Citrus Sinensis ID: 031904

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
Protein Sequence
MATAAEVETEEETEMMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFAR
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHHHHHccccccccccccccccccEEEEEEccEEEEEEEccccccccccccEEEEHHHHHHHHHHHHHcccccEEccccEEEEEccccccHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHccHHHHHHHHHccccccEEEEEEccccccccHHHHHHHHHHHcccccccccccccccccEEEEEEcccEEEEEEcccccccccccccHHHHHHHHHHHHHHHHcccccEEEcccEEEEEccccccccccccccccccccc
Coil and Loop (DISEMBL)
mataaeveTEEETEMMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGiqqptlskpnafvAQSSLNLRIDAcghslsilqspsslgtpgvtgsvmWDSGVVLGKFLEHAVDSGMLLLHGKKIVElgsgcglvgpfgcssypyrfar
Flexible Loop (DISEMBL)
mataaeveteeeteMMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELgsgcglvgpfgcssypyrfar
Low Complexity Region (SEG)
mataaeveteeetemmKMVKLGSYDGKVRLLIVSGDsesesaaeeTMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFAR
Disordered region (IsUnstruct)
********************LGSYDGKVRLLIV************TMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR***
Disordered Region (DISOPRED)
************************DGK******************TMLLWGIQQPTLS****FV**SSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA*
Disordered Region (DISEMBL)
*************EMMKMVKLGSYDGKVRLLIVSG*********ETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFAR
Disordered Region (DISPRO)
************TEMMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATAAEVETEEETEMMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFAR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	150	2.2.26 [Sep-21-2011]
Q8WXB1	218	Protein-lysine methyltran	yes	no	0.36	0.247	0.387	0.0006

>sp|Q8WXB1|MT21A_HUMAN Protein-lysine methyltransferase METTL21A OS=Homo sapiens GN=METTL21A PE=1 SV=2

 Score = 43.1 bits (100), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 8/62 (12%)

Query: 76  CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGL 135
             H++ I Q    LG      +V+WD+ +VL  +LE     G + L G+  VELG+G GL
Sbjct: 27  ANHTIQIRQDWRHLGV----AAVVWDAAIVLSTYLE----MGAVELRGRSAVELGAGTGL 78

Query: 136 VG 137
           VG
Sbjct: 79  VG 80

Probable methyltransferase.
Homo sapiens (taxid: 9606)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
356559296	271	PREDICTED: uncharacterized protein LOC10	0.773	0.428	0.85	2e-49
357498989	268	Protein FAM119A [Medicago truncatula] gi	0.773	0.432	0.85	2e-49
388492038	268	unknown [Medicago truncatula]	0.773	0.432	0.85	3e-49
255628649	249	unknown [Glycine max]	0.773	0.465	0.833	2e-48
224116486	260	predicted protein [Populus trichocarpa]	0.793	0.457	0.796	3e-48
225454571	268	PREDICTED: methyltransferase-like protei	0.76	0.425	0.754	2e-41
255557122	234	conserved hypothetical protein [Ricinus	0.606	0.388	0.890	2e-40
297842081	309	hypothetical protein ARALYDRAFT_476461 [	0.873	0.423	0.631	1e-36
55978781	170	hypothetical protein AT1G73320 [Arabidop	0.946	0.835	0.585	7e-36
12324311	273	hypothetical protein; 516-1979 [Arabidop	0.886	0.487	0.605	1e-35

>gi|356559296|ref|XP_003547936.1| PREDICTED: uncharacterized protein LOC100306471 [Glycine max]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 111/120 (92%), Gaps = 4/120 (3%)

Query: 18  MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
           MVKLGSY G+VRL +V G+   ESAAEETMLLWGIQQPTLSKPNAFV+Q+SL L +D+CG
Sbjct: 15  MVKLGSYGGEVRL-VVGGE---ESAAEETMLLWGIQQPTLSKPNAFVSQASLQLSLDSCG 70

Query: 78  HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           HSLSILQSPSSLGTPGVTG+VMWDSGVVLGKFLEHAVDSGML+L GKKIVELGSGCGLVG
Sbjct: 71  HSLSILQSPSSLGTPGVTGAVMWDSGVVLGKFLEHAVDSGMLVLQGKKIVELGSGCGLVG 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357498989|ref|XP_003619783.1| Protein FAM119A [Medicago truncatula] gi|355494798|gb|AES76001.1| Protein FAM119A [Medicago truncatula]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 110/120 (91%), Gaps = 4/120 (3%)

Query: 18  MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
           MVKLGSY G V +L+V G+   ESAAEETMLLWGIQQPTLSKPNAFVAQSSL LR+D+CG
Sbjct: 12  MVKLGSYGGSV-MLVVPGE---ESAAEETMLLWGIQQPTLSKPNAFVAQSSLQLRLDSCG 67

Query: 78  HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           HSLSILQSPSSLG PGVTGSVMWDSG+VLGKFLEH+VDSGML+L GKKIVELGSGCGLVG
Sbjct: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVG 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388492038|gb|AFK34085.1| unknown [Medicago truncatula]

 Score =  199 bits (507), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 102/120 (85%), Positives = 110/120 (91%), Gaps = 4/120 (3%)

Query: 18  MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
           MVKLGSY G V +L+V G+   ESAAEETMLLWGIQQPTLSKPNAFVAQSSL LR+D+CG
Sbjct: 12  MVKLGSYGGSV-MLVVPGE---ESAAEETMLLWGIQQPTLSKPNAFVAQSSLQLRLDSCG 67

Query: 78  HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           HSLSILQSPSSLG PGVTGSVMWDSG+VLGKFLEH+VDSGML+L GKKIVELGSGCGLVG
Sbjct: 68  HSLSILQSPSSLGKPGVTGSVMWDSGIVLGKFLEHSVDSGMLVLQGKKIVELGSGCGLVG 127

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255628649|gb|ACU14669.1| unknown [Glycine max]

 Score =  196 bits (499), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 100/120 (83%), Positives = 110/120 (91%), Gaps = 4/120 (3%)

Query: 18  MVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACG 77
           MVKLGSY G+VRL+ V G+   ESAAEETMLLWGIQQPTLSKPNAFV+Q+SL L +D+CG
Sbjct: 15  MVKLGSYGGEVRLM-VGGE---ESAAEETMLLWGIQQPTLSKPNAFVSQASLQLSLDSCG 70

Query: 78  HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           HSLSILQSPSSLGTPGVTG+VMWDSGVVLGKFLEHAV+SGML+L GKKI ELGSGCGLVG
Sbjct: 71  HSLSILQSPSSLGTPGVTGAVMWDSGVVLGKFLEHAVNSGMLVLQGKKIAELGSGCGLVG 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116486|ref|XP_002331909.1| predicted protein [Populus trichocarpa] gi|222874581|gb|EEF11712.1| predicted protein [Populus trichocarpa]

 Score =  196 bits (497), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 98/123 (79%), Positives = 107/123 (86%), Gaps = 4/123 (3%)

Query: 15  MMKMVKLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRID 74
           M + +KLGSY GKVR+L      + ESAA ETMLLWGIQQPT SKPN+FV+QSSL L +D
Sbjct: 1   MEEEIKLGSYGGKVRVL----RQDEESAAAETMLLWGIQQPTFSKPNSFVSQSSLQLNLD 56

Query: 75  ACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCG 134
           ACGH LSILQSPSSL TPGVTGSVMWDSGVVLGKFLEHAVDSG+LLLHGKK+VELGSGCG
Sbjct: 57  ACGHYLSILQSPSSLSTPGVTGSVMWDSGVVLGKFLEHAVDSGLLLLHGKKVVELGSGCG 116

Query: 135 LVG 137
           LVG
Sbjct: 117 LVG 119

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454571|ref|XP_002263420.1| PREDICTED: methyltransferase-like protein 21A [Vitis vinifera] gi|297737205|emb|CBI26406.3| unnamed protein product [Vitis vinifera]

 Score =  173 bits (439), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 89/118 (75%), Positives = 100/118 (84%), Gaps = 4/118 (3%)

Query: 20  KLGSYDGKVRLLIVSGDSESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHS 79
           K+G Y G V + +  G   SESAAEET++LW  QQPT S+ NAFV+QSSL+L +DACGHS
Sbjct: 9   KMGGYGGMVSV-VAEG---SESAAEETLMLWCTQQPTYSQHNAFVSQSSLSLHLDACGHS 64

Query: 80  LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           LSI QSPSSLG PGVTGSVMWDSGVVLGKFLEHAVDSG+LLL GKK+VELGSGCGLVG
Sbjct: 65  LSIFQSPSSLGKPGVTGSVMWDSGVVLGKFLEHAVDSGLLLLQGKKVVELGSGCGLVG 122

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557122|ref|XP_002519593.1| conserved hypothetical protein [Ricinus communis] gi|223541251|gb|EEF42804.1| conserved hypothetical protein [Ricinus communis]

 Score =  170 bits (430), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 81/91 (89%), Positives = 86/91 (94%)

Query: 47  MLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVL 106
           MLLWGIQQPTLS PN+FV+QSSL LRIDACGHSLSILQSPSSLG PGVTGSVMWDSGV+L
Sbjct: 1   MLLWGIQQPTLSAPNSFVSQSSLQLRIDACGHSLSILQSPSSLGKPGVTGSVMWDSGVIL 60

Query: 107 GKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           GKFLEHAVDS ML+L GKKIVELG+GCGLVG
Sbjct: 61  GKFLEHAVDSKMLILQGKKIVELGAGCGLVG 91

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297842081|ref|XP_002888922.1| hypothetical protein ARALYDRAFT_476461 [Arabidopsis lyrata subsp. lyrata] gi|297334763|gb|EFH65181.1| hypothetical protein ARALYDRAFT_476461 [Arabidopsis lyrata subsp. lyrata]

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 89/141 (63%), Positives = 104/141 (73%), Gaps = 10/141 (7%)

Query: 5   AEVETEEETEMMKMVKLGSYDGKVRLLIVSG--------DSESESAAEETMLLWGIQQPT 56
           AE   EE+  + ++ ++  Y G V  ++V G        +SES+ AA E M++W IQ PT
Sbjct: 15  AEKMDEEDETVEEIRQMSGYGGDV--IVVGGFPAAESESESESDLAAAEIMVIWAIQGPT 72

Query: 57  LSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS 116
              PNA VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVLGKFLEH+VDS
Sbjct: 73  SFAPNALVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFLEHSVDS 132

Query: 117 GMLLLHGKKIVELGSGCGLVG 137
            +L L GKKIVELGSGCGLVG
Sbjct: 133 KVLSLEGKKIVELGSGCGLVG 153

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55978781|gb|AAV68852.1| hypothetical protein AT1G73320 [Arabidopsis thaliana]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 92/157 (58%), Positives = 109/157 (69%), Gaps = 15/157 (9%)

Query: 3   TAAEVETE----EETEMMKMVKLGSYDGKVRLLIVSG--------DSESESAAEETMLLW 50
           +AA  E E    E+  + ++ ++  Y G V  ++V G        +SES+ AA E M++W
Sbjct: 16  SAARFEAEKMGKEDEAVEEIRRMSGYGGDV--IVVGGFPASESESESESDLAAAEIMVIW 73

Query: 51  GIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFL 110
            IQ PT   PN  VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVLGKFL
Sbjct: 74  AIQGPTSFAPNTLVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFL 133

Query: 111 EHAVDSGMLLLHGKKIVELGSGCGLVG-PFGCSSYPY 146
           EH+VDS +L L GKKIVELGSGCGLVG  FG    P+
Sbjct: 134 EHSVDSKVLSLEGKKIVELGSGCGLVGSTFGRQCCPH 170

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12324311|gb|AAG52120.1|AC010556_2 hypothetical protein; 516-1979 [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 89/147 (60%), Positives = 105/147 (71%), Gaps = 14/147 (9%)

Query: 3   TAAEVETE----EETEMMKMVKLGSYDGKVRLLIVSG--------DSESESAAEETMLLW 50
           +AA  E E    E+  + ++ ++  Y G V  ++V G        +SES+ AA E M++W
Sbjct: 11  SAARFEAEKMGKEDEAVEEIRRMSGYGGDV--IVVGGFPASESESESESDLAAAEIMVIW 68

Query: 51  GIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFL 110
            IQ PT   PN  VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVLGKFL
Sbjct: 69  AIQGPTSFAPNTLVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVLGKFL 128

Query: 111 EHAVDSGMLLLHGKKIVELGSGCGLVG 137
           EH+VDS +L L GKKIVELGSGCGLVG
Sbjct: 129 EHSVDSKVLSLEGKKIVELGSGCGLVG 155

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	150
TAIR|locus:2197234	316	AT1G73320 "AT1G73320" [Arabido	0.606	0.287	0.802	1.3e-34
ZFIN|ZDB-GENE-060825-19	223	mettl21d "methyltransferase li	0.3	0.201	0.448	1e-05
ZFIN|ZDB-GENE-050320-145	218	mettl21a "methyltransferase li	0.46	0.316	0.385	1.2e-05
UNIPROTKB|Q8WXB1	218	METTL21A "Protein-lysine methy	0.346	0.238	0.4	0.00013
UNIPROTKB|I3LNJ7	226	METTL21B "Uncharacterized prot	0.446	0.296	0.381	0.00014
UNIPROTKB|Q5RE14	236	METTL21A "Protein-lysine methy	0.346	0.220	0.4	0.00016
UNIPROTKB|A4FV42	218	METTL21A "Protein-lysine methy	0.346	0.238	0.416	0.00022
MGI|MGI:1914349	218	Mettl21a "methyltransferase li	0.346	0.238	0.416	0.00028
UNIPROTKB|Q96AZ1	226	METTL21B "Protein-lysine methy	0.36	0.238	0.412	0.00031
MGI|MGI:2684917	228	Mettl21d "methyltransferase li	0.313	0.206	0.46	0.00031

TAIR|locus:2197234 AT1G73320 "AT1G73320" [Arabidopsis thaliana (taxid:3702)]

 Score = 375 (137.1 bits), Expect = 1.3e-34, P = 1.3e-34
 Identities = 73/91 (80%), Positives = 78/91 (85%)

Query:    47 MLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVL 106
             M++W IQ PT   PN  VAQSSL LR+DACGHSLSILQSP SL TPGVTGSVMWDSGVVL
Sbjct:    70 MVIWAIQGPTSFAPNTLVAQSSLELRLDACGHSLSILQSPCSLNTPGVTGSVMWDSGVVL 129

Query:   107 GKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
             GKFLEH+VDS +L L GKKIVELGSGCGLVG
Sbjct:   130 GKFLEHSVDSKVLSLEGKKIVELGSGCGLVG 160

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

ZFIN|ZDB-GENE-060825-19 mettl21d "methyltransferase like 21D" [Danio rerio (taxid:7955)]

 Score = 106 (42.4 bits), Expect = 1.0e-05, P = 1.0e-05
 Identities = 22/49 (44%), Positives = 32/49 (65%)

Query:    93 GVTGSVMWDSGVVLGKFLEH----AVDSGMLLLHGKKIVELGSGCGLVG 137
             G  G V+WD+ +VL K+LE     ++ SG+ +   K I+ELG+G GLVG
Sbjct:    31 GDVGCVVWDAAIVLSKYLETEQFCSIGSGVSMWSSKNIIELGAGTGLVG 79

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

ZFIN|ZDB-GENE-050320-145 mettl21a "methyltransferase like 21A" [Danio rerio (taxid:7955)]

 Score = 105 (42.0 bits), Expect = 1.2e-05, P = 1.2e-05
 Identities = 32/83 (38%), Positives = 44/83 (53%)

Query:    55 PTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAV 114
             P LSK    + QSS    +    H + + Q    LG      +V+WD+ VVL  FLE   
Sbjct:    12 PALSK----LHQSSAEFTL--ANHRIRLSQDWKRLGV----AAVVWDAAVVLCMFLE--- 58

Query:   115 DSGMLLLHGKKIVELGSGCGLVG 137
               G + L GK+++ELG+G GLVG
Sbjct:    59 -MGKVDLKGKRVIELGAGTGLVG 80

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032259 "methylation" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|Q8WXB1 METTL21A "Protein-lysine methyltransferase METTL21A" [Homo sapiens (taxid:9606)]

 Score = 96 (38.9 bits), Expect = 0.00013, P = 0.00013
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query:    78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
             H++ I Q    LG      +V+WD+ +VL  +LE     G + L G+  VELG+G GLVG
Sbjct:    29 HTIQIRQDWRHLGV----AAVVWDAAIVLSTYLE----MGAVELRGRSAVELGAGTGLVG 80

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=IDA

GO:0006479 "protein methylation" evidence=IDA

GO:0018022 "peptidyl-lysine methylation" evidence=IDA

UNIPROTKB|I3LNJ7 METTL21B "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 96 (38.9 bits), Expect = 0.00014, P = 0.00014
 Identities = 29/76 (38%), Positives = 38/76 (50%)

Query:    63 FVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHA-VDSGMLLL 121
             F    S   R   CGH LSI ++  S    GV   V WD+ + L  + E   VD      
Sbjct:    23 FADSYSEKSRFCFCGHELSITENFGS--RLGVAARV-WDAALSLCNYFESQNVD-----F 74

Query:   122 HGKKIVELGSGCGLVG 137
              GKK++ELG+G G+VG
Sbjct:    75 RGKKVIELGAGTGIVG 90

GO:0005622 "intracellular" evidence=IEA

UNIPROTKB|Q5RE14 METTL21A "Protein-lysine methyltransferase METTL21A" [Pongo abelii (taxid:9601)]

 Score = 96 (38.9 bits), Expect = 0.00016, P = 0.00016
 Identities = 24/60 (40%), Positives = 34/60 (56%)

Query:    78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
             H++ I Q    LG      +V+WD+ +VL  +LE     G + L G+  VELG+G GLVG
Sbjct:    29 HTIQIRQDWRHLGV----AAVVWDAAIVLSTYLE----MGAVELRGRSAVELGAGTGLVG 80

GO:0006479 "protein methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

UNIPROTKB|A4FV42 METTL21A "Protein-lysine methyltransferase METTL21A" [Bos taurus (taxid:9913)]

 Score = 94 (38.1 bits), Expect = 0.00022, P = 0.00022
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query:    78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
             H++ I Q    LG      +V+WD+ VVL  +LE     G + L G   VELG+G GLVG
Sbjct:    29 HTIQIRQDWKQLGV----AAVVWDAAVVLATYLE----MGTVELRGCSAVELGAGTGLVG 80

GO:0018022 "peptidyl-lysine methylation" evidence=ISS

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISS

GO:0006479 "protein methylation" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

MGI|MGI:1914349 Mettl21a "methyltransferase like 21A" [Mus musculus (taxid:10090)]

 Score = 93 (37.8 bits), Expect = 0.00028, P = 0.00028
 Identities = 25/60 (41%), Positives = 33/60 (55%)

Query:    78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
             H++ I Q    LG      +V+WD+ VVL  +LE     G + L G   VELG+G GLVG
Sbjct:    29 HTIQIRQDWRQLGV----AAVVWDAAVVLSMYLE----MGAVELRGCSAVELGAGTGLVG 80

GO:0005575 "cellular_component" evidence=ND

GO:0006479 "protein methylation" evidence=ISO

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018022 "peptidyl-lysine methylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

UNIPROTKB|Q96AZ1 METTL21B "Protein-lysine methyltransferase METTL21B" [Homo sapiens (taxid:9606)]

 Score = 93 (37.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 26/63 (41%), Positives = 35/63 (55%)

Query:    76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHA-VDSGMLLLHGKKIVELGSGCG 134
             CGH L+I Q+  S    GV   V WD+ + L  + E   VD       GKK++ELG+G G
Sbjct:    36 CGHVLTITQNFGS--RLGVAARV-WDAALSLCNYFESQNVD-----FRGKKVIELGAGTG 87

Query:   135 LVG 137
             +VG
Sbjct:    88 IVG 90

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

MGI|MGI:2684917 Mettl21d "methyltransferase like 21D" [Mus musculus (taxid:10090)]

 Score = 93 (37.8 bits), Expect = 0.00031, P = 0.00031
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query:    90 GTPGVTGSVMWDSGVVLGKFLEHAVDSG--MLLLHGKKIVELGSGCGLVG 137
             G+ GV G V+WD+ +VL K+LE    SG     L  + ++ELGSG G VG
Sbjct:    34 GSGGV-GCVVWDAAIVLSKYLETPGFSGDGAHALSRRSVLELGSGTGAVG 82

GO:0005575 "cellular_component" evidence=ND

GO:0008168 "methyltransferase activity" evidence=IEA

GO:0016279 "protein-lysine N-methyltransferase activity" evidence=ISO

GO:0016740 "transferase activity" evidence=IEA

GO:0018023 "peptidyl-lysine trimethylation" evidence=ISO

GO:0032259 "methylation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_Genewise1_v1.C_1840077 hypothetical protein (260 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	150
pfam10294	170	pfam10294, Methyltransf_16, Putative methyltransfe	3e-10

>gnl|CDD|220679 pfam10294, Methyltransf_16, Putative methyltransferase

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 21/42 (50%), Positives = 27/42 (64%)

Query: 96  GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           G  +WD+ VVL K+LE  +  G   L G  ++ELGSG GLVG
Sbjct: 18  GGHVWDAAVVLSKYLEMKITPGGNNLSGLNVLELGSGTGLVG 59

Length = 170

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	150
PF10294	173	Methyltransf_16: Putative methyltransferase; Inter	99.49
COG3897	218	Predicted methyltransferase [General function pred	98.59
KOG2920	282	consensus Predicted methyltransferase [General fun	98.54
KOG2793	248	consensus Putative N2,N2-dimethylguanosine tRNA me	98.07
COG2263	198	Predicted RNA methylase [Translation, ribosomal st	97.96
PF06325	295	PrmA: Ribosomal protein L11 methyltransferase (Prm	97.83
PF05175	170	MTS: Methyltransferase small domain; InterPro: IPR	97.67
COG2264	300	PrmA Ribosomal protein L11 methylase [Translation,	97.58
KOG1499	346	consensus Protein arginine N-methyltransferase PRM	97.29
COG4123	248	Predicted O-methyltransferase [General function pr	97.26
KOG3201	201	consensus Uncharacterized conserved protein [Funct	97.25
TIGR00406	288	prmA ribosomal protein L11 methyltransferase. Ribo	96.93
TIGR00478	228	tly hemolysin TlyA family protein. Hemolysins are	96.67
KOG2497	262	consensus Predicted methyltransferase [General fun	96.65
TIGR00138	181	gidB 16S rRNA methyltransferase GidB. GidB (glucos	96.57
PRK00517	250	prmA ribosomal protein L11 methyltransferase; Revi	96.55
PRK15001	378	SAM-dependent 23S ribosomal RNA mG1835 methyltrans	96.4
TIGR00452	314	methyltransferase, putative. Known examples to dat	96.39
COG2813	300	RsmC 16S RNA G1207 methylase RsmC [Translation, ri	96.36
PRK00107	187	gidB 16S rRNA methyltransferase GidB; Reviewed	96.26
PRK15068	322	tRNA mo(5)U34 methyltransferase; Provisional	96.26
PRK14967	223	putative methyltransferase; Provisional	96.14
PRK08287	187	cobalt-precorrin-6Y C(15)-methyltransferase; Valid	95.96
KOG3420	185	consensus Predicted RNA methylase [Translation, ri	95.88
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	95.76
PRK14968	188	putative methyltransferase; Provisional	95.72
PF13489	161	Methyltransf_23: Methyltransferase domain; PDB: 3J	95.68
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	95.64
PRK00274	272	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.63
PRK01683	258	trans-aconitate 2-methyltransferase; Provisional	95.56
COG2227	243	UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-	95.54
PRK00312	212	pcm protein-L-isoaspartate O-methyltransferase; Re	95.45
KOG1270	282	consensus Methyltransferases [Coenzyme transport a	95.42
PRK11207	197	tellurite resistance protein TehB; Provisional	95.41
PLN02396	322	hexaprenyldihydroxybenzoate methyltransferase	95.41
TIGR00095	189	RNA methyltransferase, RsmD family. This model rep	95.4
KOG1500	517	consensus Protein arginine N-methyltransferase CAR	95.36
TIGR00477	195	tehB tellurite resistance protein TehB. Part of a	95.26
PRK14896	258	ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1	95.03
TIGR02143	353	trmA_only tRNA (uracil-5-)-methyltransferase. This	95.02
PRK04266	226	fibrillarin; Provisional	95.02
PRK12335	287	tellurite resistance protein TehB; Provisional	94.98
PRK07402	196	precorrin-6B methylase; Provisional	94.98
TIGR02072	240	BioC biotin biosynthesis protein BioC. This enzyme	94.97
TIGR01983	224	UbiG ubiquinone biosynthesis O-methyltransferase.	94.9
PRK07580	230	Mg-protoporphyrin IX methyl transferase; Validated	94.74
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	94.65
PF02527	184	GidB: rRNA small subunit methyltransferase G; Inte	94.64
PRK00121	202	trmB tRNA (guanine-N(7)-)-methyltransferase; Revie	94.64
TIGR00755	253	ksgA dimethyladenosine transferase. Alternate name	94.63
TIGR02021	219	BchM-ChlM magnesium protoporphyrin O-methyltransfe	94.62
PRK10909	199	rsmD 16S rRNA m(2)G966-methyltransferase; Provisio	94.62
PRK14103	255	trans-aconitate 2-methyltransferase; Provisional	94.59
PRK11036	255	putative S-adenosyl-L-methionine-dependent methylt	94.52
COG0357	215	GidB Predicted S-adenosylmethionine-dependent meth	94.48
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	94.47
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	94.44
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	94.42
TIGR03587	204	Pse_Me-ase pseudaminic acid biosynthesis-associate	94.38
TIGR00438	188	rrmJ cell division protein FtsJ.	94.35
COG4976	287	Predicted methyltransferase (contains TPR repeat)	94.31
TIGR03534	251	RF_mod_PrmC protein-(glutamine-N5) methyltransfera	94.27
PRK10258	251	biotin biosynthesis protein BioC; Provisional	94.2
PRK09489	342	rsmC 16S ribosomal RNA m2G1207 methyltransferase;	94.17
PLN02585	315	magnesium protoporphyrin IX methyltransferase	94.17
PRK05134	233	bifunctional 3-demethylubiquinone-9 3-methyltransf	94.15
PRK03522	315	rumB 23S rRNA methyluridine methyltransferase; Rev	93.91
TIGR02752	231	MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me	93.75
COG2890	280	HemK Methylase of polypeptide chain release factor	93.73
PF08003	315	Methyltransf_9: Protein of unknown function (DUF16	93.66
PRK13168	443	rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe	93.64
PF02353	273	CMAS: Mycolic acid cyclopropane synthetase; InterP	93.53
COG2230	283	Cfa Cyclopropane fatty acid synthase and related m	93.52
PLN02672	1082	methionine S-methyltransferase	93.5
PRK09328	275	N5-glutamine S-adenosyl-L-methionine-dependent met	93.27
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	93.23
PRK06202	232	hypothetical protein; Provisional	93.2
PRK05031	362	tRNA (uracil-5-)-methyltransferase; Validated	93.07
PRK15451	247	tRNA cmo(5)U34 methyltransferase; Provisional	93.05
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	93.04
PLN02781	234	Probable caffeoyl-CoA O-methyltransferase	92.91
TIGR03533	284	L3_gln_methyl protein-(glutamine-N5) methyltransfe	92.91
TIGR02085	374	meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer	92.87
TIGR00740	239	methyltransferase, putative. A simple BLAST search	92.77
PRK00216	239	ubiE ubiquinone/menaquinone biosynthesis methyltra	92.76
TIGR03704	251	PrmC_rel_meth putative protein-(glutamine-N5) meth	92.73
TIGR03840	213	TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d	92.67
PTZ00338	294	dimethyladenosine transferase-like protein; Provis	92.6
PRK05785	226	hypothetical protein; Provisional	92.52
PRK13255	218	thiopurine S-methyltransferase; Reviewed	92.51
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	92.43
PF03848	192	TehB: Tellurite resistance protein TehB; InterPro:	92.35
PLN02244	340	tocopherol O-methyltransferase	92.3
PF01135	209	PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl	92.24
PLN02336	475	phosphoethanolamine N-methyltransferase	92.12
PRK11783	702	rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi	92.02
TIGR00536	284	hemK_fam HemK family putative methylases. The gene	91.99
PRK11705	383	cyclopropane fatty acyl phospholipid synthase; Pro	91.82
PLN02233	261	ubiquinone biosynthesis methyltransferase	91.68
PF01596	205	Methyltransf_3: O-methyltransferase; InterPro: IPR	91.63
PF05185	448	PRMT5: PRMT5 arginine-N-methyltransferase; InterPr	91.48
PRK15128	396	23S rRNA m(5)C1962 methyltransferase; Provisional	91.44
PHA03412	241	putative methyltransferase; Provisional	91.42
PRK14966	423	unknown domain/N5-glutamine S-adenosyl-L-methionin	91.37
TIGR01934	223	MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis	91.34
PHA03411	279	putative methyltransferase; Provisional	91.31
PTZ00098	263	phosphoethanolamine N-methyltransferase; Provision	90.98
TIGR00479	431	rumA 23S rRNA (uracil-5-)-methyltransferase RumA.	90.87
COG2242	187	CobL Precorrin-6B methylase 2 [Coenzyme metabolism	90.82
PRK11088	272	rrmA 23S rRNA methyltransferase A; Provisional	90.81
TIGR03438	301	probable methyltransferase. This model represents	90.75
PRK01544	506	bifunctional N5-glutamine S-adenosyl-L-methionine-	90.63
PRK11805	307	N5-glutamine S-adenosyl-L-methionine-dependent met	90.62
TIGR02716	306	C20_methyl_CrtF C-20 methyltransferase BchU. Membe	90.54
COG3963	194	Phospholipid N-methyltransferase [Lipid metabolism	90.45
PF01209	233	Ubie_methyltran: ubiE/COQ5 methyltransferase famil	90.35
TIGR01177	329	conserved hypothetical protein TIGR01177. This fam	90.05
PLN02490	340	MPBQ/MSBQ methyltransferase	89.73
PLN02476	278	O-methyltransferase	89.47
PLN02336	475	phosphoethanolamine N-methyltransferase	89.38
PF13679	141	Methyltransf_32: Methyltransferase domain	89.27
PRK14121	390	tRNA (guanine-N(7)-)-methyltransferase; Provisiona	89.26
PRK10901	427	16S rRNA methyltransferase B; Provisional	88.81
PRK04457	262	spermidine synthase; Provisional	88.45
COG4076	252	Predicted RNA methylase [General function predicti	88.06
PRK06922	677	hypothetical protein; Provisional	88.06
COG2226	238	UbiE Methylase involved in ubiquinone/menaquinone	87.84
PRK11727	321	23S rRNA mA1618 methyltransferase; Provisional	87.33
KOG3191	209	consensus Predicted N6-DNA-methyltransferase [Tran	86.65
PTZ00146	293	fibrillarin; Provisional	86.19
PRK14904	445	16S rRNA methyltransferase B; Provisional	86.06
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	84.89
TIGR00563	426	rsmB ribosomal RNA small subunit methyltransferase	84.26
PF05958	352	tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas	83.91
PHA01634	156	hypothetical protein	83.82
PF05219	265	DREV: DREV methyltransferase; InterPro: IPR007884	83.2
PF00398	262	RrnaAD: Ribosomal RNA adenine dimethylase; InterPr	83.08
KOG2904	328	consensus Predicted methyltransferase [General fun	83.03
PRK14902	444	16S rRNA methyltransferase B; Provisional	82.37
PLN02589	247	caffeoyl-CoA O-methyltransferase	81.16
PF09243	274	Rsm22: Mitochondrial small ribosomal subunit Rsm22	80.9
KOG1541	270	consensus Predicted protein carboxyl methylase [Ge	80.8
TIGR00446	264	nop2p NOL1/NOP2/sun family putative RNA methylase.	80.03

>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases

Probab=99.49  E-value=2.1e-14  Score=111.61  Aligned_cols=62  Identities=31%  Similarity=0.530  Sum_probs=34.4

Q ss_pred             CceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhc--CccccCCCeEEEeCCCCChhHHHHhhc
Q 031904           77 GHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDS--GMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus        77 g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~--~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      +.+|.|+|+..     ..||.++|+++++|++||.+....  .+..+++++|||||||||++||++|++
T Consensus         3 ~~~l~i~e~~~-----~~~G~~vW~aa~~La~~l~~~~~~~~~~~~~~~~~VLELGaG~Gl~gi~~a~~   66 (173)
T PF10294_consen    3 NKTLQIEEDWG-----DGTGGKVWPAALVLARYLLSHSESEFNPELFRGKRVLELGAGTGLPGIAAAKL   66 (173)
T ss_dssp             -------------------------HHHHHHHHHHH-------GGGTTTSEEEETT-TTSHHHHHHHHT
T ss_pred             ccccccccccc-----cCCcEEEechHHHHHHHHHHhcccccchhhcCCceEEEECCccchhHHHHHhc
Confidence            45678888753     458999999999999999985311  256789999999999999999999999

They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.

>COG3897 Predicted methyltransferase [General function prediction only]

Probab=98.59  E-value=2.3e-08  Score=80.80  Aligned_cols=52  Identities=23%  Similarity=0.460  Sum_probs=47.4

Q ss_pred             CccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904           93 GVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus        93 g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ...++..|.+.+.||+|+..+    |..++||+|||+|+|.||++|++++.|..++
T Consensus        54 Ppfwa~~WagG~~lAR~i~~~----PetVrgkrVLd~gagsgLvaIAaa~aGA~~v  105 (218)
T COG3897          54 PPFWAFAWAGGQVLARYIDDH----PETVRGKRVLDLGAGSGLVAIAAARAGAAEV  105 (218)
T ss_pred             chHHHHHHhhhHHHHHHHhcC----ccccccceeeecccccChHHHHHHHhhhHHH
Confidence            447899999999999999984    7899999999999999999999999998754

>KOG2920 consensus Predicted methyltransferase [General function prediction only]

Probab=98.54  E-value=7.1e-08  Score=81.22  Aligned_cols=50  Identities=28%  Similarity=0.569  Sum_probs=44.3

Q ss_pred             cceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        95 tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .|+++|.+|..|..++.... .....++||+|||||||+||+||.+..-+.
T Consensus        90 Gg~k~wecS~dl~~~l~~e~-~~~~~~~~k~vLELgCg~~Lp~i~~~~~~~  139 (282)
T KOG2920|consen   90 GGLKLWECSVDLLPYLKEEI-GAQMSFSGKRVLELGCGAALPGIFAFVKGA  139 (282)
T ss_pred             cceEEeecHHHHHHHHHHHh-hhheEecCceeEecCCcccccchhhhhhcc
Confidence            48999999999999999764 346789999999999999999999998774

>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]

Probab=98.07  E-value=6.1e-06  Score=68.52  Aligned_cols=54  Identities=22%  Similarity=0.298  Sum_probs=40.6

Q ss_pred             CccceeeechHHHHHHHHhhhhhcCc-----cccC--CCeEEEeCCCCChhHHHHhhcCCc
Q 031904           93 GVTGSVMWDSGVVLGKFLEHAVDSGM-----LLLH--GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        93 g~tG~~vW~asi~La~~L~~~~~~~~-----~~~~--gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ....+++|+++-.++.++.....+.+     ..++  .++|||||+|||++||++|.+...
T Consensus        50 ~~~~~~~w~~~~~la~~~~~~~~~~~~~~~~~g~~~~~~~vlELGsGtglvG~~aa~~~~~  110 (248)
T KOG2793|consen   50 QGISAYLWSCATTLAQPLWERRRDSELTATLIGFKTKYINVLELGSGTGLVGILAALLLGA  110 (248)
T ss_pred             cceeeEEeehhhccchhhhhhhcCchhhhccccccccceeEEEecCCccHHHHHHHHHhcc
Confidence            33678999999999999887643211     1122  457999999999999999995543

>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=97.96  E-value=3.4e-06  Score=67.83  Aligned_cols=30  Identities=27%  Similarity=0.348  Sum_probs=27.9

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ..+.|++|++||||||++||.++.+|++++
T Consensus        42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V   71 (198)
T COG2263          42 GDLEGKTVLDLGAGTGILAIGAALLGASRV   71 (198)
T ss_pred             CCcCCCEEEEcCCCcCHHHHHHHhcCCcEE
Confidence            578999999999999999999999999865

>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences

Probab=97.83  E-value=3.8e-05  Score=65.11  Aligned_cols=59  Identities=17%  Similarity=0.293  Sum_probs=41.8

Q ss_pred             ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904           78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus        78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..+.|.-+|..  .   +|.=.-+.+..-.++|.+      ...+|++||++|||+|+++|+|+++|++.
T Consensus       128 ~~~~I~idPg~--A---FGTG~H~TT~lcl~~l~~------~~~~g~~vLDvG~GSGILaiaA~klGA~~  186 (295)
T PF06325_consen  128 DEIVIEIDPGM--A---FGTGHHPTTRLCLELLEK------YVKPGKRVLDVGCGSGILAIAAAKLGAKK  186 (295)
T ss_dssp             TSEEEEESTTS--S---S-SSHCHHHHHHHHHHHH------HSSTTSEEEEES-TTSHHHHHHHHTTBSE
T ss_pred             CcEEEEECCCC--c---ccCCCCHHHHHHHHHHHH------hccCCCEEEEeCCcHHHHHHHHHHcCCCe
Confidence            45566666542  2   233334567777778876      36788999999999999999999999874

Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....

>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases

Probab=97.67  E-value=0.00014  Score=55.99  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=38.3

Q ss_pred             EEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           80 LSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        80 l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++++.+...+...     +=.++.+|++++...        .+++|||||||+|++|+.+++.++.
T Consensus         2 ~~~~~~~gvFs~~~-----~d~~t~lL~~~l~~~--------~~~~vLDlG~G~G~i~~~la~~~~~   55 (170)
T PF05175_consen    2 LEFITHPGVFSPPR-----LDAGTRLLLDNLPKH--------KGGRVLDLGCGSGVISLALAKRGPD   55 (170)
T ss_dssp             EEEEEETTSTTTTS-----HHHHHHHHHHHHHHH--------TTCEEEEETSTTSHHHHHHHHTSTC
T ss_pred             EEEEECCCeeCCCC-----CCHHHHHHHHHHhhc--------cCCeEEEecCChHHHHHHHHHhCCC
Confidence            56677654322111     112566777777762        6789999999999999999998876

; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....

>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]

Probab=97.58  E-value=0.00014  Score=61.99  Aligned_cols=59  Identities=25%  Similarity=0.387  Sum_probs=42.2

Q ss_pred             ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904           78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus        78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..+.|+-+|..  .-| ||.  -+.+..-.+||.+      ...+|++||++|||+|+++|+++++|+..
T Consensus       129 ~~~~i~lDPGl--AFG-TG~--HpTT~lcL~~Le~------~~~~g~~vlDvGcGSGILaIAa~kLGA~~  187 (300)
T COG2264         129 DELNIELDPGL--AFG-TGT--HPTTSLCLEALEK------LLKKGKTVLDVGCGSGILAIAAAKLGAKK  187 (300)
T ss_pred             CceEEEEcccc--ccC-CCC--ChhHHHHHHHHHH------hhcCCCEEEEecCChhHHHHHHHHcCCce
Confidence            46777777763  122 232  2445555566765      34599999999999999999999999873

>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]

Probab=97.29  E-value=0.00016  Score=62.63  Aligned_cols=31  Identities=19%  Similarity=0.484  Sum_probs=28.2

Q ss_pred             CccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          117 GMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       117 ~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      +..+|++|.||+.|||||++++.+|+.|+++
T Consensus        55 n~~lf~dK~VlDVGcGtGILS~F~akAGA~~   85 (346)
T KOG1499|consen   55 NKHLFKDKTVLDVGCGTGILSMFAAKAGARK   85 (346)
T ss_pred             chhhcCCCEEEEcCCCccHHHHHHHHhCcce
Confidence            3568999999999999999999999999774

>COG4123 Predicted O-methyltransferase [General function prediction only]

Probab=97.26  E-value=0.00045  Score=57.48  Aligned_cols=54  Identities=19%  Similarity=0.244  Sum_probs=40.3

Q ss_pred             cCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           76 CGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        76 ~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++.+.|.|.+..        +..=--+++|+.|...        ...++|||||||+|++||++|.-.+
T Consensus        14 ~~~~~~I~q~~~~--------~~~~~DaiLL~~~~~~--------~~~~~IlDlGaG~G~l~L~la~r~~   67 (248)
T COG4123          14 TFKQFFIIQDRCG--------FRYGTDAILLAAFAPV--------PKKGRILDLGAGNGALGLLLAQRTE   67 (248)
T ss_pred             cccceEEEeCCCc--------cccccHHHHHHhhccc--------ccCCeEEEecCCcCHHHHHHhccCC
Confidence            3567889998753        3322367888888654        2288999999999999999998643

>KOG3201 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.25  E-value=6.3e-05  Score=59.79  Aligned_cols=48  Identities=31%  Similarity=0.516  Sum_probs=41.3

Q ss_pred             cce-eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCC-ChhHHHHhhcCCc
Q 031904           95 TGS-VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGC-GLVGPFGCSSYPY  146 (150)
Q Consensus        95 tG~-~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGt-GL~Gi~aa~l~~~  146 (150)
                      ||. .+||+.-.|+.++.+.    +..++|++|||||.|- ||.||..|...|.
T Consensus         5 tgnvciwpseeala~~~l~~----~n~~rg~~ilelgggft~laglmia~~a~~   54 (201)
T KOG3201|consen    5 TGNVCIWPSEEALAWTILRD----PNKIRGRRILELGGGFTGLAGLMIACKAPD   54 (201)
T ss_pred             CCcEEecccHHHHHHHHHhc----hhHHhHHHHHHhcCchhhhhhhheeeecCC
Confidence            454 7899999999999985    6789999999999996 9999998876653

>TIGR00406 prmA ribosomal protein L11 methyltransferase

Probab=96.93  E-value=0.0024  Score=53.23  Aligned_cols=45  Identities=20%  Similarity=0.308  Sum_probs=32.8

Q ss_pred             ceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           96 GSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        96 G~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      |.-..+.+....++|.+      ...++++|||+|||+|+.++.++++++.
T Consensus       139 gtG~h~tt~l~l~~l~~------~~~~g~~VLDvGcGsG~lai~aa~~g~~  183 (288)
T TIGR00406       139 GTGTHPTTSLCLEWLED------LDLKDKNVIDVGCGSGILSIAALKLGAA  183 (288)
T ss_pred             cCCCCHHHHHHHHHHHh------hcCCCCEEEEeCCChhHHHHHHHHcCCC
Confidence            33344555555566655      2356899999999999999999988764

Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.

>TIGR00478 tly hemolysin TlyA family protein

Probab=96.67  E-value=0.0028  Score=51.86  Aligned_cols=45  Identities=18%  Similarity=0.156  Sum_probs=37.9

Q ss_pred             eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        98 ~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.++.-|...+...    ...+++++|||+|||||.....++..|+.
T Consensus        55 ~vsr~~~kL~~~l~~~----~~~~~~~~vlDiG~gtG~~t~~l~~~ga~   99 (228)
T TIGR00478        55 FVSRGGEKLKEALEEF----NIDVKNKIVLDVGSSTGGFTDCALQKGAK   99 (228)
T ss_pred             hhhhhHHHHHHHHHhc----CCCCCCCEEEEcccCCCHHHHHHHHcCCC
Confidence            5578888888888874    45689999999999999999999998654

Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).

>KOG2497 consensus Predicted methyltransferase [General function prediction only]

Probab=96.65  E-value=0.00035  Score=58.48  Aligned_cols=63  Identities=25%  Similarity=0.173  Sum_probs=51.7

Q ss_pred             ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904           78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus        78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ....|.|..+.....+.||..+|.+++.|..+|.++    +....+++|.|||||+++..++++++.
T Consensus        50 ~~~v~~~~~~~~~~~~~tg~~~w~~al~L~~~l~~~----~d~~~~~~v~~l~~gi~~~~~~~a~~~  112 (262)
T KOG2497|consen   50 GTKVILQSHSLRFLLARTGLSVWESALSLEADLRDK----PDLSSELTVEELGCDIALKHVLAARVP  112 (262)
T ss_pred             cCeeeecchHHHHHHHHhccccchHHHHHHHHHhhC----cccccccchHhhccCHHHHHHHHHhcc
Confidence            456677777644456779999999999999999985    556889999999999999987777654

>TIGR00138 gidB 16S rRNA methyltransferase GidB

Probab=96.57  E-value=0.0028  Score=49.58  Aligned_cols=26  Identities=38%  Similarity=0.648  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++++|||+|||+|..++.++...+.
T Consensus        41 ~~~~~vLDiGcGtG~~s~~la~~~~~   66 (181)
T TIGR00138        41 LDGKKVIDIGSGAGFPGIPLAIARPE   66 (181)
T ss_pred             cCCCeEEEecCCCCccHHHHHHHCCC
Confidence            45899999999999999999877654

GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.

>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed

Probab=96.55  E-value=0.0029  Score=51.55  Aligned_cols=58  Identities=19%  Similarity=0.287  Sum_probs=40.3

Q ss_pred             ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+.|..++..  .   .|.-..+.+..+.++|...      ..++++|||+|||+|+.++.+++.++.
T Consensus        86 ~~~~i~i~p~~--a---fgtg~h~tt~~~l~~l~~~------~~~~~~VLDiGcGsG~l~i~~~~~g~~  143 (250)
T PRK00517         86 DEINIELDPGM--A---FGTGTHPTTRLCLEALEKL------VLPGKTVLDVGCGSGILAIAAAKLGAK  143 (250)
T ss_pred             CeEEEEECCCC--c---cCCCCCHHHHHHHHHHHhh------cCCCCEEEEeCCcHHHHHHHHHHcCCC
Confidence            34556666542  1   2333366677777777652      357899999999999999999988765

>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional

Probab=96.40  E-value=0.011  Score=51.76  Aligned_cols=64  Identities=19%  Similarity=0.257  Sum_probs=39.1

Q ss_pred             eEEEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           70 NLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        70 ~l~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++.+.+..++|.-.+.-.+..+.     =..+    ++|.+..   +. ..+.+|||||||+|++|+.++...|.
T Consensus       189 ~~~~~~~~~~~~~~~~~gVFs~~~L-----D~Gt----rllL~~l---p~-~~~~~VLDLGCGtGvi~i~la~~~P~  252 (378)
T PRK15001        189 TVSWKLEGTDWTIHNHANVFSRTGL-----DIGA----RFFMQHL---PE-NLEGEIVDLGCGNGVIGLTLLDKNPQ  252 (378)
T ss_pred             eeEEEEcCceEEEEecCCccCCCCc-----ChHH----HHHHHhC---Cc-ccCCeEEEEeccccHHHHHHHHhCCC
Confidence            3456677788888877653221111     0122    2333321   11 12359999999999999999988764

>TIGR00452 methyltransferase, putative

Probab=96.39  E-value=0.0047  Score=52.74  Aligned_cols=43  Identities=23%  Similarity=0.356  Sum_probs=32.1

Q ss_pred             eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -|.+.+....++.+     -..++|++|||+|||+|...+.++..++.
T Consensus       103 e~~s~~~~~~~l~~-----l~~~~g~~VLDvGCG~G~~~~~~~~~g~~  145 (314)
T TIGR00452       103 EWRSDIKWDRVLPH-----LSPLKGRTILDVGCGSGYHMWRMLGHGAK  145 (314)
T ss_pred             HHHHHHHHHHHHHh-----cCCCCCCEEEEeccCCcHHHHHHHHcCCC
Confidence            46666665555554     23578999999999999998888877764

Known examples to date are restricted to the proteobacteria.

>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]

Probab=96.36  E-value=0.0037  Score=53.37  Aligned_cols=56  Identities=27%  Similarity=0.449  Sum_probs=36.2

Q ss_pred             CceEEEEecCCCCCC-CCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           77 GHSLSILQSPSSLGT-PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        77 g~~l~I~Q~~ss~~~-~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +..++++-.+.-.+. .=+.|          ++.|.++.   +....+ +||+||||.|++|+.+++..|.
T Consensus       126 ~~~~~~~t~pGVFS~~~lD~G----------S~lLl~~l---~~~~~~-~vlDlGCG~Gvlg~~la~~~p~  182 (300)
T COG2813         126 GHELTFKTLPGVFSRDKLDKG----------SRLLLETL---PPDLGG-KVLDLGCGYGVLGLVLAKKSPQ  182 (300)
T ss_pred             cCceEEEeCCCCCcCCCcChH----------HHHHHHhC---CccCCC-cEEEeCCCccHHHHHHHHhCCC
Confidence            677788777652211 11122          23455532   233444 9999999999999999999873

>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed

Probab=96.26  E-value=0.0056  Score=48.40  Aligned_cols=24  Identities=29%  Similarity=0.592  Sum_probs=20.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|..++.++...+
T Consensus        45 ~g~~VLDiGcGtG~~al~la~~~~   68 (187)
T PRK00107         45 GGERVLDVGSGAGFPGIPLAIARP   68 (187)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHHCC
Confidence            389999999999999999887544

>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional

Probab=96.26  E-value=0.0068  Score=51.57  Aligned_cols=44  Identities=20%  Similarity=0.293  Sum_probs=31.2

Q ss_pred             eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        98 ~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .-|++-+.....+..     -..++|++|||+|||+|...+.++..++.
T Consensus       103 ~ew~s~~k~~~l~~~-----l~~l~g~~VLDIGCG~G~~~~~la~~g~~  146 (322)
T PRK15068        103 TEWRSDWKWDRVLPH-----LSPLKGRTVLDVGCGNGYHMWRMLGAGAK  146 (322)
T ss_pred             ceehHHhHHHHHHHh-----hCCCCCCEEEEeccCCcHHHHHHHHcCCC
Confidence            456665543333322     12468999999999999999988888765

>PRK14967 putative methyltransferase; Provisional

Probab=96.14  E-value=0.0074  Score=48.10  Aligned_cols=38  Identities=18%  Similarity=0.283  Sum_probs=29.0

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +..|++++...     ...++.+|||+|||+|..++.++..+.
T Consensus        22 s~~l~~~l~~~-----~~~~~~~vLDlGcG~G~~~~~la~~~~   59 (223)
T PRK14967         22 TQLLADALAAE-----GLGPGRRVLDLCTGSGALAVAAAAAGA   59 (223)
T ss_pred             HHHHHHHHHhc-----ccCCCCeEEEecCCHHHHHHHHHHcCC
Confidence            45677777652     234578999999999999999988754

>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated

Probab=95.96  E-value=0.007  Score=46.74  Aligned_cols=25  Identities=24%  Similarity=0.545  Sum_probs=22.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.+|||+|||+|..++.+++..+
T Consensus        30 ~~~~~vLDiG~G~G~~~~~la~~~~   54 (187)
T PRK08287         30 HRAKHLIDVGAGTGSVSIEAALQFP   54 (187)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHCC
Confidence            3678999999999999999988765

>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]

Probab=95.88  E-value=0.0057  Score=48.10  Aligned_cols=28  Identities=29%  Similarity=0.421  Sum_probs=24.5

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+.||++++||||||.+++.++..++.
T Consensus        45 gdiEgkkl~DLgcgcGmLs~a~sm~~~e   72 (185)
T KOG3420|consen   45 GDIEGKKLKDLGCGCGMLSIAFSMPKNE   72 (185)
T ss_pred             ccccCcchhhhcCchhhhHHHhhcCCCc
Confidence            4699999999999999999888777664

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=95.76  E-value=0.017  Score=45.72  Aligned_cols=27  Identities=26%  Similarity=0.388  Sum_probs=22.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++.+|||+|||+|..++.++...+.
T Consensus        75 ~~~~~~VLDiG~GsG~~a~~la~~~~~  101 (215)
T TIGR00080        75 LKPGMKVLEIGTGSGYQAAVLAEIVGR  101 (215)
T ss_pred             CCCcCEEEEECCCccHHHHHHHHHhCC
Confidence            346789999999999999999887654

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>PRK14968 putative methyltransferase; Provisional

Probab=95.72  E-value=0.015  Score=43.98  Aligned_cols=38  Identities=18%  Similarity=0.382  Sum_probs=28.2

Q ss_pred             echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      |+-+.+|.+++..        .++++|||+|||+|..++.++..+.
T Consensus         9 ~~~~~~l~~~~~~--------~~~~~vLd~G~G~G~~~~~l~~~~~   46 (188)
T PRK14968          9 AEDSFLLAENAVD--------KKGDRVLEVGTGSGIVAIVAAKNGK   46 (188)
T ss_pred             chhHHHHHHhhhc--------cCCCEEEEEccccCHHHHHHHhhcc
Confidence            4555566665542        4678999999999999998887643

>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C

Probab=95.68  E-value=0.02  Score=41.75  Aligned_cols=27  Identities=22%  Similarity=0.236  Sum_probs=22.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++++|||+|||+|.....++..+..
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~   46 (161)
T PF13489_consen   20 LKPGKRVLDIGCGTGSFLRALAKRGFE   46 (161)
T ss_dssp             TTTTSEEEEESSTTSHHHHHHHHTTSE
T ss_pred             cCCCCEEEEEcCCCCHHHHHHHHhCCE
Confidence            567889999999999988888776653

...

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=95.64  E-value=0.028  Score=39.35  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||||||+|...+.++...+
T Consensus        18 ~~~~~vldlG~G~G~~~~~l~~~~~   42 (124)
T TIGR02469        18 RPGDVLWDIGAGSGSITIEAARLVP   42 (124)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            3578999999999999998887654

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed

Probab=95.63  E-value=0.016  Score=47.88  Aligned_cols=27  Identities=19%  Similarity=0.230  Sum_probs=22.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .++.+|||+|||+|..+..++..++..
T Consensus        41 ~~~~~VLEiG~G~G~lt~~L~~~~~~v   67 (272)
T PRK00274         41 QPGDNVLEIGPGLGALTEPLLERAAKV   67 (272)
T ss_pred             CCcCeEEEeCCCccHHHHHHHHhCCcE
Confidence            467899999999999999998876643

>PRK01683 trans-aconitate 2-methyltransferase; Provisional

Probab=95.56  E-value=0.024  Score=45.62  Aligned_cols=25  Identities=24%  Similarity=0.416  Sum_probs=20.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|...+.++...+
T Consensus        30 ~~~~~vLDiGcG~G~~~~~la~~~~   54 (258)
T PRK01683         30 ENPRYVVDLGCGPGNSTELLVERWP   54 (258)
T ss_pred             cCCCEEEEEcccCCHHHHHHHHHCC
Confidence            3578999999999999988876543

>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]

Probab=95.54  E-value=0.01  Score=49.34  Aligned_cols=30  Identities=17%  Similarity=0.208  Sum_probs=26.8

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      .+.|++||+.|||-|+++.-+|++|..+.+
T Consensus        57 ~l~g~~vLDvGCGgG~Lse~mAr~Ga~Vtg   86 (243)
T COG2227          57 DLPGLRVLDVGCGGGILSEPLARLGASVTG   86 (243)
T ss_pred             CCCCCeEEEecCCccHhhHHHHHCCCeeEE
Confidence            489999999999999999999999976643

>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed

Probab=95.45  E-value=0.023  Score=44.69  Aligned_cols=40  Identities=18%  Similarity=0.257  Sum_probs=27.6

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++..+..++...    ...-++.+|||+|||+|..+..++.+..
T Consensus        62 ~~p~~~~~l~~~----l~~~~~~~VLeiG~GsG~~t~~la~~~~  101 (212)
T PRK00312         62 SQPYMVARMTEL----LELKPGDRVLEIGTGSGYQAAVLAHLVR  101 (212)
T ss_pred             CcHHHHHHHHHh----cCCCCCCEEEEECCCccHHHHHHHHHhC
Confidence            444555555542    1234678999999999999888877654

>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]

Probab=95.42  E-value=0.0091  Score=50.46  Aligned_cols=29  Identities=28%  Similarity=0.260  Sum_probs=25.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      .+-|++|||.|||+||++.=+|++|..+-
T Consensus        87 ~~~g~~ilDvGCGgGLLSepLArlga~V~  115 (282)
T KOG1270|consen   87 PLLGMKILDVGCGGGLLSEPLARLGAQVT  115 (282)
T ss_pred             ccCCceEEEeccCccccchhhHhhCCeeE
Confidence            35578999999999999999999997653

>PRK11207 tellurite resistance protein TehB; Provisional

Probab=95.41  E-value=0.014  Score=45.91  Aligned_cols=26  Identities=19%  Similarity=0.197  Sum_probs=22.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++++|||+|||+|..++.+|..+..
T Consensus        29 ~~~~~vLDiGcG~G~~a~~La~~g~~   54 (197)
T PRK11207         29 VKPGKTLDLGCGNGRNSLYLAANGFD   54 (197)
T ss_pred             CCCCcEEEECCCCCHHHHHHHHCCCE
Confidence            46789999999999999999886644

>PLN02396 hexaprenyldihydroxybenzoate methyltransferase

Probab=95.41  E-value=0.012  Score=50.31  Aligned_cols=27  Identities=22%  Similarity=0.327  Sum_probs=22.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      +.+.+|||+|||+|..++.++..+...
T Consensus       130 ~~g~~ILDIGCG~G~~s~~La~~g~~V  156 (322)
T PLN02396        130 FEGLKFIDIGCGGGLLSEPLARMGATV  156 (322)
T ss_pred             CCCCEEEEeeCCCCHHHHHHHHcCCEE
Confidence            578899999999999999888766443

>TIGR00095 RNA methyltransferase, RsmD family

Probab=95.40  E-value=0.015  Score=45.78  Aligned_cols=27  Identities=22%  Similarity=0.365  Sum_probs=24.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.|++||||+||+|.+|+.++.-|++
T Consensus        47 ~~~g~~vLDLfaGsG~lglea~srga~   73 (189)
T TIGR00095        47 EIQGAHLLDVFAGSGLLGEEALSRGAK   73 (189)
T ss_pred             hcCCCEEEEecCCCcHHHHHHHhCCCC
Confidence            468999999999999999999988764

This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.

>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]

Probab=95.36  E-value=0.014  Score=51.49  Aligned_cols=30  Identities=17%  Similarity=0.362  Sum_probs=27.3

Q ss_pred             CccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          117 GMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       117 ~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +...|++|.||+.|||.|++++++|..|++
T Consensus       172 N~sDF~~kiVlDVGaGSGILS~FAaqAGA~  201 (517)
T KOG1500|consen  172 NHSDFQDKIVLDVGAGSGILSFFAAQAGAK  201 (517)
T ss_pred             cccccCCcEEEEecCCccHHHHHHHHhCcc
Confidence            346799999999999999999999999976

>TIGR00477 tehB tellurite resistance protein TehB

Probab=95.26  E-value=0.017  Score=45.35  Aligned_cols=27  Identities=19%  Similarity=0.086  Sum_probs=22.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .++.+|||+|||+|..++.++..+..+
T Consensus        29 ~~~~~vLDiGcG~G~~a~~la~~g~~V   55 (195)
T TIGR00477        29 VAPCKTLDLGCGQGRNSLYLSLAGYDV   55 (195)
T ss_pred             CCCCcEEEeCCCCCHHHHHHHHCCCeE
Confidence            456799999999999999999876544

Part of a tellurite-reducing operon tehA and tehB

>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional

Probab=95.03  E-value=0.031  Score=45.82  Aligned_cols=27  Identities=19%  Similarity=0.203  Sum_probs=22.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++++|||+|||+|...+.++..+..
T Consensus        27 ~~~~~~VLEIG~G~G~lt~~L~~~~~~   53 (258)
T PRK14896         27 DTDGDPVLEIGPGKGALTDELAKRAKK   53 (258)
T ss_pred             CCCcCeEEEEeCccCHHHHHHHHhCCE
Confidence            346789999999999999999887543

>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase

Probab=95.02  E-value=0.08  Score=45.60  Aligned_cols=24  Identities=17%  Similarity=0.148  Sum_probs=20.2

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++||||+||+|..++.++.....
T Consensus       198 ~~~vlDl~~G~G~~sl~la~~~~~  221 (353)
T TIGR02143       198 KGDLLELYCGNGNFSLALAQNFRR  221 (353)
T ss_pred             CCcEEEEeccccHHHHHHHHhCCE
Confidence            447999999999999999876543

This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.

>PRK04266 fibrillarin; Provisional

Probab=95.02  E-value=0.034  Score=45.19  Aligned_cols=25  Identities=20%  Similarity=0.256  Sum_probs=21.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -+|.+|||+|||||...+.++...+
T Consensus        71 ~~g~~VlD~G~G~G~~~~~la~~v~   95 (226)
T PRK04266         71 KKGSKVLYLGAASGTTVSHVSDIVE   95 (226)
T ss_pred             CCCCEEEEEccCCCHHHHHHHHhcC
Confidence            4678999999999999999988653

>PRK12335 tellurite resistance protein TehB; Provisional

Probab=94.98  E-value=0.02  Score=47.51  Aligned_cols=28  Identities=18%  Similarity=0.050  Sum_probs=23.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      +++++|||+|||+|..++.++..+....
T Consensus       119 ~~~~~vLDlGcG~G~~~~~la~~g~~V~  146 (287)
T PRK12335        119 VKPGKALDLGCGQGRNSLYLALLGFDVT  146 (287)
T ss_pred             cCCCCEEEeCCCCCHHHHHHHHCCCEEE
Confidence            4567999999999999999998775443

>PRK07402 precorrin-6B methylase; Provisional

Probab=94.98  E-value=0.025  Score=44.06  Aligned_cols=25  Identities=16%  Similarity=0.223  Sum_probs=21.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++.+|||+|||+|..++.++...+
T Consensus        39 ~~~~~VLDiG~G~G~~~~~la~~~~   63 (196)
T PRK07402         39 EPDSVLWDIGAGTGTIPVEAGLLCP   63 (196)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            3568999999999999998887654

>TIGR02072 BioC biotin biosynthesis protein BioC

Probab=94.97  E-value=0.044  Score=42.61  Aligned_cols=26  Identities=15%  Similarity=0.388  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+++|||||||+|.....++..++.
T Consensus        33 ~~~~~vLDlG~G~G~~~~~l~~~~~~   58 (240)
T TIGR02072        33 FIPASVLDIGCGTGYLTRALLKRFPQ   58 (240)
T ss_pred             CCCCeEEEECCCccHHHHHHHHhCCC
Confidence            45689999999999999888887754

This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.

>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase

Probab=94.90  E-value=0.042  Score=43.00  Aligned_cols=46  Identities=13%  Similarity=0.218  Sum_probs=31.4

Q ss_pred             echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      |........|+...........++.+|||+|||+|...+.++..+.
T Consensus        23 ~~~~~~~~~~i~~~~~~~~~~~~~~~vLdlG~G~G~~~~~l~~~~~   68 (224)
T TIGR01983        23 HKMNPLRLDYIRDTIRKNKKPLFGLRVLDVGCGGGLLSEPLARLGA   68 (224)
T ss_pred             HHhhHHHHHHHHHHHHhcccCCCCCeEEEECCCCCHHHHHHHhcCC
Confidence            4445555677776542222235688999999999999888776554

This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.

>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated

Probab=94.74  E-value=0.028  Score=44.07  Aligned_cols=27  Identities=22%  Similarity=0.220  Sum_probs=21.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++.+|||+|||+|.....++..+..
T Consensus        61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~   87 (230)
T PRK07580         61 DLTGLRILDAGCGVGSLSIPLARRGAK   87 (230)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHcCCE
Confidence            356789999999999999888776543

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.65  E-value=0.056  Score=43.04  Aligned_cols=39  Identities=21%  Similarity=0.322  Sum_probs=27.9

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++..+..++....    ..-++.+|||+|||+|.....++.+.
T Consensus        60 ~~p~~~~~~~~~l----~~~~g~~VLdIG~GsG~~t~~la~~~   98 (212)
T PRK13942         60 SAIHMVAIMCELL----DLKEGMKVLEIGTGSGYHAAVVAEIV   98 (212)
T ss_pred             CcHHHHHHHHHHc----CCCCcCEEEEECCcccHHHHHHHHhc
Confidence            4455555555531    23467899999999999998888764

>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G

Probab=94.64  E-value=0.027  Score=44.67  Aligned_cols=24  Identities=38%  Similarity=0.621  Sum_probs=20.8

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++++++|+|.|++||.+|.+.|.
T Consensus        49 ~~~~lDiGSGaGfPGipLaI~~p~   72 (184)
T PF02527_consen   49 GKKVLDIGSGAGFPGIPLAIARPD   72 (184)
T ss_dssp             CSEEEEETSTTTTTHHHHHHH-TT
T ss_pred             CceEEecCCCCCChhHHHHHhCCC
Confidence            338999999999999999999886

Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.

>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed

Probab=94.64  E-value=0.032  Score=44.05  Aligned_cols=25  Identities=20%  Similarity=0.098  Sum_probs=21.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+|||+|||+|...+.++...+.
T Consensus        40 ~~~~VLDiGcGtG~~~~~la~~~p~   64 (202)
T PRK00121         40 DAPIHLEIGFGKGEFLVEMAKANPD   64 (202)
T ss_pred             CCCeEEEEccCCCHHHHHHHHHCCC
Confidence            5679999999999999988876553

>TIGR00755 ksgA dimethyladenosine transferase

Probab=94.63  E-value=0.052  Score=44.17  Aligned_cols=27  Identities=22%  Similarity=0.274  Sum_probs=22.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .++.+|||+|||+|.....++..++..
T Consensus        28 ~~~~~VLEiG~G~G~lt~~L~~~~~~v   54 (253)
T TIGR00755        28 LEGDVVLEIGPGLGALTEPLLKRAKKV   54 (253)
T ss_pred             CCcCEEEEeCCCCCHHHHHHHHhCCcE
Confidence            467899999999999999998877653

Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase

>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase

Probab=94.62  E-value=0.031  Score=44.10  Aligned_cols=26  Identities=27%  Similarity=0.419  Sum_probs=21.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|.....++..+.
T Consensus        53 ~~~~~~vLDiGcG~G~~~~~la~~~~   78 (219)
T TIGR02021        53 PLKGKRVLDAGCGTGLLSIELAKRGA   78 (219)
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHCCC
Confidence            35689999999999999988887544

This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.

>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional

Probab=94.62  E-value=0.032  Score=44.60  Aligned_cols=22  Identities=18%  Similarity=0.252  Sum_probs=18.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhh
Q 031904          121 LHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      ..+++|||||||+|..|+.++.
T Consensus        52 ~~~~~vLDl~~GsG~l~l~~ls   73 (199)
T PRK10909         52 IVDARCLDCFAGSGALGLEALS   73 (199)
T ss_pred             cCCCEEEEcCCCccHHHHHHHH
Confidence            4578999999999999996443

>PRK14103 trans-aconitate 2-methyltransferase; Provisional

Probab=94.59  E-value=0.067  Score=43.29  Aligned_cols=25  Identities=24%  Similarity=0.574  Sum_probs=21.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+.+|||+|||+|.....++...|
T Consensus        28 ~~~~~vLDlGcG~G~~~~~l~~~~p   52 (255)
T PRK14103         28 ERARRVVDLGCGPGNLTRYLARRWP   52 (255)
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCC
Confidence            4678999999999999988887644

>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=94.52  E-value=0.031  Score=45.34  Aligned_cols=27  Identities=11%  Similarity=0.035  Sum_probs=22.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ++.+|||+|||+|...+.++..+....
T Consensus        44 ~~~~vLDiGcG~G~~a~~la~~g~~v~   70 (255)
T PRK11036         44 RPLRVLDAGGGEGQTAIKLAELGHQVI   70 (255)
T ss_pred             CCCEEEEeCCCchHHHHHHHHcCCEEE
Confidence            467999999999999999988775543

>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]

Probab=94.48  E-value=0.029  Score=45.76  Aligned_cols=24  Identities=29%  Similarity=0.625  Sum_probs=21.8

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++++++|||.|++||.+|.+.|.
T Consensus        68 ~~~~~DIGSGaGfPGipLAI~~p~   91 (215)
T COG0357          68 AKRVLDIGSGAGFPGIPLAIAFPD   91 (215)
T ss_pred             CCEEEEeCCCCCCchhhHHHhccC
Confidence            799999999999999999977664

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=94.47  E-value=0.038  Score=43.24  Aligned_cols=24  Identities=29%  Similarity=0.414  Sum_probs=21.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..++.+|||+|||+|..++.+++.
T Consensus        38 ~~~~~~vlDlG~GtG~~s~~~a~~   61 (198)
T PRK00377         38 LRKGDMILDIGCGTGSVTVEASLL   61 (198)
T ss_pred             CCCcCEEEEeCCcCCHHHHHHHHH
Confidence            457889999999999999998875

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=94.44  E-value=0.071  Score=42.51  Aligned_cols=25  Identities=20%  Similarity=0.385  Sum_probs=20.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..++.+|||||||||.....++...
T Consensus        49 ~~~~~~VLDlG~GtG~~t~~l~~~~   73 (209)
T PRK11188         49 FKPGMTVVDLGAAPGGWSQYAVTQI   73 (209)
T ss_pred             CCCCCEEEEEcccCCHHHHHHHHHc
Confidence            4567899999999999988777654

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=94.42  E-value=0.075  Score=41.97  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=20.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -.+.+|||+|||+|..+..++.+.
T Consensus        71 ~~~~~VLDiG~GsG~~~~~la~~~   94 (205)
T PRK13944         71 RPGMKILEVGTGSGYQAAVCAEAI   94 (205)
T ss_pred             CCCCEEEEECcCccHHHHHHHHhc
Confidence            356899999999999998888754

>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase

Probab=94.38  E-value=0.067  Score=42.58  Aligned_cols=23  Identities=22%  Similarity=0.078  Sum_probs=19.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .++.+|||+|||+|.....++..
T Consensus        42 ~~~~~VLDiGCG~G~~~~~L~~~   64 (204)
T TIGR03587        42 PKIASILELGANIGMNLAALKRL   64 (204)
T ss_pred             CCCCcEEEEecCCCHHHHHHHHh
Confidence            46779999999999999888765

Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.35  E-value=0.039  Score=42.64  Aligned_cols=26  Identities=19%  Similarity=0.350  Sum_probs=21.2

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..-+|++|||+|||+|...+.++...
T Consensus        29 ~i~~g~~VLDiG~GtG~~~~~l~~~~   54 (188)
T TIGR00438        29 LIKPGDTVLDLGAAPGGWSQVAVEQV   54 (188)
T ss_pred             ccCCCCEEEEecCCCCHHHHHHHHHh
Confidence            44678999999999999888777654

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=94.31  E-value=0.02  Score=47.98  Aligned_cols=20  Identities=30%  Similarity=0.602  Sum_probs=16.9

Q ss_pred             CeEEEeCCCCChhHHHHhhc
Q 031904          124 KKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       124 k~VLELGaGtGL~Gi~aa~l  143 (150)
                      +++|+|||||||.|..+-.+
T Consensus       127 ~~~lDLGCGTGL~G~~lR~~  146 (287)
T COG4976         127 RRMLDLGCGTGLTGEALRDM  146 (287)
T ss_pred             ceeeecccCcCcccHhHHHH
Confidence            79999999999999876443

>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific

Probab=94.27  E-value=0.065  Score=42.45  Aligned_cols=42  Identities=14%  Similarity=0.117  Sum_probs=29.9

Q ss_pred             eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++.+..+.+++.+..     .-.+++|||+|||+|..++.++...+
T Consensus        69 p~~~~~~l~~~~l~~~-----~~~~~~ilDig~G~G~~~~~l~~~~~  110 (251)
T TIGR03534        69 PRPDTEELVEAALERL-----KKGPLRVLDLGTGSGAIALALAKERP  110 (251)
T ss_pred             CCCChHHHHHHHHHhc-----ccCCCeEEEEeCcHhHHHHHHHHHCC
Confidence            3455666666666532     12456999999999999999988654

Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.

>PRK10258 biotin biosynthesis protein BioC; Provisional

Probab=94.20  E-value=0.04  Score=44.24  Aligned_cols=24  Identities=13%  Similarity=0.210  Sum_probs=19.2

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|.....++..+.
T Consensus        42 ~~~~vLDiGcG~G~~~~~l~~~~~   65 (251)
T PRK10258         42 KFTHVLDAGCGPGWMSRYWRERGS   65 (251)
T ss_pred             CCCeEEEeeCCCCHHHHHHHHcCC
Confidence            467999999999988777766543

>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional

Probab=94.17  E-value=0.063  Score=46.25  Aligned_cols=23  Identities=22%  Similarity=0.531  Sum_probs=20.3

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCC
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+|||||||+|..++.++...|
T Consensus       197 ~g~VLDlGCG~G~ls~~la~~~p  219 (342)
T PRK09489        197 KGKVLDVGCGAGVLSAVLARHSP  219 (342)
T ss_pred             CCeEEEeccCcCHHHHHHHHhCC
Confidence            34799999999999999998876

>PLN02585 magnesium protoporphyrin IX methyltransferase

Probab=94.17  E-value=0.043  Score=46.86  Aligned_cols=27  Identities=19%  Similarity=0.171  Sum_probs=22.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++.+|||+|||+|..++.++..+..
T Consensus       142 ~~~~~~VLDlGcGtG~~a~~la~~g~~  168 (315)
T PLN02585        142 SLAGVTVCDAGCGTGSLAIPLALEGAI  168 (315)
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHCCCE
Confidence            356889999999999999999987644

>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional

Probab=94.15  E-value=0.09  Score=41.58  Aligned_cols=35  Identities=17%  Similarity=0.282  Sum_probs=25.7

Q ss_pred             HHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       106 La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..+|+....    ...++++|||+|||+|..++.++..+
T Consensus        36 ~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~l~~~~   70 (233)
T PRK05134         36 RLNYIREHA----GGLFGKRVLDVGCGGGILSESMARLG   70 (233)
T ss_pred             HHHHHHHhc----cCCCCCeEEEeCCCCCHHHHHHHHcC
Confidence            345665532    24578999999999999988887654

>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed

Probab=93.91  E-value=0.061  Score=45.29  Aligned_cols=27  Identities=19%  Similarity=0.111  Sum_probs=22.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .++++|||||||+|..++.+|..+...
T Consensus       172 ~~~~~VLDl~cG~G~~sl~la~~~~~V  198 (315)
T PRK03522        172 LPPRSMWDLFCGVGGFGLHCATPGMQL  198 (315)
T ss_pred             cCCCEEEEccCCCCHHHHHHHhcCCEE
Confidence            357899999999999999999866433

>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase

Probab=93.75  E-value=0.057  Score=42.61  Aligned_cols=23  Identities=9%  Similarity=0.016  Sum_probs=19.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .++++|||+|||+|..++.++..
T Consensus        44 ~~~~~vLDiGcG~G~~~~~la~~   66 (231)
T TIGR02752        44 QAGTSALDVCCGTADWSIALAEA   66 (231)
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHH
Confidence            35789999999999999888764

MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.

>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]

Probab=93.73  E-value=0.037  Score=46.34  Aligned_cols=22  Identities=27%  Similarity=0.475  Sum_probs=20.5

Q ss_pred             eEEEeCCCCChhHHHHhhcCCc
Q 031904          125 KIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       125 ~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +|||||||+|..+|.+++-.+.
T Consensus       113 ~ilDlGTGSG~iai~la~~~~~  134 (280)
T COG2890         113 RILDLGTGSGAIAIALAKEGPD  134 (280)
T ss_pred             cEEEecCChHHHHHHHHhhCcC
Confidence            8999999999999999998873

>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals

Probab=93.66  E-value=0.091  Score=45.26  Aligned_cols=29  Identities=17%  Similarity=0.197  Sum_probs=26.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      .++||+|||+|||-|--+.-++.-|++.+
T Consensus       113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~V  141 (315)
T PF08003_consen  113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSV  141 (315)
T ss_pred             CcCCCEEEEecCCCcHHHHHHhhcCCCEE
Confidence            68999999999999999999998888753

The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification

>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed

Probab=93.64  E-value=0.1  Score=46.10  Aligned_cols=41  Identities=10%  Similarity=-0.110  Sum_probs=28.5

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      +-.|.+++....    ...++.+|||||||+|..++.+|..+...
T Consensus       282 ~e~l~~~vl~~l----~~~~~~~VLDlgcGtG~~sl~la~~~~~V  322 (443)
T PRK13168        282 NQKMVARALEWL----DPQPGDRVLDLFCGLGNFTLPLARQAAEV  322 (443)
T ss_pred             HHHHHHHHHHHh----cCCCCCEEEEEeccCCHHHHHHHHhCCEE
Confidence            344555555431    12456899999999999999998876443

>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4)

Probab=93.53  E-value=0.11  Score=43.50  Aligned_cols=38  Identities=16%  Similarity=0.290  Sum_probs=24.5

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      |-....+++...    ..+-.|.+|||+|||.|-+.+.+|.-
T Consensus        46 AQ~~k~~~~~~~----~~l~~G~~vLDiGcGwG~~~~~~a~~   83 (273)
T PF02353_consen   46 AQERKLDLLCEK----LGLKPGDRVLDIGCGWGGLAIYAAER   83 (273)
T ss_dssp             HHHHHHHHHHTT----TT--TT-EEEEES-TTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHH----hCCCCCCEEEEeCCCccHHHHHHHHH
Confidence            333444455543    24557899999999999999998875

All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....

>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]

Probab=93.52  E-value=0.06  Score=45.70  Aligned_cols=26  Identities=23%  Similarity=0.517  Sum_probs=22.9

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+-.|++|||+|||.|-+.+-+|...
T Consensus        69 ~L~~G~~lLDiGCGWG~l~~~aA~~y   94 (283)
T COG2230          69 GLKPGMTLLDIGCGWGGLAIYAAEEY   94 (283)
T ss_pred             CCCCCCEEEEeCCChhHHHHHHHHHc
Confidence            34578999999999999999999875

>PLN02672 methionine S-methyltransferase

Probab=93.50  E-value=0.08  Score=52.16  Aligned_cols=42  Identities=19%  Similarity=0.221  Sum_probs=31.2

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +-+..|.+.|...   ....+++++|||||||+|..+|.++...+
T Consensus       100 peTE~lve~L~~~---~~~~~~~~~VLDlG~GSG~Iai~La~~~~  141 (1082)
T PLN02672        100 DWSFTFYEGLNRH---PDSIFRDKTVAELGCGNGWISIAIAEKWL  141 (1082)
T ss_pred             hhHHHHHHHHHhc---ccccCCCCEEEEEecchHHHHHHHHHHCC
Confidence            3456677775442   12346788999999999999999998765

>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=93.27  E-value=0.12  Score=41.67  Aligned_cols=40  Identities=23%  Similarity=0.341  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -+-.|.+++...    ....++.+|||+|||+|..++.++...+
T Consensus        92 ~te~l~~~~~~~----~~~~~~~~vLDiG~GsG~~~~~la~~~~  131 (275)
T PRK09328         92 ETEELVEWALEA----LLLKEPLRVLDLGTGSGAIALALAKERP  131 (275)
T ss_pred             CcHHHHHHHHHh----ccccCCCEEEEEcCcHHHHHHHHHHHCC
Confidence            344556655532    1234567999999999999999988764

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=93.23  E-value=0.075  Score=43.24  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=19.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      -.|++|||+|||+|+..+.++..
T Consensus        76 ~~g~~VLDiG~G~G~~~~~~a~~   98 (272)
T PRK11873         76 KPGETVLDLGSGGGFDCFLAARR   98 (272)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHH
Confidence            46889999999999988876654

>PRK06202 hypothetical protein; Provisional

Probab=93.20  E-value=0.076  Score=42.31  Aligned_cols=23  Identities=13%  Similarity=0.072  Sum_probs=18.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .++.+|||||||+|.....++..
T Consensus        59 ~~~~~iLDlGcG~G~~~~~L~~~   81 (232)
T PRK06202         59 DRPLTLLDIGCGGGDLAIDLARW   81 (232)
T ss_pred             CCCcEEEEeccCCCHHHHHHHHH
Confidence            35679999999999988777653

>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated

Probab=93.07  E-value=0.33  Score=41.89  Aligned_cols=41  Identities=12%  Similarity=-0.016  Sum_probs=27.1

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .+-.|.+++....     ...+.+||||+||+|..++.++......
T Consensus       191 ~~e~l~~~v~~~~-----~~~~~~vLDl~~G~G~~sl~la~~~~~v  231 (362)
T PRK05031        191 VNEKMLEWALDAT-----KGSKGDLLELYCGNGNFTLALARNFRRV  231 (362)
T ss_pred             HHHHHHHHHHHHh-----hcCCCeEEEEeccccHHHHHHHhhCCEE
Confidence            3445555555421     1123579999999999999888765543

>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional

Probab=93.05  E-value=0.092  Score=42.56  Aligned_cols=22  Identities=18%  Similarity=0.205  Sum_probs=18.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhh
Q 031904          121 LHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      ..+.+|||+|||+|...+.++.
T Consensus        55 ~~~~~vLDlGcGtG~~~~~l~~   76 (247)
T PRK15451         55 QPGTQVYDLGCSLGAATLSVRR   76 (247)
T ss_pred             CCCCEEEEEcccCCHHHHHHHH
Confidence            3678999999999998887766

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=93.04  E-value=0.12  Score=42.05  Aligned_cols=30  Identities=20%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ..-.+.+|||+|||+|-..-++|.+..+++
T Consensus        69 ~~~~g~~VLEIGtGsGY~aAvla~l~~~V~   98 (209)
T COG2518          69 ELKPGDRVLEIGTGSGYQAAVLARLVGRVV   98 (209)
T ss_pred             CCCCCCeEEEECCCchHHHHHHHHHhCeEE
Confidence            345679999999999999999999887654

>PLN02781 Probable caffeoyl-CoA O-methyltransferase

Probab=92.91  E-value=0.09  Score=42.69  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=20.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..+.++|||+|||||..++.++...
T Consensus        66 ~~~~~~vLEiGt~~G~s~l~la~~~   90 (234)
T PLN02781         66 IMNAKNTLEIGVFTGYSLLTTALAL   90 (234)
T ss_pred             HhCCCEEEEecCcccHHHHHHHHhC
Confidence            3567899999999999888777643

>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific

Probab=92.91  E-value=0.085  Score=44.04  Aligned_cols=23  Identities=26%  Similarity=0.515  Sum_probs=20.5

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCC
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +++|||+|||+|..++.++...+
T Consensus       122 ~~~vLDlG~GsG~i~~~la~~~~  144 (284)
T TIGR03533       122 VKRILDLCTGSGCIAIACAYAFP  144 (284)
T ss_pred             CCEEEEEeCchhHHHHHHHHHCC
Confidence            47899999999999999998765

Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.

>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB

Probab=92.87  E-value=0.082  Score=45.78  Aligned_cols=26  Identities=15%  Similarity=0.124  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+++|||||||+|..++.+|..+..
T Consensus       232 ~~~~~vLDL~cG~G~~~l~la~~~~~  257 (374)
T TIGR02085       232 IPVTQMWDLFCGVGGFGLHCAGPDTQ  257 (374)
T ss_pred             cCCCEEEEccCCccHHHHHHhhcCCe
Confidence            45689999999999999999876543

This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.

>TIGR00740 methyltransferase, putative

Probab=92.77  E-value=0.11  Score=41.51  Aligned_cols=24  Identities=13%  Similarity=0.138  Sum_probs=19.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..+.+|||+|||+|...+.++...
T Consensus        52 ~~~~~iLDlGcG~G~~~~~l~~~~   75 (239)
T TIGR00740        52 TPDSNVYDLGCSRGAATLSARRNI   75 (239)
T ss_pred             CCCCEEEEecCCCCHHHHHHHHhc
Confidence            367799999999999988877653

A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.

>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed

Probab=92.76  E-value=0.11  Score=40.59  Aligned_cols=24  Identities=21%  Similarity=0.308  Sum_probs=21.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+|||+|||+|...+.++..++
T Consensus        51 ~~~~vldiG~G~G~~~~~l~~~~~   74 (239)
T PRK00216         51 PGDKVLDLACGTGDLAIALAKAVG   74 (239)
T ss_pred             CCCeEEEeCCCCCHHHHHHHHHcC
Confidence            568999999999999998888764

>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific

Probab=92.73  E-value=0.092  Score=43.08  Aligned_cols=23  Identities=26%  Similarity=0.351  Sum_probs=19.6

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCC
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +.+|||||||+|..++.++...+
T Consensus        87 ~~~vLDlg~GsG~i~l~la~~~~  109 (251)
T TIGR03704        87 TLVVVDLCCGSGAVGAALAAALD  109 (251)
T ss_pred             CCEEEEecCchHHHHHHHHHhCC
Confidence            45899999999999999887654

This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.

>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family

Probab=92.67  E-value=0.17  Score=40.66  Aligned_cols=48  Identities=13%  Similarity=-0.006  Sum_probs=34.8

Q ss_pred             eeeec---hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904           97 SVMWD---SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus        97 ~~vW~---asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ...|+   ....|.+|+...     ..-++.+||++|||.|--.+.+|..|..+.|
T Consensus        11 ~~~w~~~~p~~~l~~~~~~l-----~~~~~~rvLd~GCG~G~da~~LA~~G~~V~g   61 (213)
T TIGR03840        11 QIGFHQSEVNPLLVKHWPAL-----GLPAGARVFVPLCGKSLDLAWLAEQGHRVLG   61 (213)
T ss_pred             CCCCccCCCCHHHHHHHHhh-----CCCCCCeEEEeCCCchhHHHHHHhCCCeEEE
Confidence            34664   456777776641     1126679999999999999999998876654

Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.

>PTZ00338 dimethyladenosine transferase-like protein; Provisional

Probab=92.60  E-value=0.15  Score=43.07  Aligned_cols=28  Identities=14%  Similarity=0.113  Sum_probs=22.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..++.+|||+|||+|.+...++..+.+.
T Consensus        34 ~~~~~~VLEIG~G~G~LT~~Ll~~~~~V   61 (294)
T PTZ00338         34 IKPTDTVLEIGPGTGNLTEKLLQLAKKV   61 (294)
T ss_pred             CCCcCEEEEecCchHHHHHHHHHhCCcE
Confidence            3467899999999999998887765543

>PRK05785 hypothetical protein; Provisional

Probab=92.52  E-value=0.11  Score=41.86  Aligned_cols=22  Identities=18%  Similarity=0.215  Sum_probs=18.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .+.+|||||||||.....++..
T Consensus        51 ~~~~VLDlGcGtG~~~~~l~~~   72 (226)
T PRK05785         51 RPKKVLDVAAGKGELSYHFKKV   72 (226)
T ss_pred             CCCeEEEEcCCCCHHHHHHHHh
Confidence            3679999999999998887765

>PRK13255 thiopurine S-methyltransferase; Reviewed

Probab=92.51  E-value=0.19  Score=40.49  Aligned_cols=43  Identities=14%  Similarity=0.043  Sum_probs=31.2

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ....|.+|+...     ..-++.+||++|||.|--.+.+|..|-.+.|
T Consensus        22 p~~~L~~~~~~~-----~~~~~~rvL~~gCG~G~da~~LA~~G~~V~a   64 (218)
T PRK13255         22 VNPLLQKYWPAL-----ALPAGSRVLVPLCGKSLDMLWLAEQGHEVLG   64 (218)
T ss_pred             CCHHHHHHHHhh-----CCCCCCeEEEeCCCChHhHHHHHhCCCeEEE
Confidence            345566666541     1235679999999999999999998876654

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=92.43  E-value=0.21  Score=42.82  Aligned_cols=25  Identities=20%  Similarity=0.360  Sum_probs=21.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++.+|||+|||+|..++.++...+
T Consensus        79 ~~g~~VLDIG~GtG~~a~~LA~~~~  103 (322)
T PRK13943         79 DKGMRVLEIGGGTGYNAAVMSRVVG  103 (322)
T ss_pred             CCCCEEEEEeCCccHHHHHHHHhcC
Confidence            4678999999999999998887654

>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB

Probab=92.35  E-value=0.12  Score=41.48  Aligned_cols=30  Identities=30%  Similarity=0.210  Sum_probs=23.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      .+++.++|+||||.|--++.+|..|-.+.|
T Consensus        28 ~~~~g~~LDlgcG~GRNalyLA~~G~~VtA   57 (192)
T PF03848_consen   28 LLKPGKALDLGCGEGRNALYLASQGFDVTA   57 (192)
T ss_dssp             TS-SSEEEEES-TTSHHHHHHHHTT-EEEE
T ss_pred             hcCCCcEEEcCCCCcHHHHHHHHCCCeEEE
Confidence            467889999999999999999999977654

When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.

>PLN02244 tocopherol O-methyltransferase

Probab=92.30  E-value=0.13  Score=43.96  Aligned_cols=23  Identities=26%  Similarity=0.417  Sum_probs=19.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      -++++|||+|||+|...+.++..
T Consensus       117 ~~~~~VLDiGCG~G~~~~~La~~  139 (340)
T PLN02244        117 KRPKRIVDVGCGIGGSSRYLARK  139 (340)
T ss_pred             CCCCeEEEecCCCCHHHHHHHHh
Confidence            46789999999999999888774

>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2

Probab=92.24  E-value=0.21  Score=40.27  Aligned_cols=27  Identities=22%  Similarity=0.404  Sum_probs=20.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .-+|.+|||+|||+|-..-++|.+..+
T Consensus        70 l~pg~~VLeIGtGsGY~aAlla~lvg~   96 (209)
T PF01135_consen   70 LKPGDRVLEIGTGSGYQAALLAHLVGP   96 (209)
T ss_dssp             C-TT-EEEEES-TTSHHHHHHHHHHST
T ss_pred             cCCCCEEEEecCCCcHHHHHHHHhcCc
Confidence            457889999999999999999887543

1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=92.12  E-value=0.12  Score=45.45  Aligned_cols=26  Identities=27%  Similarity=0.318  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++++|||||||+|..+..++..+..
T Consensus        36 ~~~~~vLDlGcG~G~~~~~la~~~~~   61 (475)
T PLN02336         36 YEGKSVLELGAGIGRFTGELAKKAGQ   61 (475)
T ss_pred             cCCCEEEEeCCCcCHHHHHHHhhCCE
Confidence            35689999999999999998876544

>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional

Probab=92.02  E-value=0.13  Score=48.21  Aligned_cols=26  Identities=15%  Similarity=0.082  Sum_probs=23.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+|++|||||||||..++.++..|..
T Consensus       537 ~~g~rVLDlf~gtG~~sl~aa~~Ga~  562 (702)
T PRK11783        537 AKGKDFLNLFAYTGTASVHAALGGAK  562 (702)
T ss_pred             cCCCeEEEcCCCCCHHHHHHHHCCCC
Confidence            46899999999999999999987654

>TIGR00536 hemK_fam HemK family putative methylases

Probab=91.99  E-value=0.11  Score=42.97  Aligned_cols=22  Identities=27%  Similarity=0.561  Sum_probs=20.0

Q ss_pred             CeEEEeCCCCChhHHHHhhcCC
Q 031904          124 KKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       124 k~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++|||||||+|..++.++...+
T Consensus       116 ~~vLDlG~GsG~i~l~la~~~~  137 (284)
T TIGR00536       116 LHILDLGTGSGCIALALAYEFP  137 (284)
T ss_pred             CEEEEEeccHhHHHHHHHHHCC
Confidence            6899999999999999998765

The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.

>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional

Probab=91.82  E-value=0.28  Score=42.76  Aligned_cols=23  Identities=17%  Similarity=0.538  Sum_probs=19.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      -+|.+|||+|||+|...+.++..
T Consensus       166 ~~g~rVLDIGcG~G~~a~~la~~  188 (383)
T PRK11705        166 KPGMRVLDIGCGWGGLARYAAEH  188 (383)
T ss_pred             CCCCEEEEeCCCccHHHHHHHHH
Confidence            46789999999999999888764

>PLN02233 ubiquinone biosynthesis methyltransferase

Probab=91.68  E-value=0.16  Score=41.76  Aligned_cols=23  Identities=17%  Similarity=0.319  Sum_probs=19.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .++.+|||+|||+|...+.++..
T Consensus        72 ~~~~~VLDlGcGtG~~~~~la~~   94 (261)
T PLN02233         72 KMGDRVLDLCCGSGDLAFLLSEK   94 (261)
T ss_pred             CCCCEEEEECCcCCHHHHHHHHH
Confidence            35789999999999988877764

>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases

Probab=91.63  E-value=0.27  Score=39.51  Aligned_cols=40  Identities=20%  Similarity=0.335  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+..-+++|..-    -...+.|+|||+|++||..+|.+|...|
T Consensus        29 i~~~~g~lL~~l----~~~~~~k~vLEIGt~~GySal~la~~l~   68 (205)
T PF01596_consen   29 ISPETGQLLQML----VRLTRPKRVLEIGTFTGYSALWLAEALP   68 (205)
T ss_dssp             HHHHHHHHHHHH----HHHHT-SEEEEESTTTSHHHHHHHHTST
T ss_pred             cCHHHHHHHHHH----HHhcCCceEEEeccccccHHHHHHHhhc
Confidence            455555555542    1246779999999999999999997654

The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....

>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []

Probab=91.48  E-value=0.28  Score=43.95  Aligned_cols=24  Identities=21%  Similarity=0.404  Sum_probs=19.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+++.|+++|||+|++.+.+++.+
T Consensus       185 ~~~~vVldVGAGrGpL~~~al~A~  208 (448)
T PF05185_consen  185 SKDKVVLDVGAGRGPLSMFALQAG  208 (448)
T ss_dssp             ETT-EEEEES-TTSHHHHHHHHTT
T ss_pred             ccceEEEEeCCCccHHHHHHHHHH
Confidence            367899999999999999988876

These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....

>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional

Probab=91.44  E-value=0.18  Score=44.39  Aligned_cols=25  Identities=12%  Similarity=-0.072  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+|++|||||||||-.+|.++.-+.
T Consensus       219 ~~g~rVLDlfsgtG~~~l~aa~~ga  243 (396)
T PRK15128        219 VENKRVLNCFSYTGGFAVSALMGGC  243 (396)
T ss_pred             cCCCeEEEeccCCCHHHHHHHhCCC
Confidence            4689999999999999988776443

>PHA03412 putative methyltransferase; Provisional

Probab=91.42  E-value=0.1  Score=43.40  Aligned_cols=23  Identities=17%  Similarity=0.146  Sum_probs=19.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+.+|||+|||+|.+++.++...
T Consensus        49 ~~grVLDlG~GSG~Lalala~~~   71 (241)
T PHA03412         49 TSGSVVDLCAGIGGLSFAMVHMM   71 (241)
T ss_pred             CCCEEEEccChHHHHHHHHHHhc
Confidence            36799999999999999988753

>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional

Probab=91.37  E-value=0.28  Score=43.86  Aligned_cols=37  Identities=22%  Similarity=0.224  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +-.+.+++...      ..++.+|||||||+|..++.++...+
T Consensus       238 TE~LVe~aL~~------l~~~~rVLDLGcGSG~IaiaLA~~~p  274 (423)
T PRK14966        238 TEHLVEAVLAR------LPENGRVWDLGTGSGAVAVTVALERP  274 (423)
T ss_pred             HHHHHHHhhhc------cCCCCEEEEEeChhhHHHHHHHHhCC
Confidence            34556655542      12456999999999999998886543

>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases

Probab=91.34  E-value=0.2  Score=38.57  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|.....++...+
T Consensus        39 ~~~~vldiG~G~G~~~~~~~~~~~   62 (223)
T TIGR01934        39 KGQKVLDVACGTGDLAIELAKSAP   62 (223)
T ss_pred             CCCeEEEeCCCCChhHHHHHHhcC
Confidence            688999999999999888877665

Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.

>PHA03411 putative methyltransferase; Provisional

Probab=91.31  E-value=0.16  Score=43.05  Aligned_cols=22  Identities=18%  Similarity=0.203  Sum_probs=18.6

Q ss_pred             CCeEEEeCCCCChhHHHHhhcC
Q 031904          123 GKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      +.+|||||||+|.+++.++...
T Consensus        65 ~grVLDLGcGsGilsl~la~r~   86 (279)
T PHA03411         65 TGKVLDLCAGIGRLSFCMLHRC   86 (279)
T ss_pred             CCeEEEcCCCCCHHHHHHHHhC
Confidence            4689999999999998887653

>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional

Probab=90.98  E-value=0.22  Score=40.97  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=18.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhh
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      .-++.+|||+|||+|...+.++.
T Consensus        50 l~~~~~VLDiGcG~G~~a~~la~   72 (263)
T PTZ00098         50 LNENSKVLDIGSGLGGGCKYINE   72 (263)
T ss_pred             CCCCCEEEEEcCCCChhhHHHHh
Confidence            34678999999999998877765

>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA

Probab=90.87  E-value=0.19  Score=43.99  Aligned_cols=26  Identities=12%  Similarity=-0.055  Sum_probs=21.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .+.+|||||||+|..++.+|..+.+.
T Consensus       292 ~~~~vLDl~cG~G~~sl~la~~~~~V  317 (431)
T TIGR00479       292 GEELVVDAYCGVGTFTLPLAKQAKSV  317 (431)
T ss_pred             CCCEEEEcCCCcCHHHHHHHHhCCEE
Confidence            45799999999999999999866543

This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.

>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]

Probab=90.82  E-value=0.25  Score=39.65  Aligned_cols=29  Identities=17%  Similarity=0.194  Sum_probs=24.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      .-+|.+++|.|||||-++|-++.++|...
T Consensus        32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~   60 (187)
T COG2242          32 PRPGDRLWDIGAGTGSITIEWALAGPSGR   60 (187)
T ss_pred             CCCCCEEEEeCCCccHHHHHHHHhCCCce
Confidence            35678999999999999999998888743

>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional

Probab=90.81  E-value=0.37  Score=39.50  Aligned_cols=24  Identities=17%  Similarity=0.383  Sum_probs=18.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+|||+|||+|.....++...+
T Consensus        85 ~~~~vLDiGcG~G~~~~~l~~~~~  108 (272)
T PRK11088         85 KATALLDIGCGEGYYTHALADALP  108 (272)
T ss_pred             CCCeEEEECCcCCHHHHHHHHhcc
Confidence            447899999999998877765543

>TIGR03438 probable methyltransferase

Probab=90.75  E-value=0.19  Score=42.07  Aligned_cols=23  Identities=30%  Similarity=0.374  Sum_probs=18.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++.+|||||||+|.....++...
T Consensus        63 ~~~~iLELGcGtG~~t~~Ll~~l   85 (301)
T TIGR03438        63 AGCELVELGSGSSRKTRLLLDAL   85 (301)
T ss_pred             CCCeEEecCCCcchhHHHHHHhh
Confidence            56899999999999877666544

This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases

>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed

Probab=90.63  E-value=0.2  Score=45.36  Aligned_cols=24  Identities=29%  Similarity=0.384  Sum_probs=19.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|..++.++...+
T Consensus       138 ~~~~VLDlG~GsG~iai~la~~~p  161 (506)
T PRK01544        138 KFLNILELGTGSGCIAISLLCELP  161 (506)
T ss_pred             CCCEEEEccCchhHHHHHHHHHCC
Confidence            356899999999999998876543

>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional

Probab=90.62  E-value=0.19  Score=42.48  Aligned_cols=22  Identities=23%  Similarity=0.542  Sum_probs=19.9

Q ss_pred             CeEEEeCCCCChhHHHHhhcCC
Q 031904          124 KKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       124 k~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++|||+|||+|..++.++...+
T Consensus       135 ~~VLDlG~GsG~iai~la~~~p  156 (307)
T PRK11805        135 TRILDLCTGSGCIAIACAYAFP  156 (307)
T ss_pred             CEEEEEechhhHHHHHHHHHCC
Confidence            6899999999999999988765

>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU

Probab=90.54  E-value=0.23  Score=41.23  Aligned_cols=25  Identities=24%  Similarity=0.445  Sum_probs=21.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||+|||+|..++.+++..|.
T Consensus       149 ~~~~vlDiG~G~G~~~~~~~~~~p~  173 (306)
T TIGR02716       149 GVKKMIDVGGGIGDISAAMLKHFPE  173 (306)
T ss_pred             CCCEEEEeCCchhHHHHHHHHHCCC
Confidence            4579999999999999999887764

Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.

>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]

Probab=90.45  E-value=0.3  Score=39.17  Aligned_cols=42  Identities=21%  Similarity=0.430  Sum_probs=29.5

Q ss_pred             CccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHH
Q 031904           93 GVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPF  139 (150)
Q Consensus        93 g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~  139 (150)
                      .+.|+.+ ++|-.+|+-+.+..    ..-+|+-|||||.|||+.-=+
T Consensus        24 rtVGaI~-PsSs~lA~~M~s~I----~pesglpVlElGPGTGV~Tka   65 (194)
T COG3963          24 RTVGAIL-PSSSILARKMASVI----DPESGLPVLELGPGTGVITKA   65 (194)
T ss_pred             ceeeeec-CCcHHHHHHHHhcc----CcccCCeeEEEcCCccHhHHH
Confidence            4456655 66667777777642    345789999999999987533

>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []

Probab=90.35  E-value=0.27  Score=40.08  Aligned_cols=24  Identities=17%  Similarity=0.242  Sum_probs=17.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+|.+||+||||||.+.+.++...
T Consensus        46 ~~g~~vLDv~~GtG~~~~~l~~~~   69 (233)
T PF01209_consen   46 RPGDRVLDVACGTGDVTRELARRV   69 (233)
T ss_dssp             -S--EEEEET-TTSHHHHHHGGGS
T ss_pred             CCCCEEEEeCCChHHHHHHHHHHC
Confidence            457799999999999999887653

Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.

>TIGR01177 conserved hypothetical protein TIGR01177

Probab=90.05  E-value=0.41  Score=40.52  Aligned_cols=40  Identities=10%  Similarity=-0.039  Sum_probs=27.6

Q ss_pred             HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..|+..+...    ...-+|++|||.|||+|...+.++..+...
T Consensus       168 ~~la~~~~~l----~~~~~g~~vLDp~cGtG~~lieaa~~~~~v  207 (329)
T TIGR01177       168 PKLARAMVNL----ARVTEGDRVLDPFCGTGGFLIEAGLMGAKV  207 (329)
T ss_pred             HHHHHHHHHH----hCCCCcCEEEECCCCCCHHHHHHHHhCCeE
Confidence            3455555542    123457899999999999988887766543

This family is found exclusively in the Archaea.

>PLN02490 MPBQ/MSBQ methyltransferase

Probab=89.73  E-value=0.31  Score=42.17  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=19.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+.+|||||||+|...+.++...
T Consensus       113 ~~~~VLDLGcGtG~~~l~La~~~  135 (340)
T PLN02490        113 RNLKVVDVGGGTGFTTLGIVKHV  135 (340)
T ss_pred             CCCEEEEEecCCcHHHHHHHHHC
Confidence            46799999999999888776643

>PLN02476 O-methyltransferase

Probab=89.47  E-value=0.35  Score=40.87  Aligned_cols=25  Identities=20%  Similarity=0.250  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.|+|||+|+++|..+|.+|...+
T Consensus       117 ~~ak~VLEIGT~tGySal~lA~al~  141 (278)
T PLN02476        117 LGAERCIEVGVYTGYSSLAVALVLP  141 (278)
T ss_pred             cCCCeEEEecCCCCHHHHHHHHhCC
Confidence            4679999999999999999987543

>PLN02336 phosphoethanolamine N-methyltransferase

Probab=89.38  E-value=0.63  Score=40.98  Aligned_cols=22  Identities=23%  Similarity=0.459  Sum_probs=18.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++.+|||+|||+|..++.++..
T Consensus       266 ~~~~vLDiGcG~G~~~~~la~~  287 (475)
T PLN02336        266 PGQKVLDVGCGIGGGDFYMAEN  287 (475)
T ss_pred             CCCEEEEEeccCCHHHHHHHHh
Confidence            5789999999999988877764

>PF13679 Methyltransf_32: Methyltransferase domain

Probab=89.27  E-value=0.58  Score=34.77  Aligned_cols=23  Identities=26%  Similarity=0.287  Sum_probs=20.4

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhh
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      ..+..+|+|+|||-|.+|.+++.
T Consensus        23 ~~~~~~vvD~GsG~GyLs~~La~   45 (141)
T PF13679_consen   23 SKRCITVVDLGSGKGYLSRALAH   45 (141)
T ss_pred             cCCCCEEEEeCCChhHHHHHHHH
Confidence            35567999999999999999998

>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional

Probab=89.26  E-value=0.35  Score=42.73  Aligned_cols=25  Identities=24%  Similarity=0.406  Sum_probs=21.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+..+||+|||+|-..+.+|...|.
T Consensus       122 ~~p~vLEIGcGsG~~ll~lA~~~P~  146 (390)
T PRK14121        122 QEKILIEIGFGSGRHLLYQAKNNPN  146 (390)
T ss_pred             CCCeEEEEcCcccHHHHHHHHhCCC
Confidence            3579999999999999999987664

>PRK10901 16S rRNA methyltransferase B; Provisional

Probab=88.81  E-value=0.55  Score=41.29  Aligned_cols=25  Identities=12%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+|.+|||||||+|..++.++..++
T Consensus       243 ~~g~~VLDlgaG~G~~t~~la~~~~  267 (427)
T PRK10901        243 QNGERVLDACAAPGGKTAHILELAP  267 (427)
T ss_pred             CCCCEEEEeCCCCChHHHHHHHHcC
Confidence            3678999999999999999888765

>PRK04457 spermidine synthase; Provisional

Probab=88.45  E-value=0.42  Score=39.48  Aligned_cols=25  Identities=24%  Similarity=0.442  Sum_probs=20.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++||+||||+|.....++...|.
T Consensus        66 ~~~~vL~IG~G~G~l~~~l~~~~p~   90 (262)
T PRK04457         66 RPQHILQIGLGGGSLAKFIYTYLPD   90 (262)
T ss_pred             CCCEEEEECCCHhHHHHHHHHhCCC
Confidence            4689999999999999888776553

>COG4076 Predicted RNA methylase [General function prediction only]

Probab=88.06  E-value=0.31  Score=40.03  Aligned_cols=28  Identities=18%  Similarity=0.357  Sum_probs=23.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ....+-+||+|+|+++++||+...++.|
T Consensus        32 a~d~~~DLGaGsGiLs~~Aa~~A~rViA   59 (252)
T COG4076          32 AEDTFADLGAGSGILSVVAAHAAERVIA   59 (252)
T ss_pred             hhhceeeccCCcchHHHHHHhhhceEEE
Confidence            3467889999999999999998777665

>PRK06922 hypothetical protein; Provisional

Probab=88.06  E-value=0.48  Score=44.69  Aligned_cols=25  Identities=24%  Similarity=0.425  Sum_probs=20.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +++.+|||+|||+|.....++...|
T Consensus       417 ~~g~rVLDIGCGTG~ls~~LA~~~P  441 (677)
T PRK06922        417 IKGDTIVDVGAGGGVMLDMIEEETE  441 (677)
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHhCC
Confidence            4678999999999998877776544

>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]

Probab=87.84  E-value=0.5  Score=39.10  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +|.+|||+|||||-..+.++...+
T Consensus        51 ~g~~vLDva~GTGd~a~~~~k~~g   74 (238)
T COG2226          51 PGDKVLDVACGTGDMALLLAKSVG   74 (238)
T ss_pred             CCCEEEEecCCccHHHHHHHHhcC
Confidence            789999999999999999988664

>PRK11727 23S rRNA mA1618 methyltransferase; Provisional

Probab=87.33  E-value=0.69  Score=39.79  Aligned_cols=20  Identities=15%  Similarity=0.414  Sum_probs=14.8

Q ss_pred             CCCeEEEeCCCCChhHHHHh
Q 031904          122 HGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa  141 (150)
                      .+.+|||||||+|.+..+++
T Consensus       114 ~~~~vLDIGtGag~I~~lLa  133 (321)
T PRK11727        114 ANVRVLDIGVGANCIYPLIG  133 (321)
T ss_pred             CCceEEEecCCccHHHHHHH
Confidence            45799999999975554443

>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]

Probab=86.65  E-value=0.94  Score=36.82  Aligned_cols=40  Identities=25%  Similarity=0.307  Sum_probs=26.0

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++.|-+-|++.... -.....+-|+|+|||+|+++-++++.
T Consensus        25 TFlLlDaLekd~~e-L~~~~~~i~lEIG~GSGvvstfL~~~   64 (209)
T KOG3191|consen   25 TFLLLDALEKDAAE-LKGHNPEICLEIGCGSGVVSTFLASV   64 (209)
T ss_pred             hhHHHHHHHHHHHH-HhhcCceeEEEecCCcchHHHHHHHh
Confidence            45666666664210 01112567999999999998877764

>PTZ00146 fibrillarin; Provisional

Probab=86.19  E-value=0.63  Score=39.70  Aligned_cols=47  Identities=15%  Similarity=0.277  Sum_probs=30.3

Q ss_pred             ceeeech--HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904           96 GSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus        96 G~~vW~a--si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -+.+|+-  |-+-|-.|.- .. .-..-++.+|||||||+|...+.+|...
T Consensus       106 eyR~w~p~rSKlaa~i~~g-~~-~l~IkpG~~VLDLGaG~G~~t~~lAdiV  154 (293)
T PTZ00146        106 EYRVWNPFRSKLAAAIIGG-VA-NIPIKPGSKVLYLGAASGTTVSHVSDLV  154 (293)
T ss_pred             eeeeeCCcccHHHHHHHCC-cc-eeccCCCCEEEEeCCcCCHHHHHHHHHh
Confidence            4899986  3233333332 10 1123567899999999999888888764

>PRK14904 16S rRNA methyltransferase B; Provisional

Probab=86.06  E-value=1.4  Score=38.99  Aligned_cols=41  Identities=15%  Similarity=0.131  Sum_probs=28.4

Q ss_pred             eeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904           97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus        97 ~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..+++.+-.++..+..       ..+|++|||+|||+|-.++.++.+.
T Consensus       232 ~~vqd~~s~l~~~~l~-------~~~g~~VLDlgaG~G~kt~~la~~~  272 (445)
T PRK14904        232 VSVQNPTQALACLLLN-------PQPGSTVLDLCAAPGGKSTFMAELM  272 (445)
T ss_pred             EEEeCHHHHHHHHhcC-------CCCCCEEEEECCCCCHHHHHHHHHh
Confidence            4777655444444443       2467899999999998887777643

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=84.89  E-value=0.94  Score=36.77  Aligned_cols=22  Identities=23%  Similarity=0.480  Sum_probs=19.0

Q ss_pred             eEEEeCCCCChhHHHHhhcCCc
Q 031904          125 KIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       125 ~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +|||+|||||--.+..|...|.
T Consensus        28 ~vLEiaSGtGqHa~~FA~~lP~   49 (204)
T PF06080_consen   28 RVLEIASGTGQHAVYFAQALPH   49 (204)
T ss_pred             eEEEEcCCccHHHHHHHHHCCC
Confidence            7999999999988888877664

The function of this family is unknown.

>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB

Probab=84.26  E-value=1.4  Score=38.77  Aligned_cols=24  Identities=13%  Similarity=0.036  Sum_probs=20.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +|.+|||+|||+|-.++.++.+.+
T Consensus       238 ~g~~VLDlcag~G~kt~~la~~~~  261 (426)
T TIGR00563       238 NEETILDACAAPGGKTTHILELAP  261 (426)
T ss_pred             CCCeEEEeCCCccHHHHHHHHHcC
Confidence            578999999999999988887654

The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.

>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2

Probab=83.91  E-value=2.7  Score=36.20  Aligned_cols=63  Identities=19%  Similarity=0.025  Sum_probs=37.0

Q ss_pred             ecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904           75 ACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus        75 ~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      +.+..+.++.++.+..      .+=+.....|-++....     ...++.+||||=||+|..|+.+|..+.++.
T Consensus       160 ~~~~~~~~~~~~~sFf------QvN~~~~~~l~~~~~~~-----l~~~~~~vlDlycG~G~fsl~la~~~~~V~  222 (352)
T PF05958_consen  160 IQDKGLSFRISPGSFF------QVNPEQNEKLYEQALEW-----LDLSKGDVLDLYCGVGTFSLPLAKKAKKVI  222 (352)
T ss_dssp             ECCCTEEEEEETTS---------SBHHHHHHHHHHHHHH-----CTT-TTEEEEES-TTTCCHHHHHCCSSEEE
T ss_pred             eeccceEEEECCCcCc------cCcHHHHHHHHHHHHHH-----hhcCCCcEEEEeecCCHHHHHHHhhCCeEE
Confidence            3444566666554322      23334455555555543     122233799999999999999999877654

1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.

>PHA01634 hypothetical protein

Probab=83.82  E-value=1  Score=34.76  Aligned_cols=30  Identities=20%  Similarity=0.186  Sum_probs=26.9

Q ss_pred             ccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          118 MLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       118 ~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ...+++|+|+++|+++|=.+|--+..|++.
T Consensus        24 ~idvk~KtV~dIGA~iGdSaiYF~l~GAK~   53 (156)
T PHA01634         24 MLNVYQRTIQIVGADCGSSALYFLLRGASF   53 (156)
T ss_pred             heeecCCEEEEecCCccchhhHHhhcCccE
Confidence            467999999999999999999999888774

>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes

Probab=83.20  E-value=2  Score=36.29  Aligned_cols=30  Identities=23%  Similarity=0.288  Sum_probs=25.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ..+.+++|+||||.|=+-..++.+...++|
T Consensus        92 ~~~~~~lLDlGAGdG~VT~~l~~~f~~v~a  121 (265)
T PF05219_consen   92 DWKDKSLLDLGAGDGEVTERLAPLFKEVYA  121 (265)
T ss_pred             cccCCceEEecCCCcHHHHHHHhhcceEEe
Confidence            346679999999999998888888877765

The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.

>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e

Probab=83.08  E-value=0.96  Score=37.07  Aligned_cols=40  Identities=18%  Similarity=0.154  Sum_probs=27.9

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..-+++-+.+..    ..-++..|||+|+|+|...-.++..+.+
T Consensus        15 ~~~~~~~Iv~~~----~~~~~~~VlEiGpG~G~lT~~L~~~~~~   54 (262)
T PF00398_consen   15 DPNIADKIVDAL----DLSEGDTVLEIGPGPGALTRELLKRGKR   54 (262)
T ss_dssp             HHHHHHHHHHHH----TCGTTSEEEEESSTTSCCHHHHHHHSSE
T ss_pred             CHHHHHHHHHhc----CCCCCCEEEEeCCCCccchhhHhcccCc
Confidence            334555555542    1237899999999999999888776643

g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....

>KOG2904 consensus Predicted methyltransferase [General function prediction only]

Probab=83.03  E-value=1.7  Score=37.41  Aligned_cols=47  Identities=15%  Similarity=0.124  Sum_probs=31.3

Q ss_pred             eeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           98 VMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        98 ~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .-|+.- .+.+++..... +...+++..+||||||+|..++.+++-.|.
T Consensus       126 PRpETE-E~V~~Vid~~~-~~~~~~~~~ildlgtGSGaIslsll~~L~~  172 (328)
T KOG2904|consen  126 PRPETE-EWVEAVIDALN-NSEHSKHTHILDLGTGSGAISLSLLHGLPQ  172 (328)
T ss_pred             cCccHH-HHHHHHHHHHh-hhhhcccceEEEecCCccHHHHHHHhcCCC
Confidence            345443 44455554331 235577779999999999999988876553

>PRK14902 16S rRNA methyltransferase B; Provisional

Probab=82.37  E-value=1.6  Score=38.42  Aligned_cols=24  Identities=8%  Similarity=0.004  Sum_probs=20.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++.+|||+|||+|-.++.++...
T Consensus       249 ~~g~~VLDlgaG~G~~t~~la~~~  272 (444)
T PRK14902        249 KGGDTVLDACAAPGGKTTHIAELL  272 (444)
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh
Confidence            356899999999999998888753

>PLN02589 caffeoyl-CoA O-methyltransferase

Probab=81.16  E-value=1.3  Score=36.61  Aligned_cols=26  Identities=23%  Similarity=0.304  Sum_probs=21.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+-++|||+|.++|..++.+|...+
T Consensus        77 ~~~ak~iLEiGT~~GySal~la~al~  102 (247)
T PLN02589         77 LINAKNTMEIGVYTGYSLLATALALP  102 (247)
T ss_pred             HhCCCEEEEEeChhhHHHHHHHhhCC
Confidence            35668999999999999998886543

>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=80.90  E-value=2.3  Score=35.39  Aligned_cols=27  Identities=19%  Similarity=0.277  Sum_probs=20.3

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..|+.++||++|||+|....++..+.+
T Consensus        30 p~f~P~~vLD~GsGpGta~wAa~~~~~   56 (274)
T PF09243_consen   30 PDFRPRSVLDFGSGPGTALWAAREVWP   56 (274)
T ss_pred             cCCCCceEEEecCChHHHHHHHHHHhc
Confidence            358889999999999976665554433

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation

>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]

Probab=80.80  E-value=0.98  Score=37.85  Aligned_cols=23  Identities=30%  Similarity=0.488  Sum_probs=18.3

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      +..-||++|||+||.|=++..-|
T Consensus        50 ~~~~iLDIGCGsGLSg~vL~~~G   72 (270)
T KOG1541|consen   50 KSGLILDIGCGSGLSGSVLSDSG   72 (270)
T ss_pred             CCcEEEEeccCCCcchheeccCC
Confidence            55689999999999997665544

>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase

Probab=80.03  E-value=1.7  Score=35.68  Aligned_cols=23  Identities=4%  Similarity=0.030  Sum_probs=19.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .|.+|||+|||+|-.++.++.+.
T Consensus        71 ~g~~VLDl~ag~G~kt~~la~~~   93 (264)
T TIGR00446        71 PPERVLDMAAAPGGKTTQISALM   93 (264)
T ss_pred             CcCEEEEECCCchHHHHHHHHHc
Confidence            57899999999999998877754

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	150
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	2e-08

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} Length = 281

 Score = 51.0 bits (121), Expect = 2e-08
 Identities = 21/101 (20%), Positives = 34/101 (33%), Gaps = 7/101 (6%)

Query: 37  SESESAAEETMLLWGIQQPTLSKPNAFVAQSSLNLRIDACGHSLSILQSPSSLGTPGVTG 96
           S S +A +  +       P   +      +S +       G  L       +     +  
Sbjct: 1   SNSRAADQLELDGLPGTPPDFYRERQ---RSRVERYQSPAGAPLQCSVQVQTTQEHPLWT 57

Query: 97  SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVG 137
           S +W     L   L    +    L+ GK + ELG+G GLV 
Sbjct: 58  SHVWSGARALADTLCWQPE----LIAGKTVCELGAGAGLVS 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	150
3bzb_A	281	Uncharacterized protein; RED ALGA, protein structu	98.4
4hc4_A	376	Protein arginine N-methyltransferase 6; HRMT1L6, S	97.64
3lpm_A	259	Putative methyltransferase; structural genomics, p	97.17
3mti_A	185	RRNA methylase; SAM-dependent, PSI, MCSG, structur	96.9
3opn_A	232	Putative hemolysin; structural genomics, PSI-2, pr	96.81
2nxc_A	254	L11 mtase, ribosomal protein L11 methyltransferase	96.81
3dmg_A	381	Probable ribosomal RNA small subunit methyltransf;	96.79
3q87_B	170	N6 adenine specific DNA methylase; SAM-methyltrans	96.72
3p9n_A	189	Possible methyltransferase (methylase); RV2966C, a	96.62
1ws6_A	171	Methyltransferase; structural genomics, riken stru	96.56
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	96.53
2plw_A	201	Ribosomal RNA methyltransferase, putative; malaria	96.52
2fhp_A	187	Methylase, putative; alpha-beta-alpha sandwich, st	96.5
2esr_A	177	Methyltransferase; structural genomics, hypothetic	96.5
3r0q_C	376	Probable protein arginine N-methyltransferase 4.2;	96.49
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	96.47
4dzr_A	215	Protein-(glutamine-N5) methyltransferase, release	96.43
3grz_A	205	L11 mtase, ribosomal protein L11 methyltransferase	96.39
4dcm_A	375	Ribosomal RNA large subunit methyltransferase G; 2	96.37
1wy7_A	207	Hypothetical protein PH1948; seven-stranded beta s	96.33
2fyt_A	340	Protein arginine N-methyltransferase 3; structural	96.25
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	96.24
3orh_A	236	Guanidinoacetate N-methyltransferase; structura ge	96.22
1pjz_A	203	Thiopurine S-methyltransferase; polymorphism, S-ad	96.19
3g89_A	249	Ribosomal RNA small subunit methyltransferase G; 1	96.19
3hp7_A	291	Hemolysin, putative; structural genomics, APC64019	96.14
1dus_A	194	MJ0882; hypothetical protein, methanococcus jannas	96.12
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	96.09
4hg2_A	257	Methyltransferase type 11; structural genomics, PS	96.07
2ozv_A	260	Hypothetical protein ATU0636; structural genomics,	96.07
1xdz_A	240	Methyltransferase GIDB; MCSG, protein structure in	96.07
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	96.06
3gdh_A	241	Trimethylguanosine synthase homolog; M7G, CAP, dim	96.05
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	96.03
2p7i_A	250	Hypothetical protein; putative methyltransferase,	96.02
2yxd_A	183	Probable cobalt-precorrin-6Y C(15)-methyltransfer	96.0
2y1w_A	348	Histone-arginine methyltransferase CARM1; histone	95.99
2ift_A	201	Putative methylase HI0767; NESG, Y767_haein, struc	95.99
3ggd_A	245	SAM-dependent methyltransferase; YP_325210.1, stru	95.94
2fpo_A	202	Methylase YHHF; structural genomics, putative meth	95.93
3q7e_A	349	Protein arginine N-methyltransferase 1; HET: SAH;	95.92
1g6q_1	328	HnRNP arginine N-methyltransferase; SAM-binding do	95.92
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	95.92
1l3i_A	192	Precorrin-6Y methyltransferase/putative decarboxyl	95.91
1ne2_A	200	Hypothetical protein TA1320; structural genomics,	95.89
3iv6_A	261	Putative Zn-dependent alcohol dehydrogenase; alpha	95.89
1nt2_A	210	Fibrillarin-like PRE-rRNA processing protein; adeM	95.89
3ujc_A	266	Phosphoethanolamine N-methyltransferase; parasite;	95.84
3g5l_A	253	Putative S-adenosylmethionine dependent methyltran	95.81
3evz_A	230	Methyltransferase; NYSGXRC, NEW YORK SGX research	95.81
3mq2_A	218	16S rRNA methyltransferase; methyltranferase, ribo	95.79
1zx0_A	236	Guanidinoacetate N-methyltransferase; structural g	95.79
3m33_A	226	Uncharacterized protein; structural genomics, PSI-	95.77
3fzg_A	200	16S rRNA methylase; methyltransferase, plasmid, tr	95.76
3ofk_A	216	Nodulation protein S; NODS, N-methyltransferase, S	95.73
2pxx_A	215	Uncharacterized protein MGC2408; structural genomi	95.73
3thr_A	293	Glycine N-methyltransferase; GNMT, folate, methylt	95.72
3jwg_A	219	HEN1, methyltransferase type 12; 1.90A {Clostridiu	95.71
2gb4_A	252	Thiopurine S-methyltransferase; 18204406, thiopuri	95.7
4gek_A	261	TRNA (CMO5U34)-methyltransferase; structural genom	95.67
1yzh_A	214	TRNA (guanine-N(7)-)-methyltransferase; alpha-beta	95.66
1jsx_A	207	Glucose-inhibited division protein B; methyltransf	95.65
1vbf_A	231	231AA long hypothetical protein-L-isoaspartate O-	95.63
3g07_A	292	7SK snRNA methylphosphate capping enzyme; structur	95.63
3sm3_A	235	SAM-dependent methyltransferases; NESG, structural	95.6
3f4k_A	257	Putative methyltransferase; structural genomics, P	95.57
3pfg_A	263	N-methyltransferase; N,N-dimethyltransferase, SAM	95.54
3tqs_A	255	Ribosomal RNA small subunit methyltransferase A; p	95.54
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	95.53
2a14_A	263	Indolethylamine N-methyltransferase; SGC,INMT, str	95.52
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	95.52
3l8d_A	242	Methyltransferase; structural genomics, PSI, nysgr	95.52
2fca_A	213	TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac	95.52
3e8s_A	227	Putative SAM dependent methyltransferase; NP_74470	95.51
1ve3_A	227	Hypothetical protein PH0226; dimer, riken structur	95.51
3dli_A	240	Methyltransferase; PSI-II, NYSGXRC, structural gen	95.5
3ege_A	261	Putative methyltransferase from antibiotic biosyn	95.5
2oxt_A	265	Nucleoside-2'-O-methyltransferase; flavivirus, vir	95.49
3u81_A	221	Catechol O-methyltransferase; neurotransmitter deg	95.49
3m70_A	286	Tellurite resistance protein TEHB homolog; structu	95.48
4htf_A	285	S-adenosylmethionine-dependent methyltransferase;	95.47
3ntv_A	232	MW1564 protein; rossmann fold, putative methyltran	95.46
2vdv_E	246	TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl	95.46
2avd_A	229	Catechol-O-methyltransferase; structural genomics,	95.45
2wa2_A	276	Non-structural protein 5; transferase, S-adenosyl-	95.44
3dxy_A	218	TRNA (guanine-N(7)-)-methyltransferase; rossmann f	95.44
1nkv_A	256	Hypothetical protein YJHP; structural genomics, PS	95.43
3jwh_A	217	HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena	95.43
3e23_A	211	Uncharacterized protein RPA2492; alpha-beta protei	95.43
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	95.42
3r3h_A	242	O-methyltransferase, SAM-dependent; structural gen	95.42
1wzn_A	252	SAM-dependent methyltransferase; structural genomi	95.42
3bt7_A	369	TRNA (uracil-5-)-methyltransferase; methyluridine,	95.41
4azs_A	569	Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15	95.41
3tr6_A	225	O-methyltransferase; cellular processes; HET: SAH;	95.4
3lcc_A	235	Putative methyl chloride transferase; halide methy	95.4
2xvm_A	199	Tellurite resistance protein TEHB; antibiotic resi	95.36
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	95.35
3ou2_A	218	SAM-dependent methyltransferase; O-methyltransfera	95.34
3mgg_A	276	Methyltransferase; NYSGXRC, PSI-II, protein struct	95.33
1qam_A	244	ERMC' methyltransferase; rRNA methyltransferase ER	95.3
2i62_A	265	Nicotinamide N-methyltransferase; structural genom	95.29
3h2b_A	203	SAM-dependent methyltransferase; alpha-beta protei	95.29
3cgg_A	195	SAM-dependent methyltransferase; NP_600671.1, meth	95.29
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	95.28
3b3j_A	480	Histone-arginine methyltransferase CARM1; protein	95.25
3hnr_A	220	Probable methyltransferase BT9727_4108; structural	95.23
2frn_A	278	Hypothetical protein PH0793; structural genomics,	95.23
3bus_A	273	REBM, methyltransferase; rebeccamycin synthesis; H	95.19
3bkw_A	243	MLL3908 protein, S-adenosylmethionine dependent me	95.18
3kkz_A	267	Uncharacterized protein Q5LES9; putative methyltra	95.14
3fut_A	271	Dimethyladenosine transferase; methyltransferase,	95.11
2yqz_A	263	Hypothetical protein TTHA0223; RNA methyltransfera	95.11
1vl5_A	260	Unknown conserved protein BH2331; putative methylt	95.1
2bm8_A	236	Cephalosporin hydroxylase CMCI; cephamycin biosynt	95.07
3uzu_A	279	Ribosomal RNA small subunit methyltransferase A; s	95.07
1y8c_A	246	S-adenosylmethionine-dependent methyltransferase;	95.05
2k4m_A	153	TR8_protein, UPF0146 protein MTH_1000; alpha+beta,	95.04
3gu3_A	284	Methyltransferase; alpha-beta protein, structural	95.04
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	95.04
3bxo_A	239	N,N-dimethyltransferase; desosamine, sugar, carboh	95.01
3dtn_A	234	Putative methyltransferase MM_2633; structural gen	94.99
2g72_A	289	Phenylethanolamine N-methyltransferase; HET: SAM F	94.99
1sui_A	247	Caffeoyl-COA O-methyltransferase; rossmann fold, p	94.96
2avn_A	260	Ubiquinone/menaquinone biosynthesis methyltransfe	94.92
3hem_A	302	Cyclopropane-fatty-acyl-phospholipid synthase 2; p	94.92
1jg1_A	235	PIMT;, protein-L-isoaspartate O-methyltransferase;	94.91
2p41_A	305	Type II methyltransferase; vizier, viral enzymes i	94.91
2igt_A	332	SAM dependent methyltransferase; alpha-beta sandwi	94.9
3gru_A	295	Dimethyladenosine transferase; rossman fold, ribos	94.89
1kpg_A	287	CFA synthase;, cyclopropane-fatty-acyl-phospholipi	94.88
1zq9_A	285	Probable dimethyladenosine transferase; SGC, struc	94.85
3p2e_A	225	16S rRNA methylase; methyltransferase, transferase	94.85
3c3p_A	210	Methyltransferase; NP_951602.1, structural genomic	94.82
3g2m_A	299	PCZA361.24; SAM-dependent methyltransferase, glyco	94.82
3a27_A	272	TYW2, uncharacterized protein MJ1557; wybutosine m	94.81
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	94.76
3ckk_A	235	TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-	94.76
1yub_A	245	Ermam, rRNA methyltransferase; MLS antibiotics; NM	94.75
2r6z_A	258	UPF0341 protein in RSP 3' region; alpha-beta prote	94.75
3cbg_A	232	O-methyltransferase; cyanobacterium; HET: SAH FER	94.73
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	94.73
1dl5_A	317	Protein-L-isoaspartate O-methyltransferase; isoasp	94.68
2h00_A	254	Methyltransferase 10 domain containing protein; st	94.68
2ex4_A	241	Adrenal gland protein AD-003; methyltransferase, s	94.65
3d2l_A	243	SAM-dependent methyltransferase; ZP_00538691.1, st	94.63
1g8a_A	227	Fibrillarin-like PRE-rRNA processing protein; rRNA	94.58
2kw5_A	202	SLR1183 protein; structural genomics, northeast st	94.58
1ri5_A	298	MRNA capping enzyme; methyltransferase, M7G, messe	94.55
2p35_A	259	Trans-aconitate 2-methyltransferase; SAM dependent	94.54
2h1r_A	299	Dimethyladenosine transferase, putative; SGC toron	94.51
3dr5_A	221	Putative O-methyltransferase; Q8NRD3, CGL1119, PF0	94.48
1u2z_A	433	Histone-lysine N-methyltransferase, H3 lysine-79 s	94.48
3c3y_A	237	Pfomt, O-methyltransferase; plant secondary metabo	94.44
2ipx_A	233	RRNA 2'-O-methyltransferase fibrillarin; FBL, stru	94.41
2fk8_A	318	Methoxy mycolic acid synthase 4; S-adenosylmethion	94.41
3ftd_A	249	Dimethyladenosine transferase; KSGA, rossmann-like	94.37
3dlc_A	219	Putative S-adenosyl-L-methionine-dependent methylt	94.33
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	94.31
4dmg_A	393	Putative uncharacterized protein TTHA1493; rRNA, m	94.3
3bkx_A	275	SAM-dependent methyltransferase; YP_807781.1, cycl	94.28
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	94.27
1xtp_A	254	LMAJ004091AAA; SGPP, structural genomics, PSI, pro	94.26
1nv8_A	284	HEMK protein; class I adoMet-dependent methyltrans	94.24
2b3t_A	276	Protein methyltransferase HEMK; translation termin	94.23
3ll7_A	410	Putative methyltransferase; methytransferase, stru	94.19
3ccf_A	279	Cyclopropane-fatty-acyl-phospholipid synthase; YP_	94.18
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	94.16
3cc8_A	230	Putative methyltransferase; structural genomics, j	94.13
3vc1_A	312	Geranyl diphosphate 2-C-methyltransferase; rossman	94.1
3dh0_A	219	SAM dependent methyltransferase; cystal structure,	94.09
2b78_A	385	Hypothetical protein SMU.776; structure genomics,	94.09
3c0k_A	396	UPF0064 protein YCCW; PUA domain, adoMet dependent	93.95
2o57_A	297	Putative sarcosine dimethylglycine methyltransfera	93.94
3g5t_A	299	Trans-aconitate 3-methyltransferase; structural ge	93.94
3k6r_A	278	Putative transferase PH0793; structural genomics,	93.92
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	93.84
3tm4_A	373	TRNA (guanine N2-)-methyltransferase TRM14; rossma	93.78
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	93.77
1o9g_A	250	RRNA methyltransferase; antibiotic resistance, Se-	93.69
2b25_A	336	Hypothetical protein; structural genomics, methyl	93.67
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	93.44
1uwv_A	433	23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m	93.34
2p8j_A	209	S-adenosylmethionine-dependent methyltransferase;	93.3
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	93.29
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	93.27
4fsd_A	383	Arsenic methyltransferase; rossmann fold; 1.75A {C	93.23
1yb2_A	275	Hypothetical protein TA0852; structural genomics,	93.18
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	93.11
2pjd_A	343	Ribosomal RNA small subunit methyltransferase C; g	93.08
2jjq_A	425	Uncharacterized RNA methyltransferase pyrab10780;	92.96
3id6_C	232	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	92.94
2as0_A	396	Hypothetical protein PH1915; RNA methyltransferase	92.85
2ih2_A	421	Modification methylase TAQI; DNA, DNA methyltransf	92.8
4df3_A	233	Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase;	92.76
3v97_A	703	Ribosomal RNA large subunit methyltransferase L; Y	92.74
3bgv_A	313	MRNA CAP guanine-N7 methyltransferase; alternative	92.62
4e2x_A	416	TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s	92.61
1vlm_A	219	SAM-dependent methyltransferase; possible histamin	92.58
2zfu_A	215	Nucleomethylin, cerebral protein 1; nucleolar prot	92.46
1mjf_A	281	Spermidine synthase; spermidine synthetase, struct	92.44
2vdw_A	302	Vaccinia virus capping enzyme D1 subunit; nucleoti	92.42
2zig_A	297	TTHA0409, putative modification methylase; methylt	92.27
2gs9_A	211	Hypothetical protein TT1324; methyl transferase, s	92.13
1tw3_A	360	COMT, carminomycin 4-O-methyltransferase; anthracy	92.12
3frh_A	253	16S rRNA methylase; methyltransferase domain, heli	92.01
2o07_A	304	Spermidine synthase; structural genomics, structur	91.98
2dul_A	378	N(2),N(2)-dimethylguanosine tRNA methyltransferas;	91.85
1qzz_A	374	RDMB, aclacinomycin-10-hydroxylase; anthracycline,	91.79
3mcz_A	352	O-methyltransferase; adomet_mtases, S-adenosylmeth	91.63
1xj5_A	334	Spermidine synthase 1; structural genomics, protei	91.48
1iy9_A	275	Spermidine synthase; rossmann fold, structural gen	91.47
3bwc_A	304	Spermidine synthase; SAM, SGPP, structura genomics	91.44
3dp7_A	363	SAM-dependent methyltransferase; structural genomi	91.4
3ocj_A	305	Putative exported protein; structural genomics, PS	91.38
1wxx_A	382	TT1595, hypothetical protein TTHA1280; thermus the	91.36
2yx1_A	336	Hypothetical protein MJ0883; methyl transferase, t	91.34
2aot_A	292	HMT, histamine N-methyltransferase; classic methyl	91.15
3lst_A	348	CALO1 methyltransferase; calicheamicin, enediyne,	91.14
3uwp_A	438	Histone-lysine N-methyltransferase, H3 lysine-79;	91.13
1inl_A	296	Spermidine synthase; beta-barrel, rossman fold, st	91.13
3adn_A	294	Spermidine synthase; aminopropyltransferase, polya	91.13
2b2c_A	314	Spermidine synthase; beta-alpha, transferase; 2.50	91.05
3tma_A	354	Methyltransferase; thump domain; 2.05A {Thermus th	91.01
1uir_A	314	Polyamine aminopropyltransferase; spermidien synth	90.98
2pt6_A	321	Spermidine synthase; transferase, structural genom	90.91
1x19_A	359	CRTF-related protein; methyltransferase, bacterioc	90.87
2i7c_A	283	Spermidine synthase; transferase, structural genom	90.74
1fp2_A	352	Isoflavone O-methyltransferase; protein-product co	90.46
1fp1_D	372	Isoliquiritigenin 2'-O-methyltransferase; protein-	90.4
3reo_A	368	(ISO)eugenol O-methyltransferase; directed evoluti	90.13
2r3s_A	335	Uncharacterized protein; methyltransferase domain,	90.1
2oyr_A	258	UPF0341 protein YHIQ; alpha-beta protein, structur	90.06
3htx_A	950	HEN1; HEN1, small RNA methyltransferase, protein-R	89.85
1zg3_A	358	Isoflavanone 4'-O-methyltransferase; rossman fold,	89.59
3lcv_B	281	Sisomicin-gentamicin resistance methylase SGM; ant	89.57
3ajd_A	274	Putative methyltransferase MJ0026; tRNA, M5C, ross	89.57
3i53_A	332	O-methyltransferase; CO-complex, rossmann-like fol	89.49
3gwz_A	369	MMCR; methyltransferase, mitomycin, S-adenosyl met	89.27
2qm3_A	373	Predicted methyltransferase; putative methyltransf	89.08
1ixk_A	315	Methyltransferase; open beta sheet; 1.90A {Pyrococ	88.72
3p9c_A	364	Caffeic acid O-methyltransferase; S-adenosylmethio	88.52
2ip2_A	334	Probable phenazine-specific methyltransferase; pyo	88.36
2cmg_A	262	Spermidine synthase; transferase, putrescine amino	87.42
4gqb_A	637	Protein arginine N-methyltransferase 5; TIM barrel	87.37
3gjy_A	317	Spermidine synthase; APC62791, structural genomics	85.72
3m6w_A	464	RRNA methylase; rRNA methyltransferase, 5-methylcy	85.71
3axs_A	392	Probable N(2),N(2)-dimethylguanosine tRNA methylt	85.69
2qy6_A	257	UPF0209 protein YFCK; structural genomics, unknown	85.6
1m6y_A	301	S-adenosyl-methyltransferase MRAW; SAM-dependent m	85.09
1sqg_A	429	SUN protein, FMU protein; rossmann-fold, mixed bet	84.73
2qe6_A	274	Uncharacterized protein TFU_2867; putative methylt	84.38
3ua3_A	745	Protein arginine N-methyltransferase 5; TIM-barrel	82.87
4a6d_A	353	Hydroxyindole O-methyltransferase; melatonin, circ	82.51
3ldu_A	385	Putative methylase; structural genomics, PSI-2, pr	82.29
3m4x_A	456	NOL1/NOP2/SUN family protein; mtase domain, PUA do	82.09
1g60_A	260	Adenine-specific methyltransferase MBOIIA; structu	81.92
2f8l_A	344	Hypothetical protein LMO1582; structural genomics,	81.87
2frx_A	479	Hypothetical protein YEBU; rossmann-type S-adenosy	81.76
2qfm_A	364	Spermine synthase; spermidine aminopropyltransfera	81.45
2yxl_A	450	PH0851 protein, 450AA long hypothetical FMU protei	81.35

>3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae}

Probab=98.40  E-value=2e-07  Score=75.17  Aligned_cols=50  Identities=28%  Similarity=0.374  Sum_probs=36.5

Q ss_pred             CCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           92 PGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        92 ~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ...+|..+|+++..|++|+...    ....++++|||||||+|..++.++..+.
T Consensus        53 ~~~~g~~~~~~~~~l~~~l~~~----~~~~~~~~vLDlG~G~G~~~~~~a~~~~  102 (281)
T 3bzb_A           53 HPLWTSHVWSGARALADTLCWQ----PELIAGKTVCELGAGAGLVSIVAFLAGA  102 (281)
T ss_dssp             ---------CHHHHHHHHHHHC----GGGTTTCEEEETTCTTSHHHHHHHHTTC
T ss_pred             CCCCCceeecHHHHHHHHHHhc----chhcCCCeEEEecccccHHHHHHHHcCC
Confidence            4568999999999999999984    3456889999999999999999999876

>4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens}

Probab=97.64  E-value=2.3e-05  Score=66.89  Aligned_cols=29  Identities=24%  Similarity=0.513  Sum_probs=26.5

Q ss_pred             ccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          118 MLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       118 ~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ...++||+||++|||+|+++|.||+.|++
T Consensus        79 ~~~~~~k~VLDvG~GtGiLs~~Aa~aGA~  107 (376)
T 4hc4_A           79 WAALRGKTVLDVGAGTGILSIFCAQAGAR  107 (376)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTTCS
T ss_pred             HHhcCCCEEEEeCCCccHHHHHHHHhCCC
Confidence            35689999999999999999999999976

>3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes}

Probab=97.17  E-value=0.00045  Score=54.25  Aligned_cols=56  Identities=30%  Similarity=0.346  Sum_probs=40.7

Q ss_pred             ecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           75 ACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        75 ~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +....+.|.|...        |+...--+++|+.|+.       ..+++++|||+|||+|..++.++..++
T Consensus        17 ~~~~~~~i~q~~~--------~~~~~~d~~ll~~~~~-------~~~~~~~vLDlG~G~G~~~~~la~~~~   72 (259)
T 3lpm_A           17 LLAENLRIIQSPS--------VFSFSIDAVLLAKFSY-------LPIRKGKIIDLCSGNGIIPLLLSTRTK   72 (259)
T ss_dssp             ETTTTEEEEEBTT--------TBCCCHHHHHHHHHCC-------CCSSCCEEEETTCTTTHHHHHHHTTCC
T ss_pred             ccCCCEEEEeCCC--------CccCcHHHHHHHHHhc-------CCCCCCEEEEcCCchhHHHHHHHHhcC
Confidence            3456789999864        3343344677777642       113688999999999999999998776

>3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A*

Probab=96.90  E-value=0.00096  Score=49.00  Aligned_cols=40  Identities=13%  Similarity=0.016  Sum_probs=28.2

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ...++..+...     ..-++.+|||+|||+|..++.++..+...
T Consensus         8 ~~~~~~~~l~~-----~~~~~~~vLDiGcG~G~~~~~la~~~~~v   47 (185)
T 3mti_A            8 PIHMSHDFLAE-----VLDDESIVVDATMGNGNDTAFLAGLSKKV   47 (185)
T ss_dssp             HHHHHHHHHHT-----TCCTTCEEEESCCTTSHHHHHHHTTSSEE
T ss_pred             HHHHHHHHHHH-----hCCCCCEEEEEcCCCCHHHHHHHHhCCEE
Confidence            34455544442     33468899999999999999999874433

>3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp}

Probab=96.81  E-value=0.0015  Score=51.33  Aligned_cols=41  Identities=24%  Similarity=0.293  Sum_probs=31.7

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++..|.+.|...    ....++++|||||||||.....++..+.
T Consensus        20 rg~~kL~~~L~~~----~~~~~g~~VLDiGcGtG~~t~~la~~g~   60 (232)
T 3opn_A           20 RGGLKLEKALKEF----HLEINGKTCLDIGSSTGGFTDVMLQNGA   60 (232)
T ss_dssp             TTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             CcHHHHHHHHHHc----CCCCCCCEEEEEccCCCHHHHHHHhcCC
Confidence            4555666666653    3456789999999999999998888775

>2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A*

Probab=96.81  E-value=0.0011  Score=52.27  Aligned_cols=44  Identities=20%  Similarity=0.222  Sum_probs=32.8

Q ss_pred             eeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           97 SVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        97 ~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .-.++.+....++|...      ..++++|||+|||+|..++.+++.+++
T Consensus       101 tg~~~tt~~~~~~l~~~------~~~~~~VLDiGcG~G~l~~~la~~g~~  144 (254)
T 2nxc_A          101 TGHHETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGGK  144 (254)
T ss_dssp             -CCSHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTCE
T ss_pred             CCCCHHHHHHHHHHHHh------cCCCCEEEEecCCCcHHHHHHHHhCCe
Confidence            33455666666676652      346789999999999999999998874

>3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A*

Probab=96.79  E-value=0.0046  Score=52.23  Aligned_cols=71  Identities=14%  Similarity=0.192  Sum_probs=49.5

Q ss_pred             ceEEEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           69 LNLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        69 ~~l~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ...++.+.+..+.+...+....     +..+.+.+-.|.+++....  .....++++|||||||+|..++.++..+..
T Consensus       187 ~~~~~~~~g~~~~~~~~pgvFs-----~~~~d~~t~~ll~~l~~~l--~~~~~~~~~VLDlGcG~G~~~~~la~~g~~  257 (381)
T 3dmg_A          187 RAFSARILGAEYTFHHLPGVFS-----AGKVDPASLLLLEALQERL--GPEGVRGRQVLDLGAGYGALTLPLARMGAE  257 (381)
T ss_dssp             EEEEEEETTEEEEEEECTTCTT-----TTSCCHHHHHHHHHHHHHH--CTTTTTTCEEEEETCTTSTTHHHHHHTTCE
T ss_pred             ceeeEEecCceEEEEeCCCcee-----CCCCCHHHHHHHHHHHHhh--cccCCCCCEEEEEeeeCCHHHHHHHHcCCE
Confidence            3456777888899988875321     2234456667777776532  112457899999999999999999987654

>3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi}

Probab=96.72  E-value=0.0014  Score=48.35  Aligned_cols=37  Identities=22%  Similarity=0.171  Sum_probs=27.6

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+..|.++|..      ...++++|||+|||+|..++.++..+
T Consensus         9 ~~~~l~~~l~~------~~~~~~~vLD~GcG~G~~~~~l~~~~   45 (170)
T 3q87_B            9 DTYTLMDALER------EGLEMKIVLDLGTSTGVITEQLRKRN   45 (170)
T ss_dssp             HHHHHHHHHHH------HTCCSCEEEEETCTTCHHHHHHTTTS
T ss_pred             cHHHHHHHHHh------hcCCCCeEEEeccCccHHHHHHHhcC
Confidence            34455666443      13567899999999999999998876

>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}

Probab=96.62  E-value=0.0023  Score=47.35  Aligned_cols=45  Identities=20%  Similarity=0.132  Sum_probs=27.6

Q ss_pred             echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++.+-.+.+.+.+.... ....++++|||||||+|..++.++..+.
T Consensus        23 rp~~~~~~~~l~~~l~~-~~~~~~~~vLDlgcG~G~~~~~~~~~~~   67 (189)
T 3p9n_A           23 RPTTDRVRESLFNIVTA-RRDLTGLAVLDLYAGSGALGLEALSRGA   67 (189)
T ss_dssp             ---CHHHHHHHHHHHHH-HSCCTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred             ccCcHHHHHHHHHHHHh-ccCCCCCEEEEeCCCcCHHHHHHHHCCC
Confidence            44444455544443210 1226889999999999999997766554

>1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46

Probab=96.56  E-value=0.0015  Score=46.83  Aligned_cols=25  Identities=20%  Similarity=0.108  Sum_probs=22.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||+|||+|..++.++..++.
T Consensus        41 ~~~~vLD~GcG~G~~~~~l~~~~~~   65 (171)
T 1ws6_A           41 RRGRFLDPFAGSGAVGLEAASEGWE   65 (171)
T ss_dssp             TCCEEEEETCSSCHHHHHHHHTTCE
T ss_pred             CCCeEEEeCCCcCHHHHHHHHCCCe
Confidence            7889999999999999999987765

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=96.53  E-value=0.0028  Score=48.10  Aligned_cols=40  Identities=20%  Similarity=0.184  Sum_probs=28.9

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++.-|.+.+.+.    ...-++.+|||||||+|.....++..+.
T Consensus         9 a~~KL~ei~~~~----~~~~~g~~VLDlG~G~G~~s~~la~~~~   48 (191)
T 3dou_A            9 AAFKLEFLLDRY----RVVRKGDAVIEIGSSPGGWTQVLNSLAR   48 (191)
T ss_dssp             HHHHHHHHHHHH----CCSCTTCEEEEESCTTCHHHHHHTTTCS
T ss_pred             HHHHHHHHHHHc----CCCCCCCEEEEEeecCCHHHHHHHHcCC
Confidence            455565555543    2344689999999999999999987643

>2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum}

Probab=96.52  E-value=0.003  Score=46.77  Aligned_cols=40  Identities=15%  Similarity=0.067  Sum_probs=28.5

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++..|.+.+...    ...-++.+|||||||+|..++.++...+
T Consensus         6 ~~~kl~~~~~~~----~~~~~~~~vLDlGcG~G~~~~~l~~~~~   45 (201)
T 2plw_A            6 AAYKLIELDNKY----LFLKKNKIILDIGCYPGSWCQVILERTK   45 (201)
T ss_dssp             THHHHHHHHHHH----CCCCTTEEEEEESCTTCHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHc----CCCCCCCEEEEeCCCCCHHHHHHHHHcC
Confidence            455566655442    2334678999999999999999987654

>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46

Probab=96.50  E-value=0.0028  Score=46.06  Aligned_cols=41  Identities=15%  Similarity=0.041  Sum_probs=28.3

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ....+.+++.+..   ....++++|||+|||+|..++.++..+.
T Consensus        27 ~~~~~~~~~~~~l---~~~~~~~~vLD~GcG~G~~~~~~~~~~~   67 (187)
T 2fhp_A           27 TTDKVKESIFNMI---GPYFDGGMALDLYSGSGGLAIEAVSRGM   67 (187)
T ss_dssp             CCHHHHHHHHHHH---CSCCSSCEEEETTCTTCHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHH---HhhcCCCCEEEeCCccCHHHHHHHHcCC
Confidence            3444555555532   1235789999999999999998777543

>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46

Probab=96.50  E-value=0.0026  Score=46.34  Aligned_cols=42  Identities=12%  Similarity=0.085  Sum_probs=26.6

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +..-.+.+++....   ....++++|||+|||+|..++.++..+.
T Consensus        13 p~~~~~~~~~~~~l---~~~~~~~~vLDlGcG~G~~~~~l~~~~~   54 (177)
T 2esr_A           13 PTSDKVRGAIFNMI---GPYFNGGRVLDLFAGSGGLAIEAVSRGM   54 (177)
T ss_dssp             -----CHHHHHHHH---CSCCCSCEEEEETCTTCHHHHHHHHTTC
T ss_pred             cCHHHHHHHHHHHH---HhhcCCCeEEEeCCCCCHHHHHHHHcCC
Confidence            33344445555432   1145788999999999999998887743

>3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana}

Probab=96.49  E-value=0.0025  Score=53.31  Aligned_cols=27  Identities=19%  Similarity=0.543  Sum_probs=24.4

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+++++|||||||+|..++.++..+.
T Consensus        60 ~~~~~~~VLDlGcGtG~ls~~la~~g~   86 (376)
T 3r0q_C           60 HHFEGKTVLDVGTGSGILAIWSAQAGA   86 (376)
T ss_dssp             TTTTTCEEEEESCTTTHHHHHHHHTTC
T ss_pred             ccCCCCEEEEeccCcCHHHHHHHhcCC
Confidence            457889999999999999999999876

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=96.47  E-value=0.0042  Score=45.70  Aligned_cols=38  Identities=16%  Similarity=0.211  Sum_probs=27.1

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      +..|.+.....    ...-++.+|||||||+|..++.++...
T Consensus         7 ~~kl~~l~~~~----~~~~~~~~vLDlGcG~G~~~~~la~~~   44 (196)
T 2nyu_A            7 AFKLLEVNERH----QILRPGLRVLDCGAAPGAWSQVAVQKV   44 (196)
T ss_dssp             HHHHHHHHHHH----CCCCTTCEEEEETCCSCHHHHHHHHHT
T ss_pred             HHHHHHHHHhc----CCCCCCCEEEEeCCCCCHHHHHHHHHh
Confidence            44444444432    234467899999999999999998874

>4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp}

Probab=96.43  E-value=0.0033  Score=46.39  Aligned_cols=40  Identities=18%  Similarity=0.272  Sum_probs=29.1

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +..+.+++....   ....++++|||+|||+|..++.++..++
T Consensus        14 ~~~~~~~~~~~l---~~~~~~~~vLDiG~G~G~~~~~l~~~~~   53 (215)
T 4dzr_A           14 TEVLVEEAIRFL---KRMPSGTRVIDVGTGSGCIAVSIALACP   53 (215)
T ss_dssp             HHHHHHHHHHHH---TTCCTTEEEEEEESSBCHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHh---hhcCCCCEEEEecCCHhHHHHHHHHhCC
Confidence            345556665532   1125678999999999999999998865

>3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp}

Probab=96.39  E-value=0.0037  Score=46.62  Aligned_cols=41  Identities=12%  Similarity=0.168  Sum_probs=31.4

Q ss_pred             eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++....+.+++...      .-++++|||+|||+|..++.++..+.
T Consensus        43 ~~~~~~~~~~~l~~~------~~~~~~vLDiG~G~G~~~~~l~~~~~   83 (205)
T 3grz_A           43 NHQTTQLAMLGIERA------MVKPLTVADVGTGSGILAIAAHKLGA   83 (205)
T ss_dssp             CHHHHHHHHHHHHHH------CSSCCEEEEETCTTSHHHHHHHHTTC
T ss_pred             CCccHHHHHHHHHHh------ccCCCEEEEECCCCCHHHHHHHHCCC
Confidence            456666677777653      24678999999999999999888654

>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli}

Probab=96.37  E-value=0.0056  Score=51.50  Aligned_cols=62  Identities=18%  Similarity=0.228  Sum_probs=40.3

Q ss_pred             EEEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           71 LRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        71 l~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+.+.+..+++.+.+....     ...+...+    +++.+..    ....+.+|||||||+|..++.++..+|
T Consensus       184 ~~~~~~~~~~~~~~~pg~Fs-----~~~~d~~~----~~ll~~l----~~~~~~~VLDlGcG~G~~s~~la~~~p  245 (375)
T 4dcm_A          184 VSWKLEGTDWTIHNHANVFS-----RTGLDIGA----RFFMQHL----PENLEGEIVDLGCGNGVIGLTLLDKNP  245 (375)
T ss_dssp             EEEEETTTTEEEEECTTCTT-----CSSCCHHH----HHHHHTC----CCSCCSEEEEETCTTCHHHHHHHHHCT
T ss_pred             eEEEecCCceEEEeCCCccc-----CCcccHHH----HHHHHhC----cccCCCeEEEEeCcchHHHHHHHHHCC
Confidence            45667788899998875321     11222233    3333321    123458999999999999999999864

>1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32

Probab=96.33  E-value=0.0048  Score=46.00  Aligned_cols=27  Identities=22%  Similarity=0.277  Sum_probs=23.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++++|||+|||+|..++.++..+..
T Consensus        47 ~~~~~~vlD~g~G~G~~~~~l~~~~~~   73 (207)
T 1wy7_A           47 DIEGKVVADLGAGTGVLSYGALLLGAK   73 (207)
T ss_dssp             SSTTCEEEEETCTTCHHHHHHHHTTCS
T ss_pred             CCCcCEEEEeeCCCCHHHHHHHHcCCC
Confidence            357889999999999999999887653

>2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A*

Probab=96.25  E-value=0.0042  Score=51.27  Aligned_cols=27  Identities=19%  Similarity=0.519  Sum_probs=23.7

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ...++++|||+|||+|..++.++..+.
T Consensus        61 ~~~~~~~VLDiGcGtG~ls~~la~~g~   87 (340)
T 2fyt_A           61 HIFKDKVVLDVGCGTGILSMFAAKAGA   87 (340)
T ss_dssp             GGTTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             hhcCCCEEEEeeccCcHHHHHHHHcCC
Confidence            356789999999999999999998865

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=96.24  E-value=0.0062  Score=43.02  Aligned_cols=39  Identities=18%  Similarity=0.253  Sum_probs=28.1

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .+...+.+++...    ....++.+|||+|||+|..++.++..
T Consensus         5 r~~~~l~~~~~~~----~~~~~~~~vLd~G~G~G~~~~~l~~~   43 (180)
T 1ej0_A            5 RAWFKLDEIQQSD----KLFKPGMTVVDLGAAPGGWSQYVVTQ   43 (180)
T ss_dssp             HHHHHHHHHHHHH----CCCCTTCEEEEESCTTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHh----CCCCCCCeEEEeCCCCCHHHHHHHHH
Confidence            3445555655542    23456789999999999999988876

>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=96.22  E-value=0.0017  Score=50.57  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+|.+|||+|||+|+....++...+.
T Consensus        59 ~~G~rVLdiG~G~G~~~~~~~~~~~~   84 (236)
T 3orh_A           59 SKGGRVLEVGFGMAIAASKVQEAPID   84 (236)
T ss_dssp             TTCEEEEEECCTTSHHHHHHTTSCEE
T ss_pred             cCCCeEEEECCCccHHHHHHHHhCCc
Confidence            46889999999999999888776554

>1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36

Probab=96.19  E-value=0.0037  Score=47.36  Aligned_cols=39  Identities=8%  Similarity=-0.056  Sum_probs=28.5

Q ss_pred             HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..|.+|+..-     ..-++.+|||+|||+|...+.++..+..+
T Consensus         9 ~~l~~~~~~l-----~~~~~~~vLD~GCG~G~~~~~la~~g~~V   47 (203)
T 1pjz_A            9 KDLQQYWSSL-----NVVPGARVLVPLCGKSQDMSWLSGQGYHV   47 (203)
T ss_dssp             HHHHHHHHHH-----CCCTTCEEEETTTCCSHHHHHHHHHCCEE
T ss_pred             HHHHHHHHhc-----ccCCCCEEEEeCCCCcHhHHHHHHCCCeE
Confidence            3456666542     12367899999999999999998876544

>3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A*

Probab=96.19  E-value=0.0028  Score=50.10  Aligned_cols=26  Identities=23%  Similarity=0.299  Sum_probs=22.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+.+|||+|||+|.+++.+|...+.
T Consensus        79 ~~~~~vLDiG~G~G~~~i~la~~~~~  104 (249)
T 3g89_A           79 QGPLRVLDLGTGAGFPGLPLKIVRPE  104 (249)
T ss_dssp             CSSCEEEEETCTTTTTHHHHHHHCTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHHCCC
Confidence            36789999999999999999987553

>3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus}

Probab=96.14  E-value=0.007  Score=49.85  Aligned_cols=41  Identities=17%  Similarity=0.146  Sum_probs=31.9

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.-|.+.|...    .....|++|||+|||||.....++..+.
T Consensus        68 rg~~Kl~~~l~~~----~~~~~g~~vLDiGcGTG~~t~~L~~~ga  108 (291)
T 3hp7_A           68 RGGLKLEKALAVF----NLSVEDMITIDIGASTGGFTDVMLQNGA  108 (291)
T ss_dssp             TTHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             chHHHHHHHHHhc----CCCccccEEEecCCCccHHHHHHHhCCC
Confidence            4556666767653    3456899999999999999998888765

>1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4

Probab=96.12  E-value=0.013  Score=42.35  Aligned_cols=60  Identities=18%  Similarity=0.196  Sum_probs=36.0

Q ss_pred             EEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904           72 RIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus        72 ~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .-.+.+..+.+......         ..++..-..++.+....    ...++++|||+|||+|..++.++..+
T Consensus        15 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~~----~~~~~~~vLdiG~G~G~~~~~~~~~~   74 (194)
T 1dus_A           15 EDILRGKKLKFKTDSGV---------FSYGKVDKGTKILVENV----VVDKDDDILDLGCGYGVIGIALADEV   74 (194)
T ss_dssp             EEEETTEEEEEEEETTS---------TTTTSCCHHHHHHHHHC----CCCTTCEEEEETCTTSHHHHHHGGGS
T ss_pred             eeecCCCceEEEeCCCc---------CCccccchHHHHHHHHc----ccCCCCeEEEeCCCCCHHHHHHHHcC
Confidence            34567778887765432         11111112333444321    12367899999999999999888763

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=96.09  E-value=0.0038  Score=46.62  Aligned_cols=25  Identities=16%  Similarity=0.234  Sum_probs=22.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.+|||+|||+|..++.++..++
T Consensus        39 ~~~~~vLDiG~G~G~~~~~la~~~~   63 (204)
T 3e05_A           39 QDDLVMWDIGAGSASVSIEASNLMP   63 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHCC
Confidence            4678999999999999999999874

>4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans}

Probab=96.07  E-value=0.0047  Score=49.31  Aligned_cols=37  Identities=14%  Similarity=0.110  Sum_probs=28.0

Q ss_pred             HHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          106 LGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       106 La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      |.+||....      -.+.+|||||||+|.....++..+....
T Consensus        29 l~~~l~~~~------~~~~~vLDvGcGtG~~~~~l~~~~~~v~   65 (257)
T 4hg2_A           29 LFRWLGEVA------PARGDALDCGCGSGQASLGLAEFFERVH   65 (257)
T ss_dssp             HHHHHHHHS------SCSSEEEEESCTTTTTHHHHHTTCSEEE
T ss_pred             HHHHHHHhc------CCCCCEEEEcCCCCHHHHHHHHhCCEEE
Confidence            567777641      2356999999999999999988776543

>2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str}

Probab=96.07  E-value=0.0025  Score=50.33  Aligned_cols=37  Identities=19%  Similarity=0.302  Sum_probs=28.2

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      --+++|+.|+.        ..++++|||||||+|..++.++...+
T Consensus        23 ~D~~lL~~~~~--------~~~~~~VLDlG~G~G~~~l~la~~~~   59 (260)
T 2ozv_A           23 MDAMLLASLVA--------DDRACRIADLGAGAGAAGMAVAARLE   59 (260)
T ss_dssp             CHHHHHHHTCC--------CCSCEEEEECCSSSSHHHHHHHHHCT
T ss_pred             cHHHHHHHHhc--------ccCCCEEEEeCChHhHHHHHHHHhCC
Confidence            35666666643        23567999999999999999998765

>1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20

Probab=96.07  E-value=0.0035  Score=48.40  Aligned_cols=24  Identities=21%  Similarity=0.375  Sum_probs=20.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|..++.++...+
T Consensus        70 ~~~~vLDiG~G~G~~~~~la~~~~   93 (240)
T 1xdz_A           70 QVNTICDVGAGAGFPSLPIKICFP   93 (240)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCT
T ss_pred             CCCEEEEecCCCCHHHHHHHHhCC
Confidence            678999999999999999986543

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=96.06  E-value=0.0036  Score=47.65  Aligned_cols=26  Identities=23%  Similarity=0.324  Sum_probs=22.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|..++.++..+.+
T Consensus        54 ~~~~~vLDlGcG~G~~~~~la~~~~~   79 (204)
T 3njr_A           54 RRGELLWDIGGGSGSVSVEWCLAGGR   79 (204)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCE
Confidence            46789999999999999999887443

>3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A*

Probab=96.05  E-value=0.0039  Score=47.69  Aligned_cols=26  Identities=12%  Similarity=-0.137  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|..++.++..+..
T Consensus        77 ~~~~~vLD~gcG~G~~~~~la~~~~~  102 (241)
T 3gdh_A           77 FKCDVVVDAFCGVGGNTIQFALTGMR  102 (241)
T ss_dssp             SCCSEEEETTCTTSHHHHHHHHTTCE
T ss_pred             cCCCEEEECccccCHHHHHHHHcCCE
Confidence            37899999999999999999987644

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=96.03  E-value=0.0087  Score=44.63  Aligned_cols=27  Identities=19%  Similarity=0.311  Sum_probs=22.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++.+|||+|||+|..++.++..+.+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~la~~~~~  101 (210)
T 3lbf_A           75 LTPQSRVLEIGTGSGYQTAILAHLVQH  101 (210)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSE
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHhCCE
Confidence            356789999999999999999887543

>2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A

Probab=96.02  E-value=0.0067  Score=45.63  Aligned_cols=26  Identities=19%  Similarity=0.093  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++++|||+|||+|.....++..++.
T Consensus        41 ~~~~~vLDiGcG~G~~~~~l~~~~~~   66 (250)
T 2p7i_A           41 FRPGNLLELGSFKGDFTSRLQEHFND   66 (250)
T ss_dssp             CCSSCEEEESCTTSHHHHHHTTTCSC
T ss_pred             cCCCcEEEECCCCCHHHHHHHHhCCc
Confidence            57789999999999999999887764

>2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii}

Probab=96.00  E-value=0.0068  Score=43.50  Aligned_cols=36  Identities=14%  Similarity=0.065  Sum_probs=26.3

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhh
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      ...+..++....    ...++.+|||+|||+|..++.++.
T Consensus        20 ~~~~~~~~~~~~----~~~~~~~vLdiG~G~G~~~~~l~~   55 (183)
T 2yxd_A           20 KEEIRAVSIGKL----NLNKDDVVVDVGCGSGGMTVEIAK   55 (183)
T ss_dssp             CHHHHHHHHHHH----CCCTTCEEEEESCCCSHHHHHHHT
T ss_pred             HHHHHHHHHHHc----CCCCCCEEEEeCCCCCHHHHHHHh
Confidence            344555555532    234678999999999999999887

>2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A

Probab=95.99  E-value=0.0071  Score=49.87  Aligned_cols=26  Identities=19%  Similarity=0.462  Sum_probs=23.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|..++.++..+.
T Consensus        48 ~~~~~~VLDiGcGtG~ls~~la~~g~   73 (348)
T 2y1w_A           48 DFKDKIVLDVGCGSGILSFFAAQAGA   73 (348)
T ss_dssp             GTTTCEEEEETCTTSHHHHHHHHTTC
T ss_pred             cCCcCEEEEcCCCccHHHHHHHhCCC
Confidence            45789999999999999999998764

>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46

Probab=95.99  E-value=0.0038  Score=47.23  Aligned_cols=25  Identities=20%  Similarity=0.208  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||||||+|..++.++..+.
T Consensus        52 ~~~~~vLDlGcGtG~~~~~~~~~~~   76 (201)
T 2ift_A           52 IHQSECLDGFAGSGSLGFEALSRQA   76 (201)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTC
T ss_pred             cCCCeEEEcCCccCHHHHHHHHccC
Confidence            4788999999999999997666554

>3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413}

Probab=95.94  E-value=0.0074  Score=46.09  Aligned_cols=28  Identities=14%  Similarity=0.258  Sum_probs=23.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .-++.+|||+|||+|...+.++..++..
T Consensus        54 ~~~~~~vLD~GcG~G~~~~~la~~~~~v   81 (245)
T 3ggd_A           54 FNPELPLIDFACGNGTQTKFLSQFFPRV   81 (245)
T ss_dssp             SCTTSCEEEETCTTSHHHHHHHHHSSCE
T ss_pred             cCCCCeEEEEcCCCCHHHHHHHHhCCCE
Confidence            3467899999999999999999887643

>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46

Probab=95.93  E-value=0.0038  Score=47.26  Aligned_cols=25  Identities=20%  Similarity=0.311  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +++++|||||||+|..++.++..+.
T Consensus        53 ~~~~~vLDlgcG~G~~~~~l~~~~~   77 (202)
T 2fpo_A           53 IVDAQCLDCFAGSGALGLEALSRYA   77 (202)
T ss_dssp             HTTCEEEETTCTTCHHHHHHHHTTC
T ss_pred             cCCCeEEEeCCCcCHHHHHHHhcCC
Confidence            4789999999999999997666554

>3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A*

Probab=95.92  E-value=0.004  Score=51.48  Aligned_cols=27  Identities=26%  Similarity=0.530  Sum_probs=24.0

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ...++++|||+|||+|..++.++..+.
T Consensus        63 ~~~~~~~VLDvGcG~G~~~~~la~~g~   89 (349)
T 3q7e_A           63 HLFKDKVVLDVGSGTGILCMFAAKAGA   89 (349)
T ss_dssp             HHHTTCEEEEESCTTSHHHHHHHHTTC
T ss_pred             ccCCCCEEEEEeccchHHHHHHHHCCC
Confidence            457899999999999999999998865

>1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6

Probab=95.92  E-value=0.0047  Score=50.55  Aligned_cols=26  Identities=23%  Similarity=0.557  Sum_probs=23.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|..++.++..+.
T Consensus        36 ~~~~~~VLDiGcGtG~ls~~la~~g~   61 (328)
T 1g6q_1           36 LFKDKIVLDVGCGTGILSMFAAKHGA   61 (328)
T ss_dssp             HHTTCEEEEETCTTSHHHHHHHHTCC
T ss_pred             hcCCCEEEEecCccHHHHHHHHHCCC
Confidence            46789999999999999999998765

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=95.92  E-value=0.0058  Score=46.16  Aligned_cols=25  Identities=16%  Similarity=0.230  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~~   81 (223)
T 3duw_A           57 QGARNILEIGTLGGYSTIWLARGLS   81 (223)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCC
T ss_pred             hCCCEEEEecCCccHHHHHHHHhCC
Confidence            4678999999999999999988754

>1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A*

Probab=95.91  E-value=0.0075  Score=43.51  Aligned_cols=36  Identities=14%  Similarity=0.004  Sum_probs=26.5

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+..++....    ...++++|||+|||+|..++.++..+
T Consensus        20 ~~~~~~~~~~----~~~~~~~vldiG~G~G~~~~~l~~~~   55 (192)
T 1l3i_A           20 EVRCLIMCLA----EPGKNDVAVDVGCGTGGVTLELAGRV   55 (192)
T ss_dssp             HHHHHHHHHH----CCCTTCEEEEESCTTSHHHHHHHTTS
T ss_pred             HHHHHHHHhc----CCCCCCEEEEECCCCCHHHHHHHHhc
Confidence            3445555432    24567899999999999999888765

>1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32

Probab=95.89  E-value=0.007  Score=45.04  Aligned_cols=26  Identities=15%  Similarity=0.307  Sum_probs=22.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|..++.++..+.
T Consensus        49 ~~~~~~vlD~gcG~G~~~~~l~~~~~   74 (200)
T 1ne2_A           49 NIGGRSVIDAGTGNGILACGSYLLGA   74 (200)
T ss_dssp             SSBTSEEEEETCTTCHHHHHHHHTTB
T ss_pred             CCCCCEEEEEeCCccHHHHHHHHcCC
Confidence            35788999999999999999988754

>3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides}

Probab=95.89  E-value=0.0034  Score=50.75  Aligned_cols=29  Identities=7%  Similarity=0.068  Sum_probs=24.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ..++.+|||||||+|..++.++..+..+.
T Consensus        43 l~~g~~VLDlGcGtG~~a~~La~~g~~V~   71 (261)
T 3iv6_A           43 IVPGSTVAVIGASTRFLIEKALERGASVT   71 (261)
T ss_dssp             CCTTCEEEEECTTCHHHHHHHHHTTCEEE
T ss_pred             CCCcCEEEEEeCcchHHHHHHHhcCCEEE
Confidence            34678999999999999999998776543

>1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3

Probab=95.89  E-value=0.0049  Score=47.35  Aligned_cols=24  Identities=13%  Similarity=0.153  Sum_probs=20.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -+|.+|||||||+|.....++...
T Consensus        56 ~~g~~VLDlGcGtG~~~~~la~~~   79 (210)
T 1nt2_A           56 RGDERVLYLGAASGTTVSHLADIV   79 (210)
T ss_dssp             CSSCEEEEETCTTSHHHHHHHHHT
T ss_pred             CCCCEEEEECCcCCHHHHHHHHHc
Confidence            367899999999999988887765

>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A*

Probab=95.84  E-value=0.0094  Score=45.55  Aligned_cols=41  Identities=20%  Similarity=0.216  Sum_probs=29.0

Q ss_pred             eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904           99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus        99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      +++....+.+.+...    -..-++.+|||+|||+|...+.++..
T Consensus        36 ~~~~~~~~~~~~~~~----~~~~~~~~vLdiG~G~G~~~~~l~~~   76 (266)
T 3ujc_A           36 ISSGGLEATKKILSD----IELNENSKVLDIGSGLGGGCMYINEK   76 (266)
T ss_dssp             CSTTHHHHHHHHTTT----CCCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             cccchHHHHHHHHHh----cCCCCCCEEEEECCCCCHHHHHHHHH
Confidence            344555555655553    12346789999999999999988875

>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str}

Probab=95.81  E-value=0.0063  Score=46.74  Aligned_cols=26  Identities=19%  Similarity=0.351  Sum_probs=23.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|...+.++..++
T Consensus        42 ~~~~~~vLD~GcG~G~~~~~l~~~~~   67 (253)
T 3g5l_A           42 DFNQKTVLDLGCGFGWHCIYAAEHGA   67 (253)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred             ccCCCEEEEECCCCCHHHHHHHHcCC
Confidence            35789999999999999999988876

>3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus}

Probab=95.81  E-value=0.0052  Score=46.54  Aligned_cols=23  Identities=17%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCC-CChhHHHHhhc
Q 031904          121 LHGKKIVELGSG-CGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaG-tGL~Gi~aa~l  143 (150)
                      -++++|||+||| +|..++.++..
T Consensus        54 ~~~~~vLDlG~G~~G~~~~~la~~   77 (230)
T 3evz_A           54 RGGEVALEIGTGHTAMMALMAEKF   77 (230)
T ss_dssp             CSSCEEEEECCTTTCHHHHHHHHH
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHh
Confidence            467899999999 99999999887

>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP}

Probab=95.79  E-value=0.005  Score=46.34  Aligned_cols=25  Identities=16%  Similarity=0.187  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.+|||+|||+|..++.++...|
T Consensus        26 ~~~~~vLDiGcG~G~~~~~la~~~p   50 (218)
T 3mq2_A           26 QYDDVVLDVGTGDGKHPYKVARQNP   50 (218)
T ss_dssp             TSSEEEEEESCTTCHHHHHHHHHCT
T ss_pred             cCCCEEEEecCCCCHHHHHHHHHCC
Confidence            3577999999999999999998754

>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*

Probab=95.79  E-value=0.0038  Score=47.92  Aligned_cols=24  Identities=17%  Similarity=0.272  Sum_probs=20.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++.+|||+|||+|...+.++..++
T Consensus        60 ~~~~vLDiGcGtG~~~~~l~~~~~   83 (236)
T 1zx0_A           60 KGGRVLEVGFGMAIAASKVQEAPI   83 (236)
T ss_dssp             TCEEEEEECCTTSHHHHHHHTSCE
T ss_pred             CCCeEEEEeccCCHHHHHHHhcCC
Confidence            567999999999999998877654

>3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans}

Probab=95.77  E-value=0.0057  Score=46.67  Aligned_cols=26  Identities=15%  Similarity=0.097  Sum_probs=22.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -++++|||+|||+|...+.++..+..
T Consensus        47 ~~~~~vLDiGcG~G~~~~~l~~~~~~   72 (226)
T 3m33_A           47 TPQTRVLEAGCGHGPDAARFGPQAAR   72 (226)
T ss_dssp             CTTCEEEEESCTTSHHHHHHGGGSSE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHcCCE
Confidence            46789999999999999999887543

>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli}

Probab=95.76  E-value=0.0047  Score=48.83  Aligned_cols=25  Identities=16%  Similarity=0.324  Sum_probs=21.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ...+|||||||+|..++.++...|.
T Consensus        49 ~~~~VLDlGCG~GplAl~l~~~~p~   73 (200)
T 3fzg_A           49 HVSSILDFGCGFNPLALYQWNENEK   73 (200)
T ss_dssp             CCSEEEEETCTTHHHHHHHHCSSCC
T ss_pred             CCCeEEEecCCCCHHHHHHHhcCCC
Confidence            4679999999999999999887664

>3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A*

Probab=95.73  E-value=0.0055  Score=45.84  Aligned_cols=25  Identities=12%  Similarity=-0.003  Sum_probs=21.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|...+.++..+.
T Consensus        50 ~~~~~vLDiGcG~G~~~~~l~~~~~   74 (216)
T 3ofk_A           50 GAVSNGLEIGCAAGAFTEKLAPHCK   74 (216)
T ss_dssp             SSEEEEEEECCTTSHHHHHHGGGEE
T ss_pred             CCCCcEEEEcCCCCHHHHHHHHcCC
Confidence            4568999999999999998887654

>2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens}

Probab=95.73  E-value=0.012  Score=43.47  Aligned_cols=35  Identities=20%  Similarity=0.100  Sum_probs=26.9

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.++|...      ..++.+|||+|||+|...+.++..++
T Consensus        31 ~~~~~l~~~------~~~~~~vLdiGcG~G~~~~~l~~~~~   65 (215)
T 2pxx_A           31 SFRALLEPE------LRPEDRILVLGCGNSALSYELFLGGF   65 (215)
T ss_dssp             HHHHHHGGG------CCTTCCEEEETCTTCSHHHHHHHTTC
T ss_pred             HHHHHHHHh------cCCCCeEEEECCCCcHHHHHHHHcCC
Confidence            355555542      34678999999999999999988775

>3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A*

Probab=95.72  E-value=0.0066  Score=47.64  Aligned_cols=26  Identities=8%  Similarity=0.070  Sum_probs=22.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+++|||+|||+|...+.++..+..
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~~~   81 (293)
T 3thr_A           56 HGCHRVLDVACGTGVDSIMLVEEGFS   81 (293)
T ss_dssp             TTCCEEEETTCTTSHHHHHHHHTTCE
T ss_pred             cCCCEEEEecCCCCHHHHHHHHCCCe
Confidence            36789999999999999999887654

>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A

Probab=95.71  E-value=0.012  Score=44.23  Aligned_cols=42  Identities=14%  Similarity=0.107  Sum_probs=29.5

Q ss_pred             echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++......+++....    ...++++|||+|||+|.....++..++
T Consensus        11 ~~~~~~~~~~l~~~l----~~~~~~~vLDiGcG~G~~~~~l~~~~~   52 (219)
T 3jwg_A           11 LNLNQQRLGTVVAVL----KSVNAKKVIDLGCGEGNLLSLLLKDKS   52 (219)
T ss_dssp             -CHHHHHHHHHHHHH----HHTTCCEEEEETCTTCHHHHHHHTSTT
T ss_pred             CcchHHHHHHHHHHH----hhcCCCEEEEecCCCCHHHHHHHhcCC
Confidence            344445555655532    224678999999999999999988775

>2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A*

Probab=95.70  E-value=0.0086  Score=47.49  Aligned_cols=41  Identities=12%  Similarity=-0.036  Sum_probs=29.3

Q ss_pred             HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ..|.+|+....    ...++.+|||+|||+|...+.+|..|..+.
T Consensus        54 ~~l~~~~~~~~----~~~~~~~vLD~GCG~G~~~~~La~~G~~V~   94 (252)
T 2gb4_A           54 QLLKKHLDTFL----KGQSGLRVFFPLCGKAIEMKWFADRGHTVV   94 (252)
T ss_dssp             HHHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHhc----cCCCCCeEEEeCCCCcHHHHHHHHCCCeEE
Confidence            35666665421    113678999999999999999998876543

>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A*

Probab=95.67  E-value=0.0068  Score=48.32  Aligned_cols=26  Identities=15%  Similarity=0.185  Sum_probs=21.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .-.|.+|||||||+|...+.++...+
T Consensus        68 ~~~~~~vLDlGcGtG~~~~~la~~~~   93 (261)
T 4gek_A           68 VQPGTQVYDLGCSLGAATLSVRRNIH   93 (261)
T ss_dssp             CCTTCEEEEETCTTTHHHHHHHHTCC
T ss_pred             CCCCCEEEEEeCCCCHHHHHHHHhcC
Confidence            34678999999999999988887643

>1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53

Probab=95.66  E-value=0.0074  Score=45.56  Aligned_cols=24  Identities=29%  Similarity=0.254  Sum_probs=21.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+|||||||+|..++.++...|
T Consensus        41 ~~~~vLDiGcG~G~~~~~la~~~p   64 (214)
T 1yzh_A           41 DNPIHVEVGSGKGAFVSGMAKQNP   64 (214)
T ss_dssp             CCCEEEEESCTTSHHHHHHHHHCT
T ss_pred             CCCeEEEEccCcCHHHHHHHHHCC
Confidence            467999999999999999988765

>1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20

Probab=95.65  E-value=0.0068  Score=45.01  Aligned_cols=25  Identities=32%  Similarity=0.582  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +++++|||+|||+|..++.++...+
T Consensus        64 ~~~~~vLDiG~G~G~~~~~l~~~~~   88 (207)
T 1jsx_A           64 LQGERFIDVGTGPGLPGIPLSIVRP   88 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCT
T ss_pred             cCCCeEEEECCCCCHHHHHHHHHCC
Confidence            3688999999999999999988644

>1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7

Probab=95.63  E-value=0.017  Score=43.68  Aligned_cols=26  Identities=27%  Similarity=0.491  Sum_probs=22.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++.+|||+|||+|...+.++..+.
T Consensus        68 ~~~~~~vLdiG~G~G~~~~~l~~~~~   93 (231)
T 1vbf_A           68 LHKGQKVLEIGTGIGYYTALIAEIVD   93 (231)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSS
T ss_pred             CCCCCEEEEEcCCCCHHHHHHHHHcC
Confidence            34678999999999999999888763

>3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens}

Probab=95.63  E-value=0.0074  Score=48.25  Aligned_cols=26  Identities=15%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..+++++|||+|||+|..++.++...
T Consensus        43 ~~~~~~~VLDiGCG~G~~~~~la~~~   68 (292)
T 3g07_A           43 EWFRGRDVLDLGCNVGHLTLSIACKW   68 (292)
T ss_dssp             GGTTTSEEEEESCTTCHHHHHHHHHT
T ss_pred             hhcCCCcEEEeCCCCCHHHHHHHHHc
Confidence            45789999999999999999998864

>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei}

Probab=95.60  E-value=0.0071  Score=45.28  Aligned_cols=26  Identities=19%  Similarity=0.213  Sum_probs=22.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -++++|||+|||+|...+.++..+..
T Consensus        29 ~~~~~vLdiG~G~G~~~~~l~~~~~~   54 (235)
T 3sm3_A           29 QEDDEILDIGCGSGKISLELASKGYS   54 (235)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTTCE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhCCCe
Confidence            36789999999999999998887543

>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A*

Probab=95.57  E-value=0.0081  Score=46.00  Aligned_cols=25  Identities=24%  Similarity=0.291  Sum_probs=22.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++.+|||+|||+|...+.++..++
T Consensus        45 ~~~~~vLDiG~G~G~~~~~l~~~~~   69 (257)
T 3f4k_A           45 TDDAKIADIGCGTGGQTLFLADYVK   69 (257)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHhCC
Confidence            4578999999999999999998876

>3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A*

Probab=95.54  E-value=0.011  Score=45.60  Aligned_cols=25  Identities=12%  Similarity=0.255  Sum_probs=21.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||+|||+|...+.++..++.
T Consensus        50 ~~~~vLDiGcG~G~~~~~l~~~~~~   74 (263)
T 3pfg_A           50 KAASLLDVACGTGMHLRHLADSFGT   74 (263)
T ss_dssp             TCCEEEEETCTTSHHHHHHTTTSSE
T ss_pred             CCCcEEEeCCcCCHHHHHHHHcCCe
Confidence            5689999999999999999887654

>3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.54  E-value=0.0064  Score=48.74  Aligned_cols=27  Identities=19%  Similarity=0.298  Sum_probs=22.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..+.+|||+|||+|.....++..+.+.
T Consensus        28 ~~~~~VLEIG~G~G~lt~~La~~~~~V   54 (255)
T 3tqs_A           28 QKTDTLVEIGPGRGALTDYLLTECDNL   54 (255)
T ss_dssp             CTTCEEEEECCTTTTTHHHHTTTSSEE
T ss_pred             CCcCEEEEEcccccHHHHHHHHhCCEE
Confidence            467899999999999999998876543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=95.53  E-value=0.0077  Score=43.36  Aligned_cols=25  Identities=20%  Similarity=0.267  Sum_probs=21.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        24 ~~~~~vldiG~G~G~~~~~l~~~~~   48 (178)
T 3hm2_A           24 KPHETLWDIGGGSGSIAIEWLRSTP   48 (178)
T ss_dssp             CTTEEEEEESTTTTHHHHHHHTTSS
T ss_pred             cCCCeEEEeCCCCCHHHHHHHHHCC
Confidence            4678999999999999999887643

>2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15

Probab=95.52  E-value=0.0022  Score=50.43  Aligned_cols=26  Identities=19%  Similarity=0.353  Sum_probs=21.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+|++|||||||+|+..+.++..+.
T Consensus        53 ~~~g~~vLDiGCG~G~~~~~~~~~~~   78 (263)
T 2a14_A           53 GLQGDTLIDIGSGPTIYQVLAACDSF   78 (263)
T ss_dssp             SCCEEEEEESSCTTCCGGGTTGGGTE
T ss_pred             CCCCceEEEeCCCccHHHHHHHHhhh
Confidence            45788999999999988877766554

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=95.52  E-value=0.015  Score=43.49  Aligned_cols=25  Identities=32%  Similarity=0.652  Sum_probs=21.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..++.+|||+|||+|...+.++..+
T Consensus        75 ~~~~~~vLdiG~G~G~~~~~l~~~~   99 (215)
T 2yxe_A           75 LKPGMKVLEIGTGCGYHAAVTAEIV   99 (215)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEECCCccHHHHHHHHHh
Confidence            3567899999999999999888865

>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis}

Probab=95.52  E-value=0.012  Score=44.44  Aligned_cols=25  Identities=12%  Similarity=0.052  Sum_probs=21.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++.+|||+|||+|.....++..+..
T Consensus        53 ~~~~vLDiG~G~G~~~~~l~~~~~~   77 (242)
T 3l8d_A           53 KEAEVLDVGCGDGYGTYKLSRTGYK   77 (242)
T ss_dssp             TTCEEEEETCTTSHHHHHHHHTTCE
T ss_pred             CCCeEEEEcCCCCHHHHHHHHcCCe
Confidence            6789999999999999988887543

>2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53

Probab=95.52  E-value=0.0088  Score=45.65  Aligned_cols=24  Identities=21%  Similarity=0.218  Sum_probs=21.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+|||+|||+|...+.+|...|
T Consensus        38 ~~~~vLDiGcG~G~~~~~la~~~p   61 (213)
T 2fca_A           38 DNPIHIEVGTGKGQFISGMAKQNP   61 (213)
T ss_dssp             CCCEEEEECCTTSHHHHHHHHHCT
T ss_pred             CCceEEEEecCCCHHHHHHHHHCC
Confidence            467999999999999999988754

>3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440}

Probab=95.51  E-value=0.0082  Score=44.58  Aligned_cols=26  Identities=15%  Similarity=0.135  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++++|||+|||+|.....++..+..
T Consensus        51 ~~~~~vLdiG~G~G~~~~~l~~~~~~   76 (227)
T 3e8s_A           51 RQPERVLDLGCGEGWLLRALADRGIE   76 (227)
T ss_dssp             TCCSEEEEETCTTCHHHHHHHTTTCE
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHCCCE
Confidence            45689999999999999988877543

>1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.51  E-value=0.0077  Score=45.05  Aligned_cols=25  Identities=16%  Similarity=0.030  Sum_probs=21.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||+|||+|...+.++..++.
T Consensus        38 ~~~~vLDlG~G~G~~~~~l~~~~~~   62 (227)
T 1ve3_A           38 KRGKVLDLACGVGGFSFLLEDYGFE   62 (227)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHTTCE
T ss_pred             CCCeEEEEeccCCHHHHHHHHcCCE
Confidence            3789999999999999999887763

>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus}

Probab=95.50  E-value=0.018  Score=43.95  Aligned_cols=26  Identities=12%  Similarity=0.114  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -++++|||+|||+|.....++..+..
T Consensus        40 ~~~~~vLDiGcG~G~~~~~l~~~~~~   65 (240)
T 3dli_A           40 KGCRRVLDIGCGRGEFLELCKEEGIE   65 (240)
T ss_dssp             TTCSCEEEETCTTTHHHHHHHHHTCC
T ss_pred             cCCCeEEEEeCCCCHHHHHHHhCCCc
Confidence            45789999999999999988877554

>3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413}

Probab=95.50  E-value=0.013  Score=45.68  Aligned_cols=37  Identities=16%  Similarity=0.127  Sum_probs=27.1

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+++....    ...++++|||+|||+|...+.++..+.
T Consensus        21 ~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~~~   57 (261)
T 3ege_A           21 RIVNAIINLL----NLPKGSVIADIGAGTGGYSVALANQGL   57 (261)
T ss_dssp             HHHHHHHHHH----CCCTTCEEEEETCTTSHHHHHHHTTTC
T ss_pred             HHHHHHHHHh----CCCCCCEEEEEcCcccHHHHHHHhCCC
Confidence            4566666542    134678999999999999998887443

>2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus}

Probab=95.49  E-value=0.014  Score=46.84  Aligned_cols=37  Identities=22%  Similarity=0.228  Sum_probs=27.2

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++..|...+..     ....++++|||||||+|.....++..
T Consensus        59 ~a~KL~~i~~~-----~~~~~g~~VLDlGcGtG~~s~~la~~   95 (265)
T 2oxt_A           59 GTAKLAWMEER-----GYVELTGRVVDLGCGRGGWSYYAASR   95 (265)
T ss_dssp             HHHHHHHHHHH-----TSCCCCEEEEEESCTTSHHHHHHHTS
T ss_pred             HHHHHHHHHHc-----CCCCCCCEEEEeCcCCCHHHHHHHHc
Confidence            45555555544     23446889999999999999988876

>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...

Probab=95.49  E-value=0.0089  Score=45.43  Aligned_cols=24  Identities=21%  Similarity=0.275  Sum_probs=21.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++++|||||||+|..++.++...
T Consensus        57 ~~~~~vLdiG~G~G~~~~~la~~~   80 (221)
T 3u81_A           57 YSPSLVLELGAYCGYSAVRMARLL   80 (221)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTS
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhC
Confidence            467899999999999999998854

>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae}

Probab=95.48  E-value=0.0081  Score=47.13  Aligned_cols=26  Identities=19%  Similarity=0.142  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|..++.++..+..
T Consensus       119 ~~~~~vLD~GcG~G~~~~~l~~~g~~  144 (286)
T 3m70_A          119 ISPCKVLDLGCGQGRNSLYLSLLGYD  144 (286)
T ss_dssp             SCSCEEEEESCTTCHHHHHHHHTTCE
T ss_pred             cCCCcEEEECCCCCHHHHHHHHCCCe
Confidence            37899999999999999999887654

>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}

Probab=95.47  E-value=0.015  Score=45.57  Aligned_cols=26  Identities=12%  Similarity=0.069  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|...+.++..+..
T Consensus        67 ~~~~~vLDiGcG~G~~~~~l~~~~~~   92 (285)
T 4htf_A           67 PQKLRVLDAGGGEGQTAIKMAERGHQ   92 (285)
T ss_dssp             SSCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             CCCCEEEEeCCcchHHHHHHHHCCCE
Confidence            34789999999999999998887543

>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}

Probab=95.46  E-value=0.0096  Score=45.84  Aligned_cols=25  Identities=24%  Similarity=0.171  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        70 ~~~~~vLDiG~G~G~~~~~la~~~~   94 (232)
T 3ntv_A           70 NNVKNILEIGTAIGYSSMQFASISD   94 (232)
T ss_dssp             HTCCEEEEECCSSSHHHHHHHTTCT
T ss_pred             cCCCEEEEEeCchhHHHHHHHHhCC
Confidence            4678999999999999999998554

>2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E

Probab=95.46  E-value=0.0073  Score=46.83  Aligned_cols=26  Identities=19%  Similarity=0.249  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -++++|||+|||+|..++.++..++.
T Consensus        48 ~~~~~vLDiGcG~G~~~~~la~~~~~   73 (246)
T 2vdv_E           48 TKKVTIADIGCGFGGLMIDLSPAFPE   73 (246)
T ss_dssp             SCCEEEEEETCTTSHHHHHHHHHSTT
T ss_pred             CCCCEEEEEcCCCCHHHHHHHHhCCC
Confidence            35789999999999999999988764

>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1

Probab=95.45  E-value=0.012  Score=44.36  Aligned_cols=25  Identities=24%  Similarity=0.337  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        68 ~~~~~vLdiG~G~G~~~~~la~~~~   92 (229)
T 2avd_A           68 IQAKKALDLGTFTGYSALALALALP   92 (229)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHTTSC
T ss_pred             cCCCEEEEEcCCccHHHHHHHHhCC
Confidence            4678999999999999999988643

>2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A*

Probab=95.44  E-value=0.013  Score=47.33  Aligned_cols=38  Identities=21%  Similarity=0.166  Sum_probs=27.1

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .++..|...+..     ....+|++|||||||+|.....++..
T Consensus        66 R~a~KL~~i~~~-----~~~~~g~~VLDlGcGtG~~s~~la~~  103 (276)
T 2wa2_A           66 RGTAKLAWIDER-----GGVELKGTVVDLGCGRGSWSYYAASQ  103 (276)
T ss_dssp             HHHHHHHHHHHT-----TSCCCCEEEEEESCTTCHHHHHHHTS
T ss_pred             hHHHHHHHHHHc-----CCCCCCCEEEEeccCCCHHHHHHHHc
Confidence            345555544433     23346889999999999999988876

>3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A*

Probab=95.44  E-value=0.0098  Score=45.93  Aligned_cols=25  Identities=20%  Similarity=0.166  Sum_probs=21.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+|||+|||+|...+.+|...|.
T Consensus        34 ~~~~vLDiGcG~G~~~~~lA~~~p~   58 (218)
T 3dxy_A           34 EAPVTLEIGFGMGASLVAMAKDRPE   58 (218)
T ss_dssp             CCCEEEEESCTTCHHHHHHHHHCTT
T ss_pred             CCCeEEEEeeeChHHHHHHHHHCCC
Confidence            5679999999999999999987764

>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21

Probab=95.43  E-value=0.018  Score=44.03  Aligned_cols=25  Identities=28%  Similarity=0.365  Sum_probs=20.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..++.+|||+|||+|...+.++...
T Consensus        34 ~~~~~~VLDiGcG~G~~~~~la~~~   58 (256)
T 1nkv_A           34 MKPGTRILDLGSGSGEMLCTWARDH   58 (256)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHHHT
T ss_pred             CCCCCEEEEECCCCCHHHHHHHHhc
Confidence            3467899999999999998887653

>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A

Probab=95.43  E-value=0.01  Score=44.63  Aligned_cols=25  Identities=16%  Similarity=0.258  Sum_probs=22.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|.....++..++
T Consensus        28 ~~~~~vLDiGcG~G~~~~~l~~~~~   52 (217)
T 3jwh_A           28 SNARRVIDLGCGQGNLLKILLKDSF   52 (217)
T ss_dssp             TTCCEEEEETCTTCHHHHHHHHCTT
T ss_pred             cCCCEEEEeCCCCCHHHHHHHhhCC
Confidence            4678999999999999999988765

>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris}

Probab=95.43  E-value=0.0076  Score=44.99  Aligned_cols=25  Identities=32%  Similarity=0.337  Sum_probs=21.4

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||+|||+|.....++..+..
T Consensus        43 ~~~~vLDiGcG~G~~~~~l~~~~~~   67 (211)
T 3e23_A           43 AGAKILELGCGAGYQAEAMLAAGFD   67 (211)
T ss_dssp             TTCEEEESSCTTSHHHHHHHHTTCE
T ss_pred             CCCcEEEECCCCCHHHHHHHHcCCe
Confidence            5789999999999999988876543

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=95.42  E-value=0.011  Score=46.10  Aligned_cols=25  Identities=24%  Similarity=0.405  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        62 ~~~~~VLdiG~G~G~~~~~la~~~~   86 (248)
T 3tfw_A           62 TQAKRILEIGTLGGYSTIWMARELP   86 (248)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTSC
T ss_pred             cCCCEEEEecCCchHHHHHHHHhCC
Confidence            4678999999999999999998744

>3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp}

Probab=95.42  E-value=0.0094  Score=46.69  Aligned_cols=25  Identities=28%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.+|...+
T Consensus        59 ~~~~~VLDiG~G~G~~t~~la~~~~   83 (242)
T 3r3h_A           59 TRAKKVLELGTFTGYSALAMSLALP   83 (242)
T ss_dssp             HTCSEEEEEESCCSHHHHHHHHTSC
T ss_pred             cCcCEEEEeeCCcCHHHHHHHHhCC
Confidence            4678999999999999999998654

>1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43

Probab=95.42  E-value=0.0091  Score=45.69  Aligned_cols=26  Identities=12%  Similarity=0.069  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++++|||+|||+|...+.++..+..
T Consensus        40 ~~~~~vLDlGcG~G~~~~~l~~~~~~   65 (252)
T 1wzn_A           40 REVRRVLDLACGTGIPTLELAERGYE   65 (252)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             cCCCEEEEeCCCCCHHHHHHHHCCCe
Confidence            35689999999999999998876543

>3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli}

Probab=95.41  E-value=0.036  Score=46.01  Aligned_cols=40  Identities=10%  Similarity=0.019  Sum_probs=28.4

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      +-.+..++...     ....+++|||||||+|..++.+|..+..+
T Consensus       199 ~~~l~~~~~~~-----~~~~~~~vLDl~cG~G~~~l~la~~~~~V  238 (369)
T 3bt7_A          199 NIQMLEWALDV-----TKGSKGDLLELYCGNGNFSLALARNFDRV  238 (369)
T ss_dssp             HHHHHHHHHHH-----TTTCCSEEEEESCTTSHHHHHHGGGSSEE
T ss_pred             HHHHHHHHHHH-----hhcCCCEEEEccCCCCHHHHHHHhcCCEE
Confidence            34556666553     12346889999999999999998855443

>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*

Probab=95.41  E-value=0.0079  Score=52.99  Aligned_cols=28  Identities=14%  Similarity=0.052  Sum_probs=24.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      -++.+|||+|||.|+.+..+|++|..+.
T Consensus        65 ~~~~~vLDvGCG~G~~~~~la~~ga~V~   92 (569)
T 4azs_A           65 GRPLNVLDLGCAQGFFSLSLASKGATIV   92 (569)
T ss_dssp             TSCCEEEEETCTTSHHHHHHHHTTCEEE
T ss_pred             CCCCeEEEECCCCcHHHHHHHhCCCEEE
Confidence            3567999999999999999999987653

>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0

Probab=95.40  E-value=0.01  Score=44.70  Aligned_cols=25  Identities=20%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        63 ~~~~~vLdiG~G~G~~~~~la~~~~   87 (225)
T 3tr6_A           63 MQAKKVIDIGTFTGYSAIAMGLALP   87 (225)
T ss_dssp             HTCSEEEEECCTTSHHHHHHHTTCC
T ss_pred             hCCCEEEEeCCcchHHHHHHHHhCC
Confidence            4678999999999999999988643

>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana}

Probab=95.40  E-value=0.009  Score=45.43  Aligned_cols=25  Identities=20%  Similarity=-0.016  Sum_probs=20.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +++.+|||+|||+|...+.++..+.
T Consensus        65 ~~~~~vLDiGcG~G~~~~~l~~~~~   89 (235)
T 3lcc_A           65 LPLGRALVPGCGGGHDVVAMASPER   89 (235)
T ss_dssp             SCCEEEEEETCTTCHHHHHHCBTTE
T ss_pred             CCCCCEEEeCCCCCHHHHHHHhCCC
Confidence            4556999999999999988876543

>2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A*

Probab=95.36  E-value=0.01  Score=43.36  Aligned_cols=25  Identities=20%  Similarity=0.251  Sum_probs=21.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|...+.++..+.
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~~   55 (199)
T 2xvm_A           31 VKPGKTLDLGCGNGRNSLYLAANGY   55 (199)
T ss_dssp             SCSCEEEEETCTTSHHHHHHHHTTC
T ss_pred             cCCCeEEEEcCCCCHHHHHHHHCCC
Confidence            4678999999999999998887654

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=95.35  E-value=0.014  Score=43.13  Aligned_cols=24  Identities=25%  Similarity=0.310  Sum_probs=20.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .-++++|||+|||+|..++.++..
T Consensus        20 ~~~~~~vLDlGcG~G~~~~~l~~~   43 (197)
T 3eey_A           20 VKEGDTVVDATCGNGNDTAFLASL   43 (197)
T ss_dssp             CCTTCEEEESCCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHH
Confidence            346789999999999999988876

>3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A*

Probab=95.34  E-value=0.0093  Score=44.21  Aligned_cols=26  Identities=19%  Similarity=0.075  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -.+++|||+|||+|.....++..+..
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~~   70 (218)
T 3ou2_A           45 NIRGDVLELASGTGYWTRHLSGLADR   70 (218)
T ss_dssp             TSCSEEEEESCTTSHHHHHHHHHSSE
T ss_pred             CCCCeEEEECCCCCHHHHHHHhcCCe
Confidence            45679999999999999988877543

>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei}

Probab=95.33  E-value=0.015  Score=45.09  Aligned_cols=37  Identities=30%  Similarity=0.456  Sum_probs=27.6

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+++...    ...-++++|||+|||+|...+.++..+|
T Consensus        24 ~l~~~l~~~----~~~~~~~~vLDiG~G~G~~~~~l~~~~~   60 (276)
T 3mgg_A           24 TLEKLLHHD----TVYPPGAKVLEAGCGIGAQTVILAKNNP   60 (276)
T ss_dssp             HHHHHHHTT----CCCCTTCEEEETTCTTSHHHHHHHHHCT
T ss_pred             HHHHHHhhc----ccCCCCCeEEEecCCCCHHHHHHHHhCC
Confidence            455555542    2345788999999999999999988764

>1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A

Probab=95.30  E-value=0.0092  Score=46.88  Aligned_cols=38  Identities=18%  Similarity=0.085  Sum_probs=27.0

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+.+...    .....+.+|||+|||+|..+..++..+..
T Consensus        17 ~~~~~i~~~----~~~~~~~~VLDiG~G~G~lt~~l~~~~~~   54 (244)
T 1qam_A           17 HNIDKIMTN----IRLNEHDNIFEIGSGKGHFTLELVQRCNF   54 (244)
T ss_dssp             HHHHHHHTT----CCCCTTCEEEEECCTTSHHHHHHHHHSSE
T ss_pred             HHHHHHHHh----CCCCCCCEEEEEeCCchHHHHHHHHcCCe
Confidence            344555542    12346789999999999999998876643

>2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A*

Probab=95.29  E-value=0.0033  Score=48.23  Aligned_cols=26  Identities=15%  Similarity=0.327  Sum_probs=22.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|...+.++..++
T Consensus        54 ~~~~~~vLDlGcG~G~~~~~l~~~~~   79 (265)
T 2i62_A           54 AVKGELLIDIGSGPTIYQLLSACESF   79 (265)
T ss_dssp             SCCEEEEEEESCTTCCGGGTTGGGTE
T ss_pred             ccCCCEEEEECCCccHHHHHHhhccc
Confidence            35778999999999999988887665

>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.29  E-value=0.01  Score=43.87  Aligned_cols=24  Identities=25%  Similarity=0.153  Sum_probs=21.0

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +.+|||+|||+|.....++..+..
T Consensus        42 ~~~vLDiGcG~G~~~~~l~~~~~~   65 (203)
T 3h2b_A           42 DGVILDVGSGTGRWTGHLASLGHQ   65 (203)
T ss_dssp             CSCEEEETCTTCHHHHHHHHTTCC
T ss_pred             CCeEEEecCCCCHHHHHHHhcCCe
Confidence            789999999999999988887554

>3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032}

Probab=95.29  E-value=0.011  Score=42.70  Aligned_cols=25  Identities=28%  Similarity=0.460  Sum_probs=21.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++++|||+|||+|...+.++..+.
T Consensus        45 ~~~~~vLdiG~G~G~~~~~l~~~~~   69 (195)
T 3cgg_A           45 PRGAKILDAGCGQGRIGGYLSKQGH   69 (195)
T ss_dssp             CTTCEEEEETCTTTHHHHHHHHTTC
T ss_pred             cCCCeEEEECCCCCHHHHHHHHCCC
Confidence            3678999999999999998887654

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=95.28  E-value=0.01  Score=45.49  Aligned_cols=24  Identities=21%  Similarity=0.214  Sum_probs=21.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -.+.+|||||||+|..++.++...
T Consensus        73 ~~~~~VLDlGcG~G~~~~~la~~~   96 (230)
T 1fbn_A           73 KRDSKILYLGASAGTTPSHVADIA   96 (230)
T ss_dssp             CTTCEEEEESCCSSHHHHHHHHHT
T ss_pred             CCCCEEEEEcccCCHHHHHHHHHc
Confidence            367899999999999999988874

>3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus}

Probab=95.25  E-value=0.02  Score=49.82  Aligned_cols=26  Identities=19%  Similarity=0.462  Sum_probs=22.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|..++.++..+.
T Consensus       156 ~~~~~~VLDiGcGtG~la~~la~~~~  181 (480)
T 3b3j_A          156 DFKDKIVLDVGCGSGILSFFAAQAGA  181 (480)
T ss_dssp             GTTTCEEEEESCSTTHHHHHHHHTTC
T ss_pred             hcCCCEEEEecCcccHHHHHHHHcCC
Confidence            35789999999999999999998654

>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian}

Probab=95.23  E-value=0.011  Score=44.16  Aligned_cols=24  Identities=17%  Similarity=0.069  Sum_probs=20.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|.....++..+.
T Consensus        45 ~~~~vLDiGcG~G~~~~~l~~~~~   68 (220)
T 3hnr_A           45 SFGNVLEFGVGTGNLTNKLLLAGR   68 (220)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHTTC
T ss_pred             CCCeEEEeCCCCCHHHHHHHhCCC
Confidence            678999999999999988887654

>2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A*

Probab=95.23  E-value=0.0086  Score=47.79  Aligned_cols=25  Identities=12%  Similarity=-0.016  Sum_probs=22.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .|++|||+|||+|..++.+|..++.
T Consensus       125 ~~~~VLDlgcG~G~~~~~la~~~~~  149 (278)
T 2frn_A          125 PDELVVDMFAGIGHLSLPIAVYGKA  149 (278)
T ss_dssp             TTCEEEETTCTTTTTHHHHHHHTCC
T ss_pred             CCCEEEEecccCCHHHHHHHHhCCC
Confidence            4889999999999999999998875

>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes}

Probab=95.19  E-value=0.026  Score=43.55  Aligned_cols=41  Identities=15%  Similarity=0.159  Sum_probs=29.2

Q ss_pred             eechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904           99 MWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus        99 vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      +.++...+.+.+....    ...++.+|||+|||+|...+.++..
T Consensus        42 ~~~~~~~~~~~l~~~~----~~~~~~~vLDiGcG~G~~~~~l~~~   82 (273)
T 3bus_A           42 VDDATDRLTDEMIALL----DVRSGDRVLDVGCGIGKPAVRLATA   82 (273)
T ss_dssp             HHHHHHHHHHHHHHHS----CCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhc----CCCCCCEEEEeCCCCCHHHHHHHHh
Confidence            3445555666666541    2346789999999999999888764

>3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti}

Probab=95.18  E-value=0.012  Score=44.44  Aligned_cols=25  Identities=28%  Similarity=0.486  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|.....++..+.
T Consensus        42 ~~~~~vLdiG~G~G~~~~~l~~~~~   66 (243)
T 3bkw_A           42 VGGLRIVDLGCGFGWFCRWAHEHGA   66 (243)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHTTC
T ss_pred             cCCCEEEEEcCcCCHHHHHHHHCCC
Confidence            4678999999999999998887765

>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A*

Probab=95.14  E-value=0.014  Score=45.31  Aligned_cols=26  Identities=19%  Similarity=0.194  Sum_probs=22.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .-++++|||+|||+|...+.++..+.
T Consensus        44 ~~~~~~vLDiGcG~G~~~~~la~~~~   69 (267)
T 3kkz_A           44 LTEKSLIADIGCGTGGQTMVLAGHVT   69 (267)
T ss_dssp             CCTTCEEEEETCTTCHHHHHHHTTCS
T ss_pred             CCCCCEEEEeCCCCCHHHHHHHhccC
Confidence            34678999999999999999988743

>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*

Probab=95.11  E-value=0.011  Score=47.84  Aligned_cols=27  Identities=19%  Similarity=0.201  Sum_probs=22.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      -.+ +|||+|||+|.....++..+....
T Consensus        46 ~~~-~VLEIG~G~G~lt~~L~~~~~~V~   72 (271)
T 3fut_A           46 FTG-PVFEVGPGLGALTRALLEAGAEVT   72 (271)
T ss_dssp             CCS-CEEEECCTTSHHHHHHHHTTCCEE
T ss_pred             CCC-eEEEEeCchHHHHHHHHHcCCEEE
Confidence            456 999999999999999998875544

>2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A

Probab=95.11  E-value=0.012  Score=44.95  Aligned_cols=25  Identities=20%  Similarity=0.072  Sum_probs=21.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++.+|||+|||+|...+.++..+.
T Consensus        38 ~~~~~vLDiG~G~G~~~~~l~~~~~   62 (263)
T 2yqz_A           38 GEEPVFLELGVGTGRIALPLIARGY   62 (263)
T ss_dssp             SSCCEEEEETCTTSTTHHHHHTTTC
T ss_pred             CCCCEEEEeCCcCCHHHHHHHHCCC
Confidence            4678999999999999998887654

>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41

Probab=95.10  E-value=0.013  Score=45.13  Aligned_cols=26  Identities=12%  Similarity=0.128  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|.....++..++.
T Consensus        36 ~~~~~vLDiGcG~G~~~~~l~~~~~~   61 (260)
T 1vl5_A           36 KGNEEVLDVATGGGHVANAFAPFVKK   61 (260)
T ss_dssp             CSCCEEEEETCTTCHHHHHHGGGSSE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCE
Confidence            36789999999999999988876653

>2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A*

Probab=95.07  E-value=0.012  Score=45.84  Aligned_cols=22  Identities=27%  Similarity=0.128  Sum_probs=19.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++++|||+|||+|...+.++..
T Consensus        81 ~~~~VLDiG~GtG~~t~~la~~  102 (236)
T 2bm8_A           81 RPRTIVELGVYNGGSLAWFRDL  102 (236)
T ss_dssp             CCSEEEEECCTTSHHHHHHHHH
T ss_pred             CCCEEEEEeCCCCHHHHHHHHh
Confidence            5689999999999999998886

>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}

Probab=95.07  E-value=0.0093  Score=48.43  Aligned_cols=26  Identities=23%  Similarity=0.364  Sum_probs=22.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+.+|||+|||+|.....++..++.
T Consensus        41 ~~~~~VLEIG~G~G~lt~~La~~~~~   66 (279)
T 3uzu_A           41 ERGERMVEIGPGLGALTGPVIARLAT   66 (279)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHHCB
T ss_pred             CCcCEEEEEccccHHHHHHHHHhCCC
Confidence            46789999999999999999887654

>1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43

Probab=95.05  E-value=0.013  Score=44.09  Aligned_cols=26  Identities=19%  Similarity=0.305  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++++|||+|||+|...+.++..+..
T Consensus        36 ~~~~~vLdiG~G~G~~~~~l~~~~~~   61 (246)
T 1y8c_A           36 LVFDDYLDLACGTGNLTENLCPKFKN   61 (246)
T ss_dssp             CCTTEEEEETCTTSTTHHHHGGGSSE
T ss_pred             CCCCeEEEeCCCCCHHHHHHHHCCCc
Confidence            36789999999999999988877543

>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}

Probab=95.04  E-value=0.024  Score=43.08  Aligned_cols=43  Identities=30%  Similarity=0.455  Sum_probs=32.0

Q ss_pred             cceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCCh-hHHHHhh-cCCc
Q 031904           95 TGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGL-VGPFGCS-SYPY  146 (150)
Q Consensus        95 tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL-~Gi~aa~-l~~~  146 (150)
                      .|+++|+.   |++||.+.      ...+.+|||+|||.|. ++..++. .+-.
T Consensus        17 ~~~~m~e~---LaeYI~~~------~~~~~rVlEVG~G~g~~vA~~La~~~g~~   61 (153)
T 2k4m_A           17 RGSHMWND---LAVYIIRC------SGPGTRVVEVGAGRFLYVSDYIRKHSKVD   61 (153)
T ss_dssp             CCCHHHHH---HHHHHHHH------SCSSSEEEEETCTTCCHHHHHHHHHSCCE
T ss_pred             chhhHHHH---HHHHHHhc------CCCCCcEEEEccCCChHHHHHHHHhCCCe
Confidence            36677654   89999875      2345699999999996 8888876 5543

>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A

Probab=95.04  E-value=0.025  Score=44.64  Aligned_cols=26  Identities=27%  Similarity=0.459  Sum_probs=22.4

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+|||+|...+.++...+
T Consensus        20 ~~~~~~vLDiGcG~G~~~~~l~~~~~   45 (284)
T 3gu3_A           20 ITKPVHIVDYGCGYGYLGLVLMPLLP   45 (284)
T ss_dssp             CCSCCEEEEETCTTTHHHHHHTTTSC
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHhCC
Confidence            35678999999999999999988754

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=95.04  E-value=0.013  Score=44.27  Aligned_cols=25  Identities=20%  Similarity=0.367  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.+|||+|||+|...+.++....
T Consensus        79 ~~~~~VLdiG~G~G~~~~~la~~~~  103 (227)
T 2pbf_A           79 KPGSRAIDVGSGSGYLTVCMAIKMN  103 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHhc
Confidence            4678999999999999999988753

>3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae}

Probab=95.01  E-value=0.01  Score=44.77  Aligned_cols=25  Identities=8%  Similarity=0.149  Sum_probs=21.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|.....++..++
T Consensus        39 ~~~~~vLdiG~G~G~~~~~l~~~~~   63 (239)
T 3bxo_A           39 PEASSLLDVACGTGTHLEHFTKEFG   63 (239)
T ss_dssp             TTCCEEEEETCTTSHHHHHHHHHHS
T ss_pred             CCCCeEEEecccCCHHHHHHHHhCC
Confidence            4678999999999999998887655

>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei}

Probab=94.99  E-value=0.015  Score=43.88  Aligned_cols=26  Identities=35%  Similarity=0.669  Sum_probs=22.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++.+|||+|||+|.....++...|
T Consensus        42 ~~~~~~vLDiG~G~G~~~~~l~~~~~   67 (234)
T 3dtn_A           42 DTENPDILDLGAGTGLLSAFLMEKYP   67 (234)
T ss_dssp             SCSSCEEEEETCTTSHHHHHHHHHCT
T ss_pred             CCCCCeEEEecCCCCHHHHHHHHhCC
Confidence            34678999999999999999888754

>2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ...

Probab=94.99  E-value=0.008  Score=47.42  Aligned_cols=22  Identities=18%  Similarity=0.516  Sum_probs=18.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhh
Q 031904          121 LHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      .++.+|||||||+|...++++.
T Consensus        70 ~~~~~vLDiGcG~G~~~~l~~~   91 (289)
T 2g72_A           70 VSGRTLIDIGSGPTVYQLLSAC   91 (289)
T ss_dssp             SCCSEEEEETCTTCCGGGTTGG
T ss_pred             CCCCeEEEECCCcChHHHHhhc
Confidence            4788999999999997665554

>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*

Probab=94.96  E-value=0.014  Score=45.75  Aligned_cols=25  Identities=20%  Similarity=0.254  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        78 ~~~~~VLeiG~G~G~~~~~la~~~~  102 (247)
T 1sui_A           78 INAKNTMEIGVYTGYSLLATALAIP  102 (247)
T ss_dssp             TTCCEEEEECCGGGHHHHHHHHHSC
T ss_pred             hCcCEEEEeCCCcCHHHHHHHHhCC
Confidence            4678999999999999999988754

>2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41

Probab=94.92  E-value=0.016  Score=45.04  Aligned_cols=24  Identities=21%  Similarity=0.232  Sum_probs=21.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||+|||+|.....++..+.
T Consensus        54 ~~~~vLDiGcG~G~~~~~l~~~~~   77 (260)
T 2avn_A           54 NPCRVLDLGGGTGKWSLFLQERGF   77 (260)
T ss_dssp             SCCEEEEETCTTCHHHHHHHTTTC
T ss_pred             CCCeEEEeCCCcCHHHHHHHHcCC
Confidence            778999999999999998887654

>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A*

Probab=94.92  E-value=0.029  Score=44.47  Aligned_cols=24  Identities=21%  Similarity=0.412  Sum_probs=20.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .-++.+|||+|||+|...+.++..
T Consensus        70 ~~~~~~vLDiGcG~G~~~~~la~~   93 (302)
T 3hem_A           70 LEPGMTLLDIGCGWGSTMRHAVAE   93 (302)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCcCEEEEeeccCcHHHHHHHHh
Confidence            346789999999999999998876

>1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A*

Probab=94.91  E-value=0.019  Score=43.99  Aligned_cols=39  Identities=18%  Similarity=0.216  Sum_probs=27.2

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ...+..++....    ...++.+|||+|||+|...+.++..++
T Consensus        76 ~~~~~~~~~~~l----~~~~~~~vLdiG~G~G~~~~~la~~~~  114 (235)
T 1jg1_A           76 APHMVAIMLEIA----NLKPGMNILEVGTGSGWNAALISEIVK  114 (235)
T ss_dssp             CHHHHHHHHHHH----TCCTTCCEEEECCTTSHHHHHHHHHHC
T ss_pred             cHHHHHHHHHhc----CCCCCCEEEEEeCCcCHHHHHHHHHhC
Confidence            334444554431    234678999999999999999888763

>2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A*

Probab=94.91  E-value=0.024  Score=46.31  Aligned_cols=37  Identities=27%  Similarity=0.315  Sum_probs=27.1

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++..|.+.+..     ...-+|++|||||||+|.....++..
T Consensus        67 ~a~KL~~i~~~-----~~~~~g~~VLDlGcG~G~~s~~la~~  103 (305)
T 2p41_A           67 GSAKLRWFVER-----NLVTPEGKVVDLGCGRGGWSYYCGGL  103 (305)
T ss_dssp             HHHHHHHHHHT-----TSSCCCEEEEEETCTTSHHHHHHHTS
T ss_pred             HHHHHHHHHHc-----CCCCCCCEEEEEcCCCCHHHHHHHhc
Confidence            45556554443     23345789999999999999998876

>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51

Probab=94.90  E-value=0.015  Score=48.08  Aligned_cols=25  Identities=12%  Similarity=0.057  Sum_probs=22.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||||||+|..++.++..+..
T Consensus       153 ~~~~VLDlgcGtG~~sl~la~~ga~  177 (332)
T 2igt_A          153 RPLKVLNLFGYTGVASLVAAAAGAE  177 (332)
T ss_dssp             SCCEEEEETCTTCHHHHHHHHTTCE
T ss_pred             CCCcEEEcccccCHHHHHHHHcCCE
Confidence            5679999999999999999987663

>3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A*

Probab=94.89  E-value=0.024  Score=46.46  Aligned_cols=29  Identities=17%  Similarity=0.264  Sum_probs=23.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ...+.+|||+|||+|.....++..+.+..
T Consensus        48 ~~~~~~VLEIG~G~G~lT~~La~~~~~V~   76 (295)
T 3gru_A           48 LTKDDVVLEIGLGKGILTEELAKNAKKVY   76 (295)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEE
T ss_pred             CCCcCEEEEECCCchHHHHHHHhcCCEEE
Confidence            34678999999999999999988765443

>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A*

Probab=94.88  E-value=0.029  Score=43.88  Aligned_cols=40  Identities=13%  Similarity=0.087  Sum_probs=27.0

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHh-hcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGC-SSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa-~l~~  145 (150)
                      +...+.+.+...    ....++.+|||+|||+|...+.++ ..+.
T Consensus        48 a~~~~~~~~~~~----~~~~~~~~vLDiGcG~G~~~~~l~~~~~~   88 (287)
T 1kpg_A           48 AQIAKIDLALGK----LGLQPGMTLLDVGCGWGATMMRAVEKYDV   88 (287)
T ss_dssp             HHHHHHHHHHTT----TTCCTTCEEEEETCTTSHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH----cCCCCcCEEEEECCcccHHHHHHHHHcCC
Confidence            344445555543    123467899999999999998887 4443

>1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24

Probab=94.85  E-value=0.024  Score=45.48  Aligned_cols=27  Identities=15%  Similarity=0.055  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .++.+|||+|||+|.....++..+...
T Consensus        27 ~~~~~VLDiG~G~G~lt~~L~~~~~~v   53 (285)
T 1zq9_A           27 RPTDVVLEVGPGTGNMTVKLLEKAKKV   53 (285)
T ss_dssp             CTTCEEEEECCTTSTTHHHHHHHSSEE
T ss_pred             CCCCEEEEEcCcccHHHHHHHhhCCEE
Confidence            467899999999999999998876543

>3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A*

Probab=94.85  E-value=0.015  Score=45.09  Aligned_cols=23  Identities=17%  Similarity=0.057  Sum_probs=19.4

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+.+|||+|||+|...+.++...
T Consensus        24 ~~~~vLDiGCG~G~~~~~la~~~   46 (225)
T 3p2e_A           24 FDRVHIDLGTGDGRNIYKLAIND   46 (225)
T ss_dssp             CSEEEEEETCTTSHHHHHHHHTC
T ss_pred             CCCEEEEEeccCcHHHHHHHHhC
Confidence            56799999999999999888543

>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}

Probab=94.82  E-value=0.015  Score=43.53  Aligned_cols=25  Identities=16%  Similarity=0.155  Sum_probs=21.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        55 ~~~~~vLdiG~G~G~~~~~la~~~~   79 (210)
T 3c3p_A           55 KQPQLVVVPGDGLGCASWWFARAIS   79 (210)
T ss_dssp             HCCSEEEEESCGGGHHHHHHHTTSC
T ss_pred             hCCCEEEEEcCCccHHHHHHHHhCC
Confidence            3568999999999999999988654

>3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A*

Probab=94.82  E-value=0.03  Score=44.30  Aligned_cols=27  Identities=15%  Similarity=-0.124  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..+.+|||||||+|...+.++..+...
T Consensus        81 ~~~~~vLDlGcG~G~~~~~l~~~~~~v  107 (299)
T 3g2m_A           81 PVSGPVLELAAGMGRLTFPFLDLGWEV  107 (299)
T ss_dssp             CCCSCEEEETCTTTTTHHHHHTTTCCE
T ss_pred             CCCCcEEEEeccCCHHHHHHHHcCCeE
Confidence            345699999999999999998876443

>3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii}

Probab=94.81  E-value=0.012  Score=46.84  Aligned_cols=26  Identities=12%  Similarity=-0.003  Sum_probs=22.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .-++++|||||||+|..++.+|..++
T Consensus       117 ~~~~~~VLDlgcG~G~~s~~la~~~~  142 (272)
T 3a27_A          117 SNENEVVVDMFAGIGYFTIPLAKYSK  142 (272)
T ss_dssp             CCTTCEEEETTCTTTTTHHHHHHHTC
T ss_pred             cCCCCEEEEecCcCCHHHHHHHHhCC
Confidence            34678999999999999999998865

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=94.76  E-value=0.019  Score=44.08  Aligned_cols=25  Identities=28%  Similarity=0.373  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|...+.++...+
T Consensus        59 ~~~~~VLdiG~G~G~~~~~la~~~~   83 (239)
T 2hnk_A           59 SGAKRIIEIGTFTGYSSLCFASALP   83 (239)
T ss_dssp             HTCSEEEEECCTTCHHHHHHHHHSC
T ss_pred             hCcCEEEEEeCCCCHHHHHHHHhCC
Confidence            4678999999999999999988753

>3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens}

Probab=94.76  E-value=0.018  Score=45.05  Aligned_cols=25  Identities=16%  Similarity=0.200  Sum_probs=21.2

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++.+|||+|||+|...+.+|...|.
T Consensus        46 ~~~~vLDiGcG~G~~~~~la~~~p~   70 (235)
T 3ckk_A           46 AQVEFADIGCGYGGLLVELSPLFPD   70 (235)
T ss_dssp             CCEEEEEETCTTCHHHHHHGGGSTT
T ss_pred             CCCeEEEEccCCcHHHHHHHHHCCC
Confidence            4568999999999999999887653

>1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24

Probab=94.75  E-value=0.0086  Score=46.67  Aligned_cols=26  Identities=15%  Similarity=0.137  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+.+|||+|||+|...+.++..+..
T Consensus        28 ~~~~~VLDiG~G~G~~~~~l~~~~~~   53 (245)
T 1yub_A           28 KETDTVYEIGTGKGHLTTKLAKISKQ   53 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSE
T ss_pred             CCCCEEEEEeCCCCHHHHHHHHhCCe
Confidence            46779999999999999998876643

>2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae}

Probab=94.75  E-value=0.014  Score=46.73  Aligned_cols=27  Identities=11%  Similarity=-0.165  Sum_probs=23.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      .+.+|||+|||+|..++.+|..+..+.
T Consensus        83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~  109 (258)
T 2r6z_A           83 AHPTVWDATAGLGRDSFVLASLGLTVT  109 (258)
T ss_dssp             GCCCEEETTCTTCHHHHHHHHTTCCEE
T ss_pred             CcCeEEEeeCccCHHHHHHHHhCCEEE
Confidence            568999999999999999998765543

>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}

Probab=94.73  E-value=0.02  Score=44.07  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        71 ~~~~~vLdiG~G~G~~~~~la~~~~   95 (232)
T 3cbg_A           71 TGAKQVLEIGVFRGYSALAMALQLP   95 (232)
T ss_dssp             HTCCEEEEECCTTSHHHHHHHTTSC
T ss_pred             cCCCEEEEecCCCCHHHHHHHHhCC
Confidence            4678999999999999999988654

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=94.73  E-value=0.019  Score=43.68  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|...+.++...+
T Consensus        53 ~~~~~vLdiG~G~G~~~~~la~~~~   77 (233)
T 2gpy_A           53 AAPARILEIGTAIGYSAIRMAQALP   77 (233)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHHHCT
T ss_pred             cCCCEEEEecCCCcHHHHHHHHHCC
Confidence            4678999999999999999988754

>1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1

Probab=94.68  E-value=0.031  Score=45.18  Aligned_cols=26  Identities=19%  Similarity=0.312  Sum_probs=22.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|..++.++..++.
T Consensus        74 ~~~~~VLDiGcG~G~~~~~la~~~~~   99 (317)
T 1dl5_A           74 DKGMRVLEIGGGTGYNAAVMSRVVGE   99 (317)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             CCcCEEEEecCCchHHHHHHHHhcCC
Confidence            46789999999999999999887653

>2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54

Probab=94.68  E-value=0.019  Score=44.24  Aligned_cols=22  Identities=14%  Similarity=0.362  Sum_probs=19.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++++|||||||+|..++.++..
T Consensus        65 ~~~~vLDlG~G~G~~~~~la~~   86 (254)
T 2h00_A           65 TLRRGIDIGTGASCIYPLLGAT   86 (254)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHH
T ss_pred             CCCEEEEeCCChhHHHHHHHHh
Confidence            5789999999999988877764

>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42

Probab=94.65  E-value=0.017  Score=44.10  Aligned_cols=23  Identities=13%  Similarity=0.078  Sum_probs=19.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++++|||+|||+|..++.++..+
T Consensus        79 ~~~~vLDiGcG~G~~~~~l~~~~  101 (241)
T 2ex4_A           79 GTSCALDCGAGIGRITKRLLLPL  101 (241)
T ss_dssp             CCSEEEEETCTTTHHHHHTTTTT
T ss_pred             CCCEEEEECCCCCHHHHHHHHhc
Confidence            57899999999999998877654

>3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15}

Probab=94.63  E-value=0.031  Score=42.15  Aligned_cols=22  Identities=27%  Similarity=0.519  Sum_probs=18.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .+++|||+|||+|...+.++..
T Consensus        33 ~~~~vLdiG~G~G~~~~~l~~~   54 (243)
T 3d2l_A           33 PGKRIADIGCGTGTATLLLADH   54 (243)
T ss_dssp             TTCEEEEESCTTCHHHHHHTTT
T ss_pred             CCCeEEEecCCCCHHHHHHhhC
Confidence            4689999999999998887765

>1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A

Probab=94.58  E-value=0.021  Score=43.17  Aligned_cols=23  Identities=22%  Similarity=0.290  Sum_probs=20.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..+.+|||+|||+|..++.++..
T Consensus        72 ~~~~~vLDlG~G~G~~~~~la~~   94 (227)
T 1g8a_A           72 KPGKSVLYLGIASGTTASHVSDI   94 (227)
T ss_dssp             CTTCEEEEETTTSTTHHHHHHHH
T ss_pred             CCCCEEEEEeccCCHHHHHHHHH
Confidence            46789999999999999988865

>2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A

Probab=94.58  E-value=0.019  Score=42.41  Aligned_cols=23  Identities=35%  Similarity=0.259  Sum_probs=19.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+ +|||+|||+|...+.++..+.
T Consensus        30 ~~-~vLdiGcG~G~~~~~l~~~~~   52 (202)
T 2kw5_A           30 QG-KILCLAEGEGRNACFLASLGY   52 (202)
T ss_dssp             SS-EEEECCCSCTHHHHHHHTTTC
T ss_pred             CC-CEEEECCCCCHhHHHHHhCCC
Confidence            45 999999999999998887654

>1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A*

Probab=94.55  E-value=0.022  Score=44.28  Aligned_cols=25  Identities=20%  Similarity=0.061  Sum_probs=21.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.+|||+|||+|...+.++..+.
T Consensus        63 ~~~~~vLDiGcG~G~~~~~l~~~~~   87 (298)
T 1ri5_A           63 KRGDSVLDLGCGKGGDLLKYERAGI   87 (298)
T ss_dssp             CTTCEEEEETCTTTTTHHHHHHHTC
T ss_pred             CCCCeEEEECCCCCHHHHHHHHCCC
Confidence            4678999999999988888877654

>2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str}

Probab=94.54  E-value=0.02  Score=43.68  Aligned_cols=24  Identities=21%  Similarity=0.151  Sum_probs=20.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++.+|||+|||+|...+.++...
T Consensus        32 ~~~~~vLdiG~G~G~~~~~l~~~~   55 (259)
T 2p35_A           32 ERVLNGYDLGCGPGNSTELLTDRY   55 (259)
T ss_dssp             SCCSSEEEETCTTTHHHHHHHHHH
T ss_pred             CCCCEEEEecCcCCHHHHHHHHhC
Confidence            467899999999999999888763

>2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum}

Probab=94.51  E-value=0.018  Score=46.63  Aligned_cols=27  Identities=15%  Similarity=0.068  Sum_probs=22.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..+.+|||+|||+|...+.++..+...
T Consensus        41 ~~~~~VLDiG~G~G~lt~~La~~~~~v   67 (299)
T 2h1r_A           41 KSSDIVLEIGCGTGNLTVKLLPLAKKV   67 (299)
T ss_dssp             CTTCEEEEECCTTSTTHHHHTTTSSEE
T ss_pred             CCcCEEEEEcCcCcHHHHHHHhcCCEE
Confidence            467899999999999999988765443

>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}

Probab=94.48  E-value=0.015  Score=44.90  Aligned_cols=22  Identities=18%  Similarity=0.357  Sum_probs=19.0

Q ss_pred             CCeEEEeCCCCChhHHHHhhcC
Q 031904          123 GKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      +.+|||+|||+|..++.++...
T Consensus        57 ~~~vLdiG~G~G~~~~~la~~~   78 (221)
T 3dr5_A           57 STGAIAITPAAGLVGLYILNGL   78 (221)
T ss_dssp             CCEEEEESTTHHHHHHHHHHHS
T ss_pred             CCCEEEEcCCchHHHHHHHHhC
Confidence            3499999999999999998853

>1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31

Probab=94.48  E-value=0.03  Score=48.46  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -.+.+|||||||+|...+.+|...
T Consensus       241 ~~g~~VLDLGCGsG~la~~LA~~~  264 (433)
T 1u2z_A          241 KKGDTFMDLGSGVGNCVVQAALEC  264 (433)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCcCHHHHHHHHHC
Confidence            467899999999999999999864

>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}

Probab=94.44  E-value=0.028  Score=43.53  Aligned_cols=25  Identities=28%  Similarity=0.335  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||+|||+|..++.++...+
T Consensus        69 ~~~~~VLeiG~G~G~~~~~la~~~~   93 (237)
T 3c3y_A           69 VNAKKTIEVGVFTGYSLLLTALSIP   93 (237)
T ss_dssp             TTCCEEEEECCTTSHHHHHHHHHSC
T ss_pred             hCCCEEEEeCCCCCHHHHHHHHhCC
Confidence            4678999999999999999988644

>2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens}

Probab=94.41  E-value=0.024  Score=43.26  Aligned_cols=23  Identities=22%  Similarity=0.270  Sum_probs=20.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..+.+|||+|||+|..++.++..
T Consensus        76 ~~~~~vLDlG~G~G~~~~~la~~   98 (233)
T 2ipx_A           76 KPGAKVLYLGAASGTTVSHVSDI   98 (233)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEEcccCCHHHHHHHHH
Confidence            35789999999999999988876

>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A*

Probab=94.41  E-value=0.043  Score=43.66  Aligned_cols=24  Identities=21%  Similarity=0.372  Sum_probs=20.4

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..++++|||+|||+|...+.++..
T Consensus        88 ~~~~~~vLDiGcG~G~~~~~la~~  111 (318)
T 2fk8_A           88 LKPGMTLLDIGCGWGTTMRRAVER  111 (318)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCcCEEEEEcccchHHHHHHHHH
Confidence            346789999999999999888865

>3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B*

Probab=94.37  E-value=0.023  Score=45.09  Aligned_cols=24  Identities=25%  Similarity=0.347  Sum_probs=21.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++.+|||+|||+|..+..++..+
T Consensus        30 ~~~~~VLDiG~G~G~lt~~L~~~~   53 (249)
T 3ftd_A           30 EEGNTVVEVGGGTGNLTKVLLQHP   53 (249)
T ss_dssp             CTTCEEEEEESCHHHHHHHHTTSC
T ss_pred             CCcCEEEEEcCchHHHHHHHHHcC
Confidence            467899999999999999988874

>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis}

Probab=94.33  E-value=0.034  Score=40.89  Aligned_cols=22  Identities=18%  Similarity=0.276  Sum_probs=18.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++.+|||+|||+|...+.++..
T Consensus        43 ~~~~vLdiG~G~G~~~~~l~~~   64 (219)
T 3dlc_A           43 TAGTCIDIGSGPGALSIALAKQ   64 (219)
T ss_dssp             CEEEEEEETCTTSHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHc
Confidence            3349999999999999988876

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=94.31  E-value=0.024  Score=43.03  Aligned_cols=23  Identities=22%  Similarity=0.379  Sum_probs=20.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..+++|||+|||+|..++.++..
T Consensus        90 ~~~~~vldiG~G~G~~~~~l~~~  112 (248)
T 2yvl_A           90 NKEKRVLEFGTGSGALLAVLSEV  112 (248)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCccHHHHHHHHh
Confidence            46789999999999999988876

>4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus}

Probab=94.30  E-value=0.024  Score=48.09  Aligned_cols=26  Identities=15%  Similarity=0.190  Sum_probs=23.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      +|++||+||||||..++.+|..++..
T Consensus       214 ~g~~VLDlg~GtG~~sl~~a~~ga~V  239 (393)
T 4dmg_A          214 PGERVLDVYSYVGGFALRAARKGAYA  239 (393)
T ss_dssp             TTCEEEEESCTTTHHHHHHHHTTCEE
T ss_pred             CCCeEEEcccchhHHHHHHHHcCCeE
Confidence            38999999999999999999887653

>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei}

Probab=94.28  E-value=0.026  Score=43.63  Aligned_cols=24  Identities=29%  Similarity=0.443  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++++|||+|||+|...+.++..+
T Consensus        42 ~~~~~vLDiGcG~G~~~~~l~~~~   65 (275)
T 3bkx_A           42 KPGEKILEIGCGQGDLSAVLADQV   65 (275)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh
Confidence            467899999999999999888763

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=94.27  E-value=0.03  Score=43.03  Aligned_cols=24  Identities=33%  Similarity=0.439  Sum_probs=21.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..++++|||+|||+|...+.++..
T Consensus        91 ~~~~~~vldiG~G~G~~~~~l~~~  114 (255)
T 3mb5_A           91 ISPGDFIVEAGVGSGALTLFLANI  114 (255)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEecCCchHHHHHHHHH
Confidence            346889999999999999999887

>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42

Probab=94.26  E-value=0.018  Score=43.81  Aligned_cols=24  Identities=13%  Similarity=0.171  Sum_probs=20.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++.+|||+|||+|...+.++..+
T Consensus        92 ~~~~~vLDiG~G~G~~~~~l~~~~  115 (254)
T 1xtp_A           92 HGTSRALDCGAGIGRITKNLLTKL  115 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTHHHH
T ss_pred             cCCCEEEEECCCcCHHHHHHHHhh
Confidence            357899999999999998777654

>1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A*

Probab=94.24  E-value=0.037  Score=44.44  Aligned_cols=37  Identities=16%  Similarity=0.172  Sum_probs=26.7

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      +-.|.+++.+..    ...++++|||+|||+|..++.++..
T Consensus       108 te~lv~~~l~~~----~~~~~~~vLDlG~GsG~~~~~la~~  144 (284)
T 1nv8_A          108 TEELVELALELI----RKYGIKTVADIGTGSGAIGVSVAKF  144 (284)
T ss_dssp             HHHHHHHHHHHH----HHHTCCEEEEESCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHh----cccCCCEEEEEeCchhHHHHHHHHC
Confidence            445556655432    1125679999999999999999987

>2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A*

Probab=94.23  E-value=0.058  Score=42.37  Aligned_cols=39  Identities=21%  Similarity=0.198  Sum_probs=28.4

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+-.+.+++....   +  .++.+|||+|||+|..++.++...+
T Consensus        94 ~te~l~~~~l~~~---~--~~~~~vLDlG~GsG~~~~~la~~~~  132 (276)
T 2b3t_A           94 DTECLVEQALARL---P--EQPCRILDLGTGTGAIALALASERP  132 (276)
T ss_dssp             THHHHHHHHHHHS---C--SSCCEEEEETCTTSHHHHHHHHHCT
T ss_pred             hHHHHHHHHHHhc---c--cCCCEEEEecCCccHHHHHHHHhCC
Confidence            4555666666531   1  4567999999999999999986543

>3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis}

Probab=94.19  E-value=0.028  Score=48.38  Aligned_cols=26  Identities=27%  Similarity=0.225  Sum_probs=22.7

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      |++|||||||+|..++.+|..+..+.
T Consensus        94 g~~VLDLgcG~G~~al~LA~~g~~V~  119 (410)
T 3ll7_A           94 GTKVVDLTGGLGIDFIALMSKASQGI  119 (410)
T ss_dssp             TCEEEESSCSSSHHHHHHHTTCSEEE
T ss_pred             CCEEEEeCCCchHHHHHHHhcCCEEE
Confidence            89999999999999999998775543

>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413}

Probab=94.18  E-value=0.028  Score=43.94  Aligned_cols=24  Identities=29%  Similarity=0.326  Sum_probs=20.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++.+|||+|||+|.....++..+
T Consensus        56 ~~~~~vLDiGcG~G~~~~~l~~~~   79 (279)
T 3ccf_A           56 QPGEFILDLGCGTGQLTEKIAQSG   79 (279)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHTT
T ss_pred             CCCCEEEEecCCCCHHHHHHHhCC
Confidence            357899999999999998888743

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=94.16  E-value=0.05  Score=41.50  Aligned_cols=24  Identities=29%  Similarity=0.505  Sum_probs=21.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..++.+|||+|||+|...+.++..
T Consensus        94 ~~~~~~vLdiG~G~G~~~~~l~~~  117 (258)
T 2pwy_A           94 LAPGMRVLEAGTGSGGLTLFLARA  117 (258)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEECCCcCHHHHHHHHH
Confidence            346789999999999999988886

>3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus}

Probab=94.13  E-value=0.031  Score=41.48  Aligned_cols=24  Identities=17%  Similarity=0.250  Sum_probs=20.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++++|||+|||+|.....++..+
T Consensus        31 ~~~~~vLdiG~G~G~~~~~l~~~~   54 (230)
T 3cc8_A           31 KEWKEVLDIGCSSGALGAAIKENG   54 (230)
T ss_dssp             TTCSEEEEETCTTSHHHHHHHTTT
T ss_pred             cCCCcEEEeCCCCCHHHHHHHhcC
Confidence            467899999999999998888764

>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A*

Probab=94.10  E-value=0.029  Score=44.86  Aligned_cols=24  Identities=17%  Similarity=0.129  Sum_probs=20.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .-.+++|||+|||+|...+.++..
T Consensus       115 ~~~~~~vLDiGcG~G~~~~~la~~  138 (312)
T 3vc1_A          115 AGPDDTLVDAGCGRGGSMVMAHRR  138 (312)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEecCCCCHHHHHHHHH
Confidence            345789999999999999988875

>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus}

Probab=94.09  E-value=0.025  Score=42.11  Aligned_cols=24  Identities=21%  Similarity=0.519  Sum_probs=21.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .++++|||+|||+|...+.++..+
T Consensus        36 ~~~~~vLDiG~G~G~~~~~l~~~~   59 (219)
T 3dh0_A           36 KEGMTVLDVGTGAGFYLPYLSKMV   59 (219)
T ss_dssp             CTTCEEEESSCTTCTTHHHHHHHH
T ss_pred             CCCCEEEEEecCCCHHHHHHHHHh
Confidence            457899999999999999888775

>2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A*

Probab=94.09  E-value=0.029  Score=47.11  Aligned_cols=25  Identities=16%  Similarity=0.032  Sum_probs=22.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||||||+|..++.+|..+.
T Consensus       211 ~~~~~VLDl~cGtG~~sl~la~~ga  235 (385)
T 2b78_A          211 AAGKTVLNLFSYTAAFSVAAAMGGA  235 (385)
T ss_dssp             TBTCEEEEETCTTTHHHHHHHHTTB
T ss_pred             cCCCeEEEEeeccCHHHHHHHHCCC
Confidence            5788999999999999999998664

>3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12}

Probab=93.95  E-value=0.036  Score=46.32  Aligned_cols=25  Identities=12%  Similarity=-0.072  Sum_probs=22.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++++|||||||+|..++.++..+.
T Consensus       219 ~~~~~VLDl~cG~G~~sl~la~~g~  243 (396)
T 3c0k_A          219 VENKRVLNCFSYTGGFAVSALMGGC  243 (396)
T ss_dssp             CTTCEEEEESCTTCSHHHHHHHTTC
T ss_pred             hCCCeEEEeeccCCHHHHHHHHCCC
Confidence            4788999999999999999998764

>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18

Probab=93.94  E-value=0.058  Score=42.30  Aligned_cols=23  Identities=26%  Similarity=0.335  Sum_probs=20.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .++.+|||+|||+|...+.++..
T Consensus        81 ~~~~~vLDiGcG~G~~~~~l~~~  103 (297)
T 2o57_A           81 QRQAKGLDLGAGYGGAARFLVRK  103 (297)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHH
Confidence            46789999999999999888775

>3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae}

Probab=93.94  E-value=0.032  Score=44.17  Aligned_cols=22  Identities=23%  Similarity=0.277  Sum_probs=19.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++++|||+|||+|...+.++..
T Consensus        36 ~~~~vLDiGcG~G~~~~~la~~   57 (299)
T 3g5t_A           36 ERKLLVDVGCGPGTATLQMAQE   57 (299)
T ss_dssp             CCSEEEEETCTTTHHHHHHHHH
T ss_pred             CCCEEEEECCCCCHHHHHHHHh
Confidence            6789999999999999988853

>3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A*

Probab=93.92  E-value=0.025  Score=46.12  Aligned_cols=26  Identities=12%  Similarity=-0.042  Sum_probs=23.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -+|++||++|||+|..+|.+|+.+..
T Consensus       124 ~~g~~VlD~~aG~G~~~i~~a~~g~~  149 (278)
T 3k6r_A          124 KPDELVVDMFAGIGHLSLPIAVYGKA  149 (278)
T ss_dssp             CTTCEEEETTCTTTTTTHHHHHHTCC
T ss_pred             CCCCEEEEecCcCcHHHHHHHHhcCC
Confidence            46899999999999999999998753

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=93.84  E-value=0.035  Score=41.80  Aligned_cols=23  Identities=26%  Similarity=0.468  Sum_probs=20.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      -++.+|||+|||+|...+.++..
T Consensus        76 ~~~~~vLDiG~G~G~~~~~la~~   98 (226)
T 1i1n_A           76 HEGAKALDVGSGSGILTACFARM   98 (226)
T ss_dssp             CTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCCEEEEEcCCcCHHHHHHHHH
Confidence            46789999999999999988876

>3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A*

Probab=93.78  E-value=0.23  Score=41.21  Aligned_cols=37  Identities=11%  Similarity=0.018  Sum_probs=28.2

Q ss_pred             HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++..|...    . ...+.+|||+|||+|...+.++..++
T Consensus       204 ~~la~~l~~~----~-~~~~~~vLD~gCGsG~~~i~~a~~~~  240 (373)
T 3tm4_A          204 ASIANAMIEL----A-ELDGGSVLDPMCGSGTILIELALRRY  240 (373)
T ss_dssp             HHHHHHHHHH----H-TCCSCCEEETTCTTCHHHHHHHHTTC
T ss_pred             HHHHHHHHHh----h-cCCCCEEEEccCcCcHHHHHHHHhCC
Confidence            3455555543    2 34678999999999999999999876

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=93.77  E-value=0.041  Score=43.19  Aligned_cols=24  Identities=21%  Similarity=0.461  Sum_probs=21.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..++.+|||+|||+|..++.++..
T Consensus       110 ~~~~~~VLDiG~G~G~~~~~la~~  133 (277)
T 1o54_A          110 VKEGDRIIDTGVGSGAMCAVLARA  133 (277)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEECCcCCHHHHHHHHH
Confidence            346789999999999999999886

>1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A

Probab=93.69  E-value=0.051  Score=41.92  Aligned_cols=22  Identities=9%  Similarity=-0.082  Sum_probs=19.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .+.+|||+|||+|..++.++..
T Consensus        51 ~~~~vLD~gcGsG~~~~~la~~   72 (250)
T 1o9g_A           51 GPVTLWDPCCGSGYLLTVLGLL   72 (250)
T ss_dssp             SCEEEEETTCTTSHHHHHHHHH
T ss_pred             CCCeEEECCCCCCHHHHHHHHH
Confidence            5679999999999999988875

>2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13

Probab=93.67  E-value=0.041  Score=44.54  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=22.4

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc-CC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS-YP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l-~~  145 (150)
                      ..++++|||+|||+|..++.++.. ++
T Consensus       103 ~~~g~~VLDiG~G~G~~~~~la~~~g~  129 (336)
T 2b25_A          103 INPGDTVLEAGSGSGGMSLFLSKAVGS  129 (336)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             CCCCCEEEEeCCCcCHHHHHHHHHhCC
Confidence            357889999999999999999886 54

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=93.44  E-value=0.046  Score=41.47  Aligned_cols=23  Identities=26%  Similarity=0.443  Sum_probs=19.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      -++.+|||+|||+|...+.++..
T Consensus        83 ~~~~~VLdiG~G~G~~~~~la~~  105 (227)
T 1r18_A           83 KPGARILDVGSGSGYLTACFYRY  105 (227)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCEEEEECCCccHHHHHHHHh
Confidence            45789999999999999888874

>1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A*

Probab=93.34  E-value=0.074  Score=45.18  Aligned_cols=40  Identities=8%  Similarity=-0.098  Sum_probs=28.1

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +-.|.+++....    ....+.+|||||||+|..++.+|..+..
T Consensus       271 ~e~l~~~~~~~l----~~~~~~~VLDlgcG~G~~~~~la~~~~~  310 (433)
T 1uwv_A          271 NQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQAAS  310 (433)
T ss_dssp             HHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTTSSE
T ss_pred             HHHHHHHHHHhh----cCCCCCEEEECCCCCCHHHHHHHhhCCE
Confidence            444555555432    1245689999999999999999987443

>2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum}

Probab=93.30  E-value=0.056  Score=39.82  Aligned_cols=24  Identities=17%  Similarity=0.111  Sum_probs=17.1

Q ss_pred             cCCCeEEEeCCCCChhHH-HHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGP-FGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi-~aa~l~  144 (150)
                      .++++|||+|||+|...+ .++..+
T Consensus        22 ~~~~~vLDiGcG~G~~~~~~~~~~~   46 (209)
T 2p8j_A           22 NLDKTVLDCGAGGDLPPLSIFVEDG   46 (209)
T ss_dssp             SSCSEEEEESCCSSSCTHHHHHHTT
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhCC
Confidence            457899999999998743 334433

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=93.29  E-value=0.056  Score=44.73  Aligned_cols=23  Identities=26%  Similarity=0.306  Sum_probs=18.8

Q ss_pred             cCCCeEEEeCCCCC-hhHHHHhhc
Q 031904          121 LHGKKIVELGSGCG-LVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtG-L~Gi~aa~l  143 (150)
                      -++++|||+|||+| +.++.+|+.
T Consensus       121 ~~g~rVLDIGcG~G~~ta~~lA~~  144 (298)
T 3fpf_A          121 RRGERAVFIGGGPLPLTGILLSHV  144 (298)
T ss_dssp             CTTCEEEEECCCSSCHHHHHHHHT
T ss_pred             CCcCEEEEECCCccHHHHHHHHHc
Confidence            46899999999985 777877764

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=93.27  E-value=0.048  Score=42.41  Aligned_cols=24  Identities=21%  Similarity=0.422  Sum_probs=20.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ...+.+|||+|||+|...+.++..
T Consensus        97 ~~~~~~vLdiG~G~G~~~~~l~~~  120 (280)
T 1i9g_A           97 IFPGARVLEAGAGSGALTLSLLRA  120 (280)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEEcccccHHHHHHHHH
Confidence            346789999999999999988874

>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A

Probab=93.23  E-value=0.05  Score=45.14  Aligned_cols=25  Identities=24%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..++++|||||||+|...+.++...
T Consensus        81 ~~~~~~VLDlGcG~G~~~~~la~~~  105 (383)
T 4fsd_A           81 SLEGATVLDLGCGTGRDVYLASKLV  105 (383)
T ss_dssp             GGTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEEecCccCHHHHHHHHHh
Confidence            4578999999999999998888763

>1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13

Probab=93.18  E-value=0.05  Score=42.82  Aligned_cols=23  Identities=26%  Similarity=0.439  Sum_probs=20.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..+.+|||+|||+|..++.++..
T Consensus       109 ~~~~~VLD~G~G~G~~~~~la~~  131 (275)
T 1yb2_A          109 RPGMDILEVGVGSGNMSSYILYA  131 (275)
T ss_dssp             CTTCEEEEECCTTSHHHHHHHHH
T ss_pred             CCcCEEEEecCCCCHHHHHHHHH
Confidence            46789999999999999988876

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=93.11  E-value=0.052  Score=41.94  Aligned_cols=24  Identities=13%  Similarity=0.216  Sum_probs=20.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -++.+|||+|||+|.....++...
T Consensus        84 ~~~~~vLdiG~G~G~~~~~l~~~~  107 (269)
T 1p91_A           84 DKATAVLDIGCGEGYYTHAFADAL  107 (269)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTC
T ss_pred             CCCCEEEEECCCCCHHHHHHHHhC
Confidence            357899999999999998888763

>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli}

Probab=93.08  E-value=0.025  Score=46.34  Aligned_cols=25  Identities=20%  Similarity=0.386  Sum_probs=21.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||||||+|..++.++..++.
T Consensus       196 ~~~~VLDlGcG~G~~~~~la~~~~~  220 (343)
T 2pjd_A          196 TKGKVLDVGCGAGVLSVAFARHSPK  220 (343)
T ss_dssp             CCSBCCBTTCTTSHHHHHHHHHCTT
T ss_pred             CCCeEEEecCccCHHHHHHHHHCCC
Confidence            3679999999999999999988764

>2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A*

Probab=92.96  E-value=0.054  Score=46.32  Aligned_cols=27  Identities=26%  Similarity=0.354  Sum_probs=22.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..+++|||||||+|..++.+|..+...
T Consensus       289 ~~~~~VLDlgcG~G~~sl~la~~~~~V  315 (425)
T 2jjq_A          289 VEGEKILDMYSGVGTFGIYLAKRGFNV  315 (425)
T ss_dssp             CCSSEEEEETCTTTHHHHHHHHTTCEE
T ss_pred             CCCCEEEEeeccchHHHHHHHHcCCEE
Confidence            457899999999999999999876543

>3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E*

Probab=92.94  E-value=0.044  Score=43.43  Aligned_cols=24  Identities=21%  Similarity=0.310  Sum_probs=19.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .-+|.+|||||||+|.....+|.+
T Consensus        74 l~~g~~VLDlG~GtG~~t~~la~~   97 (232)
T 3id6_C           74 IRKGTKVLYLGAASGTTISHVSDI   97 (232)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCCCEEEEEeecCCHHHHHHHHH
Confidence            346899999999999988777764

>2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51

Probab=92.85  E-value=0.057  Score=45.01  Aligned_cols=24  Identities=8%  Similarity=0.094  Sum_probs=21.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||||||+|..++.++..+.
T Consensus       217 ~~~~VLDl~~G~G~~~~~la~~g~  240 (396)
T 2as0_A          217 PGDRVLDVFTYTGGFAIHAAIAGA  240 (396)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTC
T ss_pred             CCCeEEEecCCCCHHHHHHHHCCC
Confidence            788999999999999999998754

>2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A*

Probab=92.80  E-value=0.11  Score=42.81  Aligned_cols=36  Identities=11%  Similarity=0.013  Sum_probs=26.6

Q ss_pred             HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..+++++.+..    ...++.+|||+|||+|...+.++..
T Consensus        25 ~~l~~~~~~~~----~~~~~~~vLD~gcGtG~~~~~~~~~   60 (421)
T 2ih2_A           25 PEVVDFMVSLA----EAPRGGRVLEPACAHGPFLRAFREA   60 (421)
T ss_dssp             HHHHHHHHHHC----CCCTTCEEEEETCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHhh----ccCCCCEEEECCCCChHHHHHHHHH
Confidence            45677777642    1134679999999999999988864

>4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix}

Probab=92.76  E-value=0.12  Score=41.12  Aligned_cols=51  Identities=18%  Similarity=0.201  Sum_probs=33.6

Q ss_pred             cceeeechHH-HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc-CCc
Q 031904           95 TGSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS-YPY  146 (150)
Q Consensus        95 tG~~vW~asi-~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l-~~~  146 (150)
                      ..+..|+--. -||.-|..... .-..-+|.+|||||||+|.....+|.. |+.
T Consensus        50 ~e~r~w~p~rsklaa~i~~gl~-~l~ikpG~~VldlG~G~G~~~~~la~~VG~~  102 (233)
T 4df3_A           50 EEYREWNAYRSKLAAALLKGLI-ELPVKEGDRILYLGIASGTTASHMSDIIGPR  102 (233)
T ss_dssp             EEEEECCTTTCHHHHHHHTTCS-CCCCCTTCEEEEETCTTSHHHHHHHHHHCTT
T ss_pred             ceeeeECCCchHHHHHHHhchh-hcCCCCCCEEEEecCcCCHHHHHHHHHhCCC
Confidence            4789998632 34444444211 112457899999999999888888864 553

>3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A*

Probab=92.74  E-value=0.068  Score=48.58  Aligned_cols=26  Identities=19%  Similarity=0.027  Sum_probs=23.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+|++||+||||||..++.++..+..
T Consensus       538 ~~g~~VLDlg~GtG~~sl~aa~~ga~  563 (703)
T 3v97_A          538 SKGKDFLNLFSYTGSATVHAGLGGAR  563 (703)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHTTCS
T ss_pred             cCCCcEEEeeechhHHHHHHHHCCCC
Confidence            47899999999999999999987765

>3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A*

Probab=92.62  E-value=0.097  Score=41.64  Aligned_cols=22  Identities=18%  Similarity=0.060  Sum_probs=18.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++.+|||+|||+|.....++..
T Consensus        34 ~~~~VLDlGcG~G~~~~~l~~~   55 (313)
T 3bgv_A           34 RDITVLDLGCGKGGDLLKWKKG   55 (313)
T ss_dssp             -CCEEEEETCTTTTTHHHHHHT
T ss_pred             CCCEEEEECCCCcHHHHHHHhc
Confidence            6789999999999988877753

>4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A*

Probab=92.61  E-value=0.11  Score=43.07  Aligned_cols=26  Identities=19%  Similarity=-0.014  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -++.+|||+|||+|.....++..+..
T Consensus       106 ~~~~~VLDiGcG~G~~~~~l~~~g~~  131 (416)
T 4e2x_A          106 GPDPFIVEIGCNDGIMLRTIQEAGVR  131 (416)
T ss_dssp             SSSCEEEEETCTTTTTHHHHHHTTCE
T ss_pred             CCCCEEEEecCCCCHHHHHHHHcCCc
Confidence            36789999999999999888876543

>1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41

Probab=92.58  E-value=0.055  Score=40.72  Aligned_cols=21  Identities=24%  Similarity=0.115  Sum_probs=17.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhh
Q 031904          122 HGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      .+++|||+|||+|.....++.
T Consensus        47 ~~~~vLDiG~G~G~~~~~l~~   67 (219)
T 1vlm_A           47 PEGRGVEIGVGTGRFAVPLKI   67 (219)
T ss_dssp             CSSCEEEETCTTSTTHHHHTC
T ss_pred             CCCcEEEeCCCCCHHHHHHHH
Confidence            388999999999998876653

>2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens}

Probab=92.46  E-value=0.046  Score=40.73  Aligned_cols=20  Identities=10%  Similarity=0.047  Sum_probs=16.6

Q ss_pred             cCCCeEEEeCCCCChhHHHH
Q 031904          121 LHGKKIVELGSGCGLVGPFG  140 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~a  140 (150)
                      .++.+|||+|||+|..+..+
T Consensus        66 ~~~~~vLDiG~G~G~~~~~l   85 (215)
T 2zfu_A           66 PASLVVADFGCGDCRLASSI   85 (215)
T ss_dssp             CTTSCEEEETCTTCHHHHHC
T ss_pred             CCCCeEEEECCcCCHHHHHh
Confidence            45689999999999987655

>1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A*

Probab=92.44  E-value=0.075  Score=42.43  Aligned_cols=22  Identities=18%  Similarity=0.160  Sum_probs=19.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++++|||||||+|...+.+++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~   96 (281)
T 1mjf_A           75 KPKRVLVIGGGDGGTVREVLQH   96 (281)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTS
T ss_pred             CCCeEEEEcCCcCHHHHHHHhC
Confidence            5689999999999999988877

>2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus}

Probab=92.42  E-value=0.09  Score=42.59  Aligned_cols=16  Identities=19%  Similarity=0.291  Sum_probs=13.2

Q ss_pred             CCCeEEEeCCCCChhH
Q 031904          122 HGKKIVELGSGCGLVG  137 (150)
Q Consensus       122 ~gk~VLELGaGtGL~G  137 (150)
                      .+++|||||||+|..-
T Consensus        48 ~~~~VLDlGCG~G~~l   63 (302)
T 2vdw_A           48 NKRKVLAIDFGNGADL   63 (302)
T ss_dssp             SCCEEEETTCTTTTTH
T ss_pred             CCCeEEEEecCCcHhH
Confidence            4789999999999533

>2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A

Probab=92.27  E-value=0.12  Score=41.49  Aligned_cols=27  Identities=11%  Similarity=-0.011  Sum_probs=23.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..|..|||++||+|-.+++++.++.+.
T Consensus       234 ~~~~~vlD~f~GsGt~~~~a~~~g~~~  260 (297)
T 2zig_A          234 FVGDVVLDPFAGTGTTLIAAARWGRRA  260 (297)
T ss_dssp             CTTCEEEETTCTTTHHHHHHHHTTCEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeE
Confidence            468899999999999999999988653

>2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus}

Probab=92.13  E-value=0.064  Score=39.74  Aligned_cols=19  Identities=26%  Similarity=0.382  Sum_probs=16.2

Q ss_pred             CCCeEEEeCCCCChhHHHH
Q 031904          122 HGKKIVELGSGCGLVGPFG  140 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~a  140 (150)
                      ++++|||+|||+|.....+
T Consensus        36 ~~~~vLdiG~G~G~~~~~l   54 (211)
T 2gs9_A           36 PGESLLEVGAGTGYWLRRL   54 (211)
T ss_dssp             CCSEEEEETCTTCHHHHHC
T ss_pred             CCCeEEEECCCCCHhHHhC
Confidence            7889999999999877654

>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*

Probab=92.12  E-value=0.095  Score=42.46  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||+|||+|...+.++...+.
T Consensus       183 ~~~~vLDvG~G~G~~~~~l~~~~~~  207 (360)
T 1tw3_A          183 NVRHVLDVGGGKGGFAAAIARRAPH  207 (360)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCcEEEEeCCcCcHHHHHHHHhCCC
Confidence            4689999999999999988887654

>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A*

Probab=92.01  E-value=0.097  Score=42.62  Aligned_cols=20  Identities=5%  Similarity=0.331  Sum_probs=17.7

Q ss_pred             CCCeEEEeCCCCChhHHHHh
Q 031904          122 HGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa  141 (150)
                      ...+|||||||+|++++.+.
T Consensus       105 ~p~~VLDlGCG~gpLal~~~  124 (253)
T 3frh_A          105 TPRRVLDIACGLNPLALYER  124 (253)
T ss_dssp             CCSEEEEETCTTTHHHHHHT
T ss_pred             CCCeEEEecCCccHHHHHhc
Confidence            56799999999999998766

>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*

Probab=91.98  E-value=0.087  Score=42.85  Aligned_cols=25  Identities=20%  Similarity=0.121  Sum_probs=21.3

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+++|||||||+|..++.+++..+
T Consensus        94 ~~~~~VLdiG~G~G~~~~~l~~~~~  118 (304)
T 2o07_A           94 PNPRKVLIIGGGDGGVLREVVKHPS  118 (304)
T ss_dssp             SSCCEEEEEECTTSHHHHHHTTCTT
T ss_pred             CCCCEEEEECCCchHHHHHHHHcCC
Confidence            3568999999999999999887653

>2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A*

Probab=91.85  E-value=0.087  Score=44.43  Aligned_cols=24  Identities=21%  Similarity=0.122  Sum_probs=21.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      +++++|||||||+|..||.++...
T Consensus        46 ~~~~~VLDl~aGtG~~~l~~a~~~   69 (378)
T 2dul_A           46 LNPKIVLDALSATGIRGIRFALET   69 (378)
T ss_dssp             HCCSEEEESSCTTSHHHHHHHHHS
T ss_pred             cCCCEEEECCCchhHHHHHHHHhC
Confidence            378899999999999999999863

>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*

Probab=91.79  E-value=0.11  Score=42.21  Aligned_cols=25  Identities=16%  Similarity=0.198  Sum_probs=21.4

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++++|||+|||+|...+.++...|.
T Consensus       182 ~~~~vlDvG~G~G~~~~~l~~~~~~  206 (374)
T 1qzz_A          182 AVRHVLDVGGGNGGMLAAIALRAPH  206 (374)
T ss_dssp             TCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCC
Confidence            4689999999999999998887653

>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}

Probab=91.63  E-value=0.12  Score=41.69  Aligned_cols=24  Identities=17%  Similarity=0.257  Sum_probs=21.2

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++|||+|||+|...+.++...|.
T Consensus       180 ~~~vlDvG~G~G~~~~~l~~~~p~  203 (352)
T 3mcz_A          180 ARTVIDLAGGHGTYLAQVLRRHPQ  203 (352)
T ss_dssp             CCEEEEETCTTCHHHHHHHHHCTT
T ss_pred             CCEEEEeCCCcCHHHHHHHHhCCC
Confidence            789999999999999988887654

>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A

Probab=91.48  E-value=0.12  Score=42.83  Aligned_cols=23  Identities=26%  Similarity=0.193  Sum_probs=20.3

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++++|||||||+|...+.+++..
T Consensus       120 ~~~~VLdIG~G~G~~a~~la~~~  142 (334)
T 1xj5_A          120 NPKKVLVIGGGDGGVLREVARHA  142 (334)
T ss_dssp             CCCEEEEETCSSSHHHHHHTTCT
T ss_pred             CCCEEEEECCCccHHHHHHHHcC
Confidence            56899999999999999988764

>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17

Probab=91.47  E-value=0.13  Score=41.01  Aligned_cols=22  Identities=18%  Similarity=0.105  Sum_probs=19.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++++||+||||+|..++.+++.
T Consensus        75 ~~~~VLdiG~G~G~~~~~l~~~   96 (275)
T 1iy9_A           75 NPEHVLVVGGGDGGVIREILKH   96 (275)
T ss_dssp             SCCEEEEESCTTCHHHHHHTTC
T ss_pred             CCCEEEEECCchHHHHHHHHhC
Confidence            5789999999999999988876

>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*

Probab=91.44  E-value=0.12  Score=41.85  Aligned_cols=23  Identities=17%  Similarity=0.082  Sum_probs=20.2

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++++|||+|||+|.....+++..
T Consensus        95 ~~~~VLdiG~G~G~~~~~l~~~~  117 (304)
T 3bwc_A           95 KPERVLIIGGGDGGVLREVLRHG  117 (304)
T ss_dssp             SCCEEEEEECTTSHHHHHHHTCT
T ss_pred             CCCeEEEEcCCCCHHHHHHHhCC
Confidence            56899999999999999888764

>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}

Probab=91.40  E-value=0.13  Score=42.31  Aligned_cols=25  Identities=16%  Similarity=0.252  Sum_probs=21.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++|||+|||+|...+.++...|.
T Consensus       179 ~~~~vlDvG~G~G~~~~~l~~~~p~  203 (363)
T 3dp7_A          179 HPKRLLDIGGNTGKWATQCVQYNKE  203 (363)
T ss_dssp             CCSEEEEESCTTCHHHHHHHHHSTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            5689999999999999988876654

>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis}

Probab=91.38  E-value=0.063  Score=42.71  Aligned_cols=22  Identities=14%  Similarity=-0.179  Sum_probs=18.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHh
Q 031904          120 LLHGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa  141 (150)
                      .-++++|||+|||+|...+.++
T Consensus       116 l~~~~~vLDiGcG~G~~~~~la  137 (305)
T 3ocj_A          116 LRPGCVVASVPCGWMSELLALD  137 (305)
T ss_dssp             CCTTCEEEETTCTTCHHHHTSC
T ss_pred             CCCCCEEEEecCCCCHHHHHHH
Confidence            3467899999999999888774

>1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A*

Probab=91.36  E-value=0.052  Score=45.16  Aligned_cols=22  Identities=14%  Similarity=0.076  Sum_probs=20.4

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++++|||+|||+|..++.++..
T Consensus       209 ~~~~VLDlg~G~G~~~~~la~~  230 (382)
T 1wxx_A          209 RGERALDVFSYAGGFALHLALG  230 (382)
T ss_dssp             CEEEEEEETCTTTHHHHHHHHH
T ss_pred             CCCeEEEeeeccCHHHHHHHHh
Confidence            7889999999999999999876

>2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A*

Probab=91.34  E-value=0.083  Score=43.32  Aligned_cols=21  Identities=19%  Similarity=0.338  Sum_probs=19.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhh
Q 031904          121 LHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      .+|++|||||||+|..++. +.
T Consensus       194 ~~~~~VLDlg~G~G~~~l~-a~  214 (336)
T 2yx1_A          194 SLNDVVVDMFAGVGPFSIA-CK  214 (336)
T ss_dssp             CTTCEEEETTCTTSHHHHH-TT
T ss_pred             CCCCEEEEccCccCHHHHh-cc
Confidence            3788999999999999999 77

>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A*

Probab=91.15  E-value=0.087  Score=41.58  Aligned_cols=17  Identities=29%  Similarity=0.544  Sum_probs=13.7

Q ss_pred             CCCeEEEeCCCCChhHH
Q 031904          122 HGKKIVELGSGCGLVGP  138 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi  138 (150)
                      ++.+|||+|||+|-..+
T Consensus        52 ~~~~VLDiG~GtG~~~~   68 (292)
T 2aot_A           52 SEIKILSIGGGAGEIDL   68 (292)
T ss_dssp             SEEEEEEETCTTSHHHH
T ss_pred             CCCeEEEEcCCCCHHHH
Confidence            45799999999996553

>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}

Probab=91.14  E-value=0.12  Score=42.16  Aligned_cols=25  Identities=16%  Similarity=0.085  Sum_probs=21.3

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||+|||+|...+.++...|.
T Consensus       184 ~~~~vLDvG~G~G~~~~~l~~~~p~  208 (348)
T 3lst_A          184 ATGTVADVGGGRGGFLLTVLREHPG  208 (348)
T ss_dssp             SSEEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCceEEEECCccCHHHHHHHHHCCC
Confidence            4679999999999999988876654

>3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A*

Probab=91.13  E-value=0.13  Score=44.84  Aligned_cols=25  Identities=28%  Similarity=0.280  Sum_probs=21.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -.+.+|||||||+|-+.+.+|...+
T Consensus       172 ~~gd~VLDLGCGtG~l~l~lA~~~g  196 (438)
T 3uwp_A          172 TDDDLFVDLGSGVGQVVLQVAAATN  196 (438)
T ss_dssp             CTTCEEEEESCTTSHHHHHHHHHCC
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHCC
Confidence            4678999999999999998886533

>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*

Probab=91.13  E-value=0.12  Score=41.58  Aligned_cols=23  Identities=22%  Similarity=0.099  Sum_probs=20.2

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++++|||||||+|..++.+++..
T Consensus        90 ~~~~VLdiG~G~G~~~~~l~~~~  112 (296)
T 1inl_A           90 NPKKVLIIGGGDGGTLREVLKHD  112 (296)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTST
T ss_pred             CCCEEEEEcCCcCHHHHHHHhcC
Confidence            56899999999999999988763

>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17

Probab=91.05  E-value=0.14  Score=41.98  Aligned_cols=24  Identities=17%  Similarity=0.127  Sum_probs=20.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++|||||||+|...+.+++..+
T Consensus       108 ~~~~VLdIG~G~G~~~~~l~~~~~  131 (314)
T 2b2c_A          108 DPKRVLIIGGGDGGILREVLKHES  131 (314)
T ss_dssp             SCCEEEEESCTTSHHHHHHTTCTT
T ss_pred             CCCEEEEEcCCcCHHHHHHHHcCC
Confidence            468999999999999999887643

>3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus}

Probab=91.01  E-value=0.51  Score=38.40  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=27.2

Q ss_pred             HHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          104 VVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       104 i~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..++..+...    ...-.+.+|||+|||+|...+.++..+
T Consensus       189 ~~la~~l~~~----~~~~~~~~vLD~gcGsG~~~ie~a~~~  225 (354)
T 3tma_A          189 PVLAQALLRL----ADARPGMRVLDPFTGSGTIALEAASTL  225 (354)
T ss_dssp             HHHHHHHHHH----TTCCTTCCEEESSCTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHH----hCCCCCCEEEeCCCCcCHHHHHHHHhh
Confidence            3455555543    123457899999999999999999876

>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*

Probab=90.98  E-value=0.13  Score=41.88  Aligned_cols=23  Identities=17%  Similarity=0.111  Sum_probs=20.1

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++++|||||||+|.....+++..
T Consensus        77 ~~~~VLdiG~G~G~~~~~l~~~~   99 (314)
T 1uir_A           77 EPKRVLIVGGGEGATLREVLKHP   99 (314)
T ss_dssp             CCCEEEEEECTTSHHHHHHTTST
T ss_pred             CCCeEEEEcCCcCHHHHHHHhcC
Confidence            56899999999999999888763

>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*

Probab=90.91  E-value=0.13  Score=42.06  Aligned_cols=23  Identities=22%  Similarity=0.251  Sum_probs=20.2

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ++++|||+|||+|...+.+++..
T Consensus       116 ~~~~VLdiG~G~G~~~~~l~~~~  138 (321)
T 2pt6_A          116 EPKNVLVVGGGDGGIIRELCKYK  138 (321)
T ss_dssp             SCCEEEEEECTTCHHHHHHTTCT
T ss_pred             CCCEEEEEcCCccHHHHHHHHcC
Confidence            56899999999999999988763

>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*

Probab=90.87  E-value=0.16  Score=41.40  Aligned_cols=25  Identities=24%  Similarity=0.428  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -++++|||+|||+|...+.++...|
T Consensus       189 ~~~~~vLDvG~G~G~~~~~l~~~~p  213 (359)
T 1x19_A          189 DGVKKMIDVGGGIGDISAAMLKHFP  213 (359)
T ss_dssp             TTCCEEEEESCTTCHHHHHHHHHCT
T ss_pred             CCCCEEEEECCcccHHHHHHHHHCC
Confidence            3568999999999999999888765

>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*

Probab=90.74  E-value=0.14  Score=40.92  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=20.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ++++||+||||+|.....+++..+
T Consensus        78 ~~~~VLdiG~G~G~~~~~l~~~~~  101 (283)
T 2i7c_A           78 EPKNVLVVGGGDGGIIRELCKYKS  101 (283)
T ss_dssp             SCCEEEEEECTTSHHHHHHTTCTT
T ss_pred             CCCeEEEEeCCcCHHHHHHHHcCC
Confidence            568999999999999998887643

>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*

Probab=90.46  E-value=0.17  Score=41.06  Aligned_cols=25  Identities=28%  Similarity=0.614  Sum_probs=21.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+|||+|||+|...+.++...|.
T Consensus       188 ~~~~vlDvG~G~G~~~~~l~~~~p~  212 (352)
T 1fp2_A          188 GLESIVDVGGGTGTTAKIICETFPK  212 (352)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCceEEEeCCCccHHHHHHHHHCCC
Confidence            4579999999999999988876653

>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*

Probab=90.40  E-value=0.18  Score=41.43  Aligned_cols=25  Identities=28%  Similarity=0.402  Sum_probs=21.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||+|||+|...+.++...|.
T Consensus       209 ~~~~vLDvG~G~G~~~~~l~~~~~~  233 (372)
T 1fp1_D          209 GISTLVDVGGGSGRNLELIISKYPL  233 (372)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCcHHHHHHHHHCCC
Confidence            4579999999999999998887764

>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A*

Probab=90.13  E-value=0.19  Score=41.44  Aligned_cols=25  Identities=32%  Similarity=0.546  Sum_probs=21.3

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||+|||+|...+.++...|.
T Consensus       203 ~~~~vlDvG~G~G~~~~~l~~~~p~  227 (368)
T 3reo_A          203 GLTTIVDVGGGTGAVASMIVAKYPS  227 (368)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCcCHHHHHHHHhCCC
Confidence            3579999999999999998887664

>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}

Probab=90.10  E-value=0.2  Score=39.81  Aligned_cols=25  Identities=20%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .++.+|||+|||+|...+.++...|
T Consensus       164 ~~~~~vlDvG~G~G~~~~~l~~~~p  188 (335)
T 2r3s_A          164 IEPLKVLDISASHGLFGIAVAQHNP  188 (335)
T ss_dssp             CCCSEEEEETCTTCHHHHHHHHHCT
T ss_pred             CCCCEEEEECCCcCHHHHHHHHHCC
Confidence            3568999999999999988887654

>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A

Probab=90.06  E-value=0.15  Score=40.96  Aligned_cols=24  Identities=17%  Similarity=-0.029  Sum_probs=21.5

Q ss_pred             CeEEEeCCCCChhHHHHhhcCCcc
Q 031904          124 KKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       124 k~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .+|||+|||+|-.++.+|..+..+
T Consensus        90 ~~VLDl~~G~G~dal~lA~~g~~V  113 (258)
T 2oyr_A           90 PDVVDATAGLGRDAFVLASVGCRV  113 (258)
T ss_dssp             CCEEETTCTTCHHHHHHHHHTCCE
T ss_pred             CEEEEcCCcCCHHHHHHHHcCCEE
Confidence            899999999999999999877654

>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}

Probab=89.85  E-value=0.16  Score=48.05  Aligned_cols=25  Identities=16%  Similarity=0.146  Sum_probs=22.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+++|||+|||+|...+.++..++
T Consensus       720 ~~g~rVLDVGCGTG~lai~LAr~g~  744 (950)
T 3htx_A          720 SSASTLVDFGCGSGSLLDSLLDYPT  744 (950)
T ss_dssp             SCCSEEEEETCSSSHHHHHHTSSCC
T ss_pred             cCCCEEEEECCCCCHHHHHHHHhCC
Confidence            3788999999999999999998873

>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*

Probab=89.59  E-value=0.23  Score=40.47  Aligned_cols=25  Identities=24%  Similarity=0.379  Sum_probs=21.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+|||+|||+|.....++...|.
T Consensus       193 ~~~~vlDvG~G~G~~~~~l~~~~p~  217 (358)
T 1zg3_A          193 GLESLVDVGGGTGGVTKLIHEIFPH  217 (358)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEECCCcCHHHHHHHHHCCC
Confidence            4579999999999999998887664

>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A*

Probab=89.57  E-value=0.06  Score=44.50  Aligned_cols=24  Identities=8%  Similarity=-0.035  Sum_probs=20.5

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+||+||||+|++++.++...|.
T Consensus       133 p~~VLDLGCG~GpLAl~~~~~~p~  156 (281)
T 3lcv_B          133 PNTLRDLACGLNPLAAPWMGLPAE  156 (281)
T ss_dssp             CSEEEETTCTTGGGCCTTTTCCTT
T ss_pred             CceeeeeccCccHHHHHHHhhCCC
Confidence            569999999999999988877554

>3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A

Probab=89.57  E-value=0.2  Score=39.61  Aligned_cols=24  Identities=8%  Similarity=-0.043  Sum_probs=20.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -.|.+|||+|||+|..++.++...
T Consensus        82 ~~g~~VLDlgaG~G~~t~~la~~~  105 (274)
T 3ajd_A           82 REDDFILDMCAAPGGKTTHLAQLM  105 (274)
T ss_dssp             CTTCEEEETTCTTCHHHHHHHHHT
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHc
Confidence            357899999999999998888754

>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*

Probab=89.49  E-value=0.19  Score=40.31  Aligned_cols=24  Identities=17%  Similarity=0.123  Sum_probs=20.5

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++|||+|||+|...+.++...|.
T Consensus       170 ~~~vlDvG~G~G~~~~~l~~~~p~  193 (332)
T 3i53_A          170 LGHVVDVGGGSGGLLSALLTAHED  193 (332)
T ss_dssp             GSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCEEEEeCCChhHHHHHHHHHCCC
Confidence            579999999999999888876654

>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*

Probab=89.27  E-value=0.24  Score=40.66  Aligned_cols=25  Identities=20%  Similarity=0.329  Sum_probs=21.4

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||+|||+|...+.++...|.
T Consensus       202 ~~~~vlDvG~G~G~~~~~l~~~~p~  226 (369)
T 3gwz_A          202 GAATAVDIGGGRGSLMAAVLDAFPG  226 (369)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCcEEEEeCCCccHHHHHHHHHCCC
Confidence            4689999999999999988887654

>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}

Probab=89.08  E-value=0.25  Score=40.81  Aligned_cols=25  Identities=28%  Similarity=0.033  Sum_probs=22.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..++++|||+| |+|..++.++..++
T Consensus       170 ~~~~~~VLDlG-G~G~~~~~la~~~~  194 (373)
T 2qm3_A          170 DLENKDIFVLG-DDDLTSIALMLSGL  194 (373)
T ss_dssp             CSTTCEEEEES-CTTCHHHHHHHHTC
T ss_pred             CCCCCEEEEEC-CCCHHHHHHHHhCC
Confidence            35789999999 99999999998876

>1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38

Probab=88.72  E-value=0.26  Score=39.90  Aligned_cols=24  Identities=8%  Similarity=0.128  Sum_probs=20.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      -.|.+|||+|||+|..++.++...
T Consensus       117 ~~g~~VLDlg~G~G~~t~~la~~~  140 (315)
T 1ixk_A          117 KPGEIVADMAAAPGGKTSYLAQLM  140 (315)
T ss_dssp             CTTCEEEECCSSCSHHHHHHHHHT
T ss_pred             CCCCEEEEeCCCCCHHHHHHHHHh
Confidence            357899999999999999888764

>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*

Probab=88.52  E-value=0.3  Score=40.29  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=21.3

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|||+|||+|...+.++...|.
T Consensus       201 ~~~~vlDvG~G~G~~~~~l~~~~p~  225 (364)
T 3p9c_A          201 GLGTLVDVGGGVGATVAAIAAHYPT  225 (364)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHHCCC
Confidence            3579999999999999998876654

>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}

Probab=88.36  E-value=0.3  Score=39.07  Aligned_cols=26  Identities=23%  Similarity=0.443  Sum_probs=21.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++++|||+|||+|...+.++...|.
T Consensus       166 ~~~~~vlDvG~G~G~~~~~l~~~~p~  191 (334)
T 2ip2_A          166 FRGRSFVDVGGGSGELTKAILQAEPS  191 (334)
T ss_dssp             CTTCEEEEETCTTCHHHHHHHHHCTT
T ss_pred             CCCCEEEEeCCCchHHHHHHHHHCCC
Confidence            33489999999999999988876553

>2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A

Probab=87.42  E-value=0.28  Score=39.02  Aligned_cols=22  Identities=5%  Similarity=-0.286  Sum_probs=18.2

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .+++|||+|||+|.....+++.
T Consensus        72 ~~~~VL~iG~G~G~~~~~ll~~   93 (262)
T 2cmg_A           72 ELKEVLIVDGFDLELAHQLFKY   93 (262)
T ss_dssp             CCCEEEEESSCCHHHHHHHTTS
T ss_pred             CCCEEEEEeCCcCHHHHHHHhC
Confidence            4689999999999888766655

>4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A*

Probab=87.37  E-value=0.21  Score=45.34  Aligned_cols=27  Identities=15%  Similarity=0.070  Sum_probs=20.8

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ...+++.||++|||+|++.+.++..+.
T Consensus       354 ~~~~~~vVldVGaGrGpLv~~al~A~a  380 (637)
T 4gqb_A          354 KDTNVQVLMVLGAGRGPLVNASLRAAK  380 (637)
T ss_dssp             TTTCEEEEEEESCTTSHHHHHHHHHHH
T ss_pred             ccCCCcEEEEECCCCcHHHHHHHHHHH
Confidence            345667899999999999776666554

>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}

Probab=85.72  E-value=0.34  Score=40.16  Aligned_cols=22  Identities=27%  Similarity=0.551  Sum_probs=18.7

Q ss_pred             CeEEEeCCCCChhHHHHhhcCC
Q 031904          124 KKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       124 k~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+||+||||+|.....+++..|
T Consensus        91 ~rVLdIG~G~G~la~~la~~~p  112 (317)
T 3gjy_A           91 LRITHLGGGACTMARYFADVYP  112 (317)
T ss_dssp             CEEEEESCGGGHHHHHHHHHST
T ss_pred             CEEEEEECCcCHHHHHHHHHCC
Confidence            3999999999999988887543

>3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A*

Probab=85.71  E-value=0.61  Score=40.55  Aligned_cols=24  Identities=13%  Similarity=0.205  Sum_probs=20.8

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .|.+|||||||+|-.++.+|...+
T Consensus       101 ~g~~VLDlgaGpG~kt~~LA~~~~  124 (464)
T 3m6w_A          101 PGERVLDLAAAPGGKTTHLAARMG  124 (464)
T ss_dssp             TTCEEEESSCTTCHHHHHHHHHTT
T ss_pred             CCCEEEEEcCCcCHHHHHHHHhCC
Confidence            578999999999999998887643

>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*

Probab=85.69  E-value=0.34  Score=41.19  Aligned_cols=22  Identities=14%  Similarity=-0.058  Sum_probs=19.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .|++||||+||+|..||.++..
T Consensus        52 ~g~~VLDlfaGtG~~sl~aa~~   73 (392)
T 3axs_A           52 RPVKVADPLSASGIRAIRFLLE   73 (392)
T ss_dssp             SCEEEEESSCTTSHHHHHHHHH
T ss_pred             CCCEEEECCCcccHHHHHHHHh
Confidence            4789999999999999998874

>2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli}

Probab=85.60  E-value=0.29  Score=39.11  Aligned_cols=21  Identities=24%  Similarity=-0.001  Sum_probs=18.1

Q ss_pred             CCeEEEeCCCCChhHHHHhhc
Q 031904          123 GKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      +.+|||+|+|+|+..++++..
T Consensus        61 ~~~ILEiGfGtG~n~l~~~~~   81 (257)
T 2qy6_A           61 LFVVAESGFGTGLNFLTLWQA   81 (257)
T ss_dssp             EEEEEESCCTTSHHHHHHHHH
T ss_pred             CCEEEEECCChHHHHHHHHHH
Confidence            469999999999999987664

>1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A*

Probab=85.09  E-value=0.48  Score=38.71  Aligned_cols=24  Identities=21%  Similarity=0.109  Sum_probs=20.9

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.+|||+|||+|-.++.++...+
T Consensus        26 ~g~~vLD~g~G~G~~s~~la~~~~   49 (301)
T 1m6y_A           26 DEKIILDCTVGEGGHSRAILEHCP   49 (301)
T ss_dssp             TTCEEEETTCTTSHHHHHHHHHCT
T ss_pred             CCCEEEEEeCCcCHHHHHHHHHCC
Confidence            578999999999999998887653

>1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A

Probab=84.73  E-value=0.64  Score=39.17  Aligned_cols=25  Identities=20%  Similarity=0.202  Sum_probs=21.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+|.+|||+|||+|...+.++...+
T Consensus       245 ~~g~~VLDlgaG~G~~t~~la~~~~  269 (429)
T 1sqg_A          245 QNGEHILDLCAAPGGKTTHILEVAP  269 (429)
T ss_dssp             CTTCEEEEESCTTCHHHHHHHHHCT
T ss_pred             CCcCeEEEECCCchHHHHHHHHHcC
Confidence            3578999999999999999988775

>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca}

Probab=84.38  E-value=0.63  Score=36.90  Aligned_cols=23  Identities=26%  Similarity=0.294  Sum_probs=18.3

Q ss_pred             CCeEEEeCCCC---ChhHHHHhhcCC
Q 031904          123 GKKIVELGSGC---GLVGPFGCSSYP  145 (150)
Q Consensus       123 gk~VLELGaGt---GL~Gi~aa~l~~  145 (150)
                      .++|||||||+   |.....+....|
T Consensus        78 ~~~vLDlGcG~pt~G~~~~~~~~~~p  103 (274)
T 2qe6_A           78 ISQFLDLGSGLPTVQNTHEVAQSVNP  103 (274)
T ss_dssp             CCEEEEETCCSCCSSCHHHHHHHHCT
T ss_pred             CCEEEEECCCCCCCChHHHHHHHhCC
Confidence            37999999999   988776666554

>3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A

Probab=82.87  E-value=0.51  Score=43.69  Aligned_cols=19  Identities=32%  Similarity=0.279  Sum_probs=15.6

Q ss_pred             CCeEEEeCCCCChhHHHHh
Q 031904          123 GKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa  141 (150)
                      ++.||++|||+|++++.+.
T Consensus       410 ~~VVldVGaGtGpLs~~al  428 (745)
T 3ua3_A          410 TVVIYLLGGGRGPIGTKIL  428 (745)
T ss_dssp             EEEEEEESCTTCHHHHHHH
T ss_pred             CcEEEEECCCCCHHHHHHH
Confidence            4689999999999986543

>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*

Probab=82.51  E-value=0.82  Score=37.42  Aligned_cols=25  Identities=28%  Similarity=0.337  Sum_probs=22.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++||++|||+|...+.++...|.
T Consensus       179 ~~~~v~DvGgG~G~~~~~l~~~~p~  203 (353)
T 4a6d_A          179 VFPLMCDLGGGAGALAKECMSLYPG  203 (353)
T ss_dssp             GCSEEEEETCTTSHHHHHHHHHCSS
T ss_pred             cCCeEEeeCCCCCHHHHHHHHhCCC
Confidence            4579999999999999999988775

>3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile}

Probab=82.29  E-value=0.9  Score=38.07  Aligned_cols=37  Identities=16%  Similarity=-0.029  Sum_probs=27.4

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .|+..|...    ...-.+.+|||++||+|-..|-+|..+.
T Consensus       182 ~lAa~ll~~----~~~~~~~~vlDp~CGSGt~lieaa~~~~  218 (385)
T 3ldu_A          182 TLAAGLIYL----TPWKAGRVLVDPMCGSGTILIEAAMIGI  218 (385)
T ss_dssp             HHHHHHHHT----SCCCTTSCEEETTCTTCHHHHHHHHHHT
T ss_pred             HHHHHHHHh----hCCCCCCeEEEcCCCCCHHHHHHHHHHh
Confidence            366655553    2234678999999999999999988764

>3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium}

Probab=82.09  E-value=0.94  Score=39.21  Aligned_cols=23  Identities=17%  Similarity=0.172  Sum_probs=19.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      -.|.+|||||||+|-.++.+|..
T Consensus       104 ~~g~~VLDlcaGpGgkt~~lA~~  126 (456)
T 3m4x_A          104 KPGEKVLDLCAAPGGKSTQLAAQ  126 (456)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHH
T ss_pred             CCCCEEEEECCCcCHHHHHHHHH
Confidence            35789999999999999888865

>1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11

Probab=81.92  E-value=1.3  Score=34.72  Aligned_cols=27  Identities=7%  Similarity=-0.116  Sum_probs=23.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      -.|..||+..||+|-.+++|..++.+.
T Consensus       211 ~~~~~vlD~f~GsGtt~~~a~~~gr~~  237 (260)
T 1g60_A          211 NPNDLVLDCFMGSGTTAIVAKKLGRNF  237 (260)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHTTCEE
T ss_pred             CCCCEEEECCCCCCHHHHHHHHcCCeE
Confidence            467899999999999999999988653

>2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45

Probab=81.87  E-value=0.49  Score=38.42  Aligned_cols=23  Identities=9%  Similarity=0.029  Sum_probs=19.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .+.+|||+|||+|...+.++...
T Consensus       130 ~~~~VlDp~cGsG~~l~~~~~~~  152 (344)
T 2f8l_A          130 KNVSILDPACGTANLLTTVINQL  152 (344)
T ss_dssp             SEEEEEETTCTTSHHHHHHHHHH
T ss_pred             CCCEEEeCCCCccHHHHHHHHHH
Confidence            45799999999999998887654

>2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli}

Probab=81.76  E-value=1.2  Score=38.55  Aligned_cols=23  Identities=4%  Similarity=0.082  Sum_probs=20.3

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .|.+|||+|||+|-.++.+|...
T Consensus       117 ~g~~VLDl~aGpG~kt~~lA~~~  139 (479)
T 2frx_A          117 APQRVMDVAAAPGSKTTQISARM  139 (479)
T ss_dssp             CCSEEEESSCTTSHHHHHHHHHT
T ss_pred             CCCEEEEeCCCCCHHHHHHHHhC
Confidence            67899999999999999888764

>2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii}

Probab=81.35  E-value=0.88  Score=38.66  Aligned_cols=25  Identities=16%  Similarity=0.131  Sum_probs=20.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      -.|.+|||+|||+|..++.++...+
T Consensus       258 ~~g~~VLDlgaG~G~~t~~la~~~~  282 (450)
T 2yxl_A          258 KPGETVVDLAAAPGGKTTHLAELMK  282 (450)
T ss_dssp             CTTCEEEESSCTTCHHHHHHHHHTT
T ss_pred             CCcCEEEEeCCCccHHHHHHHHHcC
Confidence            3578999999999999998887653

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	150
d2fyta1	311	Protein arginine N-methyltransferase 3, PRMT3 {Hum	97.69
d2nxca1	254	PrmA-like protein TTHA0656 (TT0836) {Thermus therm	97.64
d1ne2a_	197	Hypothetical protein Ta1320 {Archaeon Thermoplasma	97.63
d1oria_	316	Protein arginine N-methyltransferase 1, PRMT1 {Rat	97.6
d1dusa_	194	Hypothetical protein MJ0882 {Archaeon Methanococcu	97.58
d1g6q1_	328	Arginine methyltransferase, HMT1 {Baker's yeast (S	97.49
d1wy7a1	201	Hypothetical protein PH1948 {Archaeon Pyrococcus h	97.31
d1l3ia_	186	Precorrin-6Y methyltransferase (CbiT) {Archaeon Me	96.99
d1ve3a1	226	Hypothetical protein PH0226 {Archaeon Pyrococcus h	96.81
d1ws6a1	171	Methyltransferase TTHA0928 {Thermus thermophilus [	96.78
d2avna1	246	Hypothetical methyltransferase TM1389 {Thermotoga	96.71
d1wzna1	251	Hypothetical methyltransferase PH1305 {Archaeon Py	96.68
d1y8ca_	246	Putative methyltransferase CAC2371 {Clostridium ac	96.5
d2bzga1	229	Thiopurine S-methyltransferase {Human (Homo sapien	96.48
d1jsxa_	207	Glucose-inhibited division protein B (GidB) {Esche	96.42
d1zx0a1	229	Guanidinoacetate methyltransferase {Human (Homo sa	96.32
d2o57a1	282	Putative sarcosine dimethylglycine methyltransfera	96.31
d2i6ga1	198	Putative methyltransferase TehB {Salmonella typhim	96.24
d1nkva_	245	Hypothetical Protein YjhP {Escherichia coli [TaxId	96.13
d1im8a_	225	Hypothetical protein HI0319 (YecO) {Haemophilus in	96.12
d1xvaa_	292	Glycine N-methyltransferase {Rat (Rattus norvegicu	96.1
d2gh1a1	281	Methyltransferase BC2162 {Bacillus cereus [TaxId:	95.99
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	95.86
d1nt2a_	209	Fibrillarin homologue {Archaeon Archaeoglobus fulg	95.78
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	95.77
d2b3ta1	274	N5-glutamine methyltransferase, HemK {Escherichia	95.52
d2a14a1	257	Indolethylamine N-methyltransferase, INMT {Human (	95.51
d1ri5a_	252	mRNA cap (Guanine N-7) methyltransferase {Fungus (	95.4
d2fpoa1	183	Methylase YhhF {Escherichia coli [TaxId: 562]}	95.39
d2ex4a1	222	Adrenal gland protein AD-003 (C9orf32) {Human (Hom	95.36
d1g8sa_	230	Fibrillarin homologue {Archaeon Methanococcus jann	95.32
d1xdza_	239	Glucose-inhibited division protein B (GidB) {Bacil	95.05
d2fhpa1	182	Putative methylase EF2452 {Enterococcus faecalis [	95.02
d1tw3a2	253	Carminomycin 4-O-methyltransferase {Streptomyces p	94.7
d2fk8a1	280	Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri	94.62
d2g72a1	263	Phenylethanolamine N-methyltransferase, PNMTase {H	94.6
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	94.56
d1kpia_	291	CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}	94.5
d1kpga_	285	CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}	94.5
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	94.41
d1p91a_	268	rRNA methyltransferase RlmA {Escherichia coli [Tax	94.41
d1jg1a_	215	Protein-L-isoaspartyl O-methyltransferase {Archaeo	94.2
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	94.14
d2frna1	260	Hypothetical protein PH0793 {Pyrococcus horikoshii	94.14
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	93.93
d2as0a2	324	Hypothetical protein PH1915, middle and C-terminal	93.35
d1r18a_	223	Protein-L-isoaspartyl O-methyltransferase {Fruit f	93.32
d2b25a1	324	Hypothetical protein FLJ20628 {Human (Homo sapiens	93.16
d1vlma_	208	Possible histamine N-methyltransferase TM1293 {The	93.15
d2fcaa1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil	93.07
d2cl5a1	214	Catechol O-methyltransferase, COMT {Rat (Rattus no	92.98
d1yuba_	245	rRNA adenine dimethylase {Streptococcus pneumoniae	92.91
d2avda1	219	COMT domain-containing protein 1, COMTD1 {Human (H	92.63
d1xtpa_	254	Hypothetical protein Lmaj004091aaa (LmjF30.0810) {	92.03
d1jqea_	280	Histamine methyltransferase {Human (Homo sapiens)	91.9
d2h00a1	250	Methyltransferase 10 domain containing protein MET	91.88
d1wxxa2	318	Hypothetical protein TTHA1280, middle and C-termin	91.83
d2igta1	309	Putative methyltransferase Atu0340 {Agrobacterium	91.81
d1g8aa_	227	Fibrillarin homologue {Archaeon Pyrococcus horikos	91.65
d1u2za_	406	Catalytic, N-terminal domain of histone methyltran	91.59
d1nw3a_	328	Catalytic, N-terminal domain of histone methyltran	91.53
d1qzza2	256	Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu	91.37
d2b78a2	317	Hypothetical protein SMu776, middle and C-terminal	90.52
d1yzha1	204	tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep	90.43
d2ifta1	183	Putative methylase HI0767 {Haemophilus influenzae	90.17
d1uwva2	358	rRNA (Uracil-5-)-methyltransferase RumA, catalytic	90.06
d1susa1	227	Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag	88.37
d1nv8a_	271	N5-glutamine methyltransferase, HemK {Thermotoga m	86.77
d1kyza2	243	Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra	83.28
d1fp1d2	244	Chalcone O-methyltransferase {Alfalfa (Medicago sa	80.11

>d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 3, PRMT3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.69  E-value=1.5e-05  Score=62.96  Aligned_cols=30  Identities=17%  Similarity=0.448  Sum_probs=26.6

Q ss_pred             ccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          118 MLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       118 ~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ...++|++|||||||+|++++.+|+.|+++
T Consensus        31 ~~~~~~~~VLDiGcG~G~lsl~aa~~Ga~~   60 (311)
T d2fyta1          31 PHIFKDKVVLDVGCGTGILSMFAAKAGAKK   60 (311)
T ss_dssp             GGGTTTCEEEEETCTTSHHHHHHHHTTCSE
T ss_pred             cccCCcCEEEEECCCCCHHHHHHHHcCCCE
Confidence            356899999999999999999999998753

>d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ribosomal protein L11 methyltransferase PrmA
domain: PrmA-like protein TTHA0656 (TT0836)
species: Thermus thermophilus [TaxId: 274]

Probab=97.64  E-value=1.9e-05  Score=61.94  Aligned_cols=61  Identities=21%  Similarity=0.315  Sum_probs=42.1

Q ss_pred             ceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904           78 HSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus        78 ~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ..+.|.-+|..  .-| ||  .-+.+..+.++|.+.      ..+|++|||+|||+|+.++.+++++.++.|
T Consensus        87 ~~~~i~i~pg~--aFG-TG--~H~TT~l~l~~l~~~------~~~g~~VLDiGcGsG~l~i~aa~~g~~V~g  147 (254)
T d2nxca1          87 AEIPLVIEPGM--AFG-TG--HHETTRLALKALARH------LRPGDKVLDLGTGSGVLAIAAEKLGGKALG  147 (254)
T ss_dssp             SSEEEECCCC--------C--CSHHHHHHHHHHHHH------CCTTCEEEEETCTTSHHHHHHHHTTCEEEE
T ss_pred             cceEEEEcccc--ccC-cc--ccchhhHHHHHHHhh------cCccCEEEEcccchhHHHHHHHhcCCEEEE
Confidence            34566666642  122 23  334667777888763      468999999999999999999999876543

>d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein Ta1320
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.63  E-value=1.3e-05  Score=61.09  Aligned_cols=28  Identities=14%  Similarity=0.201  Sum_probs=25.5

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+.|++|||||||+|.++|.++.++++
T Consensus        45 ~dl~Gk~VLDlGcGtG~l~i~a~~~ga~   72 (197)
T d1ne2a_          45 GNIGGRSVIDAGTGNGILACGSYLLGAE   72 (197)
T ss_dssp             TSSBTSEEEEETCTTCHHHHHHHHTTBS
T ss_pred             CCCCCCEEEEeCCCCcHHHHHHHHcCCC
Confidence            4589999999999999999999999876

>d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Protein arginine N-methyltransferase 1, PRMT1
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=1.4e-05  Score=63.60  Aligned_cols=29  Identities=24%  Similarity=0.454  Sum_probs=26.2

Q ss_pred             ccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          118 MLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       118 ~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ...++|++|||||||+|++++.||+.|++
T Consensus        29 ~~~~~~~~VLDiGcG~G~ls~~aa~~Ga~   57 (316)
T d1oria_          29 RHLFKDKVVLDVGSGTGILCMFAAKAGAR   57 (316)
T ss_dssp             HHHHTTCEEEEETCTTSHHHHHHHHTTCS
T ss_pred             cccCCcCEEEEEecCCcHHHHHHHHhCCC
Confidence            34679999999999999999999999876

>d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein MJ0882
domain: Hypothetical protein MJ0882
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.58  E-value=8.4e-05  Score=54.69  Aligned_cols=66  Identities=14%  Similarity=0.120  Sum_probs=44.4

Q ss_pred             eEEEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904           70 NLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus        70 ~l~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      .++..+.|+++.+.+.+.-...     ..++.++-+|.++|.        ..++++|||+|||+|..++.++..+++..
T Consensus        13 ~~~~~~~g~~~~~~t~~gvF~~-----~~~d~~t~lLi~~l~--------~~~~~~VLDiGcG~G~~~~~la~~~~~v~   78 (194)
T d1dusa_          13 IVEDILRGKKLKFKTDSGVFSY-----GKVDKGTKILVENVV--------VDKDDDILDLGCGYGVIGIALADEVKSTT   78 (194)
T ss_dssp             EEEEEETTEEEEEEEETTSTTT-----TSCCHHHHHHHHHCC--------CCTTCEEEEETCTTSHHHHHHGGGSSEEE
T ss_pred             EEEEEECCeeEEEEcCCCccCC-----CCcCHHHHHHHHhCC--------cCCCCeEEEEeecCChhHHHHHhhccccc
Confidence            3455678999998876542111     123445555544432        35688999999999999999998877543

>d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arginine methyltransferase
domain: Arginine methyltransferase, HMT1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.49  E-value=2.4e-05  Score=62.38  Aligned_cols=28  Identities=21%  Similarity=0.445  Sum_probs=25.5

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++|++|||||||+|++++.||+.|++
T Consensus        35 ~~~~~~~VLDlGcGtG~ls~~aa~~Ga~   62 (328)
T d1g6q1_          35 DLFKDKIVLDVGCGTGILSMFAAKHGAK   62 (328)
T ss_dssp             HHHTTCEEEEETCTTSHHHHHHHHTCCS
T ss_pred             ccCCcCEEEEeCCCCCHHHHHHHHhCCC
Confidence            4578999999999999999999999875

>d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Ta1320-like
domain: Hypothetical protein PH1948
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.31  E-value=6.8e-05  Score=56.35  Aligned_cols=28  Identities=21%  Similarity=0.215  Sum_probs=25.0

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++|++|||||||||..++.++..++.
T Consensus        43 ~dl~g~~vLDlg~GtG~l~i~a~~~g~~   70 (201)
T d1wy7a1          43 GDIEGKVVADLGAGTGVLSYGALLLGAK   70 (201)
T ss_dssp             TSSTTCEEEEETCTTCHHHHHHHHTTCS
T ss_pred             CCCCCCEEEECcCcchHHHHHHHHcCCC
Confidence            4689999999999999999999888764

>d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Precorrin-6Y methyltransferase (CbiT)
domain: Precorrin-6Y methyltransferase (CbiT)
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=96.99  E-value=0.00018  Score=52.65  Aligned_cols=29  Identities=17%  Similarity=0.082  Sum_probs=24.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRF  148 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~  148 (150)
                      ..+|.+|||+|||+|..++.+|..+++.+
T Consensus        31 ~~~g~~VLDiGcGsG~~s~~lA~~~~~V~   59 (186)
T d1l3ia_          31 PGKNDVAVDVGCGTGGVTLELAGRVRRVY   59 (186)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHTTSSEEE
T ss_pred             CCCCCEEEEEECCeEcccccccccceEEE
Confidence            35789999999999999999998776544

>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical protein PH0226
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.81  E-value=0.00055  Score=49.59  Aligned_cols=27  Identities=15%  Similarity=-0.022  Sum_probs=22.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      -++.+|||||||+|...+.++..+...
T Consensus        36 ~~~~~ILDiGcG~G~~~~~la~~~~~v   62 (226)
T d1ve3a1          36 KKRGKVLDLACGVGGFSFLLEDYGFEV   62 (226)
T ss_dssp             CSCCEEEEETCTTSHHHHHHHHTTCEE
T ss_pred             CCCCEEEEECCCcchhhhhHhhhhccc
Confidence            356799999999999999999876543

>d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methyltransferase TTHA0928
species: Thermus thermophilus [TaxId: 274]

Probab=96.78  E-value=0.00057  Score=49.78  Aligned_cols=37  Identities=19%  Similarity=0.090  Sum_probs=28.7

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .|..||.+      ...+|++|||||||+|..||.++..|..+
T Consensus        30 ~lf~~l~~------~~~~g~~vLDl~~G~G~~~i~a~~~ga~v   66 (171)
T d1ws6a1          30 ALFDYLRL------RYPRRGRFLDPFAGSGAVGLEAASEGWEA   66 (171)
T ss_dssp             HHHHHHHH------HCTTCCEEEEETCSSCHHHHHHHHTTCEE
T ss_pred             HHHHHhhc------cccCCCeEEEeccccchhhhhhhhccchh
Confidence            34456654      24678999999999999999988877654

>d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Hypothetical methyltransferase TM1389
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.00072  Score=49.56  Aligned_cols=28  Identities=21%  Similarity=0.166  Sum_probs=23.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..++++|||+|||+|.....++..+...
T Consensus        40 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v   67 (246)
T d2avna1          40 LKNPCRVLDLGGGTGKWSLFLQERGFEV   67 (246)
T ss_dssp             CCSCCEEEEETCTTCHHHHHHHTTTCEE
T ss_pred             cCCCCEEEEECCCCchhcccccccceEE
Confidence            3467899999999999999999887543

>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Hypothetical methyltransferase PH1305
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=96.68  E-value=0.00045  Score=51.36  Aligned_cols=27  Identities=11%  Similarity=0.042  Sum_probs=22.8

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      -++++|||+|||||...+.++..+...
T Consensus        40 ~~~~~iLDiGcGtG~~~~~l~~~~~~v   66 (251)
T d1wzna1          40 REVRRVLDLACGTGIPTLELAERGYEV   66 (251)
T ss_dssp             SCCCEEEEETCTTCHHHHHHHHTTCEE
T ss_pred             CCCCEEEEeCCCCCccchhhcccceEE
Confidence            456799999999999999999887643

>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: CAC2371-like
domain: Putative methyltransferase CAC2371
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=96.50  E-value=0.00066  Score=50.76  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=24.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      ..++++|||+|||+|...+.++..+...
T Consensus        35 ~~~~~~vLDiGCG~G~~~~~l~~~g~~v   62 (246)
T d1y8ca_          35 NLVFDDYLDLACGTGNLTENLCPKFKNT   62 (246)
T ss_dssp             TCCTTEEEEETCTTSTTHHHHGGGSSEE
T ss_pred             CCCCCeEEEEeCcCCHHHHHHHHhCCcc
Confidence            4567899999999999999999988654

>d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Thiopurine S-methyltransferase
domain: Thiopurine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.48  E-value=0.001  Score=49.63  Aligned_cols=44  Identities=11%  Similarity=-0.049  Sum_probs=34.0

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ....|.+|+.+..    ..-++.+||++|||.|...+.+|..|..+.+
T Consensus        29 ~~~~l~~~~~~~l----~~~~~~rvLd~GCG~G~~a~~LA~~G~~V~g   72 (229)
T d2bzga1          29 GHQLLKKHLDTFL----KGKSGLRVFFPLCGKAVEMKWFADRGHSVVG   72 (229)
T ss_dssp             CCHHHHHHHHHHH----TTCCSCEEEETTCTTCTHHHHHHHTTCEEEE
T ss_pred             CCHHHHHHHHHhc----CCCCCCEEEEeCCCCcHHHHHHHhCCCcEEE
Confidence            3566777777631    2347789999999999999999999876543

>d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Escherichia coli [TaxId: 562]

Probab=96.42  E-value=0.00087  Score=50.87  Aligned_cols=26  Identities=31%  Similarity=0.525  Sum_probs=23.7

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +.+++|+++|||.|++||.+|.+.|.
T Consensus        64 ~~~~~ilDiGsGaG~PGi~laI~~p~   89 (207)
T d1jsxa_          64 LQGERFIDVGTGPGLPGIPLSIVRPE   89 (207)
T ss_dssp             CCSSEEEEETCTTTTTHHHHHHHCTT
T ss_pred             hcCCceeeeeccCCceeeehhhhccc
Confidence            46789999999999999999999886

>d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Guanidinoacetate methyltransferase
domain: Guanidinoacetate methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.32  E-value=0.00069  Score=50.87  Aligned_cols=26  Identities=15%  Similarity=0.189  Sum_probs=21.9

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -+|++|||+|||+|.....++...+.
T Consensus        52 ~~g~~VLdIGcG~G~~a~~~a~~~~~   77 (229)
T d1zx0a1          52 SKGGRVLEVGFGMAIAASKVQEAPID   77 (229)
T ss_dssp             TTCEEEEEECCTTSHHHHHHHTSCEE
T ss_pred             cCCCeEEEeeccchHHHHHHHHcCCC
Confidence            46889999999999999988876543

>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Putative sarcosine dimethylglycine methyltransferase
species: Red algae (Galdieria sulphuraria) [TaxId: 130081]

Probab=96.31  E-value=0.0018  Score=49.55  Aligned_cols=25  Identities=28%  Similarity=0.385  Sum_probs=21.0

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .+-++.+|||+|||+|-..+.++..
T Consensus        64 ~l~~~~~vLDiGcG~G~~~~~la~~   88 (282)
T d2o57a1          64 VLQRQAKGLDLGAGYGGAARFLVRK   88 (282)
T ss_dssp             CCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             CCCCCCEEEEeCCCCcHHHhhhhcc
Confidence            4457899999999999998888764

>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TehB-like
domain: Putative methyltransferase TehB
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.24  E-value=0.0012  Score=47.90  Aligned_cols=28  Identities=14%  Similarity=0.166  Sum_probs=23.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .+++.+|||||||+|...+.++..+...
T Consensus        28 ~~~~grvLDiGcG~G~~~~~la~~g~~v   55 (198)
T d2i6ga1          28 VVAPGRTLDLGCGNGRNSLYLAANGYDV   55 (198)
T ss_dssp             TSCSCEEEEETCTTSHHHHHHHHTTCEE
T ss_pred             cCCCCcEEEECCCCCHHHHHHHHHhhhh
Confidence            3566799999999999999999887654

>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical Protein YjhP
domain: Hypothetical Protein YjhP
species: Escherichia coli [TaxId: 562]

Probab=96.13  E-value=0.0027  Score=47.43  Aligned_cols=40  Identities=20%  Similarity=0.113  Sum_probs=28.2

Q ss_pred             echHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          100 WDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       100 W~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ++.+.-...+|...    ..+..|++|||+|||+|-..+.++.-
T Consensus        15 ~p~~~~~~~~l~~~----~~l~pg~~VLDiGCG~G~~~~~la~~   54 (245)
T d1nkva_          15 NPFTEEKYATLGRV----LRMKPGTRILDLGSGSGEMLCTWARD   54 (245)
T ss_dssp             SSCCHHHHHHHHHH----TCCCTTCEEEEETCTTCHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHH----cCCCCCCEEEEEcCCCCHHHHHHHHh
Confidence            44455555556653    23566899999999999888877764

>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=96.12  E-value=0.0017  Score=48.02  Aligned_cols=25  Identities=12%  Similarity=0.161  Sum_probs=20.8

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .-++.+|||||||+|...+.++...
T Consensus        37 ~~~~~~vLDlGCGtG~~~~~l~~~~   61 (225)
T d1im8a_          37 VTADSNVYDLGCSRGAATLSARRNI   61 (225)
T ss_dssp             CCTTCEEEEESCTTCHHHHHHHHTC
T ss_pred             cCCCCEEEEeccchhhHHHHHHHhh
Confidence            3467899999999999999888754

>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glycine N-methyltransferase
domain: Glycine N-methyltransferase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.10  E-value=0.0013  Score=50.77  Aligned_cols=26  Identities=8%  Similarity=0.069  Sum_probs=22.4

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .+++|||||||+|..++.++..|..+
T Consensus        56 ~~~~vLD~GcG~G~~~~~la~~g~~v   81 (292)
T d1xvaa_          56 GCHRVLDVACGTGVDSIMLVEEGFSV   81 (292)
T ss_dssp             TCCEEEESSCTTSHHHHHHHHTTCEE
T ss_pred             CCCEEEEecCCCcHHHHHHHHcCCee
Confidence            46899999999999999999887544

>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: BC2162-like
domain: Methyltransferase BC2162
species: Bacillus cereus [TaxId: 1396]

Probab=95.99  E-value=0.0036  Score=48.22  Aligned_cols=36  Identities=28%  Similarity=0.406  Sum_probs=26.6

Q ss_pred             HHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          107 GKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       107 a~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+||....   ....++++|||+|||+|..++.++.+.+
T Consensus        15 l~~l~~~~---~~~~~~~~ILDiGcG~G~~~~~la~~~~   50 (281)
T d2gh1a1          15 VSFLVNTV---WKITKPVHIVDYGCGYGYLGLVLMPLLP   50 (281)
T ss_dssp             HHHHHHTT---SCCCSCCEEEEETCTTTHHHHHHTTTSC
T ss_pred             HHHHHHHH---hccCCcCEEEEecCcCCHHHHHHHHhCC
Confidence            45555431   2345678999999999999999988755

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=95.86  E-value=0.0041  Score=47.39  Aligned_cols=30  Identities=23%  Similarity=0.393  Sum_probs=25.3

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      .-+|.+|||+|||+|-...++|.++..+++
T Consensus        68 l~~g~~VLdIG~GsGy~ta~La~l~~~V~a   97 (224)
T d1vbfa_          68 LHKGQKVLEIGTGIGYYTALIAEIVDKVVS   97 (224)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHSSEEEE
T ss_pred             hcccceEEEecCCCCHHHHHHHHHhccccc
Confidence            457889999999999999999998876553

>d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=95.78  E-value=0.006  Score=45.54  Aligned_cols=48  Identities=15%  Similarity=0.165  Sum_probs=32.1

Q ss_pred             ceeeechHH-HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904           96 GSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus        96 G~~vW~asi-~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      |+..|+.-. -||..+....  .-..-+|.+|||||||+|.....+|.+.+
T Consensus        31 ~~r~w~p~rsklaa~i~~g~--~l~lkpg~~VLDlGcG~G~~~~~la~~v~   79 (209)
T d1nt2a_          31 GYREWVPWRSKLAAMILKGH--RLKLRGDERVLYLGAASGTTVSHLADIVD   79 (209)
T ss_dssp             TEEECCGGGCHHHHHHHTSC--CCCCCSSCEEEEETCTTSHHHHHHHHHTT
T ss_pred             ceeeeCCcchHHHHHHhccc--cCCCCCCCEEEEeCCcCCHHHHHHHHhcc
Confidence            578888432 3444444421  12344689999999999998888887654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=95.77  E-value=0.0046  Score=46.14  Aligned_cols=25  Identities=24%  Similarity=0.434  Sum_probs=21.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .-+|.+|||+|||+|-.+..+|++.
T Consensus        73 l~~g~~VLdiG~GtG~~s~~la~~~   97 (213)
T d1dl5a1          73 LDKGMRVLEIGGGTGYNAAVMSRVV   97 (213)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHH
T ss_pred             ccccceEEEecCccchhHHHHHHHh
Confidence            4578999999999999999888754

>d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Escherichia coli [TaxId: 562]

Probab=95.52  E-value=0.008  Score=47.08  Aligned_cols=25  Identities=28%  Similarity=0.429  Sum_probs=22.0

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ++.+|||||||+|..+|.+++..|.
T Consensus       108 ~~~~vlDlGtGSG~I~i~la~~~p~  132 (274)
T d2b3ta1         108 QPCRILDLGTGTGAIALALASERPD  132 (274)
T ss_dssp             SCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cccceeeeehhhhHHHHHHHhhCCc
Confidence            4578999999999999999987765

>d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Indolethylamine N-methyltransferase, INMT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.51  E-value=0.0012  Score=49.14  Aligned_cols=27  Identities=19%  Similarity=0.285  Sum_probs=21.1

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ...+|++|||||||+|..++.++.-+.
T Consensus        48 ~~~~g~~vLDlGcG~G~~~~~~~~~~~   74 (257)
T d2a14a1          48 GGLQGDTLIDIGSGPTIYQVLAACDSF   74 (257)
T ss_dssp             TSCCEEEEEESSCTTCCGGGTTGGGTE
T ss_pred             cCCCCCEEEEECCCCCHhHHHHhcccc
Confidence            446788999999999998877665443

>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: mRNA cap (Guanine N-7) methyltransferase
domain: mRNA cap (Guanine N-7) methyltransferase
species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]

Probab=95.40  E-value=0.0044  Score=46.59  Aligned_cols=27  Identities=19%  Similarity=-0.009  Sum_probs=20.8

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .-++++|||||||+|-...-++..+..
T Consensus        22 ~~~~~~VLDlGCG~G~~~~~~~~~~~~   48 (252)
T d1ri5a_          22 TKRGDSVLDLGCGKGGDLLKYERAGIG   48 (252)
T ss_dssp             CCTTCEEEEETCTTTTTHHHHHHHTCS
T ss_pred             CCCcCEEEEecccCcHHHHHHHHcCCC
Confidence            346889999999999776666666543

>d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Methylase YhhF
species: Escherichia coli [TaxId: 562]

Probab=95.39  E-value=0.0037  Score=45.61  Aligned_cols=27  Identities=19%  Similarity=0.283  Sum_probs=23.7

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+++||+|+||+|..||-|+.-|+.
T Consensus        41 ~~~~~~vLDlfaGsG~~giealsrGa~   67 (183)
T d2fpoa1          41 VIVDAQCLDCFAGSGALGLEALSRYAA   67 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCS
T ss_pred             ccchhhhhhhhccccceeeeEEecCcc
Confidence            478899999999999999988877765

>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Adrenal gland protein AD-003 (C9orf32)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.36  E-value=0.006  Score=44.83  Aligned_cols=22  Identities=14%  Similarity=0.055  Sum_probs=17.3

Q ss_pred             ccCCCeEEEeCCCCChhHHHHh
Q 031904          120 LLHGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa  141 (150)
                      ...+++|||||||+|-....++
T Consensus        58 ~~~~~~vLDiGcG~G~~~~~l~   79 (222)
T d2ex4a1          58 KTGTSCALDCGAGIGRITKRLL   79 (222)
T ss_dssp             CCCCSEEEEETCTTTHHHHHTT
T ss_pred             CCCCCEEEEeccCCCHhhHHHH
Confidence            3456899999999998776544

>d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=95.32  E-value=0.0051  Score=46.73  Aligned_cols=50  Identities=16%  Similarity=0.205  Sum_probs=33.7

Q ss_pred             ceeeechHH-HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904           96 GSVMWDSGV-VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus        96 G~~vW~asi-~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+..|+.-. -||.-|.... +.-..-+|.+||+||||+|.....+|..++.
T Consensus        48 e~r~w~p~rsklaA~i~~gl-~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~   98 (230)
T d1g8sa_          48 EYRIWNPNKSKLAAAIIKGL-KVMPIKRDSKILYLGASAGTTPSHVADIADK   98 (230)
T ss_dssp             EEEECCTTTCHHHHHHHTTC-CCCCCCTTCEEEEESCCSSHHHHHHHHHTTT
T ss_pred             eeeeECCCccHHHHHHHhhH-HhCCCCCCCEEEEeCEEcCHHHHHHHHhCCC
Confidence            678888633 4444444321 0112346899999999999999988887754

>d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Glucose-inhibited division protein B (GidB)
domain: Glucose-inhibited division protein B (GidB)
species: Bacillus subtilis [TaxId: 1423]

Probab=95.05  E-value=0.0063  Score=47.03  Aligned_cols=25  Identities=20%  Similarity=0.331  Sum_probs=22.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+++|+++|+|.|++||++|.+.|.
T Consensus        70 ~~~~ilDiGSGaGfPGi~laI~~p~   94 (239)
T d1xdza_          70 QVNTICDVGAGAGFPSLPIKICFPH   94 (239)
T ss_dssp             GCCEEEEECSSSCTTHHHHHHHCTT
T ss_pred             CCCeEEeecCCCchHHHHHHHhCCC
Confidence            4679999999999999999998775

>d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase EF2452
species: Enterococcus faecalis [TaxId: 1351]

Probab=95.02  E-value=0.0066  Score=44.37  Aligned_cols=27  Identities=22%  Similarity=0.130  Sum_probs=24.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.|++||||.||+|..|+-++.-|+.
T Consensus        39 ~~~~~~vLDlfaGsG~~g~ea~srGa~   65 (182)
T d2fhpa1          39 YFDGGMALDLYSGSGGLAIEAVSRGMD   65 (182)
T ss_dssp             CCSSCEEEETTCTTCHHHHHHHHTTCS
T ss_pred             hcCCCEEEEcccccccccceeeecchh
Confidence            468999999999999999988887765

>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Carminomycin 4-O-methyltransferase
species: Streptomyces peucetius [TaxId: 1950]

Probab=94.70  E-value=0.0094  Score=44.92  Aligned_cols=25  Identities=16%  Similarity=0.282  Sum_probs=21.6

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..++|||+|||+|...+.++...|.
T Consensus        80 ~~~~VLDvGcG~G~~~~~la~~~p~  104 (253)
T d1tw3a2          80 NVRHVLDVGGGKGGFAAAIARRAPH  104 (253)
T ss_dssp             TCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             cCCEEEEeCCCCCHHHHHHHHhcce
Confidence            3489999999999999999987765

>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: Methoxy mycolic acid synthase 4, Mma4
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.62  E-value=0.014  Score=45.24  Aligned_cols=25  Identities=20%  Similarity=0.304  Sum_probs=20.7

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhc
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..-+|.+|||+|||+|-+.+.++..
T Consensus        49 ~l~~g~~VLDiGCG~G~~a~~~a~~   73 (280)
T d2fk8a1          49 DLKPGMTLLDIGCGWGTTMRRAVER   73 (280)
T ss_dssp             CCCTTCEEEEESCTTSHHHHHHHHH
T ss_pred             CCCCCCEEEEecCCchHHHHHHHHh
Confidence            3456899999999999888877765

>d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Arylamine N-methyltransferase
domain: Phenylethanolamine N-methyltransferase, PNMTase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.60  E-value=0.0057  Score=46.60  Aligned_cols=23  Identities=17%  Similarity=0.388  Sum_probs=18.5

Q ss_pred             cccCCCeEEEeCCCCChhHHHHh
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa  141 (150)
                      ...+|++|||+|||+|+..+..+
T Consensus        51 g~~~g~~vLDiGcG~g~~~~~~~   73 (263)
T d2g72a1          51 GEVSGRTLIDIGSGPTVYQLLSA   73 (263)
T ss_dssp             SCSCCSEEEEETCTTCCGGGTTG
T ss_pred             CCCCCcEEEEeccCCCHHHHHHh
Confidence            45789999999999998775433

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=94.56  E-value=0.018  Score=44.59  Aligned_cols=25  Identities=20%  Similarity=0.428  Sum_probs=21.8

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .-.|.+|||+|||+|...+.+|...
T Consensus       101 i~pG~~VLDiG~GsG~lt~~lA~~~  125 (266)
T d1o54a_         101 VKEGDRIIDTGVGSGAMCAVLARAV  125 (266)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHT
T ss_pred             CCCCCEEEECCCCCCHHHHHHHHHh
Confidence            4578999999999999999998754

>d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA2
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.50  E-value=0.016  Score=45.37  Aligned_cols=37  Identities=16%  Similarity=0.240  Sum_probs=26.6

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhh
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~  142 (150)
                      |-.-..+++.+.    ...-.|.+|||+|||.|-+.+-+|.
T Consensus        45 Aq~~k~~~~~~~----l~l~~G~~VLDiGCG~G~~~~~~a~   81 (291)
T d1kpia_          45 AQYAKRKLALDK----LNLEPGMTLLDIGCGWGSTMRHAVA   81 (291)
T ss_dssp             HHHHHHHHHHHT----TCCCTTCEEEEETCTTSHHHHHHHH
T ss_pred             HHHHHHHHHHHh----cCCCCCCEEEEecCcchHHHHHHHH
Confidence            444555666653    3456789999999999988886654

>d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Mycolic acid cyclopropane synthase
domain: CmaA1
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=94.50  E-value=0.018  Score=44.96  Aligned_cols=39  Identities=13%  Similarity=0.169  Sum_probs=28.7

Q ss_pred             chHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904          101 DSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       101 ~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .|-.-+.+++...    ...-+|.+|||+|||.|-+.+-+|+.
T Consensus        45 eAQ~~k~~~~~~~----l~l~~G~~VLDiGCG~G~~a~~~a~~   83 (285)
T d1kpga_          45 EAQIAKIDLALGK----LGLQPGMTLLDVGCGWGATMMRAVEK   83 (285)
T ss_dssp             HHHHHHHHHHHTT----TTCCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH----cCCCCCCEEEEecCcchHHHHHHHhc
Confidence            3555666777764    24567899999999999999865553

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.41  E-value=0.011  Score=44.58  Aligned_cols=24  Identities=29%  Similarity=0.504  Sum_probs=19.9

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      .-+|.+|||+|||+|-...++|.+
T Consensus        74 l~~g~~VLdiG~GsGy~ta~la~l   97 (224)
T d1i1na_          74 LHEGAKALDVGSGSGILTACFARM   97 (224)
T ss_dssp             SCTTCEEEEETCTTSHHHHHHHHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHH
Confidence            456889999999999887777765

>d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA methyltransferase RlmA
domain: rRNA methyltransferase RlmA
species: Escherichia coli [TaxId: 562]

Probab=94.41  E-value=0.021  Score=43.51  Aligned_cols=26  Identities=15%  Similarity=0.262  Sum_probs=22.2

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++.+|||+|||+|.....++..++.
T Consensus        83 ~~~~~iLDiGcG~G~~~~~l~~~~~~  108 (268)
T d1p91a_          83 DKATAVLDIGCGEGYYTHAFADALPE  108 (268)
T ss_dssp             TTCCEEEEETCTTSTTHHHHHHTCTT
T ss_pred             CCCCEEEEeCCCCcHHHHHHHHHCCC
Confidence            46789999999999999888887764

>d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.20  E-value=0.023  Score=42.75  Aligned_cols=26  Identities=27%  Similarity=0.376  Sum_probs=22.2

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      ..-+|.+|||+|||||-...++|.+.
T Consensus        75 ~l~~g~~VLeIGsGsGY~taila~l~  100 (215)
T d1jg1a_          75 NLKPGMNILEVGTGSGWNAALISEIV  100 (215)
T ss_dssp             TCCTTCCEEEECCTTSHHHHHHHHHH
T ss_pred             ccCccceEEEecCCCChhHHHHHHhh
Confidence            35678899999999999999998763

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=94.14  E-value=0.013  Score=45.25  Aligned_cols=27  Identities=26%  Similarity=0.332  Sum_probs=22.3

Q ss_pred             cccCCCeEEEeCCCCChhHHHHhhc-CC
Q 031904          119 LLLHGKKIVELGSGCGLVGPFGCSS-YP  145 (150)
Q Consensus       119 ~~~~gk~VLELGaGtGL~Gi~aa~l-~~  145 (150)
                      ..-.|.+|||+|||+|..++.+|.. ++
T Consensus        82 ~i~pG~rVLEiG~GsG~lt~~la~~v~~  109 (250)
T d1yb2a1          82 GLRPGMDILEVGVGSGNMSSYILYALNG  109 (250)
T ss_dssp             CCCTTCEEEEECCTTSHHHHHHHHHHTT
T ss_pred             CCCCcCEEEEeeeeCcHHHHHHHHHhCC
Confidence            3467899999999999999888864 44

>d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Met-10+ protein-like
domain: Hypothetical protein PH0793
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.14  E-value=0.011  Score=45.55  Aligned_cols=26  Identities=12%  Similarity=-0.042  Sum_probs=23.1

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      -+|.+||+||||+|..+|.+|+.+..
T Consensus       106 ~~g~~VlD~~aG~G~~~l~~a~~~~~  131 (260)
T d2frna1         106 KPDELVVDMFAGIGHLSLPIAVYGKA  131 (260)
T ss_dssp             CTTCEEEETTCTTTTTHHHHHHHTCC
T ss_pred             CCccEEEECcceEcHHHHHHHHhCCc
Confidence            46899999999999999999988753

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=93.93  E-value=0.025  Score=44.00  Aligned_cols=26  Identities=23%  Similarity=0.436  Sum_probs=22.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc-CC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS-YP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l-~~  145 (150)
                      .-+|.+|||+|||+|-..+.+|.. +|
T Consensus        94 i~PG~~VLE~G~GsG~lt~~La~~vgp  120 (264)
T d1i9ga_          94 IFPGARVLEAGAGSGALTLSLLRAVGP  120 (264)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             CCCCCEEEecCcCCcHHHHHHHHhhCC
Confidence            357899999999999999999875 44

>d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein PH1915, middle and C-terminal domains
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=93.35  E-value=0.021  Score=45.09  Aligned_cols=25  Identities=8%  Similarity=0.053  Sum_probs=22.7

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +|++||+|+||+|..++.+++.|+.
T Consensus       145 ~g~~VLDl~~g~G~~si~~a~~ga~  169 (324)
T d2as0a2         145 PGDRVLDVFTYTGGFAIHAAIAGAD  169 (324)
T ss_dssp             TTCEEEETTCTTTHHHHHHHHTTCS
T ss_pred             CCCeeecccCcccchhhhhhhcCCc
Confidence            5899999999999999999988765

>d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.32  E-value=0.047  Score=41.00  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=21.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .-+|.+|||+|||+|-...++|.+.
T Consensus        78 l~~g~~VLeIGtGsGY~ta~la~l~  102 (223)
T d1r18a_          78 LKPGARILDVGSGSGYLTACFYRYI  102 (223)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             cCCCCeEEEecCCCCHHHHHHHHHh
Confidence            4578899999999998888887763

>d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein FLJ20628
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.16  E-value=0.033  Score=44.35  Aligned_cols=26  Identities=27%  Similarity=0.397  Sum_probs=22.0

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhc-CC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSS-YP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l-~~  145 (150)
                      ..+|.+|||+|||+|...+.+|.. ++
T Consensus        96 i~pG~rVLE~GtGsG~lt~~LAr~vg~  122 (324)
T d2b25a1          96 INPGDTVLEAGSGSGGMSLFLSKAVGS  122 (324)
T ss_dssp             CCTTCEEEEECCTTSHHHHHHHHHHCT
T ss_pred             CCCCCEEEEecccccHHHHHHHHHhCC
Confidence            457999999999999999988864 44

>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: UbiE/COQ5-like
domain: Possible histamine N-methyltransferase TM1293
species: Thermotoga maritima [TaxId: 2336]

Probab=93.15  E-value=0.021  Score=40.88  Aligned_cols=21  Identities=29%  Similarity=0.207  Sum_probs=16.0

Q ss_pred             cCCCeEEEeCCCCChhHHHHh
Q 031904          121 LHGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa  141 (150)
                      .++.+|||+|||+|.....++
T Consensus        35 ~~~~~vLDiGcG~G~~~~~~~   55 (208)
T d1vlma_          35 LPEGRGVEIGVGTGRFAVPLK   55 (208)
T ss_dssp             CCSSCEEEETCTTSTTHHHHT
T ss_pred             CCCCeEEEECCCCcccccccc
Confidence            445689999999997765543

>d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Bacillus subtilis [TaxId: 1423]

Probab=93.07  E-value=0.031  Score=41.50  Aligned_cols=24  Identities=21%  Similarity=0.174  Sum_probs=20.6

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +..|||+|||+|-..+.+|+..|.
T Consensus        30 ~PlvLeIGcG~G~~~~~lA~~~p~   53 (204)
T d2fcaa1          30 NPIHIEVGTGKGQFISGMAKQNPD   53 (204)
T ss_dssp             CCEEEEECCTTSHHHHHHHHHCTT
T ss_pred             CceEEEEEecCcHHHHHHHHhCCC
Confidence            447999999999999999888765

>d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Catechol O-methyltransferase, COMT
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=92.98  E-value=0.033  Score=41.51  Aligned_cols=25  Identities=20%  Similarity=0.262  Sum_probs=21.6

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .+.++|||+|||+|...+.+|...+
T Consensus        55 ~kpk~ILEiGt~~G~Sti~la~al~   79 (214)
T d2cl5a1          55 YSPSLVLELGAYCGYSAVRMARLLQ   79 (214)
T ss_dssp             HCCSEEEEECCTTSHHHHHHHTTCC
T ss_pred             hCCCEEEEEccCchhHHHHHHHhCC
Confidence            5678999999999999999987643

>d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: rRNA adenine dimethylase-like
domain: rRNA adenine dimethylase
species: Streptococcus pneumoniae, Ermam [TaxId: 1313]

Probab=92.91  E-value=0.014  Score=44.80  Aligned_cols=29  Identities=14%  Similarity=0.087  Sum_probs=23.4

Q ss_pred             cCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          121 LHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      -.+.+|||+|||+|.+.-.++..+....|
T Consensus        28 ~~~d~VLEIGpG~G~LT~~L~~~~~~v~a   56 (245)
T d1yuba_          28 KETDTVYEIGTGKGHLTTKLAKISKQVTS   56 (245)
T ss_dssp             CSSEEEEECSCCCSSCSHHHHHHSSEEEE
T ss_pred             CCCCeEEEECCCccHHHHHHHhhcCceeE
Confidence            46779999999999998888887765543

>d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: COMT domain-containing protein 1, COMTD1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.63  E-value=0.051  Score=40.73  Aligned_cols=39  Identities=21%  Similarity=0.255  Sum_probs=28.4

Q ss_pred             HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          103 GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       103 si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      +..-++||..-    -...+.|+|||+|+|+|..++.+|.-.+
T Consensus        44 ~~~~g~lL~~L----~~~~~~k~vLEiGt~~GyStl~~a~al~   82 (219)
T d2avda1          44 TCEQAQLLANL----ARLIQAKKALDLGTFTGYSALALALALP   82 (219)
T ss_dssp             CHHHHHHHHHH----HHHTTCCEEEEECCTTSHHHHHHHTTSC
T ss_pred             CHHHHHHHHHH----HHccCCCeEEEEechhhHHHHHHHHhCC
Confidence            34455555542    1246779999999999999999987654

>d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: AD-003 protein-like
domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810)
species: Leishmania major [TaxId: 5664]

Probab=92.03  E-value=0.03  Score=42.38  Aligned_cols=21  Identities=14%  Similarity=0.170  Sum_probs=16.5

Q ss_pred             cCCCeEEEeCCCCChhHHHHh
Q 031904          121 LHGKKIVELGSGCGLVGPFGC  141 (150)
Q Consensus       121 ~~gk~VLELGaGtGL~Gi~aa  141 (150)
                      ..+++|||+|||+|-+..-++
T Consensus        92 ~~~~~vLD~GcG~G~~t~~ll  112 (254)
T d1xtpa_          92 HGTSRALDCGAGIGRITKNLL  112 (254)
T ss_dssp             CCCSEEEEETCTTTHHHHHTH
T ss_pred             CCCCeEEEecccCChhhHHHH
Confidence            356799999999998776443

>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Histamine methyltransferase
domain: Histamine methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.90  E-value=0.039  Score=41.47  Aligned_cols=18  Identities=33%  Similarity=0.453  Sum_probs=14.5

Q ss_pred             eEEEeCCCCChhHHHHhh
Q 031904          125 KIVELGSGCGLVGPFGCS  142 (150)
Q Consensus       125 ~VLELGaGtGL~Gi~aa~  142 (150)
                      +|||+|||+|.....++.
T Consensus        43 ~VLDiGcG~G~~~~~ll~   60 (280)
T d1jqea_          43 KILSIGGGAGEIDLQILS   60 (280)
T ss_dssp             EEEEETCTTSHHHHHHHH
T ss_pred             eEEEEcCCCCHHHHHHHH
Confidence            799999999987665543

>d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Methyltransferase 10 domain
domain: Methyltransferase 10 domain containing protein METT10D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.88  E-value=0.072  Score=40.47  Aligned_cols=23  Identities=13%  Similarity=0.346  Sum_probs=19.5

Q ss_pred             CCCeEEEeCCCCChhHHHHhhcC
Q 031904          122 HGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       122 ~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      +..+|||||||+|..++++++-.
T Consensus        61 ~~~~~LDiGtGsg~I~~~l~~~~   83 (250)
T d2h00a1          61 TLRRGIDIGTGASCIYPLLGATL   83 (250)
T ss_dssp             CCCEEEEESCTTTTHHHHHHHHH
T ss_pred             ccceEEEeCCCchHHHHHHHHhC
Confidence            44699999999999999988753

>d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein TTHA1280, middle and C-terminal domains
species: Thermus thermophilus [TaxId: 274]

Probab=91.83  E-value=0.021  Score=45.00  Aligned_cols=26  Identities=12%  Similarity=0.116  Sum_probs=21.8

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+|++||+|+||+|..++.+|.-+.
T Consensus       143 ~~~g~rVLDl~~gtG~~s~~~a~g~~  168 (318)
T d1wxxa2         143 RFRGERALDVFSYAGGFALHLALGFR  168 (318)
T ss_dssp             GCCEEEEEEETCTTTHHHHHHHHHEE
T ss_pred             HhCCCeeeccCCCCcHHHHHHHhcCC
Confidence            35799999999999999998876443

>d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Putative methyltransferase Atu0340
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=91.81  E-value=0.047  Score=43.36  Aligned_cols=68  Identities=13%  Similarity=0.020  Sum_probs=40.1

Q ss_pred             eEEEeecCceEEEEecCCCCCCCCccceeeechHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcc
Q 031904           70 NLRIDACGHSLSILQSPSSLGTPGVTGSVMWDSGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYR  147 (150)
Q Consensus        70 ~l~~~~~g~~l~I~Q~~ss~~~~g~tG~~vW~asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~  147 (150)
                      .+.+..+|.++.|.-..     ...||..+  --...=+|+....   ...-++++||+|.||||..++.++.-|..+
T Consensus        90 ~~~v~e~gl~f~v~~~~-----~~~tG~f~--dqr~nr~~~~~~~---~~~~~~~rVLdlf~~tG~~sl~aa~~GA~V  157 (309)
T d2igta1          90 TWPLSLLGVEFLGRFTA-----FRHVGVFP--EQIVHWEWLKNAV---ETADRPLKVLNLFGYTGVASLVAAAAGAEV  157 (309)
T ss_dssp             EEEEEETTEEEEEECCS-----SSCCSCCG--GGHHHHHHHHHHH---HHSSSCCEEEEETCTTCHHHHHHHHTTCEE
T ss_pred             eEEEEEeEEEEEEeccC-----CCcccccc--chhHHHHHHHHHH---hhccCCCeEEEecCCCcHHHHHHHhCCCeE
Confidence            45666777666666432     34466521  0011111222211   113468999999999999999999887653

>d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Fibrillarin homologue
domain: Fibrillarin homologue
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=91.65  E-value=0.051  Score=40.99  Aligned_cols=47  Identities=17%  Similarity=0.341  Sum_probs=30.1

Q ss_pred             cceeeech--HHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhc
Q 031904           95 TGSVMWDS--GVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSS  143 (150)
Q Consensus        95 tG~~vW~a--si~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l  143 (150)
                      ..+..|+-  | -||-.|.... +.-..-+|.+|||||||+|-....+|..
T Consensus        46 ~e~R~w~p~rS-Klaa~i~~~l-~~l~i~pG~~VLDlGaGsG~~t~~la~~   94 (227)
T d1g8aa_          46 EEYRIWNPNRS-KLGAAIMNGL-KNFPIKPGKSVLYLGIASGTTASHVSDI   94 (227)
T ss_dssp             EEEEECCTTTC-HHHHHHHTTC-CCCCCCTTCEEEEETTTSTTHHHHHHHH
T ss_pred             eeEEEECCCcc-HHHHHHHccc-cccccCCCCEEEEeccCCCHHHHHHHHH
Confidence            36788875  2 2333344321 0122457899999999999988877764

>d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.59  E-value=0.072  Score=43.76  Aligned_cols=25  Identities=28%  Similarity=0.387  Sum_probs=20.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .-+|.+|||||||+|-+-+.+|...
T Consensus       214 Lkpgd~fLDLGCG~G~~vl~aA~~~  238 (406)
T d1u2za_         214 LKKGDTFMDLGSGVGNCVVQAALEC  238 (406)
T ss_dssp             CCTTCEEEEESCTTSHHHHHHHHHH
T ss_pred             CCCCCEEEeCCCCCcHHHHHHHHHc
Confidence            4678899999999998888777653

>d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Catalytic, N-terminal domain of histone methyltransferase Dot1l
domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.53  E-value=0.055  Score=42.51  Aligned_cols=26  Identities=27%  Similarity=0.305  Sum_probs=21.5

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      .-++.+|||||||+|-+.+.+|+..+
T Consensus       149 l~~~~~vlD~GcG~G~~~~~~a~~~~  174 (328)
T d1nw3a_         149 MTDDDLFVDLGSGVGQVVLQVAAATN  174 (328)
T ss_dssp             CCTTCEEEEETCTTSHHHHHHHHHCC
T ss_pred             CCCCCEEEEcCCCCCHHHHHHHHHhC
Confidence            34678999999999999998887644

>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Aclacinomycin-10-hydroxylase RdmB
species: Streptomyces purpurascens [TaxId: 1924]

Probab=91.37  E-value=0.063  Score=40.50  Aligned_cols=26  Identities=15%  Similarity=0.238  Sum_probs=22.1

Q ss_pred             cCC-CeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHG-KKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~g-k~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      |++ ++|||+|||+|...+.+++..|.
T Consensus        79 ~~~~~~vlDvG~G~G~~~~~l~~~~P~  105 (256)
T d1qzza2          79 WSAVRHVLDVGGGNGGMLAAIALRAPH  105 (256)
T ss_dssp             CTTCCEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CccCCEEEEECCCCCHHHHHHHHhhcC
Confidence            444 79999999999999999987765

>d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: hypothetical RNA methyltransferase
domain: Hypothetical protein SMu776, middle and C-terminal domains
species: Streptococcus mutans [TaxId: 1309]

Probab=90.52  E-value=0.074  Score=41.90  Aligned_cols=27  Identities=15%  Similarity=0.001  Sum_probs=23.6

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      ..+|++||+|.||+|-.||.++..|++
T Consensus       142 ~~~g~~VLdlf~~~G~~sl~aa~~ga~  168 (317)
T d2b78a2         142 SAAGKTVLNLFSYTAAFSVAAAMGGAM  168 (317)
T ss_dssp             TTBTCEEEEETCTTTHHHHHHHHTTBS
T ss_pred             hhCCCceeecCCCCcHHHHHHHhCCCc
Confidence            357999999999999999998887765

>d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: TrmB-like
domain: tRNA (guanine-N(7)-)-methyltransferase TrmB
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=90.43  E-value=0.093  Score=38.71  Aligned_cols=24  Identities=29%  Similarity=0.210  Sum_probs=20.1

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +..|||+|||+|-.-+.+|+..|.
T Consensus        32 ~plvLdIGcG~G~~~~~lA~~~p~   55 (204)
T d1yzha1          32 NPIHVEVGSGKGAFVSGMAKQNPD   55 (204)
T ss_dssp             CCEEEEESCTTSHHHHHHHHHCTT
T ss_pred             CCeEEEEeccCCHHHHHHHHHCCC
Confidence            347999999999888888887765

>d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: YhhF-like
domain: Putative methylase HI0767
species: Haemophilus influenzae [TaxId: 727]

Probab=90.17  E-value=0.077  Score=38.19  Aligned_cols=27  Identities=19%  Similarity=0.167  Sum_probs=24.1

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCCc
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .+.+++||||-||||.+|+=|..-|++
T Consensus        41 ~~~~~~vLDlFaGsG~~glEalSRGA~   67 (183)
T d2ifta1          41 YIHQSECLDGFAGSGSLGFEALSRQAK   67 (183)
T ss_dssp             HHTTCEEEETTCTTCHHHHHHHHTTCS
T ss_pred             hcccceEeecccCccceeeeeeeecce
Confidence            368899999999999999999987765

>d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: (Uracil-5-)-methyltransferase
domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain
species: Escherichia coli [TaxId: 562]

Probab=90.06  E-value=0.1  Score=40.61  Aligned_cols=44  Identities=7%  Similarity=-0.107  Sum_probs=30.4

Q ss_pred             hHHHHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcCCcccc
Q 031904          102 SGVVLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSYPYRFA  149 (150)
Q Consensus       102 asi~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~~~~~~  149 (150)
                      ..-.|.+++.+..    ...++.+||||-||+|..|+.+|.-+.++.|
T Consensus       196 ~~e~l~~~v~~~~----~~~~~~~vlDLycG~G~fsl~La~~~~~V~g  239 (358)
T d1uwva2         196 VNQKMVARALEWL----DVQPEDRVLDLFCGMGNFTLPLATQAASVVG  239 (358)
T ss_dssp             HHHHHHHHHHHHH----TCCTTCEEEEESCTTTTTHHHHHTTSSEEEE
T ss_pred             hhhHHHHHHHHhh----ccCCCceEEEecccccccchhccccccEEEe
Confidence            3444555554421    2335679999999999999999987766543

>d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: COMT-like
domain: Caffeoyl-CoA O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=88.37  E-value=0.13  Score=38.70  Aligned_cols=26  Identities=23%  Similarity=0.295  Sum_probs=22.2

Q ss_pred             ccCCCeEEEeCCCCChhHHHHhhcCC
Q 031904          120 LLHGKKIVELGSGCGLVGPFGCSSYP  145 (150)
Q Consensus       120 ~~~gk~VLELGaGtGL~Gi~aa~l~~  145 (150)
                      ..+.++|||+|+++|..++.+|.-.+
T Consensus        57 ~~~~k~iLEiGT~~GyStl~la~al~   82 (227)
T d1susa1          57 LINAKNTMEIGVYTGYSLLATALAIP   82 (227)
T ss_dssp             HHTCCEEEEECCGGGHHHHHHHHHSC
T ss_pred             hcCCCcEEEecchhhhhHHHHHhhCC
Confidence            35678999999999999999996554

>d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: N5-glutamine methyltransferase, HemK
domain: N5-glutamine methyltransferase, HemK
species: Thermotoga maritima [TaxId: 2336]

Probab=86.77  E-value=0.3  Score=37.62  Aligned_cols=36  Identities=17%  Similarity=0.187  Sum_probs=24.9

Q ss_pred             HHHHHHhhhhhcCccccCCCeEEEeCCCCChhHHHHhhcC
Q 031904          105 VLGKFLEHAVDSGMLLLHGKKIVELGSGCGLVGPFGCSSY  144 (150)
Q Consensus       105 ~La~~L~~~~~~~~~~~~gk~VLELGaGtGL~Gi~aa~l~  144 (150)
                      .|.+++....    .....++|+|+|||+|..+++++...
T Consensus        97 ~lv~~~~~~~----~~~~~~~vld~g~GsG~i~~~la~~~  132 (271)
T d1nv8a_          97 ELVELALELI----RKYGIKTVADIGTGSGAIGVSVAKFS  132 (271)
T ss_dssp             HHHHHHHHHH----HHHTCCEEEEESCTTSHHHHHHHHHS
T ss_pred             hhhhhhhhhh----ccccccEEEEeeeeeehhhhhhhhcc
Confidence            4555555432    12234689999999999999998754

>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=83.28  E-value=0.39  Score=35.68  Aligned_cols=24  Identities=38%  Similarity=0.490  Sum_probs=21.5

Q ss_pred             CCeEEEeCCCCChhHHHHhhcCCc
Q 031904          123 GKKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       123 gk~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      .++||++|||+|...+.++...|.
T Consensus        82 ~~~vvDvGGG~G~~~~~l~~~~P~  105 (243)
T d1kyza2          82 LKSLVDVGGGTGAVINTIVSKYPT  105 (243)
T ss_dssp             CSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             CcEEEEecCCCcHHHHHHHHHCCC
Confidence            478999999999999999988775

>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Plant O-methyltransferase, C-terminal domain
domain: Chalcone O-methyltransferase
species: Alfalfa (Medicago sativa) [TaxId: 3879]

Probab=80.11  E-value=0.53  Score=35.27  Aligned_cols=26  Identities=31%  Similarity=0.577  Sum_probs=22.2

Q ss_pred             cCC-CeEEEeCCCCChhHHHHhhcCCc
Q 031904          121 LHG-KKIVELGSGCGLVGPFGCSSYPY  146 (150)
Q Consensus       121 ~~g-k~VLELGaGtGL~Gi~aa~l~~~  146 (150)
                      +++ ++||++|||+|...+.+++-.|.
T Consensus        79 f~~~~~vlDiGGG~G~~~~~l~~~~P~  105 (244)
T d1fp1d2          79 FEGISTLVDVGGGSGRNLELIISKYPL  105 (244)
T ss_dssp             TTTCSEEEEETCTTSHHHHHHHHHCTT
T ss_pred             ccCCcEEEEecCCCcHHHHHHHHHCCC
Confidence            454 79999999999999999887765