Citrus Sinensis ID: 032109

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------
Protein Sequence
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEGVVY
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccEEEEcccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccEEEEcccccccccccccccccccccccEEEEEcccccccccccccccccccccEEEccccccccccccccccccccccccccccccHcccHHHHHccccccccccHHHccccccccHcccccEEEEEEEc
Coil and Loop (DISEMBL)
mggcccssrkphlhgtpvyyycppaleeresltshngtastftRGLLvdfhleastpdtfrapplplpydvvfgcppstdsesvgetvsggsfeTLAMCEvvedadcktqassliasprksevsqlnvfaaseeedtcpiclegvvy
Flexible Loop (DISEMBL)
mggcccssrkphlhgtpVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQAssliasprkseVSQLNVfaaseeedtcpiclegvvy
Low Complexity Region (SEG)
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDsesvgetvsggsFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEGVVY
Disordered region (IsUnstruct)
****CC***KPHLHGTPVYYYCPPALE*********GTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGC****************SFETLAMCEVVEDADC*****************************TCPICLEG***
Disordered Region (DISOPRED)
********R*****GTPVYYYCPPA***********************DFHLEASTPDTFRAPPLPLPYDVV***********************************************************SEEEDTCPICLEGVVY
Disordered Region (DISEMBL)
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPS**********SGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEGVVY
Disordered Region (DISPRO)
************LHGTPVYYYCPPALEE*ESL*****TASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCP********************************************SEVSQLNVFAASEEEDTCPICLEGVVY
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTFRAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRKSEVSQLNVFAASEEEDTCPICLEGVVY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
255541644	199	protein binding protein, putative [Ricin	0.972	0.718	0.731	2e-54
224130328	186	predicted protein [Populus trichocarpa]	0.972	0.768	0.737	1e-53
224067912	185	predicted protein [Populus trichocarpa]	0.979	0.778	0.689	2e-49
356520392	191	PREDICTED: E3 ubiquitin-protein ligase A	0.972	0.748	0.655	2e-45
356560785	227	PREDICTED: uncharacterized protein LOC10	0.972	0.629	0.641	4e-45
356531973	184	PREDICTED: E3 ubiquitin-protein ligase A	0.959	0.766	0.620	1e-42
357504425	191	RING finger protein [Medicago truncatula	0.972	0.748	0.606	2e-41
356568411	184	PREDICTED: E3 ubiquitin-protein ligase A	0.959	0.766	0.613	5e-41
225454365	184	PREDICTED: E3 ubiquitin-protein ligase A	0.918	0.733	0.593	3e-38
79324959	189	RING-H2 finger B1A [Arabidopsis thaliana	0.959	0.746	0.589	9e-36

>gi|255541644|ref|XP_002511886.1| protein binding protein, putative [Ricinus communis] gi|223549066|gb|EEF50555.1| protein binding protein, putative [Ricinus communis]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 106/145 (73%), Positives = 120/145 (82%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRKPHLHGTPVYYYCPPALEE ESLTSHNG AS F  GLL + +L  STPDTF
Sbjct: 9   MGGCCCSSRKPHLHGTPVYYYCPPALEEHESLTSHNGVASAFAAGLLAELNLNTSTPDTF 68

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           RAPP PLPYD+V GC  S+DSES+ ET+SGGSFETLA CE +ED DC+T ASSL  SP+K
Sbjct: 69  RAPPAPLPYDMVLGCRRSSDSESIRETISGGSFETLATCEDLEDPDCRTLASSLPVSPKK 128

Query: 121 SEVSQL--NVFAASEEEDTCPICLE 143
            ++S+L  NV +A+EEED CPICLE
Sbjct: 129 PDISKLSENVVSATEEEDACPICLE 153

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224130328|ref|XP_002320810.1| predicted protein [Populus trichocarpa] gi|222861583|gb|EEE99125.1| predicted protein [Populus trichocarpa]

 Score =  214 bits (544), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 107/145 (73%), Positives = 120/145 (82%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRKPHLHGTPVYYYCPPALEE  SLTSHNG AS FT GLLV+ HL  STPDTF
Sbjct: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEEHGSLTSHNGAASAFTAGLLVELHLNTSTPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           R PP PLPYDV+ GCP S  SESV ET+S GSF TLA CE +++ DC+TQASSL+ SPRK
Sbjct: 61  RPPPAPLPYDVILGCPQSPFSESVQETISRGSFGTLATCEDLDELDCETQASSLLVSPRK 120

Query: 121 SEVSQLN--VFAASEEEDTCPICLE 143
           SEV++L+  V +A+EEED CPICLE
Sbjct: 121 SEVTKLHEPVASATEEEDACPICLE 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067912|ref|XP_002302595.1| predicted protein [Populus trichocarpa] gi|222844321|gb|EEE81868.1| predicted protein [Populus trichocarpa]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/145 (68%), Positives = 113/145 (77%), Gaps = 1/145 (0%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRKPHL+GTPVYYYCPPALEE  SLTSHN  AS FT GLLV+ +L  STPDTF
Sbjct: 1   MGGCCCSSRKPHLNGTPVYYYCPPALEEHVSLTSHNVAASAFTAGLLVELNLNTSTPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
             PP+PLPYDVV GCP S DSESV E +S  SFETLA CE +E+ DCKT ASS + SPRK
Sbjct: 61  HPPPVPLPYDVVLGCPQSPDSESVREIISRSSFETLATCEDLEELDCKTHASSFLFSPRK 120

Query: 121 SEVSQLNV-FAASEEEDTCPICLEG 144
           S+V + +   A++ EED CPICLE 
Sbjct: 121 SDVKKFHEPVASATEEDACPICLEA 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520392|ref|XP_003528846.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max]

 Score =  186 bits (473), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 95/145 (65%), Positives = 112/145 (77%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHLHGTPVYYYCPP LEE ESLTS++GTA++ T GLLV  +LE STPDT+
Sbjct: 1   MGGCCCSARKPHLHGTPVYYYCPPTLEEHESLTSNDGTATSLTTGLLVGLNLETSTPDTY 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
             PP PLPYD+V G P STDSES  ETVSG SFETL  C+  E++DCK +A+S   SP K
Sbjct: 61  HPPPAPLPYDMVLGGPASTDSESGRETVSGSSFETLITCKDPEESDCKIKANSAPISPSK 120

Query: 121 SEVSQLNVFAA--SEEEDTCPICLE 143
           + +S+   F A  +EEED CPICLE
Sbjct: 121 AGLSKSKEFHALVTEEEDGCPICLE 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560785|ref|XP_003548668.1| PREDICTED: uncharacterized protein LOC100804435 [Glycine max]

 Score =  186 bits (471), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 93/145 (64%), Positives = 113/145 (77%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHLHGTPVYYYCPP LEERESLTS++G A + T GLLV  +LE STPDT+
Sbjct: 37  MGGCCCSARKPHLHGTPVYYYCPPTLEERESLTSNDGRAMSLTTGLLVGLNLETSTPDTY 96

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           ++PP P PYD+V G P STDSES   TVSG SFETL  C+ +E++DCK +A+S   SP K
Sbjct: 97  QSPPAPPPYDMVLGGPASTDSESGRVTVSGSSFETLITCDDLEESDCKAKANSAPISPSK 156

Query: 121 SEVSQLNVFAA--SEEEDTCPICLE 143
           +E+S+   F A  +EEED CPICL+
Sbjct: 157 AELSKSKEFHALVTEEEDGCPICLD 181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531973|ref|XP_003534550.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max]

 Score =  177 bits (449), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 90/145 (62%), Positives = 109/145 (75%), Gaps = 4/145 (2%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHL G PVYYYCPP  EERESLTS+NGT ++   G L+  +LEAS PDTF
Sbjct: 1   MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNNGTNASVNAGFLIGLNLEASMPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           ++PP+PLPYD+V G   ST SES  ETVS  SFETL   E VE++DCK QA+S + SPRK
Sbjct: 61  QSPPVPLPYDMVLGGSASTYSESGRETVS--SFETLITREDVEESDCKAQANSALTSPRK 118

Query: 121 SEVSQLNV--FAASEEEDTCPICLE 143
           +++ + NV     +EEED CPICLE
Sbjct: 119 AQLPKSNVTQVLVTEEEDVCPICLE 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357504425|ref|XP_003622501.1| RING finger protein [Medicago truncatula] gi|357514547|ref|XP_003627562.1| RING finger protein [Medicago truncatula] gi|355497516|gb|AES78719.1| RING finger protein [Medicago truncatula] gi|355521584|gb|AET02038.1| RING finger protein [Medicago truncatula] gi|388504160|gb|AFK40146.1| unknown [Medicago truncatula]

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 88/145 (60%), Positives = 104/145 (71%), Gaps = 2/145 (1%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RK HLHGTPVYYYCPP LEE + L S++    + T GLLV  ++E STPDT+
Sbjct: 1   MGGCCCSARKTHLHGTPVYYYCPPILEEHDPLASNDAANDSLTAGLLVGLNVEESTPDTY 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           + PP PLPYDVV G P STDSES  +TVSG SFETL  CE +E++D K QA S   SP K
Sbjct: 61  QPPPAPLPYDVVLGVPVSTDSESGKDTVSGSSFETLVTCEDIEESDLKAQAKSAPISPTK 120

Query: 121 SEVSQLNVFAA--SEEEDTCPICLE 143
           +E+ + N   A   EEED CPICLE
Sbjct: 121 AELWKSNELHALVIEEEDGCPICLE 145

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568411|ref|XP_003552404.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290-like [Glycine max]

 Score =  172 bits (435), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 89/145 (61%), Positives = 107/145 (73%), Gaps = 4/145 (2%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCS+RKPHL G PVYYYCPP  EERESLTS++G  ++   G LV  +LEAS PDTF
Sbjct: 1   MGGCCCSARKPHLQGAPVYYYCPPTFEERESLTSNDGLNASVNAGFLVGLNLEASMPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           + PP+PLPYD+V G   STDSES  ETVS  SFET    E VE++DCK QA+S   SP+K
Sbjct: 61  QPPPVPLPYDMVLGGSASTDSESGRETVS--SFETSITLEDVEESDCKAQANSAPTSPKK 118

Query: 121 SEVSQLNVFA--ASEEEDTCPICLE 143
           +++S+ NV     +EEED CPICLE
Sbjct: 119 AQLSKSNVTQELVTEEEDVCPICLE 143

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225454365|ref|XP_002278589.1| PREDICTED: E3 ubiquitin-protein ligase At3g02290 [Vitis vinifera] gi|297745359|emb|CBI40439.3| unnamed protein product [Vitis vinifera]

 Score =  162 bits (411), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 86/145 (59%), Positives = 99/145 (68%), Gaps = 10/145 (6%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCCCSSRK  L GTPVYYYCPP L+E E LTSHNG AS F   LLVD +L+ S PDT+
Sbjct: 1   MGGCCCSSRKTQLRGTPVYYYCPPTLQEHEFLTSHNGAASAFAAELLVDLNLQTSIPDTY 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
           R PP P+PYDVV G P STD + VGET++G         + +  +DCKTQASSL  SPRK
Sbjct: 61  RPPPAPIPYDVVLGHPRSTDCDPVGETINGS--------KGLRVSDCKTQASSLPTSPRK 112

Query: 121 SE--VSQLNVFAASEEEDTCPICLE 143
            E  +S    F   EE+D CPICLE
Sbjct: 113 FELPISNEPNFLPLEEDDACPICLE 137

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79324959|ref|NP_001031564.1| RING-H2 finger B1A [Arabidopsis thaliana] gi|332656461|gb|AEE81861.1| RING-H2 finger B1A [Arabidopsis thaliana]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 86/146 (58%), Positives = 99/146 (67%), Gaps = 5/146 (3%)

Query: 1   MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
           MGGCC SSRK HL GTPVYYYCP + EE     +  G  S FT GLLVD  LE S PDTF
Sbjct: 1   MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query: 61  RAPPLPLPYDVVFGCPPSTDSESVGETVSGGSFETLAMCEVVEDADCKTQASSLIASPRK 120
            AP  PLPYD++ G P  TDSES+   +SG SFETLA CE + ++DCKT ASS+I SPRK
Sbjct: 61  CAPA-PLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILSPRK 119

Query: 121 SEVSQ---LNVFAASEEEDTCPICLE 143
           S+ S+   L +    EEED CPIC E
Sbjct: 120 SDFSKHQGLKIL-VDEEEDCCPICFE 144

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	147
TAIR|locus:505006415	190	RHB1A "RING-H2 finger B1A" [Ar	0.959	0.742	0.547	1.1e-38
TAIR|locus:2177881	212	AT5G41350 [Arabidopsis thalian	0.517	0.358	0.512	5.2e-21

TAIR|locus:505006415 RHB1A "RING-H2 finger B1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 385 (140.6 bits), Expect = 1.1e-38, Sum P(2) = 1.1e-38
 Identities = 80/146 (54%), Positives = 91/146 (62%)

Query:     1 MGGCCCSSRKPHLHGTPVYYYCPPALEERESLTSHNGTASTFTRGLLVDFHLEASTPDTF 60
             MGGCC SSRK HL GTPVYYYCP + EE     +  G  S FT GLLVD  LE S PDTF
Sbjct:     1 MGGCCSSSRKSHLVGTPVYYYCPESFEELVPSGTRAGVGSAFTTGLLVDIGLETSIPDTF 60

Query:    61 RAPPLPLPYDVVFGCPPSTDXXXXXXXXXXXXFETLAMCEVVEDADCKTQASSLIASPRK 120
              AP  PLPYD++ G P  TD            FETLA CE + ++DCKT ASS+I SPRK
Sbjct:    61 CAPA-PLPYDLLLGRPQCTDSESIKGRMSGSSFETLATCEDLGESDCKTLASSVILSPRK 119

Query:   121 SEVSQ---LNVFAASEEEDTCPICLE 143
             S+ S+   L +    EEED CPIC E
Sbjct:   120 SDFSKHQGLKILV-DEEEDCCPICFE 144

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0048573 "photoperiodism, flowering" evidence=RCA

TAIR|locus:2177881 AT5G41350 [Arabidopsis thaliana (taxid:3702)]

 Score = 200 (75.5 bits), Expect = 5.2e-21, Sum P(2) = 5.2e-21
 Identities = 41/80 (51%), Positives = 52/80 (65%)

Query:     1 MGGCCC--SSRKPHLHGTPVYYYCPPALEERESLTS-HNGTASTFTRGLLV-DFHLEAST 56
             MGGCCC  SSR+  +   P YYY P A EER  L+S HN T+S  + G++V D +LE S+
Sbjct:     1 MGGCCCCSSSRRADVDNGPAYYYYPRATEERVPLSSAHNRTSSAISTGVVVVDTNLETSS 60

Query:    57 PDTFRAPPLPLPYDVVFGCP 76
             PD +  PPLP P+DV  G P
Sbjct:    61 PDAYIPPPLPTPFDVPIGIP 80

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=IDA

GO:0006914 "autophagy" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.XIV.1345.1 hypothetical protein (182 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

No hit with probability above 80.00

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	147
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	92.36
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	88.74
2ect_A	78	Ring finger protein 126; metal binding protein, st	86.87
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	85.87
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	84.52
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	83.7
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	81.83
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	81.81
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	81.18

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=92.36  E-value=0.056  Score=36.81  Aligned_cols=17  Identities=24%  Similarity=0.405  Sum_probs=13.7

Q ss_pred             CCCCcccCCCcccCccc
Q 032109          130 AASEEEDTCPICLEGVV  146 (147)
Q Consensus       130 ~~sEeEDVCPtCLEEYt  146 (147)
                      ...++++.|+|||++|+
T Consensus        10 ~~~~~~~~C~IC~~~~~   26 (80)
T 2d8s_A           10 ITPSSQDICRICHCEGD   26 (80)
T ss_dssp             CCCTTSCCCSSSCCCCC
T ss_pred             CCCCCCCCCeEcCcccc
Confidence            34577888999999985

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=88.74  E-value=0.15  Score=32.88  Aligned_cols=16  Identities=19%  Similarity=0.542  Sum_probs=12.4

Q ss_pred             CCCcccCCCcccCccc
Q 032109          131 ASEEEDTCPICLEGVV  146 (147)
Q Consensus       131 ~sEeEDVCPtCLEEYt  146 (147)
                      ..++++.|+|||++|.
T Consensus        19 ~~~~~~~C~IC~~~~~   34 (75)
T 1x4j_A           19 HQSEQTLCVVCMCDFE   34 (75)
T ss_dssp             CSSSCCEETTTTEECC
T ss_pred             ccCCCCCCeECCcccC
Confidence            3466778999999874

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=86.87  E-value=0.26  Score=31.74  Aligned_cols=15  Identities=27%  Similarity=0.618  Sum_probs=12.2

Q ss_pred             CCcccCCCcccCccc
Q 032109          132 SEEEDTCPICLEGVV  146 (147)
Q Consensus       132 sEeEDVCPtCLEEYt  146 (147)
                      .++++.|||||++|.
T Consensus        12 ~~~~~~C~IC~~~~~   26 (78)
T 2ect_A           12 VGSGLECPVCKEDYA   26 (78)
T ss_dssp             SSSSCCCTTTTSCCC
T ss_pred             CCCCCCCeeCCcccc
Confidence            366778999999985

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.87  E-value=0.29  Score=31.18  Aligned_cols=14  Identities=29%  Similarity=0.771  Sum_probs=11.6

Q ss_pred             CcccCCCcccCccc
Q 032109          133 EEEDTCPICLEGVV  146 (147)
Q Consensus       133 EeEDVCPtCLEEYt  146 (147)
                      ++++.|+|||++|.
T Consensus        13 ~~~~~C~IC~~~~~   26 (74)
T 2ep4_A           13 NLHELCAVCLEDFK   26 (74)
T ss_dssp             CCSCBCSSSCCBCC
T ss_pred             CCCCCCcCCCcccC
Confidence            56677999999984

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=84.52  E-value=0.32  Score=30.09  Aligned_cols=16  Identities=31%  Similarity=0.881  Sum_probs=12.4

Q ss_pred             CCCcccCCCcccCccc
Q 032109          131 ASEEEDTCPICLEGVV  146 (147)
Q Consensus       131 ~sEeEDVCPtCLEEYt  146 (147)
                      ..+++..|||||+.|.
T Consensus        11 ~~~~~~~C~IC~~~~~   26 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYS   26 (69)
T ss_dssp             CTTCCCCCTTTCCCHH
T ss_pred             CCCCCCCCcccCcccc
Confidence            3466778999999874

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=83.70  E-value=0.42  Score=30.01  Aligned_cols=16  Identities=31%  Similarity=0.748  Sum_probs=12.2

Q ss_pred             CCCcccCCCcccCccc
Q 032109          131 ASEEEDTCPICLEGVV  146 (147)
Q Consensus       131 ~sEeEDVCPtCLEEYt  146 (147)
                      ..++++.|||||++|.
T Consensus        10 ~~~~~~~C~IC~~~~~   25 (69)
T 2kiz_A           10 EEDTEEKCTICLSILE   25 (69)
T ss_dssp             STTCCCSBTTTTBCCC
T ss_pred             cCCCCCCCeeCCcccc
Confidence            3456677999999874

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.83  E-value=0.47  Score=31.40  Aligned_cols=13  Identities=54%  Similarity=0.897  Sum_probs=9.4

Q ss_pred             cccCCCcccCccc
Q 032109          134 EEDTCPICLEGVV  146 (147)
Q Consensus       134 eEDVCPtCLEEYt  146 (147)
                      ++|.|+|||++++
T Consensus        14 ~~~~C~IC~~~~~   26 (81)
T 2ecl_A           14 ECDTCAICRVQVM   26 (81)
T ss_dssp             CCSCBTTTTBCTT
T ss_pred             CCCCCcccChhhh
Confidence            4566888888773

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=81.81  E-value=0.37  Score=32.44  Aligned_cols=16  Identities=44%  Similarity=0.775  Sum_probs=12.6

Q ss_pred             CCCcccCCCcccCccc
Q 032109          131 ASEEEDTCPICLEGVV  146 (147)
Q Consensus       131 ~sEeEDVCPtCLEEYt  146 (147)
                      ..++++.|||||++|.
T Consensus        36 ~~~~~~~C~IC~~~~~   51 (91)
T 2l0b_A           36 AVGQEMCCPICCSEYV   51 (91)
T ss_dssp             SSSSCSEETTTTEECC
T ss_pred             ccCCCCCCcccChhhc
Confidence            3467778999999874

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=81.18  E-value=0.91  Score=27.96  Aligned_cols=15  Identities=47%  Similarity=0.897  Sum_probs=12.1

Q ss_pred             CCcccCCCcccCccc
Q 032109          132 SEEEDTCPICLEGVV  146 (147)
Q Consensus       132 sEeEDVCPtCLEEYt  146 (147)
                      .+++..||||++.+.
T Consensus        17 ~~~~~~C~IC~~~~~   31 (63)
T 2ysj_A           17 LQEEVICPICLDILQ   31 (63)
T ss_dssp             CCCCCBCTTTCSBCS
T ss_pred             CccCCCCCcCCchhC
Confidence            367788999999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00