Citrus Sinensis ID: 031998

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHcccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNHVAGMEEQIVSERMRRKLEEVNAAAQAHlapvqdhvNFTLQQAYFKCAYECFDRTRKQEEISncvehcsvpvvRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVnqsiddniktlpPLVERLKTQFSIKD
Flexible Loop (DISEMBL)
mnhvagmeeqIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQsiddniktlpplverlktqfsikd
Low Complexity Region (SEG)
MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD
Disordered region (IsUnstruct)
**************************AQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLV***********
Disordered Region (DISOPRED)
****************************AHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVC*********************SCVNQSIDDNIKTLPPLVERL*TQF****
Disordered Region (DISEMBL)
MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD
Disordered Region (DISPRO)
*********QIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	149	2.2.26 [Sep-21-2011]
Q96C01	138	Protein FAM136A OS=Homo s	yes	no	0.677	0.731	0.310	4e-10
Q9CR98	138	Protein FAM136A OS=Mus mu	yes	no	0.704	0.760	0.289	4e-10
Q2HJI3	138	Protein FAM136A OS=Bos ta	yes	no	0.704	0.760	0.289	5e-10
B0BN94	138	Protein FAM136A OS=Rattus	yes	no	0.704	0.760	0.289	1e-09
Q6PBU0	138	Protein FAM136A OS=Danio	yes	no	0.691	0.746	0.284	3e-09
P30629	143	Uncharacterized protein Z	yes	no	0.657	0.685	0.3	1e-08
A4QNC6	138	Protein FAM136A OS=Xenopu	yes	no	0.704	0.760	0.283	5e-08
Q63ZH8	138	Protein FAM136A OS=Xenopu	N/A	no	0.711	0.768	0.267	1e-07

>sp|Q96C01|F136A_HUMAN Protein FAM136A OS=Homo sapiens GN=FAM136A PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 2/103 (1%)

Query: 42  LQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+  C  D     +++  C+E C VP+ +AQ    +E+ KFQ+RL R  M C 
Sbjct: 28  MQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCN 87

Query: 101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLK 142
           DK  +S       ++    L+SCV + +DD++  +P + +++K
Sbjct: 88  DKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIPTMTKKMK 130

Homo sapiens (taxid: 9606)

>sp|Q9CR98|F136A_MOUSE Protein FAM136A OS=Mus musculus GN=Fam136a PE=1 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 59/107 (55%), Gaps = 2/107 (1%)

Query: 42  LQQAYFKCAYECFDRTR-KQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+  C + T+   +++  C+E C  P+ +AQ    +E+ +FQ+RL R  M C 
Sbjct: 28  MQGLMFRCSANCCEDTQASMQQVHQCIERCHAPLAQAQALVTSELERFQDRLARCTMHCN 87

Query: 101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS 146
           DK  +S       ++    L+SCV + +DD++  +P + +++K   S
Sbjct: 88  DKAKDSMDAGTKELQVKRQLDSCVTKCVDDHMHLIPTMTKKMKESLS 134

Mus musculus (taxid: 10090)

>sp|Q2HJI3|F136A_BOVIN Protein FAM136A OS=Bos taurus GN=FAM136A PE=2 SV=1

 Score = 63.2 bits (152), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 42  LQQAYFKCAYECFDRTR-KQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+  C + ++   +++  C+E C  P+ +AQ    +E+ KFQ+RL R  M C 
Sbjct: 28  MQGLMFRCSAACCEESQASMQQVHQCIERCHAPLAQAQALVTSELEKFQDRLARCTMYCN 87

Query: 101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS 146
           DK  +S       +     LE+CV + +DD++  +P +  ++K   S
Sbjct: 88  DKAKDSIDAGSKELHVKRQLETCVTKCVDDHMNLIPTMTRKMKESLS 134

Bos taurus (taxid: 9913)

>sp|B0BN94|F136A_RAT Protein FAM136A OS=Rattus norvegicus GN=Fam136a PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 57/107 (53%), Gaps = 2/107 (1%)

Query: 42  LQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+  C  D     +++  C+E C  P+ +AQ    +E+ +FQ+RL R  M C 
Sbjct: 28  MQGLMFRCSANCCEDNQASMQQVHQCIERCHAPLAQAQALVTSELERFQDRLARCTMHCN 87

Query: 101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS 146
           DK  +S       ++    L+SCV + +DD++  +P + +++K   S
Sbjct: 88  DKAKDSMDAGSKELQVKRQLDSCVAKCVDDHMHLIPTMTKKIKESLS 134

Rattus norvegicus (taxid: 10116)

>sp|Q6PBU0|F136A_DANRE Protein FAM136A OS=Danio rerio GN=fam136a PE=2 SV=1

 Score = 60.5 bits (145), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 31/109 (28%), Positives = 57/109 (52%), Gaps = 6/109 (5%)

Query: 42  LQQAYFKCAYECFDR-TRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+ EC +       ++  C+E C  P+ +AQ    +E+ +FQ+RL+R  M C 
Sbjct: 28  MQGRMFRCSAECCEHPGNSMNQVHQCIERCHTPLAKAQGLVTSELEQFQDRLSRCTMHCS 87

Query: 101 DKYE---SAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS 146
           DK +    +  ++  + A+ D   CV   +D+++  LP +  RLK   +
Sbjct: 88  DKAKDLFDSGAKEPAVRALMD--GCVGSCVDEHLNLLPSMTRRLKDSLN 134

Danio rerio (taxid: 7955)

>sp|P30629|YOU2_CAEEL Uncharacterized protein ZK637.2 OS=Caenorhabditis elegans GN=ZK637.2 PE=3 SV=2

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 33/110 (30%), Positives = 60/110 (54%), Gaps = 12/110 (10%)

Query: 42  LQQAYFKCAYECFDRTRK-QEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q++ F+C+  C D  +  ++ + NCVE C+  + +AQ + E E+   Q++L+R  M C 
Sbjct: 32  MQKSMFQCSARCCDNKKTTRDAVENCVESCNDGMKKAQGYLEKELGGLQDQLSRCAMTCY 91

Query: 101 DKY---------ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERL 141
           DK          + ++ QK+       L+SCV+   DD+IK +P + +R 
Sbjct: 92  DKLVQQFGPDVNKYSESQKLSFN--EKLDSCVSVCADDHIKLIPAIKKRF 139

Caenorhabditis elegans (taxid: 6239)

>sp|A4QNC6|F136A_XENTR Protein FAM136A OS=Xenopus tropicalis GN=fam136a PE=2 SV=1

 Score = 56.6 bits (135), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 32/113 (28%), Positives = 61/113 (53%), Gaps = 8/113 (7%)

Query: 42  LQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+ +C  D     +++ +C+E C  P+ +AQ    NE+ +FQ RL R  M C 
Sbjct: 28  MQGKMFRCSAQCCEDNGASMQQVHHCIERCHTPLAQAQSLVTNELERFQNRLARCTMHCN 87

Query: 101 DK----YESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           DK    ++S   ++  ++A   LE CV +  ++++  +P + ++LK   +  D
Sbjct: 88  DKAKDSFDSGS-KEAQVKA--QLEGCVIKCAEEHMNLIPSMTKKLKDALAQAD 137

Xenopus tropicalis (taxid: 8364)

>sp|Q63ZH8|F136A_XENLA Protein FAM136A OS=Xenopus laevis GN=fam136a PE=2 SV=1

 Score = 55.1 bits (131), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/112 (26%), Positives = 60/112 (53%), Gaps = 6/112 (5%)

Query: 42  LQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
           +Q   F+C+ +C  D     +++ +C+E C  P+ +AQ     E+ +FQ RL+R  M C 
Sbjct: 28  MQGKMFRCSAQCCEDNGASMQQVHHCIERCHTPLAQAQSLVTTELERFQNRLSRCTMNCS 87

Query: 101 DKYESA---KLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           D+ + A     ++  ++A   LE CV +  ++++  +P + ++LK   +  D
Sbjct: 88  DQAKDAFDSGSKEAQVKA--QLEGCVIKCAEEHMNLIPSMTKKLKDALAQAD 137

Xenopus laevis (taxid: 8355)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
255567784	149	conserved hypothetical protein [Ricinus	1.0	1.0	0.771	1e-64
224121780	153	predicted protein [Populus trichocarpa]	0.993	0.967	0.770	3e-63
18402744	149	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.744	3e-62
297826621	149	hypothetical protein ARALYDRAFT_482095 [	1.0	1.0	0.731	2e-61
297843360	149	hypothetical protein ARALYDRAFT_470580 [	1.0	1.0	0.718	4e-61
225431749	149	PREDICTED: protein FAM136A [Vitis vinife	1.0	1.0	0.765	7e-61
42561726	149	uncharacterized protein [Arabidopsis tha	1.0	1.0	0.724	2e-60
116830859	150	unknown [Arabidopsis thaliana]	1.0	0.993	0.724	2e-60
55978679	149	hypothetical protein AT1G05730 [Arabidop	1.0	1.0	0.718	8e-60
449435097	148	PREDICTED: uncharacterized protein ZK637	0.986	0.993	0.733	2e-58

>gi|255567784|ref|XP_002524870.1| conserved hypothetical protein [Ricinus communis] gi|223535833|gb|EEF37494.1| conserved hypothetical protein [Ricinus communis]

 Score =  250 bits (638), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 115/149 (77%), Positives = 133/149 (89%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+  +++Q+VSER+++KL EVN AAQ HL+PVQDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIEALQQQMVSERLKKKLNEVNTAAQTHLSPVQDHINFTLQQAYFKCAYECFDRQRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEI NCVEHCSVPVV AQQHFENEM+KFQERLNRSLMVCQDK+E+AKLQ+IG +AVN LE
Sbjct: 61  EEIGNCVEHCSVPVVSAQQHFENEMSKFQERLNRSLMVCQDKFEAAKLQQIGSDAVNALE 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCV+QSI D IKTLP LV RLKT  SI+D
Sbjct: 121 SCVDQSIQDTIKTLPHLVGRLKTSLSIRD 149

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121780|ref|XP_002330651.1| predicted protein [Populus trichocarpa] gi|222872255|gb|EEF09386.1| predicted protein [Populus trichocarpa]

 Score =  246 bits (627), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 114/148 (77%), Positives = 132/148 (89%)

Query: 2   NHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQE 61
           +H+A ME Q+VSERMRRKL EVN+AAQA L+PVQDH+NFTLQQAYFKCAYECFDR RKQE
Sbjct: 3   DHIAAMEAQMVSERMRRKLSEVNSAAQAQLSPVQDHINFTLQQAYFKCAYECFDRRRKQE 62

Query: 62  EISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLES 121
           EISNCVEHCSVPV+ AQ HFENEMAKFQERLNRSLMVCQD++E+AK Q++G +AVN LES
Sbjct: 63  EISNCVEHCSVPVLNAQNHFENEMAKFQERLNRSLMVCQDRFEAAKAQQLGSDAVNVLES 122

Query: 122 CVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           CV+QSI DN+KTLP LV R+K   +I+D
Sbjct: 123 CVDQSIQDNMKTLPHLVGRMKQSLAIRD 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18402744|ref|NP_565729.1| uncharacterized protein [Arabidopsis thaliana] gi|20197845|gb|AAM15277.1| expressed protein [Arabidopsis thaliana] gi|20198066|gb|AAM15381.1| expressed protein [Arabidopsis thaliana] gi|21554341|gb|AAM63448.1| unknown [Arabidopsis thaliana] gi|330253483|gb|AEC08577.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  243 bits (619), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 137/149 (91%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+A  EEQIVSER+RRKLEEVN AAQ  L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAAEEQIVSERLRRKLEEVNVAAQTQLSPIQDHINFTLQQAYFKCAYECFDRRRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEISNCVEHCSVPVV++QQ+FENEMA+FQERLNRSL+VCQDK+E++KLQKI  EAVN++E
Sbjct: 61  EEISNCVEHCSVPVVKSQQYFENEMAQFQERLNRSLVVCQDKFEASKLQKIRPEAVNEME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCV++SI++N+ TLP +V+R+KT F+I +
Sbjct: 121 SCVHKSIEENLNTLPHIVQRMKTAFNITN 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297826621|ref|XP_002881193.1| hypothetical protein ARALYDRAFT_482095 [Arabidopsis lyrata subsp. lyrata] gi|297327032|gb|EFH57452.1| hypothetical protein ARALYDRAFT_482095 [Arabidopsis lyrata subsp. lyrata]

 Score =  239 bits (610), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 109/149 (73%), Positives = 137/149 (91%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+A  EEQIVSER+RRKL+EVNAAAQ  L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHLAAAEEQIVSERLRRKLQEVNAAAQTQLSPIQDHINFTLQQAYFKCAYECFDRRRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEISNCVEHCSVPVV++QQ+FENEMA+FQERLNRSL+VCQDK+E++KLQKI  EA+N++E
Sbjct: 61  EEISNCVEHCSVPVVKSQQYFENEMAQFQERLNRSLVVCQDKFEASKLQKIRPEAINEME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCV++SI++N+ TLP +V+R+K  F+I +
Sbjct: 121 SCVHKSIEENLNTLPHIVQRMKQAFNITN 149

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297843360|ref|XP_002889561.1| hypothetical protein ARALYDRAFT_470580 [Arabidopsis lyrata subsp. lyrata] gi|297335403|gb|EFH65820.1| hypothetical protein ARALYDRAFT_470580 [Arabidopsis lyrata subsp. lyrata]

 Score =  238 bits (608), Expect = 4e-61,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 132/149 (88%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+A  EEQI++ER+RRKLEEVNA+AQ+ L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAAEEQIITERIRRKLEEVNASAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEI+NCVEHCSVPVV AQQHFE EMA+FQER+NRSLMVCQDK+E++KL K  ++A   +E
Sbjct: 61  EEIANCVEHCSVPVVNAQQHFEGEMAQFQERMNRSLMVCQDKFEASKLHKNRVDAAKAME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCVN SI+D++ TLP +V+R+KT FSI D
Sbjct: 121 SCVNTSIEDSLDTLPHIVQRMKTSFSIAD 149

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431749|ref|XP_002269805.1| PREDICTED: protein FAM136A [Vitis vinifera] gi|147838243|emb|CAN73933.1| hypothetical protein VITISV_042801 [Vitis vinifera] gi|296083351|emb|CBI22987.3| unnamed protein product [Vitis vinifera]

 Score =  238 bits (606), Expect = 7e-61,   Method: Compositional matrix adjust.
 Identities = 114/149 (76%), Positives = 129/149 (86%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           MNH+A  EEQ+VSER+RRKL E+N AAQA L+ VQDHVNFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MNHIAAAEEQLVSERLRRKLNEINLAAQAQLSGVQDHVNFTLQQAYFKCAYECFDRKRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEISNCVEHCSVPVV AQ   ENEMAKFQERLNRSLMVCQDK+ESAKLQ+I  +A+ D+E
Sbjct: 61  EEISNCVEHCSVPVVNAQALVENEMAKFQERLNRSLMVCQDKFESAKLQQIRTDAMKDME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCV+QSI ++IKTLP +V RLKT  SI +
Sbjct: 121 SCVDQSIQESIKTLPHVVARLKTSLSINE 149

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|42561726|ref|NP_172064.2| uncharacterized protein [Arabidopsis thaliana] gi|60547533|gb|AAX23730.1| hypothetical protein At1g05730 [Arabidopsis thaliana] gi|91805747|gb|ABE65602.1| unknown [Arabidopsis thaliana] gi|332189764|gb|AEE27885.1| uncharacterized protein [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/149 (72%), Positives = 130/149 (87%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+A  EEQIV+ER+RRKLEEVNA AQ+ L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAAEEQIVTERIRRKLEEVNATAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEI+NCVEHCSVPVV AQQHFE EM++FQER+NRSLMVCQDK+E+AKL K   +A   +E
Sbjct: 61  EEIANCVEHCSVPVVNAQQHFEGEMSQFQERMNRSLMVCQDKFEAAKLHKNRGDAAKAME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCVN SI+D++ TLP +V+R+KT FSI D
Sbjct: 121 SCVNTSIEDSLDTLPHIVQRMKTSFSIAD 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830859|gb|ABK28386.1| unknown [Arabidopsis thaliana]

 Score =  236 bits (602), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 108/149 (72%), Positives = 130/149 (87%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+A  EEQIV+ER+RRKLEEVNA AQ+ L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAAEEQIVTERIRRKLEEVNATAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEI+NCVEHCSVPVV AQQHFE EM++FQER+NRSLMVCQDK+E+AKL K   +A   +E
Sbjct: 61  EEIANCVEHCSVPVVNAQQHFEGEMSQFQERMNRSLMVCQDKFEAAKLHKNRGDAAKAME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCVN SI+D++ TLP +V+R+KT FSI D
Sbjct: 121 SCVNTSIEDSLDTLPHIVQRMKTSFSIAD 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|55978679|gb|AAV68801.1| hypothetical protein AT1G05730 [Arabidopsis thaliana]

 Score =  234 bits (597), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 107/149 (71%), Positives = 129/149 (86%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           M+H+A  EEQIV+ER+RRKLEEVNA AQ+ L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct: 1   MDHIAAAEEQIVTERIRRKLEEVNATAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
           EEI+NCVEHCSVPVV AQQHFE EM++FQER+NRSLMVCQDK+E+ KL K   +A   +E
Sbjct: 61  EEIANCVEHCSVPVVNAQQHFEGEMSQFQERMNRSLMVCQDKFEAXKLHKNRGDAAKAME 120

Query: 121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           SCVN SI+D++ TLP +V+R+KT FSI D
Sbjct: 121 SCVNTSIEDSLDTLPHIVQRMKTSFSIAD 149

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449435097|ref|XP_004135332.1| PREDICTED: uncharacterized protein ZK637.2-like [Cucumis sativus] gi|449521848|ref|XP_004167941.1| PREDICTED: uncharacterized protein ZK637.2-like [Cucumis sativus]

 Score =  229 bits (585), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 110/150 (73%), Positives = 130/150 (86%), Gaps = 3/150 (2%)

Query: 1   MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
           MNH+A MEEQ+VSERMR+KL EVN AAQ+HL P+QDHVNF+LQQAYFKCAYECFDR R+Q
Sbjct: 1   MNHIAAMEEQVVSERMRQKLNEVNMAAQSHLGPIQDHVNFSLQQAYFKCAYECFDRRRRQ 60

Query: 61  EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKL-QKIGIEAVNDL 119
           EEISNCVE+CSVPVV+AQQH ENEMAKFQERLNRSLMVCQDK+E+A+L QK G  +V DL
Sbjct: 61  EEISNCVENCSVPVVKAQQHVENEMAKFQERLNRSLMVCQDKFEAARLQQKTG--SVYDL 118

Query: 120 ESCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
           ESCV+ SI +++ TLP L  +LK  F+I +
Sbjct: 119 ESCVDASIQESMNTLPHLANKLKASFNITN 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	149
TAIR|locus:2828428	149	AT2G31725 "AT2G31725" [Arabido	0.986	0.986	0.755	8.1e-60
TAIR|locus:2031943	149	AT1G05730 "AT1G05730" [Arabido	1.0	1.0	0.724	1.7e-57
TAIR|locus:2044019	147	AT2G43720 "AT2G43720" [Arabido	0.953	0.965	0.654	3.7e-48
TAIR|locus:2031958	145	AT1G05740 "AT1G05740" [Arabido	0.845	0.868	0.543	4.4e-36
MGI|MGI:1913738	138	Fam136a "family with sequence	0.832	0.898	0.277	9.1e-13
UNIPROTKB|Q2HJI3	138	FAM136A "Protein FAM136A" [Bos	0.704	0.760	0.289	1.2e-12
UNIPROTKB|Q96C01	138	FAM136A "Protein FAM136A" [Hom	0.677	0.731	0.310	1.2e-12
RGD|1304825	138	Fam136a "family with sequence	0.832	0.898	0.277	1.9e-12
UNIPROTKB|F1SLD2	138	FAM136A "Uncharacterized prote	0.704	0.760	0.289	5e-12
ZFIN|ZDB-GENE-040426-2729	138	fam136a "family with sequence	0.718	0.775	0.3	8.2e-12

TAIR|locus:2828428 AT2G31725 "AT2G31725" [Arabidopsis thaliana (taxid:3702)]

 Score = 613 (220.8 bits), Expect = 8.1e-60, P = 8.1e-60
 Identities = 111/147 (75%), Positives = 136/147 (92%)

Query:     1 MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
             M+H+A  EEQIVSER+RRKLEEVN AAQ  L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct:     1 MDHIAAAEEQIVSERLRRKLEEVNVAAQTQLSPIQDHINFTLQQAYFKCAYECFDRRRKQ 60

Query:    61 EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
             EEISNCVEHCSVPVV++QQ+FENEMA+FQERLNRSL+VCQDK+E++KLQKI  EAVN++E
Sbjct:    61 EEISNCVEHCSVPVVKSQQYFENEMAQFQERLNRSLVVCQDKFEASKLQKIRPEAVNEME 120

Query:   121 SCVNQSIDDNIKTLPPLVERLKTQFSI 147
             SCV++SI++N+ TLP +V+R+KT F+I
Sbjct:   121 SCVHKSIEENLNTLPHIVQRMKTAFNI 147

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2031943 AT1G05730 "AT1G05730" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 108/149 (72%), Positives = 130/149 (87%)

Query:     1 MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQ 60
             M+H+A  EEQIV+ER+RRKLEEVNA AQ+ L+P+QDH+NFTLQQAYFKCAYECFDR RKQ
Sbjct:     1 MDHIAAAEEQIVTERIRRKLEEVNATAQSQLSPIQDHINFTLQQAYFKCAYECFDRNRKQ 60

Query:    61 EEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLE 120
             EEI+NCVEHCSVPVV AQQHFE EM++FQER+NRSLMVCQDK+E+AKL K   +A   +E
Sbjct:    61 EEIANCVEHCSVPVVNAQQHFEGEMSQFQERMNRSLMVCQDKFEAAKLHKNRGDAAKAME 120

Query:   121 SCVNQSIDDNIKTLPPLVERLKTQFSIKD 149
             SCVN SI+D++ TLP +V+R+KT FSI D
Sbjct:   121 SCVNTSIEDSLDTLPHIVQRMKTSFSIAD 149

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2044019 AT2G43720 "AT2G43720" [Arabidopsis thaliana (taxid:3702)]

 Score = 503 (182.1 bits), Expect = 3.7e-48, P = 3.7e-48
 Identities = 93/142 (65%), Positives = 116/142 (81%)

Query:     8 EEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTRKQEEISNCV 67
             EE++V ER+R+K+ EV++A+Q+ L+PVQDH+NFTLQ+AYFKCAYECFDRTR   EIS C 
Sbjct:     6 EEKMVRERIRKKVNEVSSASQSLLSPVQDHINFTLQKAYFKCAYECFDRTRTHAEISRCA 65

Query:    68 EHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSI 127
             E CSVP+  AQ +F+NEM+ FQERLNRSL+VCQDK+E AK QK   EAVNDLE CVNQ++
Sbjct:    66 ESCSVPITNAQNYFDNEMSVFQERLNRSLVVCQDKFEVAKQQKTRSEAVNDLEHCVNQTV 125

Query:   128 DDNIKTLPPLVERLKTQFSIKD 149
             D+ +KTLP LV R+K   SI D
Sbjct:   126 DEAVKTLPNLVSRMKKALSITD 147

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2031958 AT1G05740 "AT1G05740" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 75/138 (54%), Positives = 104/138 (75%)

Query:     1 MNHVAGMEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTL-----------QQAYFKC 49
             M+ +A  EEQI+ ER+RRK+EEVNA+ Q+ L+P+Q+H++FTL           QQAYFKC
Sbjct:     1 MDRMAVAEEQILLERVRRKIEEVNASGQSQLSPIQEHISFTLLIYAPLIDDELQQAYFKC 60

Query:    50 AYECFDRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQ 109
             + ECF++ RK E  +NCVE C VPV ++QQ F+++MAKFQ+R+NRSLMVCQDK+E+AKL 
Sbjct:    61 SNECFEKRRKPEVTTNCVELCRVPVAKSQQQFDSDMAKFQDRMNRSLMVCQDKFEAAKLL 120

Query:   110 KIG-IEAVNDLESCVNQS 126
              +  I+A  D+E CVN +
Sbjct:   121 NMNRIDAAKDMEGCVNDA 138

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

MGI|MGI:1913738 Fam136a "family with sequence similarity 136, member A" [Mus musculus (taxid:10090)]

 Score = 169 (64.5 bits), Expect = 9.1e-13, P = 9.1e-13
 Identities = 35/126 (27%), Positives = 65/126 (51%)

Query:    23 VNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRTR-KQEEISNCVEHCSVPVVRAQQHF 81
             V  A  A +  V+      +Q   F+C+  C + T+   +++  C+E C  P+ +AQ   
Sbjct:     9 VQEAVDAMVKSVERENIRKMQGLMFRCSANCCEDTQASMQQVHQCIERCHAPLAQAQALV 68

Query:    82 ENEMAKFQERLNRSLMVCQDKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVER 140
              +E+ +FQ+RL R  M C DK  +S       ++    L+SCV + +DD++  +P + ++
Sbjct:    69 TSELERFQDRLARCTMHCNDKAKDSMDAGTKELQVKRQLDSCVTKCVDDHMHLIPTMTKK 128

Query:   141 LKTQFS 146
             +K   S
Sbjct:   129 MKESLS 134

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IDA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q2HJI3 FAM136A "Protein FAM136A" [Bos taurus (taxid:9913)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 31/107 (28%), Positives = 57/107 (53%)

Query:    42 LQQAYFKCAYECFDRTR-KQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
             +Q   F+C+  C + ++   +++  C+E C  P+ +AQ    +E+ KFQ+RL R  M C 
Sbjct:    28 MQGLMFRCSAACCEESQASMQQVHQCIERCHAPLAQAQALVTSELEKFQDRLARCTMYCN 87

Query:   101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS 146
             DK  +S       +     LE+CV + +DD++  +P +  ++K   S
Sbjct:    88 DKAKDSIDAGSKELHVKRQLETCVTKCVDDHMNLIPTMTRKMKESLS 134

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|Q96C01 FAM136A "Protein FAM136A" [Homo sapiens (taxid:9606)]

 Score = 168 (64.2 bits), Expect = 1.2e-12, P = 1.2e-12
 Identities = 32/103 (31%), Positives = 57/103 (55%)

Query:    42 LQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
             +Q   F+C+  C  D     +++  C+E C VP+ +AQ    +E+ KFQ+RL R  M C 
Sbjct:    28 MQGLMFRCSASCCEDSQASMKQVHQCIERCHVPLAQAQALVTSELEKFQDRLARCTMHCN 87

Query:   101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLK 142
             DK  +S       ++    L+SCV + +DD++  +P + +++K
Sbjct:    88 DKAKDSIDAGSKELQVKQQLDSCVTKCVDDHMHLIPTMTKKMK 130

GO:0005739 "mitochondrion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IDA

RGD|1304825 Fam136a "family with sequence similarity 136, member A" [Rattus norvegicus (taxid:10116)]

 Score = 166 (63.5 bits), Expect = 1.9e-12, P = 1.9e-12
 Identities = 35/126 (27%), Positives = 63/126 (50%)

Query:    23 VNAAAQAHLAPVQDHVNFTLQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHF 81
             V  A  A +  V+      +Q   F+C+  C  D     +++  C+E C  P+ +AQ   
Sbjct:     9 VQEAVDAMVKSVERENIRKMQGLMFRCSANCCEDNQASMQQVHQCIERCHAPLAQAQALV 68

Query:    82 ENEMAKFQERLNRSLMVCQDKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVER 140
              +E+ +FQ+RL R  M C DK  +S       ++    L+SCV + +DD++  +P + ++
Sbjct:    69 TSELERFQDRLARCTMHCNDKAKDSMDAGSKELQVKRQLDSCVAKCVDDHMHLIPTMTKK 128

Query:   141 LKTQFS 146
             +K   S
Sbjct:   129 IKESLS 134

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

UNIPROTKB|F1SLD2 FAM136A "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 31/107 (28%), Positives = 56/107 (52%)

Query:    42 LQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRSLMVCQ 100
             +Q   F+C+  C  D     +++  C+E C  P+ +AQ    +E+ KFQ+RL R  + C 
Sbjct:    28 MQGLMFRCSAGCCEDSQASMQQVHQCIERCHAPLAQAQALVTSELEKFQDRLARCTLHCN 87

Query:   101 DKY-ESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS 146
             DK  +S       ++    LE CV + +DD++  +P + +++K   S
Sbjct:    88 DKAKDSIDAGSKELQVKRQLECCVTKCVDDHMNLIPTMTKKMKESLS 134

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040426-2729 fam136a "family with sequence similarity 136, member A" [Danio rerio (taxid:7955)]

 Score = 160 (61.4 bits), Expect = 8.2e-12, P = 8.2e-12
 Identities = 33/110 (30%), Positives = 57/110 (51%)

Query:    35 QDHVNFTLQQAYFKCAYECFDRT-RKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLN 93
             ++H+   +Q   F+C+ EC +       ++  C+E C  P+ +AQ    +E+ +FQ+RL+
Sbjct:    22 KEHIR-KMQGRMFRCSAECCEHPGNSMNQVHQCIERCHTPLAKAQGLVTSELEQFQDRLS 80

Query:    94 RSLMVCQDKYESAKLQKIGIEAVNDL-ESCVNQSIDDNIKTLPPLVERLK 142
             R  M C DK +          AV  L + CV   +D+++  LP +  RLK
Sbjct:    81 RCTMHCSDKAKDLFDSGAKEPAVRALMDGCVGSCVDEHLNLLPSMTRRLK 130

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	149
pfam05811	131	pfam05811, DUF842, Eukaryotic protein of unknown f	2e-51

>gnl|CDD|218759 pfam05811, DUF842, Eukaryotic protein of unknown function (DUF842)

 Score =  159 bits (405), Expect = 2e-51
 Identities = 52/131 (39%), Positives = 80/131 (61%), Gaps = 2/131 (1%)

Query: 17  RRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECF-DRTRKQEEISNCVEHCSVPVV 75
            RK E V +A  + L  +   +   +Q+  F+CA EC  D     EE+ NCVE CSVP+ 
Sbjct: 1   ERKQERVQSAVDSMLDDLDRTILRKMQKKMFRCAAECCDDSRASMEEVQNCVERCSVPLA 60

Query: 76  RAQQHFENEMAKFQERLNRSLMVCQDKYESAKLQKI-GIEAVNDLESCVNQSIDDNIKTL 134
           +AQQ+ ++E+++FQ RL R LMVCQDK++ AK       +A  ++E CVN+ +D ++  L
Sbjct: 61  KAQQYVQSELSQFQNRLQRCLMVCQDKFKDAKGPNPNESDAAKEMERCVNKCVDKHVNLL 120

Query: 135 PPLVERLKTQF 145
           P +V+R+K   
Sbjct: 121 PEIVKRMKKTL 131

This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation. Length = 131

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	149
PF05811	131	DUF842: Eukaryotic protein of unknown function (DU	100.0
KOG3377	143	consensus Uncharacterized conserved protein [Funct	100.0
PF02953	66	zf-Tim10_DDP: Tim10/DDP family zinc finger; InterP	94.46
KOG3479	83	consensus Mitochondrial import inner membrane tran	82.38

>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function

Probab=100.00  E-value=2.4e-53  Score=321.99  Aligned_cols=129  Identities=35%  Similarity=0.626  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHHHHhhchhhhhhhHHhHHHhhhhhhhhhccc-cCHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHH
Q 031998           17 RRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRT-RKQEEISNCVEHCSVPVVRAQQHFENEMAKFQERLNRS   95 (149)
Q Consensus        17 e~~~~rvq~av~~mv~~ld~~~lR~mQk~~f~Caa~Ccd~~-~s~e~V~~CVe~C~~pl~~aq~~vq~El~~FQ~RLqRC   95 (149)
                      |++++||+.||++||++||++||||||++||+|+|+||||+ +|+++|++||++|+.||.+||++|++||++||+||+||
T Consensus         1 ~~~~~rvq~av~~mv~~ld~~~lr~mQ~~~f~C~a~Ccdd~~~s~e~V~~Cve~C~~pl~~aq~~vq~El~~FQ~rlqrC   80 (131)
T PF05811_consen    1 EQQQQRVQKAVEKMVDDLDRKYLRKMQKKMFKCAAKCCDDSSASMEQVQRCVERCQQPLQQAQNYVQNELEQFQNRLQRC   80 (131)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999888 99999999999999999999999999999999999999


Q ss_pred             HHHHHHhhHhhhhhhhh-HHHHHHHHhHHHHHHHhHhhCChHHHHHHHhhh
Q 031998           96 LMVCQDKYESAKLQKIG-IEAVNDLESCVNQSIDDNIKTLPPLVERLKTQF  145 (149)
Q Consensus        96 ~~~CqDk~kd~~~~~~~-~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~l  145 (149)
                      +|+|+|+++|++++++. .++.++||+||++|||+||++||+|++|||++|
T Consensus        81 ~~~C~dk~~d~~~~~~~~~~~~~~~e~C~~~Cvd~hi~llP~l~~r~k~~L  131 (131)
T PF05811_consen   81 VMHCQDKAKDKMDPNPNESDAEKQLESCVNKCVDDHIKLLPSLTKRMKKSL  131 (131)
T ss_pred             HHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhC
Confidence            99999999999988875 688899999999999999999999999999987

The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.

>KOG3377 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.6e-52  Score=319.27  Aligned_cols=140  Identities=41%  Similarity=0.730  Sum_probs=133.0

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhchhhhhhhHHhHHHhhhhhhhhhccc-cCHHHHHHHHHhcCHHHHHHHHHHHHHH
Q 031998            7 MEEQIVSERMRRKLEEVNAAAQAHLAPVQDHVNFTLQQAYFKCAYECFDRT-RKQEEISNCVEHCSVPVVRAQQHFENEM   85 (149)
Q Consensus         7 ~~~~~~~~~~e~~~~rvq~av~~mv~~ld~~~lR~mQk~~f~Caa~Ccd~~-~s~e~V~~CVe~C~~pl~~aq~~vq~El   85 (149)
                      +|++++   +|+++.+|++|+++|+++|++.|||+||+.||+|||+||||+ ++.+.|++||++|+.||++||+||++||
T Consensus         2 ~~~~~m---~E~~r~kveeav~~m~~~L~r~hir~mQ~~mfrCaa~Ccdd~r~~~e~v~~ci~~c~~pl~~aQ~~~~~El   78 (143)
T KOG3377|consen    2 AEEQIM---LERQRRKVEEAVDEMQSDLDRDHIRKMQQAMFRCAAECCDDSRASEEAVNCCIECCVPPLTKAQQYVQSEL   78 (143)
T ss_pred             cHHHHH---HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            577774   566777899999999999999999999999999999999999 9999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhh-HHHHHHHHhHHHHHHHhHhhCChHHHHHHHhhhccCC
Q 031998           86 AKFQERLNRSLMVCQDKYESAKLQKIG-IEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFSIKD  149 (149)
Q Consensus        86 ~~FQ~RLqRC~~~CqDk~kd~~~~~~~-~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~l~~~~  149 (149)
                      ++||+||+||+|+||||+++++.++++ .++..+||+||++|||+|++|||+|++|||++|+|.+
T Consensus        79 ~~FQ~RL~Rc~m~C~Dk~~~~~~~~~~~~~~~~~~e~Cvn~cvd~~v~liP~m~k~MK~al~~~~  143 (143)
T KOG3377|consen   79 GKFQDRLNRCLMVCNDKFEASKLQGSKRLKAVQQFESCVNKCVDDHVGLIPTMVKRMKEALSIGG  143 (143)
T ss_pred             HHHHHHHHHHHHHHhHHHHHhcccCCchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcCC
Confidence            999999999999999999999999984 7899999999999999999999999999999999864

>PF02953 zf-Tim10_DDP: Tim10/DDP family zinc finger; InterPro: IPR004217 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.46  E-value=0.14  Score=33.82  Aligned_cols=59  Identities=27%  Similarity=0.396  Sum_probs=39.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHh
Q 031998           82 ENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKT  143 (149)
Q Consensus        82 q~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~  143 (149)
                      +.++..|++-+++-...|.||=-+.+..+   .+...=++|+..|+++|+...-.+.+++.+
T Consensus         7 ~~q~~~~~~~~~~~t~~Cf~kCv~~~~~~---~L~~~E~~Ci~~C~~ky~~~~~~v~~~~~~   65 (66)
T PF02953_consen    7 EQQMKDFQELFNKLTERCFDKCVTKFPSS---SLSSKEESCIDNCVDKYIDTNQFVSKRFQQ   65 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHS-TTSSS---S--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcCCCCCC---CCchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34667788888777777777655442211   222344889999999999988777777653

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a putative zinc binding domain with four conserved cysteine residues. Members of this family include subunits 8, 9, 10 and 13 of the mitochondrial inner membrane translocase complex, which are involved in mitochondrial protein import [, ]. Defects in TIM8 are the cause of 2 human syndromes: Mohr-Tranebjaerg syndrome (MTS) [MIM:304700]; also known as dystonia-deafness syndrome (DDS) or X-linked progressive deafness type 1 (DFN-1). It is a recessive neurodegenerative syndrome characterised by postlingual progressive sensorineural deafness as the first presenting symptom in early childhood, followed by progressive dystonia, spasticity, dysphagia, mental deterioration, paranoia and cortical blindness. Jensen syndrome [MIM:311150]; also known as opticoacoustic nerve atrophy with dementia. This X-linked disease is characterised by deafness, blindness and muscle weakness. The small alpha helical proteins Tim8 and Tim13 assemble into a hexameric complex which can bind Tim23 as its substrate and chaperone the hydrophobic Tim23 across the aqueous membrane space []. More information on zinc fingers can be found at Protein of the Month: Zinc Fingers [].; GO: 0006626 protein targeting to mitochondrion, 0045039 protein import into mitochondrial inner membrane, 0042719 mitochondrial intermembrane space protein transporter complex; PDB: 2BSK_B 3CJH_A 3DXR_A.

>KOG3479 consensus Mitochondrial import inner membrane translocase, subunit TIM9 [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.38  E-value=6.1  Score=28.19  Aligned_cols=44  Identities=18%  Similarity=0.388  Sum_probs=30.8

Q ss_pred             HHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHh
Q 031998           93 NRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKT  143 (149)
Q Consensus        93 qRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~  143 (149)
                      .+|-.+|-|.+-..-..       .+=+.|+.+|++++++.=--+.+|..+
T Consensus        20 E~CF~dCV~dft~r~l~-------~~Ee~C~~~C~~Kflk~nqRv~qrf~e   63 (83)
T KOG3479|consen   20 ELCFSDCVDDFTTRDLS-------GKEETCVMRCAEKFLKMNQRVSQRFQE   63 (83)
T ss_pred             HHHHHHHHhHhhccccc-------chHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888887765443322       344889999999999876666666544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	149
3dxr_B	95	Mitochondrial import inner membrane translocase su	89.09
3cjh_B	64	Mitochondrial import inner membrane translocase S	84.56
3cjh_A	64	Mitochondrial import inner membrane translocase S	82.91
3dxr_A	89	Mitochondrial import inner membrane translocase su	81.39
2bsk_A	89	Mitochondrial import inner membrane translocase su	80.57

>3dxr_B Mitochondrial import inner membrane translocase subunit TIM10; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=89.09  E-value=0.74  Score=32.28  Aligned_cols=63  Identities=16%  Similarity=0.241  Sum_probs=43.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhh
Q 031998           80 HFENEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQ  144 (149)
Q Consensus        80 ~vq~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~  144 (149)
                      ..+.|+..|++-+++=+-.|-+|=-++.-++  .++...=+.|+..||++|+..--.|.+|+.+.
T Consensus        23 ~aE~q~~~~~~l~nklte~Cf~KCV~~~~~~--~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~q~~   85 (95)
T 3dxr_B           23 AAEAELDLVTDMFNKLVNNCYKKCINTSYSE--GELNKNESSCLDRCVAKYFETNVQVGENMQKM   85 (95)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHCCCTTCC--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhCCCCCCC--CCCCchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4577889999998888888887654421011  11112236899999999998877788887653

>3cjh_B Mitochondrial import inner membrane translocase S TIM8; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=84.56  E-value=1.1  Score=28.70  Aligned_cols=58  Identities=17%  Similarity=0.256  Sum_probs=35.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHh
Q 031998           83 NEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKT  143 (149)
Q Consensus        83 ~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~  143 (149)
                      .++..||+-+++=+-.|.+|=-+.+..   .++...=++|+..||++|+..--.+.+++.+
T Consensus         5 ~~~~~~~~~~~~lt~~Cf~kCv~~~~~---~~L~~~E~~Ci~~Cv~ky~~~~~~v~~~~~~   62 (64)
T 3cjh_B            5 NSKQKVQMSIHQFTNICFKKCVESVND---SNLSSQEEQCLSNCVNRFLDTNIRIVNGLQN   62 (64)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHCCCCSS---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccCCC---CcCChhHhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667777666666666554333111   1111223689999999999877777777654

>3cjh_A Mitochondrial import inner membrane translocase S TIM13; cyclic heterohexamer, chaperone, M binding, mitochondrion, protein transport; 2.60A {Saccharomyces cerevisiae}

Probab=82.91  E-value=1.2  Score=28.80  Aligned_cols=27  Identities=7%  Similarity=0.406  Sum_probs=22.2

Q ss_pred             HhHHHHHHHhHhhCChHHHHHHHhhhc
Q 031998          120 ESCVNQSIDDNIKTLPPLVERLKTQFS  146 (149)
Q Consensus       120 e~Cv~~Cvd~hi~lLP~l~krmk~~l~  146 (149)
                      ++|+..||++|+..--.+.+++-+.+.
T Consensus        30 ~~Ci~~Cv~Ky~~~~~~v~~~~~~~~~   56 (64)
T 3cjh_A           30 DACIDQCLAKYMRSWNVISKAYISRIQ   56 (64)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            689999999999888888888766543

>3dxr_A Mitochondrial import inner membrane translocase subunit TIM9; alpha-propeller, helix-turn-helix, intramolecular disulfides., chaperone; 2.50A {Saccharomyces cerevisiae}

Probab=81.39  E-value=4  Score=27.91  Aligned_cols=58  Identities=12%  Similarity=0.224  Sum_probs=36.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHh
Q 031998           83 NEMAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKT  143 (149)
Q Consensus        83 ~El~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~  143 (149)
                      ..+..|++-+++=+-.|.+|=-+.+..+   .+...=++|+..||++|+..--.|.+|+.+
T Consensus        21 ~q~k~~~~l~~~lte~Cf~kCv~~~~~~---~L~~~E~~Ci~~Cv~Ky~~~~~~v~~~~~~   78 (89)
T 3dxr_A           21 KQMKDFMRLYSNLVERCFTDCVNDFTTS---KLTNKEQTCIMKCSEKFLKHSERVGQRFQE   78 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCCSSS---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCC---CCCchHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677666666666665543321111   111222689999999999887777777765

>2bsk_A Mitochondrial import inner membrane translocase subunit TIM9 A; protein transport, mitochondrial protein import, TIM complex; 3.3A {Homo sapiens} SCOP: g.83.1.1

Probab=80.57  E-value=1.4  Score=30.21  Aligned_cols=55  Identities=13%  Similarity=0.181  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhh
Q 031998           87 KFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQ  144 (149)
Q Consensus        87 ~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~  144 (149)
                      +|++-+++=+-.|.+|=-+.+..   ..+...=++|+..||++|+..--.|.+|+.+.
T Consensus        16 ~~~~l~n~lte~Cf~KCv~~~~~---~~L~~~E~~Ci~~Cv~Ky~d~~~~V~~~~~~~   70 (89)
T 2bsk_A           16 EFLGTYNKLTETCFLDCVKDFTT---REVKPEETTCSEHCLQKYLKMTQRISMRFQEY   70 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSS---SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHcccCCC---CcCCchHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35655555555555543322111   11112236899999999998877788887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	149
d2bska1	73	Mitochondrial import inner membrane translocase su	85.4
d2bskb1	65	Mitochondrial import inner membrane translocase su	83.57

>d2bska1 g.83.1.1 (A:13-85) Mitochondrial import inner membrane translocase subunit Tim9 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim9
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.40  E-value=0.35  Score=30.76  Aligned_cols=56  Identities=13%  Similarity=0.206  Sum_probs=31.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhh
Q 031998           86 AKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQ  144 (149)
Q Consensus        86 ~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~  144 (149)
                      ..|..-.++-+-.|.+|=-.....+   ++...=++|+..||++|+..=-.+.+|+.+.
T Consensus         3 kdfl~~yn~lte~Cf~kCv~~~~~~---~L~~~E~~Ci~~Cv~Kf~~~~~~v~~rfqe~   58 (73)
T d2bska1           3 KEFLGTYNKLTETCFLDCVKDFTTR---EVKPEETTCSEHCLQKYLKMTQRISMRFQEY   58 (73)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCCSSS---SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCCCC---CCCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555554432221111   1122337899999999998766677776543

>d2bskb1 g.83.1.1 (B:13-77) Mitochondrial import inner membrane translocase subunit Tim10 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: Tim10-like
superfamily: Tim10-like
family: Tim10/DDP
domain: Mitochondrial import inner membrane translocase subunit Tim10
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.57  E-value=0.28  Score=30.49  Aligned_cols=60  Identities=12%  Similarity=0.241  Sum_probs=35.6

Q ss_pred             HHHHHHHHHHHHHHHHHhhHhhhhhhhhHHHHHHHHhHHHHHHHhHhhCChHHHHHHHhhhc
Q 031998           85 MAKFQERLNRSLMVCQDKYESAKLQKIGIEAVNDLESCVNQSIDDNIKTLPPLVERLKTQFS  146 (149)
Q Consensus        85 l~~FQ~RLqRC~~~CqDk~kd~~~~~~~~~~~~~le~Cv~~Cvd~hi~lLP~l~krmk~~l~  146 (149)
                      |+..++=+++=+-.|.+|=-+++..+  .++...=++|+..|+++|+..---+.+|+.+...
T Consensus         3 ~~~~~~m~nklt~~Cf~kCV~~~~~~--~~L~~~E~~Ci~~C~~ky~d~~~~v~~r~q~~~~   62 (65)
T d2bskb1           3 VEMMADMYNRMTSACHRKCVPPHYKE--AELSKGESVCLDRCVSKYLDIHERMGKKLTELSM   62 (65)
T ss_dssp             TTTTHHHHHHHHHHHHHHHCCTTCCS--SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHCCCCCCC--CcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33445555555555555543222111  1112233679999999999988888888876543