Citrus Sinensis ID: 032088

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Secondary Structure (PSIPRED)
cEEEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHccccccccccEEEEEEccEEEEEEEcccEEEEEEEcccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccEEEEccHHHHHHHHcccccccc
Secondary Structure Prediction (SSPRO)
ccHEEEEEcccccEEEEEcccccHHHHHHHHHHHHHHHHHHccccccccEEEEEcccEEEEEEEcEEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcccHHcccHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
MILAVLFANsegnilverfngvpaeerLHWRSFLVKLGadnlkgvkneELLVASHKSVYIVYTVLGDVsifvvgkdeydELALAEVIFAITSAVKDacgkipterlfldkyGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Flexible Loop (DISEMBL)
MILAVLFAnsegnilvERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWkgllentekdrirrlvrlkppnef
Low Complexity Region (SEG)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Disordered region (IsUnstruct)
*ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRI************
Disordered Region (DISOPRED)
MILAVLFANSEGNILVERFNGVPAEERLHWRSF****************LLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIR****LK*****
Disordered Region (DISEMBL)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Disordered Region (DISPRO)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNEF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	147	2.2.26 [Sep-21-2011]
Q5NA06	177	Coatomer subunit zeta-3 O	no	no	0.537	0.446	0.341	0.0004
Q9MAX5	177	Coatomer subunit zeta-1 O	no	no	0.693	0.576	0.305	0.0005

>sp|Q5NA06|COPZ3_ORYSJ Coatomer subunit zeta-3 OS=Oryza sativa subsp. japonica GN=Os01g0838800 PE=2 SV=1

 Score = 43.9 bits (102), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 40/79 (50%)

Query: 57  SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICL 116
           S ++VY  + D+  FV G DE +EL LA V+   + A+          R  L+    I L
Sbjct: 62  SYFVVYKFIQDLHFFVTGGDEENELILASVLQGFSEAIDYLLRNKVHRRAALENLDLIFL 121

Query: 117 CLDEIVWKGLLENTEKDRI 135
           CLDE+V  G++  T+   I
Sbjct: 122 CLDEVVDGGIVLETDAKAI 140

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9MAX5|COPZ1_ORYSJ Coatomer subunit zeta-1 OS=Oryza sativa subsp. japonica GN=COPZ1 PE=2 SV=1

 Score = 43.5 bits (101), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/108 (30%), Positives = 49/108 (45%), Gaps = 6/108 (5%)

Query: 30  WRSFLVKLGADNLKGVKNEELLVASHKSVY------IVYTVLGDVSIFVVGKDEYDELAL 83
           W +   KL  +    VK ++    +   +       +VY  + D+  FV G +E +EL L
Sbjct: 29  WPTLSAKLAFEKSVFVKTQKATAGAEAEIVMFDGHIVVYKFIQDLHFFVTGGEEENELIL 88

Query: 84  AEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTE 131
           A V+   T AV         +R  L+    I LCLDEIV  G++  TE
Sbjct: 89  ASVLQGFTDAVDIILRNNVDKRTALENLDLILLCLDEIVDGGIVLETE 136

The zeta subunit may be involved in regulating the coat assembly and, hence, the rate of biosynthetic protein transport due to its association-dissociation properties with the coatomer complex.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
255553161	147	conserved hypothetical protein [Ricinus	1.0	1.0	0.931	1e-73
224054422	147	predicted protein [Populus trichocarpa]	1.0	1.0	0.904	3e-72
351726776	147	uncharacterized protein LOC100306313 [Gl	1.0	1.0	0.884	1e-71
357114648	875	PREDICTED: pentatricopeptide repeat-cont	0.993	0.166	0.856	1e-71
225442985	147	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.904	2e-71
351723349	147	uncharacterized protein LOC100305755 [Gl	1.0	1.0	0.891	2e-71
449437134	147	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.884	4e-71
356555439	147	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.897	9e-71
388494714	147	unknown [Lotus japonicus]	1.0	1.0	0.891	1e-70
41393251	884	putative chloroplastic RNA-binding prote	0.993	0.165	0.876	1e-70

>gi|255553161|ref|XP_002517623.1| conserved hypothetical protein [Ricinus communis] gi|223543255|gb|EEF44787.1| conserved hypothetical protein [Ricinus communis]

 Score =  280 bits (716), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 137/147 (93%), Positives = 143/147 (97%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI
Sbjct: 1   MILAVLFANVEGNILIERFSGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVWKGLLENT++DRIRRL+RLKPP +F
Sbjct: 121 IVWKGLLENTDRDRIRRLMRLKPPTDF 147

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054422|ref|XP_002298252.1| predicted protein [Populus trichocarpa] gi|118481741|gb|ABK92810.1| unknown [Populus trichocarpa] gi|222845510|gb|EEE83057.1| predicted protein [Populus trichocarpa]

 Score =  276 bits (705), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 141/147 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGV+NEELLVASHKSVYI
Sbjct: 1   MILAVLFANVEGNILIERFSGVPAEERLHWRSFLVKLGADNLKGVRNEELLVASHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSIF+VGKDEYDELAL EVIFAITSA+KD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIFIVGKDEYDELALTEVIFAITSALKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVWKGLLENT+K+R+RRL RLKPP EF
Sbjct: 121 IVWKGLLENTDKERVRRLTRLKPPTEF 147

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726776|ref|NP_001236882.1| uncharacterized protein LOC100306313 [Glycine max] gi|255628175|gb|ACU14432.1| unknown [Glycine max]

 Score =  274 bits (700), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 142/147 (96%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+LAVLFAN+EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MVLAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK+P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKLPSERLFLDKYGRICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVW+G LENTEKDRI+RL+RLKPP EF
Sbjct: 121 IVWQGYLENTEKDRIKRLIRLKPPTEF 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114648|ref|XP_003559110.1| PREDICTED: pentatricopeptide repeat-containing protein At5g46580, chloroplastic-like [Brachypodium distachyon]

 Score =  274 bits (700), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 125/146 (85%), Positives = 140/146 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFANS+GNIL+ERF+GVPAEERLHWRSFLVKLG++NLKG KNEELLVASHKSV I
Sbjct: 729 MILAVLFANSDGNILIERFHGVPAEERLHWRSFLVKLGSENLKGAKNEELLVASHKSVSI 788

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYT++GDV +++VGKDEYDELAL+EVIFA+TSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 789 VYTMIGDVCLYIVGKDEYDELALSEVIFAVTSAVKDVCGKPPTERLFLDKYGRICLCLDE 848

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNE 146
           IVWKGLLENTEKDR+RRL+RLKPP E
Sbjct: 849 IVWKGLLENTEKDRVRRLIRLKPPVE 874

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225442985|ref|XP_002268544.1| PREDICTED: uncharacterized protein LOC100245686 [Vitis vinifera] gi|297743445|emb|CBI36312.3| unnamed protein product [Vitis vinifera]

 Score =  273 bits (698), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 133/147 (90%), Positives = 139/147 (94%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+LAVLFANSEGNILVERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MLLAVLFANSEGNILVERFSGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELALAEVIF I S+VKD CGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALAEVIFVIISSVKDVCGKPPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVWKG+LEN +KDRIRRL RLKPP EF
Sbjct: 121 IVWKGMLENADKDRIRRLTRLKPPTEF 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723349|ref|NP_001236252.1| uncharacterized protein LOC100305755 [Glycine max] gi|255626529|gb|ACU13609.1| unknown [Glycine max]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 131/147 (89%), Positives = 141/147 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN+EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVW+G LENTEKDRI+RL+RLKPP EF
Sbjct: 121 IVWQGYLENTEKDRIKRLIRLKPPTEF 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437134|ref|XP_004136347.1| PREDICTED: uncharacterized protein LOC101206672 [Cucumis sativus]

 Score =  272 bits (695), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 130/147 (88%), Positives = 139/147 (94%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+LAVL ANS GNILVERF+GVPAEERLHWRSFLVKLGADNLKG KNEEL VASHKSVYI
Sbjct: 1   MLLAVLIANSVGNILVERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELFVASHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYT LGDV+++VVGKDEYDELALAEVIF ITSA+KDACGK PTERLFLDKYGKICLCLDE
Sbjct: 61  VYTALGDVAVYVVGKDEYDELALAEVIFVITSAIKDACGKAPTERLFLDKYGKICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVW G+LENTEKDRI+RL+RLKPPNEF
Sbjct: 121 IVWTGILENTEKDRIKRLIRLKPPNEF 147

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356555439|ref|XP_003546039.1| PREDICTED: uncharacterized protein LOC100781055 [Glycine max]

 Score =  271 bits (692), Expect = 9e-71,   Method: Compositional matrix adjust.
 Identities = 132/147 (89%), Positives = 140/147 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MILAVLFANVEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGK+EYDELAL+EVIF ITSAVKD CGK P+ERLFLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKEEYDELALSEVIFVITSAVKDVCGKPPSERLFLDKYGRICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVWKG LENTEKDRI+RLVRLKPP EF
Sbjct: 121 IVWKGYLENTEKDRIKRLVRLKPPTEF 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388494714|gb|AFK35423.1| unknown [Lotus japonicus]

 Score =  270 bits (691), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 131/147 (89%), Positives = 140/147 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLFAN+EGNIL+ERF+GVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct: 1   MILAVLFANAEGNILIERFHGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYTVLGDVSI+VVGKDEYDELAL+EVIF ITSAVKD CGK PTER+FLDKYG+ICLCLDE
Sbjct: 61  VYTVLGDVSIYVVGKDEYDELALSEVIFVITSAVKDICGKPPTERVFLDKYGRICLCLDE 120

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNEF 147
           IVWKG LENTE DRI+RL+RLKPP EF
Sbjct: 121 IVWKGYLENTENDRIKRLLRLKPPTEF 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|41393251|gb|AAS01974.1| putative chloroplastic RNA-binding protein, with alternative splicing isoforms [Oryza sativa Japonica Group] gi|108712189|gb|ABF99984.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica Group]

 Score =  270 bits (690), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 128/146 (87%), Positives = 140/146 (95%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           MILAVLF+NS+GNIL+ERF+GVPAEERLHWRSFLVKLGADNLKG KNEELLVASHKSV I
Sbjct: 738 MILAVLFSNSDGNILIERFHGVPAEERLHWRSFLVKLGADNLKGAKNEELLVASHKSVSI 797

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VYT++GDV +++VGKDEYDELALAEVIFAITSAVKD CGK PTERLFLDKYG+ICLCLDE
Sbjct: 798 VYTMIGDVCLYIVGKDEYDELALAEVIFAITSAVKDVCGKPPTERLFLDKYGRICLCLDE 857

Query: 121 IVWKGLLENTEKDRIRRLVRLKPPNE 146
           IVWKGLLENTEKDR+RRL+RLKPP E
Sbjct: 858 IVWKGLLENTEKDRVRRLIRLKPPVE 883

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:2037713	147	AT1G15370 "AT1G15370" [Arabido	0.993	0.993	0.869	2.2e-66
DICTYBASE|DDB_G0293086	178	copZb "coatomer protein comple	0.891	0.735	0.304	1.6e-06
POMBASE|SPCC576.07	190	ret3 "coatomer zeta subunit (p	0.653	0.505	0.285	0.00073

TAIR|locus:2037713 AT1G15370 "AT1G15370" [Arabidopsis thaliana (taxid:3702)]

 Score = 675 (242.7 bits), Expect = 2.2e-66, P = 2.2e-66
 Identities = 127/146 (86%), Positives = 139/146 (95%)

Query:     1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
             MILAVLFANS GN+L+ERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVA HKSVYI
Sbjct:     1 MILAVLFANSVGNVLIERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVACHKSVYI 60

Query:    61 VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
             VYT+LGDVSIF+VGKDEYDELALAE I+ IT+AVKD CGK PTER+FLDKYG+ICLCLDE
Sbjct:    61 VYTMLGDVSIFLVGKDEYDELALAETIYIITAAVKDVCGKPPTERVFLDKYGRICLCLDE 120

Query:   121 IVWKGLLENTEKDRIRRLVRLKPPNE 146
             IVW GLLENT+KDRI+RL+RLKPP+E
Sbjct:   121 IVWNGLLENTDKDRIKRLIRLKPPSE 146

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

DICTYBASE|DDB_G0293086 copZb "coatomer protein complex zeta subunit" [Dictyostelium discoideum (taxid:44689)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 43/141 (30%), Positives = 67/141 (47%)

Query:     2 ILAVLFANSEGNILVERFNGVPAEE--RLHWRSFLVKLGADNLKGVKNEELLVASHKSVY 59
             I A++  ++ G  L   F   P      L  +    KL  +  K   N EL +  +K V 
Sbjct:     8 IKAIIVLDNNGKRLCSCFYDPPGTPITPLTEKDKFEKLIFEKCK-TSNCELEIIDNKVV- 65

Query:    60 IVYTVLGDVSIFVVGKD-EYDELALAEVIFAITSAVKDACGK----IPTERLFLDKYGKI 114
              + +   DV IFVVG     +ELAL +V+  + S  K AC      + T++ FL+ Y  I
Sbjct:    66 -IGSKQSDVWIFVVGNSLNSNELALLDVLNTLISLFKKACATDESIMITKKTFLENYALI 124

Query:   115 CLCLDEIVWKGLLENTEKDRI 135
              L +DEIV  G++   +++ I
Sbjct:   125 RLYIDEIVSDGIIFEVDEETI 145

GO:0006810 "transport" evidence=IEA

GO:0030126 "COPI vesicle coat" evidence=ISS

GO:0006891 "intra-Golgi vesicle-mediated transport" evidence=ISS

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0030663 "COPI-coated vesicle membrane" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

POMBASE|SPCC576.07 ret3 "coatomer zeta subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 98 (39.6 bits), Expect = 0.00073, P = 0.00073
 Identities = 28/98 (28%), Positives = 52/98 (53%)

Query:    49 ELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFL 108
             ++L    K V ++ TV+ DV  ++VG  E +E+ L E + +I  A++     +P +R  L
Sbjct:    62 DILTYDGKLV-VMLTVM-DVIFYIVGGMEENEVMLYECLRSIRDALELLFKYVPDKRTLL 119

Query:   109 DKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 146
             + Y ++ + +DE +  G++  TE   I   V   P +E
Sbjct:   120 ENYDQLVIVVDETIDDGVILETEPALIAARVTKGPVSE 157


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.322   0.141   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      147       147   0.00091  103 3  11 22  0.44    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  582 (62 KB)
  Total size of DFA:  134 KB (2084 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.16u 0.17s 14.33t   Elapsed:  00:00:01
  Total cpu time:  14.16u 0.17s 14.33t   Elapsed:  00:00:01
  Start:  Fri May 10 15:04:10 2013   End:  Fri May 10 15:04:11 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006886 "intracellular protein transport" evidence=IC

GO:0006890 "retrograde vesicle-mediated transport, Golgi to ER" evidence=ISO

GO:0030126 "COPI vesicle coat" evidence=ISO

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: OsI_14394 Os03g0856100 (903 aa) (Oryza sativa Indica)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	147
COG5541	187	COG5541, RET3, Vesicle coat complex COPI, zeta sub	7e-07

>gnl|CDD|227828 COG5541, RET3, Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

 Score = 46.1 bits (109), Expect = 7e-07
 Identities = 33/153 (21%), Positives = 61/153 (39%), Gaps = 11/153 (7%)

Query: 2   ILAVLFANSEGNILVERFNGVPAEERLHWRSF--------LVKLGADNLKGVKNEELLVA 53
           + A+L  +S+G  +  ++   P     H   F          K  A+     +   L+  
Sbjct: 8   VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMFY 67

Query: 54  SHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGK 113
                 ++   L DV +++V   E +E  L +V   I +A+         +R   + Y +
Sbjct: 68  DR---LVMCKRLDDVLLYIVSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQ 124

Query: 114 ICLCLDEIVWKGLLENTEKDRIRRLVRLKPPNE 146
           I L +DE + +G++  T+ D I   V   P  E
Sbjct: 125 IVLLVDETIDEGVILETKSDEIADRVPKPPNFE 157

Length = 187

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	147
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	100.0
COG5030	152	APS2 Clathrin adaptor complex, small subunit [Intr	100.0
KOG3343	175	consensus Vesicle coat complex COPI, zeta subunit	100.0
KOG0936	182	consensus Clathrin adaptor complex, small subunit	100.0
KOG0935	143	consensus Clathrin adaptor complex, small subunit	100.0
KOG0934	145	consensus Clathrin adaptor complex, small subunit	100.0
COG5541	187	RET3 Vesicle coat complex COPI, zeta subunit [Post	99.94
KOG0938	446	consensus Adaptor complexes medium subunit family	99.93
KOG0937	424	consensus Adaptor complexes medium subunit family	99.81
KOG2740	418	consensus Clathrin-associated protein medium chain	99.8
KOG2635	512	consensus Medium subunit of clathrin adaptor compl	99.25
PF15001	189	AP-5_subunit_s1: AP-5 complex subunit sigma-1	97.73
PF03164	415	Mon1: Trafficking protein Mon1; InterPro: IPR00435	96.77
PF08923	119	MAPKK1_Int: Mitogen-activated protein kinase kinas	96.57
PF04099	142	Sybindin: Sybindin-like family ; InterPro: IPR0072	87.77
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	87.03
COG5122	134	TRS23 Transport protein particle (TRAPP) complex s	85.65
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	84.29
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	80.69

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=8.9e-39  Score=230.96  Aligned_cols=137  Identities=26%  Similarity=0.445  Sum_probs=116.3

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHH-HHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCC
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEE-RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY   78 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~e   78 (147)
                      ||+|++|+|++|+++++|||++ +..+ ++.++++.....+   +  ++..++++.++++++||++++||+|++++++++
T Consensus         1 MI~~i~i~n~~G~~i~~k~y~~~~~~~~~~~~~~~~~~~~~---~--~~~~~~i~~~~~~~~vy~~~~dl~~~~v~~~~e   75 (141)
T PF01217_consen    1 MIKAILILNSQGKRILSKYYRDVSEEERQKLFEKFIKKKSS---R--NSKQSPIFEHDNYRIVYKRYSDLYFVVVGDENE   75 (141)
T ss_dssp             SEEEEEEEETTSEEEEEEESSTSTSHHHHHHHHHHHHHHHT---S--SSSSTSEEEETTEEEEEEEETTEEEEEEESSTS
T ss_pred             CEEEEEEEcCCCCEEEehhcCCccHHHHHHHHHHHHHHHHh---c--ccccceeeecccceeeeEeeccEEEEEEeeccc
Confidence            9999999999999999999976 3333 3444444333332   1  223367899999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCC
Q 032088           79 DELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  143 (147)
Q Consensus        79 Nel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~  143 (147)
                      ||++++++|++++++|+.+|+ ++||+++++||+.+|++||||||+|+|+|||++.|++|++++-
T Consensus        76 Nel~~~e~l~~~v~~l~~~~~-~v~e~~i~~N~~~v~~~LDEiid~G~i~etd~~~I~~~v~~~~  139 (141)
T PF01217_consen   76 NELLLLEFLHRLVEVLDDYFG-NVSEKDILENFDLVYLILDEIIDGGIILETDPNVILKRVTMQD  139 (141)
T ss_dssp             BHHHHHHHHHHHHHHHHHHHS-S-SHHHHHHTHHHHHHHHHHHEETTEES--THHHHHHHHHHCC
T ss_pred             chHHHHHHHHHhhhhhhhhhc-cccHHHHHHCHHHHHHHHHHHHhCCEEEECCHHHHHHHHHHhh
Confidence            999999999999999999998 6999999999999999999999999999999999999998863

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]

Probab=100.00  E-value=6.8e-38  Score=221.27  Aligned_cols=135  Identities=19%  Similarity=0.215  Sum_probs=121.8

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCC
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN   79 (147)
                      ||++++|+|++|++|++|||.| +.++|+.+.+.+++++. + |.++++  .+.+..+.++|||||++|||+.+.++++|
T Consensus         1 ~i~~vli~nrqgk~RL~K~yt~~~~~e~~kli~~i~~lIs-~-R~~ke~--N~~e~k~~kiVYrrYA~LyF~f~Vd~~dn   76 (152)
T COG5030           1 MIKFVLIFNRQGKPRLVKWYTPVSDPEQAKLIADIYELIS-A-RKPKES--NFIEGKNEKIVYRRYATLYFVFGVDNDDN   76 (152)
T ss_pred             CeEEEEEEcCCCceeeeEeeccCCcHHHHHHHHHHHHHHH-c-CCchhc--ccccccCcEEEeeecCcEEEEEEEcCCCC
Confidence            8999999999999999999998 67778888888888663 2 222333  38888889999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHh
Q 032088           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVR  140 (147)
Q Consensus        80 el~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~  140 (147)
                      ||+++++||.|+|+|+.+|| +|||+|+++||.++|.+||||+.+|.++|+++..+++++.
T Consensus        77 El~iL~lIh~FVE~lDr~Fg-nVCELdlIFNF~kv~~ILdE~i~gG~i~Es~~~~vl~~v~  136 (152)
T COG5030          77 ELIILELIHNFVEILDRFFG-NVCELDLIFNFQKVYAILDEMILGGEIIESSKNEVLEHVY  136 (152)
T ss_pred             cchHHHHHHHHHHHHHHHhc-cceeeEeEeeHHHHHHHHHHHHhCCeeeecCHHHHHHHHH
Confidence            99999999999999999997 6999999999999999999999999999999999998874

>KOG3343 consensus Vesicle coat complex COPI, zeta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=7e-37  Score=220.50  Aligned_cols=140  Identities=26%  Similarity=0.374  Sum_probs=128.3

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCHHH-HHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088            2 ILAVLFANSEGNILVERFNGVPAEE-RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   80 (147)
                      ++|++|+|++|+|+++|||+++... -+.+.+|++.+++|++|+    +..|..++|..+|||.+-||+|+++|+.+|||
T Consensus         9 vk~iliLD~~G~Ri~aKYY~~~~~s~vkeqkaFEK~lF~KT~kt----~~eI~~ldg~~vvYk~~~Dl~fyv~G~~~ENE   84 (175)
T KOG3343|consen    9 VKAILILDSDGKRILAKYYDDPHPSTVKEQKAFEKNLFSKTSKT----ESEILLLDGNTVVYKSVIDLHFYVVGSEEENE   84 (175)
T ss_pred             hheEEEEcCCCCEeeeeecCCCcchhHHHHHHHHHHHhcccccc----cceeEEecCcEEEEEecccEEEEEecCcchhH
Confidence            6899999999999999999985443 567788888899888664    33499999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCCCC
Q 032088           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPN  145 (147)
Q Consensus        81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~~~  145 (147)
                      +.+.++++++.++++..+++|++++.+++|+|.+++++|||||+|+|+||||+.|+.|+..+|..
T Consensus        85 l~L~svL~~l~dal~llLr~nveKr~llEN~D~i~L~~DEiiD~GvILEtdp~~ia~rv~~~~~~  149 (175)
T KOG3343|consen   85 LMLMSVLTCLFDALSLLLRKNVEKRELLENLDLIFLALDEIIDGGVILETDPNQIAQRVALRPTD  149 (175)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChhHHHHHhhhccceeehhhhccCceEEecCHHHHHHHhccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999766654

>KOG0936 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-34  Score=207.48  Aligned_cols=142  Identities=18%  Similarity=0.171  Sum_probs=118.2

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHHhcccCCCCCCcc----ceEEEecCEEEEEEEeCcEEEEEEEc
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEE----LLVASHKSVYIVYTVLGDVSIFVVGK   75 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~----~~i~~~~~~~ivy~~~~dl~~~~v~~   75 (147)
                      ||+|++|+|++|++|++|||++ +.+.|+.+.+....+..+  |...-|+    ...+--.+.+++||+|+.|||+.|.+
T Consensus         1 MI~AvlifNn~gkPRL~KFY~p~~~~~Qq~lir~vf~lvs~--R~~n~~nFLe~~~l~g~~d~rlIYrhYATLYFvfvvD   78 (182)
T KOG0936|consen    1 MIKAVLIFNNKGKPRLVKFYTPVDEEKQQQLIREVFHLVSK--RPDNVCNFLEGNSLIGGSDNRLIYRHYATLYFVFVVD   78 (182)
T ss_pred             CeeEEEEecCCCCcceeeecCcCChHHHHHHHHHHHHHHHc--CCchHhhhhccccccCCccceeehheeeeEEEEEEEc
Confidence            9999999999999999999999 666565555555554422  2222121    11221237999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCCCC
Q 032088           76 DEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPN  145 (147)
Q Consensus        76 ~~eNel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~~~  145 (147)
                      ++|+||+++++||.|+|+|++.|. ++||.|+++|++++|.+|+|++.||.++||+.+.|...+..+.+-
T Consensus        79 ~sEsEL~iLDLIQvfVEtLDkCF~-nVcELDliF~~~k~h~iL~EiV~GGmVlETn~neIv~av~~~nkl  147 (182)
T KOG0936|consen   79 SSESELGILDLIQVFVETLDKCFE-NVCELDLIFNWQKVHAILAEIVMGGMVLETNMNEIVAAVDEQNKL  147 (182)
T ss_pred             CCcchhHHHHHHHHHHHHHHHHHH-hhhhhhheeeHHHHHHHHHHHHhCCeEEeccHHHHHHHHHHhchh
Confidence            999999999999999999999885 799999999999999999999999999999999999998877654

>KOG0935 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=8.8e-34  Score=196.05  Aligned_cols=137  Identities=16%  Similarity=0.149  Sum_probs=116.9

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCC
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN   79 (147)
                      ||.+|+|.|++|++|++|||.+ +..+++......++++..  |..+- +..+.......+.+|+|++|||+.+.+..+|
T Consensus         1 mi~FILiqNr~Gk~RLak~yv~~dd~ek~~~~~~vh~lvs~--Rd~K~-~~~~~~~~~~~~~~rryagLyf~~~vd~tDn   77 (143)
T KOG0935|consen    1 MIRFILIQNRAGKTRLAKWYVQFDDDEKQKLIEEVHALVTV--RDAKH-TNFVEFRNFKIIYRRRYAGLYFCICVDVTDN   77 (143)
T ss_pred             CeEEEEEEccccceeheeeeeccCchHHHHHHHHHHHHHhh--ccchh-hhheeeeeceEEEEEeeCCEEEEEEEecCCc
Confidence            9999999999999999999998 445566777777776631  22221 2234445556666679999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhc
Q 032088           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRL  141 (147)
Q Consensus        80 el~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~  141 (147)
                      |++.++.||.|+|+|+.+|+ |+||.|+++||.+||.++|||+-+|.++||++..+++|+.+
T Consensus        78 elayLe~IHlFVEvLd~fF~-NVCELDlvFNFyKVy~i~DEm~l~GEi~Etsk~~vlerl~~  138 (143)
T KOG0935|consen   78 ELAYLEHIHLFVEVLDEFFH-NVCELDLVFNFYKVYTIVDEMFLAGEIRETSKTKVLERLLM  138 (143)
T ss_pred             hHHHHHHHHHHHHHHHHHhc-cccceeeeeeeeeHHHHHHHHHHhhhhhhhhHHHHHHHHHH
Confidence            99999999999999999997 69999999999999999999999999999999999999975

>KOG0934 consensus Clathrin adaptor complex, small subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.3e-33  Score=199.19  Aligned_cols=133  Identities=22%  Similarity=0.270  Sum_probs=117.4

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHH-HhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCC
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVK-LGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY   78 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~-i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~e   78 (147)
                      ||+++++.+++|+.|++|||.+ +..+|+.+++.+.+ +.+   |.++.|+  +++++++++|||||++|+|++...+++
T Consensus         1 mi~f~LlvsrQGk~rL~k~y~~~~~~er~~i~re~i~~~La---r~pk~cs--fie~kd~kvVyrryasl~f~~~v~~~d   75 (145)
T KOG0934|consen    1 MIKFFLLVSRQGKTRLQKWYEALSIKERKKIERELIKSVLA---RKPKMCS--FIEYKDEKVVYRRYASLFFCVGVEDND   75 (145)
T ss_pred             CeEEEEEEeccCceehhHHHhhhcHHHHHHHHHHHHHHHHh---CCccccc--chhccCceehhhhhhhEEEEEEEecCC
Confidence            8999999999999999999998 77777776666544 332   3334444  889999999999999998888888999


Q ss_pred             CHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHH
Q 032088           79 DELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLV  139 (147)
Q Consensus        79 Nel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i  139 (147)
                      |||+++|+||.++|+|++||| +|||+|+++||.++|.+|||++-+|-++|+.++.....+
T Consensus        76 NEL~~LE~IH~~vE~lDkYFg-~VCELDiiFNfekay~ILde~~~~g~~~e~~k~~~~~~i  135 (145)
T KOG0934|consen   76 NELAILEFIHNYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLLGGEIQETSKNDVLKAI  135 (145)
T ss_pred             chhhHHHHHHHHHHHHHHHhc-cceeeEEEEehHhHHHHHHHHhcCcchHhhhcccHHHHH
Confidence            999999999999999999997 699999999999999999999999999999998877776

>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=7.8e-27  Score=168.13  Aligned_cols=139  Identities=24%  Similarity=0.333  Sum_probs=123.6

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCHHH---------HHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEE
Q 032088            2 ILAVLFANSEGNILVERFNGVPAEE---------RLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFV   72 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~   72 (147)
                      +.|++|+|++|++++.|||.|++..         -+..+.|++++.+++++..+    .|..+.++.++|+++-|+.+++
T Consensus         8 v~a~LilDsqGeriy~kyy~pph~~eg~~~vFnsvkkekefek~l~eKt~k~~~----~Il~f~d~lV~~k~~~dv~~yi   83 (187)
T COG5541           8 VEALLILDSQGERIYRKYYQPPHRSEGHQLVFNSVKKEKEFEKKLAEKTAKDRE----SILMFYDRLVMCKRLDDVLLYI   83 (187)
T ss_pred             eeeeEEecCCccchhhhhcCCcccccccchhhcchhHHHHHHHHHHHHhhcCcc----ceeeEcceeeeeeeehhEEEEE
Confidence            6899999999999999999985321         13456677778877766533    3888999999999999999999


Q ss_pred             EEcCCCCHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCCCC
Q 032088           73 VGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPPN  145 (147)
Q Consensus        73 v~~~~eNel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~~~  145 (147)
                      +++-++||..+.+.+..+..+|..+++...+++.+.+|||.+.+++||.||+|+|+||+++.|+.|+ .|||+
T Consensus        84 v~~meeNE~~l~q~f~~ir~Al~li~k~~~dkr~v~enYDqivl~vdEtid~Gvilet~s~~ia~rv-~K~p~  155 (187)
T COG5541          84 VSPMEENEPFLGQVFDEIRAALILIVKTPTDKRNVWENYDQIVLLVDETIDEGVILETKSDEIADRV-PKPPN  155 (187)
T ss_pred             ecccccccHHHHHHHHHHHHHHHHHHcCCcchhhHHhhhceEEEeeehhcccceEeecChHHHHHhC-CCCCC
Confidence            9999999999999999999999999998888999999999999999999999999999999999999 67765

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.4e-25  Score=177.86  Aligned_cols=137  Identities=18%  Similarity=0.195  Sum_probs=127.4

Q ss_pred             CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   80 (147)
                      ||+|++|+|.+|++++.|.|+.+.. |+.-+.|..+++. +    .+.++|+...+++.++|.+..|||+++++.+|.|-
T Consensus         1 misglfi~n~rGevlink~fr~dlk-rs~~diFRv~vi~-n----~d~r~PV~~igsttf~~~r~~nl~lvaitksN~Nv   74 (446)
T KOG0938|consen    1 MISGLFIYNLRGEVLINKTFRDDLK-RSIVDIFRVQVIN-N----LDVRSPVLTIGSTTFHHIRSSNLWLVAITKSNANV   74 (446)
T ss_pred             CcceEEEEeccCcEEEehhhhhhhh-hhHHHHHHHhhhh-c----cccCCCeeEecceeEEEEeeccEEEEEEecCCCch
Confidence            9999999999999999999999654 7788888888883 2    45678999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCCC
Q 032088           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP  144 (147)
Q Consensus        81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~~  144 (147)
                      .+++||+..+.+++..||| ..+|..+.+||..+|++||||+|.|+|++|+|+.++..++.++.
T Consensus        75 a~v~eFl~kl~avm~aYfg-k~~Eeaiknnf~lI~ElLDemld~G~pqnte~~al~~~is~~~V  137 (446)
T KOG0938|consen   75 AAVFEFLYKLDAVMNAYFG-KDREEAIKNNFVLIYELLDEMLDFGIPQNTEPNALKAQISQKGV  137 (446)
T ss_pred             hhHHHHHHHHHHHHHHHhc-ccchhhhhhceEeHHHHHHHHHhcCCCccCChhHHHhhhhhhhh
Confidence            9999999999999999998 49999999999999999999999999999999999999987764

>KOG0937 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=7.5e-19  Score=144.67  Aligned_cols=136  Identities=15%  Similarity=0.164  Sum_probs=122.7

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHH
Q 032088            2 ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDEL   81 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel   81 (147)
                      +++++++|.+|+++++|-|+.+. .....++|...++.+   ...+..+|++.++|..++|.++.+||+++.+..|.|..
T Consensus         1 ~sa~fild~~G~~lisr~yr~dv-~~s~~~~F~~~l~~~---e~~~~~~p~l~~~g~~~~~ik~s~lylv~~~~~n~~a~   76 (424)
T KOG0937|consen    1 ASAVFILDHKGEVLISRDYRGDV-PMSSTEKFFRKLFEK---EEGDESPPFLVHDGSRFIHIKHSNLYLVAGTRPNVSAA   76 (424)
T ss_pred             CceEEEEcCCCcEeEeecccccC-ChhhhhhHHHHHhhh---cccCCCCCeEEeCCceEEEEeecceEEEEEeccCCCHH
Confidence            57999999999999999999853 366778888665532   23456778999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcC
Q 032088           82 ALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK  142 (147)
Q Consensus        82 ~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~  142 (147)
                      .++++++++++++.+||+ .+.|..+.+|+..+|++|||++|.|++|.|+++.+.+.+.++
T Consensus        77 ~v~~~l~~~~~v~~~y~~-~l~e~si~~n~vlvyElLde~mDFGypQ~t~s~iL~~yi~~~  136 (424)
T KOG0937|consen   77 LVLSFLYAVADVFGDYLS-ELEEESIRDNFVLVYELLDEVMDFGYPQTTDSEILKNYITQK  136 (424)
T ss_pred             HHHHHHHHHHHHHHHHhc-cCCccceecchHHHHHHHHHHhccCCcccchHHHHHHHhccc
Confidence            999999999999999998 599999999999999999999999999999999999999887

>KOG2740 consensus Clathrin-associated protein medium chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=1.6e-19  Score=145.47  Aligned_cols=135  Identities=19%  Similarity=0.218  Sum_probs=109.6

Q ss_pred             CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   80 (147)
                      ||+++++.|.+|+.++.|.++...-.|+...-|+..-. +.  ...+..+|++....+++.-.-..++++++++..+..+
T Consensus         1 mi~siflidtsg~l~lek~~~g~t~~rsic~~f~e~~~-~~--~~~e~~ppvi~~p~hylfsv~~~~i~~~~~st~e~pP   77 (418)
T KOG2740|consen    1 MILSIFLIDTSGDLLLEKHLKGSTVVRSICDYFFEDQS-SD--DDLEHVPPVISTPHHYLFSVYRDLIFFCAVSTVETPP   77 (418)
T ss_pred             CeeEEEEEcCCchhhhhHhhCCceeeeehHHHHHHhhh-hc--cccccCCceecCCceeeeeeeccCcEEEEEEeccCCC
Confidence            99999999999999999999974444555554444333 21  2234455666565566665556677778888878889


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHH
Q 032088           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLV  139 (147)
Q Consensus        81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i  139 (147)
                      |.+.|||+++++++..|||+ .++..+.+|+..||++||||+|+|++..||++.+++.|
T Consensus        78 L~~iefL~rv~dv~~eyFg~-~s~~~Ik~N~~vv~ell~emiDnGfpl~tE~NiLke~i  135 (418)
T KOG2740|consen   78 LMVIEFLHRVVDVLLEYFGG-LSESKIKDNVVVVYELLDEMIDNGFPLVTEPNILKELI  135 (418)
T ss_pred             hhHHHHHHHHHHHHHHHhcc-cCHhHhhcceeeHHHHHHHHHHcCCCcccChhHHHhhc
Confidence            99999999999999999985 99999999999999999999999999999999998887

>KOG2635 consensus Medium subunit of clathrin adaptor complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.25  E-value=8.9e-11  Score=97.20  Aligned_cols=136  Identities=19%  Similarity=0.264  Sum_probs=118.4

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHH
Q 032088            2 ILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDEL   81 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel   81 (147)
                      +-+..+.+++|+.+++|.|+.  -.|.+++.++....+ - -+ ...++.+++-+.+++||+...++|++++++.+.|-|
T Consensus         3 vlaa~i~t~~Gk~ivsRqf~~--Msr~RIEgLl~aFpk-L-v~-~~~qhT~vEt~~VRYVYqP~d~lY~vLITtk~SNIl   77 (512)
T KOG2635|consen    3 VLAASINTKTGKAIVSRQFRE--MSRSRIEGLLAAFPK-L-VS-AGKQHTFVETDSVRYVYQPLDNLYIVLITTKQSNIL   77 (512)
T ss_pred             EEEEEEeecCCceeeehHhHh--hhHHHHHHHHHHhHH-h-hc-cCCCccEEecccEEEEEEecccEEEEEEeccccchh
Confidence            567788899999999999995  347778877766542 1 11 124567889999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCC
Q 032088           82 ALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  143 (147)
Q Consensus        82 ~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~  143 (147)
                      --++.|+.|..+...||. .++|+.+.+|-..+...+||++.-||-.+++...|+....|.+
T Consensus        78 eDl~TL~Lfskvipey~~-slde~eI~~~~FelifAFDEivsLGyre~v~laQikty~eMdS  138 (512)
T KOG2635|consen   78 EDLETLRLFSKVIPEYCS-SLDEKEILENAFELIFAFDEIVSLGYRENVNLAQIKTYLEMDS  138 (512)
T ss_pred             hHHHHHHHHHHhchhhhh-hhhHHHHHHhhhhhhhccchhhhhcccccccHHHhhhhhcccc
Confidence            999999999999999997 6999999999999999999999999999999999999988765

>PF15001 AP-5_subunit_s1: AP-5 complex subunit sigma-1

Probab=97.73  E-value=0.0052  Score=46.51  Aligned_cols=80  Identities=13%  Similarity=0.118  Sum_probs=70.0

Q ss_pred             CEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHH
Q 032088           57 SVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIR  136 (147)
Q Consensus        57 ~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~  136 (147)
                      ...++|...+++.|.+|.++.||-++.-.+|+.++..|.+.++.-..-..++.+-|.+..+|+..+-.|-.+=.|.+.++
T Consensus       103 ~k~vvW~~v~~l~ftLVce~hEN~lLa~~~L~~~~~~l~~~~~~l~~~~e~l~k~d~i~aiL~~fLP~GQLLFlN~~~~k  182 (189)
T PF15001_consen  103 PKIVVWLGVGSLCFTLVCEPHENRLLAENTLRLFIRHLLEHLKILSQPSEVLLKSDRILAILHRFLPHGQLLFLNHRFVK  182 (189)
T ss_pred             CcEEEeeccCCEEEEEEecCchhHHHHHHHHHHHHHHHHHHHHHhCcHHHhhhhHHHHHHHHHHhCCCCcEEEEcHHHHH
Confidence            47899999999999999999999999999999999999888853233366788999999999999999988888877654

>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain

Probab=96.77  E-value=0.046  Score=46.12  Aligned_cols=89  Identities=15%  Similarity=0.109  Sum_probs=58.2

Q ss_pred             eEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHH
Q 032088            3 LAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELA   82 (147)
Q Consensus         3 ~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~   82 (147)
                      +-+||+++.||++++||  ++...-..+-..+..++.-- .... ...--+..+++++|+-..+-|+++++++.+|++-.
T Consensus        12 kh~fIlS~AGKPIysr~--G~e~~l~~~~g~~~aiiS~~-~~~~-d~l~~i~~~~~~ivfl~r~pl~lv~vS~~~e~~~~   87 (415)
T PF03164_consen   12 KHFFILSSAGKPIYSRY--GDEDKLSSLMGVIQAIISFF-QSNG-DELRSIRAGDHRIVFLNRGPLILVAVSKTGESESQ   87 (415)
T ss_pred             CeEEEECCCCceeEEec--CChHHHHHHHHHHHHHHHHH-HhCC-CcEEEEEeCCEEEEEEecCCEEEEEEcCCcCCHHH
Confidence            34799999999999999  32232333333444433211 1111 22224457899999999999999999999999877


Q ss_pred             HHHHHHHHHHHHH
Q 032088           83 LAEVIFAITSAVK   95 (147)
Q Consensus        83 l~e~l~~~~e~L~   95 (147)
                      +..-|+.++.-+-
T Consensus        88 l~~qL~~ly~qil  100 (415)
T PF03164_consen   88 LRKQLDYLYSQIL  100 (415)
T ss_pred             HHHHHHHHHHHHH
Confidence            7666655554433

In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].

>PF08923 MAPKK1_Int: Mitogen-activated protein kinase kinase 1 interacting; InterPro: IPR015019 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases

Probab=96.57  E-value=0.081  Score=37.21  Aligned_cols=93  Identities=9%  Similarity=0.066  Sum_probs=63.1

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCH--HHHHH----HHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEc
Q 032088            2 ILAVLFANSEGNILVERFNGVPA--EERLH----WRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~--~~~~~----~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   75 (147)
                      +.+|+|.|++|-+++.=......  .-|..    +-....|.. | +.- .....-+..++++.++.-....+++.++++
T Consensus        17 l~~I~itDrDGvpi~~v~~~~~~~~~~~~~~~~tf~~a~~Q~~-K-L~l-G~nk~ii~~Y~~~qvv~~~~~pl~it~ias   93 (119)
T PF08923_consen   17 LQAIVITDRDGVPIAKVSSDSAPESAMRPSLLSTFAMAIDQAS-K-LGL-GKNKSIIAYYDSYQVVQFNKLPLYITFIAS   93 (119)
T ss_dssp             EEEEEEEETTS-EEEEEE-TTS-GGGGSHHHHCCHHHHHHHHT-T-SSS--SEEEEEEEESSEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEECCCCcEEEEecCCCCcchhhhhHHHHHHHHHhhccc-c-cCC-CCceEEEEEeCCEEEEEEeCCCeEEEEEec
Confidence            57999999999998885555421  11111    122223332 1 111 223445788999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhH
Q 032088           76 DEYDELALAEVIFAITSAVKDA   97 (147)
Q Consensus        76 ~~eNel~l~e~l~~~~e~L~~~   97 (147)
                      ++.|-=+++.+=+.+...+...
T Consensus        94 ~~aN~G~il~l~~~L~~~l~~l  115 (119)
T PF08923_consen   94 SNANTGLILSLEEELAPILNEL  115 (119)
T ss_dssp             TTS-HHHHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHhHHHHHHHHHHH
Confidence            9999999999888888888764

Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This entry represents Mitogen-activated protein kinase kinase 1 interacting protein, which is a small subcellular adaptor protein required for MAPK signalling and ERK1/2 activation. The overall topology of this domain has a central five-stranded beta-sheet sandwiched between a two alpha-helix and a one alpha-helix layer []. ; PDB: 1VEU_A 1VET_A 1SKO_A 2ZL1_A 3CPT_A.

>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses

Probab=87.77  E-value=8.2  Score=27.67  Aligned_cols=96  Identities=11%  Similarity=0.070  Sum_probs=52.3

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCH---------HHHHHHHHHH-------HHHhcccCCCC--CCccceEEEecCEEEE-E
Q 032088            2 ILAVLFANSEGNILVERFNGVPA---------EERLHWRSFL-------VKLGADNLKGV--KNEELLVASHKSVYIV-Y   62 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~---------~~~~~~~~~~-------~~i~~~~~~~~--~~~~~~i~~~~~~~iv-y   62 (147)
                      |..+.|+|+.|.-++.|-|....         +++..+-..+       .++.....+..  ..+.-.-+..+.+++- |
T Consensus         1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~   80 (142)
T PF04099_consen    1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF   80 (142)
T ss_dssp             EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred             CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence            67899999999999999998622         2332222222       22221110100  0111223445566554 4


Q ss_pred             EEeCcEEEEEEEcCCCCHHHHHHHHHHHHHHHHhHh
Q 032088           63 TVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDAC   98 (147)
Q Consensus        63 ~~~~dl~~~~v~~~~eNel~l~e~l~~~~e~L~~~~   98 (147)
                      ..-.++-|+++++.+... ..-++++.+.++..+|.
T Consensus        81 eT~TGlKFvl~td~~~~~-~~~~l~~~~~~lY~dyV  115 (142)
T PF04099_consen   81 ETPTGLKFVLITDPNVPS-LRDELLRIYYELYVDYV  115 (142)
T ss_dssp             E-TTS-EEEEEE-TTCCH-CHHHHHHHHHHHHHHHH
T ss_pred             EcCcCcEEEEEecCCCcc-HHHHHHHHHHHHHHHHH
Confidence            568889999999988754 34556778888877765

Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.03  E-value=12  Score=28.76  Aligned_cols=85  Identities=12%  Similarity=0.139  Sum_probs=57.6

Q ss_pred             CCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHH
Q 032088           10 SEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFA   89 (147)
Q Consensus        10 ~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~   89 (147)
                      .+|-+++++|=.-+.. -..+-++.-+.+    .+. +.+.....+|+|.+-|.+-+++.++++++++..--.-+.||..
T Consensus         9 ARGTvvLaeft~~~gN-f~sva~qiL~kl----p~~-~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFLe~   82 (217)
T KOG0859|consen    9 ARGTVILAEFTEFSGN-FSSIAAQILQKL----PSS-SNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFLER   82 (217)
T ss_pred             ecceEEEEeeeeccCC-HHHHHHHHHHhC----CCC-CCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHHHH
Confidence            6899999998765222 112222322222    221 2223456789999999999999999999998777777777777


Q ss_pred             HHHHHHhHhcC
Q 032088           90 ITSAVKDACGK  100 (147)
Q Consensus        90 ~~e~L~~~~~~  100 (147)
                      +-+-+.+-.|+
T Consensus        83 Ik~~F~k~YG~   93 (217)
T KOG0859|consen   83 IKEDFKKRYGG   93 (217)
T ss_pred             HHHHHHHHhcc
Confidence            77777666665

>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]

Probab=85.65  E-value=10  Score=26.61  Aligned_cols=97  Identities=16%  Similarity=0.142  Sum_probs=56.9

Q ss_pred             ceEEEEEeCCCCEEEEecCCCCHHHHHH-----HHHHHHH---HhcccCCCCCCccceEEEecC-EEEEEEEeCcEEEEE
Q 032088            2 ILAVLFANSEGNILVERFNGVPAEERLH-----WRSFLVK---LGADNLKGVKNEELLVASHKS-VYIVYTVLGDVSIFV   72 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~~~~~~~-----~~~~~~~---i~~~~~~~~~~~~~~i~~~~~-~~ivy~~~~dl~~~~   72 (147)
                      +++++|+|+.|..++.|-|..+..+...     +..-++.   +..+...-...+.-.++..++ ...+|+...++-|++
T Consensus         3 ve~~~iINksGglifqref~~~et~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~kFV~   82 (134)
T COG5122           3 VEQFFIINKSGGLIFQREFGEGETELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGTKFVF   82 (134)
T ss_pred             eeEEEEEecCCcEEEEEeccCCccccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCcEEEE
Confidence            7899999999999999999652221100     1111111   111110000111112445555 566889999999999


Q ss_pred             EEcC-CCCHHHHHHHHHHHHHHHHhHhcCC
Q 032088           73 VGKD-EYDELALAEVIFAITSAVKDACGKI  101 (147)
Q Consensus        73 v~~~-~eNel~l~e~l~~~~e~L~~~~~~~  101 (147)
                      ++.+ ..|.+.-   ++.+++..++|.-+|
T Consensus        83 ~~~k~t~na~~q---l~kiY~lYsdYV~kn  109 (134)
T COG5122          83 VAEKRTVNALFQ---LQKIYSLYSDYVTKN  109 (134)
T ss_pred             EecCCchhHHHH---HHHHHHHHHHHhhcC
Confidence            9954 4554433   677888888887554

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=84.29  E-value=8.5  Score=24.56  Aligned_cols=49  Identities=10%  Similarity=0.164  Sum_probs=43.4

Q ss_pred             eEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHHHHHHHhHhc
Q 032088           51 LVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACG   99 (147)
Q Consensus        51 ~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~~e~L~~~~~   99 (147)
                      .....+++.+-|..-+++.++++++.+...-..+.+|+.+.+-...-++
T Consensus        17 ~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~   65 (83)
T PF13774_consen   17 MSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYG   65 (83)
T ss_dssp             EEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCT
T ss_pred             EEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcC
Confidence            3566889999999999999999999999999999999999999888876

...

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.69  E-value=24  Score=27.33  Aligned_cols=100  Identities=15%  Similarity=0.147  Sum_probs=65.6

Q ss_pred             CceEEEEEe-CCCCEEEEecC--CCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCC
Q 032088            1 MILAVLFAN-SEGNILVERFN--GVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE   77 (147)
Q Consensus         1 MI~~ili~n-~~G~~~l~k~Y--~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~   77 (147)
                      ||..-+|.- ++|-++.+-.=  ..+...-...+.+.+.+.++- .+.+..+. -++.|.+.+-|...+++++.++++.+
T Consensus         1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkL-s~~s~~r~-Sietg~f~fHfli~~~Vcylvicd~~   78 (216)
T KOG0862|consen    1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKL-SQQSPTRC-SIETGPFVFHFLIESGVCYLVICDKS   78 (216)
T ss_pred             CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhc-cCCCCccc-ccccCCeEEEEEecCCEEEEEEecCC
Confidence            455444444 46666655432  112222235555666666432 11111111 23456799999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhHhcCCC
Q 032088           78 YDELALAEVIFAITSAVKDACGKIP  102 (147)
Q Consensus        78 eNel~l~e~l~~~~e~L~~~~~~~v  102 (147)
                      ..--+.+..|+.+.+-+.+.++.++
T Consensus        79 yP~kLAF~YLedL~~EF~~~~~~~~  103 (216)
T KOG0862|consen   79 YPRKLAFSYLEDLAQEFDKSYGKNI  103 (216)
T ss_pred             CcHHHHHHHHHHHHHHHHHhccccc
Confidence            9999999999999999999887654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	147
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	1e-17
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	2e-10
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	1e-09

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A Length = 153

 Score = 73.8 bits (181), Expect = 1e-17
 Identities = 28/144 (19%), Positives = 62/144 (43%), Gaps = 8/144 (5%)

Query: 1   MILAVLFANSEGNILVERF--NGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSV 58
            + A+L  +++G+ L  ++  +  P+ +    +    K   +      +E  L+     V
Sbjct: 12  TVKAILILDNDGDRLFAKYYDDTYPSVKE---QKAFEKNIFNKTHRTDSEIALLEGLTVV 68

Query: 59  YIVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCL 118
           Y       D+  +V+G    +EL L  V+  +  ++     K   +R  L+    + L +
Sbjct: 69  YKSS---IDLYFYVIGSSYENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAV 125

Query: 119 DEIVWKGLLENTEKDRIRRLVRLK 142
           DEIV  G++  ++  ++   V L+
Sbjct: 126 DEIVDGGVILESDPQQVVHRVALR 149

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1 Length = 158

 Score = 54.4 bits (130), Expect = 2e-10
 Identities = 21/140 (15%), Positives = 56/140 (40%), Gaps = 4/140 (2%)

Query: 1   MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYI 60
           M+  +L  + +G + ++++    +++    R  +V+     +   K +       + + +
Sbjct: 1   MMRFMLLFSRQGKLRLQKWYLATSDKE---RKKMVRELMQVVLARKPKMCSFLEWRDLKV 57

Query: 61  VYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDE 120
           VY     +      + + +EL   E+I      +    G +  E   +  + K    LDE
Sbjct: 58  VYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFGSV-CELDIIFNFEKAYFILDE 116

Query: 121 IVWKGLLENTEKDRIRRLVR 140
            +  G +++T K  + + + 
Sbjct: 117 FLMGGDVQDTSKKSVLKAIE 136

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S Length = 142

 Score = 52.2 bits (125), Expect = 1e-09
 Identities = 18/140 (12%), Positives = 48/140 (34%), Gaps = 6/140 (4%)

Query: 1   MILAVLFANSEGNILVER-FNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVY 59
           MI  +L  N  G   + + +     +E+      +  +    +     +       ++  
Sbjct: 1   MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAV----VTVRDAKHTNFVEFRNFK 56

Query: 60  IVYTVLGDVSIFVVGKDEYDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLD 119
           I+Y     +   +      + LA  E I      + +    +  E   +  + K+   +D
Sbjct: 57  IIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFHNV-CELDLVFNFYKVYTVVD 115

Query: 120 EIVWKGLLENTEKDRIRRLV 139
           E+   G +  T + ++ + +
Sbjct: 116 EMFLAGEIRETSQTKVLKQL 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	100.0
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	100.0
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	100.0
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	100.0
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	99.98
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	96.65
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	95.15
3cpt_A	143	Mitogen-activated protein kinase kinase 1- interac	94.16
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	93.46
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	92.7
2j3t_C	145	Trafficking protein particle complex subunit 1, tr	92.4
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	91.5
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	90.98
3cue_C	159	Transport protein particle 18 kDa subunit; membran	84.56

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=100.00  E-value=6.4e-42  Score=249.86  Aligned_cols=137  Identities=19%  Similarity=0.318  Sum_probs=119.5

Q ss_pred             CceEEEEEeCCCCEEEEecCCC---CHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCC
Q 032088            1 MILAVLFANSEGNILVERFNGV---PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE   77 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~---~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~   77 (147)
                      ||+|++|+|++|++|++|||++   +.++|+.+++.+.+.+.   |.  +  +|+..+++++++||+++||||+++++.+
T Consensus        12 mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~---r~--~--~~i~~~~~~~~vy~~~~~Lyfv~~~~~~   84 (153)
T 3tjz_C           12 TVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTH---RT--D--SEIALLEGLTVVYKSSIDLYFYVIGSSY   84 (153)
T ss_dssp             CEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHS---SC--C--CCEEEETTEEEEEEECSSCEEEEEEETT
T ss_pred             HheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHh---CC--C--CCEEEECCEEEEEEEECCEEEEEEEcCC
Confidence            8999999999999999999997   44567777765555442   22  2  4799999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCCC
Q 032088           78 YDELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKPP  144 (147)
Q Consensus        78 eNel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~~  144 (147)
                      +||++++++||+++++|++||++++||+++++||+++|++||||+|+|+|+|||++.|++|+.++..
T Consensus        85 eNel~ile~L~~~ve~l~~yf~~~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~I~~~v~~~~~  151 (153)
T 3tjz_C           85 ENELMLMTVLNCLFDSLSQMLRKNVEKRALLENMEGLFLAVDEIVDGGVILESDPQQVVHRVALRGE  151 (153)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHTC-----
T ss_pred             CChHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHcCCEeeeCCHHHHHHHHhcccC
Confidence            9999999999999999999996689999999999999999999999999999999999999988753

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=100.00  E-value=1.6e-39  Score=238.26  Aligned_cols=137  Identities=16%  Similarity=0.221  Sum_probs=120.8

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCC
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYD   79 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eN   79 (147)
                      ||+|++|+|++|+++++|||++ +..+|+.+++...++..+  +  ++..+|++.+++++++|+++++|||+++++.++|
T Consensus         1 MI~~i~Il~~~Gk~~lsk~y~~~~~~~~~~~~~~~~~~i~~--~--~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~N   76 (158)
T 1w63_Q            1 MMRFMLLFSRQGKLRLQKWYLATSDKERKKMVRELMQVVLA--R--KPKMCSFLEWRDLKVVYKRYASLYFCCAIEGQDN   76 (158)
T ss_dssp             CEEEEEEECSSSCEEEEEESSCCCHHHHHHHHHHHHHHHHT--S--CSSSCSEEEETTEEEEEEEETTEEEEEEECSSSC
T ss_pred             CeEEEEEECCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHhc--c--CCCCCCeEEECCEEEEEEEECCEEEEEEecCCCC
Confidence            9999999999999999999998 444455555444444422  2  2235789999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcC
Q 032088           80 ELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLK  142 (147)
Q Consensus        80 el~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~  142 (147)
                      |++++++||.++++|++||| ++||.++++||+++|++||||+|+|+|++||++.|++++.++
T Consensus        77 el~~le~L~~~vevl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~eT~~~~l~~~I~~~  138 (158)
T 1w63_Q           77 ELITLELIHRYVELLDKYFG-SVCELDIIFNFEKAYFILDEFLMGGDVQDTSKKSVLKAIEQA  138 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHHHHTTEETTEESCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHc-cCCHHHHHHhHHHHHHHHHHHHhCCEEEecCHHHHHHHHhcc
Confidence            99999999999999999997 599999999999999999999999999999999999999764

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=100.00  E-value=2.7e-38  Score=227.91  Aligned_cols=135  Identities=13%  Similarity=0.198  Sum_probs=117.6

Q ss_pred             CceEEEEEeCCCCEEEEecCCC-CHHHH-HHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCC
Q 032088            1 MILAVLFANSEGNILVERFNGV-PAEER-LHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEY   78 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~-~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~e   78 (147)
                      ||+|++|+|++|+++++|||++ +...+ +..+.+...+..   +  ++..+|++.+++++++|+++++|||+++++.++
T Consensus         1 MI~~i~i~~~~Gk~~l~k~y~~~~~~~~~~~~~~f~~~v~~---~--~~~~~~~~~~~~~~~vy~~~~~Lyfv~~~~~~~   75 (142)
T 2vgl_S            1 MIRFILIQNRAGKTRLAKWYMQFDDDEKQKLIEEVHAVVTV---R--DAKHTNFVEFRNFKIIYRRYAGLYFCICVDVND   75 (142)
T ss_dssp             CEEEEEEEETTSCEEEEEECSCCCHHHHHHHHHHHHHHHHT---C--CTTSCSEEEETTEEEEEEEETTEEEEEEECTTS
T ss_pred             CeEEEEEEcCCCCEEEEEeCCCCChhhhHHHHHHHHHHHhc---C--CCCCCCEEEECCEEEEEEEECCEEEEEEeCCCC
Confidence            9999999999999999999996 43333 444555555542   2  223578999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhc
Q 032088           79 DELALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRL  141 (147)
Q Consensus        79 Nel~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~  141 (147)
                      ||++++++||.++++|++||| ++||+++++||+++|++||||+|+|+|++|++..|++++..
T Consensus        76 N~l~~le~L~~~ve~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~et~~~~il~~~~~  137 (142)
T 2vgl_S           76 NNLAYLEAIHNFVEVLNEYFH-NVCELDLVFNFYKVYTVVDEMFLAGEIRETSQTKVLKQLLM  137 (142)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTT-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHc-cCCHHHHHHHHHHHHHHHHHHHhCCEEEEcCHHHHHHHHHh
Confidence            999999999999999999997 69999999999999999999999999999998888888743

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=100.00  E-value=3e-33  Score=232.86  Aligned_cols=137  Identities=17%  Similarity=0.200  Sum_probs=122.7

Q ss_pred             CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   80 (147)
                      ||+|++|+|++|+++++|||++... |...+.|...+..+.    ....++++.+++++++|+++++|||+++++.++||
T Consensus         1 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~----~~~~~~ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~   75 (435)
T 2vgl_M            1 MIGGLFIYNHKGEVLISRVYRDDIG-RNAVDAFRVNVIHAR----QQVRSPVTNIARTSFFHVKRSNIWLAAVTKQNVNA   75 (435)
T ss_dssp             CCCEEEEECTTCCEEEEEECSSSCC-HHHHHHHHHHTTTCS----SCCCCSEEEETTEEEEEEEETTEEEEEEESSCCCH
T ss_pred             CeEEEEEECCCCCEEEEEecCCCCC-hhHHHHHHHHHhccc----cCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            9999999999999999999997333 556777877766321    12456899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCC
Q 032088           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  143 (147)
Q Consensus        81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~  143 (147)
                      |+++|+||.++++|++||+ ++||++|++||+++|++||||+|+|+|++||++.|++++.+++
T Consensus        76 l~~le~L~~~v~vl~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~  137 (435)
T 2vgl_M           76 AMVFEFLYKMCDVMAAYFG-KISEENIKNNFVLIYELLDEILDFGYPQNSETGALKTFITQQG  137 (435)
T ss_dssp             HHHHHHHHHHHHHHHHHHS-SCCHHHHHHTHHHHHHHHHHHEETTEECCCCHHHHGGGCCCCC
T ss_pred             HHHHHHHHHHHHHHHHHHh-ccCHHHHHHhHHHHHHHHHHHhcCCEEEecCHHHHHHHhcccc
Confidence            9999999999999999998 6999999999999999999999999999999999998887665

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.98  E-value=5.4e-33  Score=230.62  Aligned_cols=138  Identities=13%  Similarity=0.133  Sum_probs=122.0

Q ss_pred             CceEEEEEeCCCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCH
Q 032088            1 MILAVLFANSEGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDE   80 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNe   80 (147)
                      ||+|++|+|++|+++++|||++... +...+.|...+.++.   .....++++.+++++++|+++++|||+++++.++||
T Consensus         2 MI~~i~I~~~~Gk~~l~k~y~~~~~-~~~~~~f~~~v~~~~---~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~   77 (423)
T 1w63_M            2 SASAVYVLDLKGKVLICRNYRGDVD-MSEVEHFMPILMEKE---EEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACV   77 (423)
T ss_dssp             CCCEEEEEETTTEECSCBCCSCSCT-TTTHHHHHHHHHHHH---HTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCT
T ss_pred             ceEEEEEECCCCCEEEEEecCCCCC-hHHHHHHHHHHhhcc---ccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCH
Confidence            8999999999999999999997322 345677777766322   112356799999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHhHhcCCCCHHHHHhcHHHHHHHHHHHhhCCEEeeeCHHHHHHHHhcCC
Q 032088           81 LALAEVIFAITSAVKDACGKIPTERLFLDKYGKICLCLDEIVWKGLLENTEKDRIRRLVRLKP  143 (147)
Q Consensus        81 l~l~e~l~~~~e~L~~~~~~~v~e~~i~~n~~~v~~lLDEiid~G~i~etd~~~i~~~i~~~~  143 (147)
                      |+++|+||.++++|++||| ++||++|++||+++|++||||+|+|+|++||++.|++++.+++
T Consensus        78 l~~le~L~~~v~~l~~yf~-~v~E~~I~~Nf~~vy~lLDE~id~G~~~~t~~~~l~~~i~~~~  139 (423)
T 1w63_M           78 SLVFSFLYKVVQVFSEYFK-ELEEESIRDNFVIIYELLDELMDFGYPQTTDSKILQEFITQEG  139 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHSS-CCSHHHHHHHHHHHHHHHHHHCSSSSCCCCCSTTTTTTCCSCC
T ss_pred             HHHHHHHHHHHHHHHHHHh-hcCHHHHHHhHHHHHHHHHHHhcCCEEeecCHHHHHHhhcCCC
Confidence            9999999999999999996 6999999999999999999999999999999999999997765

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=96.65  E-value=0.079  Score=38.91  Aligned_cols=98  Identities=11%  Similarity=0.106  Sum_probs=67.7

Q ss_pred             CceEEEEEeCCCCEEEEecCCCC-H--HHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCC
Q 032088            1 MILAVLFANSEGNILVERFNGVP-A--EERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDE   77 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~-~--~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~   77 (147)
                      ||...+|.-.....+|+.+++.+ .  .++..+..+...++++. ....+.. ..+..+++.+.|..-++++++++++.+
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki-~~~~~~r-~s~~~~~y~fhy~~~~gl~~l~i~d~~   79 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKL-NEQSPTR-CTLEAGAMTFHYIIEQGVCYLVLCEAA   79 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHC-CTTSCSE-EEEEETTEEEEEEEETTEEEEEEEETT
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhc-CCCCCCe-EEEEeCCEEEEEEeCCCeEEEEEEcCC
Confidence            77777776654456666677642 1  23445555556666432 2112222 245678999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHHHHhHhcC
Q 032088           78 YDELALAEVIFAITSAVKDACGK  100 (147)
Q Consensus        78 eNel~l~e~l~~~~e~L~~~~~~  100 (147)
                      ...-..+.+|..+.+-+..-++.
T Consensus        80 yp~r~af~fL~~i~~~F~~~~~~  102 (196)
T 2nut_C           80 FPKKLAFAYLEDLHSEFDEQHGK  102 (196)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHHHHHHhccc
Confidence            99999999999988887776653

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=95.15  E-value=0.22  Score=34.82  Aligned_cols=95  Identities=12%  Similarity=0.026  Sum_probs=64.4

Q ss_pred             ceEEEEEeCCC--CEEEEecCCCC---HHHHHHHHHH---H-HHHhcccCCCCCCccceEEEecCEEEEEE-EeCcEEEE
Q 032088            2 ILAVLFANSEG--NILVERFNGVP---AEERLHWRSF---L-VKLGADNLKGVKNEELLVASHKSVYIVYT-VLGDVSIF   71 (147)
Q Consensus         2 I~~ili~n~~G--~~~l~k~Y~~~---~~~~~~~~~~---~-~~i~~~~~~~~~~~~~~i~~~~~~~ivy~-~~~dl~~~   71 (147)
                      |.++.|+-..+  -++|+..++-+   .-+|.....|   . +++.++.   ++..+ ..+.++++.+-|. +.+++.++
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~---~~~~R-~sv~~~~y~fH~~~~~~gl~~l   82 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRT---GAGQR-QSIEEGNYIGHVYARSEGICGV   82 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHC---CTTEE-EEEEETTEEEEEEECTTSEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhC---CCCce-EEEEeCCEEEEEEEecCCEEEE
Confidence            55676665443  57888888752   2234333333   2 3344332   12222 2456789999888 77999999


Q ss_pred             EEEcCCCCHHHHHHHHHHHHHHHHhHhcC
Q 032088           72 VVGKDEYDELALAEVIFAITSAVKDACGK  100 (147)
Q Consensus        72 ~v~~~~eNel~l~e~l~~~~e~L~~~~~~  100 (147)
                      ++++.+...-..+.+|+.+.+-+..-++.
T Consensus        83 ~i~D~~yp~rvAF~~L~~i~~eF~~~y~~  111 (144)
T 3bw6_A           83 LITDKEYPVRPAYTLLNKILDEYLVAHPK  111 (144)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCG
T ss_pred             EEECCCCChhHHHHHHHHHHHHHHHHccc
Confidence            99999999999999999888888776653

>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A

Probab=94.16  E-value=0.99  Score=31.74  Aligned_cols=93  Identities=8%  Similarity=0.064  Sum_probs=64.2

Q ss_pred             ceEEEEEeCCCCEEEEecCCC-CH-HHHHH----HHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEc
Q 032088            2 ILAVLFANSEGNILVERFNGV-PA-EERLH----WRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~-~~-~~~~~----~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   75 (147)
                      +.+|+|.|++|-+++.-..+. +. .-|..    +-..-.|..|-.+   .....-|..++++.+|.-...-+++.++++
T Consensus        38 l~aI~ItDrDGVpi~kv~~~~~~e~~~r~s~lsTf~~A~dQ~sKLgl---GknksII~~Y~~yqvVq~n~~Plvit~Ias  114 (143)
T 3cpt_A           38 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGL---SKNKSIICYYNTYQVVQFNRLPLVVSFIAS  114 (143)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTC---CCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEECCCCcEEEEecCCCCchhhcccchhhhHHHHHHHHhhcCC---CCCceEEEEecCeEEEEEecCCEEEEEEec
Confidence            689999999999999888875 21 11211    2222223321111   122334678999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHhH
Q 032088           76 DEYDELALAEVIFAITSAVKDA   97 (147)
Q Consensus        76 ~~eNel~l~e~l~~~~e~L~~~   97 (147)
                      ++.|-=+++.+=+.+...|..+
T Consensus       115 ~~aNtG~Il~Le~~L~p~l~~L  136 (143)
T 3cpt_A          115 SSANTGLIVSLEKELAPLFEEL  136 (143)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCchhHhhhHHHHHHHHHHH
Confidence            9999998888766666666553

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=93.46  E-value=0.62  Score=33.94  Aligned_cols=83  Identities=10%  Similarity=0.193  Sum_probs=58.1

Q ss_pred             CCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHH
Q 032088           11 EGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAI   90 (147)
Q Consensus        11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~   90 (147)
                      +|.++|+.|=..+..    +.....+++++- .  +..+-....++++.+-|..-++++++++++.+...-..+.+|..+
T Consensus        11 rg~~iLae~t~~~gn----f~~ia~~iL~ki-p--~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL~~i   83 (189)
T 4b93_A           11 RGTTILAKHAWCGGN----FLEVTEQILAKI-P--SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV   83 (189)
T ss_dssp             ETTEEEEEEESSEEC----HHHHHHHHHTTC-C--SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             eCCEEEEeCCCCCCC----HHHHHHHHHHhC-C--CCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHHHHH
Confidence            589999997443211    111223344322 1  112223557899999999999999999999999999999999998


Q ss_pred             HHHHHhHhcC
Q 032088           91 TSAVKDACGK  100 (147)
Q Consensus        91 ~e~L~~~~~~  100 (147)
                      .+-+..-++.
T Consensus        84 ~~eF~~~~~~   93 (189)
T 4b93_A           84 KKRFQTTYGS   93 (189)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHhhccc
Confidence            8888776653

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=92.70  E-value=2  Score=30.83  Aligned_cols=83  Identities=11%  Similarity=0.221  Sum_probs=58.9

Q ss_pred             CCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHH
Q 032088           11 EGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAI   90 (147)
Q Consensus        11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~   90 (147)
                      +|.++|+.|-..+..    +....++++++. .. .+.+ ..+..+++.+-|..-+++.++++++.+..--..+.+|..+
T Consensus        53 RG~~VLae~t~~~gn----f~~iak~ll~kl-~~-~~~r-~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fLedI  125 (169)
T 2vx8_A           53 RGTTILAKHAWCGGN----FLEVTEQILAKI-PS-ENNK-LTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV  125 (169)
T ss_dssp             ETTEEEEEEESSCBS----HHHHHHHHHTTS-CS-SCEE-EEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             cCCEEEEEeccCCCC----HHHHHHHHHhhC-CC-CCCc-eEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHHHHH
Confidence            367888887543221    222334455433 11 1112 2456899999999999999999999999999999999999


Q ss_pred             HHHHHhHhcC
Q 032088           91 TSAVKDACGK  100 (147)
Q Consensus        91 ~e~L~~~~~~  100 (147)
                      .+-+..-++.
T Consensus       126 ~~eF~~~y~~  135 (169)
T 2vx8_A          126 KKRFQTTYGS  135 (169)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHhhh
Confidence            9998887764

>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}

Probab=92.40  E-value=1.9  Score=30.00  Aligned_cols=95  Identities=9%  Similarity=0.048  Sum_probs=56.6

Q ss_pred             CceEEEEEeCCCCEEEEecCCCC-------HHHHHHHHHHHH---HHhcccCCCCCC-ccceEEEecCEEE-EEEEeCcE
Q 032088            1 MILAVLFANSEGNILVERFNGVP-------AEERLHWRSFLV---KLGADNLKGVKN-EELLVASHKSVYI-VYTVLGDV   68 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~-------~~~~~~~~~~~~---~i~~~~~~~~~~-~~~~i~~~~~~~i-vy~~~~dl   68 (147)
                      ||.++.|+|++|..++.|-|.++       .++.+..-.-+.   .+.++- ...+. ..-..+..+++++ .|..-.++
T Consensus         2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~kl-sp~~~~~~~~~~~t~~ykl~~~~T~Tgi   80 (145)
T 2j3t_C            2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKM-SPLDMKDGFLSFQTSRYKLHYYETPTGI   80 (145)
T ss_dssp             CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHH-CSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred             eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHh-CCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence            58899999999999999999652       222222211111   122111 11111 1112334566544 45556789


Q ss_pred             EEEEEEcCCCCHHHHHHHHHHHH-HHHHhHh
Q 032088           69 SIFVVGKDEYDELALAEVIFAIT-SAVKDAC   98 (147)
Q Consensus        69 ~~~~v~~~~eNel~l~e~l~~~~-e~L~~~~   98 (147)
                      -|+++++.++++  +-++++.++ ++.-++.
T Consensus        81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~v  109 (145)
T 2j3t_C           81 KVVMNTDLGVGP--IRDVLHHIYSALYVEFV  109 (145)
T ss_dssp             EEEEEECTTCCC--CHHHHHHHHHTTHHHHT
T ss_pred             EEEEEecCCcch--HHHHHHHHHHHHHHHHH
Confidence            999999987665  567888888 6776643

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=91.50  E-value=2.6  Score=30.97  Aligned_cols=94  Identities=10%  Similarity=0.111  Sum_probs=64.0

Q ss_pred             ceEEEEEeCCCC--EEEEecCCC---CHHHHHH---HHHHHH-HHhcccCCCCCCccceEEEecCEEEE-EEEeCcEEEE
Q 032088            2 ILAVLFANSEGN--ILVERFNGV---PAEERLH---WRSFLV-KLGADNLKGVKNEELLVASHKSVYIV-YTVLGDVSIF   71 (147)
Q Consensus         2 I~~ili~n~~G~--~~l~k~Y~~---~~~~~~~---~~~~~~-~i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~   71 (147)
                      |.++.|+...|.  ++++.-|+-   +.=+|..   +-.|.. .+.++.   +++.. ..+..+++.+- |.+-++++++
T Consensus         4 ~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~---~~~~r-~s~~~~~y~fH~y~~~~gl~yl   79 (199)
T 3kyq_A            4 LYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERS---AKGSR-ASVKEQEYLCHVYVRSDSLAGV   79 (199)
T ss_dssp             EEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTS---CTTEE-EEEECSSEEEEEEECTTSEEEE
T ss_pred             EEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcC---CCCCe-EEEEeCCEEEEEEEecCCEEEE
Confidence            567888876554  356777764   2223433   333443 354332   22222 24567888888 8999999999


Q ss_pred             EEEcCCCCHHHHHHHHHHHHHHHHhHhc
Q 032088           72 VVGKDEYDELALAEVIFAITSAVKDACG   99 (147)
Q Consensus        72 ~v~~~~eNel~l~e~l~~~~e~L~~~~~   99 (147)
                      ++++.+...-..+.+|..+.+-+..-++
T Consensus        80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~  107 (199)
T 3kyq_A           80 VIADSEYPSRVAFTLLEKVLDEFSKQVD  107 (199)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHhcc
Confidence            9999999999999999988888877665

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=90.98  E-value=2.6  Score=30.31  Aligned_cols=83  Identities=10%  Similarity=0.163  Sum_probs=58.4

Q ss_pred             CCCEEEEecCCCCHHHHHHHHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEcCCCCHHHHHHHHHHH
Q 032088           11 EGNILVERFNGVPAEERLHWRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGKDEYDELALAEVIFAI   90 (147)
Q Consensus        11 ~G~~~l~k~Y~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~~~eNel~l~e~l~~~   90 (147)
                      +|.++|+.|=..+..-    .....+++++. .  ...+-.....+++.+-|..-+++.++++++.+..--..+.+|..+
T Consensus        63 rg~tiLAE~t~~~gnf----~~va~~iL~ki-p--~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FLedI  135 (173)
T 4afi_A           63 RGTTILAKHAWCGGNF----LEVTEQILAKI-P--SENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFLNEV  135 (173)
T ss_dssp             ETTEEEEEEESSCCCH----HHHHHHHHTTS-C--SSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHHHHH
T ss_pred             CCCEEEEEccCCCCCH----HHHHHHHHHhC-C--CCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHHHHH
Confidence            4889999886542111    11223344322 1  111223556899999999999999999999999999999999999


Q ss_pred             HHHHHhHhcC
Q 032088           91 TSAVKDACGK  100 (147)
Q Consensus        91 ~e~L~~~~~~  100 (147)
                      .+-+..-++.
T Consensus       136 ~~eF~~~yg~  145 (173)
T 4afi_A          136 KKRFQTTYGS  145 (173)
T ss_dssp             HHHHHHHHGG
T ss_pred             HHHHHHHhch
Confidence            8888877763

>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}

Probab=84.56  E-value=8.6  Score=27.12  Aligned_cols=95  Identities=11%  Similarity=0.077  Sum_probs=51.3

Q ss_pred             CceEEEEEeCCCCEEEEecCCCC-------------HHHHHHHHHHH---HHHhcccCCCCCC-ccceEEEecCEEE-EE
Q 032088            1 MILAVLFANSEGNILVERFNGVP-------------AEERLHWRSFL---VKLGADNLKGVKN-EELLVASHKSVYI-VY   62 (147)
Q Consensus         1 MI~~ili~n~~G~~~l~k~Y~~~-------------~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~i~~~~~~~i-vy   62 (147)
                      ||.++.|+|++|+.++.|-|.+.             .++.+..-..+   ..+.++ +..... +.-..+..+.+++ .|
T Consensus         2 ~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~k-ls~~~~~~~f~~~~T~~ykl~~~   80 (159)
T 3cue_C            2 GIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQK-LSKGSVKNDIRSISTGKYRVHTY   80 (159)
T ss_dssp             CCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHH-SCCSSSCCCEEEEECSSCBEEEE
T ss_pred             eEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHH-hCCCCCCCCeEEEeeCCEEEEEE
Confidence            48999999999999999988531             11111111111   112211 111111 1111222344444 34


Q ss_pred             EEeCcEEEEEEEcCCCCHHHHHHHHHHHHH-HHHhHh
Q 032088           63 TVLGDVSIFVVGKDEYDELALAEVIFAITS-AVKDAC   98 (147)
Q Consensus        63 ~~~~dl~~~~v~~~~eNel~l~e~l~~~~e-~L~~~~   98 (147)
                      ..-.++-|+++++..++++  -++++.+++ +.-+|.
T Consensus        81 eT~TgiKFvl~td~~~~~i--~~~l~~iy~~lYv~yv  115 (159)
T 3cue_C           81 CTASGLWFVLLSDFKQQSY--TQVLQYIYSHIYVKYV  115 (159)
T ss_dssp             CCSSCCEEEEECCSSSSCT--HHHHHHHHHHHHHHHH
T ss_pred             EeCCCCEEEEEeCCCcchH--HHHHHHHHHHHHHHHH
Confidence            4456899999999876644  467777776 666643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	147
d2vgls_	142	d.110.4.2 (S:) Sigma2 adaptin (clathrin coat assem	1e-17
d2vglm2	141	d.110.4.2 (M:1-141) Mu2 adaptin (clathrin coat ass	4e-14

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	147
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	100.0
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	100.0
d3cpta1	116	MEK binding partner 1, MP1 {Human (Homo sapiens) [	96.54
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	90.54

>d3cpta1 d.110.7.1 (A:3-118) MEK binding partner 1, MP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: Roadblock/LC7 domain
family: Roadblock/LC7 domain
domain: MEK binding partner 1, MP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.54  E-value=0.044  Score=35.76  Aligned_cols=92  Identities=7%  Similarity=0.042  Sum_probs=65.0

Q ss_pred             ceEEEEEeCCCCEEEEecCCCC-H-HHHHH----HHHHHHHHhcccCCCCCCccceEEEecCEEEEEEEeCcEEEEEEEc
Q 032088            2 ILAVLFANSEGNILVERFNGVP-A-EERLH----WRSFLVKLGADNLKGVKNEELLVASHKSVYIVYTVLGDVSIFVVGK   75 (147)
Q Consensus         2 I~~ili~n~~G~~~l~k~Y~~~-~-~~~~~----~~~~~~~i~~~~~~~~~~~~~~i~~~~~~~ivy~~~~dl~~~~v~~   75 (147)
                      ++||+|.|++|-++++=.-... . .-|..    +-..-.+..|-.+   .....-+..++++.+|.-....+++.++++
T Consensus        17 l~~I~iTDrDGVpv~~v~~~~~p~~~~~~~~lstf~~a~dq~sKLgl---g~~ksii~~Y~~~qvv~~~~~pl~vt~ia~   93 (116)
T d3cpta1          17 LHAIVVSDRDGVPVIKVANDNAPEHALRPGFLSTFALATDQGSKLGL---SKNKSIICYYNTYQVVQFNRLPLVVSFIAS   93 (116)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCGGGGSHHHHHHHHHHHHHHHHHTC---CCEEEEEEECSSEEEEEEEETTEEEEEEEE
T ss_pred             eEEEEEEcCCCcEEEEecCCCChhhhcchHHHHHHHHHHHhhcccCC---CCCcEEEEEecCeEEEEEecCceEEEEEec
Confidence            6899999999999987766541 1 11211    1111122221111   123445778999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHHh
Q 032088           76 DEYDELALAEVIFAITSAVKD   96 (147)
Q Consensus        76 ~~eNel~l~e~l~~~~e~L~~   96 (147)
                      .+.|-=+++.+-+.+...|..
T Consensus        94 ~~aNtG~Il~l~~~l~~~L~~  114 (116)
T d3cpta1          94 SSANTGLIVSLEKELAPLFEE  114 (116)
T ss_dssp             TTSCHHHHHHHHHHHHHHHHH
T ss_pred             CCCChHHHHHHHHHHHHHHhh
Confidence            999999999988888777765

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.54  E-value=0.91  Score=29.81  Aligned_cols=93  Identities=12%  Similarity=0.056  Sum_probs=59.7

Q ss_pred             ceEEEEEeC--CCCEEEEecCCC---CHHHHHHHHHHH---HH-HhcccCCCCCCccceEEEecCEEEE-EEEeCcEEEE
Q 032088            2 ILAVLFANS--EGNILVERFNGV---PAEERLHWRSFL---VK-LGADNLKGVKNEELLVASHKSVYIV-YTVLGDVSIF   71 (147)
Q Consensus         2 I~~ili~n~--~G~~~l~k~Y~~---~~~~~~~~~~~~---~~-i~~~~~~~~~~~~~~i~~~~~~~iv-y~~~~dl~~~   71 (147)
                      |.++.|+..  +.-+.|+.-++-   +.-+|...+.+.   .+ +.++.   ++..+. .+.++++.+- |.+..+|+++
T Consensus         3 l~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt---~~g~r~-sv~~~~y~~h~yv~~~gl~~l   78 (140)
T d1ioua_           3 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRT---GAGERQ-SIEEGNYIGHVYARSEGICGV   78 (140)
T ss_dssp             CCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHC---CSSSEE-EEEETTEEEEEECCSSSCEEE
T ss_pred             EEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcC---CCCceE-EEEcCCeEEEEEEeeCCEEEE
Confidence            456677764  334567777774   233465544443   33 33322   222232 3467777766 7788899999


Q ss_pred             EEEcCCCCHHHHHHHHHHHHHHHHhHh
Q 032088           72 VVGKDEYDELALAEVIFAITSAVKDAC   98 (147)
Q Consensus        72 ~v~~~~eNel~l~e~l~~~~e~L~~~~   98 (147)
                      ++++.+...-..+.+|+.+.+-...-+
T Consensus        79 ~i~d~~Yp~r~AF~~L~~i~~eF~~~~  105 (140)
T d1ioua_          79 LITDKQYPVRPAYTLLNKILDEYLVAH  105 (140)
T ss_dssp             EEBCTTSCHHHHHHHHHHHHHHHHHSS
T ss_pred             EEECCCcchHHHHHHHHHHHHHHHHHc
Confidence            999999999999999987666554433