Citrus Sinensis ID: 032184

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-----
Protein Sequence
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFM
Secondary Structure (PSIPRED)
ccccccEEEEccccccccccccccccEEEcccccccccEEEEEcccccccHHHHHHccccEEEEEEEccccccccccccEEccccccccccccccccccccEEEEccccEEEEEccccccccccccccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccEEEEcccccccccccccccccEEEcccccccHHHHHHHHHcccccHHHHHHccccEEEEEEcccccccccccccEEccccccccccHHHHHcccHHEEEEccccEEEEcccccccccccHccccHHcccEEEEEEcHHcc
Coil and Loop (DISEMBL)
MSSSSVILYetrqgksvkppppvtskyivkdtgncspryircslnqipctenllklssmpsALMVQVLalpdpsedpipvvdfgesglvrccccrgyrnpfmefvdngksfvcnfcgldgrcldaderpelcrGTVEFAASREFM
Flexible Loop (DISEMBL)
MSSSSVILYetrqgksvkppppvtskyiVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFM
Low Complexity Region (SEG)
MSSSSVILYETRQGKSVKppppVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFM
Disordered region (IsUnstruct)
*************************KYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTV*********
Disordered Region (DISOPRED)
****SVI****RQ*****PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFM
Disordered Region (DISEMBL)
MSSSSVILY***********PPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFM
Disordered Region (DISPRO)
****SVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASRE*M
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADERPELCRGTVEFAASREFM
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	145	2.2.26 [Sep-21-2011]
Q9M081	1080	Protein transport protein	yes	no	0.993	0.133	0.607	2e-51
Q9M291	1096	Protein transport protein	no	no	0.993	0.131	0.588	1e-48
P53992	1094	Protein transport protein	yes	no	0.862	0.114	0.431	2e-24
O94855	1032	Protein transport protein	no	no	0.862	0.121	0.381	7e-22
Q1E6U9	932	Protein transport protein	N/A	no	0.772	0.120	0.393	3e-20
A1DP06	919	Protein transport protein	N/A	no	0.827	0.130	0.386	5e-20
Q0CSL7	904	Protein transport protein	N/A	no	0.827	0.132	0.386	6e-20
Q2ULI0	913	Protein transport protein	no	no	0.855	0.135	0.386	6e-20
Q4WLP1	919	Protein transport protein	no	no	0.827	0.130	0.379	9e-20
A2QSG6	919	Protein transport protein	no	no	0.827	0.130	0.386	9e-20

>sp|Q9M081|SC24B_ARATH Protein transport protein Sec24-like At4g32640 OS=Arabidopsis thaliana GN=At4g32640 PE=1 SV=3

 Score =  200 bits (509), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 113/158 (71%), Gaps = 14/158 (8%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                      DGR  D DERPELCRGTVEF A++E+M
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYM 498

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9M291|SC24C_ARATH Protein transport protein Sec24-like CEF OS=Arabidopsis thaliana GN=CEF PE=1 SV=3

 Score =  191 bits (485), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/158 (58%), Positives = 111/158 (70%), Gaps = 14/158 (8%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS I+YETR      PPPP T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct: 344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG    
Sbjct: 404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                      DGR  DADERPELCRGTV+F A++E+M
Sbjct: 464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYM 501

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII is composed of at least five proteins: the SEC23/24 complex, the SEC13/31 complex, and the protein SAR1. Acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Arabidopsis thaliana (taxid: 3702)

>sp|P53992|SC24C_HUMAN Protein transport protein Sec24C OS=Homo sapiens GN=SEC24C PE=1 SV=3

 Score =  110 bits (276), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 84/139 (60%), Gaps = 14/139 (10%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
           PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    
Sbjct: 354 PPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPY 413

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDA 125
           VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA
Sbjct: 414 VVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDA 473

Query: 126 DERPELCRGTVEFAASREF 144
            +RPEL  G+ EF A+ ++
Sbjct: 474 YDRPELSLGSYEFLATVDY 492

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|O94855|SC24D_HUMAN Protein transport protein Sec24D OS=Homo sapiens GN=SEC24D PE=1 SV=2

 Score =  102 bits (255), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 53/139 (38%), Positives = 82/139 (58%), Gaps = 14/139 (10%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
           PP VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++  A    +E P+ 
Sbjct: 292 PPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLY 351

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDA 125
           +V+ GESG VRC  C+ Y  PFM+F++ G+ + C FC             LD  GR LD 
Sbjct: 352 LVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDH 411

Query: 126 DERPELCRGTVEFAASREF 144
            E+PEL  G+ E+ A+ ++
Sbjct: 412 YEKPELSLGSYEYVATLDY 430

Component of the COPII coat, that covers ER-derived vesicles involved in transport from the endoplasmic reticulum to the Golgi apparatus. COPII acts in the cytoplasm to promote the transport of secretory, plasma membrane, and vacuolar proteins from the endoplasmic reticulum to the Golgi complex.

Homo sapiens (taxid: 9606)

>sp|Q1E6U9|SEC24_COCIM Protein transport protein SEC24 OS=Coccidioides immitis (strain RS) GN=SEC24 PE=3 SV=2

 Score = 97.4 bits (241), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 15/127 (11%)

Query: 32  TGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRC 91
           T NCS +++R +LN +P T +LLK S +P AL++Q       SEDP+P+V   +  + RC
Sbjct: 198 TANCSAKFVRSTLNAVPTTNSLLKKSRLPFALVIQPFTSLHDSEDPVPIVS--DQIISRC 255

Query: 92  CCCRGYRNPFMEFVDNGKSFVCNFCGLDG-------------RCLDADERPELCRGTVEF 138
             CR Y NPF+ F+D+G  + CN C L               + LD  +RPEL    VEF
Sbjct: 256 RRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQGFDWDATAQQALDRWQRPELNHAVVEF 315

Query: 139 AASREFM 145
            A +E+M
Sbjct: 316 VAPQEYM 322

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Coccidioides immitis (strain RS) (taxid: 246410)

>sp|A1DP06|SEC24_NEOFI Protein transport protein SEC24 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sec24 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 76/145 (52%), Gaps = 25/145 (17%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P          T NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------TANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYASLRD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG---RCLDADE--- 127
           +EDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C L     +  D D    
Sbjct: 229 AEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAALQ 286

Query: 128 -------RPELCRGTVEFAASREFM 145
                  RP+L    VEF A +E+M
Sbjct: 287 KPADRSLRPDLNHAVVEFVAPQEYM 311

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) (taxid: 331117)

>sp|Q0CSL7|SEC24_ASPTN Protein transport protein sec24 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sec24 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 25/145 (17%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P            NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 164 GTSVYPSP----------YANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYAALHD 213

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG---RCLDADE--- 127
           SEDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C L     +  D D    
Sbjct: 214 SEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDTALQ 271

Query: 128 -------RPELCRGTVEFAASREFM 145
                  RP+L    VEF A +E+M
Sbjct: 272 KPADRSLRPDLNHSVVEFVAPQEYM 296

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus terreus (strain NIH 2624 / FGSC A1156) (taxid: 341663)

>sp|Q2ULI0|SEC24_ASPOR Protein transport protein sec24 OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40) GN=sec24 PE=3 SV=1

 Score = 96.3 bits (238), Expect = 6e-20,   Method: Composition-based stats.
 Identities = 56/145 (38%), Positives = 76/145 (52%), Gaps = 21/145 (14%)

Query: 19  PPPPV-----TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           PPPP+     TS Y    T NC P+Y+R +LN +P T +LLK S +P AL++Q       
Sbjct: 164 PPPPIVLPQGTSVY-PSPTANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYGALHD 222

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG------------- 120
           SED +PV+   +  + RC  CR Y NPF+ F+D+G  + CN C L               
Sbjct: 223 SEDQVPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDTTLQ 280

Query: 121 RCLDADERPELCRGTVEFAASREFM 145
           R  D   RP+L    VEF A +E+M
Sbjct: 281 RPADRALRPDLNHAVVEFVAPQEYM 305

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus oryzae (strain ATCC 42149 / RIB 40) (taxid: 510516)

>sp|Q4WLP1|SEC24_ASPFU Protein transport protein sec24 OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) GN=sec24 PE=3 SV=2

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Composition-based stats.
 Identities = 55/145 (37%), Positives = 75/145 (51%), Gaps = 25/145 (17%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P          T NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------TANCPPKYVRSTLNAVPTTHSLLKKSKLPFALVIQPYASLRD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG------------- 120
           +EDPIPV+   +  + RC  CR Y NPF+ F+D+G  + CN C L               
Sbjct: 229 AEDPIPVIP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDAALQ 286

Query: 121 RCLDADERPELCRGTVEFAASREFM 145
           +  D   RP+L    VEF A +E+M
Sbjct: 287 KPADRSLRPDLNHAVVEFVAPQEYM 311

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Neosartorya fumigata (strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100) (taxid: 330879)

>sp|A2QSG6|SEC24_ASPNC Protein transport protein sec24 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=sec24 PE=3 SV=1

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 56/145 (38%), Positives = 75/145 (51%), Gaps = 25/145 (17%)

Query: 14  GKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDP 73
           G SV P P            NC P+Y+R +LN +P T +LLK S +P AL++Q  A    
Sbjct: 179 GTSVYPSP----------YANCPPKYVRSTLNAVPTTSSLLKKSKLPFALVIQPYAALHD 228

Query: 74  SEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLDG---RCLDADE--- 127
           SEDP+PVV   +  + RC  CR Y NPF+ F+D+G  + CN C L     +  D D    
Sbjct: 229 SEDPVPVVP--DQVISRCRRCRSYINPFVTFLDHGHRWRCNMCNLTNDVPQAFDWDTALQ 286

Query: 128 -------RPELCRGTVEFAASREFM 145
                  RP+L    VEF A +E+M
Sbjct: 287 KPADRSLRPDLNHSVVEFVAPQEYM 311

Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
224123334	1103	predicted protein [Populus trichocarpa]	0.979	0.128	0.634	2e-52
359493759	1124	PREDICTED: protein transport protein Sec	1.0	0.129	0.622	3e-52
255542372	1094	Protein transport protein Sec24C, putati	1.0	0.132	0.616	2e-51
255545386	1056	Protein transport protein Sec24C, putati	0.986	0.135	0.605	7e-50
334187094	1080	sec24-like transport protein [Arabidopsi	0.993	0.133	0.607	2e-49
443609449	1092	Sec24-like transport protein [Arabidopsi	0.993	0.131	0.607	2e-49
7270168	1069	putative protein [Arabidopsis thaliana]	0.993	0.134	0.607	2e-49
7486407	1008	hypothetical protein F4D11.160 - Arabido	0.993	0.142	0.607	2e-49
224131342	1080	predicted protein [Populus trichocarpa]	0.979	0.131	0.615	2e-49
356534416	1085	PREDICTED: protein transport protein Sec	0.979	0.130	0.608	4e-49

>gi|224123334|ref|XP_002319053.1| predicted protein [Populus trichocarpa] gi|222857429|gb|EEE94976.1| predicted protein [Populus trichocarpa]

 Score =  209 bits (533), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 99/156 (63%), Positives = 115/156 (73%), Gaps = 14/156 (8%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S MP AL
Sbjct: 328 SSVILHDTRAGNQANPPPPATSDYIVSDTGNCSPRYMRCTINQIPCTVDLLSTSGMPLAL 387

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL----- 118
           +VQ LALP PSEDP+ VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG      
Sbjct: 388 LVQPLALPHPSEDPVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRQFICNLCGFTDETP 447

Query: 119 ---------DGRCLDADERPELCRGTVEFAASREFM 145
                    DGR  DADERPELCRGTVEF A++E+M
Sbjct: 448 RDYHCNLGPDGRRRDADERPELCRGTVEFVATKEYM 483

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493759|ref|XP_002279640.2| PREDICTED: protein transport protein Sec24-like At4g32640-like [Vitis vinifera] gi|302143220|emb|CBI20515.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (533), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 99/159 (62%), Positives = 118/159 (74%), Gaps = 14/159 (8%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + ++SVIL+ETRQG    PPPP TS YIV+DTGNCSPRY+RC++NQIPCT +LL  S M 
Sbjct: 372 IPNTSVILHETRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTADLLTTSGMQ 431

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL-- 118
            AL+VQ LALP PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG   
Sbjct: 432 LALLVQPLALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTD 491

Query: 119 ------------DGRCLDADERPELCRGTVEFAASREFM 145
                       DGR  DA+ERPELCRGTVEF AS+E+M
Sbjct: 492 ETPRDYHCNLGPDGRRRDAEERPELCRGTVEFVASKEYM 530

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542372|ref|XP_002512249.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223548210|gb|EEF49701.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score =  206 bits (524), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 98/159 (61%), Positives = 116/159 (72%), Gaps = 14/159 (8%)

Query: 1   MSSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMP 60
           + SSSV L++TRQG    PPPP TS YIV+DTGNCSPRY+RC++NQIPCT +L+  S M 
Sbjct: 340 IPSSSVTLHDTRQGNQANPPPPATSDYIVRDTGNCSPRYMRCTINQIPCTVDLVNTSGMQ 399

Query: 61  SALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL-- 118
            AL+VQ  ALP PSE+PI VVDFGESG VRC  C+GY NPFM+F+D GK F+CN CG   
Sbjct: 400 LALLVQPFALPHPSEEPIQVVDFGESGPVRCSRCKGYINPFMKFIDQGKRFICNLCGFTD 459

Query: 119 ------------DGRCLDADERPELCRGTVEFAASREFM 145
                       DGR  DADERPELCRGTVEF A++E+M
Sbjct: 460 ETPRDYQCNLGPDGRRRDADERPELCRGTVEFVATKEYM 498

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545386|ref|XP_002513753.1| Protein transport protein Sec24C, putative [Ricinus communis] gi|223546839|gb|EEF48336.1| Protein transport protein Sec24C, putative [Ricinus communis]

 Score =  201 bits (511), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 95/157 (60%), Positives = 115/157 (73%), Gaps = 14/157 (8%)

Query: 3   SSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSA 62
           SS++I++ETRQG    PPPP TS+Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  A
Sbjct: 339 SSTIIVHETRQGNQANPPPPATSEYMVRDTGNCSPRYMRCTINQIPCTVDLLNTSGMQLA 398

Query: 63  LMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL---- 118
           L+VQ LAL  PSE+PI VVDFGESG VRC  C+GY NPFM F+D G+ F+CN CG     
Sbjct: 399 LLVQPLALLPPSEEPIQVVDFGESGPVRCSRCKGYINPFMRFIDQGRRFICNLCGFTDET 458

Query: 119 ----------DGRCLDADERPELCRGTVEFAASREFM 145
                     DGR  DADERPELCRG VEF A++E+M
Sbjct: 459 PRDYHCNLGPDGRRRDADERPELCRGAVEFVATKEYM 495

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334187094|ref|NP_194990.5| sec24-like transport protein [Arabidopsis thaliana] gi|334187096|ref|NP_001119101.5| sec24-like transport protein [Arabidopsis thaliana] gi|347595780|sp|Q9M081.3|SC24B_ARATH RecName: Full=Protein transport protein Sec24-like At4g32640 gi|332660694|gb|AEE86094.1| sec24-like transport protein [Arabidopsis thaliana] gi|332660695|gb|AEE86095.1| sec24-like transport protein [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 113/158 (71%), Gaps = 14/158 (8%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                      DGR  D DERPELCRGTVEF A++E+M
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYM 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|443609449|dbj|BAM76809.1| Sec24-like transport protein [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 113/158 (71%), Gaps = 14/158 (8%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                      DGR  D DERPELCRGTVEF A++E+M
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYM 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7270168|emb|CAB79981.1| putative protein [Arabidopsis thaliana]

 Score =  200 bits (509), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 113/158 (71%), Gaps = 14/158 (8%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                      DGR  D DERPELCRGTVEF A++E+M
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYM 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|7486407|pir||T04462 hypothetical protein F4D11.160 - Arabidopsis thaliana gi|3063706|emb|CAA18597.1| putative protein [Arabidopsis thaliana]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/158 (60%), Positives = 113/158 (71%), Gaps = 14/158 (8%)

Query: 2   SSSSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
           SSSS  ++ETRQ     PPPP TS Y+V+DTGNCSPRY+RC++NQIPCT +LL  S M  
Sbjct: 341 SSSSPTVFETRQSNQANPPPPATSDYVVRDTGNCSPRYMRCTINQIPCTVDLLSTSGMQL 400

Query: 62  ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
           ALMVQ LAL  PSE+PI VVDFGE G VRC  C+GY NPFM+F+D G+ F+CNFCG    
Sbjct: 401 ALMVQPLALSHPSEEPIQVVDFGEGGPVRCSRCKGYINPFMKFIDQGRKFICNFCGYTDE 460

Query: 119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                      DGR  D DERPELCRGTVEF A++E+M
Sbjct: 461 TPRDYHCNLGPDGRRRDVDERPELCRGTVEFVATKEYM 498

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131342|ref|XP_002328515.1| predicted protein [Populus trichocarpa] gi|222838230|gb|EEE76595.1| predicted protein [Populus trichocarpa]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 96/156 (61%), Positives = 112/156 (71%), Gaps = 14/156 (8%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL++TR G    PPPP TS YIV DTGNCSPRY+RC++NQIPCT +LL  S M  AL
Sbjct: 321 SSVILHDTRAGNQANPPPPATSDYIVTDTGNCSPRYMRCTINQIPCTVDLLSTSGMQLAL 380

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL----- 118
           +VQ LALP  SE+ + VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG      
Sbjct: 381 LVQPLALPHSSEEAVQVVDFGESGPVRCSRCKGYINPFMKFIDQGRRFICNLCGFTDETP 440

Query: 119 ---------DGRCLDADERPELCRGTVEFAASREFM 145
                    DGR  DADERPELCRGTVEF A++EFM
Sbjct: 441 RDYLCNLGPDGRRRDADERPELCRGTVEFVATKEFM 476

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356534416|ref|XP_003535751.1| PREDICTED: protein transport protein Sec24-like At4g32640-like [Glycine max]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 95/156 (60%), Positives = 113/156 (72%), Gaps = 14/156 (8%)

Query: 4   SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSAL 63
           SSVIL+ETRQG     PPP TS+YI +DTGNCSPRY++C++NQIP T +LL  S M  A+
Sbjct: 333 SSVILHETRQGNQATIPPPATSEYIARDTGNCSPRYMKCTINQIPFTADLLTTSGMQLAM 392

Query: 64  MVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL----- 118
           +VQ LALP PSE+PI VVDFGESG VRC  C+ Y NPFM+F+D G+ F+CN CG      
Sbjct: 393 LVQPLALPHPSEEPIQVVDFGESGPVRCSRCKAYINPFMKFIDQGRRFICNLCGFSDETP 452

Query: 119 ---------DGRCLDADERPELCRGTVEFAASREFM 145
                    DGR  DADERPELCRGTVEF A++EFM
Sbjct: 453 RDYHCNLGPDGRRRDADERPELCRGTVEFVATKEFM 488

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	145
TAIR|locus:2100202	1096	CEF "AT3G44340" [Arabidopsis t	0.993	0.131	0.563	1.6e-40
ZFIN|ZDB-GENE-030131-4487	1241	sec24c "SEC24 family, member C	0.841	0.098	0.419	1.8e-22
UNIPROTKB|E1BIU0	1094	SEC24C "Uncharacterized protei	0.841	0.111	0.433	5e-22
UNIPROTKB|E7EP00	975	SEC24C "Protein transport prot	0.841	0.125	0.426	5.4e-22
UNIPROTKB|G5EA31	1042	SEC24C "SEC24 related gene fam	0.841	0.117	0.426	6e-22
UNIPROTKB|P53992	1094	SEC24C "Protein transport prot	0.841	0.111	0.426	6.4e-22
UNIPROTKB|E2RE90	1096	SEC24C "Uncharacterized protei	0.841	0.111	0.426	6.5e-22
UNIPROTKB|J9JHK6	1119	SEC24C "Uncharacterized protei	0.841	0.109	0.426	6.7e-22
UNIPROTKB|E1BUD8	1119	SEC24C "Uncharacterized protei	0.834	0.108	0.430	8.5e-22
ASPGD|ASPL0000039645	1031	AN3080 [Emericella nidulans (t	0.813	0.114	0.409	9.6e-22

TAIR|locus:2100202 CEF "AT3G44340" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 1.6e-40, P = 1.6e-40
 Identities = 89/158 (56%), Positives = 107/158 (67%)

Query:     2 SSSSVILYETRQGKSVKXXXXVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPS 61
             SSSS I+YETR           T  YI +DTGN SPRY+RC++NQIPCT +LL  S M  
Sbjct:   344 SSSSPIVYETRVENKANPPPPTTVDYITRDTGNSSPRYMRCTINQIPCTVDLLSTSGMQL 403

Query:    62 ALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--- 118
             AL+VQ +AL  PSE+PI VVDFGESG VRC  C+GY NPFM+F+D G+ F+CN CG    
Sbjct:   404 ALIVQPMALSHPSEEPIQVVDFGESGPVRCSRCKGYVNPFMKFIDQGRKFICNLCGYTDE 463

Query:   119 -----------DGRCLDADERPELCRGTVEFAASREFM 145
                        DGR  DADERPELCRGTV+F A++E+M
Sbjct:   464 TPRDYQCNLGPDGRRRDADERPELCRGTVDFVATKEYM 501

GO:0005215 "transporter activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=ISS

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006979 "response to oxidative stress" evidence=IEP

GO:0005829 "cytosol" evidence=IDA

ZFIN|ZDB-GENE-030131-4487 sec24c "SEC24 family, member C (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 274 (101.5 bits), Expect = 1.8e-22, P = 1.8e-22
 Identities = 57/136 (41%), Positives = 81/136 (59%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+++ VKD GN SPRYIRC+   +PC  ++ K S +P A +++ LA   P E P  +VD
Sbjct:   504 VTTRFQVKDQGNASPRYIRCTAYNMPCNSDMAKQSQVPLAAVIKPLATLPPDESPPYLVD 563

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +D  ER
Sbjct:   564 HGESGPIRCNRCKAYMCPFMQFIEGGRRFQCGFCSCVTEVPPHYFQHLDHTGKRVDCYER 623

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   624 PELSMGSYEFMATVDY 639

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

UNIPROTKB|E1BIU0 SEC24C "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 269 (99.8 bits), Expect = 5.0e-22, P = 5.0e-22
 Identities = 59/136 (43%), Positives = 82/136 (60%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+FV+ G+ F C FC             LD  G+ +DA +R
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFVEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 476

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   477 PELSLGSYEFLATVDY 492

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E7EP00 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 5.4e-22, P = 5.4e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   238 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 297

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   298 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 357

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   358 PELSLGSYEFLATVDY 373

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|G5EA31 SEC24C "SEC24 related gene family, member C (S. cerevisiae), isoform CRA_b" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 6.0e-22, P = 6.0e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 476

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   477 PELSLGSYEFLATVDY 492

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|P53992 SEC24C "Protein transport protein Sec24C" [Homo sapiens (taxid:9606)]

 Score = 268 (99.4 bits), Expect = 6.4e-22, P = 6.4e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   357 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 416

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   417 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 476

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   477 PELSLGSYEFLATVDY 492

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000139 "Golgi membrane" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=NAS;TAS

GO:0030127 "COPII vesicle coat" evidence=NAS

GO:0003674 "molecular_function" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0002474 "antigen processing and presentation of peptide antigen via MHC class I" evidence=TAS

GO:0005789 "endoplasmic reticulum membrane" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0012507 "ER to Golgi transport vesicle membrane" evidence=TAS

GO:0016044 "cellular membrane organization" evidence=TAS

GO:0018279 "protein N-linked glycosylation via asparagine" evidence=TAS

GO:0019886 "antigen processing and presentation of exogenous peptide antigen via MHC class II" evidence=TAS

GO:0043687 "post-translational protein modification" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0048208 "COPII vesicle coating" evidence=TAS

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0043231 "intracellular membrane-bounded organelle" evidence=IDA

UNIPROTKB|E2RE90 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 6.5e-22, P = 6.5e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   359 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 418

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   419 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 478

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   479 PELSLGSYEFLATVDY 494

GO:0005634 "nucleus" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|J9JHK6 SEC24C "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 268 (99.4 bits), Expect = 6.7e-22, P = 6.7e-22
 Identities = 58/136 (42%), Positives = 82/136 (60%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct:   382 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 441

Query:    83 FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
              GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct:   442 HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 501

Query:   129 PELCRGTVEFAASREF 144
             PEL  G+ EF A+ ++
Sbjct:   502 PELSLGSYEFLATVDY 517

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

UNIPROTKB|E1BUD8 SEC24C "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 267 (99.0 bits), Expect = 8.5e-22, P = 8.5e-22
 Identities = 59/137 (43%), Positives = 84/137 (61%)

Query:    23 VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP-VV 81
             VT+ ++VKD GN SPRYIRC+   IPCT ++ K S +P A +++ LA   P E+ +P +V
Sbjct:   382 VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQSQVPLAAVIKPLATLPP-EETLPYLV 440

Query:    82 DFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADE 127
             D GESG VRC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +D  +
Sbjct:   441 DHGESGPVRCNRCKAYMCPFMQFIEGGRRFQCCFCSCVTEVPAHYFQHLDHTGKRVDFYD 500

Query:   128 RPELCRGTVEFAASREF 144
             RPEL  G+ EF A+ ++
Sbjct:   501 RPELSLGSYEFLATVDY 517

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

ASPGD|ASPL0000039645 AN3080 [Emericella nidulans (taxid:162425)]

 Score = 266 (98.7 bits), Expect = 9.6e-22, P = 9.6e-22
 Identities = 54/132 (40%), Positives = 75/132 (56%)

Query:    27 YIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES 86
             ++  D GN SP+Y R +LN IP + + L  + +P  +++Q LA  DP E PIPV+DFG++
Sbjct:   242 FVAHDQGNSSPKYARLTLNNIPSSSDFLSSTGLPLGMILQPLARLDPGEQPIPVLDFGDA 301

Query:    87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFC--------------GLDGRCLDADERPELC 132
             G  RC  CR Y NPFM F   G  FVCN C               + G  +D  +RPEL 
Sbjct:   302 GPPRCRRCRTYINPFMSFRSGGNKFVCNMCTFPNDVPPEYFAPIDVSGARIDRMQRPELM 361

Query:   133 RGTVEFAASREF 144
             +GTVEF   +++
Sbjct:   362 QGTVEFLVPKDY 373

GO:0008270 "zinc ion binding" evidence=IEA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=IEA

GO:0030127 "COPII vesicle coat" evidence=IEA

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00027410001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (1036 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00003489001	SubName- Full=Chromosome undetermined scaffold_144, whole genome shotgun sequence; (763 aa)				•	•	•	•	•	0.707
	GSVIVG00000803001	SubName- Full=Chromosome undetermined scaffold_108, whole genome shotgun sequence; (756 aa)				•	•	•	•	•	0.663
	GSVIVG00020123001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (755 aa)				•	•	•	•	•	0.620
	GSVIVG00028684001	SubName- Full=Chromosome chr13 scaffold_45, whole genome shotgun sequence; (1125 aa)				•		•	•		0.475
	GSVIVG00016738001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (865 aa)						•			0.456
	GSVIVG00036398001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (889 aa)				•			•		0.450

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	145
COG5028	861	COG5028, COG5028, Vesicle coat complex COPII, subu	5e-26
pfam04810	39	pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger	7e-08
PTZ00395	1560	PTZ00395, PTZ00395, Sec24-related protein; Provisi	3e-07

>gnl|CDD|227361 COG5028, COG5028, Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

 Score =  101 bits (254), Expect = 5e-26
 Identities = 49/140 (35%), Positives = 77/140 (55%), Gaps = 16/140 (11%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
            PP+T+ ++  +  NCSP+Y+R ++  IP T +LLK S +P  L+++      P EDP+P
Sbjct: 133 VPPLTTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVP 192

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDA 125
           +V+ G   +VRC  CR Y NPF++F++ G+ + CN C                +    D 
Sbjct: 193 LVEDGS--IVRCRRCRSYINPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDPRSDR 250

Query: 126 DERPELCRGTVEFAASREFM 145
             RPEL  G V+F A +E+ 
Sbjct: 251 YSRPELKSGVVDFLAPKEYS 270

Length = 861

>gnl|CDD|203092 pfam04810, zf-Sec23_Sec24, Sec23/Sec24 zinc finger

 Score = 45.6 bits (109), Expect = 7e-08
 Identities = 14/29 (48%), Positives = 18/29 (62%)

Query: 89  VRCCCCRGYRNPFMEFVDNGKSFVCNFCG 117
           VRC  CR Y NP+ +F   G+ + CN CG
Sbjct: 2   VRCRRCRAYLNPYCQFDFGGRRWTCNLCG 30

COPII-coated vesicles carry proteins from the endoplasmic reticulum to the Golgi complex. This vesicular transport can be reconstituted by using three cytosolic components containing five proteins: the small GTPase Sar1p, the Sec23p/24p complex, and the Sec13p/Sec31p complex. This domain is found to be zinc binding domain. Length = 39

>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional

 Score = 48.1 bits (114), Expect = 3e-07
 Identities = 35/107 (32%), Positives = 48/107 (44%), Gaps = 8/107 (7%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSE--DP 77
           PP     YI  DTG   PR+++ +L QIP     LKLS +P  ++V   A  +  E  D 
Sbjct: 635 PPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGEGIDK 694

Query: 78  IPVVDFGESG-----LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD 119
           I + D          ++RC  C GY +  +   D   S  C FC  D
Sbjct: 695 IDMKDIINDKEENIEILRCPKCLGYLHATI-LEDISSSVQCVFCDTD 740

Length = 1560

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	145
KOG1984	1007	consensus Vesicle coat complex COPII, subunit SFB3	100.0
COG5028	861	Vesicle coat complex COPII, subunit SEC24/subunit	100.0
KOG1985	887	consensus Vesicle coat complex COPII, subunit SEC2	100.0
PLN00162	761	transport protein sec23; Provisional	99.95
PTZ00395	1560	Sec24-related protein; Provisional	99.93
KOG1986	745	consensus Vesicle coat complex COPII, subunit SEC2	99.81
COG5047	755	SEC23 Vesicle coat complex COPII, subunit SEC23 [I	99.76
PF04810	40	zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro:	99.57
PF09082	68	DUF1922: Domain of unknown function (DUF1922); Int	90.99
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	89.56
PF13719	37	zinc_ribbon_5: zinc-ribbon domain	86.06
smart00661	52	RPOL9 RNA polymerase subunit 9.	81.18
TIGR01053	31	LSD1 zinc finger domain, LSD1 subclass. This model	80.39

>KOG1984 consensus Vesicle coat complex COPII, subunit SFB3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1e-41  Score=304.21  Aligned_cols=129  Identities=54%  Similarity=1.163  Sum_probs=124.4

Q ss_pred             CCCCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCc
Q 032184           17 VKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRG   96 (145)
Q Consensus        17 ~~~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~a   96 (145)
                      ..+||++||+|++.|||||+|+|||+|+|+||.+.++++.++||||++|+|||.+.+.|+++|+|++++.+++||++|+|
T Consensus       267 ~~~PPl~TTd~~~~DqGN~sPr~mr~T~Y~iP~T~Dl~~as~iPLalvIqPfa~l~p~E~~~~vVd~g~sgPvRC~RCka  346 (1007)
T KOG1984|consen  267 AQPPPLVTTDFFIQDQGNCSPRFMRCTMYTIPCTNDLLKASQIPLALVIQPFATLTPNEAPVPVVDLGESGPVRCNRCKA  346 (1007)
T ss_pred             CCCCCCcccceEEeccCCCCcchheeecccCCccHhHHHhcCCcceeEecccccCCcccCCCceecCCCCCCcchhhhhh
Confidence            34799999999999999999999999999999999999999999999999999998888999999999999999999999


Q ss_pred             eEcCceEEEeCCceEEeeCCCC--------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184           97 YRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus        97 YiNp~~~~~~~g~~w~C~lC~~--------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      |||||++|+++|++|+||||+.              +|+|.|.+.||||..|||||+|+++||
T Consensus       347 YinPFmqF~~~gr~f~Cn~C~~~n~vp~~yf~~L~~~grr~D~~erpEL~~Gt~dfvatk~Y~  409 (1007)
T KOG1984|consen  347 YINPFMQFIDGGRKFICNFCGSKNQVPDDYFNHLGPTGRRVDVEERPELCLGTVDFVATKDYC  409 (1007)
T ss_pred             hcCcceEEecCCceEEecCCCccccCChhhcccCCCcccccccccCchhcccccceeeehhhh
Confidence            9999999999999999999998              477889999999999999999999996

>COG5028 Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

Probab=100.00  E-value=5e-35  Score=259.12  Aligned_cols=124  Identities=39%  Similarity=0.829  Sum_probs=113.3

Q ss_pred             CCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceE
Q 032184           19 PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYR   98 (145)
Q Consensus        19 ~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYi   98 (145)
                      .||+ ++.++..+++||+|+|+|+|+++||.+.+++++++||||++|+||.++.+++..+|+++  +..|+||++||+|+
T Consensus       133 ~ppl-tt~~~~~e~~n~~p~yvrsT~yaiP~t~dl~~~skiPfgLVI~Pf~~l~~e~~~vpl~~--d~~ivRCrrCrsYi  209 (861)
T COG5028         133 VPPL-TTNFVGSEQSNCSPKYVRSTMYAIPETNDLLKKSKIPFGLVIRPFLELYPEEDPVPLVE--DGSIVRCRRCRSYI  209 (861)
T ss_pred             CCCc-ccceeeeccCCCCHHHHHHHHhhCCCchhHHHhcCCCceEEeehhhhcCccCCCCccCC--CCcchhhhhhHhhc
Confidence            4666 99999999999999999999999999999999999999999999999887777888876  34489999999999


Q ss_pred             cCceEEEeCCceEEeeCCCC--------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184           99 NPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus        99 Np~~~~~~~g~~w~C~lC~~--------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      |||.+|+.+|++|+||+|+.              +..|.|.+.|+||.+++|||+||++|+
T Consensus       210 NPfv~fi~~g~kw~CNiC~~kN~vp~~~~~~~~~~~~r~d~~~r~El~~~vvdf~ap~~Y~  270 (861)
T COG5028         210 NPFVQFIEQGRKWRCNICRSKNDVPEGFDNPSGPNDPRSDRYSRPELKSGVVDFLAPKEYS  270 (861)
T ss_pred             CceEEEecCCcEEEEeeccccccCcccccCcCCCCCccccccccchhhceeeEEeccccee
Confidence            99999999999999999998              234567899999999999999999996

>KOG1985 consensus Vesicle coat complex COPII, subunit SEC24/subunit SFB2 [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-34  Score=253.42  Aligned_cols=112  Identities=46%  Similarity=0.883  Sum_probs=102.7

Q ss_pred             ccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceEEEeCCce
Q 032184           31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS  110 (145)
Q Consensus        31 d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~~~~~g~~  110 (145)
                      ...||+|+|+|+|+++||++++++++++||||++|+||++++ +..++|++.  ...|+||++||+|||||+.|++.|++
T Consensus       164 ~~~nc~p~y~RsTl~~iP~t~sLl~kskLPlglvv~Pf~~~~-d~~~~p~~~--~~~IvRCr~CRtYiNPFV~fid~gr~  240 (887)
T KOG1985|consen  164 ESSNCSPSYVRSTLSAIPQTQSLLKKSKLPLGLVVHPFAHLD-DIDPLPVIT--STLIVRCRRCRTYINPFVEFIDQGRR  240 (887)
T ss_pred             cccCCCHHHHHHHHHhCCccHHHHHhcCCCceEEEeeccccc-ccCCCCccc--CCceeeehhhhhhcCCeEEecCCCce
Confidence            568999999999999999999999999999999999999876 334567665  57899999999999999999999999


Q ss_pred             EEeeCCCC-------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184          111 FVCNFCGL-------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus       111 w~C~lC~~-------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      |+||+|+.             ++.+.++.+||||++++|||+||+|||
T Consensus       241 WrCNlC~~~NdvP~~f~~~~~t~~~~~~~~RpEl~~s~vE~iAP~eYm  288 (887)
T KOG1985|consen  241 WRCNLCGRVNDVPDDFDWDPLTGAYGDPYSRPELTSSVVEFIAPSEYM  288 (887)
T ss_pred             eeechhhhhcCCcHHhhcCccccccCCcccCccccceeEEEecCcccc
Confidence            99999999             355789999999999999999999998

>PLN00162 transport protein sec23; Provisional

Probab=99.95  E-value=3.8e-28  Score=220.07  Aligned_cols=102  Identities=24%  Similarity=0.323  Sum_probs=90.1

Q ss_pred             CCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceEEEeCCceEEe
Q 032184           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVC  113 (145)
Q Consensus        34 n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~~~~~g~~w~C  113 (145)
                      ..+.++||+|||+||.++.++++++|||||+||||++..    ++|+++   .+|+||++|+|||||||+|+.++++|+|
T Consensus         6 ~e~~~gvR~s~n~~P~t~~~~~~~~iPlg~v~tPl~~~~----~vp~v~---~~pvRC~~CraylNPf~~~d~~~~~W~C   78 (761)
T PLN00162          6 LEAIDGVRMSWNVWPSSKIEASKCVIPLAALYTPLKPLP----ELPVLP---YDPLRCRTCRAVLNPYCRVDFQAKIWIC   78 (761)
T ss_pred             hcccCceEeeeecCCCCHHHHhcCCCCeEEEEecCCcCC----CCCcCC---CCCCccCCCcCEECCceEEecCCCEEEc
Confidence            356799999999999999999999999999999999763    388887   6799999999999999999999999999


Q ss_pred             eCCCCC----Ccc---CCCCCCCcc--CcceEEEEecC
Q 032184          114 NFCGLD----GRC---LDADERPEL--CRGTVEFAASR  142 (145)
Q Consensus       114 ~lC~~~----~~~---~~~~~rPEL--~~~tvE~~~p~  142 (145)
                      |||+..    ..+   .+.+.+|||  +++||||++|+
T Consensus        79 ~~C~~~N~~P~~Y~~~~~~~~p~EL~p~~~TvEY~~p~  116 (761)
T PLN00162         79 PFCFQRNHFPPHYSSISETNLPAELFPQYTTVEYTLPP  116 (761)
T ss_pred             cCCCCCCCCchHhcccCccCCChhhcCCceeEEEECCC
Confidence            999992    222   245788999  99999999995

>PTZ00395 Sec24-related protein; Provisional

Probab=99.93  E-value=2.4e-26  Score=213.13  Aligned_cols=136  Identities=30%  Similarity=0.515  Sum_probs=114.8

Q ss_pred             CCceEEeccCCCCCCCCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceecc
Q 032184            4 SSVILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDF   83 (145)
Q Consensus         4 ~~~~~~~t~~~~~~~~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~   83 (145)
                      .....|+|+++..   ||+.+++|+++|+|||+|+|||+|||.||.+.++++.++|||||+++|||.+.+++ .||.++.
T Consensus       622 ~~~~~~~t~k~~~---pp~~~~~~~~~dtgn~dP~~~r~tmY~iP~~~~~~~~~~iP~gi~v~Pfa~~~~~e-~~~~~~~  697 (1560)
T PTZ00395        622 KNLKVFETCKYIS---PPSYYQPYISIDTGKADPRFLKSTLYQIPLFSETLKLSQIPFGIIVNPFACLNEGE-GIDKIDM  697 (1560)
T ss_pred             ccchhhhhccCCC---CCCCCCceEEeecCCCChhhhhhhhhcCcchHHHHHhcCCCceeecchhhhcCCCC-CCcccch
Confidence            4567899998766   79999999999999999999999999999999999999999999999999987765 4888776


Q ss_pred             C--------CCCeeeCCCCCceEcCceEEEeCCceEEeeCCCCC------------------Ccc-CCCC----CCCccC
Q 032184           84 G--------ESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGLD------------------GRC-LDAD----ERPELC  132 (145)
Q Consensus        84 ~--------~~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~~------------------~~~-~~~~----~rPEL~  132 (145)
                      .        ..+|+||.+|++|+|+++.++.. +++.|+||.+.                  +++ .+.+    ..--|.
T Consensus       698 ~~~~~d~~~~~~~~rc~~c~~y~~~~~~~~~~-~~~~c~~c~~~~~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  776 (1560)
T PTZ00395        698 KDIINDKEENIEILRCPKCLGYLHATILEDIS-SSVQCVFCDTDFLINENVLFDIFQYNEKIGHKESDHNEHGNSLSPLL  776 (1560)
T ss_pred             hhcccchhhccceeecchhHhhhcchheeccc-ceEEEEecCCcchhhHHHHHHHHHHhhhhccccccccccccccchhh
Confidence            4        24799999999999999999866 78999999991                  111 1222    223578


Q ss_pred             cceEEEEecCCC
Q 032184          133 RGTVEFAASREF  144 (145)
Q Consensus       133 ~~tvE~~~p~~Y  144 (145)
                      +|+||+++|+.|
T Consensus       777 ~~~~~~~~~~~~  788 (1560)
T PTZ00395        777 KGSVDIIIPPIY  788 (1560)
T ss_pred             cCceeEEccchh
Confidence            999999999987

>KOG1986 consensus Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.81  E-value=1e-20  Score=167.17  Aligned_cols=104  Identities=24%  Similarity=0.356  Sum_probs=90.1

Q ss_pred             CCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceEEEeCCceEE
Q 032184           33 GNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFV  112 (145)
Q Consensus        33 ~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~~~~~g~~w~  112 (145)
                      .+...+.||+|||+||.++....++.+|++++++||++...    +|.+.   ++|+||++|+||+||||.++.+.+.|.
T Consensus         5 ~~e~~dGvR~twnvwPs~~~~~~~~vvPla~lytPl~e~~~----~~~~~---y~P~~C~~C~AvlNPyc~vd~~a~~W~   77 (745)
T KOG1986|consen    5 DIEEIDGVRFTWNVWPSTRAEASRTVVPLACLYTPLKERPD----LPPIQ---YDPLRCSKCGAVLNPYCSVDFRAKSWI   77 (745)
T ss_pred             ccccCCCcccccccCCCcccccccccccHHHhccccccCCC----CCccC---CCCchhccchhhcCcceeecccCceEe
Confidence            46788999999999999999999999999999999997542    56665   899999999999999999999999999


Q ss_pred             eeCCCCC----Ccc---CCCCCCCcc--CcceEEEEecCC
Q 032184          113 CNFCGLD----GRC---LDADERPEL--CRGTVEFAASRE  143 (145)
Q Consensus       113 C~lC~~~----~~~---~~~~~rPEL--~~~tvE~~~p~~  143 (145)
                      |+||...    .+|   .+.+..+||  ++.||||++++.
T Consensus        78 CpfC~qrN~~p~~Y~~is~~n~P~el~Pq~stvEy~l~~~  117 (745)
T KOG1986|consen   78 CPFCNQRNPFPPHYSGISENNLPPELLPQYSTVEYTLSPG  117 (745)
T ss_pred             ccccccCCCCChhhcccCccCCChhhcCCcceeEEecCCC
Confidence            9999992    233   245667788  899999998853

>COG5047 SEC23 Vesicle coat complex COPII, subunit SEC23 [Intracellular trafficking and secretion]

Probab=99.76  E-value=4.3e-19  Score=154.76  Aligned_cols=103  Identities=24%  Similarity=0.394  Sum_probs=88.5

Q ss_pred             CCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCC-CCceEcCceEEEeCCceEE
Q 032184           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC-CRGYRNPFMEFVDNGKSFV  112 (145)
Q Consensus        34 n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~-C~aYiNp~~~~~~~g~~w~  112 (145)
                      +.+.++||+|||+||.++....++.+|++++|+||.+.+.    +++..   ++|+.|.. |+||+||||.++.+++.|+
T Consensus         6 iee~dgir~twnvfpat~~da~~~~iPia~lY~Pl~e~~~----~~v~~---yepv~C~~pC~avlnpyC~id~r~~~W~   78 (755)
T COG5047           6 IEENDGIRLTWNVFPATRGDATRTVIPIACLYTPLHEDDA----LTVNY---YEPVKCTAPCKAVLNPYCHIDERNQSWI   78 (755)
T ss_pred             hccccceEEEEecccCCccccccccccHHHhccccccccc----cCccc---CCCceecccchhhcCcceeeccCCceEe
Confidence            5788999999999999999999999999999999997532    45443   88999999 9999999999999999999


Q ss_pred             eeCCCCC----Ccc---CCCCCCCcc--CcceEEEEecCC
Q 032184          113 CNFCGLD----GRC---LDADERPEL--CRGTVEFAASRE  143 (145)
Q Consensus       113 C~lC~~~----~~~---~~~~~rPEL--~~~tvE~~~p~~  143 (145)
                      |.||+..    .++   .+.+..+||  ++.||||+.++.
T Consensus        79 CpfCnqrn~lp~qy~~iS~~~LplellpqssTiey~lskp  118 (755)
T COG5047          79 CPFCNQRNTLPPQYRDISNANLPLELLPQSSTIEYTLSKP  118 (755)
T ss_pred             cceecCCCCCChhhcCCCcccCCccccCCCceEEEEccCC
Confidence            9999992    223   234667799  899999998874

>PF04810 zf-Sec23_Sec24: Sec23/Sec24 zinc finger; InterPro: IPR006895 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.57  E-value=1e-15  Score=91.09  Aligned_cols=32  Identities=59%  Similarity=1.324  Sum_probs=23.7

Q ss_pred             CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      +|+||++|+||||||++|+.++++|+|+||++
T Consensus         1 ~p~rC~~C~aylNp~~~~~~~~~~w~C~~C~~   32 (40)
T PF04810_consen    1 GPVRCRRCRAYLNPFCQFDDGGKTWICNFCGT   32 (40)
T ss_dssp             -S-B-TTT--BS-TTSEEETTTTEEEETTT--
T ss_pred             CccccCCCCCEECCcceEcCCCCEEECcCCCC
Confidence            48999999999999999999999999999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. COPII (coat protein complex II)-coated vesicles carry proteins from the endoplasmic reticulum (ER) to the Golgi complex []. COPII-coated vesicles form on the ER by the stepwise recruitment of three cytosolic components: Sar1-GTP to initiate coat formation, Sec23/24 heterodimer to select SNARE and cargo molecules, and Sec13/31 to induce coat polymerisation and membrane deformation []. Sec23 p and Sec24p are structurally related, folding into five distinct domains: a beta-barrel, a zinc-finger, an alpha/beta trunk domain (IPR006896 from INTERPRO), an all-helical region (IPR006900 from INTERPRO), and a C-terminal gelsolin-like domain (IPR007123 from INTERPRO). This entry describes an approximately 55-residue Sec23/24 zinc-binding domain, which lies against the beta-barrel at the periphery of the complex. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0006886 intracellular protein transport, 0006888 ER to Golgi vesicle-mediated transport, 0030127 COPII vesicle coat; PDB: 3EFO_B 3EG9_B 3EGD_A 2YRC_A 2NUP_A 2YRD_A 3EGX_A 2NUT_A 3EH1_A 1PD0_A ....

>PF09082 DUF1922: Domain of unknown function (DUF1922); InterPro: IPR015166 Members of this family consist of a beta-sheet region followed by an alpha-helix and an unstructured C terminus

Probab=90.99  E-value=0.22  Score=32.77  Aligned_cols=26  Identities=31%  Similarity=0.772  Sum_probs=19.3

Q ss_pred             CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      -+.|| +|+.++  |.  .++.++-+| .||.
T Consensus         2 lifrC-~Cgr~l--ya--~e~~kTkkC-~CG~   27 (68)
T PF09082_consen    2 LIFRC-DCGRYL--YA--KEGAKTKKC-VCGK   27 (68)
T ss_dssp             EEEEE-TTS--E--EE--ETT-SEEEE-TTTE
T ss_pred             EEEEe-cCCCEE--Ee--cCCcceeEe-cCCC
Confidence            37899 799998  66  578888999 9998

The beta-sheet region contains a CXCX...XCXC sequence with Cys residues located in two proximal loops and pointing towards each other. This precise function of this set of bacterial proteins is, as yet, unknown []. ; PDB: 1GH9_A.

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=89.56  E-value=0.35  Score=28.86  Aligned_cols=27  Identities=22%  Similarity=0.663  Sum_probs=19.7

Q ss_pred             eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      ..+|.+|++-+-    ++.....++|+.||.
T Consensus         3 ~y~C~~CG~~~~----~~~~~~~~~Cp~CG~   29 (46)
T PRK00398          3 EYKCARCGREVE----LDEYGTGVRCPYCGY   29 (46)
T ss_pred             EEECCCCCCEEE----ECCCCCceECCCCCC
Confidence            468999999652    233333699999998

>PF13719 zinc_ribbon_5: zinc-ribbon domain

Probab=86.06  E-value=0.58  Score=26.83  Aligned_cols=31  Identities=23%  Similarity=0.561  Sum_probs=17.8

Q ss_pred             eeeCCCCCceEc-CceEEEeCCceEEeeCCCC
Q 032184           88 LVRCCCCRGYRN-PFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        88 ~~RC~~C~aYiN-p~~~~~~~g~~w~C~lC~~  118 (145)
                      .++|.+|++-.+ |-.++...|++.+|.-|++
T Consensus         2 ~i~CP~C~~~f~v~~~~l~~~~~~vrC~~C~~   33 (37)
T PF13719_consen    2 IITCPNCQTRFRVPDDKLPAGGRKVRCPKCGH   33 (37)
T ss_pred             EEECCCCCceEEcCHHHcccCCcEEECCCCCc
Confidence            356777766554 3333445566667776664

>smart00661 RPOL9 RNA polymerase subunit 9

Probab=81.18  E-value=0.97  Score=27.13  Aligned_cols=27  Identities=26%  Similarity=0.535  Sum_probs=18.5

Q ss_pred             eCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           90 RCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        90 RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      -|..|+..+  +..-...+..|.|.-||.
T Consensus         2 FCp~Cg~~l--~~~~~~~~~~~vC~~Cg~   28 (52)
T smart00661        2 FCPKCGNML--IPKEGKEKRRFVCRKCGY   28 (52)
T ss_pred             CCCCCCCcc--ccccCCCCCEEECCcCCC
Confidence            488999977  333222234799999998

>TIGR01053 LSD1 zinc finger domain, LSD1 subclass

Probab=80.39  E-value=1.6  Score=24.30  Aligned_cols=26  Identities=27%  Similarity=0.594  Sum_probs=18.6

Q ss_pred             eeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           89 VRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        89 ~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      +.|..|++.+-    .-.+.++++|.+|+.
T Consensus         2 ~~C~~C~t~L~----yP~gA~~vrCs~C~~   27 (31)
T TIGR01053         2 VVCGGCRTLLM----YPRGASSVRCALCQT   27 (31)
T ss_pred             cCcCCCCcEee----cCCCCCeEECCCCCe
Confidence            46888888773    235677888888875

This model describes a putative zinc finger domain found in three closely spaced copies in Arabidopsis protein LSD1 and in two copies in other proteins from the same species. The motif resembles CxxCRxxLMYxxGASxVxCxxC

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	145
3eh2_A	766	Crystal Structure Of The Human Copii-Coat Protein S		2e-24
3efo_B	770	Crystal Structure Of The Mammalian Copii-Coat Prote		6e-22
1m2v_B	926	Crystal Structure Of The Yeast Sec2324 HETERODIMER		3e-13
1pcx_A	810	Crystal Structure Of The Copii Coat Subunit, Sec24,		7e-13
3egd_B	748	Crystal Structure Of The Mammalian Copii-Coat Prote		4e-12
2nup_B	753	Crystal Structure Of The Human Sec23a24A HETERODIME		5e-12
3eh1_A	751	Crystal Structure Of The Human Copii-Coat Protein S		6e-12

>pdb|3EH2|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24c Length = 766

Iteration: 1
 Score =  108 bits (269), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/136 (42%), Positives = 82/136 (60%), Gaps = 14/136 (10%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E    VVD
Sbjct: 29  VTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVD 88
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
            GESG +RC  C+ Y  PFM+F++ G+ F C FC             LD  G+ +DA +R
Sbjct: 89  HGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDR 148
Query: 129 PELCRGTVEFAASREF 144
           PEL  G+ EF A+ ++
Sbjct: 149 PELSLGSYEFLATVDY 164

>pdb|3EFO|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec2324 BOUND TO THE TRANSPORT SIGNAL SEQUENCE OF SYNTAXIN 5 Length = 770

Iteration: 1
 Score = 99.4 bits (246), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 51/136 (37%), Positives = 80/136 (58%), Gaps = 14/136 (10%)
Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
           VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++  A    +E P+ +V+
Sbjct: 33  VTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVN 92
Query: 83  FGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LD--GRCLDADER 128
            GESG VRC  C+ Y  PFM+F++ G+ + C FC             LD  GR LD  E+
Sbjct: 93  HGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEK 152
Query: 129 PELCRGTVEFAASREF 144
           PEL  G+ E+ A+ ++
Sbjct: 153 PELSLGSYEYVATLDY 168

>pdb|1M2V|B Chain B, Crystal Structure Of The Yeast Sec2324 HETERODIMER Length = 926

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 37/86 (43%), Positives = 50/86 (58%), Gaps = 4/86 (4%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGL-VRCC 92
           N SP YIR +LN +P   +LLK S +P  L+++         DP P+    E GL VRC 
Sbjct: 176 NASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPL---NEDGLIVRCR 232
Query: 93  CCRGYRNPFMEFVDNGKSFVCNFCGL 118
            CR Y NPF+ F++ G+ + CNFC L
Sbjct: 233 RCRSYMNPFVTFIEQGRRWRCNFCRL 258

>pdb|1PCX|A Chain A, Crystal Structure Of The Copii Coat Subunit, Sec24, Complexed With A Peptide From The Snare Protein Bet1 Length = 810

Iteration: 1
 Score = 69.3 bits (168), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/89 (41%), Positives = 51/89 (57%), Gaps = 4/89 (4%)
Query: 31  DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGL-V 89
           +  N SP YIR +LN +P   +LLK S +P  L+++         DP P+    E GL V
Sbjct: 57  ELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPL---NEDGLIV 113
Query: 90  RCCCCRGYRNPFMEFVDNGKSFVCNFCGL 118
           RC  CR Y NPF+ F++ G+ + CNFC L
Sbjct: 114 RCRRCRSYMNPFVTFIEQGRRWRCNFCRL 142

>pdb|3EGD|B Chain B, Crystal Structure Of The Mammalian Copii-Coat Protein Sec23a24A COMPLEXED WITH THE SNARE PROTEIN SEC22 AND BOUND To The Transport Signal Sequence Of Vesicular Stomatitis Virus Glycoprotein Length = 748

Iteration: 1
 Score = 66.6 bits (161), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 26/128 (20%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P   RC+L  IP T+ LL  + +P  L++       P +D + +     S +VRC  
Sbjct: 35  NCNPELFRCTLTSIPQTQALLNKAKLPLGLLLH------PFKDLVQLPVVTSSTIVRCRS 88
Query: 94  CRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADE----------------RPELCRGTVE 137
           CR Y NPF+ F+D  + + CN C    R  D  E                RPE+   T+E
Sbjct: 89  CRTYINPFVSFLDQ-RRWKCNLC---YRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIE 144
Query: 138 FAASREFM 145
           F A  E+M
Sbjct: 145 FMAPSEYM 152

>pdb|2NUP|B Chain B, Crystal Structure Of The Human Sec23a24A HETERODIMER, Complexed With The Snare Protein Sec22b Length = 753

Iteration: 1
 Score = 66.6 bits (161), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 42/128 (32%), Positives = 60/128 (46%), Gaps = 26/128 (20%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NC+P   RC+L  IP T+ LL  + +P  L++       P +D + +     S +VRC  
Sbjct: 40  NCNPELFRCTLTSIPQTQALLNKAKLPLGLLLH------PFKDLVQLPVVTSSTIVRCRS 93
Query: 94  CRGYRNPFMEFVDNGKSFVCNFCGLDGRCLDADE----------------RPELCRGTVE 137
           CR Y NPF+ F+D  + + CN C    R  D  E                RPE+   T+E
Sbjct: 94  CRTYINPFVSFLDQ-RRWKCNLC---YRVNDVPEEFLYNPLTRVYGEPHRRPEVQNATIE 149
Query: 138 FAASREFM 145
           F A  E+M
Sbjct: 150 FMAPSEYM 157

>pdb|3EH1|A Chain A, Crystal Structure Of The Human Copii-Coat Protein Sec24b Length = 751

Iteration: 1
 Score = 66.2 bits (160), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 42/125 (33%), Positives = 61/125 (48%), Gaps = 20/125 (16%)
Query: 34  NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC 93
           NCSP   RC+L  IP T+ LL  + +P  L++     P      +PV+    + +VRC  
Sbjct: 37  NCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLH----PFRDLTQLPVI--TSNTIVRCRS 90
Query: 94  CRGYRNPFMEFVDNGKSFVCNFC-------------GLDGRCLDADERPELCRGTVEFAA 140
           CR Y NPF+ F+D  + + CN C              L     +  +RPE+   TVEF A
Sbjct: 91  CRTYINPFVSFIDQ-RRWKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIA 149
Query: 141 SREFM 145
           S ++M
Sbjct: 150 SSDYM 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	145
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	3e-35
3efo_B	770	SEC24 related gene family, member D; copii, coat p	5e-35
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-29
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	1e-28
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	4e-25
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	4e-24
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	7e-23

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens} Length = 766

 Score =  127 bits (320), Expect = 3e-35
 Identities = 58/141 (41%), Positives = 82/141 (58%), Gaps = 14/141 (9%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
            PP VT+ ++VKD GN SPRYIRC+   IPCT ++ K + +P A +++ LA   P E   
Sbjct: 25  VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASP 84

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLD 124
            VVD GESG +RC  C+ Y  PFM+F++ G+ F C FC                 G+ +D
Sbjct: 85  YVVDHGESGPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVD 144

Query: 125 ADERPELCRGTVEFAASREFM 145
           A +RPEL  G+ EF A+ ++ 
Sbjct: 145 AYDRPELSLGSYEFLATVDYC 165

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B Length = 770

 Score =  126 bits (318), Expect = 5e-35
 Identities = 53/152 (34%), Positives = 84/152 (55%), Gaps = 16/152 (10%)

Query: 8   LYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQV 67
           +Y T     +  PP VT+  +++D GN SPR+IRC+    PCT ++ K + +P A +++ 
Sbjct: 20  VYATNTRGQI--PPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKP 77

Query: 68  LALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------- 118
            A    +E P+ +V+ GESG VRC  C+ Y  PFM+F++ G+ + C FC           
Sbjct: 78  FATIPSNESPLYLVNHGESGPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYF 137

Query: 119 -----DGRCLDADERPELCRGTVEFAASREFM 145
                 GR LD  E+PEL  G+ E+ A+ ++ 
Sbjct: 138 QHLDHIGRRLDHYEKPELSLGSYEYVATLDYC 169

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score =  111 bits (278), Expect = 2e-29
 Identities = 40/138 (28%), Positives = 63/138 (45%), Gaps = 14/138 (10%)

Query: 20  PPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIP 79
             P     +  +  N SP YIR +LN +P   +LLK S +P  L+++         DP P
Sbjct: 162 VIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPP 221

Query: 80  VVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LDGRCLDADE 127
           + + G   +VRC  CR Y NPF+ F++ G+ + CNFC                      +
Sbjct: 222 LNEDGL--IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYD 279

Query: 128 RPELCRGTVEFAASREFM 145
           R E+    +E+ A +E+ 
Sbjct: 280 RNEIKCAVMEYMAPKEYT 297

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A Length = 810

 Score =  108 bits (271), Expect = 1e-28
 Identities = 43/147 (29%), Positives = 68/147 (46%), Gaps = 17/147 (11%)

Query: 14  GKSVKPPP---PVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLAL 70
             ++ PPP   P     +  +  N SP YIR +LN +P   +LLK S +P  L+++    
Sbjct: 37  DLTLPPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQH 96

Query: 71  PDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------L 118
                DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC              
Sbjct: 97  LYDDIDPPPLNEDGL--IVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSD 154

Query: 119 DGRCLDADERPELCRGTVEFAASREFM 145
                   +R E+    +E+ A +E+ 
Sbjct: 155 PNDPKSRYDRNEIKCAVMEYMAPKEYT 181

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A Length = 769

 Score = 98.9 bits (245), Expect = 4e-25
 Identities = 25/132 (18%), Positives = 41/132 (31%), Gaps = 18/132 (13%)

Query: 23  VTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVD 82
             + Y+     N     +R S N  P +        +P A +   L          P + 
Sbjct: 4   GMTTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLK-------ERPDLP 56

Query: 83  FGESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGL-------DGRCLDADERPELCR 133
             +   V C    CR   NP  +     K + CNFC              + ++  EL  
Sbjct: 57  PIQYEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLP 116

Query: 134 --GTVEFAASRE 143
              ++E+   R 
Sbjct: 117 QFSSIEYVVLRG 128

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B Length = 751

 Score = 95.8 bits (237), Expect = 4e-24
 Identities = 44/140 (31%), Positives = 63/140 (45%), Gaps = 20/140 (14%)

Query: 19  PPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPI 78
              PV +        NCSP   RC+L  IP T+ LL  + +P  L++     P      +
Sbjct: 22  VWAPVPNLNADLKKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLH----PFRDLTQL 77

Query: 79  PVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFC-------------GLDGRCLDA 125
           PV+      +VRC  CR Y NPF+ F+D  + + CN C              L     + 
Sbjct: 78  PVITSNT--IVRCRSCRTYINPFVSFID-QRRWKCNLCYRVNDVPEEFMYNPLTRSYGEP 134

Query: 126 DERPELCRGTVEFAASREFM 145
            +RPE+   TVEF AS ++M
Sbjct: 135 HKRPEVQNSTVEFIASSDYM 154

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A* Length = 768

 Score = 92.4 bits (228), Expect = 7e-23
 Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 12/121 (9%)

Query: 32  TGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRC 91
             N     +R + N  P T +    + +P   +   L       D + V  +    +   
Sbjct: 4   ETNEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLK----EYDELNVAPYNP-VVCSG 58

Query: 92  CCCRGYRNPFMEFVDNGKSFVCNFCGLD-------GRCLDADERPELCRGTVEFAASREF 144
             C+   NP+        S+ C  C                +   EL   T+E+  ++  
Sbjct: 59  PHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPV 118

Query: 145 M 145
            
Sbjct: 119 T 119

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	145
3eh2_A	766	Protein transport protein SEC24C; copii-coat prote	100.0
3efo_B	770	SEC24 related gene family, member D; copii, coat p	100.0
1pcx_A	810	Protein transport protein SEC24; 2.50A {Saccharomy	100.0
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	100.0
3eh1_A	751	Protein transport protein SEC24B; copii coat prote	100.0
2nut_A	769	Protein transport protein SEC23A; human copii SEC2	99.96
1m2o_A	768	SEC23, protein transport protein SEC23, SEC23P; zi	99.95
2yrc_A	59	Protein transport protein SEC23A; zinc binding, co	99.47
1gh9_A	71	8.3 kDa protein (gene MTH1184); beta+alpha complex	84.92
1pft_A	50	TFIIB, PFTFIIBN; N-terminal domain, transcription	81.21
2a20_A	62	Regulating synaptic membrane exocytosis protein 2;	80.84

>3eh2_A Protein transport protein SEC24C; copii-coat protein, vesicle transport, cytoplasm, endoplasmic reticulum, ER-golgi transport, golgi apparatus; 2.35A {Homo sapiens}

Probab=100.00  E-value=3.5e-42  Score=310.21  Aligned_cols=137  Identities=43%  Similarity=0.814  Sum_probs=126.6

Q ss_pred             eEEeccCCCCCCCCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCC
Q 032184            7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES   86 (145)
Q Consensus         7 ~~~~t~~~~~~~~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~   86 (145)
                      -.|.|...+.  .||+++++|++.|+|||+|+|||+||++||.+++++++++||||++||||++..+.+.++|+|++++.
T Consensus        15 ~~f~t~~~~~--~pP~~~t~~~~~d~gn~~p~~~R~T~~~iP~t~~l~~~~~lPlg~~i~P~~~~~~~e~~~pvv~~~~~   92 (766)
T 3eh2_A           15 EPFVTGVRGQ--VPPLVTTNFLVKDQGNASPRYIRCTSYNIPCTSDMAKQAQVPLAAVIKPLARLPPEEASPYVVDHGES   92 (766)
T ss_dssp             SEEETTSTTC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHTCCEEEEECTTCCCCTTSCCCEEECCGGG
T ss_pred             CCcccCCCCC--CCCCCCCceEeeccCCCCCceEEcccccCCCCHHHHHhCCCCeEEEEecCCcCcccCCCCCeecCCCC
Confidence            3688886544  69999999999999999999999999999999999999999999999999998777778999998889


Q ss_pred             CeeeCCCCCceEcCceEEEeCCceEEeeCCCC--------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus        87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~--------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      +|+||++|||||||||+|+++|++|+||||+.              +|.|.|.++||||++|+|||++|+|||
T Consensus        93 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~~vef~a~~eY~  165 (766)
T 3eh2_A           93 GPLRCNRCKAYMCPFMQFIEGGRRFQCCFCSCINDVPPQYFQHLDHTGKRVDAYDRPELSLGSYEFLATVDYC  165 (766)
T ss_dssp             CCCBCTTTCCBCCTTCEEEGGGTEEECTTTCCEEECCTTTTGGGGGSSSCCCCSCCHHHHCSEEEEECCGGGS
T ss_pred             CCCccCCCCCEeCCceEEecCCCEEEeccccccCCCCHHHhccccccccccccccCcccccCceeeecCHhhc
Confidence            99999999999999999999999999999999              244678899999999999999999996

>3efo_B SEC24 related gene family, member D; copii, coat protein, transport signal, disease mutation, endoplasmic reticulum, ER-golgi transport, golgi apparatus, membrane; 2.70A {Homo sapiens} PDB: 3eg9_B

Probab=100.00  E-value=2.9e-42  Score=310.86  Aligned_cols=137  Identities=39%  Similarity=0.801  Sum_probs=125.6

Q ss_pred             eEEeccCCCCCCCCCCccceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCC
Q 032184            7 ILYETRQGKSVKPPPPVTSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGES   86 (145)
Q Consensus         7 ~~~~t~~~~~~~~pp~~~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~   86 (145)
                      ..|.|...+.  .||+++++|++.|+|||+|+|||+||++||.+++++++++||||++||||++..+++.++|+|++++.
T Consensus        19 ~~~~t~~~~~--~pp~~~~~~~~~d~gn~~p~~~R~T~n~iP~t~~l~~~~~lPlg~~i~Pl~~~~~~e~p~pvv~~~~~   96 (770)
T 3efo_B           19 QVYATNTRGQ--IPPLVTTDCMIQDQGNASPRFIRCTTYCFPCTSDMAKQAQIPLAAVIKPFATIPSNESPLYLVNHGES   96 (770)
T ss_dssp             SEEETTSSSC--CCCCTTSCCEEECSSSCCTTTEEESBSEEESSHHHHHHHCCCCEEEECTTCCCCTTSCCCCEECCTTT
T ss_pred             CCccCCCCCC--CCCCCCCceeeeecCCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEEcCCCCCcccCCCCcccCCCC
Confidence            4678875444  69999999999999999999999999999999999999999999999999998776667899999889


Q ss_pred             CeeeCCCCCceEcCceEEEeCCceEEeeCCCC--------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL--------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus        87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~--------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      +|+||++|||||||||+|+++|++|+||||+.              +|.|.|.++||||++|+|||++|+|||
T Consensus        97 ~pvRC~rCrayiNPf~~f~~~g~~w~Cn~C~~~N~~P~~Y~~~l~~~g~r~d~~~rpEL~~~tvEf~ap~eY~  169 (770)
T 3efo_B           97 GPVRCNRCKAYMCPFMQFIEGGRRYQCGFCNCVNDVPPFYFQHLDHIGRRLDHYEKPELSLGSYEYVATLDYC  169 (770)
T ss_dssp             CSCBCTTTCCBSCTTCEEEGGGTEEECTTTCCEEECCGGGCCCCCSSSCTTTGGGSHHHHCSEEEEECCGGGS
T ss_pred             CCCccCCCCCCcCCceEEecCCCEEEeccccccCCCchHhhccccccccccccccCcccccCceeeecCHHHh
Confidence            99999999999999999999999999999998              244567889999999999999999997

>1pcx_A Protein transport protein SEC24; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1pd0_A 1pd1_A

Probab=100.00  E-value=6e-37  Score=277.50  Aligned_cols=120  Identities=33%  Similarity=0.622  Sum_probs=108.8

Q ss_pred             cceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceE
Q 032184           24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME  103 (145)
Q Consensus        24 ~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~  103 (145)
                      ++.|+..|+|||+|+|||+||++||.+++++++++||||++|+||++..++++++|+++.  .+|+||++|+|||||||+
T Consensus        50 ~~~~~~~d~~n~~p~~vR~T~n~iP~t~~~~~~~~lPlg~vv~P~~~~~~~~~~~pvv~~--~~pvRC~~CrayiNPf~~  127 (810)
T 1pcx_A           50 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT  127 (810)
T ss_dssp             GGSSSCSGGGSCCTTTEEESBSSEESSHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCTTTCCBCCTTCE
T ss_pred             CCccccccCCCCCCCceeeecccCCCCHHHHHhCCCCeEEEEecCCccccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence            489999999999999999999999999999999999999999999987666667899873  459999999999999999


Q ss_pred             EEeCCceEEeeCCCC------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184          104 FVDNGKSFVCNFCGL------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus       104 ~~~~g~~w~C~lC~~------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      |+.+|++|+||||+.            ++.+.|.++||||+++||||++|++||
T Consensus       128 ~~~~g~~W~C~~C~~~N~~P~~y~~~~~~~~~d~~~RpEL~~~tvEy~~p~~y~  181 (810)
T 1pcx_A          128 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYT  181 (810)
T ss_dssp             EETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGGGC
T ss_pred             EeCCCCEEEccCCCCcCCCchhhccccccCccccccCccccCceEEEEcCchhc
Confidence            999999999999998            234567889999999999999999996

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1

Probab=100.00  E-value=1.3e-36  Score=278.21  Aligned_cols=120  Identities=33%  Similarity=0.622  Sum_probs=109.8

Q ss_pred             cceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceE
Q 032184           24 TSKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFME  103 (145)
Q Consensus        24 ~~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~  103 (145)
                      ++.|+..|+|||+++|||+||++||.+++++++++||||++|+||++..++++++|+++.  .+|+||++|+|||||||+
T Consensus       166 ~~~~~~~d~gn~~p~~vR~T~n~iP~t~~l~~~~~lPlg~vv~P~a~~~~~~~~vpvv~~--~~pvRC~rCrAYiNPf~~  243 (926)
T 1m2v_B          166 ERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDDIDPPPLNED--GLIVRCRRCRSYMNPFVT  243 (926)
T ss_dssp             GGSSSCSSSSSCCTTTEEESBSSEESBHHHHHHHTCCCEEEECSCCSSSTTSSCCCEECS--CCCCBCSSSCCBCCTTCE
T ss_pred             CcccccccCCCCCCCceecccccCCCCHHHHHhCCCCeEEEEecCCCcccCCCCCCccCC--CCCCccCCccCEecCceE
Confidence            489999999999999999999999999999999999999999999987666667899873  459999999999999999


Q ss_pred             EEeCCceEEeeCCCC------------CCccCCCCCCCccCcceEEEEecCCCC
Q 032184          104 FVDNGKSFVCNFCGL------------DGRCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus       104 ~~~~g~~w~C~lC~~------------~~~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      |+.+|++|+||||+.            ++.|.|.++||||+++||||++|++||
T Consensus       244 ~~~~g~~W~CnfC~~~N~~P~~Y~~~~~~~~~d~~~RpEL~~~tvEyi~p~ey~  297 (926)
T 1m2v_B          244 FIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKEYT  297 (926)
T ss_dssp             EETTTTEEECTTTCCEEECCGGGTTTSTTCGGGGGGSHHHHCSEEEEECCGGGC
T ss_pred             EeCCCCEEEccCCCCCCCCchhhccccccCccccccCccccCceEEEEcChhhc
Confidence            999999999999998            244567889999999999999999996

>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle transport, transport signal sequence, cytoplasm, endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B 2nup_B 3egd_B 3egx_B

Probab=100.00  E-value=1.4e-34  Score=260.32  Aligned_cols=108  Identities=36%  Similarity=0.735  Sum_probs=95.6

Q ss_pred             ccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCCCCceEcCceEEEeCCce
Q 032184           31 DTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKS  110 (145)
Q Consensus        31 d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~C~aYiNp~~~~~~~g~~  110 (145)
                      ++|||+|+|||+|||+||.+++++++++||||++||||++..    ++|+++  ..+|+||++|||||||||+|. ++++
T Consensus        34 ~~~n~~p~~~R~T~n~iP~t~~~~~~~~lPlg~~i~Pl~~~~----~~P~v~--~~~p~RC~rCrayiNPf~~f~-~~~~  106 (751)
T 3eh1_A           34 KKLNCSPDSFRCTLTNIPQTQALLNKAKLPLGLLLHPFRDLT----QLPVIT--SNTIVRCRSCRTYINPFVSFI-DQRR  106 (751)
T ss_dssp             HHHSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECTTCCCS----CCCEEC--CSCCCBCTTTCCBCCTTCEES-SSSE
T ss_pred             cccCCCCCeEEeecccCCCCHHHHHhCCCCeEEEEecCCcCC----CCCccC--CCCCCcccCccCEeCCceEEe-cCCE
Confidence            489999999999999999999999999999999999999763    388887  357999999999999999994 5789


Q ss_pred             EEeeCCCC----CC---------ccCCCCCCCccCcceEEEEecCCCC
Q 032184          111 FVCNFCGL----DG---------RCLDADERPELCRGTVEFAASREFM  145 (145)
Q Consensus       111 w~C~lC~~----~~---------~~~~~~~rPEL~~~tvE~~~p~~Y~  145 (145)
                      |+||||+.    ..         .+.|.++||||++|||||++|++||
T Consensus       107 w~Cn~C~~~N~~P~~y~~~~~~~~~~d~~~rpEL~~~tvEy~~p~~y~  154 (751)
T 3eh1_A          107 WKCNLCYRVNDVPEEFMYNPLTRSYGEPHKRPEVQNSTVEFIASSDYM  154 (751)
T ss_dssp             EECTTTCCEEECCGGGC---------CGGGSHHHHCSEEEEEECGGGC
T ss_pred             EEcccccCCCCCCHHHhcccccccccCcccCchhccceEEEEcChhhh
Confidence            99999998    11         1347789999999999999999996

>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A

Probab=99.96  E-value=2.3e-31  Score=239.94  Aligned_cols=113  Identities=22%  Similarity=0.304  Sum_probs=99.7

Q ss_pred             ceeEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCC--CCceEcCce
Q 032184           25 SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFM  102 (145)
Q Consensus        25 ~~~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~--C~aYiNp~~  102 (145)
                      ++|...|++|++|+|||+||++||.+++++++++||||++|+||++..    ++|+++   .+|+||++  |+|||||||
T Consensus         6 ~~~~~~~~~n~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~   78 (769)
T 2nut_A            6 TTYLEFIQQNEERDGVRFSWNVWPSSRLEATRMVVPVAALFTPLKERP----DLPPIQ---YEPVLCSRTTCRAVLNPLC   78 (769)
T ss_dssp             -CHHHHHHHHHHHHSEEESBSSBCSSHHHHTTCSSCCEEEECTTCCCS----CCCCBC---SCCCBCSSTTCCCBCCTTS
T ss_pred             cchhhhhcccCCCCcccceeccCCCChHHHhcccCCeEEEEeeCCCCC----CCCcCC---CCCCcCCCCCCCeEECCce
Confidence            567777889999999999999999999999999999999999999652    488888   57999999  999999999


Q ss_pred             EEEeCCceEEeeCCCC----CCccC---CCCCCCcc--CcceEEEEecCCC
Q 032184          103 EFVDNGKSFVCNFCGL----DGRCL---DADERPEL--CRGTVEFAASREF  144 (145)
Q Consensus       103 ~~~~~g~~w~C~lC~~----~~~~~---~~~~rPEL--~~~tvE~~~p~~Y  144 (145)
                      +|+.+|++|+||||+.    ...+.   ..+.||||  +++||||++|++|
T Consensus        79 ~~~~~~~~W~C~~C~~~N~~P~~Y~~~~~~~~~pEL~p~~~tvEy~~~~~~  129 (769)
T 2nut_A           79 QVDYRAKLWACNFCYQRNQFPPSYAGISELNQPAELLPQFSSIEYVVLRGP  129 (769)
T ss_dssp             EEETTTTEEECSSSCCEEECCGGGTTCBTTBCCGGGSGGGSSEEEEECSSC
T ss_pred             EEeCCCCEEEccCCCCCCCCChHHccCCcccCChhhcCCCCcEEEEccCCC
Confidence            9999999999999999    22222   34678999  8999999999987

>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*

Probab=99.95  E-value=2.8e-29  Score=226.29  Aligned_cols=103  Identities=20%  Similarity=0.327  Sum_probs=91.0

Q ss_pred             CCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCCCCceeccCCCCeeeCCC--CCceEcCceEEEeCCceE
Q 032184           34 NCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSEDPIPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSF  111 (145)
Q Consensus        34 n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~~vp~v~~~~~~~~RC~~--C~aYiNp~~~~~~~g~~w  111 (145)
                      |++++|||+||++||.+++++++++||||++||||++..    ++|+++   .+|+||++  |+|||||||+|+.+|++|
T Consensus         6 ~~~~~~vR~T~n~~P~t~~~~~~~~lPlg~vi~P~~~~~----~~p~v~---~~pvRC~~~~CrayiNPf~~~~~~~~~W   78 (768)
T 1m2o_A            6 NEDINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYD----ELNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSW   78 (768)
T ss_dssp             HHHHHSEEESBSEEESSHHHHHHTCSCSEEEECTTCCCT----TCCEEC---SCCCBCCSTTTCCBCCTTSCEETTTTEE
T ss_pred             ccCcCceEeeeccCCCCHHHHhcCCCCeEEEEEeCCCCC----CCCcCC---CCCCccCCCCCCeEECCceEEeCCCCEE
Confidence            789999999999999999999999999999999999642    488987   57999999  999999999999999999


Q ss_pred             EeeCCCCCC----ccC---CCCCCCccCcceEEEEecCC
Q 032184          112 VCNFCGLDG----RCL---DADERPELCRGTVEFAASRE  143 (145)
Q Consensus       112 ~C~lC~~~~----~~~---~~~~rPEL~~~tvE~~~p~~  143 (145)
                      +||||+..+    .+.   ..+.||||+++||||++|++
T Consensus        79 ~C~~C~~~N~~P~~y~~~~~~~~~pEL~~~tvEy~~p~~  117 (768)
T 1m2o_A           79 SCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKP  117 (768)
T ss_dssp             CCTTTCCCCBCCGGGCC---CCCCGGGTCSEEEEECSCC
T ss_pred             EcccCCCCCCCChHHccCCcccCChhhccCCEEEECCCC
Confidence            999999922    221   34678999999999999863

>2yrc_A Protein transport protein SEC23A; zinc binding, copii, coat protein complex-II, endoplasmic reticulum, golgi, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yrd_A

Probab=99.47  E-value=1.4e-14  Score=92.06  Aligned_cols=34  Identities=32%  Similarity=0.627  Sum_probs=32.4

Q ss_pred             CCCeeeCCC--CCceEcCceEEEeCCceEEeeCCCC
Q 032184           85 ESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        85 ~~~~~RC~~--C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      +++|+||++  |+||||||++|+.++++|+|+||+.
T Consensus         6 ~~~pvRC~r~~CraylNP~~~~~~~~~~W~C~~C~~   41 (59)
T 2yrc_A            6 SGEPVLCSRTTCRAVLNPLCQVDYRAKLWACNFCYQ   41 (59)
T ss_dssp             CCCCCBCSCTTTCCBCCTTSEEEGGGTEEECSSSCC
T ss_pred             CCCCcccCCCCCCeEECCceEEECCCCEEEcccCCC
Confidence            378999999  9999999999999999999999998

>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1

Probab=84.92  E-value=0.51  Score=30.30  Aligned_cols=27  Identities=26%  Similarity=0.555  Sum_probs=20.5

Q ss_pred             CCeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           86 SGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        86 ~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      +-++||. |++++  +.  +.+.++-+|. ||.
T Consensus         2 Y~vv~C~-C~~~~--~~--~~~~kT~~C~-CG~   28 (71)
T 1gh9_A            2 YIIFRCD-CGRAL--YS--REGAKTRKCV-CGR   28 (71)
T ss_dssp             EEEEEET-TSCCE--EE--ETTCSEEEET-TTE
T ss_pred             eEEEECC-CCCEE--EE--cCCCcEEECC-CCC
Confidence            3479999 99985  33  5566667898 998

>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1

Probab=81.21  E-value=3.5  Score=23.85  Aligned_cols=29  Identities=21%  Similarity=0.457  Sum_probs=22.2

Q ss_pred             CeeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           87 GLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        87 ~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      ....|..|++-   -..++.....++|..||.
T Consensus         4 ~~~~CP~C~~~---~l~~d~~~gelvC~~CG~   32 (50)
T 1pft_A            4 KQKVCPACESA---ELIYDPERGEIVCAKCGY   32 (50)
T ss_dssp             SCCSCTTTSCC---CEEEETTTTEEEESSSCC
T ss_pred             ccEeCcCCCCc---ceEEcCCCCeEECcccCC
Confidence            35689999881   234677777899999999

>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C

Probab=80.84  E-value=0.29  Score=30.50  Aligned_cols=26  Identities=31%  Similarity=0.621  Sum_probs=18.7

Q ss_pred             eeeCCCCCceEcCceEEEeCCceEEeeCCC
Q 032184           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCG  117 (145)
Q Consensus        88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~  117 (145)
                      .--|.+|++++.-    -...-+|.|++|.
T Consensus        33 ~r~CaRCGg~v~l----r~~k~~WvC~lC~   58 (62)
T 2a20_A           33 TKFCARCGGRVSL----RSNKVMWVCNLCR   58 (62)
T ss_dssp             CEECTTSEEEEES----STTCEEEEEHHHH
T ss_pred             CeeecccCCEeee----cCCeEEEEehhhh
Confidence            5567888888753    3355689999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	145
d1pd0a5	85	g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccha	1e-19
d1pd0a2	177	b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast	1e-14
d2qtva5	75	g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Sacchar	4e-12

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 75.6 bits (186), Expect = 1e-19
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 14/83 (16%)

Query: 75  EDPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCG------------LDGRC 122
            DP P+ + G   +VRC  CR Y NPF+ F++ G+ + CNFC                  
Sbjct: 2   IDPPPLNEDG--LIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDP 59

Query: 123 LDADERPELCRGTVEFAASREFM 145
               +R E+    +E+ A +E+ 
Sbjct: 60  KSRYDRNEIKCAVMEYMAPKEYT 82

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 177

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.2 bits (159), Expect = 1e-14
 Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 19 PPPPVT----SKYIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPS 74
          PPPP+        +  +  N SP YIR +LN +P   +LLK S +P  L+++        
Sbjct: 25 PPPPLVIPPERMLVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDC 84

Query: 75 EDPIPVV 81
           + +   
Sbjct: 85 METVMRA 91

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 75

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.0 bits (135), Expect = 4e-12
 Identities = 12/64 (18%), Positives = 20/64 (31%), Gaps = 9/64 (14%)

Query: 89  VRCCC--CRGYRNPFMEFVDNGKSFVCNFCGLDGRC-------LDADERPELCRGTVEFA 139
           V C    C+   NP+        S+ C  C                +   EL   T+E+ 
Sbjct: 10  VVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYI 69

Query: 140 ASRE 143
            ++ 
Sbjct: 70  TNKP 73

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	145
d1pd0a5	85	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.94
d2qtva5	75	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	99.87
d1pd0a2	177	Sec24 {Baker's yeast (Saccharomyces cerevisiae) [T	99.43
d2qtva2	176	Sec23 {Baker's yeast (Saccharomyces cerevisiae) [T	98.39
d1y0ja1	39	Erythroid transcription factor GATA-1 {Mouse (Mus	82.54
d1s24a_	56	Two-iron rubredoxin {Pseudomonas oleovorans [TaxId	80.18

>d1pd0a5 g.41.10.1 (A:216-300) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=5e-28  Score=163.40  Aligned_cols=68  Identities=35%  Similarity=0.798  Sum_probs=59.5

Q ss_pred             CCCceeccCCCCeeeCCCCCceEcCceEEEeCCceEEeeCCCC------------CCccCCCCCCCccCcceEEEEecCC
Q 032184           76 DPIPVVDFGESGLVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL------------DGRCLDADERPELCRGTVEFAASRE  143 (145)
Q Consensus        76 ~~vp~v~~~~~~~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~------------~~~~~~~~~rPEL~~~tvE~~~p~~  143 (145)
                      ++||+++  ...|+||++|+||||||++|+.+|++|+|+||++            .+.+.+.++||||++|||||+||++
T Consensus         3 ~pvPv~~--~~~i~RC~~C~ayiNP~~~~~~~g~~w~C~~C~~~N~~p~~y~~~~~~~~~~~~~rPEL~~~tvEy~ap~~   80 (85)
T d1pd0a5           3 DPPPLNE--DGLIVRCRRCRSYMNPFVTFIEQGRRWRCNFCRLANDVPMQMDQSDPNDPKSRYDRNEIKCAVMEYMAPKE   80 (85)
T ss_dssp             SCCCBCC--SCCCCBCSSSCCBCCTTCEEETTTTEEECTTTCCEEECCGGGGC-----CCCGGGSHHHHCSEEEEECCGG
T ss_pred             CCCcccC--CCCCccccCCcCEECCceEEeCCCCEEECCCCCcccCCCHHHhccccCCccccccCcccccceEEEECChh
Confidence            4689887  4579999999999999999999999999999998            1234567889999999999999999


Q ss_pred             CC
Q 032184          144 FM  145 (145)
Q Consensus       144 Y~  145 (145)
                      ||
T Consensus        81 Y~   82 (85)
T d1pd0a5          81 YT   82 (85)
T ss_dssp             GC
T ss_pred             hh
Confidence            97

>d2qtva5 g.41.10.1 (A:45-119) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Zn-finger domain of Sec23/24
family: Zn-finger domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=2.3e-23  Score=137.26  Aligned_cols=64  Identities=20%  Similarity=0.404  Sum_probs=55.1

Q ss_pred             CceeccCCCCeeeCCC--CCceEcCceEEEeCCceEEeeCCCC----CCcc---CCCCCCCccCcceEEEEecCCC
Q 032184           78 IPVVDFGESGLVRCCC--CRGYRNPFMEFVDNGKSFVCNFCGL----DGRC---LDADERPELCRGTVEFAASREF  144 (145)
Q Consensus        78 vp~v~~~~~~~~RC~~--C~aYiNp~~~~~~~g~~w~C~lC~~----~~~~---~~~~~rPEL~~~tvE~~~p~~Y  144 (145)
                      ++++.   ++|+||++  |+||||||++|+.+|++|+|+||+.    ...+   .+.+.+|||++|||||++|+++
T Consensus         2 ~~~~~---~~PvrC~r~~C~ayiNP~~~~~~~~~~W~C~~C~~~N~lP~~Y~~~~~~~~ppEL~~~tVEyi~p~~~   74 (75)
T d2qtva5           2 LNVAP---YNPVVCSGPHCKSILNPYCVIDPRNSSWSCPICNSRNHLPPQYTNLSQENMPLELQSTTIEYITNKPV   74 (75)
T ss_dssp             CCEES---SCCCBCCSTTTCCBCCTTCCEETTTTEEECTTTCCEEECCTTTSSCCTTSCCHHHHCSEEEEEEEEEC
T ss_pred             CCccC---CCCceeCCCCCCcEECCceEEecCCCEEEecccCccCcCChhhccCCccCcCccccCccEEEecCCCC
Confidence            56666   88999986  9999999999999999999999999    2222   3567899999999999999876

>d1pd0a2 b.2.8.1 (A:133-215,A:553-646) Sec24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec24
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.43  E-value=2.1e-14  Score=107.55  Aligned_cols=48  Identities=31%  Similarity=0.503  Sum_probs=44.4

Q ss_pred             eEecccCCCCCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCC
Q 032184           27 YIVKDTGNCSPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPS   74 (145)
Q Consensus        27 ~~~~d~~n~~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~   74 (145)
                      ++..|+|||+|+|||+|+|+||.+.+++++++||||++|+||+.+...
T Consensus        37 ~~~~d~~n~~p~~~r~T~~~iP~~~~ll~~~~lP~~~~i~Pf~~l~~a   84 (177)
T d1pd0a2          37 LVPSELSNASPDYIRSTLNAVPKNSSLLKKSKLPFGLVIRPYQHLYDC   84 (177)
T ss_dssp             SSCSGGGSCCTTTEEESBSSEESSHHHHHHHCCCCEEEECSCCSSSTE
T ss_pred             ecccccCCCCccceeeeeccCCCCHHHHHHcCCCcEEEeccccchhhh
Confidence            556799999999999999999999999999999999999999987543

>d2qtva2 b.2.8.1 (A:2-44,A:391-523) Sec23 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: Common fold of diphtheria toxin/transcription factors/cytochrome f
superfamily: beta-sandwich domain of Sec23/24
family: beta-sandwich domain of Sec23/24
domain: Sec23
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=8.2e-08  Score=70.90  Aligned_cols=41  Identities=20%  Similarity=0.188  Sum_probs=36.6

Q ss_pred             CCCeeEeecccccCCHHHHhhcCCceEEEEeecCCCCCCCC
Q 032184           36 SPRYIRCSLNQIPCTENLLKLSSMPSALMVQVLALPDPSED   76 (145)
Q Consensus        36 ~p~~iR~T~~~iP~~~~~~~~~~lPlg~~i~Pf~~~~~~~~   76 (145)
                      +.+.||+|||+||.++..+.++.||+|++|+||++..+.+.
T Consensus         7 ~~dgvR~swn~~p~s~~e~~~~vvP~~~~ytplker~d~~G   47 (176)
T d2qtva2           7 DINGVRFTWNVFPSTRSDANSNVVPVGCLYTPLKEYDDEEG   47 (176)
T ss_dssp             HHHSEEESBSEEESSHHHHHHTCSCEEEEECTTCCCTCTTS
T ss_pred             cccCcEEEeeccCCChHHhhceeeeeeEEeccCccccCCCC
Confidence            34689999999999999999999999999999999866543

>d1y0ja1 g.39.1.1 (A:200-238) Erythroid transcription factor GATA-1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: Glucocorticoid receptor-like (DNA-binding domain)
superfamily: Glucocorticoid receptor-like (DNA-binding domain)
family: Erythroid transcription factor GATA-1
domain: Erythroid transcription factor GATA-1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.54  E-value=0.15  Score=27.73  Aligned_cols=30  Identities=30%  Similarity=0.758  Sum_probs=25.7

Q ss_pred             eeeCCCCCceEcCceEEEeCCceEEeeCCCC
Q 032184           88 LVRCCCCRGYRNPFMEFVDNGKSFVCNFCGL  118 (145)
Q Consensus        88 ~~RC~~C~aYiNp~~~~~~~g~~w~C~lC~~  118 (145)
                      ..+|.+|++--.|.......|+ -.||.||.
T Consensus         2 ~r~C~~Cgtt~Tp~WR~gp~G~-~LCNACGl   31 (39)
T d1y0ja1           2 ARECVNCGATATPLWRRDRTGH-YLCNACGL   31 (39)
T ss_dssp             CCCCSSSCCCCCSCCEECTTSC-EECSSHHH
T ss_pred             cCCCCCCCCCCCcccccCCCCC-EeeHHhHH
Confidence            4589999999999999888886 58999985

>d1s24a_ g.41.5.1 (A:) Two-iron rubredoxin {Pseudomonas oleovorans [TaxId: 301]}

class: Small proteins
fold: Rubredoxin-like
superfamily: Rubredoxin-like
family: Rubredoxin
domain: Two-iron rubredoxin
species: Pseudomonas oleovorans [TaxId: 301]

Probab=80.18  E-value=0.12  Score=30.27  Aligned_cols=16  Identities=31%  Similarity=0.696  Sum_probs=9.3

Q ss_pred             EEEeCCceEEeeCCCC
Q 032184          103 EFVDNGKSFVCNFCGL  118 (145)
Q Consensus       103 ~~~~~g~~w~C~lC~~  118 (145)
                      .|+.--..|+|++|+.
T Consensus        30 ~F~~LP~dw~CP~C~a   45 (56)
T d1s24a_          30 RFEDIPDDWCCPDCGA   45 (56)
T ss_dssp             CGGGCCTTCCCSSSCC
T ss_pred             ChhhCCCCCCCcCCCC
Confidence            3333334577777776