Citrus Sinensis ID: 032170

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MGVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFSDENPNACSIM
Secondary Structure (PSIPRED)
ccHHHHHHHHHccccccccccccEEEEEEEEccHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEccHHHHHHHHHHHcccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHcccccccccccEEEEEEEEEEccHHHHHHHHHHHHHccccEEEEEcccccEEEEEEEccHHHHHHHHHHccccEEEcccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccEcc
Coil and Loop (DISEMBL)
MGVLDHLFDLfettprgkkrkpmqtvdikvkmdcdgceRKVRNAVSSIRGAKSVEVNRKQSRVTvtgyvdpnkvLKKVKStgkraefwpyvpynlvaypyvaqaydkkapsgyVKNVVqalpspnatderlttlfsdenpnacsim
Flexible Loop (DISEMBL)
mgvldhlfdlfettprgkkrkpmqtvdikvkmdcdgcerKVRNavssirgaksvevnrkqsrvtvtgyvdpnkvlkkvkstgkraefwpyvpYNLVAYPYVAQAYDKKAPSGYVKNVVQALPspnatderlttlfsdenpnacsim
Low Complexity Region (SEG)
MGVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFSDENPNACSIM
Disordered region (IsUnstruct)
*****HLFDLF**************VDIKVKMDCDGCERKVRNAV****************RVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQ***************************
Disordered Region (DISOPRED)
*GVLDHL*****************TVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNL******************VKNVVQALPSPNATDERLTTLFSDENPNACSIM
Disordered Region (DISEMBL)
MGVLDHLFDLFETTP********QTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFSDENPNACSIM
Disordered Region (DISPRO)
*GVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFSDENPNACSIM
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQALPSPNATDERLTTLFSDENPNACSIM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9SZN7	153	Heavy metal-associated is	no	no	1.0	0.954	0.555	7e-43

>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26 OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1

 Score =  172 bits (436), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 111/153 (72%), Gaps = 7/153 (4%)

Query: 1   MGVLDHLFDLFETTP--RGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNR 58
           MGVLDH+ ++F+ +   + KKRK +QTV+IKVKMDC+GCERKVR +V  ++G  SV +  
Sbjct: 1   MGVLDHVSEMFDCSHGHKIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEP 60

Query: 59  KQSRVTVTGYVDPNKVLKKVKS-TGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNV 117
           K  +VTV GYVDPNKV+ ++   TGK+ E WPYVPY++VA+PY A  YDKKAPSGYV+ V
Sbjct: 61  KAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRV 120

Query: 118 ----VQALPSPNATDERLTTLFSDENPNACSIM 146
               V  L   ++T+ R TT FSDENP AC +M
Sbjct: 121 DDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

Heavy-metal-binding protein. Binds lead, cadmium and copper. May be involved in heavy-metal transport.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
224111540	150	predicted protein [Populus trichocarpa]	1.0	0.973	0.813	5e-66
225424182	147	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.802	2e-64
147776063	170	hypothetical protein VITISV_023249 [Viti	1.0	0.858	0.802	2e-64
388503066	147	unknown [Lotus japonicus]	1.0	0.993	0.789	6e-64
356575644	146	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.801	9e-64
255580479	150	metal ion binding protein, putative [Ric	1.0	0.973	0.786	1e-63
356530758	147	PREDICTED: uncharacterized protein LOC10	1.0	0.993	0.768	2e-62
356536198	146	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.787	4e-62
388497630	146	unknown [Lotus japonicus]	0.993	0.993	0.795	2e-61
225453114	146	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.732	1e-58

>gi|224111540|ref|XP_002315894.1| predicted protein [Populus trichocarpa] gi|222864934|gb|EEF02065.1| predicted protein [Populus trichocarpa]

 Score =  255 bits (651), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 122/150 (81%), Positives = 135/150 (90%), Gaps = 4/150 (2%)

Query: 1   MGVLD----HLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEV 56
           MG LD    +L DLF    + +KRKPMQTVDIKVKMDCDGCER+V+N+VSS++G KSVEV
Sbjct: 1   MGALDDLSDYLSDLFTVARKKRKRKPMQTVDIKVKMDCDGCERRVKNSVSSMKGVKSVEV 60

Query: 57  NRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKN 116
           NRKQSRVTV+G V+PNKVLKKVKSTGKRAEFWPYVPYNLVAYPY AQAYDKKAP+GYVKN
Sbjct: 61  NRKQSRVTVSGNVEPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYAAQAYDKKAPAGYVKN 120

Query: 117 VVQALPSPNATDERLTTLFSDENPNACSIM 146
           VVQALPSPNATDER T++FSDENPNACSIM
Sbjct: 121 VVQALPSPNATDERFTSMFSDENPNACSIM 150

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225424182|ref|XP_002284123.1| PREDICTED: uncharacterized protein LOC100254317 isoform 1 [Vitis vinifera] gi|297737722|emb|CBI26923.3| unnamed protein product [Vitis vinifera]

 Score =  249 bits (637), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 135/147 (91%), Gaps = 1/147 (0%)

Query: 1   MGVLDHLFDLFE-TTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRK 59
           MG LD+  +L   T+ R  KRKPMQTVDIKVKMDCDGCER+V+NAVSS++G K+V++NRK
Sbjct: 1   MGALDYFSNLCTVTSTRKSKRKPMQTVDIKVKMDCDGCERRVKNAVSSMKGVKTVDINRK 60

Query: 60  QSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQ 119
           QSRVTV+G+VDPNKVLK+VKSTGKRAEFWPYVPYNLV YPY+ +AYDKKAPSGYVKNVVQ
Sbjct: 61  QSRVTVSGFVDPNKVLKRVKSTGKRAEFWPYVPYNLVYYPYIKEAYDKKAPSGYVKNVVQ 120

Query: 120 ALPSPNATDERLTTLFSDENPNACSIM 146
           ALPSP+ATDERLTTLFSD+NPNACSIM
Sbjct: 121 ALPSPSATDERLTTLFSDDNPNACSIM 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776063|emb|CAN63279.1| hypothetical protein VITISV_023249 [Vitis vinifera]

 Score =  249 bits (636), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 118/147 (80%), Positives = 135/147 (91%), Gaps = 1/147 (0%)

Query: 1   MGVLDHLFDLFE-TTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRK 59
           MG LD+  +L   T+ R  KRKPMQTVDIKVKMDCDGCER+V+NAVSS++G K+V++NRK
Sbjct: 1   MGALDYFSNLCTVTSTRKSKRKPMQTVDIKVKMDCDGCERRVKNAVSSMKGVKTVDINRK 60

Query: 60  QSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQ 119
           QSRVTV+G+VDPNKVLK+VKSTGKRAEFWPYVPYNLV YPY+ +AYDKKAPSGYVKNVVQ
Sbjct: 61  QSRVTVSGFVDPNKVLKRVKSTGKRAEFWPYVPYNLVYYPYIKEAYDKKAPSGYVKNVVQ 120

Query: 120 ALPSPNATDERLTTLFSDENPNACSIM 146
           ALPSP+ATDERLTTLFSD+NPNACSIM
Sbjct: 121 ALPSPSATDERLTTLFSDDNPNACSIM 147

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388503066|gb|AFK39599.1| unknown [Lotus japonicus]

 Score =  248 bits (633), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 116/147 (78%), Positives = 133/147 (90%), Gaps = 1/147 (0%)

Query: 1   MGVLDHLFDLFETTPR-GKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRK 59
           MGVLD+L D F  +P  GKKRKPMQTV+IKVKMDCDGCER+VRN+V+ ++G +SVE+NRK
Sbjct: 1   MGVLDYLSDYFSVSPSTGKKRKPMQTVEIKVKMDCDGCERRVRNSVAHMKGVRSVEINRK 60

Query: 60  QSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQ 119
           QS+VTV+GYVD N+VLKKV+STGKRAEFWPY+PYNLVAYPYVAQ YDKKAP GYVKN VQ
Sbjct: 61  QSKVTVSGYVDRNRVLKKVQSTGKRAEFWPYIPYNLVAYPYVAQVYDKKAPPGYVKNSVQ 120

Query: 120 ALPSPNATDERLTTLFSDENPNACSIM 146
           ALPSPNA D++LT LFSDENPNACSIM
Sbjct: 121 ALPSPNALDDKLTNLFSDENPNACSIM 147

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575644|ref|XP_003555948.1| PREDICTED: uncharacterized protein LOC100798163 [Glycine max]

 Score =  247 bits (631), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 117/146 (80%), Positives = 130/146 (89%)

Query: 1   MGVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQ 60
           MG LD L D F  + + KKRKPMQTV+IKVKMDCDGCER+VRN+VS++ G K VEVNRKQ
Sbjct: 1   MGALDFLSDYFSISTQKKKRKPMQTVEIKVKMDCDGCERRVRNSVSNMSGVKQVEVNRKQ 60

Query: 61  SRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQA 120
           SRVTVTGYVD NKVLKKV+STGKRAEFWPY+ YNLVAYPYVAQAYDKKAPSGYVKN  QA
Sbjct: 61  SRVTVTGYVDRNKVLKKVQSTGKRAEFWPYIQYNLVAYPYVAQAYDKKAPSGYVKNTEQA 120

Query: 121 LPSPNATDERLTTLFSDENPNACSIM 146
           LP+PNA DE+LT+LFSD+NPNACSIM
Sbjct: 121 LPNPNAPDEKLTSLFSDDNPNACSIM 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255580479|ref|XP_002531065.1| metal ion binding protein, putative [Ricinus communis] gi|223529360|gb|EEF31326.1| metal ion binding protein, putative [Ricinus communis]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 118/150 (78%), Positives = 134/150 (89%), Gaps = 4/150 (2%)

Query: 1   MGVLD----HLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEV 56
           MG LD    +L DLF    + +KRKPMQTV+IKVKMDCDGCER+V++AVS+I+G KSVEV
Sbjct: 1   MGALDDLSDYLSDLFTYARKKRKRKPMQTVEIKVKMDCDGCERRVKHAVSNIKGVKSVEV 60

Query: 57  NRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKN 116
           NRKQSRV V+GY++PNKVLKKV+STGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKN
Sbjct: 61  NRKQSRVVVSGYIEPNKVLKKVRSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKN 120

Query: 117 VVQALPSPNATDERLTTLFSDENPNACSIM 146
           V QALPSPNA DE+ TT+FSDENP+ACSIM
Sbjct: 121 VFQALPSPNAPDEKYTTMFSDENPHACSIM 150

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356530758|ref|XP_003533947.1| PREDICTED: uncharacterized protein LOC100795068 [Glycine max]

 Score =  243 bits (620), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 113/147 (76%), Positives = 131/147 (89%), Gaps = 1/147 (0%)

Query: 1   MGVLDHLFDLFETTP-RGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRK 59
           MGVLD++ + F  +P  GKKRK MQTV+IKVKMDCDGCER+VRN+V  ++G K VEVNRK
Sbjct: 1   MGVLDYISEFFSVSPATGKKRKAMQTVEIKVKMDCDGCERRVRNSVVHMKGVKQVEVNRK 60

Query: 60  QSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQ 119
           QS+VTVTGYVD N+VLKKV+STGKRA+FWPY+PYNLVAYPYVAQAYDKKAPSGYVKN  Q
Sbjct: 61  QSKVTVTGYVDRNRVLKKVQSTGKRADFWPYIPYNLVAYPYVAQAYDKKAPSGYVKNAAQ 120

Query: 120 ALPSPNATDERLTTLFSDENPNACSIM 146
           ALP+ N+ DE+LT+LFSDENPNACSIM
Sbjct: 121 ALPASNSLDEKLTSLFSDENPNACSIM 147

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356536198|ref|XP_003536626.1| PREDICTED: uncharacterized protein LOC100785059 [Glycine max]

 Score =  242 bits (617), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 115/146 (78%), Positives = 128/146 (87%)

Query: 1   MGVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQ 60
           MG LD L D F  +   KKRKPMQTV+IKVKMDCDGCER+VRN+VS++ G K VEVNRKQ
Sbjct: 1   MGALDFLSDYFSVSTPKKKRKPMQTVEIKVKMDCDGCERRVRNSVSNMSGVKQVEVNRKQ 60

Query: 61  SRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQA 120
           S+VTVTGYVD NKVLKKV+STGKRAEFWPY+ YNLVAYPYV QAYDKKAPSGYVKN  QA
Sbjct: 61  SKVTVTGYVDRNKVLKKVQSTGKRAEFWPYIQYNLVAYPYVVQAYDKKAPSGYVKNTEQA 120

Query: 121 LPSPNATDERLTTLFSDENPNACSIM 146
           LP+PNA DE+LT+LFSD+NPNACSIM
Sbjct: 121 LPNPNAPDEKLTSLFSDDNPNACSIM 146

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497630|gb|AFK36881.1| unknown [Lotus japonicus]

 Score =  239 bits (611), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 117/147 (79%), Positives = 131/147 (89%), Gaps = 2/147 (1%)

Query: 1   MGVLDHLFDLFE-TTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRK 59
           MG  D L D F  +TPR KKRKPMQTV+IKVKMDCDGCER+VRN+VS+++G K VEVNRK
Sbjct: 1   MGAFDFLSDYFSVSTPR-KKRKPMQTVEIKVKMDCDGCERRVRNSVSNMKGVKEVEVNRK 59

Query: 60  QSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQ 119
           QS+V+VTGYVD NKVLKKV+STGKRAEFWPY+ YNLVAYPYVAQAYDKKAPSGYVKN   
Sbjct: 60  QSKVSVTGYVDRNKVLKKVQSTGKRAEFWPYIQYNLVAYPYVAQAYDKKAPSGYVKNTDL 119

Query: 120 ALPSPNATDERLTTLFSDENPNACSIM 146
           ALP+PNA DE+LTTLFSD+NPNACSIM
Sbjct: 120 ALPNPNAPDEKLTTLFSDDNPNACSIM 146

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453114|ref|XP_002272293.1| PREDICTED: uncharacterized protein LOC100255386 [Vitis vinifera] gi|296087186|emb|CBI33560.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (588), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 107/146 (73%), Positives = 126/146 (86%)

Query: 1   MGVLDHLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQ 60
           MG LD+  +    T    KRKPMQTV+IKVKMDCDGCER+V+NAV+S+RG KSVEV RKQ
Sbjct: 1   MGALDYFSNFCTVTSTKGKRKPMQTVEIKVKMDCDGCERRVKNAVTSMRGVKSVEVIRKQ 60

Query: 61  SRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQA 120
           SRVTVTGYVD NKVLK+VKSTGKRAEFWPY+PYNLV+YPY  QAYDK+AP+GYV+NVVQA
Sbjct: 61  SRVTVTGYVDANKVLKRVKSTGKRAEFWPYIPYNLVSYPYATQAYDKRAPAGYVRNVVQA 120

Query: 121 LPSPNATDERLTTLFSDENPNACSIM 146
           +  PN  ++R+T+LFSD+NPNACSIM
Sbjct: 121 VAVPNDPEDRITSLFSDDNPNACSIM 146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2017759	152	HIPP22 "heavy metal associated	1.0	0.960	0.638	1.8e-48
TAIR|locus:2026336	152	HIPP20 "heavy metal associated	1.0	0.960	0.605	2.3e-46
TAIR|locus:2157457	149	HIPP21 "heavy metal associated	1.0	0.979	0.604	6.2e-46
TAIR|locus:2135277	158	AT4G39700 [Arabidopsis thalian	0.883	0.816	0.616	2.5e-42
TAIR|locus:2121199	153	FP6 "farnesylated protein 6" [	1.0	0.954	0.555	4.6e-41
TAIR|locus:2133544	150	AT4G08570 "AT4G08570" [Arabido	0.979	0.953	0.520	5.5e-38
TAIR|locus:2131561	153	HIPP25 "heavy metal associated	1.0	0.954	0.483	4.4e-36
TAIR|locus:2156927	147	HIPP27 "heavy metal associated	0.883	0.877	0.525	4.6e-34
TAIR|locus:2202265	159	AT1G06330 "AT1G06330" [Arabido	0.486	0.446	0.541	1.7e-25
TAIR|locus:4515103273	166	AT3G56891 [Arabidopsis thalian	0.527	0.463	0.512	4.3e-23

TAIR|locus:2017759 HIPP22 "heavy metal associated isoprenylated plant protein 22" [Arabidopsis thaliana (taxid:3702)]

 Score = 506 (183.2 bits), Expect = 1.8e-48, P = 1.8e-48
 Identities = 97/152 (63%), Positives = 121/152 (79%)

Query:     1 MGVLDHLFDLFE-----TTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVE 55
             MG L++L + F      +  + KKRK MQTV+IKVK+DCDGCERK++NAVSSI+GAKSVE
Sbjct:     1 MGALNYLSEYFSNHFYVSIRKRKKRKVMQTVNIKVKIDCDGCERKIKNAVSSIKGAKSVE 60

Query:    56 VNRKQSRVTVTGYVDPNKVLKKVKSTGKR-AEFWPYVPYNLVAYPYVAQAYDKKAPSGYV 114
             VNRK  +VTV+GYVDP KVLK V+STGK+ AE WPYVPY +VAYPY A AYDK+AP G+V
Sbjct:    61 VNRKMHKVTVSGYVDPKKVLKTVQSTGKKKAELWPYVPYTMVAYPYAAGAYDKRAPPGFV 120

Query:   115 KNVVQALPSPNATDERLTTLFSDENPNACSIM 146
             +   QA   P +TD++L +LFSDENPNAC++M
Sbjct:   121 RKSEQAQAQPGSTDDKLMSLFSDENPNACTVM 152

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0016036 "cellular response to phosphate starvation" evidence=RCA

GO:0019375 "galactolipid biosynthetic process" evidence=RCA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2026336 HIPP20 "heavy metal associated isoprenylated plant protein 20" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 2.3e-46, P = 2.3e-46
 Identities = 92/152 (60%), Positives = 116/152 (76%)

Query:     1 MGVLD----HLFDLFETTPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEV 56
             MG LD    ++ D F  T + +KRK MQTV+IKVKMDCDGCER+V+NAVSS++G KSVEV
Sbjct:     1 MGALDSLSEYISDYFRVTRKRRKRKVMQTVNIKVKMDCDGCERRVKNAVSSMKGVKSVEV 60

Query:    57 NRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKN 116
             NRK  +VTV+GYV+P KVLK+++ TGK+AE WPYVPYN+VAYPY    YDKKAP+GYV+ 
Sbjct:    61 NRKIHKVTVSGYVEPKKVLKRIERTGKKAEIWPYVPYNMVAYPYAVGTYDKKAPAGYVRK 120

Query:   117 VVQALPS--PNATDERLTTLFSDENPNACSIM 146
               Q+     P A +    +LFSDENPNAC++M
Sbjct:   121 SEQSQLQLLPGAPENHYISLFSDENPNACTVM 152

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2157457 HIPP21 "heavy metal associated isoprenylated plant protein 21" [Arabidopsis thaliana (taxid:3702)]

 Score = 482 (174.7 bits), Expect = 6.2e-46, P = 6.2e-46
 Identities = 90/149 (60%), Positives = 115/149 (77%)

Query:     1 MGVLDHLFDLFETT-PRGK-KRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNR 58
             MG  D++      T    K KRKP+QTVDIKVKMDCDGCER+VRN V  ++G KSVEVNR
Sbjct:     1 MGAFDYISSFCSYTYANAKTKRKPLQTVDIKVKMDCDGCERRVRNVVRRMKGVKSVEVNR 60

Query:    59 KQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVV 118
             KQSR+TV G+VDPNKVLK+VKSTGK+AEFWPY+P ++V YP+    YDK+AP+G+++N  
Sbjct:    61 KQSRITVNGHVDPNKVLKRVKSTGKKAEFWPYIPQHMVYYPFAPGMYDKRAPAGHIRNPT 120

Query:   119 QALPSPNATDERLTTLFSDENPNA-CSIM 146
             Q+ P+ NA +E   +LFSD+N +A CSIM
Sbjct:   121 QSFPTANAPEENYVSLFSDDNVHAACSIM 149

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA;IGI

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2135277 AT4G39700 [Arabidopsis thaliana (taxid:3702)]

 Score = 448 (162.8 bits), Expect = 2.5e-42, P = 2.5e-42
 Identities = 82/133 (61%), Positives = 105/133 (78%)

Query:    18 KKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKK 77
             KK+K  QTV++KV+MDCDGC  K++N++SS++G K+VE+N+KQ +VTV+GY D +KVLKK
Sbjct:    26 KKKKQFQTVELKVRMDCDGCVLKIKNSLSSLKGVKTVEINKKQQKVTVSGYADASKVLKK 85

Query:    78 VKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVK----NVVQALPSPNATDERLTT 133
              K+TGK+AE WPYVPYNLVA PY+AQAYDKKAP GYV+    NV     +    D   T+
Sbjct:    86 AKATGKKAEIWPYVPYNLVAQPYIAQAYDKKAPPGYVRKVDPNVTTGTMAVYYDDPSYTS 145

Query:   134 LFSDENPNACSIM 146
             LFSD+NPNACSIM
Sbjct:   146 LFSDDNPNACSIM 158

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2121199 FP6 "farnesylated protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 85/153 (55%), Positives = 111/153 (72%)

Query:     1 MGVLDHLFDLFETTP--RGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNR 58
             MGVLDH+ ++F+ +   + KKRK +QTV+IKVKMDC+GCERKVR +V  ++G  SV +  
Sbjct:     1 MGVLDHVSEMFDCSHGHKIKKRKQLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEP 60

Query:    59 KQSRVTVTGYVDPNKVLKKVKS-TGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNV 117
             K  +VTV GYVDPNKV+ ++   TGK+ E WPYVPY++VA+PY A  YDKKAPSGYV+ V
Sbjct:    61 KAHKVTVVGYVDPNKVVARMSHRTGKKVELWPYVPYDVVAHPYAAGVYDKKAPSGYVRRV 120

Query:   118 ----VQALPSPNATDERLTTLFSDENPNACSIM 146
                 V  L   ++T+ R TT FSDENP AC +M
Sbjct:   121 DDPGVSQLARASSTEVRYTTAFSDENPAACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0010286 "heat acclimation" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2133544 AT4G08570 "AT4G08570" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 77/148 (52%), Positives = 108/148 (72%)

Query:     2 GVLDHLFDLFETTPRGKKRKPMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQ 60
             G ++++ DL +   R KK+K MQTV ++V ++DC+GCERK+++ +S ++G KSV+V+ K 
Sbjct:     5 GTMEYISDLLKKRKR-KKKKQMQTVALRVARIDCEGCERKIKHVLSGVKGVKSVDVDVKL 63

Query:    61 SRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQA 120
              +VTVTGY+DP KVL+  KST K+ E WPYVPY +VA PY++QAYDKKAP   V+ V   
Sbjct:    64 QKVTVTGYIDPKKVLEAAKSTKKKVELWPYVPYTMVANPYISQAYDKKAPPNMVRKVPDT 123

Query:   121 LPSPNAT--DERLTTLFSDENPNACSIM 146
               S N T  D+  T +FSDENPN+C+IM
Sbjct:   124 A-SVNETTVDDSYTIMFSDENPNSCAIM 150

GO:0005575 "cellular_component" evidence=ND

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

TAIR|locus:2131561 HIPP25 "heavy metal associated isoprenylated plant protein 25" [Arabidopsis thaliana (taxid:3702)]

 Score = 389 (142.0 bits), Expect = 4.4e-36, P = 4.4e-36
 Identities = 74/153 (48%), Positives = 106/153 (69%)

Query:     1 MGVLDHLFDLFETTPRGKKR-KPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRK 59
             MGVLDH+ + F+ +    KR K +QTVD++V +DC+GCERKVR A+  +RG + V +   
Sbjct:     1 MGVLDHVSEYFDCSHGSSKRHKSLQTVDVRVLIDCEGCERKVRRALEGMRGIRDVTIEPN 60

Query:    60 QSRVTVTGYVDPNKVLKKV-KSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNV- 117
               +VTV GYV+PNKV+ ++   TGKRAE +P+VPY++VA+PY +  YD +AP+GYV+N  
Sbjct:    61 AQKVTVVGYVEPNKVVARIIHRTGKRAELYPFVPYDVVAHPYASGVYDNRAPTGYVRNTE 120

Query:   118 ----VQALPSPNATDERLTTLFSDENPNACSIM 146
                 V  L   ++T+ R TT FSDEN +AC +M
Sbjct:   121 YDPHVSRLARASSTEVRYTTAFSDENASACVVM 153

GO:0005634 "nucleus" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2156927 HIPP27 "heavy metal associated isoprenylated plant protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 71/135 (52%), Positives = 96/135 (71%)

Query:    18 KKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKK 77
             KK K  Q V+IKVKMDC+GCER+VR +V  ++G   V V+ KQS++TV G+V P+KV+ +
Sbjct:    13 KKLKQFQKVEIKVKMDCEGCERRVRKSVEGMKGVSKVTVDPKQSKLTVEGFVQPSKVVHR 72

Query:    78 VKS-TGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKN-----VVQALPSPNATDERL 131
             V   TGK+AE WPYVPY +V +PY   AYDKKAP GYV+N     +V  L   ++ + + 
Sbjct:    73 VMHRTGKKAELWPYVPYEVVPHPYAPGAYDKKAPPGYVRNALADPLVAPLARASSFEVKY 132

Query:   132 TTLFSDENPNACSIM 146
             T+ FSD+NPNAC+IM
Sbjct:   133 TSAFSDDNPNACTIM 147

GO:0005737 "cytoplasm" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2202265 AT1G06330 "AT1G06330" [Arabidopsis thaliana (taxid:3702)]

 Score = 221 (82.9 bits), Expect = 1.7e-25, Sum P(2) = 1.7e-25
 Identities = 39/72 (54%), Positives = 55/72 (76%)

Query:    23 MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTG 82
             +QT++++V MDC GCE +V+NA+  +RG  +VE++  Q +VTVTGY D  KVLKKV+ TG
Sbjct:    10 LQTIEMRVHMDCVGCESRVKNALQKMRGVDAVEIDMVQQKVTVTGYADQKKVLKKVRKTG 69

Query:    83 KRAEFWPYVPYN 94
             +RAE W  +PYN
Sbjct:    70 RRAELWQ-LPYN 80

GO:0005507 "copper ion binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006825 "copper ion transport" evidence=ISS

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

TAIR|locus:4515103273 AT3G56891 [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 4.3e-23, Sum P(2) = 4.3e-23
 Identities = 41/80 (51%), Positives = 56/80 (70%)

Query:    17 GKKRKP--MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKV 74
             G  R P  +  V++ V MDC GCE+KVR A+S + G  +VE++  + +VTVTGYVD  +V
Sbjct:     7 GNSRLPIALSIVELLVDMDCKGCEKKVRRAISKLDGVDTVEIDVDRQKVTVTGYVDREEV 66

Query:    75 LKKVKSTGKRAEFWPYVPYN 94
             LK VK TG+ AE+WP+ PYN
Sbjct:    67 LKMVKRTGRTAEYWPF-PYN 85

GO:0005886 "plasma membrane" evidence=ISM

GO:0030001 "metal ion transport" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pm.C_LG_X0440 hypothetical protein (150 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
cd00371	63	cd00371, HMA, Heavy-metal-associated domain (HMA)	5e-14
pfam00403	62	pfam00403, HMA, Heavy-metal-associated domain	1e-11
COG2608	71	COG2608, CopZ, Copper chaperone [Inorganic ion tra	5e-08
PLN02957	238	PLN02957, PLN02957, copper, zinc superoxide dismut	7e-06
PRK10671	834	PRK10671, copA, copper exporting ATPase; Provision	3e-04
PRK11033	741	PRK11033, zntA, zinc/cadmium/mercury/lead-transpor	5e-04
PRK13748	561	PRK13748, PRK13748, putative mercuric reductase; P	0.002

>gnl|CDD|238219 cd00371, HMA, Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

 Score = 62.2 bits (152), Expect = 5e-14
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)

Query: 32 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAE 86
          M C GC  K+  A+  + G +SVEV+ +  + TV     V P ++L+ ++  G +A 
Sbjct: 7  MTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAGYKAR 63

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions. Length = 63

>gnl|CDD|215902 pfam00403, HMA, Heavy-metal-associated domain

 Score = 56.1 bits (136), Expect = 1e-11
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 3/60 (5%)

Query: 28 IKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDP---NKVLKKVKSTGKR 84
              M C GC +KV  A+S + G  SV V+ +  +VTVTG  DP    K+ K ++  G  
Sbjct: 3  RVPGMTCAGCAKKVEKALSKLPGVSSVSVDLETGKVTVTGDPDPLKLEKLKKAIEKAGYE 62

Length = 62

>gnl|CDD|225328 COG2608, CopZ, Copper chaperone [Inorganic ion transport and metabolism]

 Score = 47.0 bits (112), Expect = 5e-08
 Identities = 19/70 (27%), Positives = 34/70 (48%), Gaps = 4/70 (5%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          M    +KV+ M C  C + V  A+  + G  SV+V+ ++   TVT     VD   +++ +
Sbjct: 1  MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAI 60

Query: 79 KSTGKRAEFW 88
          +  G + E  
Sbjct: 61 EDAGYKVEEI 70

Length = 71

>gnl|CDD|215516 PLN02957, PLN02957, copper, zinc superoxide dismutase

 Score = 43.6 bits (103), Expect = 7e-06
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 30 VKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRA 85
          V M C+GC   V+N + ++ G K+VEV+     V V G      +   ++ TG++A
Sbjct: 12 VDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKA 67

Length = 238

>gnl|CDD|182635 PRK10671, copA, copper exporting ATPase; Provisional

 Score = 39.3 bits (92), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 26/55 (47%)

Query: 32  MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE 86
           M C  C  +V+NA+ S+ G     VN  +    V G   P  +++ V+  G  AE
Sbjct: 108 MSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAE 162

Length = 834

>gnl|CDD|236827 PRK11033, zntA, zinc/cadmium/mercury/lead-transporting ATPase; Provisional

 Score = 38.4 bits (90), Expect = 5e-04
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 32 MDCDGCERKVRNAVSSIRGAKSVEV 56
          MDC  C RKV NAV  + G   V+V
Sbjct: 62 MDCPSCARKVENAVRQLAGVNQVQV 86

Length = 741

>gnl|CDD|184298 PRK13748, PRK13748, putative mercuric reductase; Provisional

 Score = 36.7 bits (85), Expect = 0.002
 Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 3/67 (4%)

Query: 23 MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKS 80
          M T+ I   M CD C   V++A+  + G +S +V+  +  +++ +     P+ +   V  
Sbjct: 1  MTTLKIT-GMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAG 59

Query: 81 TGKRAEF 87
           G RA  
Sbjct: 60 LGYRATL 66

Length = 561

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PF00403	62	HMA: Heavy-metal-associated domain; InterPro: IPR0	99.56
COG2608	71	CopZ Copper chaperone [Inorganic ion transport and	99.48
KOG4656	247	consensus Copper chaperone for superoxide dismutas	99.42
KOG1603	73	consensus Copper chaperone [Inorganic ion transpor	99.38
PLN02957	238	copper, zinc superoxide dismutase	98.69
PRK10671	834	copA copper exporting ATPase; Provisional	98.56
COG2217	713	ZntA Cation transport ATPase [Inorganic ion transp	98.34
TIGR00003	68	copper ion binding protein. This model describes a	98.08
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.97
KOG0207	951	consensus Cation transport ATPase [Inorganic ion t	97.68
PRK10671	834	copA copper exporting ATPase; Provisional	97.58
PRK11033	741	zntA zinc/cadmium/mercury/lead-transporting ATPase	97.31
TIGR02052	92	MerP mercuric transport protein periplasmic compon	95.23
COG1888	97	Uncharacterized protein conserved in archaea [Func	93.89
PF01206	70	TusA: Sulfurtransferase TusA; InterPro: IPR001455	91.62
PRK13748	561	putative mercuric reductase; Provisional	90.91
cd00371	63	HMA Heavy-metal-associated domain (HMA) is a conse	89.11
PF02680	95	DUF211: Uncharacterized ArCR, COG1888; InterPro: I	89.06
PRK11018	78	hypothetical protein; Provisional	85.86
cd03421	67	SirA_like_N SirA_like_N, a protein of unknown func	84.87
PF01883	72	DUF59: Domain of unknown function DUF59; InterPro:	82.53
cd03420	69	SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox. SirA-like	80.35

>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures

Probab=99.56  E-value=3.4e-14  Score=84.88  Aligned_cols=58  Identities=36%  Similarity=0.614  Sum_probs=54.2

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCc
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKR   84 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~   84 (146)
                      +|+| ||+|++|+++|+++|.+++||.++.+|+.+++++|.++   +++++|.++|+++||+
T Consensus         1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~~Gy~   62 (62)
T PF00403_consen    1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEKAGYE   62 (62)
T ss_dssp             EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHHTTSE
T ss_pred             CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHHhCcC
Confidence            5889 99999999999999999999999999999999999976   4669999999999985

These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....

>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.48  E-value=5.7e-13  Score=81.83  Aligned_cols=66  Identities=29%  Similarity=0.514  Sum_probs=58.4

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEE--e-cCCHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT--G-YVDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~--~-~~~~~~i~~~i~~~G~~~~~~   88 (146)
                      |.+..|+| ||+|.+|+.+|+++|.+++||.++++++..+++.|.  + .++.++|.++|+.+||.+..+
T Consensus         1 ~~~~~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~~~~~~~~i~~ai~~aGy~~~~~   70 (71)
T COG2608           1 MMKTTLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDSNKVDIEAIIEAIEDAGYKVEEI   70 (71)
T ss_pred             CceEEEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcCCcCCHHHHHHHHHHcCCCeeec
Confidence            34678999 999999999999999999999999999999777666  4 379999999999999987653

>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]

Probab=99.42  E-value=4.3e-13  Score=96.20  Aligned_cols=95  Identities=26%  Similarity=0.399  Sum_probs=79.5

Q ss_pred             ceEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEeccCCCcccccCCcc
Q 032170           23 MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYNLVAYPYVA  102 (146)
Q Consensus        23 ~~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~~~~~~~~~~~~  102 (146)
                      .-+.+|.|.|+|++|+..|++.|..++||.++++|+.++.+.|.+...+.+|...|+.+|.+|.+.+.+..+++.-...-
T Consensus         6 ~~~~efaV~M~cescvnavk~~L~~V~Gi~~vevdle~q~v~v~ts~p~s~i~~~le~tGr~Avl~G~G~psaval~at~   85 (247)
T KOG4656|consen    6 TYEAEFAVQMTCESCVNAVKACLKGVPGINSVEVDLEQQIVSVETSVPPSEIQNTLENTGRDAVLRGAGKPSAVALLATV   85 (247)
T ss_pred             ceeEEEEEechhHHHHHHHHHHhccCCCcceEEEEhhhcEEEEEccCChHHHHHHHHhhChheEEecCCchhHHHHHHHH
Confidence            44678999999999999999999999999999999999999999999999999999999999999998766554443333


Q ss_pred             ccc-CCCCCCCCcCCC
Q 032170          103 QAY-DKKAPSGYVKNV  117 (146)
Q Consensus       103 ~~~-~~~~~~~~~r~~  117 (146)
                      +.| ...+.+|++|+.
T Consensus        86 a~~~~~~~v~GvvRf~  101 (247)
T KOG4656|consen   86 AKYTGPQAVQGVVRFV  101 (247)
T ss_pred             HHhcCCccceeEEEEE
Confidence            333 233677777774

>KOG1603 consensus Copper chaperone [Inorganic ion transport and metabolism]

Probab=99.38  E-value=6.1e-12  Score=77.66  Aligned_cols=68  Identities=51%  Similarity=0.968  Sum_probs=61.8

Q ss_pred             CceEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcC-CceEEec
Q 032170           22 PMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTG-KRAEFWP   89 (146)
Q Consensus        22 ~~~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G-~~~~~~~   89 (146)
                      .+.+.++++.|+|.+|..+|++.|+.++||.++.+|...++++|.|.+++..|++.|++.| .++.+|.
T Consensus         3 ~~~~~v~kv~~~C~gc~~kV~~~l~~~~GV~~v~id~~~~kvtV~g~~~p~~vl~~l~k~~~k~~~~~~   71 (73)
T KOG1603|consen    3 PIKTVVLKVNMHCEGCARKVKRVLQKLKGVESVDIDIKKQKVTVKGNVDPVKLLKKLKKTGGKRAELWK   71 (73)
T ss_pred             CccEEEEEECcccccHHHHHHHHhhccCCeEEEEecCCCCEEEEEEecCHHHHHHHHHhcCCCceEEec
Confidence            3566788889999999999999999999999999999999999999999999999999988 6666653

>PLN02957 copper, zinc superoxide dismutase

Probab=98.69  E-value=2.7e-07  Score=69.11  Aligned_cols=72  Identities=25%  Similarity=0.416  Sum_probs=64.0

Q ss_pred             ceEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEeccCCCc
Q 032170           23 MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPYN   94 (146)
Q Consensus        23 ~~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~~~~   94 (146)
                      .+++++.++|+|..|+.+|+++|.+++||..+.+++..+++.|.+.....++.+.|++.||.+++++....+
T Consensus         5 ~~~~~~~VgMsC~~Ca~~Iek~L~~~~GV~~v~vn~~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~~   76 (238)
T PLN02957          5 ELLTEFMVDMKCEGCVAAVKNKLETLEGVKAVEVDLSNQVVRVLGSSPVKAMTAALEQTGRKARLIGQGDPE   76 (238)
T ss_pred             cEEEEEEECccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEecCCHHHHHHHHHHcCCcEEEecCCCcc
Confidence            456678889999999999999999999999999999999999987778889999999999999888765443

>PRK10671 copA copper exporting ATPase; Provisional

Probab=98.56  E-value=2.6e-07  Score=80.15  Aligned_cols=65  Identities=20%  Similarity=0.436  Sum_probs=57.6

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      ++++++.| ||+|.+|+.+|+++|++++||.++++++.  +.+|.+..+.+.+.+.+++.||++++..
T Consensus         2 ~~~~~l~V~gmtC~~C~~~i~~al~~~~gv~~v~v~~~--~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   67 (834)
T PRK10671          2 SQTIDLTLDGLSCGHCVKRVKESLEQRPDVEQADVSIT--EAHVTGTASAEALIETIKQAGYDASVSH   67 (834)
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHhcCCCcceEEEeee--EEEEEecCCHHHHHHHHHhcCCcccccc
Confidence            35689999 99999999999999999999999999994  5566666789999999999999998754

>COG2217 ZntA Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=98.34  E-value=1.9e-06  Score=73.31  Aligned_cols=63  Identities=27%  Similarity=0.527  Sum_probs=56.6

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CC-HHHHHHHHHhcCCceEE
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VD-PNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~-~~~i~~~i~~~G~~~~~   87 (146)
                      .+..|.+ ||+|..|+.+|| +|++++||.++.+++.++++.|..+   .+ .+++...++..||.+..
T Consensus         2 ~~~~l~v~Gm~Ca~C~~~ie-~l~~~~gV~~~~vn~~t~~~~v~~~~~~~~~~~~~~~~v~~~gy~~~~   69 (713)
T COG2217           2 RETSLSVEGMTCAACASRIE-ALNKLPGVEEARVNLATERATVVYDPEEVDLPADIVAAVEKAGYSARL   69 (713)
T ss_pred             ceeEEeecCcCcHHHHHHHH-HHhcCCCeeEEEeecccceEEEEecccccccHHHHHHHHHhcCccccc
Confidence            3568999 999999999999 9999999999999999999998854   45 68999999999998765

>TIGR00003 copper ion binding protein

Probab=98.08  E-value=7.4e-05  Score=42.32  Aligned_cols=61  Identities=21%  Similarity=0.373  Sum_probs=50.5

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCc
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKR   84 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~   84 (146)
                      .+..+.+ ++.|..|...+++.+...+++....+++....+.+...   .+...+...+...|+.
T Consensus         2 ~~~~~~v~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~   66 (68)
T TIGR00003         2 QKFTVQVMSMTCQHCVDKIEKFVGELEGVSKVQVKLEKASVKVEFDAPQATEICIAEAILDAGYE   66 (68)
T ss_pred             cEEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEcCCCEEEEEeCCCCCCHHHHHHHHHHcCCC
Confidence            3457999 99999999999999999999999999999998887642   4667777777777764

This model describes an apparently copper-specific subfamily of the metal-binding domain HMA (Pfam family pfam00403). Closely related sequences outside this model include mercury resistance proteins and repeated domains of eukaryotic eukaryotic copper transport proteins. Members of this family are strictly prokaryotic. The model identifies both small proteins consisting of just this domain and N-terminal regions of cation (probably copper) transporting ATPases.

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.97  E-value=2.9e-05  Score=66.80  Aligned_cols=68  Identities=28%  Similarity=0.499  Sum_probs=62.2

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEeccC
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWPYV   91 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~~   91 (146)
                      .++.|.| ||.|.+|+.+|++.|.+++||.+++++...+++.|..+   ..+.++.+.|+..|+.+......
T Consensus       146 ~~i~L~v~g~~c~s~~~~ie~~l~~l~gV~~~sv~~~t~~~~V~~~~~~~~pr~i~k~ie~~~~~~~~~~~~  217 (951)
T KOG0207|consen  146 QKIYLDVLGMTCASCVSKIESILERLRGVKSFSVSLATDTAIVVYDPEITGPRDIIKAIEETGFEASVRPYG  217 (951)
T ss_pred             CcEEEEeecccccchhhhhHHHHhhccCeeEEEEeccCCceEEEecccccChHHHHHHHHhhcccceeeecc
Confidence            6789999 99999999999999999999999999999999998754   78999999999999998877643

>KOG0207 consensus Cation transport ATPase [Inorganic ion transport and metabolism]

Probab=97.68  E-value=0.00014  Score=62.70  Aligned_cols=67  Identities=21%  Similarity=0.356  Sum_probs=60.2

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEecc
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWPY   90 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   90 (146)
                      .+-.|.+ ||+|.+|++.|++.|++++||.++.+.+...+..+..+   .+++.+.+.+++.|+.+++...
T Consensus        69 ~~~~l~v~GmtC~scv~~i~~~l~~~~gv~~~~val~~~~~~v~~dp~v~s~~~~~e~ie~~gf~a~~i~~  139 (951)
T KOG0207|consen   69 SKCYLSVNGMTCASCVATIERNLRKIEGVESAVVALSASKAEVIYDPAVTSPDSIAESIEDLGFSAELIES  139 (951)
T ss_pred             ceeEEEecCceeHHHHHHHHHHhhccCCcceEEEEeeccceeEEECCcccCchhHHHHHHhcCccceehhc
Confidence            3668999 99999999999999999999999999999999988743   7889999999999999987653

>PRK10671 copA copper exporting ATPase; Provisional

Probab=97.58  E-value=0.00033  Score=61.16  Aligned_cols=64  Identities=27%  Similarity=0.484  Sum_probs=56.5

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEe
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ++.+.+ ||+|..|...+++.+.+++||.++.+++..+++.+.+..+.+++.+.+++.|+.+.+.
T Consensus       100 ~~~l~V~Gm~Ca~Ca~~Ie~~L~~~~GV~~a~vnl~t~~~~V~~~~s~~~I~~~I~~~Gy~a~~~  164 (834)
T PRK10671        100 SQQLLLSGMSCASCVSRVQNALQSVPGVTQARVNLAERTALVMGSASPQDLVQAVEKAGYGAEAI  164 (834)
T ss_pred             eEEEEeCCcCcHHHHHHHHHHHhcCCCceeeeeecCCCeEEEEccCCHHHHHHHHHhcCCCcccc
Confidence            567889 9999999999999999999999999999999888876567888888899999987643

>PRK11033 zntA zinc/cadmium/mercury/lead-transporting ATPase; Provisional

Probab=97.31  E-value=0.0015  Score=56.51  Aligned_cols=66  Identities=29%  Similarity=0.320  Sum_probs=54.0

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+..+.+ ||+|.+|..++++.+.+++||.++.+++...++.+..+ ...+++.+.+++.||.+...
T Consensus        52 ~~r~~l~V~Gm~C~sCa~~Ie~aL~~~~GV~~v~Vn~at~k~~V~~d~~~~~~I~~aI~~~Gy~a~~~  119 (741)
T PRK11033         52 GTRYSWKVSGMDCPSCARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESAVQKAGFSLRDE  119 (741)
T ss_pred             CceEEEEECCCCcHHHHHHHHHHHhcCCCeeeEEEEcCCCeEEEEecccchHHHHHHHHhcccccccc
Confidence            45677899 99999999999999999999999999999998877633 12266777888889876543

>TIGR02052 MerP mercuric transport protein periplasmic component

Probab=95.23  E-value=0.36  Score=29.28  Aligned_cols=63  Identities=24%  Similarity=0.357  Sum_probs=46.9

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhcCCceEE
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG---YVDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~   87 (146)
                      +..+.+ ++.|..|...++..+...+|+....++.......+..   ..+...+...+++.|+.+++
T Consensus        24 ~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~   90 (92)
T TIGR02052        24 TVTLEVPGMTCVACPITVETALQKVDGVSKAEVTFKTKLAVVTFDDEKTNVKALTEATTDAGYPSSL   90 (92)
T ss_pred             EEEEEECCeEcHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            456778 9999999999999999999988888887777655542   23555555666677776544

This model represents the periplasmic mercury (II) binding protein of the bacterial mercury detoxification system which passes mercuric ion to the MerT transporter for subsequent reduction to Hg(0) by the mercuric reductase MerA. MerP contains a distinctive GMTCXXC motif associated with metal binding. MerP is related to a larger family of metal binding proteins (pfam00403).

>COG1888 Uncharacterized protein conserved in archaea [Function unknown]

Probab=93.89  E-value=0.99  Score=28.72  Aligned_cols=66  Identities=14%  Similarity=0.247  Sum_probs=44.1

Q ss_pred             CceEEEEEE-cCc-CHhHHHHHHHHHhCCCCceEEEEe-----cC--CCEEEEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           22 PMQTVDIKV-KMD-CDGCERKVRNAVSSIRGAKSVEVN-----RK--QSRVTVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        22 ~~~~~~l~V-~m~-C~~C~~~i~~~L~~~~GV~~v~vd-----~~--~~~v~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+++.|.+ --+ -+.- --+-+.|.+++||+.|++.     .+  +-+++|.|. ++-++|.+.|++.|.-....
T Consensus         4 ~iRRlVLDvlKP~~~p~i-ve~A~~lskl~gVegVNItv~eiD~et~~~~itIeG~~ldydei~~~iE~~Gg~IHSi   79 (97)
T COG1888           4 GIRRLVLDVLKPHRGPTI-VELALELSKLEGVEGVNITVTEIDVETENLKITIEGTNLDYDEIEEVIEELGGAIHSI   79 (97)
T ss_pred             cceeeeeeecCCcCCCcH-HHHHHHHhhcCCcceEEEEEEEeeehhcceEEEEEcCCCCHHHHHHHHHHcCCeeeeh
Confidence            345667776 333 3333 3456668888998877754     33  334566675 89999999999999765543

>PF01206 TusA: Sulfurtransferase TusA; InterPro: IPR001455 SirA functions as a response regulator as part of a two-component system, where BarA is the sensor kinase

Probab=91.62  E-value=1.3  Score=26.26  Aligned_cols=53  Identities=9%  Similarity=0.071  Sum_probs=39.4

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEe
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ++.+ |+.|+...-+++++|.+++.         .+.+.|..+  .....|...++..|+...-+
T Consensus         2 ~lD~rg~~CP~Pll~~~~~l~~l~~---------G~~l~v~~d~~~~~~di~~~~~~~g~~~~~~   57 (70)
T PF01206_consen    2 TLDLRGLSCPMPLLKAKKALKELPP---------GEVLEVLVDDPAAVEDIPRWCEENGYEVVEV   57 (70)
T ss_dssp             EEECSS-STTHHHHHHHHHHHTSGT---------T-EEEEEESSTTHHHHHHHHHHHHTEEEEEE
T ss_pred             EEeCCCCCCCHHHHHHHHHHHhcCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEE
Confidence            5788 99999999999999999743         234555533  45688999999999975544

This system increases the expression of virulence genes and decreases the expression of motility genes []. BarA phosphorylates SirA, thereby activating the protein. Phosphorylated SirA directly activates virulence expression by interacting with hilA and hilC promoters, while repressing the flagellar regulon indirectly by binding to the csrB promoter, which in turn affects flagellar gene expression. Orthologues of SirA from Salmonella spp. can be found throughout proteobacteria, such as GacA in Psuedomonas spp., VarA in Vibrio cholerae, ExpA in Erwinia carotovora, LetA in Legionella pneumophila, and UvrY in Escherichia coli []. A sensor kinase for SirA is present in each of these organisms as well; the sensor kinase is known as BarA in E. coli and Salmonella spp., but has different names in other genera. In different species, SirA/BarA orthologues are required for virulence gene expression, exoenzyme and antibiotic production, motility, and biofilm formation. The structure of SirA consists of an alpha/beta sandwich with a beta-alpha-beta-alpha-beta(2) fold, comprising a mixed four-stranded beta-sheet stacked against two alpha-helices, both of which are nearly parallel to the strands of the beta-sheet []. Several uncharacterised bacterial proteins (73 to 81 amino-acid residues in length) that contain a well-conserved region in their N-terminal region show structural similarity to the SirA protein, including the E. coli protein YedF (P0AA31 from SWISSPROT), and other members of the UPF0033 family.; GO: 0016783 sulfurtransferase activity, 0008033 tRNA processing, 0005737 cytoplasm; PDB: 3LVJ_D 3LVK_B 1DCJ_A 3HZ7_A 1JDQ_A 1JE3_A 1PAV_A.

>PRK13748 putative mercuric reductase; Provisional

Probab=90.91  E-value=2  Score=35.91  Aligned_cols=64  Identities=23%  Similarity=0.443  Sum_probs=48.9

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhcCCceEEecc
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG--YVDPNKVLKKVKSTGKRAEFWPY   90 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~~   90 (146)
                      .+.+ ++.|..|..+++..+...+++....+++......+..  ..+...+...++..|+..++...
T Consensus         3 ~i~i~g~~C~~c~~~ie~~l~~~~gv~~a~~~~~~~~~~v~~~~~~~~~~i~~~i~~~g~~~~~~~~   69 (561)
T PRK13748          3 TLKITGMTCDSCAAHVKDALEKVPGVQSADVSYPKGSAQLAIEVGTSPDALTAAVAGLGYRATLADA   69 (561)
T ss_pred             EEEECCeecHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCeeeccCc
Confidence            4668 9999999999999999999998888888888766653  23556666666777777655443

>cd00371 HMA Heavy-metal-associated domain (HMA) is a conserved domain of approximately 30 amino acid residues found in a number of proteins that transport or detoxify heavy metals, for example, the CPx-type heavy metal ATPases and copper chaperones

Probab=89.11  E-value=1.8  Score=21.59  Aligned_cols=55  Identities=33%  Similarity=0.647  Sum_probs=36.1

Q ss_pred             EEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcC
Q 032170           28 IKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTG   82 (146)
Q Consensus        28 l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G   82 (146)
                      +.+ ++.|..|...++..+...+++.....++......+...  .+...+...+...+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   59 (63)
T cd00371           2 LSVEGMTCAGCVSKIEKALEKLPGVESVEVDLETGKATVEYDPEVSPEELLEAIEDAG   59 (63)
T ss_pred             eeECCeEcHHHHHHHHHHHhcCCCEeEEEEEccCCEEEEEECCCCCHHHHHHHHHHcC
Confidence            345 78899999999998888888877777766666555432  24444433344433

HMA domain contains two cysteine residues that are important in binding and transfer of metal ions, such as copper, cadmium, cobalt and zinc. In the case of copper, stoichiometry of binding is one Cu+ ion per binding domain. Repeats of the HMA domain in copper chaperone has been associated with Menkes/Wilson disease due to binding of multiple copper ions.

>PF02680 DUF211: Uncharacterized ArCR, COG1888; InterPro: IPR003831 This entry describes proteins of unknown function

Probab=89.06  E-value=4.4  Score=26.05  Aligned_cols=66  Identities=15%  Similarity=0.275  Sum_probs=44.3

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEe-----cCCCE--EEEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVN-----RKQSR--VTVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd-----~~~~~--v~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+++.|.| --+-++- -.+-++|.+++||..+++.     ..+..  ++|+|. ++.++|.++|++.|....-.
T Consensus         3 ~irRlVLDVlKP~~p~i-~e~A~~l~~~~gV~gVnitv~EvD~ete~lkitiEG~~id~d~i~~~Ie~~Gg~IHSI   77 (95)
T PF02680_consen    3 GIRRLVLDVLKPHEPSI-VELAKALSELEGVDGVNITVVEVDVETENLKITIEGDDIDFDEIKEAIEELGGVIHSI   77 (95)
T ss_dssp             SEEEEEEEEEEESSS-H-HHHHHHHHTSTTEEEEEEEEEEE-SSEEEEEEEEEESSE-HHHHHHHHHHTT-EEEEE
T ss_pred             ceeEEEEEeecCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEeCCCCHHHHHHHHHHcCCeEEee
Confidence            356777777 4454544 3566779999999988764     33333  355576 89999999999999765443

; PDB: 3BPD_I 2RAQ_F 2X3D_E.

>PRK11018 hypothetical protein; Provisional

Probab=85.86  E-value=5.8  Score=24.30  Aligned_cols=55  Identities=9%  Similarity=0.047  Sum_probs=41.4

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEe
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..++.+ |+.|+.-.-+.+++|.+++.         .+.+.|..+  .....|...+++.|+.+...
T Consensus         8 ~~~lD~rG~~CP~Pvl~~kk~l~~l~~---------G~~L~V~~d~~~a~~di~~~~~~~G~~v~~~   65 (78)
T PRK11018          8 DYRLDMVGEPCPYPAVATLEALPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI   65 (78)
T ss_pred             CeeEECCCCcCCHHHHHHHHHHHhCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence            357889 99999999999999998852         233444432  56678888999999987543

>cd03421 SirA_like_N SirA_like_N, a protein of unknown function with an N-terminal SirA-like domain

Probab=84.87  E-value=5.6  Score=23.32  Aligned_cols=52  Identities=17%  Similarity=0.199  Sum_probs=37.4

Q ss_pred             EEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           28 IKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        28 l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      +.+ |+.|+.-.-+++++| ++..         .+.+.|..+  .....|...+++.|+......
T Consensus         2 lD~rG~~CP~P~l~~k~al-~~~~---------g~~l~v~~d~~~s~~~i~~~~~~~G~~~~~~~   56 (67)
T cd03421           2 IDARGLACPQPVIKTKKAL-ELEA---------GGEIEVLVDNEVAKENVSRFAESRGYEVSVEE   56 (67)
T ss_pred             cccCCCCCCHHHHHHHHHH-hcCC---------CCEEEEEEcChhHHHHHHHHHHHcCCEEEEEe
Confidence            457 899999999999999 5532         234444433  455789999999999886443

The SirA, YedF, YeeD protein family is present in bacteria as well as archaea. SirA (also known as UvrY, and YhhP) belongs to a family of a two-component response regulators that controls secondary metabolism and virulence. The other member of this two-component system is a sensor kinase called BarA which phosphorylates SirA. A variety of microorganisms have similar proteins, all of which contain a common CPxP sequence motif in the N-terminal region. YhhP is suggested to be important for normal cell division and growth in rich nutrient medium. Moreover, despite a low primary sequence similarity, the YccP structure closely resembles the non-homologous C-terminal RNA-binding domain of E. coli translation initiation factor IF3. The signature CPxP motif serves to stabilize the N-terminal helix as part of the N-capping box and might be important in mRNA-binding.

>PF01883 DUF59: Domain of unknown function DUF59; InterPro: IPR002744 This family includes prokaryotic proteins of unknown function

Probab=82.53  E-value=3.1  Score=24.77  Aligned_cols=33  Identities=27%  Similarity=0.609  Sum_probs=21.4

Q ss_pred             eEEEEEEcCcCHhH------HHHHHHHHhCCCCceEEEE
Q 032170           24 QTVDIKVKMDCDGC------ERKVRNAVSSIRGAKSVEV   56 (146)
Q Consensus        24 ~~~~l~V~m~C~~C------~~~i~~~L~~~~GV~~v~v   56 (146)
                      .++.+.+.+..++|      ...|+++|..++||.+++|
T Consensus        34 ~~V~v~l~l~~~~~~~~~~l~~~i~~~l~~l~gv~~V~V   72 (72)
T PF01883_consen   34 GKVSVSLELPTPACPAAEPLREEIREALKALPGVKSVKV   72 (72)
T ss_dssp             CEEEEEE--SSTTHTTHHHHHHHHHHHHHTSTT-SEEEE
T ss_pred             CEEEEEEEECCCCchHHHHHHHHHHHHHHhCCCCceEeC
Confidence            34555554555554      4778899999999998875

The family also includes PhaH (O84984 from SWISSPROT) from Pseudomonas putida. PhaH forms a complex with PhaF (O84982 from SWISSPROT), PhaG (O84983 from SWISSPROT) and PhaI (O84985 from SWISSPROT), which hydroxylates phenylacetic acid to 2-hydroxyphenylacetic acid []. So members of this family may all be components of ring hydroxylating complexes.; PDB: 3LNO_C 3CQ3_A 3CQ2_D 2CU6_B 3CQ1_A 3UX3_B 3UX2_A 1WCJ_A 1UWD_A.

>cd03420 SirA_RHOD_Pry_redox SirA_RHOD_Pry_redox

Probab=80.35  E-value=9.3  Score=22.66  Aligned_cols=53  Identities=15%  Similarity=0.203  Sum_probs=39.6

Q ss_pred             EEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           28 IKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        28 l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      +.+ |+.|+.=.-+.+++|.+++.         .+.+.|..+  .....|....+..|+......
T Consensus         2 lD~rG~~CP~Pvl~~kkal~~l~~---------G~~l~V~~d~~~a~~di~~~~~~~G~~~~~~~   57 (69)
T cd03420           2 VDACGLQCPGPILKLKKEIDKLQD---------GEQLEVKASDPGFARDAQAWCKSTGNTLISLE   57 (69)
T ss_pred             cccCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEECCccHHHHHHHHHHHcCCEEEEEE
Confidence            567 89999999999999998852         234444432  566888999999999876443

SirA-like domain located within a multidomain protein of unknown function. Other domains include RHOD (rhodanese homology domain), and Pry_redox (pyridine nucleotide-disulphide oxidoreductase) as well as a C-terminal domain that corresponds to COG2210. This fold is referred to as a two-layered alpha/beta sandwich, structurally similar to that of translation initiation factor 3.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	146
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	2e-25
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	6e-21
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	1e-20
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	1e-17
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	2e-17
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	5e-12
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	5e-10
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	1e-09
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	2e-07
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	2e-07
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	2e-07
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	5e-07
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	6e-07
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	1e-06
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	1e-06
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	2e-06
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	2e-06
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	7e-05
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	2e-06
2kkh_A	95	Putative heavy metal transporter; zinc transport,	5e-06
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	5e-06
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	5e-06
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	9e-06
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	1e-05
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	1e-05
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	4e-05
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	1e-05
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	2e-05
2kyz_A	67	Heavy metal binding protein; structural genomics,	2e-05
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	3e-05
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	2e-04
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	4e-04
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	4e-04
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	4e-04
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	6e-04
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	7e-04

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98

 Score = 92.2 bits (229), Expect = 2e-25
 Identities = 17/75 (22%), Positives = 34/75 (45%)

Query: 14 TPRGKKRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNK 73
                +  + T++  V+M C  C   VR ++  + G + VEV+ +   V V   +   +
Sbjct: 9  ASDSGNQGTLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQE 68

Query: 74 VLKKVKSTGKRAEFW 88
          V   ++ TG++A   
Sbjct: 69 VQALLEGTGRQAVLK 83

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A Length = 68

 Score = 79.3 bits (196), Expect = 6e-21
 Identities = 15/66 (22%), Positives = 28/66 (42%), Gaps = 1/66 (1%)

Query: 23 MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTG 82
          M   +  V M C GC   V   ++ + G K  +++    +V +      + +L  +K TG
Sbjct: 1  MPKHEFSVDMTCGGCAEAVSRVLNKLGGVK-YDIDLPNKKVCIESEHSMDTLLATLKKTG 59

Query: 83 KRAEFW 88
          K   + 
Sbjct: 60 KTVSYL 65

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 222

 Score = 82.8 bits (204), Expect = 1e-20
 Identities = 18/122 (14%), Positives = 41/122 (33%), Gaps = 7/122 (5%)

Query: 19  KRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKV 78
                +     + M C+ C   ++  + ++ G  S+  + +Q  ++V   V P+ ++  +
Sbjct: 2   TNDTYEAT-YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL 60

Query: 79  KSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNV------VQALPSPNATDERLT 132
           ++ GK A        N  A   +               V      VQ   +    D  + 
Sbjct: 61  RNCGKDAIIRGAGKPNSSAVAILETFQKYTIDQKKDTAVRGLARIVQVGENKTLFDITVN 120

Query: 133 TL 134
            +
Sbjct: 121 GV 122

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1 Length = 249

 Score = 75.6 bits (185), Expect = 1e-17
 Identities = 17/104 (16%), Positives = 40/104 (38%), Gaps = 2/104 (1%)

Query: 19  KRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKV 78
                +     + M C+ C   ++  + ++ G  S+  + +Q  ++V   V P+ ++  +
Sbjct: 3   TNDTYEAT-YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL 61

Query: 79  KSTGKRAEFWPYVPYNLVAYPYVAQAYDKKAPSGYVKNVVQALP 122
           ++ GK A        N  A   + + + K          V+ L 
Sbjct: 62  RNCGKDAIIRGAGKPNSSAVA-ILETFQKYTIDQKKDTAVRGLA 104

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A Length = 73

 Score = 70.6 bits (173), Expect = 2e-17
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 23 MQTVDIKVKMDCDGCERKVRNAVSSI-RGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKST 81
          ++     V M C GC   V   ++ +      ++++ ++  V V   +  + +L+K+K T
Sbjct: 4  IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 63

Query: 82 GKRA 85
          GK  
Sbjct: 64 GKEV 67

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str} Length = 85

 Score = 57.1 bits (138), Expect = 5e-12
 Identities = 13/76 (17%), Positives = 26/76 (34%), Gaps = 1/76 (1%)

Query: 12 ETTPRGKKRKPMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVD 70
           ++ R         +   V+ M C  C   ++ A+       +V  +     V V G  D
Sbjct: 10 HSSGRENLYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSD 69

Query: 71 PNKVLKKVKSTGKRAE 86
             + + + + G   E
Sbjct: 70 AAHIAEIITAAGYTPE 85

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A Length = 64

 Score = 51.2 bits (123), Expect = 5e-10
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 25 TVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGK 83
          T+ + V  + C+ C   V  AV +     +V+V+    +VT+T  +   ++   + S G 
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGY 61

Query: 84 RAE 86
            E
Sbjct: 62 EVE 64

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A Length = 66

 Score = 50.3 bits (121), Expect = 1e-09
 Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 26 VDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKR 84
          + +KV+ M C+ C   V  A+  + G + VEV+ ++    V G  DP  +++ V+  G +
Sbjct: 2  LKLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYK 61

Query: 85 AE 86
          AE
Sbjct: 62 AE 63

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A Length = 69

 Score = 44.6 bits (106), Expect = 2e-07
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          M+   ++V+ M C  C + V  +V  + G  +V VN +  +V V+     V    +   +
Sbjct: 1  MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60

Query: 79 KSTG 82
          +  G
Sbjct: 61 EDQG 64

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori} Length = 66

 Score = 44.5 bits (106), Expect = 2e-07
 Identities = 12/63 (19%), Positives = 26/63 (41%), Gaps = 4/63 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT--GYVDPNKVLKKVK 79
          M+    +V  + C+ C  K+   V  I G   ++V+ ++  V V        + + + + 
Sbjct: 1  MKAT-FQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALL 59

Query: 80 STG 82
            G
Sbjct: 60 DAG 62

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus} Length = 73

 Score = 44.7 bits (106), Expect = 2e-07
 Identities = 15/65 (23%), Positives = 35/65 (53%), Gaps = 3/65 (4%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKST 81
          ++ + +++  + C  C  +V+ A+    GAK  +V+  ++ V      D +K +K V++ 
Sbjct: 4  VEKIVLELSGLSCHHCVARVKKALEEA-GAKVEKVDLNEAVVAGNK-EDVDKYIKAVEAA 61

Query: 82 GKRAE 86
          G +A+
Sbjct: 62 GYQAK 66

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis} Length = 71

 Score = 43.8 bits (104), Expect = 5e-07
 Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          M+ + ++V+ M C  C   + ++V  + G + V+V   +  V VT     V    ++  +
Sbjct: 4  MEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVI 63

Query: 79 KSTGKRAE 86
          +  G   +
Sbjct: 64 EDQGYDVQ 71

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A Length = 75

 Score = 43.5 bits (103), Expect = 6e-07
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          + +V I V+ M C+ C   +   +  + G   ++V+ ++   T+        P  + + +
Sbjct: 1  VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 60

Query: 79 KSTG 82
             G
Sbjct: 61 DDMG 64

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP} Length = 71

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 22 PMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKK 77
          P++T  ++V  M C  C   +  A+  ++G     V     R+TVT     V    + ++
Sbjct: 1  PLKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQER 60

Query: 78 VKSTG 82
          + + G
Sbjct: 61 IAALG 65

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} Length = 74

 Score = 42.7 bits (101), Expect = 1e-06
 Identities = 14/64 (21%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          M+ + + V  M C  C   V  A+ ++ G     V   Q+R  V      V    + +++
Sbjct: 1  MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEI 60

Query: 79 KSTG 82
          +  G
Sbjct: 61 EDAG 64

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A Length = 72

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
           QTV + V  M C  C   V+ A+S + G   V+V  +  +  VT         K+ K  
Sbjct: 2  TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKAT 61

Query: 79 KSTG 82
             G
Sbjct: 62 ADAG 65

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 43.9 bits (104), Expect = 2e-06
 Identities = 13/80 (16%), Positives = 27/80 (33%), Gaps = 4/80 (5%)

Query: 11  FETTPRGKKRKPMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT--- 66
           FE             +++ +  M C  C   + + ++   G     V    S+  V    
Sbjct: 67  FEAAVMEDYAGSDGNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDP 126

Query: 67  GYVDPNKVLKKVKSTGKRAE 86
             + P  ++K ++  G  A 
Sbjct: 127 EIIGPRDIIKIIEEIGFHAS 146

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} Length = 149

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 11/63 (17%), Positives = 24/63 (38%), Gaps = 4/63 (6%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVK 79
          Q   +++K M C  C   +   +    G  SV V     +  +      + P ++ + ++
Sbjct: 4  QKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQ 63

Query: 80 STG 82
            G
Sbjct: 64 DLG 66

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A Length = 79

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 11/64 (17%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          + +V I V+ M C+ C   +   +  + G   ++V+ ++   T+        P  + + +
Sbjct: 7  VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66

Query: 79 KSTG 82
             G
Sbjct: 67 DDMG 70

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana} Length = 95

 Score = 41.7 bits (98), Expect = 5e-06
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 4/73 (5%)

Query: 18 KKRKPMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNK 73
          KK K +Q     V  + C      + N + S+ G K   V      V V      + P +
Sbjct: 10 KKVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQ 69

Query: 74 VLKKVKSTGKRAE 86
          + K +      A 
Sbjct: 70 IAKALNEARLEAN 82

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A Length = 69

 Score = 41.2 bits (97), Expect = 5e-06
 Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)

Query: 32 MDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKSTGKRAE 86
          M CD C   V+ A+  + G +S  V+  +  +++ +     P+ +   V   G +A 
Sbjct: 9  MTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKAT 65

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A Length = 71

 Score = 40.8 bits (96), Expect = 5e-06
 Identities = 17/66 (25%), Positives = 34/66 (51%), Gaps = 3/66 (4%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVN--RKQSRVTVTGYVDPNKVLKKVKS 80
          QT++++++ M C  C   +  A++ + G +S +VN   +Q+ V+  G   P  +   V+ 
Sbjct: 3  QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVER 62

Query: 81 TGKRAE 86
           G  A 
Sbjct: 63 AGYHAR 68

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 42.3 bits (99), Expect = 9e-06
 Identities = 15/79 (18%), Positives = 31/79 (39%), Gaps = 4/79 (5%)

Query: 12  ETTPRGKKRKPMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---G 67
            + PR + +    T  I +  M C  C   +   +S + G + + V+  +   TV     
Sbjct: 110 GSPPRNQVQGTCSTTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPA 169

Query: 68  YVDPNKVLKKVKSTGKRAE 86
            + P ++   ++  G  A 
Sbjct: 170 VISPEELRAAIEDMGFEAS 188

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens} Length = 202

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 10/75 (13%), Positives = 30/75 (40%), Gaps = 4/75 (5%)

Query: 13 TTPRGKKRKPMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GY 68
          +   G +   + T+ +++  M C  C   +   +  + G +S++V+ +     V      
Sbjct: 9  SETLGHQGSHVVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSC 68

Query: 69 VDPNKVLKKVKSTGK 83
            P  + + +++   
Sbjct: 69 TSPVALQRAIEALPP 83

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 41.6 bits (98), Expect = 1e-05
 Identities = 12/69 (17%), Positives = 26/69 (37%), Gaps = 4/69 (5%)

Query: 22  PMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKK 77
             +  +  ++ M C  C  ++   ++ I G  +  VN     VTV         + + + 
Sbjct: 72  VTEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEA 131

Query: 78  VKSTGKRAE 86
           V   G + +
Sbjct: 132 VDKLGYKLK 140

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A Length = 151

 Score = 40.1 bits (94), Expect = 4e-05
 Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
           + + ++V  M C  C  ++   +  + G     VN     V V           + +K+
Sbjct: 5  QKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKI 64

Query: 79 KSTG 82
          +  G
Sbjct: 65 EKLG 68

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A Length = 71

 Score = 40.1 bits (94), Expect = 1e-05
 Identities = 14/55 (25%), Positives = 20/55 (36%)

Query: 32 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE 86
          + C  C  K    V  I G     VN   S++TVTG     +V +       +  
Sbjct: 12 LSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEASIQQVEQAGAFEHLKII 66

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A Length = 72

 Score = 39.6 bits (93), Expect = 2e-05
 Identities = 15/64 (23%), Positives = 25/64 (39%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
           Q   I +  M C+ C + +   +S   G KS+ V+   S  TV        P  +   +
Sbjct: 2  TQETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAI 61

Query: 79 KSTG 82
          +  G
Sbjct: 62 EDMG 65

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima} Length = 67

 Score = 39.8 bits (93), Expect = 2e-05
 Identities = 16/61 (26%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKST 81
          M+ V + V  + C+ C+ ++  A+  + G K+ EV+ ++ +V V    + + VLKK++  
Sbjct: 1  MRYV-LYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVE-TENLDSVLKKLEEI 57

Query: 82 G 82
           
Sbjct: 58 D 58

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1 Length = 68

 Score = 36.9 bits (86), Expect = 2e-04
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 32 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVKSTGKRAE 86
          M C+ C  ++  AV  I G K V+V  K+ +  V      V   ++ + +   G +AE
Sbjct: 9  MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAE 66

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A Length = 84

 Score = 36.2 bits (84), Expect = 4e-04
 Identities = 10/65 (15%), Positives = 29/65 (44%), Gaps = 4/65 (6%)

Query: 22 PMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKK 77
              + +KV+ M C  C   +   +  ++G + ++V+      T+      +   ++ K+
Sbjct: 7  GEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQ 66

Query: 78 VKSTG 82
          +++ G
Sbjct: 67 IEAMG 71

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A Length = 73

 Score = 35.9 bits (83), Expect = 4e-04
 Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 2/61 (3%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVD-PNKVLKKVKST 81
               KV  MDC  C RKV NAV  + G   V+V     ++ V    D   +V   ++  
Sbjct: 3  TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKA 62

Query: 82 G 82
          G
Sbjct: 63 G 63

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A Length = 90

 Score = 36.3 bits (84), Expect = 4e-04
 Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 4/62 (6%)

Query: 25 TVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVKS 80
          T    +  M C  C   + + +S+++   S+ V+ +     V      V P  + K +++
Sbjct: 4  TATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEA 63

Query: 81 TG 82
            
Sbjct: 64 VS 65

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B Length = 72

 Score = 35.7 bits (83), Expect = 6e-04
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT--GYVDPNKVLKKVKS 80
          + V + V  M C  C   +   + +++G    +++   +   VT    V  + + + ++ 
Sbjct: 2  REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIED 61

Query: 81 TGKRAE 86
           G   E
Sbjct: 62 CGFDCE 67

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus} Length = 723

 Score = 37.5 bits (88), Expect = 7e-04
 Identities = 15/69 (21%), Positives = 28/69 (40%), Gaps = 5/69 (7%)

Query: 22 PMQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKK 77
          PM+   ++V  M C  C + +  AV S+ G + V VN       +      +D   + + 
Sbjct: 1  PME-RTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRV 59

Query: 78 VKSTGKRAE 86
          ++  G    
Sbjct: 60 IEDLGYGVV 68

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	146
3iwl_A	68	Copper transport protein ATOX1; beta-alpha-beta-BE	99.65
3dxs_X	74	Copper-transporting ATPase RAN1; CXXC motif, ferre	99.58
4a4j_A	69	Pacszia, cation-transporting ATPase PACS; hydrolas	99.56
3fry_A	73	Probable copper-exporting P-type ATPase A; transpo	99.54
1cc8_A	73	Protein (metallochaperone ATX1); copper transport,	99.53
2crl_A	98	Copper chaperone for superoxide dismutase; SOD1, f	99.45
2l3m_A	71	Copper-ION-binding protein; structural genomics, c	99.41
2xmm_A	64	SSR2857 protein, ATX1; metal transport, copper hom	99.39
2k2p_A	85	Uncharacterized protein ATU1203; putative metal-bi	99.39
2roe_A	66	Heavy metal binding protein; NMR {Thermus thermoph	99.39
2xmw_A	71	PACS-N, cation-transporting ATPase PACS; hydrolase	99.38
1osd_A	72	MERP, hypothetical protein MERP; mercury resistanc	99.38
1mwy_A	73	ZNTA; open-faced beta-sandwich fold, beta-alpha-be	99.37
3cjk_B	75	Copper-transporting ATPase 1; HAH1, ATP7B, menkes	99.36
1aw0_A	72	Menkes copper-transporting ATPase; copper-binding	99.35
1q8l_A	84	Copper-transporting ATPase 1; metal binding protei	99.34
2qif_A	69	Copper chaperone COPZ; tetranuclear Cu(I) cluster;	99.34
1opz_A	76	Potential copper-transporting ATPase; mutation, fo	99.33
1y3j_A	77	Copper-transporting ATPase 1; ferrodoxin-like fold	99.33
2g9o_A	90	Copper-transporting ATPase 1; menkes disease, solu	99.32
1kvi_A	79	Copper-transporting ATPase 1; menkes, Cu-protein,	99.32
1fvq_A	72	Copper-transporting ATPase; APO-CCC2A, hydrolase;	99.31
1cpz_A	68	Protein (COPZ); copper chaperone, metal transport,	99.31
2kt2_A	69	Mercuric reductase; nmera, MERA, HMA domain, mercu	99.3
1yg0_A	66	COP associated protein; open-faced beta-sandwich,	99.29
2kkh_A	95	Putative heavy metal transporter; zinc transport,	99.28
1jww_A	80	Potential copper-transporting ATPase; beta-alpha-b	99.27
2ldi_A	71	Zinc-transporting ATPase; metal homeostasis, metal	99.26
2kyz_A	67	Heavy metal binding protein; structural genomics,	99.26
1yjr_A	75	Copper-transporting ATPase 1; metallochaperone, pr	99.25
2ofg_X	111	Zinc-transporting ATPase; ferredoxin-like fold, be	99.24
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.21
1qup_A	222	Superoxide dismutase 1 copper chaperone; two domai	99.18
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	99.18
2aj0_A	71	Probable cadmium-transporting ATPase; ferrodoxin-l	99.13
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	99.11
1jk9_B	249	CCS, copper chaperone for superoxide dismutase; pr	99.09
2ew9_A	149	Copper-transporting ATPase 2; copper trafficking,	99.06
1p6t_A	151	Potential copper-transporting ATPase; COPA, P-type	98.8
2rop_A	202	Copper-transporting ATPase 2; wilson protein, mobi	98.78
3j09_A	723	COPA, copper-exporting P-type ATPase A; copper tra	98.71
1jdq_A	98	TM006 protein, hypothetical protein TM0983; struct	91.67
3bpd_A	100	Uncharacterized protein; heptamer, Mg+2 ION, PSI-2	90.46
2x3d_A	96	SSO6206; unknown function; 2.70A {Sulfolobus solfa	89.29
2raq_A	97	Conserved protein MTH889; alpha-beta protein, stru	88.95
3lvj_C	82	Sulfurtransferase TUSA; protein-protein complex, s	87.26
3cq1_A	103	Putative uncharacterized protein TTHB138; DTDP-4-k	85.83
1je3_A	97	EC005, hypothetical 8.6 kDa protein in AMYA-FLIE i	85.09
3hz7_A	87	Uncharacterized protein; alpha-beta protein, struc	83.72
2jsx_A	95	Protein NAPD; TAT, proofreading, cytoplasm, chaper	83.58
1uwd_A	103	Hypothetical protein TM0487; similar to PAAD prote	82.89

>3iwl_A Copper transport protein ATOX1; beta-alpha-beta-BETA-alpha-beta, cisplatin, platinum, chaperone, ION transport, metal-binding, metal transport; HET: TCE; 1.60A {Homo sapiens} SCOP: d.58.17.1 PDB: 1fe4_A* 1fee_A* 1tl4_A 1tl5_A 2k1r_B 1fe0_A* 3iwx_A 3cjk_A

Probab=99.65  E-value=9.6e-16  Score=92.05  Aligned_cols=67  Identities=21%  Similarity=0.470  Sum_probs=62.2

Q ss_pred             ceEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEecc
Q 032170           23 MQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPY   90 (146)
Q Consensus        23 ~~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~   90 (146)
                      |.+.+|.|||+|.+|+.+|+++|++++|| ++++|+..++++|.+..++++|.++|+++||.+.+++.
T Consensus         1 m~~~~~~vgm~C~~C~~~i~~~l~~~~gV-~v~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~~   67 (68)
T 3iwl_A            1 MPKHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLGL   67 (68)
T ss_dssp             -CEEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTCSCEEEEEC
T ss_pred             CceEEEEECcCcHHHHHHHHHHHHcCCCe-EEEEEcCCCEEEEEecCCHHHHHHHHHHcCCceEecCC
Confidence            45678888999999999999999999999 99999999999999989999999999999999998873

>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0

Probab=99.58  E-value=2e-14  Score=87.17  Aligned_cols=67  Identities=24%  Similarity=0.415  Sum_probs=62.2

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      |++++|.| ||+|.+|+.+|+++|++++||.++.+|+..++++|..+   ++.++|.++|+++||+++++.
T Consensus         1 M~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   71 (74)
T 3dxs_X            1 MRKIQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQNRADVVFDPNLVKEEDIKEEIEDAGFEAEILA   71 (74)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEEEEE
T ss_pred             CcEEEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceEEcc
Confidence            56789999 99999999999999999999999999999999999853   689999999999999998875

>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A

Probab=99.56  E-value=4e-14  Score=84.61  Aligned_cols=64  Identities=27%  Similarity=0.548  Sum_probs=59.7

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEE--ecCCHHHHHHHHHhcCCceEE
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT--GYVDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~--~~~~~~~i~~~i~~~G~~~~~   87 (146)
                      ++++|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|.  +..+.++|.++|+++||++++
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~   68 (69)
T 4a4j_A            2 QTINLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV   68 (69)
T ss_dssp             EEEEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHTTCEEEE
T ss_pred             CEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHcCCceEe
Confidence            4678999 999999999999999999999999999999999998  458999999999999999875

>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}

Probab=99.54  E-value=3.9e-14  Score=86.02  Aligned_cols=66  Identities=23%  Similarity=0.443  Sum_probs=62.4

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .|.+.+|.| ||+|.+|+.+|+++|++ +||..+.+|+..++++|..+ +.++|.++|+++||.+.+.+
T Consensus         3 ~m~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~-~~~~i~~~i~~~Gy~~~~~~   69 (73)
T 3fry_A            3 SVEKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKE-DVDKYIKAVEAAGYQAKLRS   69 (73)
T ss_dssp             CCEEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGG-GHHHHHHHHHHTTCEEEECC
T ss_pred             ccEEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEEC-CHHHHHHHHHHcCCceEecC
Confidence            477889999 99999999999999999 99999999999999999988 99999999999999998876

>1cc8_A Protein (metallochaperone ATX1); copper transport, mercury coordination, metal transport; 1.02A {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1cc7_A 1fd8_A 1fes_A 2ggp_A 3k7r_A

Probab=99.53  E-value=1.2e-13  Score=83.58  Aligned_cols=67  Identities=21%  Similarity=0.412  Sum_probs=62.7

Q ss_pred             ceEEEEEEcCcCHhHHHHHHHHHhCCC-CceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 032170           23 MQTVDIKVKMDCDGCERKVRNAVSSIR-GAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        23 ~~~~~l~V~m~C~~C~~~i~~~L~~~~-GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      +.+.+|+|.|+|.+|+.+|+++|.+++ ||.++++|+..++++|.+..+.++|.+.|+++||++.++.
T Consensus         4 m~~~~~~v~m~C~~C~~~ie~~l~~~~~GV~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~~~   71 (73)
T 1cc8_A            4 IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVRSGK   71 (73)
T ss_dssp             CEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEEEEE
T ss_pred             ceEEEEEEeeECHHHHHHHHHHHHhCCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCCceeee
Confidence            567788999999999999999999999 9999999999999999988899999999999999988765

>2crl_A Copper chaperone for superoxide dismutase; SOD1, familial ALS, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=9.4e-13  Score=84.62  Aligned_cols=71  Identities=24%  Similarity=0.417  Sum_probs=65.0

Q ss_pred             CceEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEeccCC
Q 032170           22 PMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVP   92 (146)
Q Consensus        22 ~~~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~~   92 (146)
                      .+.+++|+|.|+|.+|+.+|+++|.+++||.++.+|+..++++|.+..+.++|.+.|+++||++.++..+.
T Consensus        17 ~~~~~~l~V~m~C~~C~~~Ie~aL~~l~GV~~v~vdl~~~~~~V~~~~~~~~i~~~i~~~Gy~~~~~~~~~   87 (98)
T 2crl_A           17 TLCTLEFAVQMTCQSCVDAVRKSLQGVAGVQDVEVHLEDQMVLVHTTLPSQEVQALLEGTGRQAVLKGMGS   87 (98)
T ss_dssp             CCEEEEEEECCCSHHHHHHHHHTTTTCTTCCEEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEESCC
T ss_pred             cceEEEEEEeeECHHHHHHHHHHHHcCCCceEEEEECCCCEEEEEEeCCHHHHHHHHHHhCCceEEccCCC
Confidence            45677888899999999999999999999999999999999999988899999999999999999887543

>2l3m_A Copper-ION-binding protein; structural genomics, center for structural genomics of infec diseases, csgid, metal binding protein; NMR {Bacillus anthracis}

Probab=99.41  E-value=3.5e-12  Score=75.82  Aligned_cols=64  Identities=22%  Similarity=0.438  Sum_probs=58.2

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCce
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~   85 (146)
                      .|.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.|.+.|+++||.+
T Consensus         3 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   70 (71)
T 2l3m_A            3 AMEQLTLQVEGMSCGHCVNAIESSVKELNGVEQVKVQLAEGTVEVTIDSSVVTLKDIVAVIEDQGYDV   70 (71)
T ss_dssp             SEEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTSCHHHHHHHHHHTTCEE
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCC
Confidence            467789999 99999999999999999999999999999999998743   67889999999999975

>2xmm_A SSR2857 protein, ATX1; metal transport, copper homeostasis, chaperone, P-type atpas; 1.65A {Synechocystis SP} PDB: 2xmv_A 1sb6_A 2xmj_A 2xmk_A 2xmt_A 2xmu_A

Probab=99.39  E-value=8.9e-13  Score=76.70  Aligned_cols=60  Identities=22%  Similarity=0.462  Sum_probs=56.3

Q ss_pred             EEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCce
Q 032170           26 VDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        26 ~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~   85 (146)
                      ..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|.+..+.+.|.+.|+++||.+
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~G~~~   63 (64)
T 2xmm_A            3 IQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGYEV   63 (64)
T ss_dssp             EEEECTTCCSHHHHHHHHHHHHHHCTTCEEEECTTTCEEEEECSSCHHHHHHHHHHTTCCC
T ss_pred             EEEEECCcCcHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence            47999 9999999999999999999999999999999999997788899999999999975

>2k2p_A Uncharacterized protein ATU1203; putative metal-binding domain ATU1203, ontario centre for ST proteomics, structural genomics; NMR {Agrobacterium tumefaciens str}

Probab=99.39  E-value=7.3e-13  Score=82.98  Aligned_cols=67  Identities=16%  Similarity=0.293  Sum_probs=58.7

Q ss_pred             CCCCceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCce
Q 032170           19 KRKPMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        19 ~~~~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~   85 (146)
                      ....+.+.+|.| ||+|..|+.+|+++|.+++||.++++|+..++++|....+.+.|.+.|+++||.+
T Consensus        17 ~~~~~~~~~l~V~Gm~C~~C~~~Ie~aL~~~~GV~~v~v~l~~~~~~V~~~~~~~~i~~~i~~~Gy~~   84 (85)
T 2k2p_A           17 LYFQGAGLSFHVEDMTCGHCAGVIKGAIEKTVPGAAVHADPASRTVVVGGVSDAAHIAEIITAAGYTP   84 (85)
T ss_dssp             -----CEEEEECTTCCHHHHHHHHHHHHHHHSTTCEEEEETTTTEEEEESCCCHHHHHHHHHHTTCCC
T ss_pred             ccccccEEEEEECCCCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEecCCHHHHHHHHHHcCCCC
Confidence            334567788999 9999999999999999999999999999999999998788999999999999974

>2roe_A Heavy metal binding protein; NMR {Thermus thermophilus} PDB: 2rog_A

Probab=99.39  E-value=9.1e-13  Score=77.75  Aligned_cols=61  Identities=31%  Similarity=0.582  Sum_probs=56.5

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   87 (146)
                      .|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|.+..+.+.|.+.|+++||.+..
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~i~~~i~~~Gy~~~~   64 (66)
T 2roe_A            3 KLKVEGMTCNHCVMAVTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEV   64 (66)
T ss_dssp             CEEEECCCSHHHHHHHHHHHHTSTTCCCEEECSSSCBEEECSCCCHHHHHHHHHTTTCEEEE
T ss_pred             EEEECCeEcHHHHHHHHHHHHcCCCeEEEEEEeCCCEEEECCCCCHHHHHHHHHHcCCCcEe
Confidence            5889 999999999999999999999999999999999996557889999999999998764

>2xmw_A PACS-N, cation-transporting ATPase PACS; hydrolase, Cu(I)-binding, trafficking; 1.80A {Synechocystis SP} PDB: 2gcf_A

Probab=99.38  E-value=6.4e-12  Score=74.44  Aligned_cols=64  Identities=23%  Similarity=0.468  Sum_probs=57.4

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEE
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~   87 (146)
                      ++..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+  .+.+.|.+.|+++||.+.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~   69 (71)
T 2xmw_A            3 QTINLQLEGMRCAACASSIERAIAKVPGVQSCQVNFALEQAVVSYHGETTPQILTDAVERAGYHARV   69 (71)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEC---CHHHHHHHHHHHTCEEEE
T ss_pred             cEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCHHHHHHHHHHcCCCcee
Confidence            5678999 99999999999999999999999999999999998754  6788899999999998764

>1osd_A MERP, hypothetical protein MERP; mercury resistance, metal binding protein, perisplasm, structural genomics; 2.00A {Cupriavidus metallidurans} SCOP: d.58.17.1 PDB: 1afi_A 1afj_A 2hqi_A

Probab=99.38  E-value=5e-12  Score=75.24  Aligned_cols=65  Identities=28%  Similarity=0.425  Sum_probs=58.7

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEE
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~   87 (146)
                      +++..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+   .+.+.|.+.|+++||.+.+
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   70 (72)
T 1osd_A            2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSV   70 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEE
T ss_pred             ceEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHhcCCCeEe
Confidence            45678999 99999999999999999999999999999999999743   5788999999999998765

>1mwy_A ZNTA; open-faced beta-sandwich fold, beta-alpha-beta-BETA-alpha- beta, hydrolase; NMR {Escherichia coli} SCOP: d.58.17.1 PDB: 1mwz_A

Probab=99.37  E-value=8.3e-12  Score=74.89  Aligned_cols=66  Identities=27%  Similarity=0.324  Sum_probs=58.5

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecC-CHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYV-DPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~-~~~~i~~~i~~~G~~~~~~   88 (146)
                      |.++.|.| ||+|.+|+.+|+++|.+++||..+.+|+..++++|..+. ..+.|.+.|+++||.+...
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gV~~~~v~~~~~~~~v~~~~~~~~~i~~~i~~~Gy~~~~~   69 (73)
T 1mwy_A            2 GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRDE   69 (73)
T ss_dssp             CEEEEEEEESCCSTTHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCEEEEC
T ss_pred             CeEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCHHHHHHHHHHcCCccccc
Confidence            66788999 999999999999999999999999999999999998552 3678899999999987643

>3cjk_B Copper-transporting ATPase 1; HAH1, ATP7B, menkes disease, metal homeostasis, chaperone, ION transport, metal- binding, alternative splicing; 1.80A {Homo sapiens} PDB: 2k1r_A

Probab=99.36  E-value=1.3e-11  Score=74.22  Aligned_cols=66  Identities=18%  Similarity=0.400  Sum_probs=59.3

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.|.+.|+++||.+.+..
T Consensus         2 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   71 (75)
T 3cjk_B            2 NSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   71 (75)
T ss_dssp             EEEEEEECCCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCCEEEEE
T ss_pred             cEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEeec
Confidence            3568999 99999999999999999999999999999999999853   578899999999999887654

>1aw0_A Menkes copper-transporting ATPase; copper-binding domain, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 2aw0_A

Probab=99.35  E-value=7.7e-12  Score=74.39  Aligned_cols=65  Identities=25%  Similarity=0.381  Sum_probs=58.3

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEe
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ++..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+   .+.+.|.+.|+++||.+.+.
T Consensus         3 ~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   71 (72)
T 1aw0_A            3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCHHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred             eEEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCcCCHHHHHHHHHHCCCCcEeC
Confidence            3568999 99999999999999999999999999999999999854   57889999999999987653

>1q8l_A Copper-transporting ATPase 1; metal binding protein; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1s6o_A 1s6u_A

Probab=99.34  E-value=7.2e-12  Score=77.56  Aligned_cols=68  Identities=16%  Similarity=0.346  Sum_probs=61.0

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEecc
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWPY   90 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   90 (146)
                      ..++.|.| ||+|.+|+.+|+++|.+++||..+++|+..++++|..+   .+.+.|.+.|+++||.+.+...
T Consensus         8 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   79 (84)
T 1q8l_A            8 EVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKKQ   79 (84)
T ss_dssp             CEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSCC
T ss_pred             ceEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEecCC
Confidence            45678999 99999999999999999999999999999999999853   5788999999999999876653

>2qif_A Copper chaperone COPZ; tetranuclear Cu(I) cluster; 1.50A {Bacillus subtilis} SCOP: d.58.17.1 PDB: 3i9z_A 1k0v_A 1p8g_A

Probab=99.34  E-value=1.5e-11  Score=71.93  Aligned_cols=63  Identities=24%  Similarity=0.457  Sum_probs=56.6

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCce
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~   85 (146)
                      |.+..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+   .+.+.|.+.|+++||.+
T Consensus         1 m~~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   67 (69)
T 2qif_A            1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCc
Confidence            34668999 99999999999999999999999999999999998743   57888999999999865

>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A

Probab=99.33  E-value=1.4e-11  Score=73.81  Aligned_cols=68  Identities=16%  Similarity=0.335  Sum_probs=60.4

Q ss_pred             CCceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEe
Q 032170           21 KPMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        21 ~~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..+++.|..+   .+.+.|.+.|+++||.+.++
T Consensus         3 ~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   74 (76)
T 1opz_A            3 SEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHVVIE   74 (76)
T ss_dssp             CCCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHTCEEECC
T ss_pred             ccceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHCCCceecC
Confidence            3467788999 99999999999999999999999999999999998743   57889999999999987654

>1y3j_A Copper-transporting ATPase 1; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta structure, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1y3k_A

Probab=99.33  E-value=4.7e-12  Score=76.78  Aligned_cols=67  Identities=18%  Similarity=0.274  Sum_probs=60.7

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      |+++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.|.+.|+++||.+.++.
T Consensus         2 m~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   72 (77)
T 1y3j_A            2 SSKCYIQVTGMTCASCVANIERNLRREEGIYSILVALMAGKAEVRYNPAVIQPPMIAEFIRELGFGATVIE   72 (77)
T ss_dssp             CEEEEEEESCGGGCSHHHHHHHHHTTSSSEEECCCBTTTTBEEEEECTTTSCHHHHHHHHHHHTSCEEEES
T ss_pred             CEEEEEEECCeeCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCceEECC
Confidence            67789999 99999999999999999999999999999999999753   578899999999999887654

>2g9o_A Copper-transporting ATPase 1; menkes disease, solution structure, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens} PDB: 2ga7_A

Probab=99.32  E-value=1.1e-11  Score=78.10  Aligned_cols=67  Identities=18%  Similarity=0.298  Sum_probs=59.4

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhc---CCceEEecc
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKST---GKRAEFWPY   90 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~---G~~~~~~~~   90 (146)
                      .++.|.| ||+|.+|+.+|+++|.+++||.++++++..++++|..+   ++.+.|.+.|+++   ||++.++..
T Consensus         3 ~~~~l~v~Gm~C~~C~~~Ie~~L~~~~GV~~v~v~l~~~~~~V~~~~~~~~~~~i~~~i~~~g~Ggy~~~~~~~   76 (90)
T 2g9o_A            3 STATFIIDGMHCKSCVSNIESTLSALQYVSSIVVSLENRSAIVVYNASSVTPESLRKAIEAVSPGLYRVSITSE   76 (90)
T ss_dssp             EEEEEEEESCCHHHHHHHHHHHHTTCTTEEEEEEETTTTEEEEEECCSSCCTHHHHHHHHTTSTTTCEEECCCC
T ss_pred             cEEEEEECCcCCHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHhccCCCeEEEEeCC
Confidence            4568999 99999999999999999999999999999999999743   5778999999999   598877663

>1kvi_A Copper-transporting ATPase 1; menkes, Cu-protein, hydrolase; NMR {Homo sapiens} SCOP: d.58.17.1 PDB: 1kvj_A

Probab=99.32  E-value=9.8e-12  Score=75.60  Aligned_cols=68  Identities=18%  Similarity=0.388  Sum_probs=60.7

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .+.++.|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+   .+.+.|.+.|+++||.+.+..
T Consensus         6 ~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~   77 (79)
T 1kvi_A            6 GVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   77 (79)
T ss_dssp             TCEEEEEEECCCCSTTTHHHHHHHHHHSSSCCCEEEEGGGTEEEEEECTTTCCHHHHHHHHHHHCCCEEECC
T ss_pred             CcEEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHCCCceEecC
Confidence            356788999 99999999999999999999999999999999999753   577899999999999887654

>1fvq_A Copper-transporting ATPase; APO-CCC2A, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.58.17.1 PDB: 1fvs_A 2ggp_B

Probab=99.31  E-value=1.9e-11  Score=72.68  Aligned_cols=65  Identities=17%  Similarity=0.369  Sum_probs=58.8

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      +..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+  .+.+.|.+.|++.||.+.++.
T Consensus         3 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~~~~~   70 (72)
T 1fvq_A            3 EVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEECSCCSHHHHHHHHHHHHTSSSEEEECCBTTTTEEEEEECTTSCHHHHHHHHHHHTCCEEEEE
T ss_pred             EEEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCHHHHHHHHHHCCCceEEcc
Confidence            467999 99999999999999999999999999999999998753  577899999999999988764

>1cpz_A Protein (COPZ); copper chaperone, metal transport, gene regulation; NMR {Enterococcus hirae} SCOP: d.58.17.1

Probab=99.31  E-value=1.6e-11  Score=72.03  Aligned_cols=61  Identities=28%  Similarity=0.507  Sum_probs=55.9

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEE
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~   87 (146)
                      .|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.|.+.|++.||.+++
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~   67 (68)
T 1cpz_A            3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEV   67 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEE
T ss_pred             EEEECCeeCHHHHHHHHHHHHcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCccc
Confidence            5899 99999999999999999999999999999999999853   5788999999999998764

>2kt2_A Mercuric reductase; nmera, MERA, HMA domain, mercuric resist metal-binding, oxidoreductase; NMR {Pseudomonas aeruginosa} PDB: 2kt3_A

Probab=99.30  E-value=1.8e-11  Score=72.37  Aligned_cols=62  Identities=23%  Similarity=0.444  Sum_probs=56.1

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEe
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~   88 (146)
                      .|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|..+  .+.++|.+.|+++||.+.+.
T Consensus         3 ~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~~~~~   67 (69)
T 2kt2_A            3 HLKITGMTCDSCAAHVKEALEKVPGVQSALVSYPKGTAQLAIVPGTSPDALTAAVAGLGYKATLA   67 (69)
T ss_dssp             CEEEESSCSTHHHHHHHHHHHHSTTEEEEEEETTTTEEEEEECTTSCHHHHHHHHHTTTSEEECC
T ss_pred             EEEECCcccHHHHHHHHHHHHcCCCeeEEEEEccCCEEEEEECCCCCHHHHHHHHHHCCCceEeC
Confidence            5889 99999999999999999999999999999999998743  57889999999999987653

>1yg0_A COP associated protein; open-faced beta-sandwich, missing C-terminal beta-sheet, Met transport; NMR {Helicobacter pylori}

Probab=99.29  E-value=1.6e-11  Score=71.70  Aligned_cols=61  Identities=18%  Similarity=0.376  Sum_probs=55.1

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCce
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~   85 (146)
                      +..|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+  .+.+.|.+.|+++||.+
T Consensus         2 ~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~i~~~i~~~G~~~   65 (66)
T 1yg0_A            2 KATFQVPSITCNHCVDKIEKFVGEIEGVSFIDVSVEKKSVVVEFDAPATQDLIKEALLDAGQEV   65 (66)
T ss_dssp             EEEECCTTCSCSHHHHHHHHHHTTSSSEEEEEEETTTTEEEEEECTTCCHHHHHHHHHHHTCCC
T ss_pred             eEEEEECCcccHHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEECCCCCHHHHHHHHHHcCCCc
Confidence            357899 99999999999999999999999999999999999854  47788999999999864

>2kkh_A Putative heavy metal transporter; zinc transport, metal binding, metal selectivity, ferredoxin fold, ATP-binding, hydrolase; NMR {Arabidopsis thaliana}

Probab=99.28  E-value=5e-11  Score=75.48  Aligned_cols=72  Identities=21%  Similarity=0.226  Sum_probs=63.2

Q ss_pred             CCCCceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEecc
Q 032170           19 KRKPMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWPY   90 (146)
Q Consensus        19 ~~~~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~~   90 (146)
                      ....|.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..+++.|..+   ++.+.|.+.|+.+||.+.+...
T Consensus        11 ~~~~~~~~~~~v~gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   86 (95)
T 2kkh_A           11 KVKKLQKSYFDVLGICCTSEVPIIENILKSLDGVKEYSVIVPSRTVIVVHDSLLISPFQIAKALNEARLEANVRVN   86 (95)
T ss_dssp             CSSCSEEEEEEETTCCTTTTHHHHHHHHHHSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCC
T ss_pred             cccceEEEEEEECCcCCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEecC
Confidence            334577889999 99999999999999999999999999999999999854   4788899999999999877654

>1jww_A Potential copper-transporting ATPase; beta-alpha-beta-BETA-alpha-beta, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 2voy_A 1kqk_A

Probab=99.27  E-value=2.6e-11  Score=73.56  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=60.0

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      |.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..+++.|..+   .+.+.|.+.|+++||.+.+..
T Consensus         2 m~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~~   72 (80)
T 1jww_A            2 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG   72 (80)
T ss_dssp             CEEEEEEEESCCCHHHHHHHHHHHHTSTTEEECCCCSSSSEEEEEECTTTCCHHHHHHHHHHHTSEEEECC
T ss_pred             ceEEEEEECCccCHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCeEEecC
Confidence            55678999 99999999999999999999999999999999998743   578889999999999887754

>2ldi_A Zinc-transporting ATPase; metal homeostasis, metallochaperones, hydrolase; NMR {Synechocystis SP}

Probab=99.26  E-value=2.3e-11  Score=71.67  Aligned_cols=64  Identities=22%  Similarity=0.426  Sum_probs=57.1

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceE
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAE   86 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~   86 (146)
                      +.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.+.+.++++||.+.
T Consensus         2 ~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~   69 (71)
T 2ldi_A            2 LKTQQMQVGGMRCAACASSIERALERLKGVAEASVTVATGRLTVTYDPKQVSEITIQERIAALGYTLA   69 (71)
T ss_dssp             CEEEEEEEETCTTSGGGHHHHTGGGGCSSEEEEEEETTTTEEEEEECTTTCCTHHHHHHHHTTTCEEE
T ss_pred             cEEEEEEECCccCHHHHHHHHHHHhcCCCeeEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCcc
Confidence            45678999 99999999999999999999999999999999998743   567889999999999764

>2kyz_A Heavy metal binding protein; structural genomics, PSI-biology, protein structure initiative, joint for structural genomics, JCSG; NMR {Thermotoga maritima}

Probab=99.26  E-value=1.1e-11  Score=73.27  Aligned_cols=60  Identities=25%  Similarity=0.420  Sum_probs=54.5

Q ss_pred             EEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 032170           26 VDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        26 ~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   87 (146)
                      ..|.| ||+|.+|+.+|+++|.++ ||..+.+|+..++++|..+.+ +.|.+.|+++||.+..
T Consensus         3 ~~~~v~gm~C~~C~~~i~~~l~~~-gv~~~~v~~~~~~~~v~~~~~-~~i~~~i~~~Gy~~~~   63 (67)
T 2kyz_A            3 YVLYVPDISCNHCKMRISKALEEL-GVKNYEVSVEEKKVVVETENL-DSVLKKLEEIDYPVES   63 (67)
T ss_dssp             EEEECGGGGSHHHHHHHHHHHHHH-TCSEEEEETTTTEEEEECSCH-HHHHHHHHTTTCCCCB
T ss_pred             EEEEECCcCcHHHHHHHHHHHHHc-CCeEEEEECCCCEEEEEECCH-HHHHHHHHHcCCceee
Confidence            57999 999999999999999999 999999999999999986655 8899999999997653

>1yjr_A Copper-transporting ATPase 1; metallochaperone, protein-protein interaction, copper(I), metal homeostasis, structural proteomics in europe, spine; NMR {Homo sapiens} PDB: 1yjt_A 1yju_A 1yjv_A

Probab=99.25  E-value=3.3e-11  Score=72.13  Aligned_cols=64  Identities=17%  Similarity=0.407  Sum_probs=57.0

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEe
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.|.+.|+++||.+.+.
T Consensus         5 ~~~~~v~gm~C~~c~~~i~~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   72 (75)
T 1yjr_A            5 VLELVVRGMTCASCVHKIESSLTKHRGILYCSVALATNKAHIKYDPEIIGPRDIIHTIESLGFEPSLV   72 (75)
T ss_dssp             CEEEEEETCCTTTHHHHHHHHHTTSTTEEEEEEETTTTEEEEEECTTTTHHHHHHHHHHHHHCEEEES
T ss_pred             EEEEEECCcccHHHHHHHHHHHHcCCCEEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHcCCCceee
Confidence            467999 99999999999999999999999999999999999854   45678999999999987654

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.21  E-value=7.7e-11  Score=79.81  Aligned_cols=64  Identities=17%  Similarity=0.412  Sum_probs=58.7

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEE
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~   87 (146)
                      .++.|.| ||+|.+|+.+|+++|.+++||.++.+|+..++++|..+   ++.++|.+.|+++||.+.+
T Consensus        80 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~  147 (149)
T 2ew9_A           80 GNIELTITGMTCASCVHNIESKLTRTNGITYASVALATSKALVKFDPEIIGPRDIIKIIEEIGFHASL  147 (149)
T ss_dssp             SEEEEEEESCCSHHHHHHHHHHHHHSSSCCEEEEETTTTEEEEECCTTTSCHHHHHHHHHHHTCEEEC
T ss_pred             ceeEEEEEeccCHHHHHHHHHHHhcCCCeEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhCCCceEe
Confidence            5678999 99999999999999999999999999999999999854   5789999999999998765

>1qup_A Superoxide dismutase 1 copper chaperone; two domains, beta-alpha-beta-BETA-alpha-beta and beta barrel; 1.80A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.18  E-value=1.5e-10  Score=84.72  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=63.6

Q ss_pred             eEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEeccCCC
Q 032170           24 QTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPY   93 (146)
Q Consensus        24 ~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~~~   93 (146)
                      .+++|+|.|+|.+|+.+|+++|++++||.++++|+..++++|.+..++++|.++|+++||++.++..+..
T Consensus         6 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aI~~~Gy~a~~~~~~~~   75 (222)
T 1qup_A            6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP   75 (222)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEECCSCT
T ss_pred             eEEEEEEccccHHHHHHHHHHHhcCCCeeEEEEEcCCCEEEEeccCCHHHHHHHHHHcCCccccccCCCc
Confidence            3457888899999999999999999999999999999999999888999999999999999998876543

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=99.18  E-value=1.1e-10  Score=79.44  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=60.9

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      ..++.|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|..+   ++.++|.+.|+++||.+.+..
T Consensus        73 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~  143 (151)
T 1p6t_A           73 TEKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKG  143 (151)
T ss_dssp             CEEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESC
T ss_pred             ccccEEEecCCCCHHHHHHHHHHHhcCCCceEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCCeEEcC
Confidence            35678999 99999999999999999999999999999999999843   688999999999999987765

>2aj0_A Probable cadmium-transporting ATPase; ferrodoxin-like fold, beta-alpha-beta-BETA-alpha-beta, metal binding protein, hydrolase; NMR {Listeria monocytogenes} PDB: 2aj1_A

Probab=99.13  E-value=1.5e-10  Score=69.03  Aligned_cols=60  Identities=27%  Similarity=0.477  Sum_probs=51.8

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEE
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~   87 (146)
                      .+..|.| ||+|.+|+.+|+++|.+++||.++.+++..++++|.++.+    .+.|+++||.+.+
T Consensus         3 ~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~----~~~i~~~Gy~~~~   63 (71)
T 2aj0_A            3 EKTVYRVDGLSCTNCAAKFERNVKEIEGVTEAIVNFGASKITVTGEAS----IQQVEQAGAFEHL   63 (71)
T ss_dssp             CEEEEEEESCCCHHHHHHHHHHHHHSTTEEEEEECCSSEEEEEEESCC----HHHHHHHHTTTTC
T ss_pred             eEEEEEECCcccHHHHHHHHHHHHcCCCeEEEEEECCCCEEEEEecCc----HHHHHHhCCCccc
Confidence            3568999 9999999999999999999999999999999999987654    4567788887544

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=99.11  E-value=5.3e-10  Score=80.04  Aligned_cols=66  Identities=20%  Similarity=0.393  Sum_probs=59.9

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   ++.++|.+.|+++||.+.++.
T Consensus       122 ~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~  191 (202)
T 2rop_A          122 STTLIAIAGMTCASCVHSIEGMISQLEGVQQISVSLAEGTATVLYNPAVISPEELRAAIEDMGFEASVVS  191 (202)
T ss_dssp             EEEEEEESCCCSTHHHHHHHHHGGGSSSEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSCEEEC-
T ss_pred             eEEEEEECCccCHHHHHHHHHHHHcCCCeEEEEEEccCCEEEEEECCCCCCHHHHHHHHHHcCCceEEcC
Confidence            5678999 99999999999999999999999999999999999853   578999999999999988765

>1jk9_B CCS, copper chaperone for superoxide dismutase; protein-protein complex, heterodimer, metallochaperone, amyotrophic lateral sclerosis; 2.90A {Saccharomyces cerevisiae} SCOP: b.1.8.1 d.58.17.1

Probab=99.09  E-value=5.2e-10  Score=83.14  Aligned_cols=70  Identities=17%  Similarity=0.380  Sum_probs=63.3

Q ss_pred             eEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEeccCCC
Q 032170           24 QTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWPYVPY   93 (146)
Q Consensus        24 ~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~~~~~   93 (146)
                      .+++|+|.|+|.+|+.+|+++|++++||.++++|+..++++|.+..++++|.++|+++||.+.+...+..
T Consensus         7 ~~~~l~V~MtC~~Ca~~IekaL~~l~GV~~v~Vnl~~~~v~V~~~~~~~~I~~aIe~~Gy~a~~~~~~~~   76 (249)
T 1jk9_B            7 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRGAGKP   76 (249)
T ss_dssp             EEEEEECCCCSSSHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHTTTCCCEEEEESST
T ss_pred             eeEEEEEeeccHHHHHHHHHHHhccCCeeEEEEEcCCCeEEEecCCCHHHHHHHHHHhCCCcccccCCcc
Confidence            3457888899999999999999999999999999999999999888999999999999999988775543

>2ew9_A Copper-transporting ATPase 2; copper trafficking, ferrodoxin-like fold, structural genomics, structural proteomics in europe, spine, hydrolase; NMR {Homo sapiens}

Probab=99.06  E-value=9.2e-10  Score=74.41  Aligned_cols=66  Identities=17%  Similarity=0.283  Sum_probs=59.7

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~   88 (146)
                      |+++.|.| ||+|.+|+.+|+++|.+++||..+.+++..+++.|..+   .+.+.+.+.|++.||.+.+.
T Consensus         3 ~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~~~~   72 (149)
T 2ew9_A            3 PQKCFLQIKGMTCASCVSNIERNLQKEAGVLSVLVALMAGKAEIKYDPEVIQPLEIAQFIQDLGFEAAVM   72 (149)
T ss_dssp             CEEEEEEEECCCSSSHHHHHHHHHHTTSSCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEEC
T ss_pred             cEEEEEEECCeecHHHHHHHHHHHhcCCCcEEEEEEecCCEEEEEEcCCCCCHHHHHHHHhcCCCceEee
Confidence            67889999 99999999999999999999999999999999998742   57788999999999987754

>1p6t_A Potential copper-transporting ATPase; COPA, P-type ATPase, water-soluble region, beta-alpha-beta- beta-alpha-beta fold; NMR {Bacillus subtilis} SCOP: d.58.17.1 d.58.17.1 PDB: 2rml_A

Probab=98.80  E-value=3.2e-08  Score=66.98  Aligned_cols=64  Identities=17%  Similarity=0.383  Sum_probs=56.2

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCce
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~   85 (146)
                      .+.+..|.| ||+|.+|+.+|+++|.+++||..+.+++..+++.|..+   .+...+.+.+++.||.+
T Consensus         4 ~~~~~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~G~~~   71 (151)
T 1p6t_A            4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (151)
T ss_dssp             CCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             cceEEEEEECCCcCHHHHHHHHHHHhcCCCeeEEEEEccCCEEEEEEcCCcCCHHHHHHHHHHcCCcc
Confidence            345678999 99999999999999999999999999999999988643   57788999999999864

>2rop_A Copper-transporting ATPase 2; wilson protein, mobility, protein-protein interaction, alternative splicing, ATP-binding, copper transport cytoplasm; NMR {Homo sapiens}

Probab=98.78  E-value=1.9e-08  Score=71.84  Aligned_cols=64  Identities=14%  Similarity=0.379  Sum_probs=55.6

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcC---CceE
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTG---KRAE   86 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G---~~~~   86 (146)
                      +.++.|.| ||+|.+|+.+|+++|.+++||..+.+++..++++|..+   .+.+.|.+.|+++|   |.+.
T Consensus        19 ~~~~~l~v~Gm~C~~C~~~ie~~l~~~~GV~~~~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~~~gg~~v~   89 (202)
T 2rop_A           19 VVTLQLRIDGMHCKSCVLNIEENIGQLLGVQSIQVSLENKTAQVKYDPSCTSPVALQRAIEALPPGNFKVS   89 (202)
T ss_dssp             -CEEEEEEESGGGSTHHHHHHHHTTSBTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHTTSSSSCSEEE
T ss_pred             cEEEEEEECCeEcHHHHHHHHHHHhcCCCeEEEEEEecCCEEEEEECCCCCCHHHHHHHHHHhccCCeEEE
Confidence            56778999 99999999999999999999999999999999999743   57788999999883   5553

>3j09_A COPA, copper-exporting P-type ATPase A; copper transporter, adenosine triphosph archaeal proteins, cation transport proteins; 10.00A {Archaeoglobus fulgidus}

Probab=98.71  E-value=4.2e-08  Score=82.60  Aligned_cols=63  Identities=21%  Similarity=0.335  Sum_probs=57.6

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEE
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~   87 (146)
                      +++|+| ||+|.+|+.+|+++|++++||.++++|+.+++++|..+   .+.+++.+.+++.||++..
T Consensus         3 ~~~l~V~GM~Ca~Ca~~Ie~~L~~~~GV~~v~Vnl~~~~~~V~~d~~~~~~~~i~~ai~~~Gy~~~~   69 (723)
T 3j09_A            3 ERTVRVTGMTCAMCVKSIETAVGSLEGVEEVRVNLATETAFIRFDEKRIDFETIKRVIEDLGYGVVD   69 (723)
T ss_dssp             CEEEEEETCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHCCEESS
T ss_pred             eEEEEeCCCCchHHHHHHHHHHhcCCCceEEEEEcCCCEEEEEeCCCcCCHHHHHHHHHhcCCcccc
Confidence            357999 99999999999999999999999999999999999843   6899999999999998753

>1jdq_A TM006 protein, hypothetical protein TM0983; structural genomics; NMR {Thermotoga maritima} SCOP: d.68.3.3

Probab=91.67  E-value=1.4  Score=27.49  Aligned_cols=55  Identities=13%  Similarity=0.121  Sum_probs=42.1

Q ss_pred             EEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           26 VDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        26 ~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .+|.. |+.|+.-.-+++++|.+++.         .+.+.|..+  .....|.+.++..|+......
T Consensus        27 ~~LD~rGl~CP~Pvl~tkkaL~~l~~---------Ge~L~Vl~dd~~a~~dI~~~~~~~G~~v~~~e   84 (98)
T 1jdq_A           27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVLEIE   84 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEEEEE
T ss_pred             EEEeCCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            57899 99999999999999998742         234555433  446889999999999876543

>3bpd_A Uncharacterized protein; heptamer, Mg+2 ION, PSI-2, NYSGXRC, structural genom protein structure initiative; 2.80A {Archaeoglobus fulgidus dsm 4304} SCOP: d.58.61.1

Probab=90.46  E-value=0.65  Score=29.07  Aligned_cols=66  Identities=12%  Similarity=0.171  Sum_probs=47.1

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEe-----cCCCE--EEEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVN-----RKQSR--VTVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd-----~~~~~--v~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+++.|.| .-+-++- -.+-+.|.+++||..|++.     ..+..  ++|+|. ++.++|.++|++.|.-..-.
T Consensus         5 ~iRRlVLDVlKPh~P~i-vdlA~~l~~~~gV~gVnItV~EvD~eTe~lkItIEG~dIdfd~I~~~IE~~GgvIHSI   79 (100)
T 3bpd_A            5 GLRRLVLDVLKPHEPKT-IVFALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSV   79 (100)
T ss_dssp             SEEEEEEEEEEESCSCH-HHHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEE
T ss_pred             cceEEEEEecCCCCCCH-HHHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence            367778887 4455544 3566779999999988764     33333  345576 99999999999999765544

>2x3d_A SSO6206; unknown function; 2.70A {Sulfolobus solfataricus}

Probab=89.29  E-value=1.9  Score=26.84  Aligned_cols=66  Identities=11%  Similarity=0.240  Sum_probs=46.8

Q ss_pred             CceEEEEEE--cCcCHhHHHHHHHHHhCCCCceEEEEe-----cCCCE--EEEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           22 PMQTVDIKV--KMDCDGCERKVRNAVSSIRGAKSVEVN-----RKQSR--VTVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        22 ~~~~~~l~V--~m~C~~C~~~i~~~L~~~~GV~~v~vd-----~~~~~--v~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+++.|.|  .++-++-. .+-+.|.+++||..+++.     ..+..  ++|+|. ++.++|.++|++.|.-..-.
T Consensus         3 ~irRlVLDVlKP~h~P~iv-d~A~~l~~~~gV~gVnItv~EvD~eTe~lkItIEG~~idfd~I~~~IE~~Gg~IHSI   78 (96)
T 2x3d_A            3 AIRRLVLDVLKPIRGTSIV-DLAERISKLDGVEGVNISVTDMDVETMGLMIIIEGTSLNFDDIRKMLEEEGCAIHSI   78 (96)
T ss_dssp             CEEEEEEEEEEESSSSCHH-HHHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEESSCCHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEEEcccCCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence            356677777  33655554 566779999999988764     33333  345576 89999999999999765543

>2raq_A Conserved protein MTH889; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 3.11A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: d.58.61.1

Probab=88.95  E-value=1.8  Score=26.95  Aligned_cols=65  Identities=15%  Similarity=0.295  Sum_probs=46.7

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEe-----cCCCEE--EEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVN-----RKQSRV--TVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd-----~~~~~v--~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      .+++.|.| .-+-++-. .+-+.|.+++||..+++.     ..+..+  +|+|. ++.++|.++|++.|.-..-.
T Consensus         6 irRlVLDVlKPh~p~i~-d~A~~l~~~~gV~gVnItv~EvD~eTe~lkitiEG~~id~d~I~~~IE~~Gg~IHSI   79 (97)
T 2raq_A            6 LIRIVLDILKPHEPIIP-EYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSV   79 (97)
T ss_dssp             EEEEEEEEECCSCSCHH-HHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEE
T ss_pred             ceEEEEEecCCCCCCHH-HHHHHHHhCCCcceEEEEEEEeeccccEEEEEEEecCCCHHHHHHHHHHcCCeEEee
Confidence            57778888 55555543 566778899999887754     444444  45576 99999999999999765543

>3lvj_C Sulfurtransferase TUSA; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 2.44A {Escherichia coli} SCOP: d.68.3.3 PDB: 3lvk_B* 1dcj_A

Probab=87.26  E-value=3.2  Score=24.71  Aligned_cols=55  Identities=7%  Similarity=0.035  Sum_probs=41.1

Q ss_pred             EEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           26 VDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        26 ~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .++.. |+.|+.-.-+++++|.+++.         .+.+.|..+  .....|...+++.|+......
T Consensus        11 ~~lD~rGl~CP~Pvl~~kkal~~l~~---------G~~l~V~~dd~~a~~di~~~~~~~G~~~~~~~   68 (82)
T 3lvj_C           11 HTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAKE   68 (82)
T ss_dssp             EEEECTTCCTTHHHHHHHHHHHTSCT---------TCEEEEEECCTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             EEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            57888 99999999999999998742         233444432  455788889999999876543

>3cq1_A Putative uncharacterized protein TTHB138; DTDP-4-keto-L-rhamnose reductase, plasmid, oxidoreductase, structural genomics, NPPSFA; 1.90A {Thermus thermophilus} PDB: 2cu6_A 3cq2_A 3cq3_A*

Probab=85.83  E-value=1.3  Score=27.59  Aligned_cols=35  Identities=29%  Similarity=0.552  Sum_probs=26.4

Q ss_pred             EEEEEEcCcCHhH------HHHHHHHHhCCCCceEEEEecC
Q 032170           25 TVDIKVKMDCDGC------ERKVRNAVSSIRGAKSVEVNRK   59 (146)
Q Consensus        25 ~~~l~V~m~C~~C------~~~i~~~L~~~~GV~~v~vd~~   59 (146)
                      ++.+.+.+++++|      ...|+.+|.+++||.++++++.
T Consensus        42 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~V~V~l~   82 (103)
T 3cq1_A           42 RAYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT   82 (103)
T ss_dssp             EEEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred             EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCceeEEEEEe
Confidence            4456666677777      5678999999999998887743

>1je3_A EC005, hypothetical 8.6 kDa protein in AMYA-FLIE intergenic region; mixed alpha-beta structure, structural genomics; NMR {Escherichia coli} SCOP: d.68.3.3

Probab=85.09  E-value=1.7  Score=27.04  Aligned_cols=55  Identities=9%  Similarity=0.045  Sum_probs=40.5

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEe
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..++.+ |+.|+.-.-+++++|.+++.         .+.+.|..+  ...+.|...++..|+.....
T Consensus        27 ~~~LD~rGl~CP~PvlktkkaL~~l~~---------Ge~L~Vl~dd~~a~~dIp~~~~~~G~~v~~~   84 (97)
T 1je3_A           27 DYRLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI   84 (97)
T ss_dssp             EEEECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred             CeEEeCCCCCCCHHHHHHHHHHHcCCC---------CCEEEEEECCcchHHHHHHHHHHCCCEEEEE
Confidence            457888 99999999999999998742         223444432  34567888899999987654

>3hz7_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Desulfitobacterium hafniense}

Probab=83.72  E-value=4  Score=24.71  Aligned_cols=54  Identities=17%  Similarity=0.210  Sum_probs=40.4

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCC-CceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIR-GAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~-GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      ++.. |+.|+.-.-+++++|.+++ .         .+.+.|..+  ...+.|...++..|+......
T Consensus         3 ~lD~rGl~CP~Pvl~~kkal~~l~~~---------G~~L~V~~dd~~a~~dI~~~~~~~G~~v~~~~   60 (87)
T 3hz7_A            3 TIDALGQVCPIPVIRAKKALAELGEA---------GGVVTVLVDNDISRQNLQKMAEGMGYQSEYLE   60 (87)
T ss_dssp             EEECTTCCTTHHHHHHHHHHHTTGGG---------CCEEEEEESSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred             EEEcCCCCCCHHHHHHHHHHHhccCC---------CCEEEEEECCccHHHHHHHHHHHCCCEEEEEE
Confidence            4788 9999999999999999883 1         234444433  456788889999999876543

>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A

Probab=83.58  E-value=5.8  Score=24.50  Aligned_cols=47  Identities=9%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             HhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec-CCHHHHHHHHHhc
Q 032170           35 DGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY-VDPNKVLKKVKST   81 (146)
Q Consensus        35 ~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~~~   81 (146)
                      ++=...|.++|.+++|++-..++...+++.|+-+ .+.+++.+.|.+.
T Consensus        16 p~~~~~V~~~L~~ipgvEi~~~~~~~GkiVV~iEa~~~~~l~~~i~~I   63 (95)
T 2jsx_A           16 SERISDISTQLNAFPGCEVAVSDAPSGQLIVVVEAEDSETLIQTIESV   63 (95)
T ss_dssp             TTSHHHHHHHHTTSTTEEEEEEETTTTEEEEEEEESSHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHCCCCeEEEEecCCCCCEEEEEEeCCHHHHHHHHHHH
Confidence            3446789999999999954455666778776632 4566666665443

>1uwd_A Hypothetical protein TM0487; similar to PAAD protein, alpha/beta fold,structural genomics joint center for structural genomics, JCSG; NMR {Thermotoga maritima} SCOP: d.52.8.2 PDB: 1wcj_A

Probab=82.89  E-value=2.1  Score=26.66  Aligned_cols=35  Identities=26%  Similarity=0.428  Sum_probs=25.1

Q ss_pred             EEEEEEcCcCHhH------HHHHHHHHhCCCCceEEEEecC
Q 032170           25 TVDIKVKMDCDGC------ERKVRNAVSSIRGAKSVEVNRK   59 (146)
Q Consensus        25 ~~~l~V~m~C~~C------~~~i~~~L~~~~GV~~v~vd~~   59 (146)
                      ++.+.+.++.++|      ...|+.+|.+++||.++++++.
T Consensus        43 ~V~v~l~lt~~~cp~~~~l~~~i~~al~~l~gv~~v~V~l~   83 (103)
T 1uwd_A           43 NVKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT   83 (103)
T ss_dssp             EEEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             EEEEEEEECCCCCcHHHHHHHHHHHHHHhCCCcceEEEEEe
Confidence            4555555566555      4568899999999998887743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	146
d1cc8a_	72	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	7e-16
d1qupa2	72	d.58.17.1 (A:2-73) Copper chaperone for superoxide	6e-15
d1fe0a_	66	d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX	1e-14
d1osda_	72	d.58.17.1 (A:) Mercuric ion binding protein MerP {	3e-12
d1sb6a_	64	d.58.17.1 (A:) Copper chaperone {Synechocystis sp.	4e-12
d1kvja_	79	d.58.17.1 (A:) Menkes copper-transporting ATPase {	4e-11
d2ggpb1	72	d.58.17.1 (B:1-72) Copper transporter domain ccc2a	5e-11
d2qifa1	69	d.58.17.1 (A:1-69) Copper chaperone {Bacillus subt	5e-10
d1p6ta2	79	d.58.17.1 (A:73-151) Potential copper-translocatin	6e-10
d2aw0a_	72	d.58.17.1 (A:) Menkes copper-transporting ATPase {	8e-10
d1cpza_	68	d.58.17.1 (A:) Copper chaperone {Enterococcus hira	1e-09
d1p6ta1	72	d.58.17.1 (A:1-72) Potential copper-translocating	2e-09
d1mwza_	73	d.58.17.1 (A:) Metal ion-transporting ATPase ZntA,	2e-09
d1q8la_	84	d.58.17.1 (A:) Menkes copper-transporting ATPase {	6e-07

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.6 bits (160), Expect = 7e-16
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 1/64 (1%)

Query: 23 MQTVDIKVKMDCDGCERKVRNAVSSI-RGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKST 81
          ++     V M C GC   V   ++ +      ++++ ++  V V   +  + +L+K+K T
Sbjct: 3  IKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKT 62

Query: 82 GKRA 85
          GK  
Sbjct: 63 GKEV 66

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 63.3 bits (154), Expect = 6e-15
 Identities = 12/70 (17%), Positives = 31/70 (44%), Gaps = 1/70 (1%)

Query: 19 KRKPMQTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKV 78
               +     + M C+ C   ++  + ++ G  S+  + +Q  ++V   V P+ ++  +
Sbjct: 2  TNDTYEAT-YAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTL 60

Query: 79 KSTGKRAEFW 88
          ++ GK A   
Sbjct: 61 RNCGKDAIIR 70

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]} Length = 66

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

 Score = 62.5 bits (152), Expect = 1e-14
 Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 1/60 (1%)

Query: 29 KVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFW 88
           V M C GC   V   ++ + G    +++    +V +      + +L  +K TGK   + 
Sbjct: 6  SVDMTCGGCAEAVSRVLNKLGG-VKYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYL 64

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

 Score = 56.3 bits (136), Expect = 3e-12
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVK 79
          QTV + V  M C  C   V+ A+S + G   V+V  +  +  VT         K+ K   
Sbjct: 3  QTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATA 62

Query: 80 STGKRAE 86
            G  + 
Sbjct: 63 DAGYPSS 69

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]} Length = 64

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

 Score = 55.7 bits (134), Expect = 4e-12
 Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)

Query: 25 TVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGK 83
          T+ + V  + C+ C   V  AV +     +V+V+    +VT+T  +   ++   + S G 
Sbjct: 2  TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGH 61

Query: 84 RAE 86
            E
Sbjct: 62 EVE 64

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.7 bits (129), Expect = 4e-11
 Identities = 12/68 (17%), Positives = 28/68 (41%), Gaps = 4/68 (5%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          + +V I V+ M C+ C   +   +  + G   ++V+ ++   T+        P  + + +
Sbjct: 7  VNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAI 66

Query: 79 KSTGKRAE 86
             G  A 
Sbjct: 67 DDMGFDAV 74

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.2 bits (128), Expect = 5e-11
 Identities = 11/66 (16%), Positives = 27/66 (40%), Gaps = 3/66 (4%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT--GYVDPNKVLKKVKS 80
          + V + V  M C  C   +   + +++G    +++   +   VT    V  + + + ++ 
Sbjct: 2  REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIED 61

Query: 81 TGKRAE 86
           G   E
Sbjct: 62 CGFDCE 67

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]} Length = 69

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

 Score = 50.6 bits (121), Expect = 5e-10
 Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKV 78
          M+   ++V+ M C  C + V  +V  + G  +V VN +  +V V+     V    +   +
Sbjct: 1  MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAI 60

Query: 79 KSTG 82
          +  G
Sbjct: 61 EDQG 64

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 79

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 50.7 bits (121), Expect = 6e-10
 Identities = 12/67 (17%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVK 79
          +  +  ++ M C  C  ++   ++ I G  +  VN     VTV         + + + V 
Sbjct: 2  EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVD 61

Query: 80 STGKRAE 86
            G + +
Sbjct: 62 KLGYKLK 68

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (119), Expect = 8e-10
 Identities = 16/67 (23%), Positives = 26/67 (38%), Gaps = 4/67 (5%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVK 79
          Q   I +  M C+ C + +   +S   G KS+ V+   S  TV        P  +   ++
Sbjct: 3  QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIE 62

Query: 80 STGKRAE 86
            G  A 
Sbjct: 63 DMGFDAT 69

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]} Length = 68

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

 Score = 49.4 bits (118), Expect = 1e-09
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 3/58 (5%)

Query: 32 MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVKSTGKRAE 86
          M C+ C  ++  AV  I G K V+V  K+ +  V      V   ++ + +   G +AE
Sbjct: 9  MSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAE 66

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]} Length = 72

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

 Score = 49.0 bits (117), Expect = 2e-09
 Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 4/63 (6%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVT---GYVDPNKVLKKVK 79
          + + ++V  M C  C  ++   +  + G     VN     V V           + +K++
Sbjct: 6  KEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIE 65

Query: 80 STG 82
            G
Sbjct: 66 KLG 68

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 73

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 48.6 bits (116), Expect = 2e-09
 Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 23 MQTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVD-PNKVLKKVKS 80
                KV  MDC  C RKV NAV  + G   V+V     ++ V    D   +V   ++ 
Sbjct: 2  GTRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQK 61

Query: 81 TGKRAE 86
           G    
Sbjct: 62 AGYSLR 67

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (100), Expect = 6e-07
 Identities = 11/67 (16%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 24 QTVDIKVK-MDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVK 79
            + +KV+ M C  C   +   +  ++G + ++V+      T+      +   ++ K+++
Sbjct: 9  VVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIE 68

Query: 80 STGKRAE 86
          + G  A 
Sbjct: 69 AMGFPAF 75

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	146
d1fe0a_	66	ATX1 metallochaperone protein (ATOX1) {Human (Homo	99.75
d1qupa2	72	Copper chaperone for superoxide dismutase, N-termi	99.74
d1cc8a_	72	ATX1 metallochaperone protein (ATOX1) {Baker's yea	99.72
d2ggpb1	72	Copper transporter domain ccc2a {Baker's yeast (Sa	99.67
d2qifa1	69	Copper chaperone {Bacillus subtilis, CopZ [TaxId:	99.67
d1sb6a_	64	Copper chaperone {Synechocystis sp. pcc 6803, Scat	99.67
d1cpza_	68	Copper chaperone {Enterococcus hirae [TaxId: 1354]	99.66
d1osda_	72	Mercuric ion binding protein MerP {Ralstonia metal	99.66
d1kvja_	79	Menkes copper-transporting ATPase {Human (Homo sap	99.65
d2aw0a_	72	Menkes copper-transporting ATPase {Human (Homo sap	99.65
d1p6ta1	72	Potential copper-translocating P-type ATPase CopA	99.61
d1q8la_	84	Menkes copper-transporting ATPase {Human (Homo sap	99.6
d1p6ta2	79	Potential copper-translocating P-type ATPase CopA	99.59
d1mwza_	73	Metal ion-transporting ATPase ZntA, N-terminal dom	99.58
d3bpda1	91	Uncharacterized protein AF1549 {Archaeoglobus fulg	92.53
d2raqa1	93	Uncharacterized protein MTH889 {Methanobacterium t	89.95
d1jdqa_	98	Hypothetical protein TM0983 {Thermotoga maritima [	89.54
d1dcja_	81	SirA {Escherichia coli [TaxId: 562]}	87.59
d1je3a_	97	hypothetical protein YedF (EC005) {Escherichia col	86.97
d2cu6a1	91	Hypothetical protein TTHB138 {Thermus thermophilus	85.71
d1uwda_	102	Hypothetical protein TM0487 {Thermotoga maritima [	84.65

>d1fe0a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Human (Homo sapiens), HAH1 [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Human (Homo sapiens), HAH1 [TaxId: 9606]

Probab=99.75  E-value=3.7e-18  Score=101.24  Aligned_cols=64  Identities=20%  Similarity=0.471  Sum_probs=61.2

Q ss_pred             EEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 032170           25 TVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        25 ~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      +.+|+|+|+|.+|+.+|+++|++++|+ ++++|+.+++++|.++++++.|+++|+++||++++++
T Consensus         2 k~ef~V~M~C~~C~~~I~~aL~~~~gv-~v~v~~~~~~v~V~~~~~~~~i~~~I~~~Gy~a~lig   65 (66)
T d1fe0a_           2 KHEFSVDMTCGGCAEAVSRVLNKLGGV-KYDIDLPNKKVCIESEHSMDTLLATLKKTGKTVSYLG   65 (66)
T ss_dssp             EEEEEECCCSHHHHHHHHHHHHHHCSE-EEEEETTTTEEEEEESSCHHHHHHHHHTTTSCEEEEE
T ss_pred             CEEEEEccCchHHHHHHHHHHhcCCCc-EEEEEcCCCEEEEEeeCCHHHHHHHHHHhCCeEEEee
Confidence            568999999999999999999999998 6999999999999999999999999999999999886

>d1qupa2 d.58.17.1 (A:2-73) Copper chaperone for superoxide dismutase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone for superoxide dismutase, N-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.74  E-value=8.3e-18  Score=101.35  Aligned_cols=66  Identities=18%  Similarity=0.450  Sum_probs=62.9

Q ss_pred             eEEEEEEcCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceEEec
Q 032170           24 QTVDIKVKMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        24 ~~~~l~V~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      .+.+|.|+|+|++|+.+|+++|++++||.++.+|+..++++|.+.+++++|+++|+++||++.+++
T Consensus         6 ~~~~f~V~M~C~~C~~~Iek~l~~~~gV~~v~vdl~~~~v~V~~~~~~~~i~~~I~~~G~~A~l~g   71 (72)
T d1qupa2           6 YEATYAIPMHCENCVNDIKACLKNVPGINSLNFDIEQQIMSVESSVAPSTIINTLRNCGKDAIIRG   71 (72)
T ss_dssp             EEEEEECCCCSTTHHHHHHHHHTTCTTEEEEEEETTTTEEEEEESSCHHHHHHHHHHTTCCCEEEC
T ss_pred             EEEEEEEccCCHHHHHHHHHHHhcCCCeeEEEEECCCCEEEEEeeCCHHHHHHHHHHhCCCEEEec
Confidence            456899999999999999999999999999999999999999999999999999999999999875

>d1cc8a_ d.58.17.1 (A:) ATX1 metallochaperone protein (ATOX1) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: ATX1 metallochaperone protein (ATOX1)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.72  E-value=3.1e-17  Score=98.75  Aligned_cols=65  Identities=22%  Similarity=0.453  Sum_probs=62.0

Q ss_pred             CceEEEEEEcCcCHhHHHHHHHHHhCC-CCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceE
Q 032170           22 PMQTVDIKVKMDCDGCERKVRNAVSSI-RGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE   86 (146)
Q Consensus        22 ~~~~~~l~V~m~C~~C~~~i~~~L~~~-~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   86 (146)
                      ++++++|+|+|+|.+|+++|+++|.++ +||.++++|+.+++++|.+++++++|+++|+++||++.
T Consensus         2 ~~kt~~f~V~MtC~~C~~~Ie~~L~~l~~gV~~v~v~~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   67 (72)
T d1cc8a_           2 EIKHYQFNVVMTCSGCSGAVNKVLTKLEPDVSKIDISLEKQLVDVYTTLPYDFILEKIKKTGKEVR   67 (72)
T ss_dssp             CCEEEEEEECCCSHHHHHHHHHHHHTTTTSEEEEEEETTTTEEEEEESSCHHHHHHHHHTTSSCEE
T ss_pred             CcEEEEEEECcCcHHHHHHHHHHHHcCcCceEEEEEECCCCEEEEeecCCHHHHHHHHHHHCCccC
Confidence            578899999999999999999999999 59999999999999999999999999999999999886

>d2ggpb1 d.58.17.1 (B:1-72) Copper transporter domain ccc2a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper transporter domain ccc2a
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.67  E-value=1e-16  Score=96.45  Aligned_cols=66  Identities=17%  Similarity=0.372  Sum_probs=61.5

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe--cCCHHHHHHHHHhcCCceEEec
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG--YVDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~--~~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      +++.|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|..  .++.++|.++|+++||+++++.
T Consensus         2 k~v~l~V~GM~C~~C~~~Ie~~l~~~~gV~~v~V~~~~~~~~v~~~~~~~~~~i~~~i~~~Gy~a~~~~   70 (72)
T d2ggpb1           2 REVILAVHGMTCSACTNTINTQLRALKGVTKCDISLVTNECQVTYDNEVTADSIKEIIEDCGFDCEILR   70 (72)
T ss_dssp             EEEEEECTTCCSSTTTHHHHHHHTTSTTEEEEEECTTTCEEEEEECSSCCHHHHHHHHHHTTCCCEEEE
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCHHHHHHHHHHhCCCeEEcc
Confidence            5789999 9999999999999999999999999999999999984  4889999999999999998864

>d2qifa1 d.58.17.1 (A:1-69) Copper chaperone {Bacillus subtilis, CopZ [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Bacillus subtilis, CopZ [TaxId: 1423]

Probab=99.67  E-value=3.5e-16  Score=93.32  Aligned_cols=63  Identities=24%  Similarity=0.457  Sum_probs=59.2

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCce
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~   85 (146)
                      |++.+|+| ||+|.+|+.+|+++|++++||.++++|+..++++|..+   ++.++|.+.|+++||++
T Consensus         1 M~~~tl~V~Gm~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~~   67 (69)
T d2qifa1           1 MEQKTLQVEGMSCQHCVKAVETSVGELDGVSAVHVNLEAGKVDVSFDADKVSVKDIADAIEDQGYDV   67 (69)
T ss_dssp             CEEEEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHHTTCEE
T ss_pred             CcEEEEEECCccCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            57889999 99999999999999999999999999999999999943   78999999999999986

>d1sb6a_ d.58.17.1 (A:) Copper chaperone {Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Synechocystis sp. pcc 6803, Scatx1 [TaxId: 1148]

Probab=99.67  E-value=4.2e-17  Score=96.04  Aligned_cols=62  Identities=24%  Similarity=0.494  Sum_probs=59.1

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEecCCHHHHHHHHHhcCCceE
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGYVDPNKVLKKVKSTGKRAE   86 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~~~~~~i~~~i~~~G~~~~   86 (146)
                      +++|.| ||+|.+|+.+|+++|++++||.++.+|+.+++++|.+++++++|.++|+++||+++
T Consensus         2 t~~l~V~gM~C~~C~~~Ie~~l~~~~gv~~v~v~~~~~~v~v~~~~~~~~i~~~i~~~GY~ve   64 (64)
T d1sb6a_           2 TIQLTVPTIACEACAEAVTKAVQNEDAQATVQVDLTSKKVTITSALGEEQLRTAIASAGHEVE   64 (64)
T ss_dssp             EEEEECTTTTSSSCTHHHHHHHHHHCTTCEEEEETTTTEEEEESSSCHHHHHHHHHHHCCCCC
T ss_pred             eEEEEECCccchhHHHHHHHHHhcCCCeeEEEccCCCCEEEEccCCCHHHHHHHHHHcCCCCC
Confidence            468999 99999999999999999999999999999999999999999999999999999864

>d1cpza_ d.58.17.1 (A:) Copper chaperone {Enterococcus hirae [TaxId: 1354]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Copper chaperone
species: Enterococcus hirae [TaxId: 1354]

Probab=99.66  E-value=3.3e-16  Score=93.20  Aligned_cols=62  Identities=27%  Similarity=0.497  Sum_probs=58.0

Q ss_pred             EEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhcCCceEEe
Q 032170           27 DIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG---YVDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        27 ~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   88 (146)
                      +|+| ||+|.+|+.+|+++|++++||.++++|+..++++|..   .++.++|.++|+++||+++++
T Consensus         3 el~V~GM~C~~C~~~Ie~~l~~~~GV~~v~V~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~vi   68 (68)
T d1cpza_           3 EFSVKGMSCNHCVARIEEAVGRISGVKKVKVQLKKEKAVVKFDEANVQATEICQAINELGYQAEVI   68 (68)
T ss_dssp             EEEESCCCSSSHHHHHHHHHHTSTTEEEEEEETTTTEEEEEECTTTCCHHHHHHHHHTTSSCEEEC
T ss_pred             EEEECCeEcHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEEC
Confidence            6899 9999999999999999999999999999999999984   378999999999999998863

>d1osda_ d.58.17.1 (A:) Mercuric ion binding protein MerP {Ralstonia metallidurans CH34 [TaxId: 266264]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Mercuric ion binding protein MerP
species: Ralstonia metallidurans CH34 [TaxId: 266264]

Probab=99.66  E-value=4e-16  Score=93.83  Aligned_cols=66  Identities=27%  Similarity=0.405  Sum_probs=61.2

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG---YVDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   88 (146)
                      .+++.|+| ||+|.+|+.+|+++|++++||.++++|+..+++.|..   .++.++|.+.|+++||+++++
T Consensus         2 tqt~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~a~v~   71 (72)
T d1osda_           2 TQTVTLSVPGMTCSACPITVKKAISKVEGVSKVDVTFETRQAVVTFDDAKTSVQKLTKATADAGYPSSVK   71 (72)
T ss_dssp             EEEEEEECTTCCSTTHHHHHHHHHHTSTTEEEEEEETTTTEEEEEEETTTCCHHHHHHHHHHTTCCCEEC
T ss_pred             CeEEEEEECCcccHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHhcCCCeEeC
Confidence            36789999 9999999999999999999999999999999999984   378999999999999999875

>d1kvja_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=8.5e-16  Score=93.97  Aligned_cols=70  Identities=17%  Similarity=0.369  Sum_probs=64.7

Q ss_pred             CCCceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           20 RKPMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        20 ~~~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      ...++++.|.| ||+|.+|+.+|+++|++++||.++++|+..++++|..+   ++.++|.++|+++||++.+..
T Consensus         4 ~~~~~~~~l~V~gm~C~~C~~~ie~~l~~~~gv~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~GY~~~~~~   77 (79)
T d1kvja_           4 SMGVNSVTISVEGMTCNSCVWTIEQQIGKVNGVHHIKVSLEEKNATIIYDPKLQTPKTLQEAIDDMGFDAVIHN   77 (79)
T ss_dssp             STTCEEEEEEEESCCSTHHHHHHHHHHHTTTTCSEEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTCEEEECS
T ss_pred             CCCceEEEEEECCeecHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCCCHHHHHHHHHhcCCCcEeCC
Confidence            34588999999 99999999999999999999999999999999999843   799999999999999998765

>d2aw0a_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=5.8e-16  Score=93.10  Aligned_cols=65  Identities=25%  Similarity=0.396  Sum_probs=60.2

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhcCCceEEe
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG---YVDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ++..|+| ||+|.+|+.+|+++|.+++||.++++|+..++++|..   .++.++|.++|+++||++.+.
T Consensus         3 ~~~~l~V~GM~C~~C~~~Ie~~l~~~~GV~~v~v~~~~~~v~v~~d~~~~~~~~i~~~i~~~Gy~a~l~   71 (72)
T d2aw0a_           3 QETVINIDGMTCNSCVQSIEGVISKKPGVKSIRVSLANSNGTVEYDPLLTSPETLRGAIEDMGFDATLS   71 (72)
T ss_dssp             EEEEEEEECCCSHHHHHHHHHHHHTSTTCCCEEEETTTTEEEEEECTTTCCHHHHHHHHHHHTSEEEEC
T ss_pred             EEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEECCCCEEEEEECCCCCCHHHHHHHHHhhCCCcEeC
Confidence            5678999 9999999999999999999999999999999999984   378999999999999998764

>d1p6ta1 d.58.17.1 (A:1-72) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.61  E-value=2.3e-15  Score=90.42  Aligned_cols=64  Identities=17%  Similarity=0.383  Sum_probs=59.3

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhcCCce
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG---YVDPNKVLKKVKSTGKRA   85 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~   85 (146)
                      ..++++|+| ||+|.+|+.+|+++|.+++||.++.+|+..++++|..   ..+.++|.++|+++||++
T Consensus         4 ~~~~~~l~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~d~~~~~~~~i~~~i~~~Gy~v   71 (72)
T d1p6ta1           4 EQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLATETVNVIYDPAETGTAAIQEKIEKLGYHV   71 (72)
T ss_dssp             CCEEEEEEEESCCSSHHHHHHHHHHTTSSSEEEEEEEGGGTEEEEEECTTTSCHHHHHHHHHHHTCEE
T ss_pred             CceEEEEEECCeecHHHHHHHHHHHHcCCCcEEEEEEcCCCEEEEEECCCCCCHHHHHHHHHHhCCcc
Confidence            456889999 9999999999999999999999999999999999984   378999999999999975

>d1q8la_ d.58.17.1 (A:) Menkes copper-transporting ATPase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Menkes copper-transporting ATPase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=2.5e-15  Score=92.88  Aligned_cols=69  Identities=16%  Similarity=0.340  Sum_probs=63.1

Q ss_pred             CCceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec---CCHHHHHHHHHhcCCceEEec
Q 032170           21 KPMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY---VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        21 ~~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~---~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      ....++.|+| ||+|.+|+.+|+++|.+++||.++++|+.+++++|..+   ++.+.|.+.|+++||++.+..
T Consensus         6 ~~~~~v~l~V~GMtC~~C~~~Ie~~l~~~~GV~~v~vn~~~~~v~v~~~~~~~~~~~i~~~I~~~Gy~a~~~~   78 (84)
T d1q8la_           6 AGEVVLKMKVEGMTCHSCTSTIEGKIGKLQGVQRIKVSLDNQEATIVYQPHLISVEEMKKQIEAMGFPAFVKK   78 (84)
T ss_dssp             SSCEEEEEEECCTTTCSSCHHHHHHHHTCTTEEEEEECSTTTEEEEEECTTTCCHHHHHHHHHHTTCCEECSC
T ss_pred             CCCEEEEEEECCeEcHHHHHHHHHHHhcCCCceEEEEECCCCEEceeecccccCHHHHHHHHHHhCCccEEcC
Confidence            3456789999 99999999999999999999999999999999999843   789999999999999998775

>d1p6ta2 d.58.17.1 (A:73-151) Potential copper-translocating P-type ATPase CopA (YvgX) {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Potential copper-translocating P-type ATPase CopA (YvgX)
species: Bacillus subtilis [TaxId: 1423]

Probab=99.59  E-value=2.9e-15  Score=91.54  Aligned_cols=67  Identities=18%  Similarity=0.328  Sum_probs=61.8

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEe---cCCHHHHHHHHHhcCCceEEecc
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTG---YVDPNKVLKKVKSTGKRAEFWPY   90 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~---~~~~~~i~~~i~~~G~~~~~~~~   90 (146)
                      .+++|.| ||+|.+|+.+|+++|.+++||.++++|+..++++|..   .++.++|.++|+++||++.+.+.
T Consensus         2 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~~~i~~~i~~~Gy~~~~~~~   72 (79)
T d1p6ta2           2 EKAEFDIEGMTCAACANRIEKRLNKIEGVANAPVNFALETVTVEYNPKEASVSDLKEAVDKLGYKLKLKGE   72 (79)
T ss_dssp             EEEEEEESSCCSSSHHHHHHHHHTTSSSEEECCEETTTTEEEEEECTTTCCHHHHHHHHHHHTCCEEESCS
T ss_pred             eEEEEEECCcccHHHHHHHHHHHhcCCCcEEEEEEeCCCEEEEEECCCCCCHHHHHHHHHHHCCceEECCc
Confidence            4688999 9999999999999999999999999999999999984   37899999999999999988653

>d1mwza_ d.58.17.1 (A:) Metal ion-transporting ATPase ZntA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: HMA, heavy metal-associated domain
family: HMA, heavy metal-associated domain
domain: Metal ion-transporting ATPase ZntA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.3e-15  Score=89.94  Aligned_cols=64  Identities=28%  Similarity=0.371  Sum_probs=58.5

Q ss_pred             eEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec-CCHHHHHHHHHhcCCceEE
Q 032170           24 QTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY-VDPNKVLKKVKSTGKRAEF   87 (146)
Q Consensus        24 ~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~-~~~~~i~~~i~~~G~~~~~   87 (146)
                      ++++|.| ||+|++|+.+|+++|.+++||.++++|+..++++|..+ ...++|.+.|+++||.+..
T Consensus         3 ~k~~~~V~Gm~C~~C~~~Ie~~l~~~~gV~~v~v~~~~~~~~v~~~~~~~~~i~~~i~~~GY~v~~   68 (73)
T d1mwza_           3 TRYSWKVSGMDCAACARKVENAVRQLAGVNQVQVLFATEKLVVDADNDIRAQVESALQKAGYSLRD   68 (73)
T ss_dssp             CCEEEECTTCCSHHHHHHHHHHHHTSSSEEEEEEETTTTEEEEEESSCCHHHHHHHHHHHTCCCCB
T ss_pred             CEEEEEECCcCCHHHHHHHHHHHhcCCCceEEEEECCCCEEEEEECCCCHHHHHHHHHHcCCcccC
Confidence            4678999 99999999999999999999999999999999999865 4578999999999998764

>d3bpda1 d.58.61.1 (A:1-91) Uncharacterized protein AF1549 {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein AF1549
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=92.53  E-value=0.5  Score=27.66  Aligned_cols=66  Identities=12%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             CceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEe-----cCCCE--EEEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           22 PMQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVN-----RKQSR--VTVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        22 ~~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd-----~~~~~--v~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+++.|.| --+-+.-.. +-+.|.+++||..+++.     ..+..  ++|.|. ++-++|.+.|++.|.-..-.
T Consensus         3 ~irRlVLDVlKPh~p~~~~-~A~~l~~~~gV~~VnitV~EiD~~t~~i~ItiEG~~idyd~i~~~IE~~Gg~IHSI   77 (91)
T d3bpda1           3 GLRRLVLDVLKPHEPKTIV-FALKLSELENVDGVNIHLSEIDQATENIKITILGNNLDYEQIKGVIEDMGGVIHSV   77 (91)
T ss_dssp             SEEEEEEEEEEESCSCHHH-HHHHHHTSTTEEEEEEEEEEECSSEEEEEEEEEEEEECHHHHHHHHHTTTCEEEEE
T ss_pred             ceeEEEEEeecCCCCCHHH-HHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEE
Confidence            456778888 445555544 77779999999988754     33333  345576 89999999999999765543

>d2raqa1 d.58.61.1 (A:3-95) Uncharacterized protein MTH889 {Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: MTH889-like
family: MTH889-like
domain: Uncharacterized protein MTH889
species: Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=89.95  E-value=1.1  Score=26.29  Aligned_cols=65  Identities=15%  Similarity=0.303  Sum_probs=47.2

Q ss_pred             ceEEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEe-----cCCCEE--EEEec-CCHHHHHHHHHhcCCceEEe
Q 032170           23 MQTVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVN-----RKQSRV--TVTGY-VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        23 ~~~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd-----~~~~~v--~V~~~-~~~~~i~~~i~~~G~~~~~~   88 (146)
                      .+++.|.| --+-+ -.-.+-+.|.+++||..+++.     ..+..+  +|+|. ++-++|.+.|++.|.-..-.
T Consensus         4 iRRlVLDVlKPh~P-~i~e~A~~l~~~~gV~~VnitV~EiD~et~~i~itiEG~~idyd~i~~~IE~~Gg~IHSI   77 (93)
T d2raqa1           4 LIRIVLDILKPHEP-IIPEYAKYLSELRGVEGVNITLMEIDKETENIKVTIQGNDLDFDEITRAIESYGGSIHSV   77 (93)
T ss_dssp             EEEEEEEEECCSCS-CHHHHHHHHHHSTTCCEEEEEEEEECSSCEEEEEEEECSSCCHHHHHHHHHHTTCEEEEE
T ss_pred             eEEEEEEeecCCCC-CHHHHHHHHhccCCcceEEEEEEEecccceEEEEEEEecCCCHHHHHHHHHHcCCeEEEE
Confidence            56778888 55555 445677789999999887753     444444  45576 89999999999999765543

>d1jdqa_ d.68.3.3 (A:) Hypothetical protein TM0983 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: Hypothetical protein TM0983
species: Thermotoga maritima [TaxId: 2336]

Probab=89.54  E-value=1.2  Score=26.25  Aligned_cols=52  Identities=13%  Similarity=0.167  Sum_probs=40.6

Q ss_pred             EEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceE
Q 032170           26 VDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAE   86 (146)
Q Consensus        26 ~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~   86 (146)
                      .+|.+ |..|+...-+++++|.+++.         .+.+.|..+  ...+.|...+++.|+...
T Consensus        27 ~~LD~rG~~CP~Pll~~kkal~~l~~---------Ge~L~V~~dd~~a~~dI~~~~~~~g~~i~   81 (98)
T d1jdqa_          27 KTLDVRGEVCPVPDVETKRALQNMKP---------GEILEVWIDYPMSKERIPETVKKLGHEVL   81 (98)
T ss_dssp             EEEECSSCCSSHHHHHHHHHHHTCCT---------TCEEEEEESSCTHHHHHHHHHHHSSCCEE
T ss_pred             eeEECCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCcchHHHHHHHHHHcCCEEE
Confidence            47899 99999999999999998843         334445432  456789999999999873

>d1dcja_ d.68.3.3 (A:) SirA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: SirA
species: Escherichia coli [TaxId: 562]

Probab=87.59  E-value=0.94  Score=25.57  Aligned_cols=56  Identities=7%  Similarity=0.034  Sum_probs=42.3

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEec
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFWP   89 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~~   89 (146)
                      ..+|.+ |+.|+...-+++++|.+++.         .+.+.|..+  .....|...++..|+......
T Consensus         9 ~~~lD~~G~~CP~P~l~~k~al~~~~~---------G~~l~v~~dd~~a~~di~~~~~~~g~~~~~~~   67 (81)
T d1dcja_           9 DHTLDALGLRCPEPVMMVRKTVRNMQP---------GETLLIIADDPATTRDIPGFCTFMEHELVAKE   67 (81)
T ss_dssp             SEEECCTTCCTTHHHHHHHHHHHHCCT---------TCCEEEEECSTTHHHHHHHHHHHTTCEEEEEE
T ss_pred             CeEEECCCCCCCHHHHHHHHHHHhCCC---------CCEEEEEeCCCcHHHHHHHHHHHcCCEEEEEE
Confidence            457888 99999999999999998743         234444432  566788888999999875443

>d1je3a_ d.68.3.3 (A:) hypothetical protein YedF (EC005) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: IF3-like
superfamily: SirA-like
family: SirA-like
domain: hypothetical protein YedF (EC005)
species: Escherichia coli [TaxId: 562]

Probab=86.97  E-value=0.69  Score=27.31  Aligned_cols=55  Identities=9%  Similarity=0.045  Sum_probs=41.6

Q ss_pred             EEEEEE-cCcCHhHHHHHHHHHhCCCCceEEEEecCCCEEEEEec--CCHHHHHHHHHhcCCceEEe
Q 032170           25 TVDIKV-KMDCDGCERKVRNAVSSIRGAKSVEVNRKQSRVTVTGY--VDPNKVLKKVKSTGKRAEFW   88 (146)
Q Consensus        25 ~~~l~V-~m~C~~C~~~i~~~L~~~~GV~~v~vd~~~~~v~V~~~--~~~~~i~~~i~~~G~~~~~~   88 (146)
                      ..+|.+ |+.|+.-.-+++++|.+++-         .+.+.|..+  .....|...+++.|++....
T Consensus        27 d~~LD~~G~~CP~Pll~~k~~l~~l~~---------Ge~L~V~~dd~~a~~di~~~~~~~g~~v~~~   84 (97)
T d1je3a_          27 DYRLDMVGEPCPYPAVATLEAMPQLKK---------GEILEVVSDCPQSINNIPLDARNHGYTVLDI   84 (97)
T ss_dssp             EEEECSBCCSSSSSTHHHHHHTTTCCS---------SCEEEEEEBCSSSSCHHHHHHHHHTCSEEEE
T ss_pred             ceEEeCCCCcCCHHHHHHHHHHHcCCC---------CCEEEEEeCCccHHHHHHHHHHHcCCEEEEE
Confidence            457888 99999999999999998742         233444432  45678999999999988644

>d2cu6a1 d.52.8.2 (A:6-96) Hypothetical protein TTHB138 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TTHB138
species: Thermus thermophilus [TaxId: 274]

Probab=85.71  E-value=0.56  Score=27.36  Aligned_cols=34  Identities=29%  Similarity=0.570  Sum_probs=25.1

Q ss_pred             EEEEEcCcCHhH------HHHHHHHHhCCCCceEEEEecC
Q 032170           26 VDIKVKMDCDGC------ERKVRNAVSSIRGAKSVEVNRK   59 (146)
Q Consensus        26 ~~l~V~m~C~~C------~~~i~~~L~~~~GV~~v~vd~~   59 (146)
                      +.+.+.++..+|      ...++++|.+++||.+++|.+.
T Consensus        38 v~v~l~lt~~~cp~~~~i~~~i~~al~~l~gv~~V~V~~~   77 (91)
T d2cu6a1          38 AYVRMTLTTPGCPLHDSLGEAVRQALSRLPGVEEVEVEVT   77 (91)
T ss_dssp             EEEEECCSSSSCCSSCHHHHHHHHHHHTSTTCCEEEEEEC
T ss_pred             cEEEEEcCCCCCcHHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence            444445555555      6788999999999999888753

>d1uwda_ d.52.8.2 (A:) Hypothetical protein TM0487 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: Alpha-lytic protease prodomain-like
superfamily: Fe-S cluster assembly (FSCA) domain-like
family: PaaD-like
domain: Hypothetical protein TM0487
species: Thermotoga maritima [TaxId: 2336]

Probab=84.65  E-value=0.62  Score=27.84  Aligned_cols=34  Identities=26%  Similarity=0.435  Sum_probs=23.9

Q ss_pred             EEEEEcCcCHhH------HHHHHHHHhCCCCceEEEEecC
Q 032170           26 VDIKVKMDCDGC------ERKVRNAVSSIRGAKSVEVNRK   59 (146)
Q Consensus        26 ~~l~V~m~C~~C------~~~i~~~L~~~~GV~~v~vd~~   59 (146)
                      +.+.+.++.++|      ...++++|.+++||.+++|++.
T Consensus        43 V~v~~~lt~~~Cp~~~~i~~~i~~al~~~~gV~~v~V~i~   82 (102)
T d1uwda_          43 VKVLMTMTTPMCPLAGMILSDAEEAIKKIEGVNNVEVELT   82 (102)
T ss_dssp             EEEEECCSSSCCSSHHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred             eEEEEecCCCCCchHHHHHHHHHHHHHcCCCCceEEEEEE
Confidence            444444444444      5677899999999999988754