Citrus Sinensis ID: 032473

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA
Secondary Structure (PSIPRED)
ccccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHcccHHEEEcEEEEEEccccEEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEcccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEEEcHHHHHHHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccHHHHHHHHHHHHHcccccHEcccEEEEEEcccEEEEEEEcHHHcccHHHHHHHHHHHHHHHccccEEEEEEcccc
Coil and Loop (DISEMBL)
MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRrivrppkkgsavqrprsrTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFldpkernnteyklesfsgvyrkltgkdvvfdypitda
Flexible Loop (DISEMBL)
mdvsgnrkaivvyvpyrlrkayrKIHSrlvrelekkfsgkdvvliatrrivrppkkgsavqrprsrtltavhdamledvvypaeivgkrvryrldgskiikifldpkernnteyklesfsgvyrkltgkdvvfdypitda
Low Complexity Region (SEG)
MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA
Disordered region (IsUnstruct)
*******KAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV***************TLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPI***
Disordered Region (DISOPRED)
*****NRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATR******************TLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPIT**
Disordered Region (DISEMBL)
MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRP************RTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA
Disordered Region (DISPRO)
****GNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPP*********RSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITDA
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
Q9XH45	191	40S ribosomal protein S7	N/A	no	0.992	0.727	0.798	7e-65
Q8LJU5	192	40S ribosomal protein S7	no	no	1.0	0.729	0.835	8e-65
Q9ZNS1	190	40S ribosomal protein S7	N/A	no	0.992	0.731	0.820	1e-64
Q9C514	191	40S ribosomal protein S7-	yes	no	1.0	0.732	0.821	3e-64
Q8LD03	190	40S ribosomal protein S7-	no	no	0.978	0.721	0.802	6e-64
Q9XET4	192	40S ribosomal protein S7	N/A	no	1.0	0.729	0.814	9e-64
Q9M885	191	40S ribosomal protein S7-	no	no	1.0	0.732	0.792	2e-63
Q949H0	191	40S ribosomal protein S7	N/A	no	0.992	0.727	0.807	7e-62
Q90YR7	194	40S ribosomal protein S7	N/A	no	0.971	0.701	0.614	4e-45
P62083	194	40S ribosomal protein S7	yes	no	0.971	0.701	0.607	2e-44

>sp|Q9XH45|RS7_BRAOL 40S ribosomal protein S7 OS=Brassica oleracea GN=RPS7 PE=2 SV=1

 Score =  245 bits (625), Expect = 7e-65,   Method: Compositional matrix adjust.
 Identities = 111/139 (79%), Positives = 132/139 (94%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MD++GNRKA+V+YVP+RLRKA+RKIHSRLVRELEKKFSG DV+ +ATRRI+RPPKKGSAV
Sbjct: 52  MDIAGNRKAVVIYVPFRLRKAFRKIHSRLVRELEKKFSGNDVIFVATRRIMRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLT+VH+AMLEDV YPAEIVGKR RYR+DG+KI+K++L+PKERNNTEYKLE+  
Sbjct: 112 QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRVDGTKIMKVYLEPKERNNTEYKLETMV 171

Query: 121 GVYRKLTGKDVVFDYPITD 139
           GVYRKLTGKDVVF+YP+ D
Sbjct: 172 GVYRKLTGKDVVFEYPVAD 190

Brassica oleracea (taxid: 3712)

>sp|Q8LJU5|RS7_ORYSJ 40S ribosomal protein S7 OS=Oryza sativa subsp. japonica GN=RPS7 PE=2 SV=2

 Score =  244 bits (624), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 117/140 (83%), Positives = 131/140 (93%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MD+ GNRKA+++YVPYRLRKAY+KIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  MDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
            RPR+RTLTAVHD +LEDVVYPAEIVGKRVRY LDG KI+KIFLDPKERNNTEYKL++FS
Sbjct: 112 VRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFS 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
            VYR+L GKDVVFDYP+T+ 
Sbjct: 172 SVYRRLCGKDVVFDYPMTET 191

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9ZNS1|RS7_AVIMR 40S ribosomal protein S7 OS=Avicennia marina GN=RPS7 PE=2 SV=1

 Score =  244 bits (622), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 135/139 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DVSG +KA+V++VPYRLRK++RKIH RLVRELEKKFSGK+VVLIATRRI+RPPKKGSAV
Sbjct: 52  IDVSGGKKAVVIHVPYRLRKSFRKIHPRLVRELEKKFSGKEVVLIATRRILRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLTAVHDAMLED+VYPAEIVGKRVRYRLDGSKI+K+FLDPK +N+TE KLE+F+
Sbjct: 112 QRPRSRTLTAVHDAMLEDIVYPAEIVGKRVRYRLDGSKIMKVFLDPKAKNDTENKLETFA 171

Query: 121 GVYRKLTGKDVVFDYPITD 139
           GVYRKL+GKDVVF++P+T+
Sbjct: 172 GVYRKLSGKDVVFEFPLTE 190

Avicennia marina (taxid: 82927)

>sp|Q9C514|RS71_ARATH 40S ribosomal protein S7-1 OS=Arabidopsis thaliana GN=RPS7A PE=2 SV=1

 Score =  243 bits (620), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/140 (82%), Positives = 133/140 (95%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +D+SG RKAIVV VPYRLRKAYRKIH RLVRELEKKFSGKDV+LIATRRIVRPPKKGSA 
Sbjct: 52  VDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAA 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           +RPR+RTLT+VH+A+L+DVV PAEIVGKR RYRLDG+KI+K+FLDPKERNNTEYK+E+FS
Sbjct: 112 KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFS 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
            VY+KLTGKDVVF++PIT+A
Sbjct: 172 AVYKKLTGKDVVFEFPITEA 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q8LD03|RS73_ARATH 40S ribosomal protein S7-3 OS=Arabidopsis thaliana GN=RPS7C PE=2 SV=2

 Score =  242 bits (617), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 110/137 (80%), Positives = 129/137 (94%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ + TRRI+RPPKKG+AV
Sbjct: 52  MDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLT+VH+AMLEDV +PAEIVGKR RYRLDGSKI+K+FLD KE+NNTEYKLE+  
Sbjct: 112 QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMV 171

Query: 121 GVYRKLTGKDVVFDYPI 137
           GVYRKLTGKDVVF+YP+
Sbjct: 172 GVYRKLTGKDVVFEYPV 188

Arabidopsis thaliana (taxid: 3702)

>sp|Q9XET4|RS7_SECCE 40S ribosomal protein S7 OS=Secale cereale GN=RPS7 PE=2 SV=1

 Score =  241 bits (615), Expect = 9e-64,   Method: Compositional matrix adjust.
 Identities = 114/140 (81%), Positives = 131/140 (93%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MDV+GNRKA+V++VPYRLRK +RKIH RLVRELEKKFSGKDVV++ATRRIVRPPKKGSAV
Sbjct: 52  MDVAGNRKAVVIHVPYRLRKNFRKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
            RPR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDGSKIIKIFLDP ERNNTEYKL++F+
Sbjct: 112 VRPRTRTLTAVHDGLLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPMERNNTEYKLDTFT 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
            VYR+L GKDVV++YP+ + 
Sbjct: 172 AVYRRLCGKDVVYEYPVAET 191

Secale cereale (taxid: 4550)

>sp|Q9M885|RS72_ARATH 40S ribosomal protein S7-2 OS=Arabidopsis thaliana GN=RPS7B PE=2 SV=1

 Score =  240 bits (613), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 111/140 (79%), Positives = 131/140 (93%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ +ATRRI+RPPKKGSAV
Sbjct: 52  MDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLT+VH+AMLEDV YPAEIVGKR RYRLDG+KI+K+FLD K +N+TEYKLE+  
Sbjct: 112 QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMV 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVF+YP+ +A
Sbjct: 172 GVYRKLTGKDVVFEYPVIEA 191

Arabidopsis thaliana (taxid: 3702)

>sp|Q949H0|RS7_HORVU 40S ribosomal protein S7 OS=Hordeum vulgare GN=RPS7 PE=2 SV=1

 Score =  235 bits (599), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 129/140 (92%), Gaps = 1/140 (0%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MDV GNRKA+V++VPYRLRK +RKIH RLVRELE+  SGKDVV +ATRRIVRPPKKGSAV
Sbjct: 52  MDVVGNRKAVVIHVPYRLRKPFRKIHVRLVRELER-VSGKDVVFVATRRIVRPPKKGSAV 110

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLTAVHD +LEDVVYPAEIVGKRVRYRLDG+K+IKI+LDPKERNNTEYKLE+FS
Sbjct: 111 QRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYRLDGAKVIKIYLDPKERNNTEYKLETFS 170

Query: 121 GVYRKLTGKDVVFDYPITDA 140
            VYR+L GKDVVF+YP+ + 
Sbjct: 171 AVYRRLCGKDVVFEYPVAET 190

Hordeum vulgare (taxid: 4513)

>sp|Q90YR7|RS7_ICTPU 40S ribosomal protein S7 OS=Ictalurus punctatus GN=rps7 PE=2 SV=1

 Score =  179 bits (454), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 86/140 (61%), Positives = 114/140 (81%), Gaps = 4/140 (2%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           ++V G+RKAI+++VP    KA++KI  RLVRELEKKFSGK VV IA RRI+  P + S  
Sbjct: 51  IEVGGSRKAIIIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT 110

Query: 61  Q----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKL 116
           +    RPRSRTLTAVHDA+LED+VYP+EIVGKR+R +LD S++IK+ LD  ++NN E+K+
Sbjct: 111 KNKQKRPRSRTLTAVHDAILEDLVYPSEIVGKRIRVKLDSSRLIKVHLDKAQQNNVEHKV 170

Query: 117 ESFSGVYRKLTGKDVVFDYP 136
           E+F+GVY+KLTGKDVVF++P
Sbjct: 171 ETFAGVYKKLTGKDVVFEFP 190

Ictalurus punctatus (taxid: 7998)

>sp|P62083|RS7_RAT 40S ribosomal protein S7 OS=Rattus norvegicus GN=Rps7 PE=1 SV=1

 Score =  177 bits (448), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 85/140 (60%), Positives = 113/140 (80%), Gaps = 4/140 (2%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           ++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  
Sbjct: 51  IEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT 110

Query: 61  Q----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKL 116
           +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+
Sbjct: 111 KNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 170

Query: 117 ESFSGVYRKLTGKDVVFDYP 136
           E+FSGVY+KLTGKDV F++P
Sbjct: 171 ETFSGVYKKLTGKDVNFEFP 190

Required for rRNA maturation.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
224138846	191	predicted protein [Populus trichocarpa]	1.0	0.732	0.907	1e-68
118483548	191	unknown [Populus trichocarpa]	1.0	0.732	0.9	2e-68
351727278	191	uncharacterized protein LOC100500684 [Gl	1.0	0.732	0.892	2e-68
224087437	214	predicted protein [Populus trichocarpa]	1.0	0.654	0.885	7e-68
118483935	191	unknown [Populus trichocarpa]	1.0	0.732	0.9	9e-68
255581332	191	40S ribosomal protein S7, putative [Rici	1.0	0.732	0.892	1e-67
118486144	191	unknown [Populus trichocarpa]	1.0	0.732	0.885	2e-67
224077178	191	predicted protein [Populus trichocarpa]	1.0	0.732	0.885	2e-67
351725251	191	uncharacterized protein LOC100305484 [Gl	1.0	0.732	0.885	2e-67
225452053	191	PREDICTED: 40S ribosomal protein S7 [Vit	1.0	0.732	0.878	4e-67

>gi|224138846|ref|XP_002322916.1| predicted protein [Populus trichocarpa] gi|222867546|gb|EEF04677.1| predicted protein [Populus trichocarpa]

 Score =  263 bits (673), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 127/140 (90%), Positives = 137/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DV+GNRKAIV+YVPYRLRKAYRKIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  IDVAGNRKAIVIYVPYRLRKAYRKIHLRLVRELEKKFSGKDVVLLATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLTAVH+AMLED+VYPAEIVGKR RYR+DGSKI KIFLDPKERNNTEYKLESF+
Sbjct: 112 QRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESFA 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVFD+PIT+A
Sbjct: 172 GVYRKLTGKDVVFDFPITEA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483548|gb|ABK93672.1| unknown [Populus trichocarpa]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 126/140 (90%), Positives = 137/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DV+GNRKAI++YVPYRLRKAYRKIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  IDVAGNRKAIIIYVPYRLRKAYRKIHLRLVRELEKKFSGKDVVLLATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLTAVH+AMLED+VYPAEIVGKR RYR+DGSKI KIFLDPKERNNTEYKLESF+
Sbjct: 112 QRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESFA 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVFD+PIT+A
Sbjct: 172 GVYRKLTGKDVVFDFPITEA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727278|ref|NP_001237923.1| uncharacterized protein LOC100500684 [Glycine max] gi|255630929|gb|ACU15827.1| unknown [Glycine max]

 Score =  263 bits (671), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 138/140 (98%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MDV+GNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDVV IATRRIVRPPKKGSAV
Sbjct: 52  MDVAGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVVFIATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLTAVHDAMLEDVVYPAEIVGKRVRYR+DGSKI+K+FLDPKERNNTEYKLE+FS
Sbjct: 112 QRPRTRTLTAVHDAMLEDVVYPAEIVGKRVRYRIDGSKIMKVFLDPKERNNTEYKLETFS 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVF+YPI++A
Sbjct: 172 GVYRKLTGKDVVFEYPISEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087437|ref|XP_002308166.1| predicted protein [Populus trichocarpa] gi|222854142|gb|EEE91689.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (667), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 137/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DV+GNRKAIV+YVPYRLRKAYRK+H RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 75  IDVAGNRKAIVIYVPYRLRKAYRKVHLRLVRELEKKFSGKDVVLLATRRIVRPPKKGSAV 134

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLTAVH+AMLED+VYPAEIVGKR RYR+DGSKI KIFLDPKERNNTEYKLES++
Sbjct: 135 QRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESYA 194

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVFD+P+T+A
Sbjct: 195 GVYRKLTGKDVVFDFPVTEA 214

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118483935|gb|ABK93856.1| unknown [Populus trichocarpa]

 Score =  261 bits (666), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 126/140 (90%), Positives = 136/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DV+GNRKAIV+YVPYRLRKAYRKIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  IDVAGNRKAIVIYVPYRLRKAYRKIHLRLVRELEKKFSGKDVVLLATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRP SRTLTAVH+AMLED+VYPAEIVGKR RYR+DGSKI KIFLDPKERNNTEYKLESF+
Sbjct: 112 QRPGSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESFA 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVFD+PIT+A
Sbjct: 172 GVYRKLTGKDVVFDFPITEA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581332|ref|XP_002531476.1| 40S ribosomal protein S7, putative [Ricinus communis] gi|223528903|gb|EEF30900.1| 40S ribosomal protein S7, putative [Ricinus communis]

 Score =  260 bits (664), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 125/140 (89%), Positives = 136/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MDV+GNRKA+V+YVPYRLRKAYRKIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  MDVAGNRKAVVIYVPYRLRKAYRKIHLRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLTAVHDAMLEDVVYPAEIVGKR RYR+DGSK +KIFLDPKER NTEYKLE+F+
Sbjct: 112 QRPRTRTLTAVHDAMLEDVVYPAEIVGKRTRYRIDGSKTMKIFLDPKERINTEYKLETFT 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVF+YPIT+A
Sbjct: 172 GVYRKLTGKDVVFEYPITEA 191

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118486144|gb|ABK94915.1| unknown [Populus trichocarpa]

 Score =  260 bits (664), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 137/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DV+GNRKAIV+YVPYRLRKAYRK+H RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  IDVAGNRKAIVIYVPYRLRKAYRKVHLRLVRELEKKFSGKDVVLLATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLTAVH+AMLED+VYPAEIVGKR RYR+DGSKI KIFLDPKERNNTEYKLES++
Sbjct: 112 QRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESYA 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVFD+P+T+A
Sbjct: 172 GVYRKLTGKDVVFDFPVTEA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077178|ref|XP_002305166.1| predicted protein [Populus trichocarpa] gi|118484634|gb|ABK94189.1| unknown [Populus trichocarpa] gi|222848130|gb|EEE85677.1| predicted protein [Populus trichocarpa]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 137/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +DV+GNRKAIV+YVPYRLRKAYRK+H RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct: 52  IDVAGNRKAIVIYVPYRLRKAYRKVHLRLVRELEKKFSGKDVVLLATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLTAVH+AMLED+VYPAEIVGKR RYR+DGSKI KIFLDPKERNNTEYKLES++
Sbjct: 112 QRPRSRTLTAVHEAMLEDLVYPAEIVGKRTRYRIDGSKISKIFLDPKERNNTEYKLESYA 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVFD+P+T+A
Sbjct: 172 GVYRKLTGKDVVFDFPVTEA 191

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725251|ref|NP_001236062.1| uncharacterized protein LOC100305484 [Glycine max] gi|255625649|gb|ACU13169.1| unknown [Glycine max]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 124/140 (88%), Positives = 137/140 (97%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           MDV+GNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGK VVLIATRRIVRPPKKGSAV
Sbjct: 52  MDVAGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKGVVLIATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPR+RTLTAVHDAMLEDVVYPAEIVGKR RYR+DGSKI+K+FLDPKERNNTEYKLE+FS
Sbjct: 112 QRPRTRTLTAVHDAMLEDVVYPAEIVGKRARYRIDGSKIMKVFLDPKERNNTEYKLETFS 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKLTGKDVVF+YPI++A
Sbjct: 172 GVYRKLTGKDVVFEYPISEA 191

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225452053|ref|XP_002283918.1| PREDICTED: 40S ribosomal protein S7 [Vitis vinifera] gi|147841343|emb|CAN60178.1| hypothetical protein VITISV_011364 [Vitis vinifera]

 Score =  259 bits (661), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/140 (87%), Positives = 138/140 (98%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           +D+SGNRKAIVV+VPYRLRK YRKIH +LVRELEKKFSGK+VVLIATRRIVRPPKKGSAV
Sbjct: 52  IDISGNRKAIVVHVPYRLRKGYRKIHLKLVRELEKKFSGKEVVLIATRRIVRPPKKGSAV 111

Query: 61  QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
           QRPRSRTLT+VH+AMLED+VYPAEIVGKR+RYRLDGSKIIKIFLDPKERNNTEYKLE+F+
Sbjct: 112 QRPRSRTLTSVHEAMLEDIVYPAEIVGKRIRYRLDGSKIIKIFLDPKERNNTEYKLETFA 171

Query: 121 GVYRKLTGKDVVFDYPITDA 140
           GVYRKL+GKDVVF+YP+T+A
Sbjct: 172 GVYRKLSGKDVVFEYPLTEA 191

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
UNIPROTKB|Q10MS5	192	Os03g0297100 "Os03g0297100 pro	0.992	0.723	0.827	2.7e-61
UNIPROTKB|Q8LJU5	192	RPS7 "40S ribosomal protein S7	0.992	0.723	0.841	7.1e-61
TAIR|locus:2200839	191	AT1G48830 [Arabidopsis thalian	1.0	0.732	0.821	2.2e-59
TAIR|locus:2181402	190	AT5G16130 [Arabidopsis thalian	0.978	0.721	0.802	9.3e-59
TAIR|locus:2076839	191	AT3G02560 [Arabidopsis thalian	1.0	0.732	0.792	1.2e-58
UNIPROTKB|A8JGI9	194	RPS7 "Ribosomal protein S7" [C	1.0	0.721	0.666	7.4e-50
UNIPROTKB|F1NN16	201	RPS7 "Uncharacterized protein"	0.971	0.676	0.614	6.6e-42
UNIPROTKB|A6H769	194	RPS7 "40S ribosomal protein S7	0.971	0.701	0.607	3.6e-41
UNIPROTKB|E2R8A8	180	RPS7 "Uncharacterized protein"	0.971	0.755	0.607	3.6e-41
UNIPROTKB|P62081	194	RPS7 "40S ribosomal protein S7	0.971	0.701	0.607	3.6e-41

UNIPROTKB|Q10MS5 Os03g0297100 "Os03g0297100 protein" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 627 (225.8 bits), Expect = 2.7e-61, P = 2.7e-61
 Identities = 115/139 (82%), Positives = 134/139 (96%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             MD++GNRKA+V++VPYRLRKA++KIH RLVRELEKKFSGKDVV++ATRRIVRPPKKGSAV
Sbjct:    52 MDIAGNRKAVVIHVPYRLRKAFKKIHVRLVRELEKKFSGKDVVIVATRRIVRPPKKGSAV 111

Query:    61 QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
             QRPR+RTLTAVHD +LEDVVYPAEIVGKR+RYRLDG+K+IKIFLDPKERNNTEYKLE+FS
Sbjct:   112 QRPRTRTLTAVHDGILEDVVYPAEIVGKRIRYRLDGAKVIKIFLDPKERNNTEYKLETFS 171

Query:   121 GVYRKLTGKDVVFDYPITD 139
              VYR+L GKDV F+YP+T+
Sbjct:   172 AVYRRLCGKDVAFEYPMTE 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|Q8LJU5 RPS7 "40S ribosomal protein S7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 117/139 (84%), Positives = 131/139 (94%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             MD+ GNRKA+++YVPYRLRKAY+KIH RLVRELEKKFSGKDVVL+ATRRIVRPPKKGSAV
Sbjct:    52 MDLPGNRKAVIIYVPYRLRKAYKKIHVRLVRELEKKFSGKDVVLVATRRIVRPPKKGSAV 111

Query:    61 QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
              RPR+RTLTAVHD +LEDVVYPAEIVGKRVRY LDG KI+KIFLDPKERNNTEYKL++FS
Sbjct:   112 VRPRTRTLTAVHDGILEDVVYPAEIVGKRVRYHLDGRKIMKIFLDPKERNNTEYKLDTFS 171

Query:   121 GVYRKLTGKDVVFDYPITD 139
              VYR+L GKDVVFDYP+T+
Sbjct:   172 SVYRRLCGKDVVFDYPMTE 190

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

TAIR|locus:2200839 AT1G48830 [Arabidopsis thaliana (taxid:3702)]

 Score = 609 (219.4 bits), Expect = 2.2e-59, P = 2.2e-59
 Identities = 115/140 (82%), Positives = 133/140 (95%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             +D+SG RKAIVV VPYRLRKAYRKIH RLVRELEKKFSGKDV+LIATRRIVRPPKKGSA 
Sbjct:    52 VDISGGRKAIVVNVPYRLRKAYRKIHVRLVRELEKKFSGKDVILIATRRIVRPPKKGSAA 111

Query:    61 QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
             +RPR+RTLT+VH+A+L+DVV PAEIVGKR RYRLDG+KI+K+FLDPKERNNTEYK+E+FS
Sbjct:   112 KRPRNRTLTSVHEAILDDVVLPAEIVGKRTRYRLDGTKIMKVFLDPKERNNTEYKVEAFS 171

Query:   121 GVYRKLTGKDVVFDYPITDA 140
              VY+KLTGKDVVF++PIT+A
Sbjct:   172 AVYKKLTGKDVVFEFPITEA 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2181402 AT5G16130 [Arabidopsis thaliana (taxid:3702)]

 Score = 603 (217.3 bits), Expect = 9.3e-59, P = 9.3e-59
 Identities = 110/137 (80%), Positives = 129/137 (94%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ + TRRI+RPPKKG+AV
Sbjct:    52 MDISGNRKAVVIYVPFRLRKAFRKIHPRLVRELEKKFSGKDVIFVTTRRIMRPPKKGAAV 111

Query:    61 QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
             QRPR+RTLT+VH+AMLEDV +PAEIVGKR RYRLDGSKI+K+FLD KE+NNTEYKLE+  
Sbjct:   112 QRPRNRTLTSVHEAMLEDVAFPAEIVGKRTRYRLDGSKIMKVFLDAKEKNNTEYKLETMV 171

Query:   121 GVYRKLTGKDVVFDYPI 137
             GVYRKLTGKDVVF+YP+
Sbjct:   172 GVYRKLTGKDVVFEYPV 188

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0001510 "RNA methylation" evidence=RCA

TAIR|locus:2076839 AT3G02560 [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 111/140 (79%), Positives = 131/140 (93%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             MD+SGNRKA+V+YVP+RLRKA+RKIH RLVRELEKKFSGKDV+ +ATRRI+RPPKKGSAV
Sbjct:    52 MDISGNRKAVVIYVPFRLRKAFRKIHLRLVRELEKKFSGKDVIFVATRRIMRPPKKGSAV 111

Query:    61 QRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFS 120
             QRPR+RTLT+VH+AMLEDV YPAEIVGKR RYRLDG+KI+K+FLD K +N+TEYKLE+  
Sbjct:   112 QRPRNRTLTSVHEAMLEDVAYPAEIVGKRTRYRLDGTKIMKVFLDSKLKNDTEYKLETMV 171

Query:   121 GVYRKLTGKDVVFDYPITDA 140
             GVYRKLTGKDVVF+YP+ +A
Sbjct:   172 GVYRKLTGKDVVFEYPVIEA 191

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006364 "rRNA processing" evidence=IBA

GO:0006412 "translation" evidence=IEA;ISS

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IBA

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS;IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

UNIPROTKB|A8JGI9 RPS7 "Ribosomal protein S7" [Chlamydomonas reinhardtii (taxid:3055)]

 Score = 519 (187.8 bits), Expect = 7.4e-50, P = 7.4e-50
 Identities = 94/141 (66%), Positives = 121/141 (85%)

Query:     1 MDVS-GNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA 59
             +DV+ G RKAI+++VPYRL KA+ KI  RLVRELEKKFSG+DVV++  RRI+ PP+ G  
Sbjct:    53 VDVANGARKAIIIHVPYRLLKAFHKIQQRLVRELEKKFSGRDVVIVGNRRILPPPRNGKT 112

Query:    60 VQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESF 119
               RPRSRTLTAVHDA+L+D+VYP EIVGKR+RYRLDGSKI+K+ LDPK+RN+TEYKLE+F
Sbjct:   113 ASRPRSRTLTAVHDAILDDLVYPTEIVGKRIRYRLDGSKILKVHLDPKDRNSTEYKLETF 172

Query:   120 SGVYRKLTGKDVVFDYPITDA 140
               VY++LTGKDV F++P+ ++
Sbjct:   173 GSVYKRLTGKDVSFEFPVAES 193

GO:0006364 "rRNA processing" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

UNIPROTKB|F1NN16 RPS7 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 86/140 (61%), Positives = 114/140 (81%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             ++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  
Sbjct:    58 IEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT 117

Query:    61 Q----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKL 116
             +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+
Sbjct:   118 KNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 177

Query:   117 ESFSGVYRKLTGKDVVFDYP 136
             E+FSGVY+KLTGKDVVF++P
Sbjct:   178 ETFSGVYKKLTGKDVVFEFP 197

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

UNIPROTKB|A6H769 RPS7 "40S ribosomal protein S7" [Bos taurus (taxid:9913)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/140 (60%), Positives = 113/140 (80%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             ++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  
Sbjct:    51 IEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT 110

Query:    61 Q----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKL 116
             +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+
Sbjct:   111 KNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 170

Query:   117 ESFSGVYRKLTGKDVVFDYP 136
             E+FSGVY+KLTGKDV F++P
Sbjct:   171 ETFSGVYKKLTGKDVNFEFP 190

GO:0042274 "ribosomal small subunit biogenesis" evidence=ISS

GO:0032040 "small-subunit processome" evidence=ISS

GO:0030686 "90S preribosome" evidence=ISS

GO:0022627 "cytosolic small ribosomal subunit" evidence=ISS

GO:0006364 "rRNA processing" evidence=ISS

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|E2R8A8 RPS7 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/140 (60%), Positives = 113/140 (80%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             ++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  
Sbjct:    37 IEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT 96

Query:    61 Q----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKL 116
             +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+
Sbjct:    97 KNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 156

Query:   117 ESFSGVYRKLTGKDVVFDYP 136
             E+FSGVY+KLTGKDV F++P
Sbjct:   157 ETFSGVYKKLTGKDVNFEFP 176

GO:0042274 "ribosomal small subunit biogenesis" evidence=IEA

GO:0022627 "cytosolic small ribosomal subunit" evidence=IEA

GO:0006364 "rRNA processing" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62081 RPS7 "40S ribosomal protein S7" [Homo sapiens (taxid:9606)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/140 (60%), Positives = 113/140 (80%)

Query:     1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
             ++V G RKAI+++VP    K+++KI  RLVRELEKKFSGK VV IA RRI+  P + S  
Sbjct:    51 IEVGGGRKAIIIFVPVPQLKSFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRT 110

Query:    61 Q----RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKL 116
             +    RPRSRTLTAVHDA+LED+V+P+EIVGKR+R +LDGS++IK+ LD  ++NN E+K+
Sbjct:   111 KNKQKRPRSRTLTAVHDAILEDLVFPSEIVGKRIRVKLDGSRLIKVHLDKAQQNNVEHKV 170

Query:   117 ESFSGVYRKLTGKDVVFDYP 136
             E+FSGVY+KLTGKDV F++P
Sbjct:   171 ETFSGVYKKLTGKDVNFEFP 190

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005815 "microtubule organizing center" evidence=IEA

GO:0030686 "90S preribosome" evidence=IBA

GO:0032040 "small-subunit processome" evidence=IBA

GO:0005515 "protein binding" evidence=IPI

GO:0005840 "ribosome" evidence=IDA

GO:0022627 "cytosolic small ribosomal subunit" evidence=NAS;IDA

GO:0006412 "translation" evidence=IC;NAS;TAS

GO:0006364 "rRNA processing" evidence=IMP

GO:0042274 "ribosomal small subunit biogenesis" evidence=IMP

GO:0005730 "nucleolus" evidence=IDA

GO:0003723 "RNA binding" evidence=NAS

GO:0005634 "nucleus" evidence=IDA

GO:0030529 "ribonucleoprotein complex" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9XET4	RS7_SECCE	No assigned EC number	0.8142	1.0	0.7291	N/A	no
Q9ZNS1	RS7_AVIMR	No assigned EC number	0.8201	0.9928	0.7315	N/A	no
Q10101	RS7_SCHPO	No assigned EC number	0.5683	0.9785	0.7025	yes	no
P62082	RS7_MOUSE	No assigned EC number	0.6071	0.9714	0.7010	yes	no
Q9VA91	RS7_DROME	No assigned EC number	0.5367	0.9428	0.6804	yes	no
P62084	RS7_DANRE	No assigned EC number	0.5857	0.9714	0.7010	yes	no
P62083	RS7_RAT	No assigned EC number	0.6071	0.9714	0.7010	yes	no
P62081	RS7_HUMAN	No assigned EC number	0.6071	0.9714	0.7010	yes	no
Q9C514	RS71_ARATH	No assigned EC number	0.8214	1.0	0.7329	yes	no
Q54I41	RS7_DICDI	No assigned EC number	0.5289	0.9642	0.6994	yes	no
Q23312	RS7_CAEEL	No assigned EC number	0.5474	0.9428	0.6804	yes	no
P48164	RS7B_YEAST	No assigned EC number	0.5579	0.9714	0.7157	yes	no
P33514	RS7_ANOGA	No assigned EC number	0.5661	0.9428	0.6875	yes	no
Q9XH45	RS7_BRAOL	No assigned EC number	0.7985	0.9928	0.7277	N/A	no
A6H769	RS7_BOVIN	No assigned EC number	0.6071	0.9714	0.7010	yes	no
Q949H0	RS7_HORVU	No assigned EC number	0.8071	0.9928	0.7277	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	140
pfam01251	189	pfam01251, Ribosomal_S7e, Ribosomal protein S7e	2e-80
PTZ00389	184	PTZ00389, PTZ00389, 40S ribosomal protein S7; Prov	2e-54

>gnl|CDD|216389 pfam01251, Ribosomal_S7e, Ribosomal protein S7e

 Score =  234 bits (600), Expect = 2e-80
 Identities = 97/143 (67%), Positives = 119/143 (83%), Gaps = 3/143 (2%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAV 60
           ++V G +KA+V++VP    KAYRKI  RLVRELEKKFSGK VV +A RRI+  PK+ S  
Sbjct: 47  IEVGGGKKAVVIFVPVPQLKAYRKIQQRLVRELEKKFSGKHVVFVAQRRILPKPKRKSRY 106

Query: 61  Q---RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLE 117
           Q   RPRSRTLTAVHDA+LED+VYPAEIVGKR+RYRLDGSK+IK+FLD K++ N E+KL+
Sbjct: 107 QKQKRPRSRTLTAVHDAILEDLVYPAEIVGKRIRYRLDGSKLIKVFLDSKDQTNVEHKLD 166

Query: 118 SFSGVYRKLTGKDVVFDYPITDA 140
           SFS VY+KLTGKDVVF++P T+A
Sbjct: 167 SFSAVYKKLTGKDVVFEFPETNA 189

Length = 189

>gnl|CDD|185592 PTZ00389, PTZ00389, 40S ribosomal protein S7; Provisional

 Score =  168 bits (428), Expect = 2e-54
 Identities = 80/136 (58%), Positives = 107/136 (78%), Gaps = 2/136 (1%)

Query: 5   GNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQ-RP 63
             +KA+VV+VPYR+   YRKI  +L+ ELEKK   K VV++A R I++ P K   ++ RP
Sbjct: 50  DKKKAVVVFVPYRMLMIYRKIQRKLIPELEKKL-KKHVVIVAQRTILKKPVKNYKLKTRP 108

Query: 64  RSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVY 123
           RSRTLTAVH+A+LED+VYP+EIVGKR R R+DGSK++K+FLDPK+R N E KL++FS VY
Sbjct: 109 RSRTLTAVHEAILEDLVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRKNVEEKLDAFSAVY 168

Query: 124 RKLTGKDVVFDYPITD 139
           +KLTG+DVVF++P   
Sbjct: 169 KKLTGRDVVFEFPWDP 184

Length = 184

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF01251	189	Ribosomal_S7e: Ribosomal protein S7e; InterPro: IP	100.0
KOG3320	192	consensus 40S ribosomal protein S7 [Translation, r	100.0
PTZ00389	184	40S ribosomal protein S7; Provisional	100.0
PRK06418	166	transcription elongation factor NusA-like protein;	99.71
TIGR01618	220	phage_P_loop phage nucleotide-binding protein. Thi	81.9

>PF01251 Ribosomal_S7e: Ribosomal protein S7e; InterPro: IPR000554 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=3.5e-78  Score=484.20  Aligned_cols=139  Identities=64%  Similarity=1.026  Sum_probs=119.0

Q ss_pred             CeecCCeeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCC----CcccccCCcchhHHHHHhh
Q 032473            1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKG----SAVQRPRSRTLTAVHDAML   76 (140)
Q Consensus         1 i~v~~~kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k----~~q~rPRsRTLTaVhdaiL   76 (140)
                      ||||+|+||||||||||||++|||||.||++||||||||+||+|||||||||+|+++    .+|+|||||||||||||||
T Consensus        47 i~v~~~kKAivIfVP~~~lk~f~KIq~rLv~ELEKKfsgk~Vv~iAqRrIl~kp~r~~~~~~~qkrPRSRTLTaVhdaIL  126 (189)
T PF01251_consen   47 IEVGGGKKAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVVFIAQRRILPKPTRKSRQKQKQKRPRSRTLTAVHDAIL  126 (189)
T ss_dssp             EEECTCEEEEEEEE-CCCCHHHHHHCHHHHHHHHHCTTTCEEEEEE------SS-SSS---TTS---CCCSHHHHHHHHH
T ss_pred             EEECCCcEEEEEEEcHHHHHHHHHHHHHHHHHHHhhcCCCeEEEeccceEcCCCCcCccccccccCcCCcchHHHHHHHH
Confidence            689999999999999999999999999999999999999999999999999999887    4799999999999999999


Q ss_pred             hcccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032473           77 EDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD  139 (140)
Q Consensus        77 eDLV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~  139 (140)
                      ||||||+|||||||||++|||+++|||||++|||++|||+|||++|||+||||||+||||+++
T Consensus       127 eDLV~PseIVGKRir~rlDGskl~KV~LD~k~~~~ve~Kl~tfs~VYkkLTgK~v~FeFp~~~  189 (189)
T PF01251_consen  127 EDLVYPSEIVGKRIRVRLDGSKLIKVHLDKKDQNNVEHKLDTFSAVYKKLTGKDVVFEFPEQE  189 (189)
T ss_dssp             HHHTTTS-ECEEEEEE-TTS-EEEEEEEECCCCHHHHCCHHHHHHHHHHHCS-EEEEEEE---
T ss_pred             HhhccHHHhheeeEEEecCCCEEEEEEEChHHcccHHHHHHHHHHHHHHHcCCceEEEcCCCC
Confidence            999999999999999999999999999999999999999999999999999999999999863

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic ribosomal proteins can be grouped on the basis of sequence similarities []. One of these families consists of Xenopus S8, and mammalian, insect and yeast S7. These proteins have about 200 amino acids.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2XZN_3 2XZM_3 3U5G_H 3U5C_H.

>KOG3320 consensus 40S ribosomal protein S7 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=4.3e-74  Score=459.05  Aligned_cols=139  Identities=63%  Similarity=1.000  Sum_probs=136.7

Q ss_pred             CeecCCeeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCCc-ccccCCcchhHHHHHhhhcc
Q 032473            1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA-VQRPRSRTLTAVHDAMLEDV   79 (140)
Q Consensus         1 i~v~~~kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~~-q~rPRsRTLTaVhdaiLeDL   79 (140)
                      ||||||+||||||||+|+|++|||||.+|++||||||||+||+|||+|||||+|++++. |||||||||||||||||||+
T Consensus        52 iev~Gg~Kaivi~VP~p~lk~fqki~~~LvreleKKF~gk~Vifia~Rrilpkp~rks~~qKRprsrtltaVhdaiLed~  131 (192)
T KOG3320|consen   52 IEVGGGRKAIVIFVPVPQLKAFQKIQVRLVRELEKKFSGKHVIFIAQRRILPKPTRKSRTQKRPRSRTLTAVHDAILEDL  131 (192)
T ss_pred             EEecCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhcCCceEEEEEeeeeccCCCCCcccccCCccchHHHHHHHHHHhc
Confidence            68999999999999999999999999999999999999999999999999999999997 89999999999999999999


Q ss_pred             cccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032473           80 VYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD  139 (140)
Q Consensus        80 V~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~  139 (140)
                      |||+|||||||||++||++++|||||++|+||+|||+|+|++||++||||||+||||+.+
T Consensus       132 vfP~eIvGkR~rv~ldg~ki~kV~LD~~~~n~~e~K~e~f~~vy~kLtGKdv~fEfp~~~  191 (192)
T KOG3320|consen  132 VFPAEIVGKRTRVKLDGSKLVKVHLDKKQQNNVEHKVETFSAVYKKLTGKDVVFEFPEFT  191 (192)
T ss_pred             cchhhhcceeEEEEecCcEEEEEEechhhccchHHhHHHHHHHHHHhcCCceEEecCccc
Confidence            999999999999999999999999999999999999999999999999999999999865

>PTZ00389 40S ribosomal protein S7; Provisional

Probab=100.00  E-value=6.3e-73  Score=452.37  Aligned_cols=138  Identities=59%  Similarity=0.993  Sum_probs=134.5

Q ss_pred             CeecCC-eeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCCc-ccccCCcchhHHHHHhhhc
Q 032473            1 MDVSGN-RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSA-VQRPRSRTLTAVHDAMLED   78 (140)
Q Consensus         1 i~v~~~-kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~~-q~rPRsRTLTaVhdaiLeD   78 (140)
                      |||++| |||||||||||||++|||||.||++|||||| |+||+|||||||||+|+++++ |+|||||||||||||||||
T Consensus        45 i~v~~~~kkaivIfVP~~~lk~~~kiq~rLv~ELEKK~-g~~Vv~ia~RrIl~kp~r~~~~q~rPrSRTLTaVhdaiLeD  123 (184)
T PTZ00389         45 VTVGKDKKKAVVVFVPYRMLMIYRKIQRKLIPELEKKL-KKHVVIVAQRTILKKPVKNYKLKTRPRSRTLTAVHEAILED  123 (184)
T ss_pred             EEecCCCcEEEEEEecHHHHHHHHHHHHHHHHHHHHHh-CCeEEEEEEEEEcCCCCcCccccCCCCccchHHHHHHHHHH
Confidence            588777 9999999999999999999999999999999 999999999999999999886 9999999999999999999


Q ss_pred             ccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032473           79 VVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD  139 (140)
Q Consensus        79 LV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~  139 (140)
                      ||||+|||||||||++|||+++||+||++|++++|||+|+|++||++|||+||+||||+++
T Consensus       124 LvyPaeIvGkRir~~~DGsk~~KV~Ld~~d~~~ve~Kletf~~VykkLTgkdV~fefp~~~  184 (184)
T PTZ00389        124 LVYPSEIVGKRTRVRVDGSKLLKVFLDPKDRKNVEEKLDAFSAVYKKLTGRDVVFEFPWDP  184 (184)
T ss_pred             hccchheeeeEEEEecCCcEEEEEEeCHHHhcccchhHHHHHHHHHHHhCCCeEEEecCCC
Confidence            9999999999999999999999999999999999999999999999999999999999864

>PRK06418 transcription elongation factor NusA-like protein; Validated

Probab=99.71  E-value=1.4e-17  Score=131.71  Aligned_cols=64  Identities=20%  Similarity=0.320  Sum_probs=62.4

Q ss_pred             HHHhhhcccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEEC
Q 032473           72 HDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDY  135 (140)
Q Consensus        72 hdaiLeDLV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeF  135 (140)
                      -+.+|+||+||++|+|+|++++.||+..+||++|++|++++++|+++|++||++|||++|.|+|
T Consensus       102 ~~~fl~Nl~~PA~V~gV~i~~~~dG~~~~kV~Vd~~Dk~~l~~k~e~~~~v~~kltgk~v~~~f  165 (166)
T PRK06418        102 IKKLAVQLLSPARVLGVNTVWLPDGTVQYVIRVSRRDRRRLPAKPELLESILSKITGTEVKIRV  165 (166)
T ss_pred             HHHHHHhcCCCcEEEEEEEEEeCCCcEEEEEEECHHHhhcccccHHHHHHHHHHHHCCcEEEEe
Confidence            4678999999999999999999999999999999999999999999999999999999999999

>TIGR01618 phage_P_loop phage nucleotide-binding protein

Probab=81.90  E-value=11  Score=31.02  Aligned_cols=93  Identities=19%  Similarity=0.286  Sum_probs=59.3

Q ss_pred             hhHHHHHHHHHHHH---HHHhhhcCCCeEEEEeeecccCCCCCCCcccccCCcchhHHHHHhhhcccccceeeeeeEEEe
Q 032473           17 RLRKAYRKIHSRLV---RELEKKFSGKDVVLIATRRIVRPPKKGSAVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYR   93 (140)
Q Consensus        17 ~~lk~f~kiq~rLv---~ELEKKfsg~~Vv~iaqRrIl~kp~~k~~q~rPRsRTLTaVhdaiLeDLV~PseIVGKRir~~   93 (140)
                      +.+..|.+.+.+++   ..| +- .|++|+++|-+.+-..+ -  ..-.+.+|=....++...+.+.--+++|| |+.+.
T Consensus       110 ~~~~~yg~~~~~fl~~l~~L-~~-~g~nII~tAhe~~~~~~-d--e~G~~~~r~~P~i~~K~~n~l~G~~DvV~-rl~i~  183 (220)
T TIGR01618       110 PELQHYQKLDLWFLDLLTVL-KE-SNKNIYATAWELTNQSS-G--ESGQIYNRYQPDIREKVLNAFLGLTDVVG-RIVLN  183 (220)
T ss_pred             cccccHHHHHHHHHHHHHHH-Hh-CCCcEEEEEeecccccc-C--CCCCCcceechhhhhhHHHhhcccccEEE-EEEEc
Confidence            35677888876655   455 22 59999999998542111 1  11224455566777888888888999999 66655


Q ss_pred             e-CCceEEEEEeCccccccchhhhh
Q 032473           94 L-DGSKIIKIFLDPKERNNTEYKLE  117 (140)
Q Consensus        94 ~-DGskl~KV~LD~~~~~~ve~Kl~  117 (140)
                      . +|.+.+  .+++.+.....++||
T Consensus       184 ~~~g~R~~--~~~~~~~~~AKNrld  206 (220)
T TIGR01618       184 GETGERGF--ILDPSKGNYAKNRLD  206 (220)
T ss_pred             cCCCceEE--EECCCCCcccccccc
Confidence            4 466655  466666555555554

This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	140
3u5c_H	190	The Structure Of The Eukaryotic Ribosome At 3.0 A R		4e-37
3zey_4	202	High-resolution Cryo-electron Microscopy Structure		2e-23
2xzm_3	197	Crystal Structure Of The Eukaryotic 40s Ribosomal S		7e-17

>pdb|3U5C|H Chain H, The Structure Of The Eukaryotic Ribosome At 3.0 A Resolution. This Entry Contains Proteins Of The 40s Subunit, Ribosome A Length = 190

Iteration: 1
 Score =  149 bits (377), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 74/138 (53%), Positives = 99/138 (71%), Gaps = 2/138 (1%)
Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS-A 59
           +DV+G +KA+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S  
Sbjct: 49  IDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQ 108
Query: 60  VQ-RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLES 118
           VQ RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLES
Sbjct: 109 VQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLES 168
Query: 119 FSGVYRKLTGKDVVFDYP 136
           F  VY KLTGK +VF+ P
Sbjct: 169 FQAVYNKLTGKQIVFEIP 186

>pdb|3ZEY|4 Chain 4, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 202

Iteration: 1
 Score =  104 bits (259), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/128 (42%), Positives = 80/128 (62%), Gaps = 1/128 (0%)
Query: 9   AIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGSAVQR-PRSRT 67
           A+++  P R     RKI   L  ELEK+F G  VVL+A R+I + P     +Q+  RSRT
Sbjct: 63  AMIILYPLRFIMLVRKIQRTLTAELEKRFPGNIVVLVAQRKITKRPNDVYKLQQVQRSRT 122
Query: 68  LTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLT 127
             AV + +L D++YP ++VG+R RYR DGSK++K+FLD ++R   E +L   + VY+ LT
Sbjct: 123 SVAVFENILNDLIYPCDVVGRRWRYRTDGSKLMKVFLDARDRKRVESRLPLLAHVYKLLT 182
Query: 128 GKDVVFDY 135
            + V F +
Sbjct: 183 HRTVTFGF 190

>pdb|2XZM|3 Chain 3, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 197

Iteration: 1
 Score = 82.4 bits (202), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 49/134 (36%), Positives = 87/134 (64%), Gaps = 10/134 (7%)
Query: 7   RKAIVVYVPYRLRKAYRKIHS---RLVRELEKKFSGKDVVLIATRRIVRPP--KKGSAVQ 61
           + A+++YV ++   +YR + S   +L+ ELEKK   K +V    +R +     K+  + Q
Sbjct: 58  KSAVLIYVHFQ---SYRVLLSAARKLIIELEKKL--KQIVFFTAQRKIESKWVKEHKSQQ 112
Query: 62  RPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSG 121
           RPRSR LT V+DA+L+D++ P+ ++GKR+R RLDG+   +I LD  +R+  E KL++ + 
Sbjct: 113 RPRSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITH 172
Query: 122 VYRKLTGKDVVFDY 135
           +Y+ +T ++V F++
Sbjct: 173 IYKTVTTREVTFEF 186

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	140
3u5c_H	190	RP30, RP40, 40S ribosomal protein S7-A; translatio	3e-63
2xzm_3	197	RPS7E, 40S ribosomal protein RPS7E; ribosome, tran	2e-58

>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H Length = 190

 Score =  190 bits (485), Expect = 3e-63
 Identities = 72/140 (51%), Positives = 98/140 (70%), Gaps = 2/140 (1%)

Query: 1   MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS-- 58
           +DV+G +KA+ ++VP      + K+ ++L RELEKKF  + V+ +A RRI+  P + S  
Sbjct: 49  IDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQ 108

Query: 59  AVQRPRSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLES 118
             +RPRSRTLTAVHD +LED+V+P EIVGKRVRY + G+KI K+ LD K+    +YKLES
Sbjct: 109 VQKRPRSRTLTAVHDKILEDLVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLES 168

Query: 119 FSGVYRKLTGKDVVFDYPIT 138
           F  VY KLTGK +VF+ P  
Sbjct: 169 FQAVYNKLTGKQIVFEIPSE 188

>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3 Length = 197

 Score =  178 bits (453), Expect = 2e-58
 Identities = 47/136 (34%), Positives = 84/136 (61%), Gaps = 2/136 (1%)

Query: 5   GNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIV-RPPKKGSAVQRP 63
             + A+++YV ++  +       +L+ ELEKK   + V   A R+I  +  K+  + QRP
Sbjct: 56  KAKSAVLIYVHFQSYRVLLSAARKLIIELEKKLK-QIVFFTAQRKIESKWVKEHKSQQRP 114

Query: 64  RSRTLTAVHDAMLEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVY 123
           RSR LT V+DA+L+D++ P+ ++GKR+R RLDG+   +I LD  +R+  E KL++ + +Y
Sbjct: 115 RSRCLTYVYDALLDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIY 174

Query: 124 RKLTGKDVVFDYPITD 139
           + +T ++V F++    
Sbjct: 175 KTVTTREVTFEFKEDK 190

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
3u5c_H	190	RP30, RP40, 40S ribosomal protein S7-A; translatio	100.0
2xzm_3	197	RPS7E, 40S ribosomal protein RPS7E; ribosome, tran	100.0

>3u5c_H RP30, RP40, 40S ribosomal protein S7-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_H

Probab=100.00  E-value=1.3e-79  Score=491.30  Aligned_cols=139  Identities=52%  Similarity=0.907  Sum_probs=134.5

Q ss_pred             CeecCCeeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCC--cccccCCcchhHHHHHhhhc
Q 032473            1 MDVSGNRKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS--AVQRPRSRTLTAVHDAMLED   78 (140)
Q Consensus         1 i~v~~~kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~--~q~rPRsRTLTaVhdaiLeD   78 (140)
                      ||||||+||||||||+|||++|||||.||++||||||||+||+|||||||||||++++  +|+|||||||||||||||||
T Consensus        49 iev~~~kKAivIfVP~p~lk~f~KIq~rLvrELEKKfsgkhVvfiAqRrIlpkp~r~~~~kqkRPRSRTLTaVhdaiLeD  128 (190)
T 3u5c_H           49 IDVAGGKKALAIFVPVPSLAGFHKVQTKLTRELEKKFQDRHVIFLAERRILPKPSRTSRQVQKRPRSRTLTAVHDKILED  128 (190)
T ss_dssp             EECTTSCEEEEEEECSSSHHHHHHHTHHHHHHHHHTTCSEEEEEEECCCCCCCCCSSSCCCSCCCGGGSHHHHHHHHHHH
T ss_pred             EEecCCcEEEEEEecHHHHHHHHHHHHHHHHHHHhccCCCEEEEEecceEcCCCccCCcccccCCCCCchhHHHHHHHhh
Confidence            5899999999999999999999999999999999999999999999999999998887  49999999999999999999


Q ss_pred             ccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032473           79 VVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD  139 (140)
Q Consensus        79 LV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~  139 (140)
                      ||||+|||||||||++|||+++|||||++||||+|||+|||++|||+||||||+||||+.+
T Consensus       129 Lv~P~eIVGKRir~rlDGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLTgkdv~FeFp~~~  189 (190)
T 3u5c_H          129 LVFPTEIVGKRVRYLVGGNKIQKVLLDSKDVQQIDYKLESFQAVYNKLTGKQIVFEIPSET  189 (190)
T ss_dssp             HSCSSCEEEEEEEECSSSCEEEEEEECSSSTHHHHTTHHHHHHHHHHHHSCEEEEECCC--
T ss_pred             cccchheeeeEEEEecCCCEEEEEEECHHHhcccchhhHHHHHHHHHhhCCcEEEEecCcc
Confidence            9999999999999999999999999999999999999999999999999999999999764

>2xzm_3 RPS7E, 40S ribosomal protein RPS7E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_3

Probab=100.00  E-value=2.6e-68  Score=428.20  Aligned_cols=138  Identities=35%  Similarity=0.607  Sum_probs=132.3

Q ss_pred             Ceec-CC---eeEEEEEeehhhHHHHHHHHHHHHHHHhhhcCCCeEEEEeeecccCCCCCCC-cccccCCcchhHHHHHh
Q 032473            1 MDVS-GN---RKAIVVYVPYRLRKAYRKIHSRLVRELEKKFSGKDVVLIATRRIVRPPKKGS-AVQRPRSRTLTAVHDAM   75 (140)
Q Consensus         1 i~v~-~~---kkaivIfVP~~~lk~f~kiq~rLv~ELEKKfsg~~Vv~iaqRrIl~kp~~k~-~q~rPRsRTLTaVhdai   75 (140)
                      |||| ||   +||||||||+|++++|||||.||++|||||| |+||+|||||||||+|+++. +|+||||||||||||||
T Consensus        48 iev~~~~~k~kkaivIfVP~~~lk~f~kiq~rLvrELEKKf-g~~Vv~ia~RrIl~kp~~~~~~q~rprsrTltaV~~ai  126 (197)
T 2xzm_3           48 FQINKTNKKAKSAVLIYVHFQSYRVLLSAARKLIIELEKKL-KQIVFFTAQRKIESKWVKEHKSQQRPRSRCLTYVYDAL  126 (197)
T ss_dssp             EEEECTTCCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHTT-SSEEEEEECCCCCCSSCCCCTTCCCCGGGSHHHHHHHH
T ss_pred             EEecCCCCccceEEEEEEccchhhHHHHHHHHHHHHHHHHh-CCcEEEEecccccCCCcccCccccCCCccchhhhHHHH
Confidence            5786 66   7799999999999999999999999999999 89999999999999997754 89999999999999999


Q ss_pred             hhcccccceeeeeeEEEeeCCceEEEEEeCccccccchhhhhhHHHHHhhhhCCcEEEECCCCC
Q 032473           76 LEDVVYPAEIVGKRVRYRLDGSKIIKIFLDPKERNNTEYKLESFSGVYRKLTGKDVVFDYPITD  139 (140)
Q Consensus        76 LeDLV~PseIVGKRir~~~DGskl~KV~LD~~~~~~ve~Kl~tfs~VYkkLtgkdv~FeFp~~~  139 (140)
                      |||||||+|||||||||++|||+++||+||++||+++|||+|+|++||++|||+||+||||+.+
T Consensus       127 LeDLv~PaeIvGkRir~~~DGs~~~KV~Ld~~d~~~ve~Kletf~~VykkLTGkdV~feFp~~~  190 (197)
T 2xzm_3          127 LDDLLLPSTLIGKRIRARLDGTSFYRIQLDQNDRDFLEEKLDAITHIYKTVTTREVTFEFKEDK  190 (197)
T ss_dssp             HHHHSTTSCCSEEEEEECSSSCEECCEEEESTTHHHHHHHHHHHHHHHHHHSCCBCCEEEECCC
T ss_pred             HHHhccchheeeeEEEEecCCCEEEEEEeCHHHhcccccchHHHHHHHHHHhCCCEEEEEcCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00