Citrus Sinensis ID: 032018

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------15
Protein Sequence
MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDGNRKEGSAQGVLVGPAGSSE
Secondary Structure (PSIPRED)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEccEEEEccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccccccccccEEEEccccccc
Coil and Loop (DISEMBL)
magraeterrepvNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVInaikpldpsrkcyrMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIrirkpeseskddgnrkegsaqgvlvgpagsse
Flexible Loop (DISEMBL)
magraeterrepvneqIVANMYTSMRSELNQIYSKITELEMEASEHSLVInaikpldpsrKCYRMIGGVLVERtisevlpavqrnkeGIEEVIARLNEALAAkkkeisdfeakykirirkpeseskddgnrkegsaqgvlvgpagsse
Low Complexity Region (SEG)
MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDGNRKEGSAQGVLVGPAGSSE
Disordered region (IsUnstruct)
******************ANMYT****ELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAK******F***Y**********************************
Disordered Region (DISOPRED)
**********************TSMRS*************MEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE*************KEISDFEAKY***************************GP*****
Disordered Region (DISEMBL)
***********PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKP***************************
Disordered Region (DISPRO)
************VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKP***************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNxxxxxxxxxxxxxxxxxxxxxxxxxxxxYKIRIRKPESESKDDGNRKEGSAQGVLVGPAGSSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	148	2.2.26 [Sep-21-2011]
Q9LJ98	148	Probable prefoldin subuni	yes	no	0.932	0.932	0.712	3e-51
A1A4P5	154	Prefoldin subunit 2 OS=Bo	yes	no	0.851	0.818	0.473	1e-27
Q9UHV9	154	Prefoldin subunit 2 OS=Ho	yes	no	0.851	0.818	0.473	1e-27
O70591	154	Prefoldin subunit 2 OS=Mu	yes	no	0.851	0.818	0.473	3e-27
B0BN18	154	Prefoldin subunit 2 OS=Ra	yes	no	0.851	0.818	0.473	3e-27
Q55GN3	116	Probable prefoldin subuni	yes	no	0.756	0.965	0.464	8e-27
Q9UTC9	114	Probable prefoldin subuni	yes	no	0.729	0.947	0.379	8e-18
Q9VTE5	143	Probable prefoldin subuni	yes	no	0.702	0.727	0.4	2e-16
P40005	111	Prefoldin subunit 2 OS=Sa	yes	no	0.668	0.891	0.383	2e-14
Q9N5M2	141	Prefoldin subunit 2 OS=Ca	yes	no	0.682	0.716	0.326	2e-11

>sp|Q9LJ98|PFD2_ARATH Probable prefoldin subunit 2 OS=Arabidopsis thaliana GN=At3g22480 PE=2 SV=1

 Score =  200 bits (508), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 118/139 (84%), Gaps = 1/139 (0%)

Query: 10  REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
           REP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGV
Sbjct: 11  REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGV 70

Query: 70  LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
           LVERTI EVLPAVQRNK+G+EEV+ +L E L  KKK++++FEAKYKIRI K E ++K+ G
Sbjct: 71  LVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQE-DNKEGG 129

Query: 130 NRKEGSAQGVLVGPAGSSE 148
           N+KEG+AQGVLVG A SS+
Sbjct: 130 NKKEGNAQGVLVGAASSSQ 148

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|A1A4P5|PFD2_BOVIN Prefoldin subunit 2 OS=Bos taurus GN=PFDN2 PE=2 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 5/131 (3%)

Query: 15  EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
           EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24  EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query: 75  ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
           + EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct: 83  VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query: 131 RKEGSAQGVLV 141
             + S+ GVLV
Sbjct: 143 GAKASSAGVLV 153

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Bos taurus (taxid: 9913)

>sp|Q9UHV9|PFD2_HUMAN Prefoldin subunit 2 OS=Homo sapiens GN=PFDN2 PE=1 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 90/131 (68%), Gaps = 5/131 (3%)

Query: 15  EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
           EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24  EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query: 75  ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
           + EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct: 83  VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query: 131 RKEGSAQGVLV 141
             + S+ GVLV
Sbjct: 143 GAKASSAGVLV 153

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|O70591|PFD2_MOUSE Prefoldin subunit 2 OS=Mus musculus GN=Pfdn2 PE=2 SV=2

 Score =  120 bits (301), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 91/131 (69%), Gaps = 5/131 (3%)

Query: 15  EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
           EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24  EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query: 75  ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
           + EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct: 83  VKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query: 131 RKEGSAQGVLV 141
             + S+ GVLV
Sbjct: 143 GAKASSAGVLV 153

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Mus musculus (taxid: 10090)

>sp|B0BN18|PFD2_RAT Prefoldin subunit 2 OS=Rattus norvegicus GN=Pfdn2 PE=2 SV=1

 Score =  120 bits (300), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 62/131 (47%), Positives = 91/131 (69%), Gaps = 5/131 (3%)

Query: 15  EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
           EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct: 24  EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query: 75  ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
           + EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct: 83  VKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query: 131 RKEGSAQGVLV 141
             + S+ GVLV
Sbjct: 143 GAKSSSAGVLV 153

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q55GN3|PFD2_DICDI Probable prefoldin subunit 2 OS=Dictyostelium discoideum GN=pfdn2 PE=3 SV=1

 Score =  119 bits (297), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 52/112 (46%), Positives = 85/112 (75%)

Query: 7   TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMI 66
           +++++ + E  +   Y  ++S+  QI S+I+E E +  E+ LVINAI+ L+ +RKC+RM+
Sbjct: 2   SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMV 61

Query: 67  GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
           GGVLVERT+ EVLP +++N++GI+EV+ +L+E L+ K KE++DF A YKI+I
Sbjct: 62  GGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q9UTC9|PFD2_SCHPO Probable prefoldin subunit 2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC227.10 PE=3 SV=1

 Score = 89.0 bits (219), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 41/108 (37%), Positives = 66/108 (61%)

Query: 11  EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVL 70
           +P  +QI+   Y S +S L QI  KI +LE +A EH LV++ +  +D +R+C+RMI GVL
Sbjct: 4   QPSRQQILQTQYNSYKSRLQQIAQKIVDLETDADEHKLVMDTLNSMDNNRRCFRMIHGVL 63

Query: 71  VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
           VERT+  V+P ++  +EGI+  +  L +     + E   F+   KI++
Sbjct: 64  VERTVGTVVPILKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNKIQV 111

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q9VTE5|PFD2_DROME Probable prefoldin subunit 2 OS=Drosophila melanogaster GN=l(3)01239 PE=2 SV=1

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 64/105 (60%), Gaps = 1/105 (0%)

Query: 15  EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
           E IVA  +  +R+E   + + +  LEM+  EH  VI  ++  DP RKC+R IGGVL ERT
Sbjct: 13  EAIVA-QFQQLRNEQRNLVNSLNTLEMDLREHKTVIETLEAADPERKCFRQIGGVLCERT 71

Query: 75  ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119
           + EVLP +  NK+ I + I  +   L+ K  E++ F+ ++ I+IR
Sbjct: 72  VKEVLPQLVENKDFIAKTIQMVTNDLSKKGSELNKFKEEHNIKIR 116

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

>sp|P40005|PFD2_YEAST Prefoldin subunit 2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GIM4 PE=1 SV=2

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 58/99 (58%)

Query: 22  YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPA 81
           Y   +  L ++ +KI EL  +  EH++VI  +K  +P+RKCYRMIGG LVE  +   LP 
Sbjct: 12  YNEYKQILEELQTKIIELGHDKDEHTIVIKTLKDAEPTRKCYRMIGGALVESDVQTSLPI 71

Query: 82  VQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
           ++  KE IE  I+++ E L    KE   ++   KI++ K
Sbjct: 72  LETKKENIEGTISKMKETLIQTAKEFEKWKKDNKIQVVK 110

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9N5M2|PFD2_CAEEL Prefoldin subunit 2 OS=Caenorhabditis elegans GN=pdf-2 PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%)

Query: 18  VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISE 77
           V   + ++R +   I +++T +E E  E   V+  IK L+P +KC+R+I   LVE T+ +
Sbjct: 20  VVEKFKALRDQQQDIAAEVTRIEEERREFGRVLEVIKDLEPDQKCFRLISDTLVEYTVKD 79

Query: 78  VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
           V+P +Q N   +  V  +LN+ L  K KE++  +  + IR+
Sbjct: 80  VIPDLQNNIANLTIVSKQLNDQLVEKGKELNTHKTTHNIRL 120

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Caenorhabditis elegans (taxid: 6239)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
224099815	145	predicted protein [Populus trichocarpa]	0.972	0.993	0.847	3e-65
449447400	148	PREDICTED: probable prefoldin subunit 2-	0.993	0.993	0.817	6e-63
224054724	145	predicted protein [Populus trichocarpa]	0.972	0.993	0.812	1e-61
255552175	147	prefoldin subunit, putative [Ricinus com	0.993	1.0	0.797	5e-61
255647561	146	unknown [Glycine max]	0.939	0.952	0.827	8e-61
356517732	146	PREDICTED: probable prefoldin subunit 2-	0.939	0.952	0.827	2e-60
359806777	146	uncharacterized protein LOC100786369 [Gl	0.939	0.952	0.820	3e-60
225432674	194	PREDICTED: probable prefoldin subunit 2-	1.0	0.762	0.777	4e-60
297737057	295	unnamed protein product [Vitis vinifera]	1.0	0.501	0.777	1e-59
359806404	146	uncharacterized protein LOC100812005 [Gl	0.939	0.952	0.812	1e-59

>gi|224099815|ref|XP_002311631.1| predicted protein [Populus trichocarpa] gi|222851451|gb|EEE88998.1| predicted protein [Populus trichocarpa]

 Score =  252 bits (644), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 122/144 (84%), Positives = 134/144 (93%)

Query: 5   AETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR 64
           AE++R EP+NEQ+VANMYT+MRSELNQIYSKITELEM+ SEHSLVINAI+PLDPSR+CYR
Sbjct: 2   AESDRNEPINEQVVANMYTAMRSELNQIYSKITELEMDVSEHSLVINAIQPLDPSRRCYR 61

Query: 65  MIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESE 124
           MIGGVLVERTI EVLPAVQRNKEGIEEVI RLNEA   KKKEI+DFEAKYKIRIRK +SE
Sbjct: 62  MIGGVLVERTIKEVLPAVQRNKEGIEEVIVRLNEAAERKKKEIADFEAKYKIRIRKSDSE 121

Query: 125 SKDDGNRKEGSAQGVLVGPAGSSE 148
            KDD N+KEGS+QGVLVGPAGSSE
Sbjct: 122 VKDDTNKKEGSSQGVLVGPAGSSE 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447400|ref|XP_004141456.1| PREDICTED: probable prefoldin subunit 2-like [Cucumis sativus] gi|449481365|ref|XP_004156161.1| PREDICTED: probable prefoldin subunit 2-like [Cucumis sativus]

 Score =  244 bits (624), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 121/148 (81%), Positives = 136/148 (91%), Gaps = 1/148 (0%)

Query: 1   MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSR 60
           MA  +E+ER+EPVNEQ+VANMY ++RSELNQIYSKITELEMEASEHSLVI+AI+PLDPSR
Sbjct: 1   MASSSESERKEPVNEQMVANMYGALRSELNQIYSKITELEMEASEHSLVISAIEPLDPSR 60

Query: 61  KCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
           +CYRMIGGVLVERTI EVLPAVQRNKEG+EEVI+RLNEAL  KKKEISD EAKYKIRIRK
Sbjct: 61  RCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEISDLEAKYKIRIRK 120

Query: 121 PESESK-DDGNRKEGSAQGVLVGPAGSS 147
           P+ E+K +D  RKEG+AQGVLVGPAG S
Sbjct: 121 PDGEAKEEDSGRKEGAAQGVLVGPAGES 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054724|ref|XP_002298355.1| predicted protein [Populus trichocarpa] gi|118482282|gb|ABK93068.1| unknown [Populus trichocarpa] gi|222845613|gb|EEE83160.1| predicted protein [Populus trichocarpa]

 Score =  241 bits (614), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 117/144 (81%), Positives = 131/144 (90%)

Query: 5   AETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR 64
           AE++ REP+NEQ V NMY +MR+ELNQIYSKITELEM+ASEHSLVINAI+PLD SR+CYR
Sbjct: 2   AESDPREPINEQAVVNMYNAMRAELNQIYSKITELEMDASEHSLVINAIEPLDQSRRCYR 61

Query: 65  MIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESE 124
           MIGGVLVERT+ EVLPAVQRNKEGIEEVIARLNEA   KKKEI+DFE KYKIRIRK +SE
Sbjct: 62  MIGGVLVERTVKEVLPAVQRNKEGIEEVIARLNEAAVKKKKEIADFEDKYKIRIRKADSE 121

Query: 125 SKDDGNRKEGSAQGVLVGPAGSSE 148
            KDD ++KEGS+QGVLVGPAGSSE
Sbjct: 122 VKDDSSKKEGSSQGVLVGPAGSSE 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552175|ref|XP_002517132.1| prefoldin subunit, putative [Ricinus communis] gi|223543767|gb|EEF45295.1| prefoldin subunit, putative [Ricinus communis]

 Score =  238 bits (607), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 118/148 (79%), Positives = 131/148 (88%), Gaps = 1/148 (0%)

Query: 1   MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSR 60
           MA +AE +  E +NEQ V N Y+ MRSELNQIYSK+TELEME SEHSLVINAI+PLDPSR
Sbjct: 1   MASKAEGDH-ESINEQAVVNAYSGMRSELNQIYSKVTELEMEVSEHSLVINAIQPLDPSR 59

Query: 61  KCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
           +CYRMIGGVLVERTI EVLPAVQRNK+GIEEVIARLNEAL  KKK+I++FEAKYKIRIRK
Sbjct: 60  RCYRMIGGVLVERTIKEVLPAVQRNKDGIEEVIARLNEALEKKKKDIAEFEAKYKIRIRK 119

Query: 121 PESESKDDGNRKEGSAQGVLVGPAGSSE 148
           PESE KDDG +KEGS+QGVLVGPA S E
Sbjct: 120 PESEVKDDGGKKEGSSQGVLVGPASSCE 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255647561|gb|ACU24244.1| unknown [Glycine max]

 Score =  238 bits (606), Expect = 8e-61,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 127/139 (91%)

Query: 10  REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
           +EPVNEQ VANMY +MRSELNQIYSKITELEME SEH+LV NAI+PLD SR+CYRMIGGV
Sbjct: 8   KEPVNEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGV 67

Query: 70  LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
           LVERTI EVLPAVQRNKEG+EEV+ARLNEAL  KKKEIS+FEAKYKIRIRK ++E+KD+ 
Sbjct: 68  LVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEAKDES 127

Query: 130 NRKEGSAQGVLVGPAGSSE 148
            RKEGSAQGVLVGPAG SE
Sbjct: 128 GRKEGSAQGVLVGPAGGSE 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356517732|ref|XP_003527540.1| PREDICTED: probable prefoldin subunit 2-like [Glycine max]

 Score =  236 bits (603), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 115/139 (82%), Positives = 126/139 (90%)

Query: 10  REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
           +EPVNEQ VANMY +MRSELNQIYSKITELEME SEH+LV NAI+PLD SR+CYRMIGGV
Sbjct: 8   KEPVNEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGV 67

Query: 70  LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
           LVERTI EVLPAVQRNKEG+EEV+ARLNEAL  KKKEIS+FEAKYKIRIRK ++E KD+ 
Sbjct: 68  LVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEVKDES 127

Query: 130 NRKEGSAQGVLVGPAGSSE 148
            RKEGSAQGVLVGPAG SE
Sbjct: 128 GRKEGSAQGVLVGPAGGSE 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806777|ref|NP_001241303.1| uncharacterized protein LOC100786369 [Glycine max] gi|255625941|gb|ACU13315.1| unknown [Glycine max]

 Score =  236 bits (601), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 126/139 (90%)

Query: 10  REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
           +EP+NEQ VANMY +MRSELNQIYSKITELEME SEH+LV NAI+PLD SR+CYRMIGGV
Sbjct: 8   KEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGV 67

Query: 70  LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
           LVERTI EVLPAVQRNKEG+EEV+ARLNEAL  KKKEIS+FEAKYKIRIRK ++E KD+ 
Sbjct: 68  LVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEAKYKIRIRKADAEVKDES 127

Query: 130 NRKEGSAQGVLVGPAGSSE 148
            RKEGSAQGVLVGPAG SE
Sbjct: 128 GRKEGSAQGVLVGPAGGSE 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225432674|ref|XP_002282531.1| PREDICTED: probable prefoldin subunit 2-like isoform 2 [Vitis vinifera]

 Score =  235 bits (600), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 115/148 (77%), Positives = 132/148 (89%)

Query: 1   MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSR 60
           MAG+A  + +EPVNEQ VAN+Y +MR+ELNQIYSKITELEME SEHSLVI AI+PLDPSR
Sbjct: 47  MAGKAGGDLKEPVNEQAVANIYGAMRAELNQIYSKITELEMEVSEHSLVIGAIQPLDPSR 106

Query: 61  KCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
           +CYRMIGGVLVERTI EVLPAVQRNKEG+EEVI+RLNEAL  KKKEI++FEAKYKIRIRK
Sbjct: 107 RCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEIAEFEAKYKIRIRK 166

Query: 121 PESESKDDGNRKEGSAQGVLVGPAGSSE 148
            + E KD+  +KEGSAQGVLVGPA ++E
Sbjct: 167 SDGEVKDENEKKEGSAQGVLVGPASTNE 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737057|emb|CBI26258.3| unnamed protein product [Vitis vinifera]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 115/148 (77%), Positives = 132/148 (89%)

Query: 1   MAGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSR 60
           MAG+A  + +EPVNEQ VAN+Y +MR+ELNQIYSKITELEME SEHSLVI AI+PLDPSR
Sbjct: 148 MAGKAGGDLKEPVNEQAVANIYGAMRAELNQIYSKITELEMEVSEHSLVIGAIQPLDPSR 207

Query: 61  KCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
           +CYRMIGGVLVERTI EVLPAVQRNKEG+EEVI+RLNEAL  KKKEI++FEAKYKIRIRK
Sbjct: 208 RCYRMIGGVLVERTIKEVLPAVQRNKEGLEEVISRLNEALEKKKKEIAEFEAKYKIRIRK 267

Query: 121 PESESKDDGNRKEGSAQGVLVGPAGSSE 148
            + E KD+  +KEGSAQGVLVGPA ++E
Sbjct: 268 SDGEVKDENEKKEGSAQGVLVGPASTNE 295

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806404|ref|NP_001241495.1| uncharacterized protein LOC100812005 [Glycine max] gi|255632434|gb|ACU16567.1| unknown [Glycine max]

 Score =  234 bits (596), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 113/139 (81%), Positives = 125/139 (89%)

Query: 10  REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
           +EP+NEQ VANMY +MRSELNQIYSKITELEME SEH+LV NAI+PLD SR+CYRMIGGV
Sbjct: 8   KEPINEQAVANMYAAMRSELNQIYSKITELEMEVSEHTLVTNAIQPLDQSRRCYRMIGGV 67

Query: 70  LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
           LVERTI EVLPAVQRNKEG+EEV+ARLNEAL  KKKEIS+FEA YKIRIRK ++E KD+ 
Sbjct: 68  LVERTIKEVLPAVQRNKEGLEEVVARLNEALEKKKKEISEFEANYKIRIRKADAEVKDES 127

Query: 130 NRKEGSAQGVLVGPAGSSE 148
            RKEGSAQGVLVGPAG SE
Sbjct: 128 GRKEGSAQGVLVGPAGGSE 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	148
TAIR|locus:2077071	148	PDF2 "prefoldin 2" [Arabidopsi	0.932	0.932	0.712	7.7e-48
UNIPROTKB|F1S192	154	PFDN2 "Uncharacterized protein	0.851	0.818	0.480	1e-27
UNIPROTKB|A1A4P5	154	PFDN2 "Prefoldin subunit 2" [B	0.851	0.818	0.473	2.2e-27
UNIPROTKB|Q9UHV9	154	PFDN2 "Prefoldin subunit 2" [H	0.851	0.818	0.473	2.2e-27
MGI|MGI:1276111	154	Pfdn2 "prefoldin 2" [Mus muscu	0.851	0.818	0.473	2.8e-27
RGD|1591406	154	Pfdn2 "prefoldin subunit 2" [R	0.851	0.818	0.473	2.8e-27
ZFIN|ZDB-GENE-060519-27	156	pfdn2 "prefoldin subunit 2" [D	0.959	0.910	0.413	7.3e-27
UNIPROTKB|F1PLU5	154	PFDN2 "Uncharacterized protein	0.851	0.818	0.458	9.4e-27
DICTYBASE|DDB_G0267594	116	pfdn2 "prefoldin subunit 2" [D	0.756	0.965	0.464	1.4e-25
ASPGD|ASPL0000010413	118	AN4033 [Emericella nidulans (t	0.743	0.932	0.363	4e-19

TAIR|locus:2077071 PDF2 "prefoldin 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 500 (181.1 bits), Expect = 7.7e-48, P = 7.7e-48
 Identities = 99/139 (71%), Positives = 118/139 (84%)

Query:    10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGV 69
             REP NEQ V NMY   RSEL+QIYS IT+LEM+ SEHSLVINAI+PLD SRKC+RMIGGV
Sbjct:    11 REPPNEQAVLNMYEGKRSELSQIYSNITDLEMQVSEHSLVINAIQPLDQSRKCFRMIGGV 70

Query:    70 LVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESESKDDG 129
             LVERTI EVLPAVQRNK+G+EEV+ +L E L  KKK++++FEAKYKIRI K E ++K+ G
Sbjct:    71 LVERTIKEVLPAVQRNKDGLEEVVRKLYETLEKKKKDLTEFEAKYKIRITKQE-DNKEGG 129

Query:   130 NRKEGSAQGVLVGPAGSSE 148
             N+KEG+AQGVLVG A SS+
Sbjct:   130 NKKEGNAQGVLVGAASSSQ 148

GO:0005737 "cytoplasm" evidence=ISM

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|F1S192 PFDN2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 310 (114.2 bits), Expect = 1.0e-27, P = 1.0e-27
 Identities = 63/131 (48%), Positives = 90/131 (68%)

Query:    15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
             EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct:    24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query:    75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
             + EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP S+   +G 
Sbjct:    83 VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPTSKENSEGA 142

Query:   131 RKEGSAQGVLV 141
               + S+ GVLV
Sbjct:   143 GAKASSAGVLV 153

GO:0006457 "protein folding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|A1A4P5 PFDN2 "Prefoldin subunit 2" [Bos taurus (taxid:9913)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/131 (47%), Positives = 90/131 (68%)

Query:    15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
             EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct:    24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query:    75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
             + EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct:    83 VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query:   131 RKEGSAQGVLV 141
               + S+ GVLV
Sbjct:   143 GAKASSAGVLV 153

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|Q9UHV9 PFDN2 "Prefoldin subunit 2" [Homo sapiens (taxid:9606)]

 Score = 307 (113.1 bits), Expect = 2.2e-27, P = 2.2e-27
 Identities = 62/131 (47%), Positives = 90/131 (68%)

Query:    15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
             EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct:    24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query:    75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
             + EVLPA++ NKE I+++I  L + L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct:    83 VKEVLPALENNKEQIQKIIETLTQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query:   131 RKEGSAQGVLV 141
               + S+ GVLV
Sbjct:   143 GAKASSAGVLV 153

GO:0051082 "unfolded protein binding" evidence=NAS

GO:0016272 "prefoldin complex" evidence=NAS

GO:0006457 "protein folding" evidence=NAS;TAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

MGI|MGI:1276111 Pfdn2 "prefoldin 2" [Mus musculus (taxid:10090)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/131 (47%), Positives = 91/131 (69%)

Query:    15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
             EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct:    24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query:    75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
             + EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct:    83 VKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query:   131 RKEGSAQGVLV 141
               + S+ GVLV
Sbjct:   143 GAKASSAGVLV 153

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005829 "cytosol" evidence=TAS

GO:0006457 "protein folding" evidence=IDA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

RGD|1591406 Pfdn2 "prefoldin subunit 2" [Rattus norvegicus (taxid:10116)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 62/131 (47%), Positives = 91/131 (69%)

Query:    15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
             EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +RKCYRM+GGVLVERT
Sbjct:    24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDETRKCYRMVGGVLVERT 82

Query:    75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
             + EVLPA++ NKE I+++I  L++ L AK KE+++F  K+ IR+     KP ++   +G 
Sbjct:    83 VKEVLPALEGNKEQIQKIIETLSQQLQAKGKELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query:   131 RKEGSAQGVLV 141
               + S+ GVLV
Sbjct:   143 GAKSSSAGVLV 153

GO:0005634 "nucleus" evidence=IEA;ISO

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=IEA;ISO

GO:0006457 "protein folding" evidence=IEA;ISO

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

ZFIN|ZDB-GENE-060519-27 pfdn2 "prefoldin subunit 2" [Danio rerio (taxid:7955)]

 Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
 Identities = 60/145 (41%), Positives = 96/145 (66%)

Query:     2 AGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRK 61
             +G++  ++  P  EQ+VA  +  MR E   + SK  E EME +EHSLVI+ +K +DPSRK
Sbjct:    10 SGKSGAKQSTPSAEQVVAT-FQRMRQEQRSMASKAAEFEMEINEHSLVIDTLKEVDPSRK 68

Query:    62 CYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR-IRK 120
             C+R++GGVLVERT+ EVLPA++ NKE I +++  LN  +  K +E++++  +Y IR + +
Sbjct:    69 CFRLVGGVLVERTVKEVLPALENNKEQISKIVETLNTQMQVKGRELTEYRERYNIRLVGE 128

Query:   121 PESESKDDGNRKEGSAQGVLVGPAG 145
              + + K D ++ + S +G   G AG
Sbjct:   129 DDKQGKADASQAKDS-EGGSKGGAG 152

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1PLU5 PFDN2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 60/131 (45%), Positives = 90/131 (68%)

Query:    15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERT 74
             EQ++A  +  +R E   + SK  ELEME +EHSLVI+ +K +D +R+CYRM+GGVLVERT
Sbjct:    24 EQVIAG-FNRLRQEQRGLASKAAELEMELNEHSLVIDTLKEVDEARRCYRMVGGVLVERT 82

Query:    75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI----RKPESESKDDGN 130
             + EVLPA++ NKE I+++I  L + L AK +E+++F  K+ IR+     KP ++   +G 
Sbjct:    83 VKEVLPALENNKEQIQKIIETLTQQLQAKGRELNEFREKHNIRLMGEDEKPAAKENSEGA 142

Query:   131 RKEGSAQGVLV 141
               + S+ GVLV
Sbjct:   143 GAKSSSAGVLV 153

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

DICTYBASE|DDB_G0267594 pfdn2 "prefoldin subunit 2" [Dictyostelium discoideum (taxid:44689)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 52/112 (46%), Positives = 85/112 (75%)

Query:     7 TERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMI 66
             +++++ + E  +   Y  ++S+  QI S+I+E E +  E+ LVINAI+ L+ +RKC+RM+
Sbjct:     2 SQQKQQLTENQIIEHYKDLKSQQQQIISRISEFESDVGEYGLVINAIQNLESNRKCFRMV 61

Query:    67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI 118
             GGVLVERT+ EVLP +++N++GI+EV+ +L+E L+ K KE++DF A YKI+I
Sbjct:    62 GGVLVERTVGEVLPQIKQNRDGIKEVVKKLDENLSIKTKELNDFVALYKIKI 113

GO:0051082 "unfolded protein binding" evidence=IEA;ISS

GO:0016272 "prefoldin complex" evidence=IEA;ISS

GO:0006457 "protein folding" evidence=IEA;ISS

GO:0044351 "macropinocytosis" evidence=RCA

ASPGD|ASPL0000010413 AN4033 [Emericella nidulans (taxid:162425)]

 Score = 229 (85.7 bits), Expect = 4.0e-19, P = 4.0e-19
 Identities = 40/110 (36%), Positives = 74/110 (67%)

Query:    12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLV 71
             P  +Q +   YT+ ++ L Q+  KI ++E EA EH LVI+ ++PL   R C+RM+ GVLV
Sbjct:     9 PKKQQELQAQYTNFKNTLQQLAQKIGDIEQEAEEHKLVIDTLEPLPQDRTCFRMVNGVLV 68

Query:    72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKP 121
             ERT+++VLP ++ N +G+++V+  + +   +K+ E+ +++ K  I++ +P
Sbjct:    69 ERTVADVLPTLKTNSDGLKQVLEDMLKQYKSKQSELDNWKKKNNIQVVQP 118

GO:0016272 "prefoldin complex" evidence=IEA

GO:0015631 "tubulin binding" evidence=IEA

GO:0007021 "tubulin complex assembly" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O70591	PFD2_MOUSE	No assigned EC number	0.4732	0.8513	0.8181	yes	no
B0BN18	PFD2_RAT	No assigned EC number	0.4732	0.8513	0.8181	yes	no
Q9UHV9	PFD2_HUMAN	No assigned EC number	0.4732	0.8513	0.8181	yes	no
Q9LJ98	PFD2_ARATH	No assigned EC number	0.7122	0.9324	0.9324	yes	no
A1A4P5	PFD2_BOVIN	No assigned EC number	0.4732	0.8513	0.8181	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	148
pfam01920	106	pfam01920, Prefoldin_2, Prefoldin subunit	2e-19

>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit

 Score = 77.3 bits (191), Expect = 2e-19
 Identities = 28/105 (26%), Positives = 55/105 (52%)

Query: 16  QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTI 75
           Q + N +  ++ +L  +  +I +LE +  E  LV+  ++ LD   K Y++IG VLV++  
Sbjct: 1   QELINKFQQLQQQLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDK 60

Query: 76  SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK 120
            EV   ++  KE +E+ I  L + L   +KE+ + + +      +
Sbjct: 61  EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEELYKLFGQ 105

This family includes prefoldin subunits that are not detected by pfam02996. Length = 106

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	148
KOG4098	140	consensus Molecular chaperone Prefoldin, subunit 2	100.0
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	99.94
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.9
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.9
KOG3478	120	consensus Prefoldin subunit 6, KE2 family [Posttra	99.89
PRK09343	121	prefoldin subunit beta; Provisional	99.89
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.86
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	99.58
PRK03947	140	prefoldin subunit alpha; Reviewed	99.58
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	99.44
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	99.41
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	99.15
PRK14011	144	prefoldin subunit alpha; Provisional	99.11
PRK01203	130	prefoldin subunit alpha; Provisional	98.67
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	98.54
KOG1760	131	consensus Molecular chaperone Prefoldin, subunit 4	97.33
KOG3048	153	consensus Molecular chaperone Prefoldin, subunit 5	97.01
PRK03947	140	prefoldin subunit alpha; Reviewed	96.7
KOG3501	114	consensus Molecular chaperone Prefoldin, subunit 1	96.55
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	95.96
KOG3313	187	consensus Molecular chaperone Prefoldin, subunit 3	95.88
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	94.51
PF13758	99	Prefoldin_3: Prefoldin subunit	94.18
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	93.93
PRK09343	121	prefoldin subunit beta; Provisional	93.85
PRK11637	428	AmiB activator; Provisional	93.45
PRK11637	428	AmiB activator; Provisional	92.43
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	92.33
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	92.06
PRK14011	144	prefoldin subunit alpha; Provisional	91.86
PF08946	46	Osmo_CC: Osmosensory transporter coiled coil; Inte	91.82
PRK03918	880	chromosome segregation protein; Provisional	90.91
PRK02224	880	chromosome segregation protein; Provisional	90.86
PF13118	126	DUF3972: Protein of unknown function (DUF3972)	90.46
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	90.44
PRK01156	895	chromosome segregation protein; Provisional	90.13
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	88.82
PRK01203	130	prefoldin subunit alpha; Provisional	88.63
PF04949	159	Transcrip_act: Transcriptional activator; InterPro	88.02
PF12718	143	Tropomyosin_1: Tropomyosin like; InterPro: IPR0005	86.74
PF14712	92	Snapin_Pallidin: Snapin/Pallidin	85.25
PRK03918	880	chromosome segregation protein; Provisional	84.8
PF08657	259	DASH_Spc34: DASH complex subunit Spc34 ; InterPro:	84.58
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	84.22
PRK00736	68	hypothetical protein; Provisional	83.51
KOG3047	157	consensus Predicted transcriptional regulator UXT	83.08
PRK00295	68	hypothetical protein; Provisional	82.68
KOG3335	181	consensus Predicted coiled-coil protein [General f	81.26
PRK04325	74	hypothetical protein; Provisional	81.1
PF09006	46	Surfac_D-trimer: Lung surfactant protein D coiled-	80.58

>KOG4098 consensus Molecular chaperone Prefoldin, subunit 2 [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.3e-36  Score=225.82  Aligned_cols=125  Identities=52%  Similarity=0.815  Sum_probs=117.8

Q ss_pred             CCCc--CccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHH
Q 032018            1 MAGR--AETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEV   78 (148)
Q Consensus         1 ~~~~--~~~~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea   78 (148)
                      ||++  ..|.++.|++.+.++++|+.|+++++.|++++.+|+++++||.+|+++|++++|+|+|||||||||||+||.+|
T Consensus         1 m~~a~~~~~~~~~~~~q~~v~a~yn~~r~el~~ia~ki~~LE~d~~EH~lVi~tlk~~dp~RKCfRmIgGvLVErTVkeV   80 (140)
T KOG4098|consen    1 MAAAQSGSGTAKEPSSQQAVVAKYNALRSELQQIASKITDLEMDLREHKLVIETLKDLDPTRKCFRMIGGVLVERTVKEV   80 (140)
T ss_pred             CchhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcChhhHHHHHhccchhhhhHHHH
Confidence            5555  33666778888899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCC
Q 032018           79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPESES  125 (148)
Q Consensus        79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~~~~~  125 (148)
                      +|.|+.++++|+..++.|..+|..+.++|++|+++|+|+|.++++.+
T Consensus        81 lP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~hkIrv~~e~~~~  127 (140)
T KOG4098|consen   81 LPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKDHKIRVVKEKESA  127 (140)
T ss_pred             hHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcceeeecchhch
Confidence            99999999999999999999999999999999999999999987753

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=99.94  E-value=3.4e-26  Score=167.01  Aligned_cols=107  Identities=15%  Similarity=0.301  Sum_probs=104.0

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018           12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE   91 (148)
Q Consensus        12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~   91 (148)
                      ||.+++++.+||++|++++.+.++++.|+.+++||++|+++|+.++||++|||+||||||++|++|++++|++|+++|+.
T Consensus         2 ~~~~q~~~~~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~   81 (110)
T TIGR02338         2 PPQVQNQLAQLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLEL   81 (110)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018           92 VIARLNEALAAKKKEISDFEAKYKIRI  118 (148)
Q Consensus        92 ~i~~l~~ql~~~~kel~~~~~k~~i~i  118 (148)
                      .|+.|++++..+++++.+++.+++-.+
T Consensus        82 ~i~~lek~~~~l~~~l~e~q~~l~~~~  108 (110)
T TIGR02338        82 RVKTLQRQEERLREQLKELQEKIQEAL  108 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999887443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.90  E-value=3.4e-23  Score=153.87  Aligned_cols=113  Identities=16%  Similarity=0.298  Sum_probs=108.6

Q ss_pred             CCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHH
Q 032018            9 RREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEG   88 (148)
Q Consensus         9 ~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~   88 (148)
                      +.-||.+++.+++||+||++++.++.++++++++|+|++.|+++|+.+++|+.+||.||++||+.+.++|+..|++|+|+
T Consensus         2 ~~lpp~~q~~l~q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~VG~llvk~~k~~~~~eL~er~E~   81 (119)
T COG1382           2 EQLPPEVQAQLAQLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKVGNLLVKVSKEEAVDELEERKET   81 (119)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHhhhHHhhhhHHHHHHHHHHHHHH
Confidence            35689999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 032018           89 IEEVIARLNEALAAKKKEISDFEAKYKIRIRKP  121 (148)
Q Consensus        89 L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~  121 (148)
                      |+.++++|++|...+++++.+++.+++-++.+.
T Consensus        82 Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~  114 (119)
T COG1382          82 LELRIKTLEKQEEKLQERLEELQSEIQKALGDA  114 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence            999999999999999999999999998777653

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.90  E-value=4.9e-23  Score=149.00  Aligned_cols=100  Identities=18%  Similarity=0.315  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR   95 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~   95 (148)
                      ++++.+||+|+++++.+.++++.|+++++||+.|+++|..++||++||++||+|||++++++|.+.|++++++|+..+++
T Consensus         2 q~~~~~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~   81 (105)
T cd00632           2 QEQLAQLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKR   81 (105)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 032018           96 LNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        96 l~~ql~~~~kel~~~~~k~~  115 (148)
                      +++++..+.+++.+++.++.
T Consensus        82 l~~~~~~l~~~~~elk~~l~  101 (105)
T cd00632          82 LERQEEDLQEKLKELQEKIQ  101 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998865

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>KOG3478 consensus Prefoldin subunit 6, KE2 family [Posttranslational modification, protein turnover, chaperones]

Probab=99.89  E-value=4.5e-23  Score=151.03  Aligned_cols=102  Identities=24%  Similarity=0.379  Sum_probs=98.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018           13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV   92 (148)
Q Consensus        13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~   92 (148)
                      ...++.+++||+||.++...+..++.|+++|.|++.|+++|+.|++|++|||++|||||+++.+|+..+|.+|++||+.+
T Consensus         5 ~kmee~~~kyq~LQk~l~k~~~~rqkle~qL~Enk~V~~Eldlle~d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~E   84 (120)
T KOG3478|consen    5 KKMEEEANKYQNLQKELEKYVESRQKLETQLQENKIVLEELDLLEEDSNVYKLIGPVLVKQELEEARTNVGKRLEFISKE   84 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhcccchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 032018           93 IARLNEALAAKKKEISDFEAKY  114 (148)
Q Consensus        93 i~~l~~ql~~~~kel~~~~~k~  114 (148)
                      |++++.++.++++++.+.+...
T Consensus        85 ikr~e~~i~d~q~e~~k~R~~v  106 (120)
T KOG3478|consen   85 IKRLENQIRDSQEEFEKQREAV  106 (120)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999988764

>PRK09343 prefoldin subunit beta; Provisional

Probab=99.89  E-value=9.3e-23  Score=151.72  Aligned_cols=112  Identities=16%  Similarity=0.281  Sum_probs=107.9

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHH
Q 032018           10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGI   89 (148)
Q Consensus        10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L   89 (148)
                      .-||.+++.+.+||++|++++.+.++++.|+.+++|+++|+++|+.+++|++|||+||||||++++++++.+|++|+++|
T Consensus         4 ~~~~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~i   83 (121)
T PRK09343          4 NIPPEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELL   83 (121)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            35899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 032018           90 EEVIARLNEALAAKKKEISDFEAKYKIRIRKP  121 (148)
Q Consensus        90 ~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~~  121 (148)
                      +..|++|+++...+++.+.+++.+++-.+.+.
T Consensus        84 e~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~  115 (121)
T PRK09343         84 ELRSRTLEKQEKKLREKLKELQAKINEMLSKY  115 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            99999999999999999999999998777653

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.86  E-value=1.6e-20  Score=133.64  Aligned_cols=105  Identities=23%  Similarity=0.413  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHH
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIAR   95 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~   95 (148)
                      |+++.+|+.++.++..+.+++..++.++++|+.|+++|..++||++|||+||++||+++++++++.|+++++.++..|+.
T Consensus         1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~   80 (106)
T PF01920_consen    1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKK   80 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhcccccC
Q 032018           96 LNEALAAKKKEISDFEAKYKIRIRK  120 (148)
Q Consensus        96 l~~ql~~~~kel~~~~~k~~i~i~~  120 (148)
                      |++++..+.+++.+++.++...+.+
T Consensus        81 l~~~~~~l~~~l~~~~~~l~~~~~~  105 (106)
T PF01920_consen   81 LEKQLKYLEKKLKELKKKLYELFGQ  105 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCCCS-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999999988764

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.58  E-value=6.7e-14  Score=102.60  Aligned_cols=100  Identities=20%  Similarity=0.393  Sum_probs=96.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------------------CCCceeeeec-ceee
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD-----------------------PSRKCYRMIG-GVLV   71 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~dr~~yrlVG-~VLV   71 (148)
                      +++...|++|+++++.+.+++..+...+.|++.++++|+.++                       ++.+||..|| |++|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~v   81 (129)
T cd00890           2 QELAAQLQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEE
Confidence            578899999999999999999999999999999999999997                       7899999999 9999


Q ss_pred             eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      +++.++|.+.|++|++.|+..++.+++++..+.++++.++..+.
T Consensus        82 e~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~  125 (129)
T cd00890          82 EKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQ  125 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999988765

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=99.58  E-value=6.9e-14  Score=105.24  Aligned_cols=105  Identities=15%  Similarity=0.318  Sum_probs=98.8

Q ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------CCceee-------------ee
Q 032018           11 EPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-----------SRKCYR-------------MI   66 (148)
Q Consensus        11 ~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----------dr~~yr-------------lV   66 (148)
                      ..+.++++...|++|+++++.|.+++..|...+.|+..++++|+.+++           ++.||.             ++
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG   83 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG   83 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence            468899999999999999999999999999999999999999999985           577776             88


Q ss_pred             cceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           67 GGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        67 G~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      +||+|+.+++||++.|++|++.|+..++.++.++..+.++++.+....+
T Consensus        84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l~  132 (140)
T PRK03947         84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQELQ  132 (140)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8999999999999999999999999999999999999999999988766

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=99.44  E-value=4.9e-12  Score=93.39  Aligned_cols=100  Identities=20%  Similarity=0.314  Sum_probs=93.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeee-----------------------cceeee
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMI-----------------------GGVLVE   72 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlV-----------------------G~VLVe   72 (148)
                      +++..+|++|+++++.|.+++..|...+.+++.++++|+.++++..|+.+|                       +||+||
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            578899999999999999999999999999999999999998766677666                       999999


Q ss_pred             ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      +++++|++.|++|++.|+..++.+++.+..+.++++.+....+
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999987654

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=99.41  E-value=5.8e-12  Score=93.32  Aligned_cols=100  Identities=18%  Similarity=0.324  Sum_probs=95.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------------------CCceeeeecceee
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP------------------------SRKCYRMIGGVLV   71 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~------------------------dr~~yrlVG~VLV   71 (148)
                      +++...+++|+.+++.+.+++..|...+.|+..++++|+.+++                        ++.|+.+++|++|
T Consensus         2 ~~l~~~~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~~~~~i~~~~~v~v~iG~g~~v   81 (129)
T cd00584           2 EQLAAQLQVLQQEIEELQQELARLNEAIAEYEQAKETLETLKKADEGKETLVPLGAGVFVKAKVKDTDKVLVDLGTGYYV   81 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCeEEeEEeCCCCEEEEEcCCCEEE
Confidence            5688999999999999999999999999999999999999976                        7889999999999


Q ss_pred             eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      ++++++|++.+++|++.|+..++.+++++..+.++++.+...+.
T Consensus        82 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~  125 (129)
T cd00584          82 EKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQ  125 (129)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999987654

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.3e-09  Score=83.84  Aligned_cols=105  Identities=19%  Similarity=0.300  Sum_probs=95.1

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC------------------------CCceeeeec
Q 032018           12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP------------------------SRKCYRMIG   67 (148)
Q Consensus        12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~------------------------dr~~yrlVG   67 (148)
                      .++++++.+++|.|+.+++.|.+++..|...++|+..+++||+++..                        |..+.-++.
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs   84 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS   84 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence            46889999999999999999999999999999999999999988732                        334447788


Q ss_pred             ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           68 GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        68 ~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      ||-|+++.++|+..|++|++.|++.+..++..+.++...+..+....+-
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~q~  133 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEAQQ  133 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999998877664

>PRK14011 prefoldin subunit alpha; Provisional

Probab=99.11  E-value=2.3e-09  Score=82.26  Aligned_cols=108  Identities=15%  Similarity=0.232  Sum_probs=98.0

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC---------------------Cceeeeecceee
Q 032018           13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS---------------------RKCYRMIGGVLV   71 (148)
Q Consensus        13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d---------------------r~~yrlVG~VLV   71 (148)
                      ..+++++..|+.|+++++.|.+.++.|..-.+++...+++|+.++++                     ..+.-++.|+.|
T Consensus         3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V   82 (144)
T PRK14011          3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL   82 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence            46788999999999999999999999999999999999999988544                     444478899999


Q ss_pred             eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032018           72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK  120 (148)
Q Consensus        72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~  120 (148)
                      ++|.++|+..++.|+++|++.++.|...++++...+++++..+.-++.+
T Consensus        83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~~~  131 (144)
T PRK14011         83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRAQA  131 (144)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999877766654

>PRK01203 prefoldin subunit alpha; Provisional

Probab=98.67  E-value=1e-06  Score=66.80  Aligned_cols=96  Identities=16%  Similarity=0.186  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC-----------------------CCCceeeeecceeee
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD-----------------------PSRKCYRMIGGVLVE   72 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~-----------------------~dr~~yrlVG~VLVe   72 (148)
                      +++.++|+.++++.+.|.++++.|....+++...++.|+.++                       +|..+.-++.|+.||
T Consensus         3 ~~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VE   82 (130)
T PRK01203          3 RDVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIA   82 (130)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEE
Confidence            568899999999999999999999999999999999998863                       234444788999999


Q ss_pred             ecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           73 RTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFE  111 (148)
Q Consensus        73 ~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~  111 (148)
                      ++.++++..|+++++.|+..+.....++..+...+..+.
T Consensus        83 K~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         83 EERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999888876

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=98.54  E-value=4.2e-07  Score=65.96  Aligned_cols=91  Identities=20%  Similarity=0.368  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC---C--------Ccee-------------eeecceeeeecHhHHHH
Q 032018           25 MRSELNQIYSKITELEMEASEHSLVINAIKPLDP---S--------RKCY-------------RMIGGVLVERTISEVLP   80 (148)
Q Consensus        25 Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~---d--------r~~y-------------rlVG~VLVe~tv~Ea~~   80 (148)
                      |+++++.+.+++..|...+.|+..++++|+.++.   +        ..+|             .++.|+.|+.|.++|+.
T Consensus         1 l~~~l~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~lvplg~~~~v~g~i~~~~~vlV~lG~~~~vE~s~~eA~~   80 (120)
T PF02996_consen    1 LQEELENLQQQIEQLEEQIEEYEEAKETLEELKKEKKEHEILVPLGSGVFVPGKIPDTDKVLVSLGAGYYVEMSLEEAIE   80 (120)
T ss_dssp             HCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--TT-EEEEEECTTEEEEEE-SSTTEEEEEEETTEEEEEEHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeecCCCCeEEEEEeCCCCEEEEEeeCCeEEEecHHHHHH
Confidence            3456677888888888888888888888887754   2        2233             88999999999999999


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      .+++|++.|+..++.+.+++..+..++..+...+.
T Consensus        81 ~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~  115 (120)
T PF02996_consen   81 FLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQ  115 (120)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999988776553

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]

Probab=97.33  E-value=0.011  Score=44.55  Aligned_cols=99  Identities=18%  Similarity=0.287  Sum_probs=84.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC-CceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018           15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS-RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI   93 (148)
Q Consensus        15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d-r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i   93 (148)
                      -|+-+++|-++-...-.+...+...-.++.-.+-+.+++.-+++| .-|==.||.|.+--..+.+..-|++.++.+.+.|
T Consensus        18 DQq~iN~Fsrl~~R~~~lk~dik~~k~~~enledA~~EieL~Dedd~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i   97 (131)
T KOG1760|consen   18 DQQNINEFSRLNSRKDDLKADIKEAKTEIENLEDASNEIELLDEDDEDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEI   97 (131)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHhhcCccccccceehhhhheeccHHHHHHHHHHHHHHHHHHH
Confidence            455788888888877777777777777777788888888888877 4444468999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032018           94 ARLNEALAAKKKEISDFEAK  113 (148)
Q Consensus        94 ~~l~~ql~~~~kel~~~~~k  113 (148)
                      +.++.....+..+|.+++.-
T Consensus        98 ~~les~~e~I~~~m~~LK~~  117 (131)
T KOG1760|consen   98 EELESELESISARMDELKKV  117 (131)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999998864

>KOG3048 consensus Molecular chaperone Prefoldin, subunit 5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.01  E-value=0.055  Score=41.93  Aligned_cols=117  Identities=14%  Similarity=0.173  Sum_probs=87.6

Q ss_pred             CCcCccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------------
Q 032018            2 AGRAETERREPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-----------------------   58 (148)
Q Consensus         2 ~~~~~~~~~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----------------------   58 (148)
                      |.-..+..=...+.+++-+=-+++.++++-+...++.|-.-..-+...++.|+.+.+                       
T Consensus         2 a~~s~~idltkLsleQL~~lk~q~dqEl~~lq~Sl~~L~~aq~k~~~~~~aln~~~~~~eGk~~LVPLTsSlYVPGkl~d   81 (153)
T KOG3048|consen    2 AEESKGIDLTKLSLEQLGALKKQFDQELNFLQDSLNALKGAQTKYEESIAALNDVQAANEGKKLLVPLTSSLYVPGKLSD   81 (153)
T ss_pred             CCcccCCChhhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCCeEEEecccceeccceecc
Confidence            333333333456777777777888889999988888888877777777777776622                       


Q ss_pred             -CCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018           59 -SRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRI  118 (148)
Q Consensus        59 -dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i  118 (148)
                       ++.+.-.+-|..||.|.++++.....++++|.+.+++++.-+.++..-......-++-++
T Consensus        82 ~~k~lVDIGTGYyVEK~~e~akdyfkRKve~l~kq~e~i~~i~~eK~~~~~~v~~v~q~Kv  142 (153)
T KOG3048|consen   82 NSKFLVDIGTGYYVEKDAEDAKDYFKRKVEYLTKQIEQIEGILKEKTRTRASVMDVLQAKV  142 (153)
T ss_pred             ccceeEeccCceEEeechHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence             233335667899999999999999999999999999999999888877666554444333

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=96.70  E-value=0.0076  Score=45.10  Aligned_cols=99  Identities=13%  Similarity=0.249  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----Cc------e-eeeecceeeeecHhH---HHH---
Q 032018           18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS----RK------C-YRMIGGVLVERTISE---VLP---   80 (148)
Q Consensus        18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----r~------~-yrlVG~VLVe~tv~E---a~~---   80 (148)
                      ...++++|+.+++.+...++.|..++......+.++..+-..    ..      + |-+..++.|+-++.+   |+=   
T Consensus         4 ~~~~l~~l~~~~~~l~~~~~~l~~~~~~l~~~~~e~~~~~e~l~~l~~~~~~~e~lvplg~~~yv~~~v~~~~kV~v~lG   83 (140)
T PRK03947          4 SEQELEELAAQLQALQAQIEALQQQLEELQASINELDTAKETLEELKSKGEGKETLVPIGAGSFVKAKVKDKDKVIVSLG   83 (140)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCCeEEEEcCCCcEEEEEecCCCeEEEEcC
Confidence            456889999999999999999999999999999998777532    22      1 234557888777743   332   


Q ss_pred             -------HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           81 -------AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        81 -------~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                             .+++-+++|+..++.|++++..+.+.+..++..+.-
T Consensus        84 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~  126 (140)
T PRK03947         84 AGYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQ  126 (140)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                   899999999999999999999999999999988763

>KOG3501 consensus Molecular chaperone Prefoldin, subunit 1 [Posttranslational modification, protein turnover, chaperones]

Probab=96.55  E-value=0.02  Score=42.21  Aligned_cols=99  Identities=14%  Similarity=0.210  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHH
Q 032018           17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARL   96 (148)
Q Consensus        17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l   96 (148)
                      ++..+-..-|+++..+.-|+..++-.+.-..+.-.+|..+-++..+|+.+|..++..++.-+...++......+..|+.|
T Consensus         7 ~lQ~K~~dtqq~~~~~~vQi~~~nr~kk~~~l~~ke~~~~~de~~~Y~svgrmF~l~dk~a~~s~leak~k~see~IeaL   86 (114)
T KOG3501|consen    7 QLQEKAVDTQQQLRTIMVQIAAKNRAKKISELAKKELEDVGDEKAVYTSVGRMFMLSDKAAVRSHLEAKMKSSEEKIEAL   86 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHH
Confidence            45666667778888888888888888888888888888888889999999999999999988888888888888888887


Q ss_pred             HHHHHHHHHHHHHHHHHhc
Q 032018           97 NEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        97 ~~ql~~~~kel~~~~~k~~  115 (148)
                      ++.-.=+++...+-...++
T Consensus        87 qkkK~YlEk~v~eaE~nLr  105 (114)
T KOG3501|consen   87 QKKKTYLEKTVSEAEQNLR  105 (114)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            7766666666555444433

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=95.96  E-value=0.032  Score=40.86  Aligned_cols=94  Identities=11%  Similarity=0.185  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee--eecceee--------eecHhHHH-------------
Q 032018           23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR--MIGGVLV--------ERTISEVL-------------   79 (148)
Q Consensus        23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yr--lVG~VLV--------e~tv~Ea~-------------   79 (148)
                      ++|..+++.+.+++..|..++.+....+.+++..-+.=.-++  -...+||        +-++.+.-             
T Consensus         2 qql~~q~~ql~~~i~~l~~~i~~l~~~i~e~~~~~~~L~~l~~~~~~~~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE   81 (126)
T TIGR00293         2 QQLAAELQILQQQVESLQAQIAALRALIAELETAIETLEDLKGAEGKETLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVE   81 (126)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEE
Confidence            688999999999999999999999999999988753111111  1345777        44444443             


Q ss_pred             HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           80 PAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        80 ~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      ..+++-+++++.+++.+++++..+.+.+..+++.+..
T Consensus        82 ~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~  118 (126)
T TIGR00293        82 KDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQ  118 (126)
T ss_pred             ecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999988763

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]

Probab=95.88  E-value=0.17  Score=40.42  Aligned_cols=95  Identities=11%  Similarity=0.183  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC---------------------------CCCCceeeeecc
Q 032018           16 QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPL---------------------------DPSRKCYRMIGG   68 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l---------------------------~~dr~~yrlVG~   68 (148)
                      .-+...|+++.-=..++..++..|...+-+.+.-|+-+..+                           ++|.+|-=++..
T Consensus        40 ~~~~E~~~kYkfme~~l~a~~~~l~~kIPd~entLeiv~~l~~~~~~~~s~~t~f~lsd~vy~ka~V~~~~kV~LWLGAn  119 (187)
T KOG3313|consen   40 KKLQERYGKYKFMEASLLAQKRRLKTKIPDIENTLEIVQTLIAKKDEGESFETTFLLSDGVYTKASVPPTDKVYLWLGAN  119 (187)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHhCcccCcceeEEEEecccceeeeecCCcCeEEEEecce
Confidence            44455555555555566777777777777776666554333                           334566678999


Q ss_pred             eeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           69 VLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF  110 (148)
Q Consensus        69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~  110 (148)
                      |++|-+++||..-|++++....+.++.++..+.-++.++...
T Consensus       120 VMlEY~leEAeaLLkknl~sa~k~l~~~~~DldfLrdQvTTt  161 (187)
T KOG3313|consen  120 VMLEYDLEEAEALLKKNLTSAVKSLDVLEEDLDFLRDQVTTT  161 (187)
T ss_pred             eEEEecHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhceee
Confidence            999999999999999999999999999999999888887643

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=94.51  E-value=0.15  Score=36.49  Aligned_cols=95  Identities=12%  Similarity=0.102  Sum_probs=72.7

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE   90 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~   90 (148)
                      ..+.+..+++.+..+.+.|..++.+.+.-+.|...+-+.   +..+.   .||=..--==+..++++-+..++.+++.++
T Consensus         7 ~~q~l~~~~~~l~~~~~~l~~~~~E~~~v~~EL~~l~~d~~vy~~VG---~vfv~~~~~ea~~~Le~~~e~le~~i~~l~   83 (105)
T cd00632           7 QLQQLQQQLQAYIVQRQKVEAQLNENKKALEELEKLADDAEVYKLVG---NVLVKQEKEEARTELKERLETIELRIKRLE   83 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchHHHHhh---hHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356677889999999999999999999999988876322   22222   233222222245678888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 032018           91 EVIARLNEALAAKKKEISDFE  111 (148)
Q Consensus        91 ~~i~~l~~ql~~~~kel~~~~  111 (148)
                      ..++.+.+++.+++.+|.+++
T Consensus        84 ~~~~~l~~~~~elk~~l~~~~  104 (105)
T cd00632          84 RQEEDLQEKLKELQEKIQQAQ  104 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998876

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF13758 Prefoldin_3: Prefoldin subunit

Probab=94.18  E-value=0.24  Score=35.99  Aligned_cols=43  Identities=21%  Similarity=0.328  Sum_probs=38.1

Q ss_pred             eecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 032018           65 MIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEI  107 (148)
Q Consensus        65 lVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel  107 (148)
                      +.-+-.|.++.+.|+..|..|++++..-|.+|++++..-+.++
T Consensus        56 lG~~~~i~Rt~~Qvv~~l~RRiDYV~~Ni~tleKql~~aE~kl   98 (99)
T PF13758_consen   56 LGEGQGITRTREQVVDVLSRRIDYVQQNIETLEKQLEAAENKL   98 (99)
T ss_pred             hCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445789999999999999999999999999999999877664

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=93.93  E-value=0.41  Score=36.91  Aligned_cols=97  Identities=13%  Similarity=0.244  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeec---ceee--------eecHhH----------
Q 032018           19 ANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIG---GVLV--------ERTISE----------   77 (148)
Q Consensus        19 ~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG---~VLV--------e~tv~E----------   77 (148)
                      ...+++|-.+++.+.+++..|.+++...+..+.+|...-.+=.-++..|   .+||        +-.+.+          
T Consensus         5 ~~~le~l~a~lq~l~~qie~L~~~i~~l~~~~~e~~~~~~tl~~lk~~~~g~E~LVpvGag~fv~~kv~~~~kviV~iGs   84 (145)
T COG1730           5 QQELEELAAQLQILQSQIESLQAQIAALNAAISELQTAIETLENLKGAGEGKEVLVPVGAGLFVKAKVKDMDKVIVSIGS   84 (145)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCceEEEEeccCceEEEEcCC
Confidence            3567888999999999999999999999999988887766655566555   3444        444444          


Q ss_pred             ---HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           78 ---VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        78 ---a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                         |...+++=+++|+++++.|++.+++++..+.++-..+.
T Consensus        85 g~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~  125 (145)
T COG1730          85 GYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIE  125 (145)
T ss_pred             ceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               45678999999999999999999999999999987776

>PRK09343 prefoldin subunit beta; Provisional

Probab=93.85  E-value=0.35  Score=35.81  Aligned_cols=99  Identities=16%  Similarity=0.183  Sum_probs=76.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE   90 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~   90 (148)
                      ..+.+..+++.+..+.+.+..++.+.+.-+.|.+.+-+.   .+.+   -++|=..--.=+..++.+=+..++.++..++
T Consensus        15 ~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~V---G~vlv~qd~~e~~~~l~~r~E~ie~~ik~le   91 (121)
T PRK09343         15 QLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIV---GNLLVKVDKTKVEKELKERKELLELRSRTLE   91 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHh---hHHHhhccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778889999999999999999999999998876432   3333   2233222333456788889999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           91 EVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        91 ~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      +..+.+.+++.+.+..|.++...+.
T Consensus        92 kq~~~l~~~l~e~q~~l~~ll~~~~  116 (121)
T PRK09343         92 KQEKKLREKLKELQAKINEMLSKYY  116 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            9999999999999999998887765

>PRK11637 AmiB activator; Provisional

Probab=93.45  E-value=1.5  Score=38.44  Aligned_cols=88  Identities=10%  Similarity=0.112  Sum_probs=50.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018           18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN   97 (148)
Q Consensus        18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~   97 (148)
                      ...+++++++++..+..++..+..++++...-++.|..==               .....-+..++..+..++..|+.++
T Consensus        45 ~~~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi---------------~~~~~~i~~~~~~i~~~~~ei~~l~  109 (428)
T PRK11637         45 NRDQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAI---------------SQASRKLRETQNTLNQLNKQIDELN  109 (428)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555555555555555555555544433333321100               0124455666677777777777777


Q ss_pred             HHHHHHHHHHHHHHHHhcccccC
Q 032018           98 EALAAKKKEISDFEAKYKIRIRK  120 (148)
Q Consensus        98 ~ql~~~~kel~~~~~k~~i~i~~  120 (148)
                      .++..+++++...++.++-++..
T Consensus       110 ~eI~~~q~~l~~~~~~l~~rlra  132 (428)
T PRK11637        110 ASIAKLEQQQAAQERLLAAQLDA  132 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777777777777777766543

>PRK11637 AmiB activator; Provisional

Probab=92.43  E-value=2.9  Score=36.68  Aligned_cols=85  Identities=12%  Similarity=0.122  Sum_probs=42.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018           13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV   92 (148)
Q Consensus        13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~   92 (148)
                      ..++++..+++++++++..+..++..++.++.....-+..+..-=               .+...-+..++.+++.++..
T Consensus        47 ~~l~~l~~qi~~~~~~i~~~~~~~~~~~~~l~~l~~qi~~~~~~i---------------~~~~~~i~~~~~ei~~l~~e  111 (428)
T PRK11637         47 DQLKSIQQDIAAKEKSVRQQQQQRASLLAQLKKQEEAISQASRKL---------------RETQNTLNQLNKQIDELNAS  111 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Confidence            334445555555555555555555555555444444333332110               12344455556666666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032018           93 IARLNEALAAKKKEISDFEA  112 (148)
Q Consensus        93 i~~l~~ql~~~~kel~~~~~  112 (148)
                      |..++..+....+.+.....
T Consensus       112 I~~~q~~l~~~~~~l~~rlr  131 (428)
T PRK11637        112 IAKLEQQQAAQERLLAAQLD  131 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            66666666666665554443

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=92.33  E-value=1.1  Score=31.13  Aligned_cols=95  Identities=15%  Similarity=0.192  Sum_probs=77.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018           15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA   94 (148)
Q Consensus        15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~   94 (148)
                      .+.+..+|+.+..++..+..++..++.-+.|...+-+.-.-.-.=..||=...--=+...+.+-+..++..++.++..++
T Consensus         7 ~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~~l~~~~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~   86 (106)
T PF01920_consen    7 FQELNQQLQQLEQQIQQLERQLRELELTLEELEKLDDDRKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLK   86 (106)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT-EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999998887666222222356776666666778889999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH
Q 032018           95 RLNEALAAKKKEISD  109 (148)
Q Consensus        95 ~l~~ql~~~~kel~~  109 (148)
                      .+.+++.+.++.+..
T Consensus        87 ~l~~~l~~~~~~l~~  101 (106)
T PF01920_consen   87 YLEKKLKELKKKLYE  101 (106)
T ss_dssp             HHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999988764

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=92.06  E-value=0.95  Score=32.69  Aligned_cols=94  Identities=13%  Similarity=0.130  Sum_probs=66.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE   90 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~   90 (148)
                      ..+.+..+++.+..+++.+-.++.+.+.-+.|.+.+-+.   ++.+-   ++|=..---=+..++.+=+..++.+++.++
T Consensus        11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~eL~~l~~d~~vyk~VG---~vlv~~~~~e~~~~l~~r~e~ie~~i~~le   87 (110)
T TIGR02338        11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEELERLPDDTPVYKSVG---NLLVKTDKEEAIQELKEKKETLELRVKTLQ   87 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhc---hhhheecHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345667788888888888888888888888887776332   33332   233111222244677778888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032018           91 EVIARLNEALAAKKKEISDF  110 (148)
Q Consensus        91 ~~i~~l~~ql~~~~kel~~~  110 (148)
                      +.++.+.+++.+++..|.++
T Consensus        88 k~~~~l~~~l~e~q~~l~~~  107 (110)
T TIGR02338        88 RQEERLREQLKELQEKIQEA  107 (110)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            88888888888888888765

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK14011 prefoldin subunit alpha; Provisional

Probab=91.86  E-value=1.2  Score=34.27  Aligned_cols=96  Identities=11%  Similarity=0.164  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCCcee----eeecceeeeecHhHH-------------
Q 032018           20 NMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP----LDPSRKCY----RMIGGVLVERTISEV-------------   78 (148)
Q Consensus        20 ~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~dr~~y----rlVG~VLVe~tv~Ea-------------   78 (148)
                      .+++++.-.++.+.++++.|..++.-.+.++.++..    |++...--    =+.+++.|+-++.+.             
T Consensus         3 ~elq~~~~~l~~~~~qie~L~~si~~L~~a~~e~~~~ie~L~~l~~~~eiLVPLg~s~yV~g~i~d~dkVlVdIGtGy~V   82 (144)
T PRK14011          3 EELQNQFMALEVYNQQVQKLQEELSSIDMMKMELLKSIESMEGLKTSEEILIPLGPGAFLKAKIVDPDKAILGVGSDIYL   82 (144)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCeEEEEcCCCcEEeEEecCCCeEEEEccCCeEE
Confidence            467888889999999999999999999998877643    44322211    255667777777663             


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      -.++++=+++++.+++.|++....+...++++...+.
T Consensus        83 Ek~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~  119 (144)
T PRK14011         83 EKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEIT  119 (144)
T ss_pred             EecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578899999999999999999999999999887766

>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters

Probab=91.82  E-value=0.44  Score=30.04  Aligned_cols=41  Identities=17%  Similarity=0.222  Sum_probs=23.4

Q ss_pred             cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032018           74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKY  114 (148)
Q Consensus        74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~  114 (148)
                      +..||+..|.+..++|+..|+.+..++..++++-..+-..|
T Consensus         2 d~~EAkelLqe~~d~IEqkiedid~qIaeLe~KR~~Lv~qH   42 (46)
T PF08946_consen    2 DRAEAKELLQEHYDNIEQKIEDIDEQIAELEAKRQRLVDQH   42 (46)
T ss_dssp             -------------THHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHHHHHHHHhC
Confidence            57899999999999999999999999999988877665544

It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.

>PRK03918 chromosome segregation protein; Provisional

Probab=90.91  E-value=5.6  Score=37.48  Aligned_cols=87  Identities=23%  Similarity=0.312  Sum_probs=58.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 032018           23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAA  102 (148)
Q Consensus        23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~  102 (148)
                      ..+...+..+...+..+...+.+.+..++.|....|.+++   -|.=|-+.-..+++......++.|+..+..++..+..
T Consensus       401 ~~l~~~i~~l~~~~~~~~~~i~eL~~~l~~L~~~~~~Cp~---c~~~L~~~~~~el~~~~~~ei~~l~~~~~~l~~~~~~  477 (880)
T PRK03918        401 EEIEEEISKITARIGELKKEIKELKKAIEELKKAKGKCPV---CGRELTEEHRKELLEEYTAELKRIEKELKEIEEKERK  477 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---CCCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455556666666667777777777788888765543332   4445555566677777788888888888888777777


Q ss_pred             HHHHHHHHHH
Q 032018          103 KKKEISDFEA  112 (148)
Q Consensus       103 ~~kel~~~~~  112 (148)
                      +.+++..+..
T Consensus       478 l~~~~~~~~~  487 (880)
T PRK03918        478 LRKELRELEK  487 (880)
T ss_pred             HHHHHHHHHH
Confidence            7766665433

>PRK02224 chromosome segregation protein; Provisional

Probab=90.86  E-value=3  Score=39.46  Aligned_cols=97  Identities=15%  Similarity=0.195  Sum_probs=64.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018           15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA   94 (148)
Q Consensus        15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~   94 (148)
                      ..+.-..+..++.++..+...+..++..+..+...++.++.+=.+..|+ +-|-=+-...+.+++..+...+..+...++
T Consensus       407 ~~~~e~~l~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Cp-~C~r~~~~~~~~~~~~~~~~~~~~~~~~~~  485 (880)
T PRK02224        407 LGNAEDFLEELREERDELREREAELEATLRTARERVEEAEALLEAGKCP-ECGQPVEGSPHVETIEEDRERVEELEAELE  485 (880)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC-CCCCcCCCcchhhhHHHHHHHHHHHHHHHH
Confidence            4455677788899999999999999999999999999987533456775 233333344444556566666666665666


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 032018           95 RLNEALAAKKKEISDFEA  112 (148)
Q Consensus        95 ~l~~ql~~~~kel~~~~~  112 (148)
                      .+..++..+..+++.+..
T Consensus       486 ~le~~l~~~~~~~e~l~~  503 (880)
T PRK02224        486 DLEEEVEEVEERLERAED  503 (880)
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            666555555555554433

>PF13118 DUF3972: Protein of unknown function (DUF3972)

Probab=90.46  E-value=1.1  Score=34.02  Aligned_cols=53  Identities=21%  Similarity=0.352  Sum_probs=45.6

Q ss_pred             eeecceeeeec--------------HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           64 RMIGGVLVERT--------------ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        64 rlVG~VLVe~t--------------v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      ..++|++|++|              ++|.+..|+..-.||...+-+++.-+++-.+.+.-++..+++
T Consensus        58 ~~~~~~fvEKTi~til~LheKvl~aKdETI~~lk~EN~fLKeAl~s~QE~y~ed~kTI~~L~~qL~~  124 (126)
T PF13118_consen   58 HALDPMFVEKTIGTILNLHEKVLDAKDETIEALKNENRFLKEALYSMQELYEEDRKTIELLREQLKI  124 (126)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            56889999999              577788888888999999999999999999999988887764

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=90.44  E-value=5  Score=28.75  Aligned_cols=94  Identities=15%  Similarity=0.293  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------h-------------cCCCC-----CCcee--eeecc
Q 032018           15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA------I-------------KPLDP-----SRKCY--RMIGG   68 (148)
Q Consensus        15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee------L-------------~~l~~-----dr~~y--rlVG~   68 (148)
                      .+.+..+++.|++++..+..++.+++.-+.+.+.+-+.      +             .+-+.     +..||  +-+..
T Consensus         8 ~~~l~~~i~~l~~~~~~l~~~~~e~~~~~~~l~~l~~~~~~~~~l~~~g~~~~~~~~i~~~~~v~v~iG~~~~ve~~~~e   87 (129)
T cd00890           8 LQQLQQQLEALQQQLQKLEAQLTEYEKAKETLETLKKAEEEKELLVPLGAGLFVKAEVKDDDKVLVDLGTGVYVEKSLEE   87 (129)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCeEEEecCCceEEEEEECCCCEEEEEecCCEEEEecHHH
Confidence            34566777777777777777777777777777666532      0             03222     45555  33332


Q ss_pred             eeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           69 VLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDF  110 (148)
Q Consensus        69 VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~  110 (148)
                        ....+++-+..|+++++.+++.++.+..++..+...++..
T Consensus        88 --A~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          88 --AIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence              2467888888888888899999999988888888887764

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PRK01156 chromosome segregation protein; Provisional

Probab=90.13  E-value=6.2  Score=37.61  Aligned_cols=93  Identities=14%  Similarity=0.188  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018           18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN   97 (148)
Q Consensus        18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~   97 (148)
                      +...+..|...+..+.+.+..+...+.+.+.+++.|+ .  ..+|=.-..+.= +.-..+.+......++.++..++.++
T Consensus       414 ~~~~~~~l~~~i~~l~~~i~~l~~~~~el~~~~~~l~-~--~~~Cp~c~~~~~-~e~~~e~i~~~~~~i~~l~~~i~~l~  489 (895)
T PRK01156        414 INVKLQDISSKVSSLNQRIRALRENLDELSRNMEMLN-G--QSVCPVCGTTLG-EEKSNHIINHYNEKKSRLEEKIREIE  489 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-c--CCCCCCCCCcCC-hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344445555555555555555555555555555555 2  245666555555 66677788888888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 032018           98 EALAAKKKEISDFEAKY  114 (148)
Q Consensus        98 ~ql~~~~kel~~~~~k~  114 (148)
                      ..+..+.+++..+....
T Consensus       490 ~~~~~l~~~~~~~~~~~  506 (895)
T PRK01156        490 IEVKDIDEKIVDLKKRK  506 (895)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            87777777666554433

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=88.82  E-value=3.2  Score=31.09  Aligned_cols=96  Identities=14%  Similarity=0.111  Sum_probs=73.1

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHH
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIE   90 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~   90 (148)
                      ..+++..+++.+--+.+++-.++.+++.-+.|++.+-+-   -+.+  +.-.|++=-+. +...+++=+..|+.|+..|+
T Consensus        14 q~QqLq~ql~~~~~qk~~le~qL~E~~~al~Ele~l~eD~~vYk~V--G~llvk~~k~~-~~~eL~er~E~Le~ri~tLe   90 (119)
T COG1382          14 QLQQLQQQLQKVILQKQQLEAQLKEIEKALEELEKLDEDAPVYKKV--GNLLVKVSKEE-AVDELEERKETLELRIKTLE   90 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHh--hhHHhhhhHHH-HHHHHHHHHHHHHHHHHHHH
Confidence            356788888888888899999999999999998876543   1111  24455553333 34578888999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Q 032018           91 EVIARLNEALAAKKKEISDFEA  112 (148)
Q Consensus        91 ~~i~~l~~ql~~~~kel~~~~~  112 (148)
                      +..+++.++++.++..|.+.-.
T Consensus        91 kQe~~l~e~l~eLq~~i~~~l~  112 (119)
T COG1382          91 KQEEKLQERLEELQSEIQKALG  112 (119)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999988876543

>PRK01203 prefoldin subunit alpha; Provisional

Probab=88.63  E-value=3.2  Score=31.52  Aligned_cols=94  Identities=14%  Similarity=0.253  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----CCCCC------ceeeeecceeeeecHhHHH-------------H
Q 032018           24 SMRSELNQIYSKITELEMEASEHSLVINAIKP----LDPSR------KCYRMIGGVLVERTISEVL-------------P   80 (148)
Q Consensus        24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----l~~dr------~~yrlVG~VLVe~tv~Ea~-------------~   80 (148)
                      .+-.+++-+.+++..|.+++.-.+.++.++..    +..-.      ...=+.|++.|+-++.+..             .
T Consensus         4 ~~~~~~~~~~~q~e~l~~ql~~L~~a~se~~~~ie~L~~~~~~~~~eiLVPLg~slYV~gki~d~~kVlVdIGTGy~VEK   83 (130)
T PRK01203          4 DVEAQLNYIESLISSVDSQIDSLNKTLSEVQQTISFLSDNELDNSKELLISIGSGIFADGNIKKDKDLIVPIGSGVYIAE   83 (130)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCeEEEEccCCceEeEEecCCCeEEEEcCCCeEEEe
Confidence            46789999999999999999999988887744    22211      0113556667776666544             4


Q ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018           81 AVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR  117 (148)
Q Consensus        81 ~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~  117 (148)
                      .+++++++|+..++.|++-+..+...+..+...++--
T Consensus        84 ~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l  120 (130)
T PRK01203         84 ERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTV  120 (130)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7789999999999999999999999999999988753

>PF04949 Transcrip_act: Transcriptional activator; InterPro: IPR007033 Golgins are a family of coiled-coil proteins associated with the Golgi apparatus necessary for tethering events in membrane fusion and as structural supports for Golgi cisternae []

Probab=88.02  E-value=11  Score=29.46  Aligned_cols=86  Identities=10%  Similarity=0.235  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHH
Q 032018           16 QIVANMYTSMRSELN--------QIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKE   87 (148)
Q Consensus        16 qe~~~~~q~Lq~q~q--------~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e   87 (148)
                      ...+..|+....+++        .+..+++.++..-.......++|+.+.+         |      .--.+..|.++++
T Consensus        30 ~sals~f~AkEeeIErkKmeVrekVq~~LgrveEetkrLa~ireeLE~l~d---------P------~RkEv~~vRkkID   94 (159)
T PF04949_consen   30 RSALSAFRAKEEEIERKKMEVREKVQAQLGRVEEETKRLAEIREELEVLAD---------P------MRKEVEMVRKKID   94 (159)
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc---------c------hHHHHHHHHHHHH
Confidence            345666666655543        5677777777777777777777775532         1      2334678899999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           88 GIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        88 ~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      .++..++.+-...+++++++..|.+.||-
T Consensus        95 ~vNreLkpl~~~cqKKEkEykealea~nE  123 (159)
T PF04949_consen   95 SVNRELKPLGQSCQKKEKEYKEALEAFNE  123 (159)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999888874

This entry represents proteins annotated as RAB6-interacting golgins.

>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells

Probab=86.74  E-value=7.8  Score=29.47  Aligned_cols=34  Identities=18%  Similarity=0.210  Sum_probs=16.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018           21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIK   54 (148)
Q Consensus        21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~   54 (148)
                      ++..|+...+.+-..+..++.++.+++..++.-.
T Consensus        36 EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~   69 (143)
T PF12718_consen   36 EITSLQKKNQQLEEELDKLEEQLKEAKEKLEESE   69 (143)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence            3444444444444444445555555554444443

In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].

>PF14712 Snapin_Pallidin: Snapin/Pallidin

Probab=85.25  E-value=9.8  Score=26.10  Aligned_cols=79  Identities=18%  Similarity=0.264  Sum_probs=55.4

Q ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018           12 PVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE   91 (148)
Q Consensus        12 ~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~   91 (148)
                      .|.+..+-..++.+++.+..|...+..+...+.++..+.+-...++                    ..| -..++..|.+
T Consensus        13 ~P~l~~~~~~l~el~~sQ~~L~~~i~~~~~~L~~~~~~~~~~~~~~--------------------~~~-y~~KL~~ikk   71 (92)
T PF14712_consen   13 EPDLDRLDQQLQELRQSQEELLQQIDRLNEKLKELNEVEQINEPFD--------------------LDP-YVKKLVNIKK   71 (92)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHH--------------------hhH-HHHHHHHHHH
Confidence            4777888888899999999999999888888888777644332221                    122 3566667777


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 032018           92 VIARLNEALAAKKKEISDFE  111 (148)
Q Consensus        92 ~i~~l~~ql~~~~kel~~~~  111 (148)
                      ++..+...+..+++++..++
T Consensus        72 rm~~l~~~l~~lk~R~~~L~   91 (92)
T PF14712_consen   72 RMSNLHERLQKLKKRADKLQ   91 (92)
T ss_pred             HHHHHHHHHHHHHHHHHhhc
Confidence            77777777777777766553

>PRK03918 chromosome segregation protein; Provisional

Probab=84.80  E-value=6.8  Score=36.93  Aligned_cols=20  Identities=20%  Similarity=0.421  Sum_probs=7.7

Q ss_pred             HHHHhHHHHHHHHHHHHHHH
Q 032018           81 AVQRNKEGIEEVIARLNEAL  100 (148)
Q Consensus        81 ~Le~r~e~L~~~i~~l~~ql  100 (148)
                      .+..++..++..+..+..++
T Consensus       311 ~l~~~~~~l~~~~~~l~~~l  330 (880)
T PRK03918        311 EIEKRLSRLEEEINGIEERI  330 (880)
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            33333333333333333333

>PF08657 DASH_Spc34: DASH complex subunit Spc34 ; InterPro: IPR013966 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []

Probab=84.58  E-value=9.1  Score=32.07  Aligned_cols=48  Identities=17%  Similarity=0.207  Sum_probs=42.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceee
Q 032018           17 IVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYR   64 (148)
Q Consensus        17 e~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yr   64 (148)
                      ....+|..|++.++.+...+..|++.+.|.+.=|+.++.-.++...++
T Consensus       177 ga~eki~~Lr~~y~~l~~~i~~lE~~VaeQ~~qL~~~n~~~~~~~~~~  224 (259)
T PF08657_consen  177 GAREKIAALRQRYNQLSNSIAYLEAEVAEQEAQLERMNRSSSDSSSDD  224 (259)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccc
Confidence            467889999999999999999999999999999999988776665553

In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=84.22  E-value=5.3  Score=26.64  Aligned_cols=42  Identities=14%  Similarity=0.358  Sum_probs=36.1

Q ss_pred             HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      .++-+..|+.++.|.+..|+.|+..+...+++|..++..++.
T Consensus         2 le~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~   43 (69)
T PF04102_consen    2 LEERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRL   43 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356678899999999999999999999999999988887765

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>PRK00736 hypothetical protein; Provisional

Probab=83.51  E-value=5.9  Score=26.53  Aligned_cols=43  Identities=21%  Similarity=0.255  Sum_probs=36.2

Q ss_pred             HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018           75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR  117 (148)
Q Consensus        75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~  117 (148)
                      ..+-+..|+.++-|.+..|+.|++.+..-+++|..++..+..-
T Consensus         3 ~e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L   45 (68)
T PRK00736          3 AEERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDAL   45 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456788999999999999999999999998888888776653

>KOG3047 consensus Predicted transcriptional regulator UXT [Transcription]

Probab=83.08  E-value=19  Score=27.73  Aligned_cols=100  Identities=8%  Similarity=0.094  Sum_probs=65.5

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC----------CCCC-CceeeeecceeeeecHhHHHHH
Q 032018           13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKP----------LDPS-RKCYRMIGGVLVERTISEVLPA   81 (148)
Q Consensus        13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~----------l~~d-r~~yrlVG~VLVe~tv~Ea~~~   81 (148)
                      |.+.-...+|..+|.|+.....=+...+--+++.-.-++-=..          +++. +.+..+.-++.++-+..||+..
T Consensus        30 ~di~k~~d~~dKl~eQ~aeY~kLk~t~eRL~eaahkel~~ktdLGcnfFmdi~VpDTk~i~VaL~~~fflElkLadAiKf  109 (157)
T KOG3047|consen   30 PDIAKEEDEFDKLQEQCAEYAKLKFTCERLLEAAHKELEGKTDLGCNFFMDIEVPDTKHIVVALCDDFFLELKLADAIKF  109 (157)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccccceeeEeeecCCcceEEEEeecceeeeehHHHHHHH
Confidence            3444455666667766666665555554444433222222111          1333 4444899999999999999999


Q ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           82 VQRNKEGIEEVIARLNEALAAKKKEISDFEA  112 (148)
Q Consensus        82 Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~  112 (148)
                      .+.+.+.|....++|.+.-..+...|-=+-.
T Consensus       110 ~DRK~dlLkel~ekLqKdsmkiKa~ihMLLa  140 (157)
T KOG3047|consen  110 CDRKMDLLKELMEKLQKDSMKIKADIHMLLA  140 (157)
T ss_pred             HHHhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            9999999999888888877777766654443

>PRK00295 hypothetical protein; Provisional

Probab=82.68  E-value=6.7  Score=26.26  Aligned_cols=42  Identities=14%  Similarity=0.304  Sum_probs=35.6

Q ss_pred             HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      .++-+..|+.++.|.+..|+.|++.+...+++|..++..+.-
T Consensus         3 ~e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~   44 (68)
T PRK00295          3 LEERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAA   44 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445578899999999999999999999999888888877664

>KOG3335 consensus Predicted coiled-coil protein [General function prediction only]

Probab=81.26  E-value=12  Score=30.01  Aligned_cols=59  Identities=20%  Similarity=0.181  Sum_probs=39.7

Q ss_pred             CCceeeeecceeeeec----HhHHHHHH--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 032018           59 SRKCYRMIGGVLVERT----ISEVLPAV--QRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIR  117 (148)
Q Consensus        59 dr~~yrlVG~VLVe~t----v~Ea~~~L--e~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~  117 (148)
                      .-.+|-+.|||||=-.    ..|....-  ...+..|+..+..|+.++..+++.++++-++++-.
T Consensus        75 E~~iF~vggg~lv~Ey~R~~~~e~~kee~~~~e~~elr~~~~~l~~~i~~~~~~~~~L~~~l~~~  139 (181)
T KOG3335|consen   75 ELFIFSVGGGVLVFEYWRQARKERKKEEKRKQEIMELRLKVEKLENAIAELTKFFSQLHSKLNKP  139 (181)
T ss_pred             hHHheeecceeeeehhHHhhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            4789999999998322    22322221  22345566677778888888888888887777765

>PRK04325 hypothetical protein; Provisional

Probab=81.10  E-value=7.7  Score=26.39  Aligned_cols=42  Identities=14%  Similarity=0.307  Sum_probs=36.1

Q ss_pred             HhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           75 ISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        75 v~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      ..+-+..|+.++.|.+..|+.|++.+...+++|..++..+..
T Consensus         7 ~e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~   48 (74)
T PRK04325          7 MEDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRL   48 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455688899999999999999999999999999988877654

>PF09006 Surfac_D-trimer: Lung surfactant protein D coiled-coil trimerisation; InterPro: IPR015097 This domain is found in the SFTPD family, which includes lung surfactant protein D (SFTPD), conglutinin, collectin-43 and collectin-46

Probab=80.58  E-value=7.6  Score=24.50  Aligned_cols=45  Identities=11%  Similarity=0.176  Sum_probs=34.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeec
Q 032018           23 TSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIG   67 (148)
Q Consensus        23 q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG   67 (148)
                      ..|+++...|..++..|+...+-++.|.=--+.-.=..++|+..|
T Consensus         2 ~aLrqQv~aL~~qv~~Lq~~fs~yKKa~lFp~G~~VG~Kifkt~g   46 (46)
T PF09006_consen    2 NALRQQVEALQGQVQRLQAAFSQYKKAELFPNGRSVGEKIFKTAG   46 (46)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEEETTEEEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchhhhhhhhccCC
Confidence            468899999999999999999999999544444333567777654

It forms a triple-helical parallel coiled coil, and mediates trimerisation of the protein []. ; PDB: 4DN8_A 3G84_A 2RIE_C 3IKR_B 1B08_A 2GGX_B 2OS9_C 2ORK_B 1PWB_A 2RIA_C ....

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	148
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	4e-11
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	3e-06

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A Length = 117

 Score = 55.7 bits (134), Expect = 4e-11
 Identities = 17/108 (15%), Positives = 49/108 (45%)

Query: 16  QIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTI 75
           Q +     S + +L  +  +  ++++E +E    ++ I+ L      Y+ +G ++V+ T 
Sbjct: 9   QAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTK 68

Query: 76  SEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRKPES 123
            + +  ++   E +E  +  L        +++ +  A+ +  +R P +
Sbjct: 69  DKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRPPTA 116

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B Length = 107

 Score = 42.6 bits (100), Expect = 3e-06
 Identities = 13/100 (13%), Positives = 36/100 (36%)

Query: 14  NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVER 73
           N Q     +  ++ +   I  +   +EM+ +E    +  +       + Y+  G +L+  
Sbjct: 2   NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRV 61

Query: 74  TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAK 113
              E+   +Q   E ++     +        K++ + +  
Sbjct: 62  AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVN 101

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	148
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.92
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.92
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	99.42
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	99.31
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	98.12
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	96.72
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	93.59
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	92.0
2pnv_A	43	Small conductance calcium-activated potassium chan	90.07
3na7_A	256	HP0958; flagellar biogenesis, flagellum export, C4	84.25
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	82.47
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	80.59
2dq0_A	455	Seryl-tRNA synthetase; coiled-coil, homodimer, str	80.41
3ol1_A	119	Vimentin; structural genomics, PSI-2, protein stru	80.21
2yny_A	106	General control protein GCN4, putative inner MEMB	80.13
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	80.01

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.92  E-value=1.6e-24  Score=154.57  Aligned_cols=106  Identities=12%  Similarity=0.208  Sum_probs=102.6

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018           13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV   92 (148)
Q Consensus        13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~   92 (148)
                      |.+|+++.+|++++++++.+.+++..++.+++||+.|+++|+.+++|++|||+||||||++++++|+++|++++++|+..
T Consensus         1 ~~~Q~~i~~f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~   80 (107)
T 1fxk_A            1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR   80 (107)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHHhHHHHhccHHHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018           93 IARLNEALAAKKKEISDFEAKYKIRI  118 (148)
Q Consensus        93 i~~l~~ql~~~~kel~~~~~k~~i~i  118 (148)
                      |++|++++..+++++.+|+.++.-.+
T Consensus        81 i~~le~~~~~~~~~l~~lk~~l~~~~  106 (107)
T 1fxk_A           81 EKTIERQEERVMKKLQEMQVNIQEAM  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999886544

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.92  E-value=6.8e-24  Score=153.26  Aligned_cols=111  Identities=15%  Similarity=0.296  Sum_probs=107.5

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHH
Q 032018           10 REPVNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGI   89 (148)
Q Consensus        10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L   89 (148)
                      .-|+..|+++.+|+.++++++.+.+++..++.+++||+.|+++|+.+++|++||++||||||++++++|++.|++++++|
T Consensus         3 ~~~~e~Q~~i~~~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~i   82 (117)
T 2zqm_A            3 NIPPQVQAMLGQLESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETL   82 (117)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHH
Confidence            45889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032018           90 EEVIARLNEALAAKKKEISDFEAKYKIRIRK  120 (148)
Q Consensus        90 ~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~  120 (148)
                      +..|++|++++..+.+++.+|+.++.-.+.+
T Consensus        83 e~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           83 EVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999999999999999977754

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=99.42  E-value=3e-12  Score=96.65  Aligned_cols=110  Identities=19%  Similarity=0.279  Sum_probs=102.6

Q ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhhcCCC-CCCceeeeec------------------
Q 032018           10 REPVNEQIVANMYTSMRSELNQIYSKITEL---EMEASEHSLVINAIKPLD-PSRKCYRMIG------------------   67 (148)
Q Consensus        10 ~~~~~~qe~~~~~q~Lq~q~q~l~~q~~~L---e~ql~E~~~VleeL~~l~-~dr~~yrlVG------------------   67 (148)
                      ..|+.++++...+++|+.+++.+.++++.|   ...+.|+..++++|+.++ ++..+|..+|                  
T Consensus         6 ~~~~~l~ql~~~~qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~~l~~~~~~ilvplg~~~yv~g~i~~~~~V~v~   85 (151)
T 2zdi_C            6 QNNKELEKLAYEYQVLQAQAQILAQNLELLNLAKAEVQTVRETLENLKKIEEEKPEILVPIGAGSFLKGVIVDKNNAIVS   85 (151)
T ss_dssp             SSTTHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSCEEEEECSSSCEEEEECSCTTEEEEE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceEEEEcCCCeEEEEEECCCCEEEEE
Confidence            678999999999999999999999999999   999999999999999999 8888887744                  


Q ss_pred             ---ceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 032018           68 ---GVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR  119 (148)
Q Consensus        68 ---~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~  119 (148)
                         ||+|+.|.+||+..|++|+++|+..++.+++++..+...+..+...++-...
T Consensus        86 lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~~l~~  140 (151)
T 2zdi_C           86 VGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQEVQQ  140 (151)
T ss_dssp             EETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred             eCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               8999999999999999999999999999999999999999999888775544

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=99.31  E-value=5.6e-11  Score=87.50  Aligned_cols=103  Identities=12%  Similarity=0.266  Sum_probs=93.6

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC--CC--------------------Cceeeeec-cee
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLD--PS--------------------RKCYRMIG-GVL   70 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~--~d--------------------r~~yrlVG-~VL   70 (148)
                      .++++...+++|+.+++.+.+++..|...+.|+...+++|+.++  .+                    .+||-.|| |++
T Consensus         2 ~~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~   81 (133)
T 1fxk_C            2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEE
Confidence            46889999999999999999999999999999999999999887  33                    23666788 899


Q ss_pred             eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 032018           71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKI  116 (148)
Q Consensus        71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i  116 (148)
                      |+.|.+||+..|++|++.++..++.+++++..+...+..+...++-
T Consensus        82 vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~~  127 (133)
T 1fxk_C           82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAEE  127 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999998887653

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=98.12  E-value=0.00011  Score=50.77  Aligned_cols=88  Identities=25%  Similarity=0.352  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 032018           24 SMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAK  103 (148)
Q Consensus        24 ~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~  103 (148)
                      .|+-++++|..-++-++.-..|.+-+---+..+..+|++||-....||+-|++|++..++.-.=-....|++|.+..+.+
T Consensus         8 el~lel~qir~lr~~~elkmkeleyaegiit~~k~er~~yraf~dllveitkdeaiehier~rl~ykreie~l~~~ekei   87 (99)
T 3aei_A            8 ELQLELQQIRTLRQSLELKMKELEYAEGIITSLKSERRIYRAFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEI   87 (99)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCSCCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35667777777788888888888888888999999999999999999999999999999887777788899999988888


Q ss_pred             HHHHHHHH
Q 032018          104 KKEISDFE  111 (148)
Q Consensus       104 ~kel~~~~  111 (148)
                      .+++..+.
T Consensus        88 me~ls~l~   95 (99)
T 3aei_A           88 MEELSKLR   95 (99)
T ss_dssp             HHHHHHC-
T ss_pred             HHHHHhhc
Confidence            88877664

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=96.72  E-value=0.056  Score=37.73  Aligned_cols=99  Identities=19%  Similarity=0.282  Sum_probs=77.4

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI   93 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i   93 (148)
                      .+..+-.++..++.++..|...+..+.+++.+...++..|+..  +..|- +-|..+=.....+++.....++..+...+
T Consensus         4 ~~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l~~l~~~--g~~CP-vCgs~l~~~~~~~~i~~~~~~l~~l~~~i   80 (112)
T 1l8d_A            4 LLEELETKKTTIEEERNEITQRIGELKNKIGDLKTAIEELKKA--KGKCP-VCGRELTDEHREELLSKYHLDLNNSKNTL   80 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SEECT-TTCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CCCCC-CCCCcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456667888999999999999999999999999999999873  22333 11222223344577888889999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Q 032018           94 ARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        94 ~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      ..+..++..+..++..+...+.
T Consensus        81 ~~l~~~i~~l~~~~~~l~~~~~  102 (112)
T 1l8d_A           81 AKLIDRKSELERELRRIDMEIK  102 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999888877

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=93.59  E-value=0.42  Score=33.10  Aligned_cols=97  Identities=10%  Similarity=0.032  Sum_probs=63.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHH
Q 032018           15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIA   94 (148)
Q Consensus        15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~   94 (148)
                      .+.+..+++.+..+++.+..++..++.-+.|...+-+.=+-.-+=-.||=..---=+..++++-+..++..++.|+..++
T Consensus        15 ~~~l~~~~~~l~~q~~~l~~~~~e~~~~~~eL~~l~~d~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~   94 (117)
T 2zqm_A           15 LESYQQQLQLVVQQKQKVQLELTEAKKALDEIESLPDDAVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEK   94 (117)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566777777788888888888887777777766542111111234553333334456677777777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032018           95 RLNEALAAKKKEISDFE  111 (148)
Q Consensus        95 ~l~~ql~~~~kel~~~~  111 (148)
                      .+.+.+.+++..+.+..
T Consensus        95 ~l~~~l~~lk~~l~~~~  111 (117)
T 2zqm_A           95 KLNEKLKELTAQIQSAL  111 (117)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            77777777777776543

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=92.00  E-value=0.93  Score=30.88  Aligned_cols=92  Identities=15%  Similarity=0.126  Sum_probs=66.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHH
Q 032018           15 EQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINA---IKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEE   91 (148)
Q Consensus        15 ~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~Vlee---L~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~   91 (148)
                      .+.+..+++.+..+++.+..++..++.-+.|...+-+.   ...+   -.||=..---=+..++++-+..++.+++.|+.
T Consensus        10 f~~lq~~~~~l~~q~~~l~~~~~e~~~~~~EL~~l~~d~~vy~~i---G~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~   86 (107)
T 1fxk_A           10 FQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSS---GNILIRVAKDELTEELQEKLETLQLREKTIER   86 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEE---TTEEEEECHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCchHHHHH---hHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567788888888888888888888888888877542   2222   34553333333556778888888888888888


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 032018           92 VIARLNEALAAKKKEISD  109 (148)
Q Consensus        92 ~i~~l~~ql~~~~kel~~  109 (148)
                      .++.+.+.+.+++..+.+
T Consensus        87 ~~~~~~~~l~~lk~~l~~  104 (107)
T 1fxk_A           87 QEERVMKKLQEMQVNIQE  104 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHH
Confidence            888888888888877653

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=90.07  E-value=0.48  Score=28.59  Aligned_cols=36  Identities=17%  Similarity=0.273  Sum_probs=31.4

Q ss_pred             cHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           74 TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISD  109 (148)
Q Consensus        74 tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~  109 (148)
                      .+-|.+..|..|-+.++++|..|+..+..+...++.
T Consensus         6 ~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a   41 (43)
T 2pnv_A            6 IMYDMISDLNERSEDFEKRIVTLETKLETLIGSIHA   41 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            356889999999999999999999999999887764

>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}

Probab=84.25  E-value=13  Score=29.25  Aligned_cols=34  Identities=12%  Similarity=0.006  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 032018           21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIK   54 (148)
Q Consensus        21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~   54 (148)
                      +|+.|+.++..+...+..++.++.|...-+++++
T Consensus        91 E~~aL~kEie~~~~~i~~lE~eile~~e~ie~~~  124 (256)
T 3na7_A           91 ELRSLNIEEDIAKERSNQANREIENLQNEIKRKS  124 (256)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4666666666666666666666666666555543

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=82.47  E-value=1.1  Score=31.97  Aligned_cols=94  Identities=11%  Similarity=0.185  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCC----Cc--eee----eecceeeeecHhH-------------H
Q 032018           22 YTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPS----RK--CYR----MIGGVLVERTISE-------------V   78 (148)
Q Consensus        22 ~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~d----r~--~yr----lVG~VLVe~tv~E-------------a   78 (148)
                      .++|+..++.+...+..|..++...+..+.++...-..    ..  =+.    +.+++.|+-.+.+             +
T Consensus         3 ~~~l~~~~q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~l~~~~~~~~lvplg~~~yv~a~i~~~~~V~v~lG~g~~v   82 (133)
T 1fxk_C            3 LAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVAI   82 (133)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCeEEEEcCCCcEEEEEECCCCEEEEEcCCCEEE
Confidence            56666667777777777777777666666665554321    11  011    2222222232222             1


Q ss_pred             HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           79 LPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        79 ~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      .-.+++=+++++.+++.++.+++.+.+.+..++..+.
T Consensus        83 E~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~  119 (133)
T 1fxk_C           83 KKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM  119 (133)
T ss_dssp             EEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             EeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            2345666677777777777777777777776666554

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=80.59  E-value=4.9  Score=26.74  Aligned_cols=49  Identities=14%  Similarity=0.142  Sum_probs=41.6

Q ss_pred             eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 032018           72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIRK  120 (148)
Q Consensus        72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~i~i~~  120 (148)
                      ..+.++=+..|+.++.|.+..|+.|+..+...+++|..++..+..-..+
T Consensus         9 ~~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~r   57 (78)
T 3efg_A            9 DQELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLED   57 (78)
T ss_dssp             CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677889999999999999999999999999999999888764433

>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A

Probab=80.41  E-value=24  Score=30.33  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=52.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHH
Q 032018           18 VANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLN   97 (148)
Q Consensus        18 ~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~   97 (148)
                      ++.++-.|-.+...+..++..|..+.++...-+..++.-..+                   ...|..+...|...|+.++
T Consensus        29 ~~~~~~~l~~~~r~~~~~~~~l~~~~n~~sk~i~~~~~~~~~-------------------~~~l~~~~~~~~~~~~~~~   89 (455)
T 2dq0_A           29 WVDEILKLDTEWRTKLKEINRLRHERNKIAVEIGKRRKKGEP-------------------VDELLAKSREIVKRIGELE   89 (455)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCC-------------------THHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc-------------------HHHHHHHHHHHHHHHHHHH
Confidence            456677777777777777777777777777776665442211                   2456666777778888888


Q ss_pred             HHHHHHHHHHHHHHHH
Q 032018           98 EALAAKKKEISDFEAK  113 (148)
Q Consensus        98 ~ql~~~~kel~~~~~k  113 (148)
                      .++..+++++..+-..
T Consensus        90 ~~~~~~~~~~~~~~~~  105 (455)
T 2dq0_A           90 NEVEELKKKIDYYLWR  105 (455)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            8888888877766543

>2yny_A General control protein GCN4, putative inner MEMB protein; FGG domain, trimeric autotransporter adhesin, TAA, membrane chimera; 1.35A {Saccharomyces cerevisiae} PDB: 1w5i_A

Probab=80.13  E-value=13  Score=26.27  Aligned_cols=51  Identities=18%  Similarity=0.292  Sum_probs=45.2

Q ss_pred             CceeeeecceeeeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           60 RKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA  112 (148)
Q Consensus        60 r~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~  112 (148)
                      +.-|.+-|.  .-.+|.+|+..|..++..+...|..+..++..++-+|..+++
T Consensus        54 aPtY~I~g~--~YnnVGdAl~ald~svt~i~~~I~~lt~~i~~~~~~i~~~~~  104 (106)
T 2yny_A           54 APLYEVGTG--IYNNVGSALSALNTSMKQIEDKIEEILSKIYHIENEIARIKK  104 (106)
T ss_dssp             CCCEEETTE--EESSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCeEEeCCc--eeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            777887765  357899999999999999999999999999999999988764

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=80.01  E-value=21  Score=34.05  Aligned_cols=41  Identities=12%  Similarity=0.056  Sum_probs=26.7

Q ss_pred             eecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032018           72 ERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEA  112 (148)
Q Consensus        72 e~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~  112 (148)
                      +.........|++.+..|+++...|+.|+.+++..+.+..+
T Consensus      1011 ee~~~~~~~~L~~kv~~L~~e~~~L~qq~~~l~~~~~~~~~ 1051 (1080)
T 2dfs_A         1011 EEWADKYKHETEQLVSELKEQNTLLKTEKEELNRRIHDQAK 1051 (1080)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44445555677777777777777777777777755554443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	148
d1fxka_	107	a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Meth	9e-21

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 107

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 79.1 bits (195), Expect = 9e-21
 Identities = 13/106 (12%), Positives = 39/106 (36%)

Query: 14  NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVER 73
           N Q     +  ++ +   I  +   +EM+ +E    +  +       + Y+  G +L+  
Sbjct: 2   NVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRV 61

Query: 74  TISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYKIRIR 119
              E+   +Q   E ++     +        K++ + +   +  ++
Sbjct: 62  AKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK 107

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	148
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	99.95
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	99.16
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	95.39
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	92.85

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.95  E-value=1.3e-27  Score=170.78  Aligned_cols=106  Identities=12%  Similarity=0.208  Sum_probs=102.7

Q ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHH
Q 032018           13 VNEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEV   92 (148)
Q Consensus        13 ~~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~   92 (148)
                      .++++.+++|+.+|++++.+.+++++|+++++||++|+++|+.+|||++|||+||||||++++++++|+|.+++++|+..
T Consensus         1 ~~lqe~~~~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~   80 (107)
T d1fxka_           1 QNVQHQLAQFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLR   80 (107)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcccc
Q 032018           93 IARLNEALAAKKKEISDFEAKYKIRI  118 (148)
Q Consensus        93 i~~l~~ql~~~~kel~~~~~k~~i~i  118 (148)
                      |++|++++..+++++.+|+++++..+
T Consensus        81 i~~l~~q~~~l~~~l~~~~~~l~~~~  106 (107)
T d1fxka_          81 EKTIERQEERVMKKLQEMQVNIQEAM  106 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999999999998654

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.16  E-value=3.9e-10  Score=81.00  Aligned_cols=102  Identities=12%  Similarity=0.241  Sum_probs=93.0

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-----------------------CCceeeeeccee
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDP-----------------------SRKCYRMIGGVL   70 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~-----------------------dr~~yrlVG~VL   70 (148)
                      +++++..+++.|+++++.+.+++..|...+.|+..++++|+.++.                       +..|+-++.|+.
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~   81 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence            578999999999999999999999999999999999999887743                       345558899999


Q ss_pred             eeecHhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           71 VERTISEVLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        71 Ve~tv~Ea~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      |++|.++|+..++.|++.|+..++.+..++..+...+..+...++
T Consensus        82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~~  126 (133)
T d1fxkc_          82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE  126 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999998887765

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=95.39  E-value=0.013  Score=40.39  Aligned_cols=95  Identities=11%  Similarity=0.168  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCcee----------eeecceeeeecHhH-------------
Q 032018           21 MYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCY----------RMIGGVLVERTISE-------------   77 (148)
Q Consensus        21 ~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~y----------rlVG~VLVe~tv~E-------------   77 (148)
                      .+++|..+++.+.+.+..|..++......+.++..+-..=.-+          -+.+++.|+-.+.+             
T Consensus         2 ~L~eL~~~~~~l~~~l~~l~~~i~~l~~~~~e~~~~~~~L~~l~~~~~~e~lvplg~~~~v~~~i~~~~~vlV~lG~g~~   81 (133)
T d1fxkc_           2 ALAEIVAQLNIYQSQVELIQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIKAELKDTSEVIMSVGAGVA   81 (133)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTCEEEEEEETTEEEEEECCSTTEEEEEEETTEE
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCeEEEEcCCceEEEEEecCCCceEEEecCCee
Confidence            4688999999999999999999999999999988765321111          24455666666655             


Q ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 032018           78 VLPAVQRNKEGIEEVIARLNEALAAKKKEISDFEAKYK  115 (148)
Q Consensus        78 a~~~Le~r~e~L~~~i~~l~~ql~~~~kel~~~~~k~~  115 (148)
                      +...+++-+++++.+++.++++++.+.+++..++..+.
T Consensus        82 vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~  119 (133)
T d1fxkc_          82 IKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMM  119 (133)
T ss_dssp             EEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             eeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999999999999999988775

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=92.85  E-value=0.28  Score=32.47  Aligned_cols=97  Identities=14%  Similarity=0.117  Sum_probs=72.5

Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCceeeeecceeeeecHhHHHHHHHHhHHHHHHHH
Q 032018           14 NEQIVANMYTSMRSELNQIYSKITELEMEASEHSLVINAIKPLDPSRKCYRMIGGVLVERTISEVLPAVQRNKEGIEEVI   93 (148)
Q Consensus        14 ~~qe~~~~~q~Lq~q~q~l~~q~~~Le~ql~E~~~VleeL~~l~~dr~~yrlVG~VLVe~tv~Ea~~~Le~r~e~L~~~i   93 (148)
                      ..+.+..+++.+..+.+.+..++.+.+.-+.|.+.+-+.-.--..-..||=-.---=+..++.+=+..++.+++.+++.+
T Consensus         9 ~~q~lq~el~~~~~q~~~le~q~~E~~~vl~eL~~l~~d~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~   88 (107)
T d1fxka_           9 QFQQLQQQAQAISVQKQTVEMQINETQKALEELSRAADDAEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQE   88 (107)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999877654311111112232111122345677888899999999999999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032018           94 ARLNEALAAKKKEISDF  110 (148)
Q Consensus        94 ~~l~~ql~~~~kel~~~  110 (148)
                      +.+.+.+..+++++.+.
T Consensus        89 ~~l~~~l~~~~~~l~~~  105 (107)
T d1fxka_          89 ERVMKKLQEMQVNIQEA  105 (107)
T ss_dssp             HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999999999988753