Citrus Sinensis ID: 032143

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLDSLQLL
cccccccccEEEEEEEcccccEEEEEEEEEcccccEEEEEEEEccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEccccEEEEEEEEccEEEEcccccccEEEEEcccccccccccccccccccc
ccccccccEEEEEEEcEcccccccEEEEEEEccccEEEEEEEEccccEEcEEEEEccccccccccccccEcccccccccccccccccccEccccEEccccEEEEEEEEccccccccccccccEEEEEccccccccccccccHHccc
METGATKATVKAVALISGatsvkgslhfvqgpngvthvkgkitglkpglhgfhihalgdttngcnstgphfnplkkdhgapsdnerhtgdlgnivagpdgvaevsiadrmiplsgqhsilgravvvhadpddlgkvsgtldslqll
metgatkatVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPddlgkvsgtldslqll
METGatkatvkavaLISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLDSLQLL
*********VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGC****************************NIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHA******************
*************ALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDL**VS********L
*********VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLDSLQLL
*****TKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPD*L*************
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiii
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METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLDSLQLL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query146 2.2.26 [Sep-21-2011]
O49044156 Superoxide dismutase [Cu- N/A no 0.863 0.807 0.809 1e-54
Q9FK60164 Superoxide dismutase [Cu- yes no 0.897 0.798 0.687 9e-48
P28757152 Superoxide dismutase [Cu- yes no 0.863 0.828 0.682 4e-45
P24669154 Superoxide dismutase [Cu- N/A no 0.863 0.818 0.690 7e-45
P11428151 Superoxide dismutase [Cu- N/A no 0.856 0.827 0.698 2e-44
Q0DRV6152 Superoxide dismutase [Cu- no no 0.863 0.828 0.666 2e-43
A2XGP6152 Superoxide dismutase [Cu- N/A no 0.863 0.828 0.666 2e-43
P23345152 Superoxide dismutase [Cu- N/A no 0.863 0.828 0.650 2e-43
P23346152 Superoxide dismutase [Cu- N/A no 0.863 0.828 0.650 2e-43
O22668152 Superoxide dismutase [Cu- N/A no 0.863 0.828 0.658 4e-43
>sp|O49044|SODC2_MESCR Superoxide dismutase [Cu-Zn] 2 OS=Mesembryanthemum crystallinum GN=SODCC.2 PE=2 SV=1 Back     alignment and function desciption
 Score =  211 bits (536), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/126 (80%), Positives = 111/126 (88%)

Query: 10  VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGP 69
           +KAVA+I+G  +VKGSL F+Q   GVTHVKG+ITGL PGLHGFHIHALGDTTNGCNSTGP
Sbjct: 4   IKAVAVINGNNNVKGSLQFIQDSTGVTHVKGRITGLTPGLHGFHIHALGDTTNGCNSTGP 63

Query: 70  HFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 129
           HFNPLKKDHGAP D ERH GDLGN+VAG DGVAEVS+ D  IPLSGQHSILGRAVVVHAD
Sbjct: 64  HFNPLKKDHGAPFDTERHAGDLGNVVAGADGVAEVSVRDTQIPLSGQHSILGRAVVVHAD 123

Query: 130 PDDLGK 135
            DDLG+
Sbjct: 124 QDDLGR 129
Destroys radicals which are normally produced within the cells and which are toxic to biological systems.
Mesembryanthemum crystallinum (taxid: 3544)
EC: 1EC: .EC: 1EC: 5EC: .EC: 1EC: .EC: 1
>sp|Q9FK60|SODC3_ARATH Superoxide dismutase [Cu-Zn] 3 OS=Arabidopsis thaliana GN=CSD3 PE=1 SV=1 Back     alignment and function description
>sp|P28757|SODC2_ORYSJ Superoxide dismutase [Cu-Zn] 2 OS=Oryza sativa subsp. japonica GN=SODCC2 PE=1 SV=2 Back     alignment and function description
>sp|P24669|SODC_PINSY Superoxide dismutase [Cu-Zn] OS=Pinus sylvestris GN=SODCC PE=2 SV=1 Back     alignment and function description
>sp|P11428|SODC2_MAIZE Superoxide dismutase [Cu-Zn] 2 OS=Zea mays GN=SODCC.1 PE=2 SV=2 Back     alignment and function description
>sp|Q0DRV6|SODC1_ORYSJ Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. japonica GN=SODCC1 PE=1 SV=1 Back     alignment and function description
>sp|A2XGP6|SODC1_ORYSI Superoxide dismutase [Cu-Zn] 1 OS=Oryza sativa subsp. indica GN=SODCC1 PE=2 SV=2 Back     alignment and function description
>sp|P23345|SODC4_MAIZE Superoxide dismutase [Cu-Zn] 4A OS=Zea mays GN=SODCC.3 PE=2 SV=2 Back     alignment and function description
>sp|P23346|SODC5_MAIZE Superoxide dismutase [Cu-Zn] 4AP OS=Zea mays GN=SODCC.2 PE=2 SV=2 Back     alignment and function description
>sp|O22668|SODC_PANGI Superoxide dismutase [Cu-Zn] OS=Panax ginseng GN=SODCC PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
186886514161 extracellular Cu/Zn superoxide dismutase 0.917 0.832 0.844 1e-58
301322852161 cytosolic copper/zinc-superoxide dismuta 0.910 0.826 0.860 9e-58
345106300152 cytosolic copper/zinc-superoxide dismuta 0.910 0.875 0.852 2e-57
301322842161 cytosolic copper/zinc-superoxide dismuta 0.910 0.826 0.852 2e-57
13274154158 putative CuZn-superoxide dismutase [Popu 0.869 0.803 0.850 6e-56
224123758158 predicted protein [Populus trichocarpa] 0.869 0.803 0.842 3e-55
224146003158 predicted protein [Populus trichocarpa] 0.869 0.803 0.834 3e-55
15131679158 putative CuZn-superoxide dismutase [Popu 0.869 0.803 0.834 7e-55
225441597156 PREDICTED: superoxide dismutase [Cu-Zn] 0.869 0.814 0.826 4e-54
357497317161 Superoxide dismutase [Medicago truncatul 0.910 0.826 0.816 8e-54
>gi|186886514|gb|ACC93639.1| extracellular Cu/Zn superoxide dismutase [Gossypium hirsutum] Back     alignment and taxonomy information
 Score =  230 bits (587), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 114/135 (84%), Positives = 123/135 (91%), Gaps = 1/135 (0%)

Query: 1   METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDT 60
           ME G +KAT+KAVALI+G T+V+G +HF Q PNG+THV+GKITGL PGLHGFHIHALGDT
Sbjct: 1   MECG-SKATLKAVALITGDTNVRGFIHFTQIPNGITHVQGKITGLSPGLHGFHIHALGDT 59

Query: 61  TNGCNSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSIL 120
           TNGCNSTGPHFNPLKKDHGAPSD ERH GDLGNI+AGPDGVAEVSI D  IPLSGQHSIL
Sbjct: 60  TNGCNSTGPHFNPLKKDHGAPSDGERHAGDLGNIIAGPDGVAEVSIKDWQIPLSGQHSIL 119

Query: 121 GRAVVVHADPDDLGK 135
           GRAVVVHADPDDLGK
Sbjct: 120 GRAVVVHADPDDLGK 134

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|301322852|gb|ADK70242.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] Back     alignment and taxonomy information
>gi|345106300|gb|AEN71835.1| cytosolic copper/zinc-superoxide dismutase variant 1 [Dimocarpus longan] Back     alignment and taxonomy information
>gi|301322842|gb|ADK70237.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|301322844|gb|ADK70238.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|301322846|gb|ADK70239.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|301322848|gb|ADK70240.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|301322850|gb|ADK70241.1| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] gi|345018984|gb|ADG26762.2| cytosolic copper/zinc-superoxide dismutase [Dimocarpus longan] Back     alignment and taxonomy information
>gi|13274154|emb|CAC33847.1| putative CuZn-superoxide dismutase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|224123758|ref|XP_002319157.1| predicted protein [Populus trichocarpa] gi|222857533|gb|EEE95080.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224146003|ref|XP_002325843.1| predicted protein [Populus trichocarpa] gi|222862718|gb|EEF00225.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|15131679|emb|CAC33846.2| putative CuZn-superoxide dismutase [Populus tremula x Populus tremuloides] Back     alignment and taxonomy information
>gi|225441597|ref|XP_002281571.1| PREDICTED: superoxide dismutase [Cu-Zn] 2 isoform 1 [Vitis vinifera] gi|297739768|emb|CBI29950.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|357497317|ref|XP_003618947.1| Superoxide dismutase [Medicago truncatula] gi|355493962|gb|AES75165.1| Superoxide dismutase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query146
TAIR|locus:2172324164 CSD3 "AT5G18100" [Arabidopsis 0.828 0.737 0.710 9.1e-45
UNIPROTKB|Q0DTX5162 Os03g0219200 "Superoxide dismu 0.828 0.746 0.704 6.4e-44
UNIPROTKB|P28757152 SODCC2 "Superoxide dismutase [ 0.828 0.796 0.669 2.2e-43
UNIPROTKB|Q0DRV6152 SODCC1 "Superoxide dismutase [ 0.828 0.796 0.661 5.7e-43
TAIR|locus:2025595152 CSD1 "copper/zinc superoxide d 0.828 0.796 0.644 4.2e-40
UNIPROTKB|P33431153 SOD1 "Superoxide dismutase [Cu 0.828 0.790 0.611 8.9e-38
UNIPROTKB|Q8HXP8154 SOD1 "Superoxide dismutase [Cu 0.828 0.785 0.590 5.7e-36
UNIPROTKB|Q8HXP9154 SOD1 "Superoxide dismutase [Cu 0.828 0.785 0.590 5.7e-36
UNIPROTKB|Q8HXQ0154 SOD1 "Superoxide dismutase [Cu 0.828 0.785 0.581 5.7e-36
UNIPROTKB|Q8HXQ1154 SOD1 "Superoxide dismutase [Cu 0.828 0.785 0.581 5.7e-36
TAIR|locus:2172324 CSD3 "AT5G18100" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
 Identities = 86/121 (71%), Positives = 100/121 (82%)

Query:    15 LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPL 74
             LI+G  +V+G L FVQ  +G THV GKI+GL PG HGFHIH+ GDTTNGC STGPHFNPL
Sbjct:    13 LIAGDNNVRGCLQFVQDISGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPL 72

Query:    75 KKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLG 134
              + HG P++ ERH GDLGNI+AG +GVAE+ I D+ IPLSGQ+SILGRAVVVHADPDDLG
Sbjct:    73 NRVHGPPNEEERHAGDLGNILAGSNGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLG 132

Query:   135 K 135
             K
Sbjct:   133 K 133
GO:0004784 "superoxide dismutase activity" evidence=IEA;ISS;IBA
GO:0005507 "copper ion binding" evidence=IBA
GO:0005576 "extracellular region" evidence=IBA
GO:0008270 "zinc ion binding" evidence=IBA
GO:0009507 "chloroplast" evidence=ISM
GO:0019430 "removal of superoxide radicals" evidence=IC;IBA
GO:0046872 "metal ion binding" evidence=IEA
GO:0055114 "oxidation-reduction process" evidence=IBA
GO:0005773 "vacuole" evidence=IDA
GO:0005777 "peroxisome" evidence=NAS;IDA
GO:0071472 "cellular response to salt stress" evidence=IEP
GO:0006979 "response to oxidative stress" evidence=IEP;TAS
GO:0071457 "cellular response to ozone" evidence=IEP
GO:0071484 "cellular response to light intensity" evidence=IEP
GO:0071486 "cellular response to high light intensity" evidence=IEP
GO:0071493 "cellular response to UV-B" evidence=IEP
UNIPROTKB|Q0DTX5 Os03g0219200 "Superoxide dismutase [Cu-Zn]" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|P28757 SODCC2 "Superoxide dismutase [Cu-Zn] 2" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
UNIPROTKB|Q0DRV6 SODCC1 "Superoxide dismutase [Cu-Zn] 1" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2025595 CSD1 "copper/zinc superoxide dismutase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|P33431 SOD1 "Superoxide dismutase [Cu-Zn]" [Cavia porcellus (taxid:10141)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP8 SOD1 "Superoxide dismutase [Cu-Zn]" [Callithrix jacchus (taxid:9483)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXP9 SOD1 "Superoxide dismutase [Cu-Zn]" [Cebus apella (taxid:9515)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXQ0 SOD1 "Superoxide dismutase [Cu-Zn]" [Macaca mulatta (taxid:9544)] Back     alignment and assigned GO terms
UNIPROTKB|Q8HXQ1 SOD1 "Superoxide dismutase [Cu-Zn]" [Macaca fascicularis (taxid:9541)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P33431SODC_CAVPO1, ., 1, 5, ., 1, ., 10.6160.85610.8169yesno
O22668SODC_PANGI1, ., 1, 5, ., 1, ., 10.65870.86300.8289N/Ano
P28757SODC2_ORYSJ1, ., 1, 5, ., 1, ., 10.68250.86300.8289yesno
P08228SODC_MOUSE1, ., 1, 5, ., 1, ., 10.59050.86300.8181yesno
O65174SODC_ZANAE1, ., 1, 5, ., 1, ., 10.61110.86300.8289N/Ano
O04996SODC_SOLCS1, ., 1, 5, ., 1, ., 10.63770.86300.8235N/Ano
Q02610SODC_PEA1, ., 1, 5, ., 1, ., 10.66660.86300.8289N/Ano
Q42612SODC2_BRAJU1, ., 1, 5, ., 1, ., 10.640.85610.8223N/Ano
P14830SODC1_SOLLC1, ., 1, 5, ., 1, ., 10.64280.86300.8289N/Ano
P22233SODC_SPIOL1, ., 1, 5, ., 1, ., 10.6320.85610.8223N/Ano
Q42611SODC1_BRAJU1, ., 1, 5, ., 1, ., 10.640.85610.8223N/Ano
P23346SODC5_MAIZE1, ., 1, 5, ., 1, ., 10.65070.86300.8289N/Ano
P23345SODC4_MAIZE1, ., 1, 5, ., 1, ., 10.65070.86300.8289N/Ano
Q8HXQ2SODC_MACFU1, ., 1, 5, ., 1, ., 10.58260.86300.8181N/Ano
Q8WNN6SODC_CANFA1, ., 1, 5, ., 1, ., 10.58730.86300.8235yesno
Q8HXQ3SODC_HYLLA1, ., 1, 5, ., 1, ., 10.58260.86300.8181N/Ano
Q8HXQ0SODC_MACMU1, ., 1, 5, ., 1, ., 10.58260.86300.8181yesno
Q9SQL5SODC_ANACO1, ., 1, 5, ., 1, ., 10.65870.86300.8289N/Ano
O49073SODC_PAUKA1, ., 1, 5, ., 1, ., 10.64280.86300.8289N/Ano
Q8HXQ1SODC_MACFA1, ., 1, 5, ., 1, ., 10.58260.86300.8181N/Ano
P93258SODC1_MESCR1, ., 1, 5, ., 1, ., 10.63490.86300.8289N/Ano
P11428SODC2_MAIZE1, ., 1, 5, ., 1, ., 10.69840.85610.8278N/Ano
O65768SODC_CARPA1, ., 1, 5, ., 1, ., 10.65070.86300.8289N/Ano
P27082SODC_NICPL1, ., 1, 5, ., 1, ., 10.63490.86300.8289N/Ano
Q9FK60SODC3_ARATH1, ., 1, 5, ., 1, ., 10.68700.89720.7987yesno
Q8L5E0ALL5B_OLEEU1, ., 1, 5, ., 1, ., 10.63490.86300.8289N/Ano
Q8HXP9SODC_CEBAP1, ., 1, 5, ., 1, ., 10.59050.86300.8181N/Ano
Q8HXP8SODC_CALJA1, ., 1, 5, ., 1, ., 10.59050.86300.8181yesno
A2XGP6SODC1_ORYSI1, ., 1, 5, ., 1, ., 10.66660.86300.8289N/Ano
Q43779SODC2_SOLLC1, ., 1, 5, ., 1, ., 10.64280.86300.8289N/Ano
P09678SODC_BRAOC1, ., 1, 5, ., 1, ., 10.6320.85610.8223N/Ano
O49044SODC2_MESCR1, ., 1, 5, ., 1, ., 10.80950.86300.8076N/Ano
P07632SODC_RAT1, ., 1, 5, ., 1, ., 10.58260.86300.8181yesno
Q07796SODC_IPOBA1, ., 1, 5, ., 1, ., 10.64280.86300.8289N/Ano
P81926SODC_HALRO1, ., 1, 5, ., 1, ., 10.61410.85610.8223N/Ano
O22373SODC_CAPAN1, ., 1, 5, ., 1, ., 10.63490.86300.8289N/Ano
P11418SODC_PRIGL1, ., 1, 5, ., 1, ., 10.54810.91780.8815N/Ano
P24669SODC_PINSY1, ., 1, 5, ., 1, ., 10.69040.86300.8181N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
4th Layer1.15.1.10.991
3rd Layer1.15.10.976

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pg.C_LG_XIX0416
hypothetical protein; Destroys radicals which are normally produced within the cells and which are toxic to biological systems (By similarity) (158 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
PLN02642164 PLN02642, PLN02642, copper, zinc superoxide dismut 3e-55
PLN02386152 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] 2e-53
pfam00080140 pfam00080, Sod_Cu, Copper/zinc superoxide dismutas 4e-49
cd00305144 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc s 7e-47
COG2032179 COG2032, SodC, Cu/Zn superoxide dismutase [Inorgan 2e-22
PLN02957238 PLN02957, PLN02957, copper, zinc superoxide dismut 1e-14
PRK15388177 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Pr 3e-06
PRK10290173 PRK10290, PRK10290, superoxide dismutase; Provisio 2e-05
>gnl|CDD|178248 PLN02642, PLN02642, copper, zinc superoxide dismutase Back     alignment and domain information 
 Score =  170 bits (431), Expect = 3e-55
 Identities = 91/131 (69%), Positives = 106/131 (80%)

Query: 5   ATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGC 64
           A +  ++AVALI+G  +V+G L FVQ   G THV GKI+GL PG HGFHIH+ GDTTNGC
Sbjct: 3   APRGNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGC 62

Query: 65  NSTGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAV 124
            STGPHFNPL + HG P++ ERH GDLGNI+AG DGVAE+ I D+ IPLSGQ+SILGRAV
Sbjct: 63  ISTGPHFNPLNRVHGPPNEEERHAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAV 122

Query: 125 VVHADPDDLGK 135
           VVHADPDDLGK
Sbjct: 123 VVHADPDDLGK 133

Length = 164
>gnl|CDD|166027 PLN02386, PLN02386, superoxide dismutase [Cu-Zn] Back     alignment and domain information
>gnl|CDD|215700 pfam00080, Sod_Cu, Copper/zinc superoxide dismutase (SODC) Back     alignment and domain information
>gnl|CDD|238186 cd00305, Cu-Zn_Superoxide_Dismutase, Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>gnl|CDD|224943 COG2032, SodC, Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase Back     alignment and domain information
>gnl|CDD|185286 PRK15388, PRK15388, Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information
>gnl|CDD|182357 PRK10290, PRK10290, superoxide dismutase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 146
PLN02642164 copper, zinc superoxide dismutase 100.0
PLN02386152 superoxide dismutase [Cu-Zn] 100.0
cd00305144 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide 100.0
KOG0441154 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Ino 100.0
PRK15388177 Cu/Zn superoxide dismutase; Provisional 100.0
PRK10290173 superoxide dismutase; Provisional 100.0
PF00080142 Sod_Cu: Copper/zinc superoxide dismutase (SODC); I 100.0
PLN02957238 copper, zinc superoxide dismutase 100.0
COG2032179 SodC Cu/Zn superoxide dismutase [Inorganic ion tra 100.0
KOG4656247 consensus Copper chaperone for superoxide dismutas 100.0
PF07452119 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after 84.81
smart00754118 CHRD A domain in the BMP inhibitor chordin and in 82.26
>PLN02642 copper, zinc superoxide dismutase Back     alignment and domain information 
Probab=100.00  E-value=5e-47  Score=287.38  Aligned_cols=139  Identities=67%  Similarity=1.111  Sum_probs=130.8

Q ss_pred             CCccccccceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCC
Q 032143            1 METGATKATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGA   80 (146)
Q Consensus         1 ~~~~~~~~~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~   80 (146)
                      ||+|  +...+|+|+|++.+.++|+|+|+|..++.|+|+++|+||+||+|+|||||+|||+++|.|||+||||.++.|+.
T Consensus         1 ~~~~--~~~~~A~a~~~g~~~v~G~v~f~q~~~g~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~   78 (164)
T PLN02642          1 MEAP--RGNLRAVALIAGDNNVRGCLQFVQDIFGTTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGP   78 (164)
T ss_pred             CCcc--CCCeeEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCC
Confidence            6655  56788999999888899999999987667999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCc
Q 032143           81 PSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLD  141 (146)
Q Consensus        81 p~~~~~~~GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~  141 (146)
                      |++..||+||||||+++++|++++.++++.++|.++++|+|||||||+.+|||++++++.|
T Consensus        79 ~~~~~rH~GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~~~~~~s  139 (164)
T PLN02642         79 PNEEERHAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGKGGHKLS  139 (164)
T ss_pred             CCcCCCcccccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCcCccccc
Confidence            9999999999999999999999999999999999999999999999999999999987765

>PLN02386 superoxide dismutase [Cu-Zn] Back     alignment and domain information
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD) Back     alignment and domain information
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15388 Cu/Zn superoxide dismutase; Provisional Back     alignment and domain information
>PRK10290 superoxide dismutase; Provisional Back     alignment and domain information
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide [] Back     alignment and domain information
>PLN02957 copper, zinc superoxide dismutase Back     alignment and domain information
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins Back     alignment and domain information
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
2q2l_A152 Crystal Structure Of Superoxide Dismutase From P. A 6e-41
3gtv_A153 Human-Mouse Sod1 Chimera Length = 153 6e-36
1srd_A154 Three-Dimensional Structure Of Cu,Zn-Superoxide Dis 6e-36
3gtt_A153 Mouse Sod1 Length = 153 6e-36
3km1_A154 Zinc-Reconstituted Tomato Chloroplast Superoxide Di 7e-35
3mnd_A152 Crystallographic Analysis Of The Cystosolic CuZN SU 1e-34
1to4_A156 Structure Of The Cytosolic Cu,Zn Sod From S. Manson 2e-34
1fun_A153 Superoxide Dismutase Mutant With Lys 136 Replaced B 4e-34
1n19_A154 Structure Of The Hsod A4v Mutant Length = 154 4e-34
1n18_A154 Thermostable Mutant Of Human Superoxide Dismutase, 4e-34
1sos_A154 Atomic Structures Of Wild-type And Thermostable Mut 4e-34
1l3n_A153 The Solution Structure Of Reduced Dimeric Copper Zi 4e-34
1e9p_B151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 7e-34
2gbt_A153 C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 9e-34
1e9p_A151 Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angst 1e-33
3ltv_A153 Mouse-Human Sod1 Chimera Length = 153 1e-33
1hl4_A154 The Structure Of Apo Type Human Cu, Zn Superoxide D 1e-33
1hl5_A153 The Structure Of Holo Type Human Cu, Zn Superoxide 1e-33
4b3e_A154 Structure Of Copper-Zinc Superoxide Dismutase Compl 1e-33
1uxm_A153 A4v Mutant Of Human Sod1 Length = 153 1e-33
3gzq_A154 Human Sod1 A4v Metal-Free Variant Length = 154 1e-33
2c9s_A153 1.24 Angstroms Resolution Structure Of Zn-Zn Human 1e-33
1ozu_A153 Crystal Structure Of Familial Als Mutant S134n Of H 2e-33
1ptz_A153 Crystal Structure Of The Human Cu, Zn Superoxide Di 2e-33
1uxl_A153 I113t Mutant Of Human Sod1 Length = 153 3e-33
2wyt_A153 1.0 A Resolution Structure Of L38v Sod1 Mutant Leng 3e-33
2wyz_A153 L38v Sod1 Mutant Complexed With Ump Length = 153 3e-33
1e9o_A152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 3e-33
1e9q_A151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 4e-33
3gzp_A153 Human Sod1 G93a Metal-Free Variant Length = 153 5e-33
3gzo_A154 Human Sod1 G93a Variant Length = 154 5e-33
1ba9_A153 The Solution Structure Of Reduced Monomeric Superox 5e-33
1dsw_A153 The Solution Structure Of A Monomeric, Reduced Form 5e-33
2zky_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 5e-33
1mfm_A153 Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC 5e-33
3ecw_A153 Crystal Structure Of The Als-Related Pathological M 5e-33
2wko_F154 Structure Of Metal Loaded Pathogenic Sod1 Mutant G9 5e-33
1oez_W153 Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismu 6e-33
3h2q_A153 Human Sod1 H80r Variant, P21 Crystal Form Length = 6e-33
1xso_A150 Three-Dimensional Structure Of Xenopus Laevis Cu,Zn 6e-33
3qqd_A154 Human Sod1 H80r Variant, P212121 Crystal Form Lengt 7e-33
1e9o_B152 Crystal Structure Of Bovine Sod - 1 Of 3 Length = 1 8e-33
2vr7_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 8e-33
2vr6_A153 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 8e-33
1azv_A153 Familial Als Mutant G37r Cuznsod (Human) Length = 1 8e-33
1e9q_B151 Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Leng 9e-33
1cb4_A151 Crystal Structure Of Copper, Zinc Superoxide Dismut 9e-33
2vr8_A154 Crystal Structure Of G85r Als Mutant Of Human Cu,Zn 9e-33
2zkw_A159 Crystal Structure Of Human Cu-Zn Superoxide Dismuta 9e-33
3cqq_A153 Human Sod1 G85r Variant, Structure Ii Length = 153 9e-33
4a7g_A153 Structure Of Human I113t Sod1 Mutant Complexed With 1e-32
2gbu_A153 C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase 1e-32
3sod_O152 Changes In Crystallographic Structure And Thermosta 1e-32
2xjk_A153 Monomeric Human Cu,Zn Superoxide Dismutase Length = 1e-32
1q0e_A152 Atomic Resolution (1.15 ) Crystal Structure Of Bovi 1e-32
1cob_A151 Crystal Structure Solution And Refinement Of The Se 1e-32
2r27_A154 Constitutively Zinc-Deficient Mutant Of Human Super 1e-32
1p1v_A153 Crystal Structure Of Fals-Associated Human Copper-Z 1e-32
3h2p_A153 Human Sod1 D124v Variant Length = 153 1e-32
3gqf_A153 Structural And Biophysical Properties Of The Pathog 2e-32
2nnx_A154 Crystal Structure Of The H46r, H48q Double Mutant O 2e-32
3f7k_A152 X-Ray Crystal Structure Of An Alvinella Pompejana C 4e-32
1sda_O152 Crystal Structure Of Peroxynitrite-Modified Bovine 4e-32
4bcy_A153 Monomeric Human Cu,zn Superoxide Dismutase, Mutatio 7e-32
2xjl_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 3e-30
3kbe_A157 Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Le 5e-30
3hff_A153 Monomeric Human Cu,Zn Superoxide Dismutase Without 2e-29
2e46_A157 Crystal Structure Analysis Of The Clock Protein Ea4 2e-28
2e47_A156 Crystal Structure Analysis Of The Clock Protein Ea4 2e-28
3l9y_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 3e-28
3l9e_A154 Crystal Structures Of Holo And Cu-Deficient CuZNSOD 4e-28
1f1g_A154 Crystal Structure Of Yeast Cuznsod Exposed To Nitri 2e-26
1sdy_A153 Structure Solution And Molecular Dynamics Refinemen 3e-26
1f1a_A154 Crystal Structure Of Yeast H48q Cuznsod Fals Mutant 9e-26
1f18_A154 Crystal Structure Of Yeast Copper-Zinc Superoxide D 1e-25
1jk9_A153 Heterodimer Between H48f-Ysod1 And Yccs Length = 15 1e-25
1f1d_A154 Crystal Structure Of Yeast H46c Cuznsod Mutant Leng 2e-25
1b4t_A153 H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPE 2e-25
3ce1_A168 Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE 7e-24
1do5_A154 Human Copper Chaperone For Superoxide Dismutase Dom 6e-23
2jlp_A222 Crystal Structure Of Human Extracellular Copper-Zin 1e-13
4bcz_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 1e-12
4bd4_A110 Monomeric Human Cu,zn Superoxide Dismutase, Loops I 7e-12
1xtm_B175 Crystal Structure Of The Double Mutant Y88h-p104h O 2e-06
1xtl_B175 Crystal Structure Of P104h Mutant Of Sod-Like Prote 5e-06
1ibd_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 3e-05
1bzo_A151 Three-Dimensional Structure Of Prokaryotic Cu,Zn Su 3e-05
1ib5_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 3e-05
1ibh_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 4e-05
1oaj_A151 Active Site Copper And Zinc Ions Modulate The Quate 4e-05
1u3n_A162 A Sod-Like Protein From B. Subtilis, Unstructured I 4e-05
1ibb_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 4e-05
1ibf_A151 X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant 6e-05
1s4i_B175 Crystal Structure Of A Sod-like Protein From Bacill 6e-05
1yai_A151 X-Ray Structure Of A Bacterial Copper,Zinc Superoxi 7e-05
2wwn_A169 Yersinia Pseudotuberculosis Superoxide Dismutase C 9e-05
1oal_A151 Active Site Copper And Zinc Ions Modulate The Quate 1e-04
2aqm_A154 CuZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS Len 4e-04
1eqw_A156 Crystal Structure Of Salmonella Typhimurium Cu,Zn S 4e-04
>pdb|2Q2L|A Chain A, Crystal Structure Of Superoxide Dismutase From P. Atrosanguina Length = 152 Back     alignment and structure 
Iteration: 1

 Score =  162 bits (410), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 79/121 (65%), Positives = 93/121 (76%)
Query: 15  LISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPL 74
           ++S +  V G++ F Q  +G T V G I+GLKPGLHGFH+HALGDTTNGC STGPHFNP 
Sbjct: 7   VLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGPHFNPA 66
Query: 75  KKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLG 134
            K+HG+P D  RH GDLGNI  G DG A  +I D+ IPL+G HSI+GRAVVVHADPDDLG
Sbjct: 67  GKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHADPDDLG 126
Query: 135 K 135
           K
Sbjct: 127 K 127
>pdb|3GTV|A Chain A, Human-Mouse Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|1SRD|A Chain A, Three-Dimensional Structure Of Cu,Zn-Superoxide Dismutase From Spinach At 2.0 Angstroms Resolution Length = 154 Back     alignment and structure
>pdb|3GTT|A Chain A, Mouse Sod1 Length = 153 Back     alignment and structure
>pdb|3KM1|A Chain A, Zinc-Reconstituted Tomato Chloroplast Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|3MND|A Chain A, Crystallographic Analysis Of The Cystosolic CuZN SUPEROXIDE DISMUTASE From Taenia Solium Length = 152 Back     alignment and structure
>pdb|1TO4|A Chain A, Structure Of The Cytosolic Cu,Zn Sod From S. Mansoni Length = 156 Back     alignment and structure
>pdb|1FUN|A Chain A, Superoxide Dismutase Mutant With Lys 136 Replaced By Glu, Cys 6 Replaced By Ala And Cys 111 Replaced By Ser (K136e, C6a, C111s) Length = 153 Back     alignment and structure
>pdb|1N19|A Chain A, Structure Of The Hsod A4v Mutant Length = 154 Back     alignment and structure
>pdb|1N18|A Chain A, Thermostable Mutant Of Human Superoxide Dismutase, C6a, C111s Length = 154 Back     alignment and structure
>pdb|1SOS|A Chain A, Atomic Structures Of Wild-type And Thermostable Mutant Recombinant Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1L3N|A Chain A, The Solution Structure Of Reduced Dimeric Copper Zinc Sod: The Structural Effects Of Dimerization Length = 153 Back     alignment and structure
>pdb|1E9P|B Chain B, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|2GBT|A Chain A, C6aC111A CUZN SUPEROXIDE DISMUTASE Length = 153 Back     alignment and structure
>pdb|1E9P|A Chain A, Crystal Structure Of Bovine Cu, Zn Sod To 1.7 Angstrom (3 Of 3) Length = 151 Back     alignment and structure
>pdb|3LTV|A Chain A, Mouse-Human Sod1 Chimera Length = 153 Back     alignment and structure
>pdb|1HL4|A Chain A, The Structure Of Apo Type Human Cu, Zn Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|1HL5|A Chain A, The Structure Of Holo Type Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|4B3E|A Chain A, Structure Of Copper-Zinc Superoxide Dismutase Complexed With Bicarbonate. Length = 154 Back     alignment and structure
>pdb|1UXM|A Chain A, A4v Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|3GZQ|A Chain A, Human Sod1 A4v Metal-Free Variant Length = 154 Back     alignment and structure
>pdb|2C9S|A Chain A, 1.24 Angstroms Resolution Structure Of Zn-Zn Human Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1OZU|A Chain A, Crystal Structure Of Familial Als Mutant S134n Of Human Cu, Zn Superoxide Dismutase (Cuznsod) To 1.3a Resolution Length = 153 Back     alignment and structure
>pdb|1PTZ|A Chain A, Crystal Structure Of The Human Cu, Zn Superoxide Dismutase, Familial Amyotrophic Lateral Sclerosis (Fals) Mutant H43r Length = 153 Back     alignment and structure
>pdb|1UXL|A Chain A, I113t Mutant Of Human Sod1 Length = 153 Back     alignment and structure
>pdb|2WYT|A Chain A, 1.0 A Resolution Structure Of L38v Sod1 Mutant Length = 153 Back     alignment and structure
>pdb|2WYZ|A Chain A, L38v Sod1 Mutant Complexed With Ump Length = 153 Back     alignment and structure
>pdb|1E9O|A Chain A, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|1E9Q|A Chain A, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|3GZP|A Chain A, Human Sod1 G93a Metal-Free Variant Length = 153 Back     alignment and structure
>pdb|3GZO|A Chain A, Human Sod1 G93a Variant Length = 154 Back     alignment and structure
>pdb|1BA9|A Chain A, The Solution Structure Of Reduced Monomeric Superoxide Dismutase, Nmr, 36 Structures Length = 153 Back     alignment and structure
>pdb|1DSW|A Chain A, The Solution Structure Of A Monomeric, Reduced Form Of Human Copper, Zinc Superoxide Dismutase Bearing The Same Charge As The Native Protein Length = 153 Back     alignment and structure
>pdb|2ZKY|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G93a Length = 159 Back     alignment and structure
>pdb|1MFM|A Chain A, Monomeric Human Sod Mutant F50eG51EE133Q AT ATOMIC Resolution Length = 153 Back     alignment and structure
>pdb|3ECW|A Chain A, Crystal Structure Of The Als-Related Pathological Mutant T54r Of Human Apo Cu,Zn Superoxide Dismutase (Sod1) Length = 153 Back     alignment and structure
>pdb|2WKO|F Chain F, Structure Of Metal Loaded Pathogenic Sod1 Mutant G93a Length = 154 Back     alignment and structure
>pdb|1OEZ|W Chain W, Zn His46arg Mutant Of Human Cu, Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3H2Q|A Chain A, Human Sod1 H80r Variant, P21 Crystal Form Length = 153 Back     alignment and structure
>pdb|1XSO|A Chain A, Three-Dimensional Structure Of Xenopus Laevis Cu,Zn Superoxide Dismutase B Determined By X-Ray Crystallography At 1.5 Angstroms Resolution Length = 150 Back     alignment and structure
>pdb|3QQD|A Chain A, Human Sod1 H80r Variant, P212121 Crystal Form Length = 154 Back     alignment and structure
>pdb|1E9O|B Chain B, Crystal Structure Of Bovine Sod - 1 Of 3 Length = 152 Back     alignment and structure
>pdb|2VR7|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.58 A Resolution Length = 154 Back     alignment and structure
>pdb|2VR6|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.3 A Resolution Length = 153 Back     alignment and structure
>pdb|1AZV|A Chain A, Familial Als Mutant G37r Cuznsod (Human) Length = 153 Back     alignment and structure
>pdb|1E9Q|B Chain B, Crystal Structure Of Bovine Cu Zn Sod-(1 Of 3) Length = 151 Back     alignment and structure
>pdb|1CB4|A Chain A, Crystal Structure Of Copper, Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|2VR8|A Chain A, Crystal Structure Of G85r Als Mutant Of Human Cu,Zn Superoxide Dismutase (Cuznsod) At 1.36 A Resolution Length = 154 Back     alignment and structure
>pdb|2ZKW|A Chain A, Crystal Structure Of Human Cu-Zn Superoxide Dismutase Mutant G85r In Space Group P21 Length = 159 Back     alignment and structure
>pdb|3CQQ|A Chain A, Human Sod1 G85r Variant, Structure Ii Length = 153 Back     alignment and structure
>pdb|4A7G|A Chain A, Structure Of Human I113t Sod1 Mutant Complexed With 4- Methylpiperazin-1-Yl)quinazoline In The P21 Space Group Length = 153 Back     alignment and structure
>pdb|2GBU|A Chain A, C6a/c111a/c57a/c146a Apo Cuzn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|3SOD|O Chain O, Changes In Crystallographic Structure And Thermostability Of A Cu,Zn Superoxide Dismutase Mutant Resulting From The Removal Of Buried Cysteine Length = 152 Back     alignment and structure
>pdb|2XJK|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1Q0E|A Chain A, Atomic Resolution (1.15 ) Crystal Structure Of Bovine Copper, Zinc Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|1COB|A Chain A, Crystal Structure Solution And Refinement Of The Semisynthetic Cobalt Substituted Bovine Erythrocyte Enzyme Superoxide Dismutase At 2.0 Angstroms Resolution Length = 151 Back     alignment and structure
>pdb|2R27|A Chain A, Constitutively Zinc-Deficient Mutant Of Human Superoxide Dismutase (Sod), C6a, H80s, H83s, C111s Length = 154 Back     alignment and structure
>pdb|1P1V|A Chain A, Crystal Structure Of Fals-Associated Human Copper-Zinc Superoxide Dismutase (Cuznsod) Mutant D125h To 1.4a Length = 153 Back     alignment and structure
>pdb|3H2P|A Chain A, Human Sod1 D124v Variant Length = 153 Back     alignment and structure
>pdb|3GQF|A Chain A, Structural And Biophysical Properties Of The Pathogenic Sod1 Variant H46rH48Q Length = 153 Back     alignment and structure
>pdb|2NNX|A Chain A, Crystal Structure Of The H46r, H48q Double Mutant Of Human [cu-Zn] Superoxide Dismutase Length = 154 Back     alignment and structure
>pdb|3F7K|A Chain A, X-Ray Crystal Structure Of An Alvinella Pompejana Cu,Zn Superoxide Dismutase- Hydrogen Peroxide Complex Length = 152 Back     alignment and structure
>pdb|1SDA|O Chain O, Crystal Structure Of Peroxynitrite-Modified Bovine Cu,Zn Superoxide Dismutase Length = 152 Back     alignment and structure
>pdb|4BCY|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Mutation H43f Length = 153 Back     alignment and structure
>pdb|2XJL|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Cu Ligands Length = 153 Back     alignment and structure
>pdb|3KBE|A Chain A, Metal-Free C. Elegans Cu,Zn Superoxide Dismutase Length = 157 Back     alignment and structure
>pdb|3HFF|A Chain A, Monomeric Human Cu,Zn Superoxide Dismutase Without Zn Ligands Length = 153 Back     alignment and structure
>pdb|2E46|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 Length = 157 Back     alignment and structure
>pdb|2E47|A Chain A, Crystal Structure Analysis Of The Clock Protein Ea4 (Glycosylation Form) Length = 156 Back     alignment and structure
>pdb|3L9Y|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM The Silkworm Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|3L9E|A Chain A, Crystal Structures Of Holo And Cu-Deficient CuZNSOD FROM THE SILKWORM Bombyx Mori And The Implications In Amyotrophic Lateral Sclerosis Length = 154 Back     alignment and structure
>pdb|1F1G|A Chain A, Crystal Structure Of Yeast Cuznsod Exposed To Nitric Oxide Length = 154 Back     alignment and structure
>pdb|1SDY|A Chain A, Structure Solution And Molecular Dynamics Refinement Of The Yeast Cu,Zn Enzyme Superoxide Dismutase Length = 153 Back     alignment and structure
>pdb|1F1A|A Chain A, Crystal Structure Of Yeast H48q Cuznsod Fals Mutant Analog Length = 154 Back     alignment and structure
>pdb|1F18|A Chain A, Crystal Structure Of Yeast Copper-Zinc Superoxide Dismutase Mutant Gly85arg Length = 154 Back     alignment and structure
>pdb|1JK9|A Chain A, Heterodimer Between H48f-Ysod1 And Yccs Length = 153 Back     alignment and structure
>pdb|1F1D|A Chain A, Crystal Structure Of Yeast H46c Cuznsod Mutant Length = 154 Back     alignment and structure
>pdb|1B4T|A Chain A, H48c Yeast Cu(Ii)ZN SUPEROXIDE DISMUTASE ROOM TEMPERATURE (298k) Structure Length = 153 Back     alignment and structure
>pdb|3CE1|A Chain A, Crystal Structure Of The CuZN SUPEROXIDE DISMUTASE FROM Cryptococcus Liquefaciens Strain N6 Length = 168 Back     alignment and structure
>pdb|1DO5|A Chain A, Human Copper Chaperone For Superoxide Dismutase Domain Ii Length = 154 Back     alignment and structure
>pdb|2JLP|A Chain A, Crystal Structure Of Human Extracellular Copper-Zinc Superoxide Dismutase. Length = 222 Back     alignment and structure
>pdb|4BCZ|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form. Length = 110 Back     alignment and structure
>pdb|4BD4|A Chain A, Monomeric Human Cu,zn Superoxide Dismutase, Loops Iv And Vii Deleted, Apo Form, Mutant H43f Length = 110 Back     alignment and structure
>pdb|1XTM|B Chain B, Crystal Structure Of The Double Mutant Y88h-p104h Of A Sod-like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|1XTL|B Chain B, Crystal Structure Of P104h Mutant Of Sod-Like Protein From Bacillus Subtilis. Length = 175 Back     alignment and structure
>pdb|1IBD|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29a Length = 151 Back     alignment and structure
>pdb|1BZO|A Chain A, Three-Dimensional Structure Of Prokaryotic Cu,Zn Superoxide Dismutase From P.Leiognathi, Solved By X-Ray Crystallography Length = 151 Back     alignment and structure
>pdb|1IB5|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83y Length = 151 Back     alignment and structure
>pdb|1IBH|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant M41i Length = 151 Back     alignment and structure
>pdb|1OAJ|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|1U3N|A Chain A, A Sod-Like Protein From B. Subtilis, Unstructured In Solution, Becomes Ordered In The Crystal: Implications For Function And For Fibrillogenesis Length = 162 Back     alignment and structure
>pdb|1IBB|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant W83f Length = 151 Back     alignment and structure
>pdb|1IBF|A Chain A, X-Ray 3d Structure Of P.Leiognathi Cu,Zn Sod Mutant V29g Length = 151 Back     alignment and structure
>pdb|1S4I|B Chain B, Crystal Structure Of A Sod-like Protein From Bacillus Subtilis Length = 175 Back     alignment and structure
>pdb|1YAI|A Chain A, X-Ray Structure Of A Bacterial Copper,Zinc Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|2WWN|A Chain A, Yersinia Pseudotuberculosis Superoxide Dismutase C With Bound Azide Length = 169 Back     alignment and structure
>pdb|1OAL|A Chain A, Active Site Copper And Zinc Ions Modulate The Quaternary Structure Of Prokaryotic Cu,Zn Superoxide Dismutase Length = 151 Back     alignment and structure
>pdb|2AQM|A Chain A, CuZN SUPEROXIDE DISMUTASE FROM BRUCELLA ABORTUS Length = 154 Back     alignment and structure
>pdb|1EQW|A Chain A, Crystal Structure Of Salmonella Typhimurium Cu,Zn Superoxide Dismutase Length = 156 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query146
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 1e-58
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 2e-58
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 2e-58
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 4e-56
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 4e-56
1do5_A154 Human copper chaperone for superoxide dismutase do 7e-56
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 8e-56
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 3e-55
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 1e-54
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 4e-54
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 1e-53
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 3e-52
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 6e-49
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 7e-47
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 2e-46
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 6e-45
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 1e-44
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 7e-44
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 9e-43
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 2e-42
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 2e-37
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 1e-36
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 1e-32
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 2e-31
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Length = 152 Back     alignment and structure
 Score =  178 bits (453), Expect = 1e-58
 Identities = 82/126 (65%), Positives = 96/126 (76%)

Query: 10  VKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGP 69
            K VA++S +  V G++ F Q  +G T V G I+GLKPGLHGFH+HALGDTTNGC STGP
Sbjct: 2   AKGVAVLSSSEGVAGTILFTQEGDGPTTVTGNISGLKPGLHGFHVHALGDTTNGCMSTGP 61

Query: 70  HFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHAD 129
           HFNP  K+HG+P D  RH GDLGNI  G DG A  +I D+ IPL+G HSI+GRAVVVHAD
Sbjct: 62  HFNPAGKEHGSPEDETRHAGDLGNITVGDDGTACFTIVDKQIPLTGPHSIIGRAVVVHAD 121

Query: 130 PDDLGK 135
           PDDLGK
Sbjct: 122 PDDLGK 127
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 1srd_A Length = 154 Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Length = 156 Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} PDB: 3f7k_A Length = 152 Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Length = 150 Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Length = 154 Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Length = 156 Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Length = 153 Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} PDB: 3kbf_A Length = 157 Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Length = 168 Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Length = 154 Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} PDB: 3l9e_A Length = 154 Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Length = 175 Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Length = 154 Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Length = 154 Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Length = 208 Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Length = 156 Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Length = 151 Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Length = 164 Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Length = 177 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Length = 222 Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Length = 140 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
3pu7_A154 Superoxide dismutase [CU-ZN], chloroplastic; oxido 100.0
4a7u_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, amyo 100.0
3f7l_A152 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
2q2l_A152 Superoxide dismutase; SOD, SAD, antioxidant, oxido 100.0
3l9y_A154 Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY 100.0
1xso_A150 Copper,zinc superoxide dismutase; oxidoreductase ( 100.0
1f1g_A154 Cuznsod, copper-zinc superoxide dismutase; nitric 100.0
1to4_A156 Superoxide dismutase; beta-barrel, oxidoreductase; 100.0
2wyt_A153 Superoxide dismutase [CU-ZN]; oxidoreductase, dise 100.0
3kbe_A157 Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dis 100.0
3ce1_A168 Superoxide dismutase [CU-ZN]; greek-KEY beta barre 100.0
2e47_A156 EA4, TIME interVal measuring enzyme TIME; motallop 100.0
1do5_A154 Human copper chaperone for superoxide dismutase do 100.0
1xtm_B175 Hypothetical superoxide dismutase-like protein YO; 100.0
1ej8_A140 Lys7; beta barrel, copper chaperone for SOD, domai 100.0
2jlp_A222 Extracellular superoxide dismutase (Cu-Zn); glycol 100.0
1z9n_A177 Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxid 100.0
2aqp_A164 Superoxide dismutase [CU-ZN]; electrostatic guidan 100.0
2aqm_A154 Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10 100.0
1oal_A151 Superoxide dismutase; oxidoreductase, prokaryotic 100.0
1eqw_A156 Cu,Zn superoxide dismutase; greek KEY B-barrel, ox 100.0
1eso_A154 SOD, Cu, Zn superoxide dismutase; oxidoreductase, 100.0
1pzs_A208 Superoxide dismutase [CU-ZN]; Cu-protein, beta cor 100.0
1qup_A222 Superoxide dismutase 1 copper chaperone; two domai 100.0
1jk9_B249 CCS, copper chaperone for superoxide dismutase; pr 100.0
>3pu7_A Superoxide dismutase [CU-ZN], chloroplastic; oxidoreductase, antioxidant, metal-binding, DIS bond, transit peptide; 1.80A {Solanum lycopersicum} PDB: 3km1_A 3km2_A 3mkg_A 3hog_A 3s0p_A 1srd_A Back     alignment and structure
Probab=100.00  E-value=2.3e-49  Score=297.09  Aligned_cols=134  Identities=58%  Similarity=0.933  Sum_probs=128.6

Q ss_pred             ceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCCC
Q 032143            9 TVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERHT   88 (146)
Q Consensus         9 ~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~~   88 (146)
                      +.+|||+|++.++|+|+|+|+|.+++.|+|+++|+||+||+|+|||||+|||+++|.|||+||||+++.|+.|++..||+
T Consensus         2 ~~~Avavl~g~~~V~G~v~f~q~~~g~v~v~~~i~GL~pG~hgfHIHe~Gd~s~gc~SaGgHfnP~~~~Hg~p~~~~~h~   81 (154)
T 3pu7_A            2 TKKAVAVLKGNSNVEGVVTLSQDDDGPTTVNVRITGLAPGLHGFHLHEYGDTTNGCMSTGAHFNPNKLTHGAPGDEIRHA   81 (154)
T ss_dssp             EEEEEEEEBCSSSCEEEEEEEEETTSCEEEEEEEESCCSEEEEEEEESCCCCTTGGGGGCSBCCTTCCCCCCTTCSSCCT
T ss_pred             CceEEEEECCCCCCEEEEEEEEeCCCcEEEEEEEECCCCCcccEEEeecCCCCCCccccccccCCccCcCCCCCccCCcC
Confidence            56899999998889999999999877799999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCcc
Q 032143           89 GDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLDS  142 (146)
Q Consensus        89 GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~~  142 (146)
                      ||||||+++++|++++.|++++++|+++++|+|||||||+++||||+|+++.|.
T Consensus        82 GDLgni~~~~~G~a~~~~~d~~l~L~g~~~iiGRslVIH~~~DD~~~g~~~~s~  135 (154)
T 3pu7_A           82 GDLGNIVANADGVAEVTLVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSL  135 (154)
T ss_dssp             TEEEEEEECTTSCEEEEEEESSCCSSSTTCCTTSEEEEESSCCCTTCSCCTTTT
T ss_pred             CcccCEEeCCCCcEEEEEEeCCeeeCCCCccCCeEEEEECCCccCCCCCCcCCc
Confidence            999999999999999999999999999999999999999999999999998873
>4a7u_A Superoxide dismutase [CU-ZN]; oxidoreductase, amyotrophic lateral sclerosis, antioxidant, mutation, metal-binding, Zn superoxide dismutase; HET: ALE; 0.98A {Homo sapiens} PDB: 3ecv_A 1uxl_A* 4a7g_F* 4a7q_A* 4a7t_A* 4a7s_A* 4a7v_A* 4b3e_A 4a7g_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A ... Back     alignment and structure
>3f7l_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor), greek KEY beta-barrel, amyloid filaments, ALS, FALS; 0.99A {Alvinella pompejana} SCOP: b.1.8.1 PDB: 3f7k_A Back     alignment and structure
>2q2l_A Superoxide dismutase; SOD, SAD, antioxidant, oxidoreductase, metal-binding; 2.37A {Potentilla atrosanguinea} Back     alignment and structure
>3l9y_A Cu-znsod1, superoxide dismutase [CU-ZN]; greek-KEY-barrel, antioxidant, copper, cytoplasm, metal- binding, oxidoreductase; 1.80A {Bombyx mori} SCOP: b.1.8.1 PDB: 3l9e_A Back     alignment and structure
>1xso_A Copper,zinc superoxide dismutase; oxidoreductase (superoxide acceptor); 1.49A {Xenopus laevis} SCOP: b.1.8.1 Back     alignment and structure
>1f1g_A Cuznsod, copper-zinc superoxide dismutase; nitric oxide, oxidoreductase; 1.35A {Saccharomyces cerevisiae} SCOP: b.1.8.1 PDB: 1f1a_A 1f18_A 1jcv_A 1b4l_A 1sdy_A 1yaz_A 1yso_A 2jcw_A 1f1d_A 1jk9_A 1b4t_A Back     alignment and structure
>1to4_A Superoxide dismutase; beta-barrel, oxidoreductase; 1.55A {Schistosoma mansoni} SCOP: b.1.8.1 PDB: 1to5_A 3mnd_A Back     alignment and structure
>2wyt_A Superoxide dismutase [CU-ZN]; oxidoreductase, disease mutation, amyotrophic lateral sclero antioxidant; HET: SO4; 1.00A {Homo sapiens} PDB: 2wyz_A* 2wz0_A* 2wz5_A* 1hl4_A 1spd_A 2c9v_A* 1hl5_A 1pu0_A 2c9u_A 2c9s_A* 2v0a_A* 3ecu_A 3kh3_A 3kh4_A 3re0_A 2wko_A 3gzo_A 2wz6_A* 3gzp_A 1uxl_A ... Back     alignment and structure
>3kbe_A Superoxide dismutase [CU-ZN]; Cu-Zn superoxide dismutase, antioxidant, oxidoreductase, NEM disulfide bond, metal-binding; 1.10A {Caenorhabditis elegans} SCOP: b.1.8.1 PDB: 3kbf_A Back     alignment and structure
>3ce1_A Superoxide dismutase [CU-ZN]; greek-KEY beta barrel, antioxidant, copper, metal-binding, oxidoreductase, zinc; 1.20A {Cryptococcus liquefaciens} Back     alignment and structure
>2e47_A EA4, TIME interVal measuring enzyme TIME; motalloprotein, glycoprotein, metal binding protein; HET: NAG MAN; 2.11A {Bombyx mori} PDB: 2e46_A Back     alignment and structure
>1do5_A Human copper chaperone for superoxide dismutase domain II; beta-barrel; 2.75A {Homo sapiens} SCOP: b.1.8.1 Back     alignment and structure
>1xtm_B Hypothetical superoxide dismutase-like protein YO; SOD, Cu-Zn SOD, SOD-like, superoxide dismutase mutants, STRU genomics, unknown function; 1.60A {Bacillus subtilis} PDB: 1xtl_B 1s4i_B 1u3n_A Back     alignment and structure
>1ej8_A Lys7; beta barrel, copper chaperone for SOD, domain 2; 1.55A {Saccharomyces cerevisiae} SCOP: b.1.8.1 Back     alignment and structure
>2jlp_A Extracellular superoxide dismutase (Cu-Zn); glycolisation, oxidoreductase, heparin binding, heparin-BIND oxidative stress, antioxidant; 1.70A {Homo sapiens} Back     alignment and structure
>1z9n_A Superoxide dismutase [CU-ZN]; Cu-Zn SOD, SOD, oxidoreductase; HET: HEM; 1.50A {Haemophilus ducreyi} Back     alignment and structure
>2aqp_A Superoxide dismutase [CU-ZN]; electrostatic guidance, neisseria MENI oxidoreductase; 1.30A {Neisseria meningitidis} PDB: 2aqn_A 2aqr_A 2aqq_A 2aqt_C 2aqs_A 2aps_A 1z9p_A Back     alignment and structure
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus} Back     alignment and structure
>1oal_A Superoxide dismutase; oxidoreductase, prokaryotic Cu, protein-subunit interaction recognition, protein electrostatic; 1.5A {Photobacterium leiognathi} SCOP: b.1.8.1 PDB: 1bzo_A 1ibh_A 1ibd_A 1yai_A 1ib5_A 1oaj_A 1ibb_A 1ibf_A Back     alignment and structure
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A* Back     alignment and structure
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A Back     alignment and structure
>1pzs_A Superoxide dismutase [CU-ZN]; Cu-protein, beta core, antioxidant, metal binding, greek KEY barrel, oxidoreductase; 1.63A {Mycobacterium tuberculosis} SCOP: b.1.8.1 Back     alignment and structure
>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure
>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 146
d1to4a_156 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bloo 1e-37
d2c9va1153 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD 3e-37
d1srda_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spin 3e-36
d1xsoa_150 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Afri 5e-35
d1f1ga_153 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Bake 3e-34
d1do5a_154 b.1.8.1 (A:) Copper chaperone for superoxide dismu 2e-33
d1eqwa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salm 3e-29
d1oala_151 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Phot 4e-28
d1ej8a_140 b.1.8.1 (A:) Copper chaperone for superoxide dismu 4e-28
d2apsa_155 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Acti 2e-27
d1esoa_154 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Esch 7e-27
d1pzsa_171 b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Myco 8e-27
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Length = 156 Back     information, alignment and structure

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

 Score =  123 bits (310), Expect = 1e-37
 Identities = 69/129 (53%), Positives = 92/129 (71%), Gaps = 1/129 (0%)

Query: 8   ATVKAVALISGATSVKGSLHFVQ-GPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNS 66
           + +KAV +++G   VKG + F Q   NG  HV  + +GLK G HGFH+H  GDTTNGC S
Sbjct: 2   SNMKAVCVMTGTAGVKGVVKFTQETDNGPVHVHAEFSGLKAGKHGFHVHEFGDTTNGCTS 61

Query: 67  TGPHFNPLKKDHGAPSDNERHTGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVV 126
            G HFNP K++HGAP D+ RH GDLGN+VAG DG A  +  D++I L+G HSI+GR++V+
Sbjct: 62  AGAHFNPTKQEHGAPEDSIRHVGDLGNVVAGADGNAVYNATDKLISLNGSHSIIGRSMVI 121

Query: 127 HADPDDLGK 135
           H + DDLG+
Sbjct: 122 HENEDDLGR 130
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Length = 153 Back     information, alignment and structure
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 154 Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Length = 150 Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 153 Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 154 Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Length = 155 Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Length = 151 Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140 Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Length = 155 Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Length = 154 Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Length = 171 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query146
d1srda_154 Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia 100.0
d1to4a_156 Cu,Zn superoxide dismutase, SOD {Blood fluke (Schi 100.0
d1f1ga_153 Cu,Zn superoxide dismutase, SOD {Baker's yeast (Sa 100.0
d2c9va1153 Cu,Zn superoxide dismutase, SOD {Human (Homo sapie 100.0
d1xsoa_150 Cu,Zn superoxide dismutase, SOD {African clawed fr 100.0
d1do5a_154 Copper chaperone for superoxide dismutase, C-termi 100.0
d2apsa_155 Cu,Zn superoxide dismutase, SOD {Actinobacillus pl 100.0
d1oala_151 Cu,Zn superoxide dismutase, SOD {Photobacterium le 100.0
d1ej8a_140 Copper chaperone for superoxide dismutase, C-termi 100.0
d1esoa_154 Cu,Zn superoxide dismutase, SOD {Escherichia coli 100.0
d1eqwa_155 Cu,Zn superoxide dismutase, SOD {Salmonella typhim 100.0
d1pzsa_171 Cu,Zn superoxide dismutase, SOD {Mycobacterium tub 100.0
>d1srda_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Spinach (Spinacia oleracea) [TaxId: 3562]} Back     information, alignment and structure
class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Cu,Zn superoxide dismutase-like
family: Cu,Zn superoxide dismutase-like
domain: Cu,Zn superoxide dismutase, SOD
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=100.00  E-value=4.3e-47  Score=282.90  Aligned_cols=135  Identities=59%  Similarity=0.952  Sum_probs=129.2

Q ss_pred             cceeEEEEEcCCCCeEEEEEEEEcCCCcEEEEEEeccCCCCeeeEEEeccCCCCCCCCCCCCccCCCCCCCCCCCCCCCC
Q 032143            8 ATVKAVALISGATSVKGSLHFVQGPNGVTHVKGKITGLKPGLHGFHIHALGDTTNGCNSTGPHFNPLKKDHGAPSDNERH   87 (146)
Q Consensus         8 ~~~~Ava~l~~~~~v~G~v~f~q~~~g~v~v~~~v~GL~~g~hg~HIHe~gd~~~~c~saGgHfnp~~~~hg~p~~~~~~   87 (146)
                      +.++|||+|++.+.++|+|+|+|.+++.|+|+++|+||+||+|+|||||+|+|+++|.++|+||||.+..|+.|....+|
T Consensus         1 ~~~~Ava~~~g~~~v~G~v~f~q~~~g~v~v~v~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h   80 (154)
T d1srda_           1 ATKKAVAVLKGTSNVEGVVTLTQEDDGPTTVNVRISGLAPGKHGFHLHEFGDTTNGCMSTGPHFNPDKKTHGAPEDEVRH   80 (154)
T ss_dssp             CEEEEEEECBCSSSCCCEEEEEEETTSCEEEEEEEESCCSEECCEEEESCCCCTTGGGGGCSBCCTTCCCCCCSSCSSCC
T ss_pred             CCcEEEEEEcCCCCcEEEEEEEECCCCcEEEEEEEecCCCCceeEEEecCCccCCCccccccccccccccccCCCccccc
Confidence            46799999999889999999999888789999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCceeeCCCCeEEEEEEEeeeecCCCCCCCccEEEEecCCCCCCCCCCCCcc
Q 032143           88 TGDLGNIVAGPDGVAEVSIADRMIPLSGQHSILGRAVVVHADPDDLGKVSGTLDS  142 (146)
Q Consensus        88 ~GDLgni~~~~~G~~~~~~~~~~l~L~g~~siiGRSiVIH~~~Dd~g~g~~~~~~  142 (146)
                      +||||||+++++|.++++|+++.++|+++++|+|||||||+.+|||++++++.|.
T Consensus        81 ~GDLgni~~~~~G~~~~~~~~~~l~L~g~~~iiGRSivIH~~~Dd~~~~~~~~s~  135 (154)
T d1srda_          81 AGDLGNIVANTDGVAEATIVDNQIPLTGPNSVVGRALVVHELEDDLGKGGHELSP  135 (154)
T ss_dssp             SSBCCCCEECTTSEEEEEEEESSCCSSSTTCCTTCEEEEESSCCCTTCSCSSSTT
T ss_pred             cccccCeEECCCCeEEEEEEeCcEEeCCCCCCCCcEEEEecCCcccCCCCcccCc
Confidence            9999999999999999999999999999999999999999999999999988764
>d1to4a_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Blood fluke (Schistosoma mansoni) [TaxId: 6183]} Back     information, alignment and structure
>d1f1ga_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2c9va1 b.1.8.1 (A:1-153) Cu,Zn superoxide dismutase, SOD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xsoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {African clawed frog (Xenopus laevis) [TaxId: 8355]} Back     information, alignment and structure
>d1do5a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2apsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Actinobacillus pleuropneumoniae [TaxId: 715]} Back     information, alignment and structure
>d1oala_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Photobacterium leiognathi [TaxId: 553611]} Back     information, alignment and structure
>d1ej8a_ b.1.8.1 (A:) Copper chaperone for superoxide dismutase, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1esoa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1eqwa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1pzsa_ b.1.8.1 (A:) Cu,Zn superoxide dismutase, SOD {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure