Citrus Sinensis ID: 032263

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MEDCEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNMASSSSSSSITAD
Secondary Structure (PSIPRED)
cccccccccccccccEEcccccccccccccccccccccHHHHHHHHHHHcccccccccccccccccEEEEcccccccccEEEEEccccHHHHHHHHHHHHHHccccccEEcccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEcEEEcccccEEEEEEcccccccEEEEcccccHHHHHHHHHHHHHHHccccEEEccccHcccccccccccccHHHcccHHHHHHcccc
Coil and Loop (DISEMBL)
MEDCEALHDTVKEGWIsfdqldgkstphappqaqasgfrLQKAATMTREIHVRVNyrgvrkrpwgkFAAEIRDRkkngsrlwlgtydtpegaALAYDRAAFKMRgskaklnfpsliasnvepqphgitkknmasssssssitad
Flexible Loop (DISEMBL)
MEDCEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAatmtreihvrvnyrgvrkrpwgkfaaeirdrkkngsrlwlgtydtpEGAALAYDRAAFKMRGSKAKLNFPSLIasnvepqphgitkknmasssssssitad
Low Complexity Region (SEG)
MEDCEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNMAsssssssITAD
Disordered region (IsUnstruct)
***********KEGWISF************************AATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMR****************************************
Disordered Region (DISOPRED)
**DCEALHDTV***********************************************VRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL*****************************
Disordered Region (DISEMBL)
********DTVKEGWISFDQLD**************GFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGI*****************
Disordered Region (DISPRO)
****************************************************RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIA***************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEDCEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGITKKNMASSSSSSSITAD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q8L9K1	226	Ethylene-responsive trans	yes	no	0.722	0.460	0.566	2e-28
Q40479	233	Ethylene-responsive trans	N/A	no	0.611	0.377	0.640	2e-26
Q40476	236	Ethylene-responsive trans	N/A	no	0.590	0.360	0.651	8e-26
Q9LW50	237	Ethylene-responsive trans	N/A	no	0.520	0.316	0.697	9e-25
O80338	243	Ethylene-responsive trans	no	no	0.520	0.308	0.684	2e-23
Q84XB3	244	Ethylene-responsive trans	N/A	no	0.520	0.307	0.671	2e-23
O80337	268	Ethylene-responsive trans	no	no	0.5	0.268	0.698	3e-23
O04681	161	Pathogenesis-related gene	N/A	no	0.590	0.527	0.550	2e-22
P93007	218	Ethylene-responsive trans	no	no	0.743	0.490	0.482	1e-20
Q40478	291	Ethylene-responsive trans	N/A	no	0.444	0.219	0.687	1e-20

>sp|Q8L9K1|ERF99_ARATH Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2

 Score =  124 bits (312), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 9/113 (7%)

Query: 7   LHDTVKEGWI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWG 65
           L D V  GW  S   +   +  + PP  +ASG    +   M         YRGVR+RPWG
Sbjct: 50  LRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM--------QYRGVRRRPWG 101

Query: 66  KFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 118
           KFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNFP LI S
Sbjct: 102 KFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.
Arabidopsis thaliana (taxid: 3702)

>sp|Q40479|ERF2_TOBAC Ethylene-responsive transcription factor 2 OS=Nicotiana tabacum GN=ERF2 PE=2 SV=1

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 71/89 (79%), Gaps = 1/89 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNFP 
Sbjct: 98  HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 157

Query: 115 LIASNVEPQPHGITKKNMASSSSSSSITA 143
            I  N EP+P  +T K  +   +SSSI++
Sbjct: 158 RIGLN-EPEPVRLTAKRRSPEPASSSISS 185

Acts as a transcriptional activator and may be involved in disease resistance pathways. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q40476|ERF1_TOBAC Ethylene-responsive transcription factor 1 OS=Nicotiana tabacum GN=ERF1 PE=2 SV=1

 Score =  115 bits (288), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 56/86 (65%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AA+AYD+AA++MRGSKA LNFP 
Sbjct: 104 HYRGVRRRPWGKFAAEIRDPAKNGARVWLGTYETDEEAAIAYDKAAYRMRGSKAHLNFPH 163

Query: 115 LIASNVEPQPHGITKKNMASSSSSSS 140
            I  N EP+P  +T K  AS   +SS
Sbjct: 164 RIGLN-EPEPVRVTAKRRASPEPASS 188

Probably acts as a transcriptional activator and may be involved in disease resistance pathways (By similarity). Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase cascade and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

>sp|Q9LW50|ERF2_NICSY Ethylene-responsive transcription factor 2 OS=Nicotiana sylvestris GN=ERF2 PE=2 SV=1

 Score =  112 bits (279), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 53/76 (69%), Positives = 63/76 (82%), Gaps = 1/76 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY+T E AALAYD+AA++MRGSKA LNFP 
Sbjct: 102 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYETAEEAALAYDKAAYRMRGSKALLNFPH 161

Query: 115 LIASNVEPQPHGITKK 130
            I  N EP+P  +T K
Sbjct: 162 RIGLN-EPEPVRLTVK 176

Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional activator.

Nicotiana sylvestris (taxid: 4096)

>sp|O80338|EF101_ARATH Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1

 Score =  107 bits (268), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 52/76 (68%), Positives = 61/76 (80%), Gaps = 1/76 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYD AAF+MRGS+A LNFP 
Sbjct: 116 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFPL 175

Query: 115 LIASNVEPQPHGITKK 130
            + S  EP P  IT K
Sbjct: 176 RVNSG-EPDPVRITSK 190

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Involved in disease resistance pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84XB3|ERF1_SOLLC Ethylene-responsive transcription factor 1 OS=Solanum lycopersicum GN=ERF1 PE=2 SV=1

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/76 (67%), Positives = 62/76 (81%), Gaps = 1/76 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGTY++ E AALAY +AAF+MRG+KA LNFP 
Sbjct: 106 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTYESAEEAALAYGKAAFRMRGTKALLNFPH 165

Query: 115 LIASNVEPQPHGITKK 130
            I  N EP+P  +T K
Sbjct: 166 RIGLN-EPEPVRVTVK 180

Involved in the regulation of gene expression during fruit ripening, by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Probably acts as a transcriptional activator and may be involved in disease resistance pathways.

Solanum lycopersicum (taxid: 4081)

>sp|O80337|EF100_ARATH Ethylene-responsive transcription factor 1A OS=Arabidopsis thaliana GN=ERF1A PE=1 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/73 (69%), Positives = 60/73 (82%), Gaps = 1/73 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP 
Sbjct: 147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Query: 115 LIASNVEPQPHGI 127
            + S  EP P  I
Sbjct: 207 RVNSG-EPDPVRI 218

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|O04681|PTI5_SOLLC Pathogenesis-related genes transcriptional activator PTI5 OS=Solanum lycopersicum GN=PTI5 PE=2 SV=1

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 49/89 (55%), Positives = 68/89 (76%), Gaps = 4/89 (4%)

Query: 56  YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 115
           YRGVR+RPWGK+AAEIRD  ++G+R+WLGT++T E AALAYDRAAF+MRG+KA LNFPS 
Sbjct: 59  YRGVRRRPWGKYAAEIRDSARHGARVWLGTFETAEEAALAYDRAAFRMRGAKALLNFPSE 118

Query: 116 IASNVEPQPHGITKKNMASSSSSSSITAD 144
           I +        + K ++ S+S +++  +D
Sbjct: 119 IVN----ASVSVDKLSLCSNSYTTNNNSD 143

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates plants defense genes. Can confer resistance to Pseudomonas syringae tomato by potentiating the transcription of a set of pathogenesis related genes, downstream to a defense signaling pathway involving PTO and PRF, but probably independent of ethylene, jasmonate and salicylic acid.

Solanum lycopersicum (taxid: 4081)

>sp|P93007|EF112_ARATH Ethylene-responsive transcription factor ERF112 OS=Arabidopsis thaliana GN=ERF112 PE=2 SV=1

 Score = 98.6 bits (244), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/116 (48%), Positives = 74/116 (63%), Gaps = 9/116 (7%)

Query: 4   CEALHDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRP 63
           C  L ++    ++S  +L G+  P +    Q+S   LQ+ +   +      NYRGVR+RP
Sbjct: 26  CSTLSESDVSDFVS--ELTGQPIP-SSIDDQSSSLTLQEKSNSRQR-----NYRGVRQRP 77

Query: 64  WGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIASN 119
           WGK+AAEIRD  K  +R+WLGT+DT E AALAYD+AAF+ RG KAKLNFP  I  N
Sbjct: 78  WGKWAAEIRDPNK-AARVWLGTFDTAEEAALAYDKAAFEFRGHKAKLNFPEHIRVN 132

Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40478|ERF5_TOBAC Ethylene-responsive transcription factor 5 OS=Nicotiana tabacum GN=ERF5 PE=2 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 44/64 (68%), Positives = 54/64 (84%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  + G+R+WLGT+DT   AA AYDRAAFK+RGSKA +NFP 
Sbjct: 144 HYRGVRQRPWGKFAAEIRDPNRKGTRVWLGTFDTAIEAAKAYDRAAFKLRGSKAIVNFPL 203

Query: 115 LIAS 118
            +A+
Sbjct: 204 EVAN 207

Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways mediated by ethylene, that seems to depend on a protein kinase/phosphatase cascade, and to be influenced by methyl-jasmonate.

Nicotiana tabacum (taxid: 4097)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
356520778	205	PREDICTED: ethylene-responsive transcrip	0.569	0.4	0.717	5e-27
15225361	226	ethylene-responsive transcription factor	0.722	0.460	0.566	1e-26
224137172	226	AP2/ERF domain-containing transcription	0.534	0.340	0.740	1e-26
21594007	226	putative ethylene response element bindi	0.722	0.460	0.557	9e-26
356523026	240	PREDICTED: ethylene-responsive transcrip	0.625	0.375	0.645	3e-25
224137170	227	AP2/ERF domain-containing transcription	0.472	0.299	0.797	4e-25
255541048	221	Ethylene-responsive transcription factor	0.618	0.402	0.640	4e-25
356531816	203	PREDICTED: ethylene-responsive transcrip	0.631	0.448	0.631	4e-25
356504573	195	PREDICTED: ethylene-responsive transcrip	0.479	0.353	0.782	4e-25
255541050	225	Ethylene-responsive transcription factor	0.652	0.417	0.586	4e-25

>gi|356520778|ref|XP_003529037.1| PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max]

 Score =  125 bits (315), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 61/85 (71%), Positives = 69/85 (81%), Gaps = 3/85 (3%)

Query: 48  REIH---VRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMR 104
           RE+H   V  +YRGVR+R WGKFAAEIRD KKNG+R+WLGTY+T E A LAYDRAAFKMR
Sbjct: 75  REVHAPPVWKHYRGVRRRTWGKFAAEIRDPKKNGARIWLGTYETEEAAGLAYDRAAFKMR 134

Query: 105 GSKAKLNFPSLIASNVEPQPHGITK 129
           GSKAKLNFP LI S+  PQP  +TK
Sbjct: 135 GSKAKLNFPHLIGSHAPPQPVRVTK 159

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15225361|ref|NP_182011.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana] gi|57012834|sp|Q8L9K1.2|ERF99_ARATH RecName: Full=Ethylene-responsive transcription factor 13; Short=AtERF13; AltName: Full=Ethylene-responsive element-binding factor 13; Short=EREBP-13 gi|13272437|gb|AAK17157.1|AF325089_1 putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|13899091|gb|AAK48967.1|AF370540_1 putative ethylene response element binding protein; EREBP [Arabidopsis thaliana] gi|2344900|gb|AAC31840.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|18377440|gb|AAL66886.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana] gi|330255379|gb|AEC10473.1| ethylene-responsive transcription factor 13 [Arabidopsis thaliana]

 Score =  124 bits (312), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 64/113 (56%), Positives = 76/113 (67%), Gaps = 9/113 (7%)

Query: 7   LHDTVKEGWI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWG 65
           L D V  GW  S   +   +  + PP  +ASG    +   M         YRGVR+RPWG
Sbjct: 50  LRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM--------QYRGVRRRPWG 101

Query: 66  KFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 118
           KFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNFP LI S
Sbjct: 102 KFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137172|ref|XP_002327054.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835369|gb|EEE73804.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  124 bits (311), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 66/77 (85%)

Query: 54  VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
           + Y+GVR+RPWGK+AAEIRD KKNG+R+WLGTY+TPE AALAYDRAAFKMRGSKAKLNFP
Sbjct: 116 LQYKGVRRRPWGKYAAEIRDPKKNGARMWLGTYETPEDAALAYDRAAFKMRGSKAKLNFP 175

Query: 114 SLIASNVEPQPHGITKK 130
            LI SN   +P  +T K
Sbjct: 176 HLIGSNNNWEPTRVTSK 192

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21594007|gb|AAM65925.1| putative ethylene response element binding protein (EREBP) [Arabidopsis thaliana]

 Score =  121 bits (304), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 63/113 (55%), Positives = 74/113 (65%), Gaps = 9/113 (7%)

Query: 7   LHDTVKEGWI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWG 65
           L D V   W  S   +   +    PP  +ASG    +   M         YRGVR+RPWG
Sbjct: 50  LRDAVSSAWTPSVPPVTSPAEEDKPPATKASGSHAPRQKGM--------QYRGVRRRPWG 101

Query: 66  KFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS 118
           KFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNFP LI S
Sbjct: 102 KFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGS 154

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523026|ref|XP_003530143.1| PREDICTED: ethylene-responsive transcription factor 13-like [Glycine max]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 60/93 (64%), Positives = 72/93 (77%), Gaps = 3/93 (3%)

Query: 54  VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
           +++RGVR+RPWGK+AAEIRD K+NG R+WLGTY+T E AALAYDRAAFKM GSKAKLNFP
Sbjct: 119 LSFRGVRRRPWGKYAAEIRDAKRNGVRVWLGTYETAENAALAYDRAAFKMHGSKAKLNFP 178

Query: 114 SLIAS---NVEPQPHGITKKNMASSSSSSSITA 143
            LIAS   +VEP    + K +   S SSS + A
Sbjct: 179 HLIASAHHHVEPIRIALKKHSFDVSLSSSEVAA 211

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224137170|ref|XP_002327053.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa] gi|222835368|gb|EEE73803.1| AP2/ERF domain-containing transcription factor [Populus trichocarpa]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 55/69 (79%), Positives = 63/69 (91%), Gaps = 1/69 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           NY+GVR+RPWGK+AAEIRD KKNG+R WLGTY+TPE AA+AYDRAAFKMRG+KAKLNFP 
Sbjct: 118 NYKGVRRRPWGKYAAEIRDPKKNGARQWLGTYETPEDAAMAYDRAAFKMRGAKAKLNFPH 177

Query: 115 LI-ASNVEP 122
           LI +SN EP
Sbjct: 178 LIGSSNYEP 186

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541048|ref|XP_002511588.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548768|gb|EEF50257.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 57/89 (64%), Positives = 68/89 (76%)

Query: 56  YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL 115
           YRGVR+RPWGK+AAEIRD KKNG+R+WLGTY+TPE AALAYD+AAFKMRG KAKLNFP L
Sbjct: 127 YRGVRRRPWGKYAAEIRDPKKNGARVWLGTYETPEDAALAYDQAAFKMRGCKAKLNFPHL 186

Query: 116 IASNVEPQPHGITKKNMASSSSSSSITAD 144
           I SN    P  ++ K  +   ++  I  D
Sbjct: 187 IGSNDYQPPVRVSPKRRSLDPTTLLINHD 215

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356531816|ref|XP_003534472.1| PREDICTED: ethylene-responsive transcription factor 2-like [Glycine max]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 60/95 (63%), Positives = 73/95 (76%), Gaps = 4/95 (4%)

Query: 38  FRLQKA-ATMTREIHVR---VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAA 93
           FR + A A + R++H      +YRGVR+RPWGKFAAEIRD KKNG+R+WLGTYDT E AA
Sbjct: 56  FRSEDATAVVARDVHAPPTWKHYRGVRRRPWGKFAAEIRDPKKNGARVWLGTYDTEEKAA 115

Query: 94  LAYDRAAFKMRGSKAKLNFPSLIASNVEPQPHGIT 128
           LAYD+AAFKMRG KAKLNFP LI S++  +   +T
Sbjct: 116 LAYDKAAFKMRGRKAKLNFPHLIDSDMLSEEVMVT 150

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504573|ref|XP_003521070.1| PREDICTED: ethylene-responsive transcription factor 13-like [Glycine max]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 54/69 (78%), Positives = 62/69 (89%)

Query: 54  VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
           ++YRGVR+RPWGK+AAEIRD K+NG R+WLGTY+T E AALAYDRAAFKMRGSKAKLNFP
Sbjct: 119 LSYRGVRRRPWGKYAAEIRDTKRNGVRVWLGTYETAEDAALAYDRAAFKMRGSKAKLNFP 178

Query: 114 SLIASNVEP 122
            LI S+ EP
Sbjct: 179 HLIGSDHEP 187

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541050|ref|XP_002511589.1| Ethylene-responsive transcription factor, putative [Ricinus communis] gi|223548769|gb|EEF50258.1| Ethylene-responsive transcription factor, putative [Ricinus communis]

 Score =  119 bits (298), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 61/104 (58%), Positives = 73/104 (70%), Gaps = 10/104 (9%)

Query: 41  QKAATMTREIHVRV---------NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEG 91
           QKA T   E+ + +          YRGVR+RPWGK+AAEIRD KKNG+R+WLGTY+ PE 
Sbjct: 95  QKAVTSEEEVAMALKENTPSKGCQYRGVRRRPWGKYAAEIRDPKKNGARIWLGTYEKPED 154

Query: 92  AALAYDRAAFKMRGSKAKLNFPSLIASN-VEPQPHGITKKNMAS 134
           AALAYDRAAFKMRG++AKLNFP LI S+  EP   G  K+   S
Sbjct: 155 AALAYDRAAFKMRGARAKLNFPHLIGSDEYEPIRAGNNKRKRCS 198

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2055002	226	ERF13 "ethylene-responsive ele	0.75	0.477	0.559	6.4e-28
UNIPROTKB|Q5MFV1	303	BIERF3 "BTH-induced ERF transc	0.458	0.217	0.696	7.9e-24
TAIR|locus:2171514	243	ERF2 "ethylene responsive elem	0.618	0.366	0.611	1.8e-23
TAIR|locus:2129116	268	ERF-1 "ethylene responsive ele	0.520	0.279	0.684	2.9e-23
TAIR|locus:2038500	244	ORA59 "octadecanoid-responsive	0.5	0.295	0.643	1.7e-20
TAIR|locus:2171529	300	ERF5 "ethylene responsive elem	0.409	0.196	0.745	9.2e-20
TAIR|locus:2018289	133	ERF14 "Ethylene-responsive ele	0.402	0.436	0.724	1.2e-19
TAIR|locus:2183861	212	Rap2.6L "related to AP2 6l" [A	0.527	0.358	0.560	1.2e-19
TAIR|locus:2018635	192	RAP2.6 "related to AP2 6" [Ara	0.659	0.494	0.484	1.5e-19
TAIR|locus:2183304	263	AT5G07310 [Arabidopsis thalian	0.666	0.365	0.5	1.5e-19

TAIR|locus:2055002 ERF13 "ethylene-responsive element binding factor 13" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 66/118 (55%), Positives = 78/118 (66%)

Query:     7 LHDTVKEGWI-SFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWG 65
             L D V  GW  S   +   +  + PP  +ASG    +   M         YRGVR+RPWG
Sbjct:    50 LRDAVSSGWTPSVPPVTSPAEENKPPATKASGSHAPRQKGM--------QYRGVRRRPWG 101

Query:    66 KFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS-NVEP 122
             KFAAEIRD KKNG+R+WLGTY+TPE AA+AYDRAAF++RGSKAKLNFP LI S   EP
Sbjct:   102 KFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNFPHLIGSCKYEP 159

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009733 "response to auxin stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

UNIPROTKB|Q5MFV1 BIERF3 "BTH-induced ERF transcriptional factor 3" [Oryza sativa Indica Group (taxid:39946)]

 Score = 254 (94.5 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
 Identities = 46/66 (69%), Positives = 57/66 (86%)

Query:    55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
             +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT+D+ E AA+AYDRAA++MRGS+A LNFP 
Sbjct:   148 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFDSAEEAAVAYDRAAYRMRGSRALLNFPL 207

Query:   115 LIASNV 120
              I S +
Sbjct:   208 RIGSEI 213

GO:0009620 "response to fungus" evidence=IC

TAIR|locus:2171514 ERF2 "ethylene responsive element binding factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 270 (100.1 bits), Expect = 1.8e-23, P = 1.8e-23
 Identities = 55/90 (61%), Positives = 66/90 (73%)

Query:    41 QKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAA 100
             +KA  +T       +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYD AA
Sbjct:   102 KKAIPVTETAVKAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAA 161

Query:   101 FKMRGSKAKLNFPSLIASNVEPQPHGITKK 130
             F+MRGS+A LNFP  + S  EP P  IT K
Sbjct:   162 FRMRGSRALLNFPLRVNSG-EPDPVRITSK 190

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IDA;TAS

GO:0005634 "nucleus" evidence=ISM;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009864 "induced systemic resistance, jasmonic acid mediated signaling pathway" evidence=IMP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2129116 ERF-1 "ethylene responsive element binding factor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 2.9e-23, P = 2.9e-23
 Identities = 52/76 (68%), Positives = 61/76 (80%)

Query:    55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
             +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP 
Sbjct:   147 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 206

Query:   115 LIASNVEPQPHGITKK 130
              + S  EP P  I  K
Sbjct:   207 RVNSG-EPDPVRIKSK 221

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0005643 "nuclear pore" evidence=ISS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009737 "response to abscisic acid stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

TAIR|locus:2038500 ORA59 "octadecanoid-responsive Arabidopsis AP2/ERF 59" [Arabidopsis thaliana (taxid:3702)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 47/73 (64%), Positives = 57/73 (78%)

Query:    42 KAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAF 101
             K AT+  E   + +YRGVRKRPWGKFAAEIRD  + G R+WLGT+DT E AALAYD+AAF
Sbjct:    69 KEATVAAEEEEK-SYRGVRKRPWGKFAAEIRDSTRKGIRVWLGTFDTAEAAALAYDQAAF 127

Query:   102 KMRGSKAKLNFPS 114
              ++GS A LNFP+
Sbjct:   128 ALKGSLAVLNFPA 140

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;TAS

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009861 "jasmonic acid and ethylene-dependent systemic resistance" evidence=IMP

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

TAIR|locus:2171529 ERF5 "ethylene responsive element binding factor 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
 Identities = 44/59 (74%), Positives = 50/59 (84%)

Query:    55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
             +YRGVR+RPWGKFAAEIRD  K GSR+WLGT+DT   AA AYD AAF++RGSKA LNFP
Sbjct:   155 HYRGVRQRPWGKFAAEIRDPNKRGSRVWLGTFDTAIEAARAYDEAAFRLRGSKAILNFP 213

GO:0003677 "DNA binding" evidence=IEA;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IC;TAS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;IDA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA;TAS

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0009409 "response to cold" evidence=IEP

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2018289 ERF14 "Ethylene-responsive element binding factor 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 42/58 (72%), Positives = 49/58 (84%)

Query:    56 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
             YRGVR+RPWGK+AAEIRD +K+G R+WLGT+DT E AA AYDRAA+ MRG  A LNFP
Sbjct:    20 YRGVRRRPWGKYAAEIRDSRKHGERVWLGTFDTAEDAARAYDRAAYSMRGKAAILNFP 77

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009873 "ethylene mediated signaling pathway" evidence=TAS

TAIR|locus:2183861 Rap2.6L "related to AP2 6l" [Arabidopsis thaliana (taxid:3702)]

 Score = 234 (87.4 bits), Expect = 1.2e-19, P = 1.2e-19
 Identities = 46/82 (56%), Positives = 61/82 (74%)

Query:    53 RVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNF 112
             R +YRGVR+RPWGK+AAEIRD KK  +R+WLGT++T E AALAYDRAA K +G+KAKLNF
Sbjct:    36 RRHYRGVRQRPWGKWAAEIRDPKK-AARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94

Query:   113 PSLI-----ASNVEPQPHGITK 129
             P  +      + +   P G+++
Sbjct:    95 PERVQGPTTTTTISHAPRGVSE 116

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009651 "response to salt stress" evidence=IMP

GO:0009723 "response to ethylene stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0071497 "cellular response to freezing" evidence=IEP

GO:0009407 "toxin catabolic process" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0010583 "response to cyclopentenone" evidence=RCA

GO:0046482 "para-aminobenzoic acid metabolic process" evidence=RCA

TAIR|locus:2018635 RAP2.6 "related to AP2 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 47/97 (48%), Positives = 62/97 (63%)

Query:    30 PPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTP 89
             PPQ   +G  + K    +  +     YRGVR+RPWGK+AAEIRD  K  +R+WLGT++T 
Sbjct:    35 PPQPLITGSAVTKECESSMSLERPKKYRGVRQRPWGKWAAEIRDPHK-ATRVWLGTFETA 93

Query:    90 EGAALAYDRAAFKMRGSKAKLNFPSLIASN-VEPQPH 125
             E AA AYD AA + RGSKAKLNFP  + +  ++   H
Sbjct:    94 EAAARAYDAAALRFRGSKAKLNFPENVGTQTIQRNSH 130

GO:0003677 "DNA binding" evidence=IEA;ISS;TAS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0009611 "response to wounding" evidence=IEP;RCA

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0009409 "response to cold" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IMP;IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009751 "response to salicylic acid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP;RCA

GO:0034605 "cellular response to heat" evidence=IEP

GO:0009658 "chloroplast organization" evidence=IMP

GO:0009620 "response to fungus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

TAIR|locus:2183304 AT5G07310 [Arabidopsis thaliana (taxid:3702)]

 Score = 233 (87.1 bits), Expect = 1.5e-19, P = 1.5e-19
 Identities = 57/114 (50%), Positives = 73/114 (64%)

Query:     8 HDTVKEGWISFDQLDGKSTPHAPPQAQASGFRLQKAATMTREIHVRVNYRGVRKRPWGKF 67
             HD  +   + ++Q D    P APP  Q  G        + R+ H    YRGVR+RPWGK+
Sbjct:    59 HDNNQHQPVVYNQQD--PNPPAPP-TQDQG--------LLRKRH----YRGVRQRPWGKW 103

Query:    68 AAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP--SLIASN 119
             AAEIRD +K  +R+WLGT++T E AALAYD AA K +GSKAKLNFP  + +ASN
Sbjct:   104 AAEIRDPQK-AARVWLGTFETAEAAALAYDNAALKFKGSKAKLNFPERAQLASN 156

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
smart00380	64	smart00380, AP2, DNA-binding domain in plant prote	2e-31
cd00018	61	cd00018, AP2, DNA-binding domain found in transcri	2e-29
pfam00847	53	pfam00847, AP2, AP2 domain	2e-11

>gnl|CDD|197689 smart00380, AP2, DNA-binding domain in plant proteins such as APETALA2 and EREBPs

 Score =  106 bits (267), Expect = 2e-31
 Identities = 42/59 (71%), Positives = 47/59 (79%), Gaps = 1/59 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
            YRGVR+RPWGK+ AEIRD  K G R+WLGT+DT E AA AYDRAAFK RG  A+LNFP
Sbjct: 1   KYRGVRQRPWGKWVAEIRDPSK-GKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFP 58

Length = 64

>gnl|CDD|237985 cd00018, AP2, DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

 Score =  101 bits (253), Expect = 2e-29
 Identities = 41/59 (69%), Positives = 46/59 (77%), Gaps = 1/59 (1%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
            YRGVR+RPWGK+ AEIRD    G R+WLGT+DT E AA AYDRAA K+RGS A LNFP
Sbjct: 2   KYRGVRQRPWGKWVAEIRDPSG-GRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFP 59

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies. Length = 61

>gnl|CDD|216148 pfam00847, AP2, AP2 domain

 Score = 55.3 bits (134), Expect = 2e-11
 Identities = 24/52 (46%), Positives = 30/52 (57%), Gaps = 3/52 (5%)

Query: 56  YRGVRKRP-WGKFAAEIRDRKKNGS-RLWLGTYDTPEGAALAYDRAAFKMRG 105
           Y+GVR    WG++ AEIRD  +    R  LGT+ T E AA A   A  K+RG
Sbjct: 3   YKGVRYDKRWGRWVAEIRDPGEKKKKRFSLGTFGT-EEAARAAIAARLKLRG 53

This 60 amino acid residue domain can bind to DNA and is found in transcription factor proteins. Length = 53

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
cd00018	61	AP2 DNA-binding domain found in transcription regu	99.87
smart00380	64	AP2 DNA-binding domain in plant proteins such as A	99.83
PHA00280	121	putative NHN endonuclease	99.7
PF00847	56	AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-	99.34
PF14657	46	Integrase_AP2: AP2-like DNA-binding integrase doma	85.26
PHA02601	333	int integrase; Provisional	81.85

>cd00018 AP2 DNA-binding domain found in transcription regulators in plants such as APETALA2 and EREBP (ethylene responsive element binding protein)

Probab=99.87  E-value=4.2e-22  Score=131.16  Aligned_cols=61  Identities=67%  Similarity=1.169  Sum_probs=56.6

Q ss_pred             CceeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCccc
Q 032263           54 VNYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSL  115 (144)
Q Consensus        54 SgyrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l~G~~A~~NFP~~  115 (144)
                      |+|+||+++++|||+|+|+++. .|+.+|||+|+|+|||+.|||.++++++|.++.+|||++
T Consensus         1 s~~~GV~~~~~gkw~A~I~~~~-~gk~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~   61 (61)
T cd00018           1 SKYRGVRQRPWGKWVAEIRDPS-GGRRIWLGTFDTAEEAARAYDRAALKLRGSSAVLNFPDS   61 (61)
T ss_pred             CCccCEEECCCCcEEEEEEeCC-CCceEccCCCCCHHHHHHHHHHHHHHhcCCccccCCCCC
Confidence            6899999888999999999943 189999999999999999999999999999999999974

In EREBPs the domain specifically binds to the 11bp GCC box of the ethylene response element (ERE), a promotor element essential for ethylene responsiveness. EREBPs and the C-repeat binding factor CBF1, which is involved in stress response, contain a single copy of the AP2 domain. APETALA2-like proteins, which play a role in plant development contain two copies.

>smart00380 AP2 DNA-binding domain in plant proteins such as APETALA2 and EREBPs

Probab=99.83  E-value=2.4e-20  Score=124.25  Aligned_cols=63  Identities=65%  Similarity=1.174  Sum_probs=58.1

Q ss_pred             ceeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCcccccC
Q 032263           55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLIAS  118 (144)
Q Consensus        55 gyrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l~G~~A~~NFP~~~~~  118 (144)
                      +|+||+++++|||+|+|+++. +|+.+|||+|+|+||||.|||.++++++|.++.+|||...+.
T Consensus         1 ~~kGV~~~~~gkw~A~I~~~~-~~k~~~lG~f~t~eeAa~Ayd~a~~~~~g~~a~~Nf~~~~y~   63 (64)
T smart00380        1 KYRGVRQRPWGKWVAEIRDPS-KGKRVWLGTFDTAEEAARAYDRAAFKFRGRSARLNFPNSLYD   63 (64)
T ss_pred             CEeeEEeCCCCeEEEEEEecC-CCcEEecCCCCCHHHHHHHHHHHHHHhcCCccccCCCCccCC
Confidence            589999888999999999866 479999999999999999999999999999999999987654

>PHA00280 putative NHN endonuclease

Probab=99.70  E-value=3.8e-17  Score=122.35  Aligned_cols=68  Identities=13%  Similarity=0.154  Sum_probs=61.3

Q ss_pred             hhhhhhhhccccCCCCCceeeeEECC-CCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHhcCCCCC
Q 032263           38 FRLQKAATMTREIHVRVNYRGVRKRP-WGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAK  109 (144)
Q Consensus        38 ~~~~~~~~~~~~~~~~SgyrGV~~~~-~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l~G~~A~  109 (144)
                      -+.++..+++.+++|+|||+||++.+ .|||+|+|.+   +||+++||.|+++|+|+.||+ ++.+|||+||.
T Consensus        51 T~~eN~~N~~~~~~N~SG~kGV~~~k~~~kw~A~I~~---~gK~~~lG~f~~~e~A~~a~~-~~~~lhGeFa~  119 (121)
T PHA00280         51 LPKENSWNMKTPKSNTSGLKGLSWSKEREMWRGTVTA---EGKQHNFRSRDLLEVVAWIYR-TRRELHGQFAR  119 (121)
T ss_pred             CHHHHhcccCCCCCCCCCCCeeEEecCCCeEEEEEEE---CCEEEEcCCCCCHHHHHHHHH-HHHHHhhcccc
Confidence            34578888888899999999999876 7999999999   999999999999999999997 77889999985

>PF00847 AP2: AP2 domain; InterPro: IPR001471 Pathogenesis-related genes transcriptional activator binds to the GCC-box pathogenesis-related promoter element and activates the plant's defence genes

Probab=99.34  E-value=2.5e-12  Score=82.55  Aligned_cols=53  Identities=30%  Similarity=0.439  Sum_probs=46.3

Q ss_pred             CceeeeEECC-CCeEEEEEeccCCCC--eeeccCCCCCHHHHHHHHHHHHHHhcCC
Q 032263           54 VNYRGVRKRP-WGKFAAEIRDRKKNG--SRLWLGTYDTPEGAALAYDRAAFKMRGS  106 (144)
Q Consensus        54 SgyrGV~~~~-~gkW~A~I~~~~~~g--k~i~LGtF~t~EeAA~AYD~Aa~~l~G~  106 (144)
                      |+|+||++.+ .++|+|+|++...+|  ++++||.|++++||++|++.+++.++|+
T Consensus         1 s~~~GV~~~~~~~~W~a~i~~~~~~g~~k~f~~g~fg~~~eA~~~a~~~r~~~~~e   56 (56)
T PF00847_consen    1 SGYKGVSWDKRRGRWRAQIRVWSENGKRKRFSVGKFGFEEEAKRAAIEARKELEGE   56 (56)
T ss_dssp             SSSTTEEEETTTTEEEEEEEECCCTTEEEEEEECCCCCHHHHHHHHHHHHHHCTS-
T ss_pred             CCcEEEEEcCCCCEEEEEEEEcccCcccEEEeCccCCCHHHHHHHHHHHHHHhcCC
Confidence            6899999877 799999999843343  8999999999999999999999999875

Ethylene, chemically the simplest plant hormone, participates in a number of stress responses and developmental processes: e.g., fruit ripening, inhibition of stem and root elongation, promotion of seed germination and flowering, senescence of leaves and flowers, and sex determination []. DNA sequence elements that confer ethylene responsiveness have been shown to contain two 11bp GCC boxes, which are necessary and sufficient for transcriptional control by ethylene. Ethylene responsive element binding proteins (EREBPs) have now been identified in a variety of plants. The proteins share a similar domain of around 59 amino acids, which interacts directly with the GCC box in the ERE.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 3IGM_A 3GCC_A 1GCC_A 2GCC_A.

>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain

Probab=85.26  E-value=3.5  Score=25.24  Aligned_cols=39  Identities=10%  Similarity=0.112  Sum_probs=29.3

Q ss_pred             eEEEEEe-ccCCCC--eeeccCCCCCHHHHHHHHHHHHHHhc
Q 032263           66 KFAAEIR-DRKKNG--SRLWLGTYDTPEGAALAYDRAAFKMR  104 (144)
Q Consensus        66 kW~A~I~-~~~~~g--k~i~LGtF~t~EeAA~AYD~Aa~~l~  104 (144)
                      +|..+|. .....|  ++++-+-|.|..||..+...+...+.
T Consensus         1 ~w~~~v~g~~~~~Gkrk~~~k~GF~TkkeA~~~~~~~~~~~~   42 (46)
T PF14657_consen    1 TWYYRVYGYDDETGKRKQKTKRGFKTKKEAEKALAKIEAELE   42 (46)
T ss_pred             CEEEEEEEEECCCCCEEEEEcCCCCcHHHHHHHHHHHHHHHH
Confidence            5888883 433334  66788899999999999988776653

>PHA02601 int integrase; Provisional

Probab=81.85  E-value=2.6  Score=34.58  Aligned_cols=45  Identities=24%  Similarity=0.275  Sum_probs=31.1

Q ss_pred             eeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHh
Q 032263           58 GVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKM  103 (144)
Q Consensus        58 GV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l  103 (144)
                      +|++.++|+|++++......|+++.. +|.|..||....+.....+
T Consensus         2 ~~~~~~~g~w~~~~~~~~~~g~r~~~-~f~tk~eA~~~~~~~~~~~   46 (333)
T PHA02601          2 AVRKLKDGKWLCEIYPNGRDGKRIRK-RFATKGEALAFENYTMAEV   46 (333)
T ss_pred             ceEEcCCCCEEEEEEECCCCCchhhh-hhcCHHHHHHHHHHHHHhc
Confidence            46666678999999864334777654 6999999876655544444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2gcc_A	70	Solution Structure Of The Gcc-Box Binding Domain, N		2e-22
1gcc_A	63	Solution Nmr Structure Of The Complex Of Gcc-Box Bi		3e-22

>pdb|2GCC|A Chain A, Solution Structure Of The Gcc-Box Binding Domain, Nmr, Minimized Mean Structure Length = 70

Iteration: 1
 Score =  101 bits (251), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 47/64 (73%), Positives = 56/64 (87%)
Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP 
Sbjct: 5   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 64
Query: 115 LIAS 118
            + S
Sbjct: 65  RVNS 68

>pdb|1GCC|A Chain A, Solution Nmr Structure Of The Complex Of Gcc-Box Binding Domain Of Aterf1 And Gcc-Box Dna, Minimized Average Structure Length = 63

Iteration: 1
 Score =  100 bits (249), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 54/59 (91%)
Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
1gcc_A	63	Ethylene responsive element binding factor 1; tran	9e-39

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A Length = 63

 Score =  124 bits (314), Expect = 9e-39
 Identities = 46/62 (74%), Positives = 55/62 (88%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPS 114
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP 
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPL 61

Query: 115 LI 116
            +
Sbjct: 62  RV 63

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
1gcc_A	63	Ethylene responsive element binding factor 1; tran	99.92
3igm_B	77	PF14_0633 protein; AP2 domain, specific transcript	94.42
1u3e_M	174	HNH homing endonuclease; HNH catalytic motif, heli	93.14
1z1b_A	356	Integrase; protein-DNA complex, DNA binding protei	80.03

>1gcc_A Ethylene responsive element binding factor 1; transcription factor, protein-DNA complex, ethylene inducible; HET: DNA; NMR {Arabidopsis thaliana} SCOP: d.10.1.2 PDB: 2gcc_A 3gcc_A

Probab=99.92  E-value=4.6e-26  Score=151.76  Aligned_cols=62  Identities=74%  Similarity=1.296  Sum_probs=58.9

Q ss_pred             ceeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCcccc
Q 032263           55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI  116 (144)
Q Consensus        55 gyrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l~G~~A~~NFP~~~  116 (144)
                      +|+||+++++|||+|+|+++.++|+++|||+|+|+||||+|||.|+++++|.++.+|||+++
T Consensus         2 ~yrGV~~r~~gkw~A~I~~~~~~g~r~~LGtf~T~eeAA~AyD~Aa~~~~G~~a~~NFp~~~   63 (63)
T 1gcc_A            2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcccEeeCCCCcEEEEEccccCCCeEEEeeeCCCHHHHHHHHHHHHHHhcCcccccCCCCcC
Confidence            69999988899999999998877899999999999999999999999999999999999864

>3igm_B PF14_0633 protein; AP2 domain, specific transcription FA protein-DNA complex, transcription-DNA complex; 2.20A {Plasmodium falciparum}

Probab=94.42  E-value=0.019  Score=39.12  Aligned_cols=28  Identities=29%  Similarity=0.319  Sum_probs=22.7

Q ss_pred             CCCCceeeeEECC-CCeEEEEEeccCCCCeee
Q 032263           51 HVRVNYRGVRKRP-WGKFAAEIRDRKKNGSRL   81 (144)
Q Consensus        51 ~~~SgyrGV~~~~-~gkW~A~I~~~~~~gk~i   81 (144)
                      ..+|+|+||+|.+ .+.|.|+-..   +|++.
T Consensus         3 ~~~Sg~pGVsw~kR~~~WlA~W~e---~g~rr   31 (77)
T 3igm_B            3 HMSSGYPGVSWNKRMCAWLAFFYD---GASRR   31 (77)
T ss_dssp             -CCSSSTTEEEETTTTEEEEEEEE---TTEEE
T ss_pred             CCCCCCCcEEeecCCceEEEEEec---CCeEe
Confidence            4689999999887 6999999988   56554

>1u3e_M HNH homing endonuclease; HNH catalytic motif, helix-turn-helix DNA binding domain, PR complex, DNA binding protein-DNA complex; 2.92A {Bacillus phage SPO1} SCOP: d.4.1.3 d.285.1.1

Probab=93.14  E-value=0.0028  Score=47.86  Aligned_cols=38  Identities=8%  Similarity=-0.106  Sum_probs=29.6

Q ss_pred             eeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHH
Q 032263           56 YRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYD   97 (144)
Q Consensus        56 yrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD   97 (144)
                      ++||.+...++|.+.|..   + +.++||.|+|.+|||++|.
T Consensus       109 ~~g~~~~~~~k~~~vi~~---~-~~~~~~~f~s~~eAa~~~G  146 (174)
T 1u3e_M          109 SKAQQIAKIKNQKPIIVI---S-PDGIEKEYPSTKCACEELG  146 (174)
T ss_dssp             HHHHHHHHHHTCCCEEEE---C-TTSCEEEESCHHHHHHHHT
T ss_pred             eeeeeeccCCCCceEEEE---c-CCceEEeeCCHHHHHHHHC
Confidence            467765224678899988   5 5678999999999999974

>1z1b_A Integrase; protein-DNA complex, DNA binding protein/DNA complex; HET: PTR; 3.80A {Enterobacteria phage lambda} SCOP: d.10.1.4 d.163.1.1 PDB: 1z1g_A 1kjk_A 2wcc_3*

Probab=80.03  E-value=2.1  Score=33.48  Aligned_cols=41  Identities=17%  Similarity=0.130  Sum_probs=31.4

Q ss_pred             eeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHh
Q 032263           58 GVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKM  103 (144)
Q Consensus        58 GV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l  103 (144)
                      ||++++.|.|+.++..   +||++.+|.  |..||..+...+...+
T Consensus        15 ~v~~~~~g~~~~r~~~---~gk~~~~g~--t~~eA~~~a~~~~~~~   55 (356)
T 1z1b_A           15 NLYIRNNGYYCYRDPR---TGKEFGLGR--DRRIAITEAIQANIEL   55 (356)
T ss_dssp             TEEEETTTEEEEECTT---TCCEEEEES--CHHHHHHHHHHHHHHH
T ss_pred             cceecCCCeEEEEeec---CCeEEECCC--CHHHHHHHHHHHHHHH
Confidence            5777778899988765   788899996  8888887776655444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	144
d1gcca_	63	d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cr	9e-32

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 63

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  105 bits (264), Expect = 9e-32
 Identities = 46/59 (77%), Positives = 54/59 (91%)

Query: 55  NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFP 113
           +YRGVR+RPWGKFAAEIRD  KNG+R+WLGT++T E AALAYDRAAF+MRGS+A LNFP
Sbjct: 2   HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFP 60

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	144
d1gcca_	63	GCC-box binding domain {Mouse-ear cress (Arabidops	99.92

>d1gcca_ d.10.1.2 (A:) GCC-box binding domain {Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a+b)
fold: DNA-binding domain
superfamily: DNA-binding domain
family: GCC-box binding domain
domain: GCC-box binding domain
species: Mouse-ear cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.92  E-value=2e-26  Score=152.38  Aligned_cols=62  Identities=74%  Similarity=1.296  Sum_probs=58.6

Q ss_pred             ceeeeEECCCCeEEEEEeccCCCCeeeccCCCCCHHHHHHHHHHHHHHhcCCCCCCCCcccc
Q 032263           55 NYRGVRKRPWGKFAAEIRDRKKNGSRLWLGTYDTPEGAALAYDRAAFKMRGSKAKLNFPSLI  116 (144)
Q Consensus        55 gyrGV~~~~~gkW~A~I~~~~~~gk~i~LGtF~t~EeAA~AYD~Aa~~l~G~~A~~NFP~~~  116 (144)
                      +||||+++++|||+|+|+++..+++++|||+|+|+||||+|||.|+++++|.++.+|||..+
T Consensus         2 ~yrGVr~r~~gkw~A~Ir~~~~~~~r~~LGtf~t~eeAArAYD~aa~~~~G~~a~~NFP~~~   63 (63)
T d1gcca_           2 HYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAFRMRGSRALLNFPLRV   63 (63)
T ss_dssp             CCTTEEEETTTEEEEEEEETTTTSEEEEEEEESSHHHHHHHHHHHHHHHHSSCCCCSSCTTC
T ss_pred             CcceEeECCCCCEEEEEecCCCCCcEeccccccCHHHHHHHHHHHHHHhcCCCcccCCCccC
Confidence            59999998899999999998778899999999999999999999999999999999999764