Citrus Sinensis ID: 032233

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKYKS
cccEEEEcccccEEEEEEccccccccHHHHHHHHHccccccccccccccccccccccccccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccc
cccEEHHHcccccEEEEEcHHHcccHHHHHHHHHHHcEEcEEcccccccccccccccEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccHHHHHHHHHHHHHHHHHccccccccHcHccccc
mgyelvsggteNHLVLVNLKNKGIDGSRVEKVLEAVHIAAnkntvpgdvsamvpggirmgtpaltsrgfveedFAKVAYFFDAAVKLTVKIKsetqgtklKDFVATTQSANFQSEIAKRCHDVEEYakqfptigfeKETMKYKS
mgyelvsggtenHLVLVNLKNKGIDGSRVEKVLEAVHiaankntvpgdvsamVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKsetqgtklKDFVATTQSANFQSEIAKRCHDVEEYAkqfptigfeketmkyks
MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKYKS
*********TENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIG**********
MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKY**
********GTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKYKS
MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETM****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCHDVEEYAKQFPTIGFEKETMKYKS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query144 2.2.26 [Sep-21-2011]
P49358517 Serine hydroxymethyltrans N/A no 0.993 0.276 0.909 5e-71
P49357517 Serine hydroxymethyltrans N/A no 0.993 0.276 0.881 5e-69
P50433518 Serine hydroxymethyltrans N/A no 0.993 0.276 0.875 6e-68
Q9SZJ5517 Serine hydroxymethyltrans yes no 0.993 0.276 0.826 2e-64
P34899518 Serine hydroxymethyltrans N/A no 0.979 0.272 0.823 6e-64
Q3SZ20504 Serine hydroxymethyltrans yes no 0.923 0.263 0.536 1e-35
P34896483 Serine hydroxymethyltrans no no 0.930 0.277 0.496 6e-34
Q7S5N8527 Putative serine hydroxyme N/A no 0.909 0.248 0.492 7e-34
P34897504 Serine hydroxymethyltrans no no 0.930 0.265 0.510 1e-33
Q5RFK5483 Serine hydroxymethyltrans yes no 0.930 0.277 0.496 2e-33
>sp|P49358|GLYN_FLAPR Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function desciption
 Score =  265 bits (678), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 130/143 (90%), Positives = 133/143 (93%)

Query: 2   GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
           GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT
Sbjct: 375 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 434

Query: 62  PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCH 121
           PALTSRGFVEEDFAKVAY FD AVKL VKIK E QGTKLKDFVA  QS+ FQSEI+K  H
Sbjct: 435 PALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRH 494

Query: 122 DVEEYAKQFPTIGFEKETMKYKS 144
           DVEEYAKQFPTIGFEKETMKYK+
Sbjct: 495 DVEEYAKQFPTIGFEKETMKYKN 517
Interconversion of serine and glycine.
Flaveria pringlei (taxid: 4226)
EC: 2EC: .EC: 1EC: .EC: 2EC: .EC: 1
>sp|P49357|GLYM_FLAPR Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1 Back     alignment and function description
>sp|P50433|GLYM_SOLTU Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1 Back     alignment and function description
>sp|Q9SZJ5|GLYM_ARATH Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1 Back     alignment and function description
>sp|P34899|GLYM_PEA Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1 Back     alignment and function description
>sp|Q3SZ20|GLYM_BOVIN Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1 Back     alignment and function description
>sp|P34896|GLYC_HUMAN Serine hydroxymethyltransferase, cytosolic OS=Homo sapiens GN=SHMT1 PE=1 SV=1 Back     alignment and function description
>sp|Q7S5N8|GLYM_NEUCR Putative serine hydroxymethyltransferase, mitochondrial OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=NCU05805 PE=3 SV=1 Back     alignment and function description
>sp|P34897|GLYM_HUMAN Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3 Back     alignment and function description
>sp|Q5RFK5|GLYC_PONAB Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
1346156 517 RecName: Full=Serine hydroxymethyltransf 0.993 0.276 0.909 3e-69
134142077 520 mitochondrial serine hydroxymethyltransf 0.993 0.275 0.888 4e-68
224097398 518 precursor of transferase serine hydroxym 0.993 0.276 0.881 1e-67
134142067 520 mitochondrial serine hydroxymethyltransf 0.993 0.275 0.881 1e-67
118488863 520 unknown [Populus trichocarpa x Populus d 0.993 0.275 0.888 1e-67
1346155 517 RecName: Full=Serine hydroxymethyltransf 0.993 0.276 0.881 3e-67
224109940 520 precursor of transferase serine hydroxym 0.993 0.275 0.881 4e-67
118489111 520 unknown [Populus trichocarpa x Populus d 0.993 0.275 0.874 6e-67
255572828 513 serine hydroxymethyltransferase, putativ 0.986 0.276 0.873 1e-66
351722703 518 serine hydroxymethyltransferase 5 [Glyci 0.993 0.276 0.881 1e-66
>gi|1346156|sp|P49358.1|GLYN_FLAPR RecName: Full=Serine hydroxymethyltransferase 2, mitochondrial; Short=SHMT; AltName: Full=Glycine hydroxymethyltransferase; AltName: Full=Serine methylase; Flags: Precursor gi|437997|emb|CAA81079.1| glycine hydroxymethyltransferase [Flaveria pringlei] Back     alignment and taxonomy information
 Score =  265 bits (678), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 130/143 (90%), Positives = 133/143 (93%)

Query: 2   GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
           GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT
Sbjct: 375 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 434

Query: 62  PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRCH 121
           PALTSRGFVEEDFAKVAY FD AVKL VKIK E QGTKLKDFVA  QS+ FQSEI+K  H
Sbjct: 435 PALTSRGFVEEDFAKVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQSSAFQSEISKLRH 494

Query: 122 DVEEYAKQFPTIGFEKETMKYKS 144
           DVEEYAKQFPTIGFEKETMKYK+
Sbjct: 495 DVEEYAKQFPTIGFEKETMKYKN 517

Source: Flaveria pringlei

Species: Flaveria pringlei

Genus: Flaveria

Family: Asteraceae

Order: Asterales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|134142077|gb|ABO61382.1| mitochondrial serine hydroxymethyltransferase [Populus tremuloides] Back     alignment and taxonomy information
>gi|224097398|ref|XP_002310916.1| precursor of transferase serine hydroxymethyltransferase 2 [Populus trichocarpa] gi|222850736|gb|EEE88283.1| precursor of transferase serine hydroxymethyltransferase 2 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|134142067|gb|ABO61377.1| mitochondrial serine hydroxymethyltransferase [Populus tremuloides] Back     alignment and taxonomy information
>gi|118488863|gb|ABK96241.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|1346155|sp|P49357.1|GLYM_FLAPR RecName: Full=Serine hydroxymethyltransferase 1, mitochondrial; Short=SHMT; AltName: Full=Glycine hydroxymethyltransferase; AltName: Full=Serine methylase; Flags: Precursor gi|437995|emb|CAA81078.1| glycine hydroxymethyltransferase [Flaveria pringlei] Back     alignment and taxonomy information
>gi|224109940|ref|XP_002315363.1| precursor of transferase serine hydroxymethyltransferase 7 [Populus trichocarpa] gi|222864403|gb|EEF01534.1| precursor of transferase serine hydroxymethyltransferase 7 [Populus trichocarpa] Back     alignment and taxonomy information
>gi|118489111|gb|ABK96362.1| unknown [Populus trichocarpa x Populus deltoides] Back     alignment and taxonomy information
>gi|255572828|ref|XP_002527346.1| serine hydroxymethyltransferase, putative [Ricinus communis] gi|223533265|gb|EEF35018.1| serine hydroxymethyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|351722703|ref|NP_001237509.1| serine hydroxymethyltransferase 5 [Glycine max] gi|222142537|gb|ACM45955.1| serine hydroxymethyltransferase 5 [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query144
TAIR|locus:2005518517 SHM1 "serine transhydroxymethy 0.993 0.276 0.826 9.3e-59
TAIR|locus:2148463533 SHM2 "serine hydroxymethyltran 0.986 0.266 0.832 2.5e-58
UNIPROTKB|Q3SZ20504 SHMT2 "Serine hydroxymethyltra 0.923 0.263 0.536 2e-33
UNIPROTKB|F1SL74504 LOC100626911 "Serine hydroxyme 0.930 0.265 0.547 4.1e-33
UNIPROTKB|B4DLV4408 SHMT2 "Serine hydroxymethyltra 0.930 0.328 0.510 1.3e-31
UNIPROTKB|B4DPM9345 SHMT1 "Serine hydroxymethyltra 0.923 0.385 0.5 1.3e-31
UNIPROTKB|P34896483 SHMT1 "Serine hydroxymethyltra 0.923 0.275 0.5 1.3e-31
UNIPROTKB|P34897504 SHMT2 "Serine hydroxymethyltra 0.930 0.265 0.510 1.3e-31
UNIPROTKB|Q4KLG7352 Shmt1 "Serine hydroxymethyltra 0.930 0.380 0.507 2e-31
UNIPROTKB|Q60V73511 mel-32 "Serine hydroxymethyltr 0.916 0.258 0.514 4.6e-31
TAIR|locus:2005518 SHM1 "serine transhydroxymethyltransferase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 119/144 (82%), Positives = 132/144 (91%)

Query:     2 GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
             GYELVSGGT+NHLVLVNLK KGIDGSRVEKVLEAVHIA+NKNTVPGDVSAMVPGGIRMGT
Sbjct:   374 GYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGDVSAMVPGGIRMGT 433

Query:    62 PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRC 120
             PALTSRGFVEEDFAKVA +FD AV + +K+KSE QGTKLKDFV+  +S++  QSEIAK  
Sbjct:   434 PALTSRGFVEEDFAKVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLR 493

Query:   121 HDVEEYAKQFPTIGFEKETMKYKS 144
             H+VEE+AKQFPTIGFEKETMKYK+
Sbjct:   494 HEVEEFAKQFPTIGFEKETMKYKN 517
GO:0003824 "catalytic activity" evidence=IEA
GO:0004372 "glycine hydroxymethyltransferase activity" evidence=IEA;ISS;TAS
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006544 "glycine metabolic process" evidence=IEA;ISS
GO:0006563 "L-serine metabolic process" evidence=IEA;ISS
GO:0019464 "glycine decarboxylation via glycine cleavage system" evidence=IMP
GO:0030170 "pyridoxal phosphate binding" evidence=IEA
GO:0005759 "mitochondrial matrix" evidence=ISS
GO:0005634 "nucleus" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009626 "plant-type hypersensitive response" evidence=TAS
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0046686 "response to cadmium ion" evidence=IEP
GO:0009409 "response to cold" evidence=IEP;RCA
GO:0010319 "stromule" evidence=IDA
GO:0005886 "plasma membrane" evidence=IDA
GO:0009853 "photorespiration" evidence=IMP
GO:0016020 "membrane" evidence=IDA
GO:0008266 "poly(U) RNA binding" evidence=IDA
GO:0048046 "apoplast" evidence=IDA
GO:0005515 "protein binding" evidence=IPI
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009697 "salicylic acid biosynthetic process" evidence=RCA
GO:0009814 "defense response, incompatible interaction" evidence=RCA
GO:0019684 "photosynthesis, light reaction" evidence=RCA
GO:0042742 "defense response to bacterium" evidence=RCA
TAIR|locus:2148463 SHM2 "serine hydroxymethyltransferase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q3SZ20 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1SL74 LOC100626911 "Serine hydroxymethyltransferase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|B4DLV4 SHMT2 "Serine hydroxymethyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|B4DPM9 SHMT1 "Serine hydroxymethyltransferase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P34896 SHMT1 "Serine hydroxymethyltransferase, cytosolic" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|P34897 SHMT2 "Serine hydroxymethyltransferase, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q4KLG7 Shmt1 "Serine hydroxymethyltransferase" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|Q60V73 mel-32 "Serine hydroxymethyltransferase" [Caenorhabditis briggsae (taxid:6238)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9SZJ5GLYM_ARATH2, ., 1, ., 2, ., 10.82630.99300.2765yesno
P49358GLYN_FLAPR2, ., 1, ., 2, ., 10.90900.99300.2765N/Ano

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.1.2LOW CONFIDENCE prediction!
4th Layer2.1.2.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
PLN03226475 PLN03226, PLN03226, serine hydroxymethyltransferas 4e-83
PTZ00094452 PTZ00094, PTZ00094, serine hydroxymethyltransferas 5e-54
pfam00464380 pfam00464, SHMT, Serine hydroxymethyltransferase 6e-41
cd00378402 cd00378, SHMT, Serine-glycine hydroxymethyltransfe 2e-38
PRK00011416 PRK00011, glyA, serine hydroxymethyltransferase; R 2e-36
COG0112413 COG0112, GlyA, Glycine/serine hydroxymethyltransfe 4e-34
PLN02271586 PLN02271, PLN02271, serine hydroxymethyltransferas 1e-28
PRK13034416 PRK13034, PRK13034, serine hydroxymethyltransferas 3e-28
PRK13580493 PRK13580, PRK13580, serine hydroxymethyltransferas 7e-20
>gnl|CDD|215639 PLN03226, PLN03226, serine hydroxymethyltransferase; Provisional Back     alignment and domain information 
 Score =  251 bits (642), Expect = 4e-83
 Identities = 82/143 (57%), Positives = 104/143 (72%), Gaps = 1/143 (0%)

Query: 1   MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
            GY+LV+GGT+NHLVL +L+  G+ GSRVEKVL+  HI  NKN VPGD SA+VPGG+R+G
Sbjct: 333 KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIG 392

Query: 61  TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQGTKLKDFVATTQSANFQSEIAKRC 120
           TPA+TSRG VE+DF KVA F   AV + +KI+ E  G KLKDF    +S +F  +I    
Sbjct: 393 TPAMTSRGLVEKDFEKVAEFLHRAVTIALKIQKEH-GKKLKDFKKGLESNDFSKDIEALR 451

Query: 121 HDVEEYAKQFPTIGFEKETMKYK 143
            +VEE+A  FP  GF+KE+MKYK
Sbjct: 452 AEVEEFATSFPMPGFDKESMKYK 474

Length = 475
>gnl|CDD|240264 PTZ00094, PTZ00094, serine hydroxymethyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|189558 pfam00464, SHMT, Serine hydroxymethyltransferase Back     alignment and domain information
>gnl|CDD|99733 cd00378, SHMT, Serine-glycine hydroxymethyltransferase (SHMT) Back     alignment and domain information
>gnl|CDD|234571 PRK00011, glyA, serine hydroxymethyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|223190 COG0112, GlyA, Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase Back     alignment and domain information
>gnl|CDD|237280 PRK13034, PRK13034, serine hydroxymethyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|184161 PRK13580, PRK13580, serine hydroxymethyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 144
KOG2467477 consensus Glycine/serine hydroxymethyltransferase 100.0
PLN02271586 serine hydroxymethyltransferase 100.0
COG0112413 GlyA Glycine/serine hydroxymethyltransferase [Amin 100.0
PLN03226475 serine hydroxymethyltransferase; Provisional 99.98
PF00464399 SHMT: Serine hydroxymethyltransferase; InterPro: I 99.96
PRK13580493 serine hydroxymethyltransferase; Provisional 99.92
PTZ00094452 serine hydroxymethyltransferase; Provisional 99.83
PRK13034416 serine hydroxymethyltransferase; Reviewed 99.72
PRK00011416 glyA serine hydroxymethyltransferase; Reviewed 99.37
cd00378402 SHMT Serine-glycine hydroxymethyltransferase (SHMT 98.98
cd00617431 Tnase_like Tryptophanase family (Tnase). This fami 97.83
PRK13238460 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d 97.58
TIGR01979403 sufS cysteine desulfurases, SufS subfamily. This m 89.74
PRK06225380 aspartate aminotransferase; Provisional 88.95
cd00616352 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa 88.51
PRK00950361 histidinol-phosphate aminotransferase; Validated 86.37
PLN02721353 threonine aldolase 85.41
cd06451356 AGAT_like Alanine-glyoxylate aminotransferase (AGA 84.78
PRK13520371 L-tyrosine decarboxylase; Provisional 84.51
PRK02731367 histidinol-phosphate aminotransferase; Validated 83.27
KOG1486364 consensus GTP-binding protein DRG2 (ODN superfamil 81.43
>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=3.1e-42  Score=294.05  Aligned_cols=136  Identities=62%  Similarity=0.957  Sum_probs=128.5

Q ss_pred             CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032233            1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF   80 (144)
Q Consensus         1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~   80 (144)
                      +||+++|||||||||||||++.|++|..+|++||.|+|.+|||++|+|.+++.||||||||||||+|||.|+||++|+++
T Consensus       340 ~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGiRiGtPAmTsRG~~e~df~~v~~f  419 (477)
T KOG2467|consen  340 RGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKSALSPGGIRIGTPAMTSRGFGEEDFEKVADF  419 (477)
T ss_pred             cCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCccccCCCceeccchhhcccCccHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcccchhhhHHhhhcccc-cHHHHHHHHHHHHHHHhhCCCCCCc
Q 032233           81 FDAAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRCHDVEEYAKQFPTIGFE  136 (144)
Q Consensus        81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ir~~V~~l~~~fPi~~~~  136 (144)
                      |+++++++.+++.+.++++++||++.+.+++ ..+++.++|++|++|+.+||+|+++
T Consensus       420 i~~av~i~~~~~~~~~~~~lkdf~~~~~~~~~~~~~v~~Lr~~Ve~fa~~fp~pg~~  476 (477)
T KOG2467|consen  420 IDRAVKIALEIQKEAGGKKLKDFKKFLSENKVMSEEVAELRKRVEEFAGQFPMPGFE  476 (477)
T ss_pred             HHHHHHHHHHHHhhcccchHHHHHHHhccCchhHHHHHHHHHHHHHHHhcCCCCCCC
Confidence            9999999999998766699999999887654 3357899999999999999999975

>PLN02271 serine hydroxymethyltransferase Back     alignment and domain information
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism] Back     alignment and domain information
>PLN03226 serine hydroxymethyltransferase; Provisional Back     alignment and domain information
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) [] Back     alignment and domain information
>PRK13580 serine hydroxymethyltransferase; Provisional Back     alignment and domain information
>PTZ00094 serine hydroxymethyltransferase; Provisional Back     alignment and domain information
>PRK13034 serine hydroxymethyltransferase; Reviewed Back     alignment and domain information
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed Back     alignment and domain information
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT) Back     alignment and domain information
>cd00617 Tnase_like Tryptophanase family (Tnase) Back     alignment and domain information
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional Back     alignment and domain information
>TIGR01979 sufS cysteine desulfurases, SufS subfamily Back     alignment and domain information
>PRK06225 aspartate aminotransferase; Provisional Back     alignment and domain information
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn) Back     alignment and domain information
>PRK00950 histidinol-phosphate aminotransferase; Validated Back     alignment and domain information
>PLN02721 threonine aldolase Back     alignment and domain information
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family Back     alignment and domain information
>PRK13520 L-tyrosine decarboxylase; Provisional Back     alignment and domain information
>PRK02731 histidinol-phosphate aminotransferase; Validated Back     alignment and domain information
>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
1bj4_A470 Recombinant Serine Hydroxymethyltransferase (human) 4e-35
3ou5_A490 Human Mitochondrial Serine Hydroxymethyltransferase 2e-34
1rv3_A483 E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethy 5e-32
1cj0_A470 Crystal Structure Of Rabbit Cytosolic Serine Hydrox 5e-32
1rvu_A483 E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethy 6e-32
1ls3_B483 Crystal Structure Of The Complex Between Rabbit Cyt 6e-32
1eji_A478 Recombinant Serine Hydroxymethyltransferase (Mouse) 8e-32
2dkj_A407 Crystal Structure Of T.Th.Hb8 Serine Hydroxymethylt 2e-17
3pgy_A415 Serine Hydroxymethyltransferase From Staphylococcus 1e-15
1yjs_A419 K226q Mutant Of Serine Hydroxymethyltransferase Fro 2e-15
1kkj_A419 Crystal Structure Of Serine Hydroxymethyltransferas 2e-15
1yjy_A419 K226m Mutant Of Serine Hydroxymethyltransferase Fro 2e-15
2vi8_A405 Crystal Structure Of S172absshmt Internal Aldimine 3e-15
2vgs_A407 Crystal Structure Of E53qbsshmt Internal Aldimine L 3e-15
2w7i_A405 Crystal Structure Of Y61absshmt Internal Aldimine L 3e-15
2vmr_A405 Crystal Structure Of Y60absshmt Internal Aldimine L 3e-15
2w7d_A405 Crystal Structure Of Y51fbsshmt Internal Aldimine L 3e-15
3ecd_A425 Crystal Structure Of Serine Hydroxymethyltransferas 3e-15
2vmv_A405 Crystal Structure Of F351gbsshmt Internal Aldimine 6e-15
3h7f_A447 Crystal Structure Of Serine Hydroxymethyltransferas 9e-15
2vmn_A405 Crystal Structure Of N341absshmt Internal Aldimine 2e-14
1dfo_A417 Crystal Structure At 2.4 Angstrom Resolution Of E. 3e-14
1eqb_A417 X-Ray Crystal Structure At 2.7 Angstroms Resolution 3e-14
3g8m_A417 Serine Hydroxymethyltransferase Y55f Mutant Length 3e-14
3gbx_A420 Serine Hydroxymethyltransferase From Salmonella Typ 4e-14
3n0l_A417 Crystal Structure Of Serine Hydroxymethyltransferas 5e-13
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human) Length = 470 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 67/136 (49%), Positives = 95/136 (69%), Gaps = 1/136 (0%)
Query: 1   MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMG 60
           +GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+G
Sbjct: 335 LGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLG 394
Query: 61  TPALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQ-GTKLKDFVATTQSANFQSEIAKR 119
           TPALTSRG +E+DF KVA+F    ++LT++I+S+T     LK+F        +Q+ +   
Sbjct: 395 TPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDTGVAATLKEFKERLAGDKYQAAVQAL 454
Query: 120 CHDVEEYAKQFPTIGF 135
             +VE +A  FP  G 
Sbjct: 455 REEVESFASLFPLPGL 470
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2 Length = 490 Back     alignment and structure
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase, Complex With Glycine Length = 483 Back     alignment and structure
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine Hydroxymethyltransferase At 2.8 Angstrom Resolution Length = 470 Back     alignment and structure
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine Hydroxymethyltransferase Length = 483 Back     alignment and structure
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic Serine Hydroxymethyltransferase And Triglu-5-Formyl-Tetrahydrofolate Length = 483 Back     alignment and structure
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse) Length = 478 Back     alignment and structure
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine Hydroxymethyltransferase Length = 407 Back     alignment and structure
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus Aureus, S95p Mutant. Length = 415 Back     alignment and structure
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Glycine Length = 419 Back     alignment and structure
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From B.Stearothermophilus Length = 419 Back     alignment and structure
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B. Stearothermophilus, Complex With Serine Length = 419 Back     alignment and structure
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine Length = 405 Back     alignment and structure
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine Length = 407 Back     alignment and structure
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine Length = 405 Back     alignment and structure
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine Length = 405 Back     alignment and structure
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine Length = 405 Back     alignment and structure
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Burkholderia Pseudomallei Length = 425 Back     alignment and structure
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine Length = 405 Back     alignment and structure
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Mycobacterium Tuberculosis Length = 447 Back     alignment and structure
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine Length = 405 Back     alignment and structure
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli Serine Hydroxymethyltransferase In Complex With Glycine And 5-Formyl Tetrahydrofolate Length = 417 Back     alignment and structure
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of Ternary Complex Between The Y65f Mutant Of E-Coli Serine Hydroxymethyltransferase, Glycine And 5-Formyl Tetrahydrofolate Length = 417 Back     alignment and structure
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant Length = 417 Back     alignment and structure
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella Typhimurium Length = 420 Back     alignment and structure
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From Campylobacter Jejuni Length = 417 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query144
1rv3_A483 Serine hydroxymethyltransferase, cytosolic; one-ca 4e-60
2a7v_A490 Serine hydroxymethyltransferase; structural genomi 2e-59
2dkj_A407 Serine hydroxymethyltransferase; PLP dependent enz 1e-33
2vi8_A405 Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, 2e-33
3h7f_A447 Serine hydroxymethyltransferase 1; cytoplasm, one- 4e-33
3gbx_A420 Serine hydroxymethyltransferase; structural genomi 5e-33
3n0l_A417 Serine hydroxymethyltransferase; alpha beta class, 8e-33
3ecd_A425 Serine hydroxymethyltransferase 2; ssgcid, decode, 1e-32
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Length = 483 Back     alignment and structure
 Score =  191 bits (488), Expect = 4e-60
 Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 2/137 (1%)

Query: 2   GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
           GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GT
Sbjct: 345 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 404

Query: 62  PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSET-QGTKLKDFVATTQS-ANFQSEIAKR 119
           PALTSRG +E+DF KVA+F    ++LTV+I+ +T     LK+F          Q  +   
Sbjct: 405 PALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRAL 464

Query: 120 CHDVEEYAKQFPTIGFE 136
             +VE +A  FP  G  
Sbjct: 465 RQEVESFAALFPLPGLP 481
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} SCOP: c.67.1.4 PDB: 3ou5_A Length = 490 Back     alignment and structure
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Length = 407 Back     alignment and structure
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Length = 405 Back     alignment and structure
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Length = 447 Back     alignment and structure
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A* 3g8m_A* 1eqb_A* Length = 420 Back     alignment and structure
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} Length = 417 Back     alignment and structure
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Length = 425 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
3ou5_A490 Serine hydroxymethyltransferase, mitochondrial; st 100.0
2a7v_A490 Serine hydroxymethyltransferase; structural genomi 99.96
1rv3_A483 Serine hydroxymethyltransferase, cytosolic; one-ca 99.87
3h7f_A447 Serine hydroxymethyltransferase 1; cytoplasm, one- 99.75
3n0l_A417 Serine hydroxymethyltransferase; alpha beta class, 99.54
3gbx_A420 Serine hydroxymethyltransferase; structural genomi 99.44
3ecd_A425 Serine hydroxymethyltransferase 2; ssgcid, decode, 99.32
2dkj_A407 Serine hydroxymethyltransferase; PLP dependent enz 98.46
2vi8_A405 Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, 98.29
1iug_A352 Putative aspartate aminotransferase; wild type, py 92.62
3get_A365 Histidinol-phosphate aminotransferase; NP_281508.1 92.21
3g0t_A437 Putative aminotransferase; NP_905498.1, putative a 92.03
3hbx_A502 GAD 1, glutamate decarboxylase 1; calmodulin-bindi 91.96
3ly1_A354 Putative histidinol-phosphate aminotransferase; st 91.96
2bkw_A385 Alanine-glyoxylate aminotransferase 1; analine-gly 91.11
3ffh_A363 Histidinol-phosphate aminotransferase; APC88260, l 90.85
2gb3_A409 Aspartate aminotransferase; TM1698, structural gen 90.63
3cq5_A369 Histidinol-phosphate aminotransferase; PLP, PMP, a 90.43
1jg8_A347 L-ALLO-threonine aldolase; glycine biosynthesis, p 89.2
3nra_A407 Aspartate aminotransferase; structural genomics, j 89.04
2zyj_A397 Alpha-aminodipate aminotransferase; alpha-aminoadi 88.6
3if2_A444 Aminotransferase; YP_265399.1, structura genomics, 88.31
2vyc_A755 Biodegradative arginine decarboxylase; pyridoxal p 88.22
3kax_A383 Aminotransferase, classes I and II; PLP, C-S lyase 88.13
3dzz_A391 Putative pyridoxal 5'-phosphate-dependent C-S LYA; 88.11
3g7q_A417 Valine-pyruvate aminotransferase; NP_462565.1, str 87.93
1m32_A366 2-aminoethylphosphonate-pyruvate aminotransferase; 87.2
1fc4_A401 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino 87.07
2yrr_A353 Aminotransferase, class V; structural genomics, NP 87.04
3zrp_A384 Serine-pyruvate aminotransferase (AGXT); HET: PLP; 86.97
1gd9_A389 Aspartate aminotransferase; pyridoxal enzyme, temp 86.86
3fdb_A377 Beta C-S lyase, putative PLP-dependent beta-cystat 86.79
3h14_A391 Aminotransferase, classes I and II; YP_167802.1, S 86.59
2po3_A424 4-dehydrase; external aldimine, PLP, aminotransfer 86.57
2fyf_A398 PSAT, phosphoserine aminotransferase; PLP-dependen 86.16
4dq6_A391 Putative pyridoxal phosphate-dependent transferas; 86.15
2c0r_A362 PSAT, phosphoserine aminotransferase; pyridoxal-5' 86.0
3mc6_A497 Sphingosine-1-phosphate lyase; carboxy-lyase activ 85.57
3f9t_A397 TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L 85.49
3tqx_A399 2-amino-3-ketobutyrate coenzyme A ligase; energy m 85.44
1wyu_B474 Glycine dehydrogenase subunit 2 (P-protein); alpha 85.07
3hdo_A360 Histidinol-phosphate aminotransferase; PSI-II, his 84.79
2bwn_A401 5-aminolevulinate synthase; tetrapyrrole biosynthe 84.65
1ax4_A467 Tryptophanase; tryptophan biosynthesis, tryptophan 84.31
3ele_A398 Amino transferase; RER070207001803, structural gen 84.21
3euc_A367 Histidinol-phosphate aminotransferase 2; YP_297314 84.2
2dr1_A386 PH1308 protein, 386AA long hypothetical serine ami 84.15
3kki_A409 CAI-1 autoinducer synthase; quorum sensing, CQSA, 83.97
1t3i_A420 Probable cysteine desulfurase; PLP-binding enzyme, 83.85
2r2n_A425 Kynurenine/alpha-aminoadipate aminotransferase mit 83.35
1j32_A388 Aspartate aminotransferase; HET: PLP; 2.10A {Phorm 83.05
3ez1_A423 Aminotransferase MOCR family; YP_604413.1, struct 82.93
3l8a_A421 METC, putative aminotransferase, probable beta-cys 82.83
1kmj_A406 Selenocysteine lyase; persulfide perselenide NIFS 82.68
4hvk_A382 Probable cysteine desulfurase 2; transferase and I 82.09
3a2b_A398 Serine palmitoyltransferase; vitamin B6-dependent 81.2
1vp4_A425 Aminotransferase, putative; structural genomics, j 81.17
3fkd_A350 L-threonine-O-3-phosphate decarboxylase; structura 81.15
1v2d_A381 Glutamine aminotransferase; PLP, riken structural 80.82
2w8t_A427 SPT, serine palmitoyltransferase; HET: LLP; 1.25A 80.46
2dgk_A452 GAD-beta, GADB, glutamate decarboxylase beta; gadb 80.37
1elu_A390 L-cysteine/L-cystine C-S lyase; FES cluster biosyn 80.3
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=1.2e-42  Score=303.88  Aligned_cols=135  Identities=51%  Similarity=0.861  Sum_probs=123.4

Q ss_pred             CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032233            1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF   80 (144)
Q Consensus         1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~   80 (144)
                      +||+|++|||||||||||++++|++|++|+++|+++||+||||+||+|++|+.||||||||||+|||||+|+||++||+|
T Consensus       354 ~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~  433 (490)
T 3ou5_A          354 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDF  433 (490)
T ss_dssp             TTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHH
T ss_pred             CCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcccchhhhHHhhhcccc-cHHHHHHHHHHHHHHHhhCCCCCCcc
Q 032233           81 FDAAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRCHDVEEYAKQFPTIGFEK  137 (144)
Q Consensus        81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ir~~V~~l~~~fPi~~~~~  137 (144)
                      |+++|..+.+++..  ..++++|+..+..+. +.+.++++|++|.+||++||+|+||+
T Consensus       434 I~~~l~~~~~~~~~--~~kl~~f~~~~~~~~~~~~~i~~lr~~V~~l~~~FP~pg~d~  489 (490)
T 3ou5_A          434 IDEGVNIGLEVKSK--TAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE  489 (490)
T ss_dssp             HHHHHHHHHHHHHT--CCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCSC
T ss_pred             HHHHHHhhhhhhhh--hhhhHHHHHHHhcCcccHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence            99999998888765  346888877654332 34678899999999999999999975
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A Back     alignment and structure
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A* Back     alignment and structure
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis} Back     alignment and structure
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0 Back     alignment and structure
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A* Back     alignment and structure
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei} Back     alignment and structure
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus} Back     alignment and structure
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ... Back     alignment and structure
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3 Back     alignment and structure
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp} Back     alignment and structure
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis} Back     alignment and structure
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana} Back     alignment and structure
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica} Back     alignment and structure
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3 Back     alignment and structure
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0 Back     alignment and structure
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1 Back     alignment and structure
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A Back     alignment and structure
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A* Back     alignment and structure
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides} Back     alignment and structure
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A* Back     alignment and structure
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4} Back     alignment and structure
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli} Back     alignment and structure
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0 Back     alignment and structure
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium} Back     alignment and structure
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3 Back     alignment and structure
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4 Back     alignment and structure
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A* Back     alignment and structure
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A* Back     alignment and structure
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A* Back     alignment and structure
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae} Back     alignment and structure
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3} Back     alignment and structure
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae} Back     alignment and structure
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A* Back     alignment and structure
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A* Back     alignment and structure
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A* Back     alignment and structure
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae} Back     alignment and structure
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii} Back     alignment and structure
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii} Back     alignment and structure
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B* Back     alignment and structure
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15} Back     alignment and structure
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A* Back     alignment and structure
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Back     alignment and structure
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale} Back     alignment and structure
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0 Back     alignment and structure
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii} Back     alignment and structure
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A Back     alignment and structure
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3 Back     alignment and structure
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A* Back     alignment and structure
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1 Back     alignment and structure
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300} Back     alignment and structure
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans} Back     alignment and structure
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A* Back     alignment and structure
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A* Back     alignment and structure
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum} Back     alignment and structure
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1 Back     alignment and structure
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis} Back     alignment and structure
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A* Back     alignment and structure
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A* Back     alignment and structure
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A* Back     alignment and structure
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 144
d1rv3a_470 c.67.1.4 (A:) Serine hydroxymethyltransferase {Rab 2e-39
d2a7va1463 c.67.1.4 (A:26-488) Serine hydroxymethyltransferas 2e-38
d1dfoa_416 c.67.1.4 (A:) Serine hydroxymethyltransferase {Esc 6e-31
d1kl1a_405 c.67.1.4 (A:) Serine hydroxymethyltransferase {Bac 9e-30
d2v1pa1467 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop 5e-08
d1ax4a_465 c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas 1e-05
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Length = 470 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

 Score =  135 bits (342), Expect = 2e-39
 Identities = 67/137 (48%), Positives = 91/137 (66%), Gaps = 2/137 (1%)

Query: 2   GYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGT 61
           GY++V+GG++NHL+LV+L++KG DG R EKVLEA  IA NKNT PGD SA+ P G+R+GT
Sbjct: 332 GYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGT 391

Query: 62  PALTSRGFVEEDFAKVAYFFDAAVKLTVKIKSETQ-GTKLKDFVAT-TQSANFQSEIAKR 119
           PALTSRG +E+DF KVA+F    ++LTV+I+ +T     LK+F          Q  +   
Sbjct: 392 PALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGPRATLKEFKEKLAGDEKHQRAVRAL 451

Query: 120 CHDVEEYAKQFPTIGFE 136
             +VE +A  FP  G  
Sbjct: 452 RQEVESFAALFPLPGLP 468
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Length = 463 Back     information, alignment and structure
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Length = 416 Back     information, alignment and structure
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 405 Back     information, alignment and structure
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467 Back     information, alignment and structure
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query144
d2a7va1463 Serine hydroxymethyltransferase {Human (Homo sapie 100.0
d1rv3a_470 Serine hydroxymethyltransferase {Rabbit (Oryctolag 100.0
d1dfoa_416 Serine hydroxymethyltransferase {Escherichia coli 100.0
d1kl1a_405 Serine hydroxymethyltransferase {Bacillus stearoth 100.0
d1m6sa_343 Low-specificity threonine aldolase {Thermotoga mar 96.83
d1v72a1345 Phenylserine aldolase PSALD {Pseudomonas putida [T 94.19
d2v1pa1467 Tryptophan indol-lyase (tryptophanase) {Escherichi 93.3
d1ax4a_465 Tryptophan indol-lyase (tryptophanase) {Proteus vu 91.74
d1d2fa_361 Modulator in mal gene expression, MalY {Escherichi 88.7
d1lc5a_355 L-threonine-O-3-phosphate decarboxylase CobD {Salm 87.04
d7aata_401 Aspartate aminotransferase, AAT {Chicken (Gallus g 85.88
d1c7ga_456 Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5 85.88
d1ajsa_412 Aspartate aminotransferase, AAT {Pig (Sus scrofa), 83.51
d1gdea_388 Aromatic aminoacid aminotransferase, AroAT {Archae 82.39
d1vjoa_377 Alanine-glyoxylate aminotransferase {Cyanobacteria 81.39
d2bwna1396 5-aminolevulinate synthase {Rhodobacter capsulatus 81.23
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=100.00  E-value=1.1e-41  Score=295.03  Aligned_cols=136  Identities=51%  Similarity=0.856  Sum_probs=124.0

Q ss_pred             CCCeeeeCCCccceeeEeccCCCCCHHHHHHHHhhcCceeecccCCCCCCCCCCCceeecchhhhhcCCCHHHHHHHHHH
Q 032233            1 MGYELVSGGTENHLVLVNLKNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYF   80 (144)
Q Consensus         1 ~G~~vv~ggTd~Hlvlvdl~~~gi~g~~~~~~Le~~gI~vnkn~lP~d~~~~~~sgiRlGT~a~TtRG~~e~dm~~ia~~   80 (144)
                      +||+|++|||||||||||++++|++|..++++|+++||++|||++|+|++|+.||||||||+++|||||+|+||++||+|
T Consensus       327 ~G~~vv~ggTdnHlvlvdl~~~~~~G~~ae~~Le~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~  406 (463)
T d2a7va1         327 RGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDF  406 (463)
T ss_dssp             TTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHH
T ss_pred             CCCeeecCCCCCceeeeeccccCCCHHHHHHHHHhccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhhhhhhhhcccchhhhHHhhhcccc-cHHHHHHHHHHHHHHHhhCCCCCCccc
Q 032233           81 FDAAVKLTVKIKSETQGTKLKDFVATTQSAN-FQSEIAKRCHDVEEYAKQFPTIGFEKE  138 (144)
Q Consensus        81 i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~ir~~V~~l~~~fPi~~~~~~  138 (144)
                      |.++|..+++++.+  ..++++|...+..+. +.+.+++||++|.+||++||+|+||++
T Consensus       407 I~~~l~~~~~~~~~--~~~~~df~~~~~~~~~~~~~i~~lr~~V~~l~~~fP~pg~d~~  463 (463)
T d2a7va1         407 IDEGVNIGLEVKSK--TAKLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDEH  463 (463)
T ss_dssp             HHHHHHHHHHHHHH--CCSHHHHHHHHHHCHHHHHHHHHHHHHHHHHHTTSCCSSCSCC
T ss_pred             HHHHHHHhhhhhhh--hhhhHHHHHHHhcCcccHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            99999999888765  346888877654322 345789999999999999999999864
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} Back     information, alignment and structure
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Back     information, alignment and structure
>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]} Back     information, alignment and structure
>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]} Back     information, alignment and structure
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Back     information, alignment and structure
>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]} Back     information, alignment and structure
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]} Back     information, alignment and structure
>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]} Back     information, alignment and structure