHTTTCCCEEECTTCEEE
T ss_pred             CcEEEEEEEEEECCCCEeeEEeCCCEEEEEEEEEECCcCCccEEEEEEECCCCCEEEecCcccccccccccccCCCCEEE
Confidence            46677777664     2 34678999999999999999887665555543 344443221 1110111011 47885 46


Q ss_pred             EEEEEEeCCCCCCeEEEEEEEEEeCC
Q 031870          104 LSHAETLPGYTPPGVYTLKMKMIGKN  129 (151)
Q Consensus       104 ~~~~~~ip~~~P~g~y~v~~~l~d~~  129 (151)
                      ..+.+++  .+.+|.|.+.+.+.+.+
T Consensus       126 v~f~f~l--~L~~G~Y~lsv~i~~~~  149 (188)
T 2r5o_A          126 FKFSLPV--DLNSGDYLLSFGISAGN  149 (188)
T ss_dssp             EEEEEEC--CBCSEEEEEEEEEEEEE
T ss_pred             EEEEEec--ccCCCeEEEEEEEecCC
Confidence            6666664  47789999999998755

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A

Probab=94.23  E-value=0.71  Score=31.26  Aligned_cols=82  Identities=22%  Similarity=0.263  Sum_probs=57.2

Q ss_pred             cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCC
Q 031870           35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGY  113 (151)
Q Consensus        35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~  113 (151)
                      .+.+ +++ .|..++.|+.+++++..............|.++++|-.+-..        .-.+.+| .-++++++. |  
T Consensus        18 DL~V-~is-~P~~v~~G~~~ti~vtV~N~G~~~a~~~~V~lyvng~~v~t~--------~v~La~G~s~tv~f~~~-~--   84 (127)
T 3idu_A           18 DLTV-EIK-GPDVVGVNKLAEYEVHVKNLGGIGVPSTKVRVYINGTLYKNW--------TVSLGPKEEKVLTFNWT-P--   84 (127)
T ss_dssp             CEEE-EEE-SCSEECTTCCEEEEEEEEECSSSCEEEEEEEEEETTEEEEEE--------EEEECTTCEEEEEEEEC-C--
T ss_pred             CeEE-Eec-CCCcccCCCEEEEEEEEEECCCCccCCcEEEEEECCEEEeeE--------EeccCCCCeEEEEEEEE-c--
Confidence            4555 554 688899999999999999877666666788888888644221        1147889 556666654 2  


Q ss_pred             CCCeEEEEEEEEEeCCC
Q 031870          114 TPPGVYTLKMKMIGKNG  130 (151)
Q Consensus       114 ~P~g~y~v~~~l~d~~~  130 (151)
                      ...|.|++++.. |.++
T Consensus        85 ~~~G~~~v~AvV-D~~n  100 (127)
T 3idu_A           85 TQEGMYRINATV-DEEN  100 (127)
T ss_dssp             SSCEEEEEEEEE-STTC
T ss_pred             CCCcEEEEEEEE-cCCC
Confidence            248999999976 4433

>1ds6_B RHO GDP-dissociation inhibitor 2; beta sandwhich, protein-protein complex, G-domain, immunoglobulin fold, walker fold, GTP-binding protein; HET: GDP; 2.35A {Homo sapiens} SCOP: b.1.18.8 PDB: 1fst_A

Probab=94.09  E-value=0.47  Score=34.21  Aligned_cols=95  Identities=15%  Similarity=0.220  Sum_probs=61.5

Q ss_pred             CCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEEEEE
Q 031870           48 VVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTLKMK  124 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v~~~  124 (151)
                      ++-|....+.++|.+++++-+| +..-.++-.|+++-.... ..+. -.| ++..|++.+.. ..|+ ++-.|.|+++-+
T Consensus        80 iKEGs~Y~iki~F~V~~eivsGLkY~q~v~r~Gi~Vdk~~~-mlGs-y~P-~~e~y~~~~p~eeaPsG~laRG~Y~a~sk  156 (180)
T 1ds6_B           80 LKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF-MVGS-YGP-RPEEYEFLTPVEEAPKGMLARGTYHNKSF  156 (180)
T ss_dssp             EETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEE-EEEE-ECC-CSSCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             ecCCcEEEEEEEEEEecccccCcEEEEEEEECCEEECCceE-eeec-cCC-CCCceeecCCCccCCcceeeeeeeeeeEE
Confidence            5668889999999998777666 444445567777622111 1110 112 11246665542 3443 456799999999


Q ss_pred             EEeCCCCEEEEEEEEEEEccc
Q 031870          125 MIGKNGYQLTCFSFKFKIGFG  145 (151)
Q Consensus       125 l~d~~~~~i~C~~~~~~i~~~  145 (151)
                      +.|+++....=++-.++|...
T Consensus       157 F~DDD~~~hl~~~wsfeI~Kd  177 (180)
T 1ds6_B          157 FTDDDKQDHLSWEWNLSIKKE  177 (180)
T ss_dssp             EECTTCCCCEEEEEEEEEESS
T ss_pred             EEcCCCceEEEEEEEEEEeeC
Confidence            999888887778888888753

>1doa_B RHO GDI 1, protein (GDP-dissociation inhibitor 1); GTP-binding protein, CDC42, cell cycle; HET: GDP GER; 2.60A {Bos taurus} SCOP: b.1.18.8 PDB: 1hh4_D* 1cc0_E*

Probab=93.67  E-value=0.53  Score=34.90  Aligned_cols=97  Identities=14%  Similarity=0.221  Sum_probs=62.3

Q ss_pred             CCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEEE
Q 031870           46 DPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTLK  122 (151)
Q Consensus        46 c~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v~  122 (151)
                      -.++-|....+.++|.+++++-+| +..-.++-.|+++-.... ... .-.| ++-.|++.+.. .-|+ ++-.|+|+++
T Consensus       117 F~IKEGs~Y~lki~FkV~~eIVsGLkY~q~VkR~GI~Vdk~~~-MlG-SY~P-~~e~y~~~~p~EeAPSGmLARG~Y~ak  193 (219)
T 1doa_B          117 FVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY-MVG-SYGP-RAEEYEFLTPMEEAPKGMLARGSYNIK  193 (219)
T ss_dssp             EEEETTCEEEEEEEECBCSSCEEEEEEEEEEEETTEEEEEEEE-EEE-EECC-CSSCEEEECCCEECCCTTSCCSEEEEE
T ss_pred             EEecCCCEEEEEEEEEEecceecCcEEEEEEEECCeEECCcce-eee-ccCC-CCCcccccCCCccCCccceeeeeeeee
Confidence            335678889999999998776666 444445667877622211 111 0112 11246665432 3443 4567999999


Q ss_pred             EEEEeCCCCEEEEEEEEEEEccc
Q 031870          123 MKMIGKNGYQLTCFSFKFKIGFG  145 (151)
Q Consensus       123 ~~l~d~~~~~i~C~~~~~~i~~~  145 (151)
                      -++.|+++....=++-.|+|...
T Consensus       194 SkF~DDD~~~hL~~eWsfeI~Kd  216 (219)
T 1doa_B          194 SRFTDDDRTDHLSWEWNLTIKKE  216 (219)
T ss_dssp             EEEECTTCCCCEEEEEEEEEESS
T ss_pred             EEEEeCCCceEEEEEEEEEEecC
Confidence            99999888877778888888753

>1lyq_A PCOC copper resistance protein; beta barrel, IG domain, metal binding protein; 1.50A {Escherichia coli} SCOP: b.1.18.17 PDB: 1ix2_A

Probab=90.08  E-value=0.77  Score=29.94  Aligned_cols=27  Identities=11%  Similarity=0.224  Sum_probs=21.4

Q ss_pred             EEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870          106 HAETLPGYTPPGVYTLKMKMIGKNGYQL  133 (151)
Q Consensus       106 ~~~~ip~~~P~g~y~v~~~l~d~~~~~i  133 (151)
                      +.+.++ .+++|.|+|+|+....||..+
T Consensus        69 ~~~~l~-~L~~G~YtV~WrvvS~DGH~~   95 (104)
T 1lyq_A           69 VIIPRE-PLPAGTYRVDWRAVSSDTHPI   95 (104)
T ss_dssp             EEEESS-CCCSEEEEEEEEECCTTSCCE
T ss_pred             EEEECC-CCCCceEEEEEEEEecCCCcc
Confidence            344566 678999999999998888754

>2c9r_A COPC, copper resistance protein C; copper transport, copper proteins, copper dissociation const metal-binding, electron transport; 2.0A {Pseudomonas syringae PV} PDB: 1m42_A 1nm4_A 1ot4_A 2c9p_A 2c9q_A

Probab=89.46  E-value=0.94  Score=29.36  Aligned_cols=27  Identities=7%  Similarity=0.281  Sum_probs=21.2

Q ss_pred             EEEEeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870          106 HAETLPGYTPPGVYTLKMKMIGKNGYQL  133 (151)
Q Consensus       106 ~~~~ip~~~P~g~y~v~~~l~d~~~~~i  133 (151)
                      +.+.++ .+++|.|+|+|+....||..+
T Consensus        67 ~~~~l~-~L~~G~YtV~WrvvS~DGH~~   93 (102)
T 2c9r_A           67 VITPAS-PLTAGTYKVDWRAVSSDTFPI   93 (102)
T ss_dssp             EEEESS-CCCSEEEEEEEEECCTTCCCE
T ss_pred             EEEECC-CCCCceEEEEEEEEecCCCcc
Confidence            344455 678999999999998888764

>2vtc_A CEL61B, cellulase; hydrolase, glycoside; HET: NAG; 1.6A {Hypocrea jecorina}

Probab=89.29  E-value=1.5  Score=33.15  Aligned_cols=42  Identities=19%  Similarity=0.385  Sum_probs=32.0

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEE-----eC-CCCE--EEEEEEEEEEcccc
Q 031870          105 SHAETLPGYTPPGVYTLKMKMI-----GK-NGYQ--LTCFSFKFKIGFGA  146 (151)
Q Consensus       105 ~~~~~ip~~~P~g~y~v~~~l~-----d~-~~~~--i~C~~~~~~i~~~~  146 (151)
                      ++++.||+.+|+|+|-+++++.     ++ .|.+  +.|..+.|+=..+.
T Consensus       160 ~~~~tIP~~l~~G~YLlR~E~iALH~a~~~ggaQfY~~Caqi~VtG~G~~  209 (249)
T 2vtc_A          160 KWTVKIPSSLRPGNYVFRHELLAAHGASSANGMQNYPQCVNIAVTGSGTK  209 (249)
T ss_dssp             EEEEECCTTBCSEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEESSCCB
T ss_pred             eeEEEcCCCCCCcceEEEEEeeeccccccCCCceechhhEEEEEccCCCC
Confidence            4566799999999999999987     33 3445  69999998754443

>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}

Probab=83.82  E-value=1.8  Score=29.15  Aligned_cols=86  Identities=7%  Similarity=-0.024  Sum_probs=54.7

Q ss_pred             EEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCC-cCCCCCCCC-cEEEEEEEEeCCCC----
Q 031870           41 IKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICE-EVSCPIEAG-NFVLSHAETLPGYT----  114 (151)
Q Consensus        41 ~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~-~~~CPv~~G-~~~~~~~~~ip~~~----  114 (151)
                      ++.+|-.+..|+.+++++.........++...|.+++++   |......=. ..-=++.+| .-+.++++.++...    
T Consensus         5 is~sP~~p~~g~~vTvsatVkN~Gt~~s~a~~V~~yl~~---p~~gg~~vgt~tv~~LaaG~s~t~~v~~~~~~~~~~~a   81 (122)
T 2kut_A            5 ITLSKETPFEGEEITVSARVTNRGAAEAHNVPVAVYLGN---PAQGGVEIGRDTISRIPVGGTGLARVQWKATRKLAGRA   81 (122)
T ss_dssp             EECCTTSCCTTCEEEEEEEEECCSSSCBCCCCEEECSSC---TTTCCCCCBCCCCSCBCTTCEEECCEEEECCCCCSSCC
T ss_pred             eecCCCCCCCCCeEEEEEEEEeCCCcccCcEEEEEEeCC---CccCCeEEeeEEccccCCCCeEEEEEEEecCCcccccc
Confidence            566788899999999999888766665555566665555   110000000 012368899 67767777777431    


Q ss_pred             CCeEEEEEEEEEeCCC
Q 031870          115 PPGVYTLKMKMIGKNG  130 (151)
Q Consensus       115 P~g~y~v~~~l~d~~~  130 (151)
                      -.|.|+++..+ |.++
T Consensus        82 ~~Gsy~v~AvV-D~~n   96 (122)
T 2kut_A           82 ANPGVPVYAVV-DPDN   96 (122)
T ss_dssp             SCCCCCCCEEE-CCTT
T ss_pred             cCceEEEEEEE-cCCC
Confidence            13999999977 4444

>3eja_A Protein GH61E; beta sandwich, fibronectin type III fold, metal site, magnes unknown function; HET: NAG; 1.90A {Thielavia terrestris} PDB: 3eii_A*

Probab=83.31  E-value=4.6  Score=29.60  Aligned_cols=40  Identities=30%  Similarity=0.504  Sum_probs=30.4

Q ss_pred             EEEEEEeCCCCCCeEEEEEEEEEeC------CCCE--EEEEEEEEEEc
Q 031870          104 LSHAETLPGYTPPGVYTLKMKMIGK------NGYQ--LTCFSFKFKIG  143 (151)
Q Consensus       104 ~~~~~~ip~~~P~g~y~v~~~l~d~------~~~~--i~C~~~~~~i~  143 (151)
                      .+.++.||+.+|+|.|-+|.++..=      .|.+  +.|+++.|+=.
T Consensus       117 ~~~~~~iP~~l~~G~YllR~E~ialh~a~~~~~~qfY~~Caqi~Vtg~  164 (208)
T 3eja_A          117 SSFAVPIPPCIKSGYYLLRAEQIGLHVAQSVGGAQFYISCAQLSVTGG  164 (208)
T ss_dssp             CEEEEECCSSBCSEEEEEEEEEEECTTTTSTTCCEEEEEEEEEEEESC
T ss_pred             CceEEeccCCCCCcceEEEeeeeeecccccCCCCcccccceEEEEeCC
Confidence            3456779999999999999887652      2344  69999998743

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1

Probab=82.83  E-value=8.6  Score=26.17  Aligned_cols=46  Identities=17%  Similarity=0.327  Sum_probs=33.8

Q ss_pred             CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      +.|| .|+|+-...++  .|.|.....+++.+++|+.+-+---.|.+..
T Consensus        75 L~PGe~F~YtSg~~L~--Tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~  121 (134)
T 1tza_A           75 IPPNTAYQYTSGTVLD--TPFGIMYGTYGMVSESGEHFNAIIKPFRLAT  121 (134)
T ss_dssp             ECTTEEEEEEEEEEES--SSEEEEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             CCCCCceEEcCCcCcC--CCceEEEEEEEEEECCCCEEEEECCCeEccC
Confidence            4788 67777776776  5789999999999988987655554555543

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1

Probab=82.59  E-value=8.8  Score=26.30  Aligned_cols=46  Identities=24%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      ++|| .|+|+-...++  .|.|.....+++.+++|+.+-+---.|.+..
T Consensus        80 L~PGe~F~YtSg~~L~--Tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~  126 (139)
T 1xq4_A           80 LAPGETFEYTSGCPLP--TPIGTMRGTYHCVGENGIPFEVPIAEFLLAM  126 (139)
T ss_dssp             ECTTCEEEEEEEEEES--SSEEEEEEEEEEEETTSCEEEEEEEEEEEEC
T ss_pred             CCCCCceEEcCCcCcC--CCceEEEEEEEEEeCCCCEEEEECCCeEcCC
Confidence            4788 67777777776  4789999999999988987655555555544

>4eir_A Polysaccharide monooxygenase-2; GH61, PMO, cellulase, biofuels copper monooxygenase, peroxide, superoxide, CBP21, beta-SAN fold, secreted; HET: HIC NAG GOL; 1.10A {Neurospora crassa}

Probab=82.31  E-value=5.9  Score=29.34  Aligned_cols=40  Identities=30%  Similarity=0.547  Sum_probs=30.0

Q ss_pred             EEEEEeCCCCCCeEEEEEEEEEeC------CCCE--EEEEEEEEEEcc
Q 031870          105 SHAETLPGYTPPGVYTLKMKMIGK------NGYQ--LTCFSFKFKIGF  144 (151)
Q Consensus       105 ~~~~~ip~~~P~g~y~v~~~l~d~------~~~~--i~C~~~~~~i~~  144 (151)
                      +.++.||+.+|+|.|-+|.++..=      .|.+  +.|+++.|+=..
T Consensus       133 ~~~~~iP~~l~~G~YllR~E~Ialh~a~~~g~~qfY~~Caqi~VtG~g  180 (223)
T 4eir_A          133 RHSIKIPECIAPGQYLLRAEMIALHAASNYPGAQFYMECAQLNVVGGT  180 (223)
T ss_dssp             EEEEECCTTSCCEEEEEEEEEEECTTCSSSSCCEEEEEEEEEEEESCC
T ss_pred             eEEEECCCCCCCCceEEEEeeeeccccccCCCCcccccceEEEEeCCC
Confidence            345679999999999999887642      2334  699999987443

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}

Probab=81.74  E-value=9.6  Score=25.63  Aligned_cols=46  Identities=17%  Similarity=0.286  Sum_probs=33.7

Q ss_pred             CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      ++|| .|+|+-...++  .|.|.....+++.+++|+.+-+---.|.+..
T Consensus        76 L~PGe~f~YtSg~~L~--tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~  122 (127)
T 2f1e_A           76 LRPGEAFHYTSGVLLE--TEQGQMQGHYDMVADDGTEFIAPIAAFVLSV  122 (127)
T ss_dssp             ECTTCEEEEEEEEEES--SSCEEEEEEEEEEETTCCEEEEEEEEEEEC-
T ss_pred             CCCCCceEEeCCcCcC--CCcEEEEEEEEEEECCCCEEEEECCceEcCC
Confidence            4788 68887777776  5789999999999988987655555555543

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1

Probab=81.70  E-value=9.3  Score=25.70  Aligned_cols=46  Identities=28%  Similarity=0.400  Sum_probs=33.5

Q ss_pred             CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           97 IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        97 v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      ++|| .|+|+-...++  .|.|.....+++.+++|+.+-+---.|.+..
T Consensus        75 L~PGe~f~YtSg~~L~--tp~G~M~G~y~m~~~~G~~F~v~Ip~F~L~~  121 (126)
T 1xvs_A           75 IKANDEYTYSSGTALD--TPVGVMQGQYLMIDEQGESFTVEIEPFRLAV  121 (126)
T ss_dssp             ECTTCEEEEEEEEEES--SSEEEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             CCCCCceEEeCCcCcC--CCcEEEEEEEEEEECCCCEEEEECCceEcCC
Confidence            4678 67777777776  5789999999999988986655544555543

>2l0d_A Cell surface protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Methanosarcina acetivorans}

Probab=81.02  E-value=9.5  Score=25.11  Aligned_cols=84  Identities=15%  Similarity=0.141  Sum_probs=54.5

Q ss_pred             cEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCC
Q 031870           35 PLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGY  113 (151)
Q Consensus        35 ~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~  113 (151)
                      .+.++++  +|-.+..|+.++|++..........+...+.++++|-.+-...-+       -+.+| .-+..+++.  +.
T Consensus         4 DL~vt~i--tP~~~~~~~~~ti~atVkN~G~~~a~~~~V~ly~~g~~v~t~~v~-------~LaaG~s~tv~~~w~--~~   72 (114)
T 2l0d_A            4 DLVPVSL--TPVTVVPNTVNTMTATIENQGNKDSTSFNVSLLVDGIVVDTQTVT-------SLESENSTNVDFHWT--LD   72 (114)
T ss_dssp             CEEEEEE--ECSEECTTSEEEEEEEEEECSSSCBCCEEEEEEETTEEEEEEEES-------CBCBTCEEEEEEEEE--CC
T ss_pred             CcEEEec--cCCCcCCCCeEEEEEEEEECCCCCCCCEEEEEEECCEEEcceecc-------cccCCCEEEEEEEEe--ec
Confidence            3566666  566688999999999999877777777888888888654222111       14677 444554432  11


Q ss_pred             CCCeEEEEEEEEEeCCC
Q 031870          114 TPPGVYTLKMKMIGKNG  130 (151)
Q Consensus       114 ~P~g~y~v~~~l~d~~~  130 (151)
                      ...|.|++++.. |.++
T Consensus        73 ~~~G~ytl~a~V-D~~n   88 (114)
T 2l0d_A           73 GTANSYTLTVNV-DPEN   88 (114)
T ss_dssp             CSCSEEEEEEEE-CTTC
T ss_pred             CcCceEEEEEEE-CCCC
Confidence            136899999976 4443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	151
d2ag4a1	163	b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator	7e-19
d1nepa_	130	b.1.18.7 (A:) Epididymal secretory protein E1 (Nie	1e-16
d1xwva_	129	b.1.18.7 (A:) Major mite allergen {House-dust mite	3e-13

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]} Length = 163

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 76.2 bits (187), Expect = 7e-19
 Identities = 25/164 (15%), Positives = 52/164 (31%), Gaps = 43/164 (26%)

Query: 18  IQAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG---KVMIE 74
           + +  +  C   DE   P  ++ + + PDP+V       ++   T   +S      +++E
Sbjct: 1   MSSFSWDNC---DEGKDPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLE 57

Query: 75  VRYFGIRVHS---------ETHDICEE---------------------VSCPIEAGNFVL 104
               G+ +                C+                        CP + G + L
Sbjct: 58  KEVAGLWIKIPCTDYIGSCTFEHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSL 117

Query: 105 SHAET------LPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKI 142
             +E       LP +   G Y ++   +  +G +L C      +
Sbjct: 118 PKSEFVVPDLELPSWLTTGNYRIESV-LSSSGKRLGCIKIAASL 160

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.2 bits (169), Expect = 1e-16
 Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 4/128 (3%)

Query: 19  QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYF 78
           + + F  CG +      + V      P  +  G+    N++  ++      K ++     
Sbjct: 1   EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVM 60

Query: 79  GIRVHSETHDICEE---VSCPIEAGNFVLSHAE-TLPGYTPPGVYTLKMKMIGKNGYQLT 134
           GI V     +       + CPIE         +  +    P     ++ ++      +  
Sbjct: 61  GIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFF 120

Query: 135 CFSFKFKI 142
           C+    ++
Sbjct: 121 CWQIPIEV 128

>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]} Length = 129

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]

 Score = 60.7 bits (147), Expect = 3e-13
 Identities = 21/132 (15%), Positives = 47/132 (35%), Gaps = 17/132 (12%)

Query: 21  IDFTYCGQYDEENFPLKVQQIKI------IPDPVVTGKPAIFNISAVTDRSVSGGKVMIE 74
           +D   C          +++++ +       P  +  GKP         +++    K+ I+
Sbjct: 3   VDVKDCANN-------EIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIK 55

Query: 75  VRYFGIRVH--SETHDICEEVSCPIEAG-NFVLSHAETLPGYTPPGV-YTLKMKMIGKNG 130
               G+ +       + C  + CP+  G  +   +   +P   P      + +K++G NG
Sbjct: 56  ASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNG 115

Query: 131 YQLTCFSFKFKI 142
                 +   KI
Sbjct: 116 VLACAIATHAKI 127

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	151
d1nepa_	130	Epididymal secretory protein E1 (Niemann-Pick C2 p	100.0
d1xwva_	129	Major mite allergen {House-dust mite (Dermatophago	99.96
d2ag4a1	163	Ganglioside M2 (gm2) activator {Human (Homo sapien	99.88
d1w8oa1	103	Sialidase, "linker" domain {Micromonospora viridif	96.53
d1kmta_	138	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	94.79
d1ds6b_	179	Rho GDP-dissociation inhibitor 1, RhoGDI {Human (H	94.39
d1g0da1	135	Transglutaminase N-terminal domain {Red sea bream	93.51
d1ix2a_	102	Copper resistance protein C (CopC, PcoC) {Escheric	91.61
d2c9qa1	102	Copper resistance protein C (CopC, PcoC) {Pseudomo	89.93
d1vjja1	140	Transglutaminase N-terminal domain {Human (Homo sa	87.57
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	85.94

>d1nepa_ b.1.18.7 (A:) Epididymal secretory protein E1 (Niemann-Pick C2 protein) {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Epididymal secretory protein E1 (Niemann-Pick C2 protein)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=8.5e-33  Score=192.41  Aligned_cols=126  Identities=15%  Similarity=0.313  Sum_probs=115.2

Q ss_pred             cccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEE--cccCCCCCCc-CCC
Q 031870           19 QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRV--HSETHDICEE-VSC   95 (151)
Q Consensus        19 ~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v--~~~~~d~C~~-~~C   95 (151)
                      +.++|++||++.+....++|++|+..||+++||++++++++|+++++++++++++.++++|+++  +..+.|+|+. ++|
T Consensus         1 e~v~f~~Cg~~~~~~~~v~I~~C~~~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gi~ip~p~~~~d~C~~g~~C   80 (130)
T d1nepa_           1 EPVKFKDCGSWVGVIKEVNVSPCPTQPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRC   80 (130)
T ss_dssp             CBCCCEESCCCSEEEEEEEEESCSSSSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCS
T ss_pred             CCcceEeCCCCCCcEEEEEEeCCCCCCCEeeCCCEEEEEEEEEcCcccceEEEEEEEEECCEEecccCCCCcccccCCcC
Confidence            3578999998544567899999999999999999999999999999999999999999999866  4567899985 899


Q ss_pred             CCCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           96 PIEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        96 Pv~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      |+++| .|+|+++++|++.+|.++|+++|+|+|++|+.++||+++++|.+
T Consensus        81 Pl~~G~~~~y~~~~~I~~~~P~~~~~v~~~l~d~~~~~i~Cf~v~~~I~~  130 (130)
T d1nepa_          81 PIEKDKTYNYVNKLPVKNEYPSIKVVVEWELTDDKNQRFFCWQIPIEVEA  130 (130)
T ss_dssp             SBCTTCEEEEEEEEECCTTSCSSEEEEEEEEECTTSCEEEEEEEEEEEEC
T ss_pred             CccCCceEEEEEEEEcchhhccEEEEEEEEEEcCCCCEEEEEEEeeEEEC
Confidence            99999 79999999999999999999999999999999999999999974

>d1xwva_ b.1.18.7 (A:) Major mite allergen {House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: ML domain
domain: Major mite allergen
species: House-dust mite (Dermatophagoides farinae), Der f 2 [TaxId: 6954]

Probab=99.96  E-value=2.2e-29  Score=174.74  Aligned_cols=122  Identities=19%  Similarity=0.331  Sum_probs=110.5

Q ss_pred             ccceeecCCCCCCCccEEEeEEE-eeCCCCCCCCcEEEEEEEEEceeecCeEEEEEEEEceEEE--cccCCCCCCcCCCC
Q 031870           20 AIDFTYCGQYDEENFPLKVQQIK-IIPDPVVTGKPAIFNISAVTDRSVSGGKVMIEVRYFGIRV--HSETHDICEEVSCP   96 (151)
Q Consensus        20 ~~~~~~C~~~~~~~~~v~I~~~~-~~Pc~~~~G~~~~i~~~~~~~~~i~~~~~~v~~~~~~~~v--~~~~~d~C~~~~CP   96 (151)
                      .++|++||+  +....++|++|+ ..||.++||++++++++|++++++++.++++.++++|+++  |..+.|+|++++||
T Consensus         2 ~v~~~~Cg~--g~~~~V~V~~C~~~~PC~l~rG~~~~~~~~F~~~~d~~~l~~~v~~~~~gv~vP~p~~~~daC~~~~CP   79 (129)
T d1xwva_           2 QVDVKDCAN--NEIKKVMVDGCHGSDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCP   79 (129)
T ss_dssp             BBCCEESSS--SCEEEEEETTCCBTSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSS
T ss_pred             cceeEECCC--CCEEEEEECCCCCCCCCEEECCCeEEEEEEEEcCcccceEEEEEEEEECCEEecCcccCcCCCCCccCC
Confidence            578999998  467899999998 5799999999999999999999999999999999999866  46678999999999


Q ss_pred             CCCC-cEEEEEEEEeCCCCCCe-EEEEEEEEEeCCCCEEEEEEEEEEEc
Q 031870           97 IEAG-NFVLSHAETLPGYTPPG-VYTLKMKMIGKNGYQLTCFSFKFKIG  143 (151)
Q Consensus        97 v~~G-~~~~~~~~~ip~~~P~g-~y~v~~~l~d~~~~~i~C~~~~~~i~  143 (151)
                      +++| +|+|+++++|++.+|.+ .++++|+|.|++|..+.|+.|+++|+
T Consensus        80 l~~G~~~~y~~~~~V~~~~P~v~~v~v~~~L~~~~g~~~C~~~~~~~i~  128 (129)
T d1xwva_          80 LVKGQQYDAKYTWNVPKIAPKSENVVVTVKLVGDNGVLACAIATHAKIR  128 (129)
T ss_dssp             BCTTCEEEEEEEEECCTTSCCBSCEEEEEEEEETTEEEEEEEECCEEEE
T ss_pred             ccCCeEEEEEEEeEccccCCCceEEEEEEEEECCCCeEEEEEEEEEEEe
Confidence            9999 89999999999999999 69999999997775555589999986

>d2ag4a1 b.95.1.1 (A:2-164) Ganglioside M2 (gm2) activator {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Ganglioside M2 (gm2) activator
superfamily: Ganglioside M2 (gm2) activator
family: Ganglioside M2 (gm2) activator
domain: Ganglioside M2 (gm2) activator
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.8e-22  Score=144.41  Aligned_cols=122  Identities=21%  Similarity=0.490  Sum_probs=98.4

Q ss_pred             cccceeecCCCCCCCccEEEeEEEeeCCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEE--ce--EEEccc------C-
Q 031870           19 QAIDFTYCGQYDEENFPLKVQQIKIIPDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRY--FG--IRVHSE------T-   86 (151)
Q Consensus        19 ~~~~~~~C~~~~~~~~~v~I~~~~~~Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~--~~--~~v~~~------~-   86 (151)
                      +++.|++|++   ..+.++|++++++|+|+.+|++++++++++.+++++++ ++++.+++  ++  +++|-.      + 
T Consensus         2 ~~f~w~nC~~---~~d~~~i~~l~l~PdP~~~gg~lti~~~~~~~~~i~~~~~v~l~v~k~~~~~~i~iPC~~~~GSC~y   78 (163)
T d2ag4a1           2 SSFSWDNCDE---GKDPAVIRSLTLEPDPIVVPGNVTLSVVGSTSVPLSSPLKVDLVLEKEVAGLWIKIPCTDYIGSCTF   78 (163)
T ss_dssp             CCCEEEESST---TTCSEEEEEEEEESSSEEESEEEEEEEEEEESSCBCSSCEEEEEEEEEETTEEEECBCBTTBSBCEE
T ss_pred             CceEeccCCC---CCCceEEeeEEEecCCcCCCceEEEEEEEEEeeecCCCcEEEEEEEEEeccEEEEeeeecccccccc
Confidence            5688999987   35789999999999999999999999999999999998 56666554  33  244421      1 


Q ss_pred             CCCCC-------------cC--------CCCCCCCcEEEEEE------EEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEE
Q 031870           87 HDICE-------------EV--------SCPIEAGNFVLSHA------ETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFK  139 (151)
Q Consensus        87 ~d~C~-------------~~--------~CPv~~G~~~~~~~------~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~  139 (151)
                      .|+|+             ..        +||+++|+|+++.+      +.+|+++|+|+|++++.+ +++|++++|+++.
T Consensus        79 ~d~C~~~~~~~~~~~~c~~~~~~~~~~c~CPi~~G~y~l~~s~~~ip~v~LP~~l~~G~Y~v~~~~-~~~g~~l~Ci~~~  157 (163)
T d2ag4a1          79 EHFCDVLDMLIPTGEPCPEPLRTYGLPCHCPFKEGTYSLPKSEFVVPDLELPSWLTTGNYRIESVL-SSSGKRLGCIKIA  157 (163)
T ss_dssp             CCHHHHHHHHSCTTSCCCTTHHHHTCCCSSCBCSEEEEEEEEEEEECCCCCCTTCSSEEEEEEEEE-EETTEEEEEEEEE
T ss_pred             hhhhhhHhhcccccccCcchhhccCCcccCCcCCcEEEecceeeccccccccCccCCceEEEEEEE-eCCCCEEEEEEEE
Confidence            24454             21        79999999998775      357888999999999998 5589999999999


Q ss_pred             EEEcc
Q 031870          140 FKIGF  144 (151)
Q Consensus       140 ~~i~~  144 (151)
                      ++|..
T Consensus       158 ~slk~  162 (163)
T d2ag4a1         158 ASLKG  162 (163)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99863

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: E-set domains of sugar-utilizing enzymes
domain: Sialidase, "linker" domain
species: Micromonospora viridifaciens [TaxId: 1881]

Probab=96.53  E-value=0.011  Score=37.37  Aligned_cols=75  Identities=15%  Similarity=0.246  Sum_probs=54.2

Q ss_pred             CCCCCcEEEEEEEEEceee--cCeEEEEEEEEceEEEcccCCCCCCcCCCCCCCC-cEEEEEEEEeCCCCCCeEEEEEEE
Q 031870           48 VVTGKPAIFNISAVTDRSV--SGGKVMIEVRYFGIRVHSETHDICEEVSCPIEAG-NFVLSHAETLPGYTPPGVYTLKMK  124 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i--~~~~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G-~~~~~~~~~ip~~~P~g~y~v~~~  124 (151)
                      +..|+.+++++..+.....  ....+.+.+ =.||.+....        =++.|| ..+.++++.+|...+.|.|.++++
T Consensus        13 v~pG~~~~~~vtVtN~g~~~~~~~~~~~~~-P~GW~v~~~~--------~~L~pG~s~~~~~~Vt~p~~a~~G~Y~i~~~   83 (103)
T d1w8oa1          13 LEPGQQVTVPVAVTNQSGIAVPKPSLQLDA-SPDWQVQGSV--------EPLMPGRQAKGQVTITVPAGTTPGRYRVGAT   83 (103)
T ss_dssp             ECTTCEEEEEEEEECCSSSCBSSCEEEEEC-CTTSEEEEEE--------CCBCTTCEEEEEEEEECCTTCCCEEEEEEEE
T ss_pred             eCCCCeEEEEEEEEeCCCCceeeeeEEEcC-CCCccccCcc--------eeeCCCCcEEEEEEEECCCCCCCceEEEEEE
Confidence            5569999999999875433  333344432 3567653211        147899 799999999999999999999999


Q ss_pred             EEeCCCC
Q 031870          125 MIGKNGY  131 (151)
Q Consensus       125 l~d~~~~  131 (151)
                      +.+.++.
T Consensus        84 a~~~~~~   90 (103)
T d1w8oa1          84 LRTSAGN   90 (103)
T ss_dssp             EEETTEE
T ss_pred             EEeCCcc
Confidence            9976554

>d1kmta_ b.1.18.8 (A:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.092  Score=34.65  Aligned_cols=97  Identities=13%  Similarity=0.211  Sum_probs=63.7

Q ss_pred             CCCCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEE
Q 031870           45 PDPVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTL  121 (151)
Q Consensus        45 Pc~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v  121 (151)
                      |-.++-|...++++.|.+++++-+| +..-.++-.|+++-.... ..+ .-+|-. ..|++.... ..|+ ++-.|.|++
T Consensus        37 ~f~IKEGs~Y~i~i~F~V~~eivsGLky~q~v~r~Gi~Vdk~~~-mvG-sy~P~~-e~y~~~~p~eeaPsG~laRG~Y~a  113 (138)
T d1kmta_          37 SFVLKEGVEYRIKISFRVNREIVSGMKYIQHTYRKGVKIDKTDY-MVG-SYGPRA-AAYEFLTPVEEAPKGMLARGSYSI  113 (138)
T ss_dssp             CEEEETTCEEEEEEEEEECSSCEEEEEEEEEEEETTEEEEEEEE-EEE-EECCCS-SCEEEECCCEECCCSTTTCEEEEE
T ss_pred             CEEecCCCEEEEEEEEEEccccccCcEEEEEEEECCEEEcceeE-eee-ccCCCC-CcEEEeCCCccCCceEEEeeeeeE
Confidence            4457789999999999999886665 544455667887622211 111 112222 246665432 3443 456799999


Q ss_pred             EEEEEeCCCCEEEEEEEEEEEcc
Q 031870          122 KMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus       122 ~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      +-++.|+++....=++..++|..
T Consensus       114 ~s~f~Ddd~~~~l~~~w~feI~K  136 (138)
T d1kmta_         114 KSRFTDDDKTDHLSWEWNLTIKK  136 (138)
T ss_dssp             EEEEECTTCCCSEEEEEEEEEES
T ss_pred             EEEEEcCCCcEEEEEEEEEEEec
Confidence            99999988877777788888765

>d1ds6b_ b.1.18.8 (B:) Rho GDP-dissociation inhibitor 1, RhoGDI {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: RhoGDI-like
domain: Rho GDP-dissociation inhibitor 1, RhoGDI
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.39  E-value=0.092  Score=36.15  Aligned_cols=94  Identities=15%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CCCCCcEEEEEEEEEceeecCe-EEEEEEEEceEEEcccCCCCCCcCCCCCCCCcEEEEEEE-EeCC-CCCCeEEEEEEE
Q 031870           48 VVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGIRVHSETHDICEEVSCPIEAGNFVLSHAE-TLPG-YTPPGVYTLKMK  124 (151)
Q Consensus        48 ~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~~v~~~~~d~C~~~~CPv~~G~~~~~~~~-~ip~-~~P~g~y~v~~~  124 (151)
                      ++-|...++++.|.+++++-+| +..-.++-.|+++-.... ..+. -.|-. -.|++.+.. ..|+ ++-.|.|+++.+
T Consensus        80 IKEGs~Y~i~i~F~V~~eivsGLkY~q~vkr~Gi~Vdk~~~-mlGs-y~P~~-e~y~~~~p~eeaPsG~laRG~Y~a~s~  156 (179)
T d1ds6b_          80 LKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATF-MVGS-YGPRP-EEYEFLTPVEEAPKGMLARGTYHNKSF  156 (179)
T ss_dssp             EETTCEEEEEEEECCCSSCEEEEEEEEEEEETTEEEEEEEE-EEEE-ECCCS-SCEEEECCCEECCCSTTTCEEEEEEEE
T ss_pred             ecCCCEEEEEEEEEEecccccCcEEEEEEEECCEEEcceeE-eeec-cCCCC-CceeEeCCCccCCceeEEeecceEEEE
Confidence            6678889999999998886555 554455667887622211 1111 11211 135554432 3443 456799999999


Q ss_pred             EEeCCCCEEEEEEEEEEEcc
Q 031870          125 MIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus       125 l~d~~~~~i~C~~~~~~i~~  144 (151)
                      +.|+++....=++..++|..
T Consensus       157 F~DDD~~~~l~~~w~feI~K  176 (179)
T d1ds6b_         157 FTDDDKQDHLSWEWNLSIKK  176 (179)
T ss_dssp             EECTTCCCCEEEEEEEEEES
T ss_pred             EEcCCCcEEEEEEEEEEEec
Confidence            99988887777888888865

>d1g0da1 b.1.18.9 (A:6-140) Transglutaminase N-terminal domain {Red sea bream (Chrysophrys major) [TaxId: 143350]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Red sea bream (Chrysophrys major) [TaxId: 143350]

Probab=93.51  E-value=0.44  Score=30.99  Aligned_cols=81  Identities=15%  Similarity=0.119  Sum_probs=50.3

Q ss_pred             CCCCCCcEEEEEEEEEceeecCe-EEEEEEEEce---E--EEcccCCC-CCCcCCCCCCCCcEEEEEEEEeCCCCCCeEE
Q 031870           47 PVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFG---I--RVHSETHD-ICEEVSCPIEAGNFVLSHAETLPGYTPPGVY  119 (151)
Q Consensus        47 ~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~---~--~v~~~~~d-~C~~~~CPv~~G~~~~~~~~~ip~~~P~g~y  119 (151)
                      .++||+.++|.+.|  ++..+.. .+.+.+..|-   .  ++.....+ -+-. ..=...|. +.+.++..|+..|-|+|
T Consensus        28 IVRRGQ~F~i~l~f--~R~~~~~d~l~l~~~~G~~p~~~~~~~~~~~~~~~w~-a~~~~~~~-~v~vsV~spa~A~VG~y  103 (135)
T d1g0da1          28 IVRRGQPFSITLQC--SDSLPPKHHLELVLHLGKRDEVVIKVQKEHGARDKWW-FNQQGAQD-EILLTLHSPANAVIGHY  103 (135)
T ss_dssp             EEETTSCEEEEEEE--SSCCCTTCEEEEEEEESTTCSEEEEEBSSSCCSSSCE-EEEEECSS-EEEEEEECCTTCCCEEE
T ss_pred             EEECCCeEEEEEEe--cCCCCCCccEEEEEEECCCCcEEcccccccCCCCcce-EEEEcCCC-EEEEEEeCCCCCeEEEE
Confidence            47899999999999  4555543 3666666654   1  22221111 1111 11112343 46788889999999999


Q ss_pred             EEEEEEEeCCCC
Q 031870          120 TLKMKMIGKNGY  131 (151)
Q Consensus       120 ~v~~~l~d~~~~  131 (151)
                      ++.++....+|.
T Consensus       104 ~L~v~~~~~~~~  115 (135)
T d1g0da1         104 RLAVLVMSPDGH  115 (135)
T ss_dssp             EEEEEEECTTSC
T ss_pred             EEEEEEEecCCc
Confidence            999998755554

>d1ix2a_ b.1.18.17 (A:) Copper resistance protein C (CopC, PcoC) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Copper resistance protein C (CopC, PcoC)
domain: Copper resistance protein C (CopC, PcoC)
species: Escherichia coli [TaxId: 562]

Probab=91.61  E-value=0.3  Score=29.96  Aligned_cols=32  Identities=16%  Similarity=0.335  Sum_probs=23.5

Q ss_pred             EeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEE
Q 031870          109 TLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFK  141 (151)
Q Consensus       109 ~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~  141 (151)
                      ...+.+++|.|+|.|++...||..+- -.+.|.
T Consensus        69 ~~~~~l~~G~Y~V~wrv~s~DGH~~~-G~~~F~  100 (102)
T d1ix2a_          69 IPREPLPAGTYRVDWRAVSSDTHPIT-GNYTFT  100 (102)
T ss_dssp             EESSCCCSEEEEEEEEECCTTCCCEE-EEEEEE
T ss_pred             eccCCCCCceEEEEEEEEcCCCCeec-cEEEEE
Confidence            34566788999999999998888652 334433

>d2c9qa1 b.1.18.17 (A:1-102) Copper resistance protein C (CopC, PcoC) {Pseudomonas syringae [TaxId: 317]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Copper resistance protein C (CopC, PcoC)
domain: Copper resistance protein C (CopC, PcoC)
species: Pseudomonas syringae [TaxId: 317]

Probab=89.93  E-value=0.43  Score=29.15  Aligned_cols=25  Identities=12%  Similarity=0.266  Sum_probs=20.7

Q ss_pred             EeCCCCCCeEEEEEEEEEeCCCCEE
Q 031870          109 TLPGYTPPGVYTLKMKMIGKNGYQL  133 (151)
Q Consensus       109 ~ip~~~P~g~y~v~~~l~d~~~~~i  133 (151)
                      ..+..+++|.|+|.|++...||..+
T Consensus        69 ~~~~~l~~G~Y~V~wrvvs~DGH~~   93 (102)
T d2c9qa1          69 TPASPLTAGTYKVDWRAVSSDTHPI   93 (102)
T ss_dssp             EESSCCCSEEEEEEEEECCTTCCCE
T ss_pred             ecCCCCCCceEEEEEEEEecCCCee
Confidence            4556778999999999999888764

>d1vjja1 b.1.18.9 (A:1-140) Transglutaminase N-terminal domain {Human (Homo sapiens), TGase E3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: E set domains
family: Transglutaminase N-terminal domain
domain: Transglutaminase N-terminal domain
species: Human (Homo sapiens), TGase E3 [TaxId: 9606]

Probab=87.57  E-value=1.4  Score=28.67  Aligned_cols=80  Identities=13%  Similarity=0.148  Sum_probs=47.9

Q ss_pred             CCCCCCcEEEEEEEEEceeecCe-EEEEEEEEceE---------EEcccC-CCCCCcCCCCCCC-CcEEEEEEEEeCCCC
Q 031870           47 PVVTGKPAIFNISAVTDRSVSGG-KVMIEVRYFGI---------RVHSET-HDICEEVSCPIEA-GNFVLSHAETLPGYT  114 (151)
Q Consensus        47 ~~~~G~~~~i~~~~~~~~~i~~~-~~~v~~~~~~~---------~v~~~~-~d~C~~~~CPv~~-G~~~~~~~~~ip~~~  114 (151)
                      .++||+.+++.+.|  ++..+.. .+.+.+..|.-         .+|..+ .+.|=..  =+.. ..-+.+.++..|+..
T Consensus        30 IVRRGQ~F~i~l~f--~R~~~~~d~l~l~~~~Gp~P~~~~gT~~~~p~~~~~~~~W~a--~~~~~~~~~v~v~V~spa~A  105 (140)
T d1vjja1          30 ILRRGQNFQVLMIM--NKGLGSNERLEFIVSTGPYPSESAMTKAVFPLSNGSSGGWSA--VLQASNGNTLTISISSPASA  105 (140)
T ss_dssp             EEETTSCEEEEEEE--SSCCCTTCEEEEEEECSSSCCTTTTSEEEEEEESSCCSSSEE--EEEEEETTEEEEEEECCTTC
T ss_pred             EEeCCCcEEEEEEe--CCCCCCCceEEEEEEeCCCCCcCCCeEEEEecCCCCCCCCEE--EEEecCCCEEEEEEeCCCCC
Confidence            47899999999988  4555544 36666555531         122111 1111110  0000 113567778899999


Q ss_pred             CCeEEEEEEEEEeCCC
Q 031870          115 PPGVYTLKMKMIGKNG  130 (151)
Q Consensus       115 P~g~y~v~~~l~d~~~  130 (151)
                      |-|.|++.++...+.+
T Consensus       106 ~VG~y~L~v~~~s~~~  121 (140)
T d1vjja1         106 PIGRYTMALQIFSQGG  121 (140)
T ss_dssp             CCEEEEEEEEEEETTE
T ss_pred             ceEEEEEEEEEEeCCc
Confidence            9999999999886543

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=85.94  E-value=2.6  Score=27.10  Aligned_cols=49  Identities=18%  Similarity=0.356  Sum_probs=35.5

Q ss_pred             CCC-CCCC-cEEEEEEEEeCCCCCCeEEEEEEEEEeCCCCEEEEEEEEEEEcc
Q 031870           94 SCP-IEAG-NFVLSHAETLPGYTPPGVYTLKMKMIGKNGYQLTCFSFKFKIGF  144 (151)
Q Consensus        94 ~CP-v~~G-~~~~~~~~~ip~~~P~g~y~v~~~l~d~~~~~i~C~~~~~~i~~  144 (151)
                      ..| ++|| .|+|+-...+.  .|.|.....+++.+++|+.+-..--.|.+..
T Consensus        69 ~qPvl~PGe~f~Y~S~~~l~--t~~G~M~G~y~m~~~~g~~F~v~Ip~F~L~~  119 (132)
T d1tzaa_          69 ETPTIPPNTAYQYTSGTVLD--TPFGIMYGTYGMVSESGEHFNAIIKPFRLAT  119 (132)
T ss_dssp             BCCEECTTEEEEEEEEEEES--SSEEEEEEEEEEEETTCCEEEEEEEEEEEEC
T ss_pred             CcCccCCCCCEEEeCCCCcc--CCceEEEEEEEEEECCCCEEEEECCCEECCC
Confidence            455 4789 78888877776  4788899999999988987655544555443