Citrus Sinensis ID: 032491

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
Protein Sequence
MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Secondary Structure (PSIPRED)
cHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEcccccEEEcccHHHHHHHHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccEEEEEccccEEEEcccHHHHHHHHHHHccHHHHHHHHccccc
Coil and Loop (DISEMBL)
MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKlqvhppeiivdhhiylppgpghhnahgpscsggvvvasrdgkivCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Flexible Loop (DISEMBL)
mmeaaskeVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Low Complexity Region (SEG)
MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLppgpghhnahgpSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Disordered region (IsUnstruct)
*****************SYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI**********
Disordered Region (DISOPRED)
*MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH**AHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ***
Disordered Region (DISEMBL)
*********LNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRK********
Disordered Region (DISPRO)
MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQV**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	139	2.2.26 [Sep-21-2011]
Q9MB46	230	V-type proton ATPase subu	N/A	no	1.0	0.604	1.0	9e-78
Q9SWE7	230	V-type proton ATPase subu	N/A	no	1.0	0.604	0.992	6e-77
O23948	237	V-type proton ATPase subu	N/A	no	0.992	0.582	0.734	6e-53
Q41396	229	V-type proton ATPase subu	N/A	no	0.992	0.602	0.719	1e-50
Q39258	230	V-type proton ATPase subu	yes	no	1.0	0.604	0.676	1e-48
Q40272	226	V-type proton ATPase subu	N/A	no	0.964	0.592	0.688	3e-45
P0CAN7	237	V-type proton ATPase subu	no	no	1.0	0.586	0.627	3e-45
Q9C9Z8	235	V-type proton ATPase subu	no	no	0.964	0.570	0.610	2e-41
O00780	233	V-type proton ATPase subu	yes	no	0.942	0.562	0.345	5e-20
P31402	226	V-type proton ATPase subu	N/A	no	0.877	0.539	0.360	2e-14

>sp|Q9MB46|VATE_CITUN V-type proton ATPase subunit E OS=Citrus unshiu GN=VATE PE=2 SV=1

 Score =  288 bits (736), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE
Sbjct: 92  MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV
Sbjct: 152 EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIRKQLVSQVAA
Sbjct: 212 VFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.
Citrus unshiu (taxid: 55188)

>sp|Q9SWE7|VATE_CITLI V-type proton ATPase subunit E OS=Citrus limon GN=VATE PE=2 SV=1

 Score =  285 bits (729), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           MMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE
Sbjct: 92  MMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV
Sbjct: 152 EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIRKQLVSQVAA
Sbjct: 212 VFRKKLPEIRKQLVSQVAA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Citrus limon (taxid: 2708)

>sp|O23948|VATE_GOSHI V-type proton ATPase subunit E OS=Gossypium hirsutum GN=VATE PE=2 SV=1

 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 108/147 (73%), Positives = 119/147 (80%), Gaps = 9/147 (6%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M E+ASK+ LNVS DH+ YK+LLK LIVQSL+RLKEP VLLRCRK+D HLVESVL+SAKE
Sbjct: 92  MKESASKDFLNVSHDHHVYKRLLKDLIVQSLVRLKEPGVLLRCRKEDLHLVESVLDSAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHH--------NAHGPSCSGGVVVASRDGKIVCEN 112
           EYA K+ VHPPEIIVD  ++LPPGP HH         AHGP CSGGVV+ASRDGKIV EN
Sbjct: 152 EYASKVNVHPPEIIVD-DVHLPPGPSHHHGFFHHHAEAHGPFCSGGVVIASRDGKIVFEN 210

Query: 113 TLDARLDVVFRKKLPEIRKQLVSQVAA 139
           TLDARLDV F KKLPEIRK L  QVAA
Sbjct: 211 TLDARLDVAFNKKLPEIRKWLFGQVAA 237

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Gossypium hirsutum (taxid: 3635)

>sp|Q41396|VATE_SPIOL V-type proton ATPase subunit E OS=Spinacia oleracea GN=VATE PE=2 SV=1

 Score =  198 bits (503), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 100/139 (71%), Positives = 114/139 (82%), Gaps = 1/139 (0%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M E A+KE+L VS DH+ YK+LLK L+VQSLLRL+EP VLLRCR+DD HLVE VL SAKE
Sbjct: 92  MKEEAAKELLRVSGDHHHYKRLLKELVVQSLLRLREPGVLLRCREDDVHLVEHVLNSAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA+K +VH PEIIVD  I+LP GP HH  HG  CSGGVV+ASRDGKIV ENTLDARL+V
Sbjct: 152 EYAEKAEVHTPEIIVD-SIHLPAGPSHHKEHGLHCSGGVVLASRDGKIVFENTLDARLEV 210

Query: 121 VFRKKLPEIRKQLVSQVAA 139
            FRKKLP+IRKQL +  AA
Sbjct: 211 AFRKKLPQIRKQLFAVAAA 229

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Spinacia oleracea (taxid: 3562)

>sp|Q39258|VATE1_ARATH V-type proton ATPase subunit E1 OS=Arabidopsis thaliana GN=VHA-E1 PE=1 SV=2

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 94/139 (67%), Positives = 111/139 (79%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKE
Sbjct: 92  MKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA K +VH PE+ VD  I+LPP P  ++ HG  CSGGVV+ASRDGKIVCENTLDARLDV
Sbjct: 152 EYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
            FR KLP IRK L  QV A
Sbjct: 212 AFRMKLPVIRKSLFGQVTA 230

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. Required for Golgi organization and vacuole function in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

>sp|Q40272|VATE_MESCR V-type proton ATPase subunit E OS=Mesembryanthemum crystallinum GN=VATE PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 109/135 (80%), Gaps = 1/135 (0%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M EAASKE+L VS DH+ Y+ LLK LIVQSLLRLKEPAVLLRCR++D H V  VL SA+E
Sbjct: 92  MKEAASKELLLVSGDHHQYRNLLKELIVQSLLRLKEPAVLLRCREEDKHHVHRVLHSARE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EY +K  V  PE+IVD  I+LPP P  +++H  SCSGGVV+ASRDGKIV ENTLDARL+V
Sbjct: 152 EYGEKACVSHPEVIVD-DIHLPPAPTSYDSHELSCSGGVVMASRDGKIVFENTLDARLEV 210

Query: 121 VFRKKLPEIRKQLVS 135
            FRKKLP+IRKQL +
Sbjct: 211 AFRKKLPQIRKQLFA 225

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Mesembryanthemum crystallinum (taxid: 3544)

>sp|P0CAN7|VATE3_ARATH V-type proton ATPase subunit E3 OS=Arabidopsis thaliana GN=VHA-E3 PE=2 SV=1

 Score =  179 bits (455), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 109/145 (75%), Gaps = 6/145 (4%)

Query: 1   MMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV 54
           M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+
Sbjct: 92  MKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESM 151

Query: 55  LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTL 114
           L+ A EEY +K +VH PEIIVD  I+LPP P   + H  SC+GGVV+ASRDGKIVCENTL
Sbjct: 152 LDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTL 211

Query: 115 DARLDVVFRKKLPEIRKQLVSQVAA 139
           DARL+V FR KLPEIRK L  +V A
Sbjct: 212 DARLEVAFRNKLPEIRKSLFGKVGA 236

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C9Z8|VATE2_ARATH V-type proton ATPase subunit E2 OS=Arabidopsis thaliana GN=VHA-E2 PE=2 SV=1

 Score =  167 bits (423), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 83/136 (61%), Positives = 109/136 (80%), Gaps = 2/136 (1%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK 
Sbjct: 92  MKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKR 151

Query: 61  EYAQKLQVHPPEIIVDHHIY--LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARL 118
           +YA+K +V  P+I +D  ++   PP P   ++H P CSGGVV+AS+DGKIVCENTLDARL
Sbjct: 152 QYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARL 211

Query: 119 DVVFRKKLPEIRKQLV 134
           DV FR+KLP+IR +LV
Sbjct: 212 DVAFRQKLPQIRTRLV 227

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Arabidopsis thaliana (taxid: 3702)

>sp|O00780|VATE_DICDI V-type proton ATPase subunit E OS=Dictyostelium discoideum GN=vatE PE=1 SV=1

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 46/133 (34%), Positives = 82/133 (61%), Gaps = 2/133 (1%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           +++ A K++  +S D + Y+ +LK LI Q  ++L E  + +  RK+D  L+E     A  
Sbjct: 92  VIKEAQKKLATISDDKDKYQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAA 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           +Y + +     ++ VD   +LP GP   + +GP+C GGV++++ +G+I+C+NTLD+RL++
Sbjct: 152 QYKKNVG-KSIDVSVDKERFLPQGP-KSDYNGPTCCGGVILSALEGRIICKNTLDSRLEI 209

Query: 121 VFRKKLPEIRKQL 133
            F +  P IR QL
Sbjct: 210 CFDQLTPVIRTQL 222

Subunit of the peripheral V1 complex of vacuolar ATPase essential for assembly or catalytic function. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.

Dictyostelium discoideum (taxid: 44689)

>sp|P31402|VATE_MANSE V-type proton ATPase subunit E OS=Manduca sexta GN=VHA26 PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 48/133 (36%), Positives = 79/133 (59%), Gaps = 11/133 (8%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           +++ A K +  V +D   Y  LL  LIVQ+L +L EP V LR R+ D  LVES+L  A++
Sbjct: 94  VLDEARKRLAEVPKDIKLYSDLLVTLIVQALFQLVEPTVTLRVRQADKALVESLLGRAQQ 153

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           +Y  K++     + +D+  +LPP          +C G  ++A++ G+I   NTL++RL++
Sbjct: 154 DYKAKIK-KDVVLKIDNENFLPPD---------TCGGIELIAAK-GRIKISNTLESRLEL 202

Query: 121 VFRKKLPEIRKQL 133
           + ++ LPEIR  L
Sbjct: 203 IAQQLLPEIRNAL 215

The vacuolar ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells. This subunit is essential for its assembly or catalytic function. V-ATPase is responsible for energizing electrophoretic K(+)/2H(+) antiport by generating a transmembrane voltage of more than 200mV.

Manduca sexta (taxid: 7130)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
12585474	230	RecName: Full=V-type proton ATPase subun	1.0	0.604	1.0	7e-76
12585492	230	RecName: Full=V-type proton ATPase subun	1.0	0.604	0.992	4e-75
255537687	230	vacuolar ATP synthase subunit E, putativ	1.0	0.604	0.820	7e-62
225426050	230	PREDICTED: V-type proton ATPase subunit	1.0	0.604	0.798	8e-59
118488420	229	unknown [Populus trichocarpa]	0.985	0.598	0.795	4e-57
224118820	229	predicted protein [Populus trichocarpa]	0.985	0.598	0.795	6e-57
115435358	231	Os01g0222500 [Oryza sativa Japonica Grou	1.0	0.601	0.741	5e-56
224123646	229	predicted protein [Populus trichocarpa]	0.978	0.593	0.786	3e-55
388495094	230	unknown [Lotus japonicus] gi|388510568|g	0.992	0.6	0.760	1e-54
242051543	230	hypothetical protein SORBIDRAFT_03g00136	1.0	0.604	0.748	2e-54

>gi|12585474|sp|Q9MB46.1|VATE_CITUN RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=Vacuolar proton pump subunit E gi|6729085|dbj|BAA89661.1| vacuolar H+-ATPase E subunit-1 [Citrus unshiu]

 Score =  288 bits (736), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 139/139 (100%), Positives = 139/139 (100%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE
Sbjct: 92  MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV
Sbjct: 152 EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIRKQLVSQVAA
Sbjct: 212 VFRKKLPEIRKQLVSQVAA 230

Source: Citrus unshiu

Species: Citrus unshiu

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|12585492|sp|Q9SWE7.1|VATE_CITLI RecName: Full=V-type proton ATPase subunit E; Short=V-ATPase subunit E; AltName: Full=ClVE-1; AltName: Full=Vacuolar proton pump subunit E gi|5733660|gb|AAD49706.1| vacuolar V-H+ATPase subunit E [Citrus limon]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 138/139 (99%), Positives = 138/139 (99%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           MMEAASKEVLNVSRDHNSYKKLLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE
Sbjct: 92  MMEAASKEVLNVSRDHNSYKKLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV
Sbjct: 152 EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIRKQLVSQVAA
Sbjct: 212 VFRKKLPEIRKQLVSQVAA 230

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537687|ref|XP_002509910.1| vacuolar ATP synthase subunit E, putative [Ricinus communis] gi|223549809|gb|EEF51297.1| vacuolar ATP synthase subunit E, putative [Ricinus communis]

 Score =  241 bits (615), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 114/139 (82%), Positives = 128/139 (92%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M EAA+K++LNVSRDH+ Y+KLLK LIVQSLLRLKEPAVLLRCRKDD HL+ESVL+SAKE
Sbjct: 92  MKEAATKDLLNVSRDHHVYRKLLKDLIVQSLLRLKEPAVLLRCRKDDLHLLESVLDSAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA+K+ VH PEIIVD+H++LPP P HHN HGP CSGGVV+ASRDGKIVCENTLDARLDV
Sbjct: 152 EYAEKVNVHAPEIIVDNHVFLPPAPSHHNVHGPYCSGGVVLASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIRK+L SQVAA
Sbjct: 212 VFRKKLPEIRKKLFSQVAA 230

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426050|ref|XP_002274995.1| PREDICTED: V-type proton ATPase subunit E [Vitis vinifera] gi|297742293|emb|CBI34442.3| unnamed protein product [Vitis vinifera]

 Score =  231 bits (589), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 111/139 (79%), Positives = 124/139 (89%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M EAASKE+L+VS DH+ YK+LL+ L+VQSLLRLKEPAVLLRCRKDD HLVES+L+SAK+
Sbjct: 92  MKEAASKELLHVSHDHHVYKRLLRDLVVQSLLRLKEPAVLLRCRKDDLHLVESILDSAKD 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA K  V+PPEIIVDH +YLPP P HH+AHGP CSGGVV+ASRDGKIVCENTLDARLDV
Sbjct: 152 EYAGKANVYPPEIIVDHQVYLPPAPSHHHAHGPFCSGGVVLASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIRK L  QVAA
Sbjct: 212 VFRKKLPEIRKWLFGQVAA 230

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488420|gb|ABK96025.1| unknown [Populus trichocarpa]

 Score =  225 bits (574), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 120/137 (87%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M + A K++LNVS+ H+ YK LLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVL SAKE
Sbjct: 92  MKDVAGKDLLNVSQHHHRYKHLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLNSAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA+K  V+PPE+IVDH +YLPP P HHNAHGP CSGGVV+ASRDGKIV EN+LDARLDV
Sbjct: 152 EYAEKANVYPPEVIVDHDVYLPPAPSHHNAHGPFCSGGVVLASRDGKIVFENSLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQV 137
           VFRKKLPEIRK LV QV
Sbjct: 212 VFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224118820|ref|XP_002331357.1| predicted protein [Populus trichocarpa] gi|222874395|gb|EEF11526.1| predicted protein [Populus trichocarpa]

 Score =  224 bits (572), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 109/137 (79%), Positives = 120/137 (87%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M + A K++LNVS+ H+ YK LLK LIVQSLLRLKEPAVLLRCRKDDHHLVESVL SAKE
Sbjct: 92  MKDVAGKDLLNVSQHHHRYKHLLKDLIVQSLLRLKEPAVLLRCRKDDHHLVESVLHSAKE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA+K  V+PPE+IVDH +YLPP P HHNAHGP CSGGVV+ASRDGKIV EN+LDARLDV
Sbjct: 152 EYAEKANVYPPEVIVDHDVYLPPAPSHHNAHGPFCSGGVVLASRDGKIVFENSLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQV 137
           VFRKKLPEIRK LV QV
Sbjct: 212 VFRKKLPEIRKLLVGQV 228

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115435358|ref|NP_001042437.1| Os01g0222500 [Oryza sativa Japonica Group] gi|56784060|dbj|BAD81297.1| putative vacuolar V-H+ATPase subunit E [Oryza sativa Japonica Group] gi|113531968|dbj|BAF04351.1| Os01g0222500 [Oryza sativa Japonica Group] gi|215704303|dbj|BAG93143.1| unnamed protein product [Oryza sativa Japonica Group] gi|218187773|gb|EEC70200.1| hypothetical protein OsI_00945 [Oryza sativa Indica Group]

 Score =  221 bits (564), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 103/139 (74%), Positives = 121/139 (87%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M+EAA KE+L ++RDH+ YK LL+  IVQSLLRLKEPAV+LRCRK+D  LVESVLESAK 
Sbjct: 93  MLEAAGKELLYITRDHHVYKNLLRIFIVQSLLRLKEPAVILRCRKEDRELVESVLESAKN 152

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA K  ++PPEI+VD ++YLPP P H+ AHGPSCSGGVV+ASRDGKIVCENTLDARL+V
Sbjct: 153 EYADKANIYPPEIMVDRNVYLPPAPSHYEAHGPSCSGGVVLASRDGKIVCENTLDARLEV 212

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIR+ L+ QVAA
Sbjct: 213 VFRKKLPEIRRSLLGQVAA 231

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123646|ref|XP_002319131.1| predicted protein [Populus trichocarpa] gi|118481235|gb|ABK92567.1| unknown [Populus trichocarpa] gi|118486319|gb|ABK95001.1| unknown [Populus trichocarpa] gi|222857507|gb|EEE95054.1| predicted protein [Populus trichocarpa]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 107/136 (78%), Positives = 118/136 (86%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M + A KE+LNVS++ + YK LLK LIVQSLLRLKEPAVLLRCRKDDH+LVESVL SAK+
Sbjct: 92  MKDGAGKELLNVSQNQHHYKNLLKDLIVQSLLRLKEPAVLLRCRKDDHNLVESVLHSAKD 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA+K  V PPEIIVDH+IYLPP P HHNAHG SCSGGVV+ASRDGKIV EN+LDARLDV
Sbjct: 152 EYAEKANVFPPEIIVDHNIYLPPAPSHHNAHGLSCSGGVVLASRDGKIVFENSLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQ 136
            FRKKLPEIRK LV Q
Sbjct: 212 AFRKKLPEIRKLLVGQ 227

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388495094|gb|AFK35613.1| unknown [Lotus japonicus] gi|388510568|gb|AFK43350.1| unknown [Lotus japonicus]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/138 (76%), Positives = 116/138 (84%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M E+A+KE+LN  RDH+ YK LLK LIVQ LLRLKEPAVLLRCRKDD  LVE+VL+SA E
Sbjct: 92  MKESATKELLNAGRDHHVYKNLLKDLIVQGLLRLKEPAVLLRCRKDDLQLVEAVLDSAAE 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA K  V+ PEIIVDH+IYLP  P H+ +H P CSGGVV+ASRDGKIVCENTLDARLDV
Sbjct: 152 EYAGKANVNQPEIIVDHNIYLPSAPSHYESHEPYCSGGVVLASRDGKIVCENTLDARLDV 211

Query: 121 VFRKKLPEIRKQLVSQVA 138
           VFRKKLPEIRKQL  QVA
Sbjct: 212 VFRKKLPEIRKQLFGQVA 229

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242051543|ref|XP_002454917.1| hypothetical protein SORBIDRAFT_03g001360 [Sorghum bicolor] gi|241926892|gb|EES00037.1| hypothetical protein SORBIDRAFT_03g001360 [Sorghum bicolor]

 Score =  216 bits (551), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 104/139 (74%), Positives = 118/139 (84%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           M+E+A K++L +SRDH +YKKLLK LIVQSLLRLKEPAVLLRCRK+D  LV+SVLESA  
Sbjct: 92  MLESARKDLLCISRDHQTYKKLLKILIVQSLLRLKEPAVLLRCRKEDLELVDSVLESASN 151

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EYA K  V+PPEI+VD HI+LP  P H+ A GPSCSGGVV+ASRDGKIVCENTLDARL V
Sbjct: 152 EYADKANVYPPEIVVDRHIFLPSAPSHYQAPGPSCSGGVVLASRDGKIVCENTLDARLQV 211

Query: 121 VFRKKLPEIRKQLVSQVAA 139
           VFRKKLPEIR+ L  QVAA
Sbjct: 212 VFRKKLPEIRQSLFVQVAA 230

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	139
TAIR|locus:2136088	230	TUF "AT4G11150" [Arabidopsis t	1.0	0.604	0.640	8.7e-40
TAIR|locus:2024527	237	VHA-E3 "AT1G64200" [Arabidopsi	1.0	0.586	0.6	5.5e-38
TAIR|locus:2077893	235	VHA-E2 "vacuolar H+-ATPase sub	0.964	0.570	0.580	5.7e-36
UNIPROTKB|F1S5M0	226	ATP6V1E2 "Uncharacterized prot	0.877	0.539	0.360	9.8e-16
UNIPROTKB|Q32LB7	226	ATP6V1E2 "V-type proton ATPase	0.877	0.539	0.360	1.6e-15
RGD|1311680	226	Atp6v1e2 "ATPase, H transporti	0.877	0.539	0.353	5.4e-15
FB|FBgn0015324	226	Vha26 "Vacuolar H[+]-ATPase 26	0.870	0.535	0.350	1.1e-14
MGI|MGI:1922165	226	Atp6v1e2 "ATPase, H+ transport	0.856	0.526	0.369	1.1e-14
ZFIN|ZDB-GENE-041212-51	226	atp6v1e1a "ATPase, H+ transpor	0.877	0.539	0.308	1.1e-14
DICTYBASE|DDB_G0275701	233	vatE "vacuolar ATPase subunit	0.942	0.562	0.308	1.8e-14

TAIR|locus:2136088 TUF "AT4G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 89/139 (64%), Positives = 104/139 (74%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             M + A+K++LNVSRD  +YK+LLK LIVQ LLRLKEP+VLLRCR++D  LVE+VL+ AKE
Sbjct:    92 MKDQAAKDLLNVSRDEYAYKQLLKDLIVQCLLRLKEPSVLLRCREEDLGLVEAVLDDAKE 151

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
             EYA K +VH PE+ VD  I+L             CSGGVV+ASRDGKIVCENTLDARLDV
Sbjct:   152 EYAGKAKVHAPEVAVDTKIFLPPPPKSNDPHGLHCSGGVVLASRDGKIVCENTLDARLDV 211

Query:   121 VFRKKLPEIRKQLVSQVAA 139
              FR KLP IRK L  QV A
Sbjct:   212 AFRMKLPVIRKSLFGQVTA 230

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA;TAS

GO:0009409 "response to cold" evidence=IEP

GO:0005773 "vacuole" evidence=IDA

GO:0007030 "Golgi organization" evidence=RCA;IMP

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0009832 "plant-type cell wall biogenesis" evidence=IMP

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0000325 "plant-type vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IEP

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=RCA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:2024527 VHA-E3 "AT1G64200" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 87/145 (60%), Positives = 104/145 (71%)

Query:     1 MMEAASKEVLNVSRD------HNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV 54
             M E A+K++L VS+       H+ YK LLK LIVQ LLRLKEPAVLLRCR++D  +VES+
Sbjct:    92 MKEEAAKQLLKVSQHGFFNHHHHQYKHLLKDLIVQCLLRLKEPAVLLRCREEDLDIVESM 151

Query:    55 LESAKEEYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTL 114
             L+ A EEY +K +VH PEIIVD  I+L            SC+GGVV+ASRDGKIVCENTL
Sbjct:   152 LDDASEEYCKKAKVHAPEIIVDKDIFLPPAPSDDDPHALSCAGGVVLASRDGKIVCENTL 211

Query:   115 DARLDVVFRKKLPEIRKQLVSQVAA 139
             DARL+V FR KLPEIRK L  +V A
Sbjct:   212 DARLEVAFRNKLPEIRKSLFGKVGA 236

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

TAIR|locus:2077893 VHA-E2 "vacuolar H+-ATPase subunit E isoform 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 388 (141.6 bits), Expect = 5.7e-36, P = 5.7e-36
 Identities = 79/136 (58%), Positives = 103/136 (75%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             M ++A+K++L VS D N+YKKLLK LI++SLLRLKEP+VLLRCR+ D  +VESV+E AK 
Sbjct:    92 MKDSAAKDLLRVSNDKNNYKKLLKSLIIESLLRLKEPSVLLRCREMDKKVVESVIEDAKR 151

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXS--CSGGVVVASRDGKIVCENTLDARL 118
             +YA+K +V  P+I +D  ++L               CSGGVV+AS+DGKIVCENTLDARL
Sbjct:   152 QYAEKAKVGSPKITIDEKVFLPPPPNPKLPDSHDPHCSGGVVLASQDGKIVCENTLDARL 211

Query:   119 DVVFRKKLPEIRKQLV 134
             DV FR+KLP+IR +LV
Sbjct:   212 DVAFRQKLPQIRTRLV 227

GO:0005634 "nucleus" evidence=ISM

GO:0005753 "mitochondrial proton-transporting ATP synthase complex" evidence=ISS

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=ISS

GO:0015986 "ATP synthesis coupled proton transport" evidence=ISS

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

UNIPROTKB|F1S5M0 ATP6V1E2 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 48/133 (36%), Positives = 73/133 (54%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RCR  D  LV++ ++ A  
Sbjct:    94 LLNDAKLSLSRIVADQEVYQALLDKLVLQGLLRLLEPVVIIRCRPQDLFLVKAAVQKAIP 153

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
             +Y      H  E+ VD  + L              +GGV V S D +I   NTL++RLD+
Sbjct:   154 QYTTISHKHV-EVQVDQEVQLAT----------DAAGGVEVYSGDQRIKVSNTLESRLDL 202

Query:   121 VFRKKLPEIRKQL 133
             +F++K+PEIRK L
Sbjct:   203 LFQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

UNIPROTKB|Q32LB7 ATP6V1E2 "V-type proton ATPase subunit E 2" [Bos taurus (taxid:9913)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 48/133 (36%), Positives = 74/133 (55%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             ++  A   +  +  D   Y+ LL  L++Q LLRL EP V++RCR  DH LVE+ ++ A  
Sbjct:    94 LLNDAKLRLSRIVTDPEFYQGLLDKLVLQGLLRLLEPVVIVRCRPQDHFLVEAAVQRAIP 153

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
             +Y   +     E+ VD  + L              +GGV V S D +I+  NTL++RLD+
Sbjct:   154 QYTA-VSHRCVEVQVDKEVQLATDT----------TGGVEVYSSDQRIMVSNTLESRLDL 202

Query:   121 VFRKKLPEIRKQL 133
             + ++K+PEIRK L
Sbjct:   203 LSQQKMPEIRKAL 215

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA

GO:0001669 "acrosomal vesicle" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

RGD|1311680 Atp6v1e2 "ATPase, H transporting, lysosomal V1 subunit E2" [Rattus norvegicus (taxid:10116)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 47/133 (35%), Positives = 74/133 (55%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             +++ A   +  +  D   Y+ LL  L++Q+LLRL EP +++RCR+ D +LV+S L  A  
Sbjct:    94 LLKEAKMRLSRIVSDEEFYQDLLDKLVLQALLRLLEPVMIVRCREQDFYLVQSALLRAIP 153

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
             +Y    Q H  E+ +D   YL            + +GGV V S D KI   NTL++RL++
Sbjct:   154 QYMMLCQKHL-EVQIDQTEYLSS----------NAAGGVEVYSSDRKIKVSNTLESRLNL 202

Query:   121 VFRKKLPEIRKQL 133
                + +PEIR+ L
Sbjct:   203 AALQNMPEIRRTL 215

GO:0001669 "acrosomal vesicle" evidence=IEA;ISO

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IEA;ISO

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA;ISO

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

FB|FBgn0015324 Vha26 "Vacuolar H[+]-ATPase 26kD subunit" [Drosophila melanogaster (taxid:7227)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 47/134 (35%), Positives = 81/134 (60%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             +++ A K +  V+++ + Y+ +L  LIVQ L ++ EP V+LRCR+ D  LV +VL +A E
Sbjct:    94 VLDDARKRLGEVTKNQSEYETVLTKLIVQGLFQIMEPKVILRCREVDVPLVRNVLPAAVE 153

Query:    61 EYAQKLQVHPP-EIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLD 119
             +Y  K Q++   E+ +D   +L            +C GGV + + +G+I   NTL++RLD
Sbjct:   154 QY--KAQINQNVELFIDEKDFLSAD---------TC-GGVELLALNGRIKVPNTLESRLD 201

Query:   120 VVFRKKLPEIRKQL 133
             ++ ++ +PEIR  L
Sbjct:   202 LISQQLVPEIRNAL 215

GO:0000221 "vacuolar proton-transporting V-type ATPase, V1 domain" evidence=ISS;NAS

GO:0015992 "proton transport" evidence=NAS

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033181 "plasma membrane proton-transporting V-type ATPase complex" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

MGI|MGI:1922165 Atp6v1e2 "ATPase, H+ transporting, lysosomal V1 subunit E2" [Mus musculus (taxid:10090)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 48/130 (36%), Positives = 73/130 (56%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             +++ A   +  +  D   Y+ LL  L++Q+LLRL EP +++RCR  D HLVES +  A  
Sbjct:    94 LLKDAKMRLSRIVSDEEIYQDLLDKLVLQALLRLLEPVMIVRCRPQDLHLVESAVLRAIP 153

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
             +Y +  Q H  E+ VD   +L            + +GGV V S D KI   NTL++RL++
Sbjct:   154 QYMRLCQKHL-EVQVDQTEHLPS----------NAAGGVEVYSSDQKIKVSNTLESRLNL 202

Query:   121 VFRKKLPEIR 130
                +K+PEIR
Sbjct:   203 AAMQKMPEIR 212

GO:0001669 "acrosomal vesicle" evidence=IDA

GO:0006810 "transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0008553 "hydrogen-exporting ATPase activity, phosphorylative mechanism" evidence=IGI

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IGI

GO:0015992 "proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

ZFIN|ZDB-GENE-041212-51 atp6v1e1a "ATPase, H+ transporting, lysosomal , V1 subunit E1a" [Danio rerio (taxid:7955)]

 Score = 187 (70.9 bits), Expect = 1.1e-14, P = 1.1e-14
 Identities = 41/133 (30%), Positives = 79/133 (59%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             ++  A + +  +++D N Y+ LL+GL++Q   +L EP V++RCRK+D  +V++ ++    
Sbjct:    94 LLNDARERLATIAKDPNQYQTLLEGLVLQGFYQLLEPRVIIRCRKEDVAMVQTAVQKNIP 153

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
              Y + ++ +  E+ +D + +L              SGGV V + DG+I   NTL++RLD+
Sbjct:   154 IYKEAVKSNI-EVRIDENTFLSP----------DISGGVEVYNADGRIKASNTLESRLDL 202

Query:   121 VFRKKLPEIRKQL 133
             + ++ +P+IR  L
Sbjct:   203 LAQQMMPDIRVSL 215

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

DICTYBASE|DDB_G0275701 vatE "vacuolar ATPase subunit E" [Dictyostelium discoideum (taxid:44689)]

 Score = 185 (70.2 bits), Expect = 1.8e-14, P = 1.8e-14
 Identities = 41/133 (30%), Positives = 75/133 (56%)

Query:     1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
             +++ A K++  +S D + Y+ +LK LI Q  ++L E  + +  RK+D  L+E     A  
Sbjct:    92 VIKEAQKKLATISDDKDKYQTILKNLIYQGFVKLNENKIQVVGRKEDAGLLEKATTEAAA 151

Query:    61 EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
             +Y + +     ++ VD   +L            +C GGV++++ +G+I+C+NTLD+RL++
Sbjct:   152 QYKKNVG-KSIDVSVDKERFLPQGPKSDYNGP-TCCGGVILSALEGRIICKNTLDSRLEI 209

Query:   121 VFRKKLPEIRKQL 133
              F +  P IR QL
Sbjct:   210 CFDQLTPVIRTQL 222

GO:0045335 "phagocytic vesicle" evidence=IDA

GO:0046961 "proton-transporting ATPase activity, rotational mechanism" evidence=IEA

GO:0033178 "proton-transporting two-sector ATPase complex, catalytic domain" evidence=IEA

GO:0015991 "ATP hydrolysis coupled proton transport" evidence=IEA

GO:0015992 "proton transport" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q39258	VATE1_ARATH	No assigned EC number	0.6762	1.0	0.6043	yes	no
Q9SWE7	VATE_CITLI	No assigned EC number	0.9928	1.0	0.6043	N/A	no
Q41396	VATE_SPIOL	No assigned EC number	0.7194	0.9928	0.6026	N/A	no
Q9MB46	VATE_CITUN	No assigned EC number	1.0	1.0	0.6043	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	139
pfam01991	195	pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) su	8e-42
COG1390	194	COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase su	1e-08
PRK03963	198	PRK03963, PRK03963, V-type ATP synthase subunit E;	7e-04
PRK02292	188	PRK02292, PRK02292, V-type ATP synthase subunit E;	0.001

>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit

 Score =  137 bits (346), Expect = 8e-42
 Identities = 58/133 (43%), Positives = 80/133 (60%), Gaps = 15/133 (11%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           + E A + + N+S D + YK LLK LI Q+L++L EP V++R R++D  LV+S L+ AKE
Sbjct: 77  VFEEAKERLANLSEDKDEYKDLLKDLIKQALVKLGEPKVIVRSREEDEELVKSALDEAKE 136

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           EY +K      E I D+                 C GGVV+ + DGKI  +NTL+ARL+ 
Sbjct: 137 EYKEKTGKDTVETIGDN---------------IDCIGGVVLETEDGKIRVDNTLEARLER 181

Query: 121 VFRKKLPEIRKQL 133
           VF + LPEIRK L
Sbjct: 182 VFEQLLPEIRKAL 194

This family includes the vacuolar ATP synthase E subunit, as well as the archaebacterial ATP synthase E subunit. Length = 195

>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

 Score = 50.4 bits (121), Expect = 1e-08
 Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 27/131 (20%)

Query: 3   EAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEY 62
           EA  +++ N++ D     + L+ L++++L +L    +++   + D  LVE +L   K   
Sbjct: 88  EAVEEKLRNIASD--PEYESLQELLIEALEKLLGGELVVYLNEKDKALVEQILRELK--- 142

Query: 63  AQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVF 122
                                  G     G    GGVVV SRDGKI  +NT ++ L+ V 
Sbjct: 143 ----------------------IGVELGEGIDIIGGVVVESRDGKIRLDNTFESILERVL 180

Query: 123 RKKLPEIRKQL 133
            + LPEI ++L
Sbjct: 181 EELLPEISEKL 191

Length = 194

>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 30/118 (25%), Positives = 53/118 (44%), Gaps = 22/118 (18%)

Query: 2   MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEE 61
           +EA  + +  +  D   Y + LK L  +++  L E  V++R  +    L++S LE  ++E
Sbjct: 87  LEAVRERLAELPEDE--YFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDE 144

Query: 62  YAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLD 119
                     EI +   I                 GGV+V ++DG I  +NT +AR++
Sbjct: 145 LGDV------EIELGEPI--------------ETIGGVIVETKDGTIRVDNTFEARME 182

Length = 198

>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 18/42 (42%), Positives = 25/42 (59%)

Query: 95  CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ 136
           C GGVVV S DG++   NT D+ L+ V+   L EI  +L  +
Sbjct: 147 CLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE 188

Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	139
KOG1664	220	consensus Vacuolar H+-ATPase V1 sector, subunit E	100.0
PRK03963	198	V-type ATP synthase subunit E; Provisional	99.94
PRK02292	188	V-type ATP synthase subunit E; Provisional	99.9
PF01991	198	vATP-synt_E: ATP synthase (E/31 kDa) subunit; Inte	99.9
PRK01194	185	V-type ATP synthase subunit E; Provisional	99.83
COG1390	194	NtpE Archaeal/vacuolar-type H+-ATPase subunit E [E	99.81
PRK01558	198	V-type ATP synthase subunit E; Provisional	99.48
PRK01005	207	V-type ATP synthase subunit E; Provisional	99.17
TIGR03825	255	FliH_bacil flagellar assembly protein FliH. This b	98.91
PRK06937	204	type III secretion system protein; Reviewed	98.89
PRK06328	223	type III secretion system protein; Validated	98.86
PRK06669	281	fliH flagellar assembly protein H; Validated	98.78
PRK13386	236	fliH flagellar assembly protein H; Provisional	98.75
PF02108	128	FliH: Flagellar assembly protein FliH; InterPro: I	98.63
PRK05687	246	fliH flagellar assembly protein H; Validated	98.59
PRK09098	233	type III secretion system protein HrpB; Validated	98.51
COG1317	234	FliH Flagellar biosynthesis/type III secretory pat	98.49
PRK06032	199	fliH flagellar assembly protein H; Validated	98.17
TIGR02499	166	HrpE_YscL_not type III secretion apparatus protein	97.92
PF06635	207	NolV: Nodulation protein NolV; InterPro: IPR010586	96.77
PRK13436	179	F0F1 ATP synthase subunit delta; Provisional	96.75
PRK13430	271	F0F1 ATP synthase subunit delta; Provisional	96.68
PRK13434	184	F0F1 ATP synthase subunit delta; Provisional	96.62
PF06188	191	HrpE: HrpE/YscL/FliH and V-type ATPase subunit E;	96.59
TIGR03321	246	alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B.	96.41
PRK13428	445	F0F1 ATP synthase subunit delta; Provisional	96.05
PRK13441	180	F0F1 ATP synthase subunit delta; Provisional	95.04
COG0712	178	AtpH F0F1-type ATP synthase, delta subunit (mitoch	95.01
TIGR01145	172	ATP_synt_delta ATP synthase, F1 delta subunit. Thi	92.91
PRK13429	181	F0F1 ATP synthase subunit delta; Provisional	92.84
PRK05758	177	F0F1 ATP synthase subunit delta; Validated	92.45
CHL00119	184	atpD ATP synthase CF1 delta subunit; Validated	90.56
PF00213	172	OSCP: ATP synthase delta (OSCP) subunit; InterPro:	86.09
PRK08474	176	F0F1 ATP synthase subunit delta; Validated	83.27

>KOG1664 consensus Vacuolar H+-ATPase V1 sector, subunit E [Energy production and conversion]

Probab=100.00  E-value=2e-37  Score=237.41  Aligned_cols=128  Identities=49%  Similarity=0.783  Sum_probs=124.1

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      ||++|+++|...+.|++.|+.+|.+||.||+.+|.+|+++||||++|.++|+.++++|..+|....|. .+++.+|++.|
T Consensus        92 i~~ea~k~Ls~i~~~~~~Y~~lL~~LivQ~Ll~L~Ep~~Ivrcre~D~~lVe~~~~~a~~~y~~ka~~-~~e~~id~~~f  170 (220)
T KOG1664|consen   92 ILDEAKKRLSKVSKDTDRYKKLLKDLIVQGLLQLLEPEVIVRCREKDLKLVEAALPKAIEEYKEKAGV-GVEVQIDKKDF  170 (220)
T ss_pred             HHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHhCCCeeEEeehhhhhHHHHHHHHHHHHHHHHHhcC-Cceeeechhcc
Confidence            58999999999999999999999999999999999999999999999999999999999999999998 49999999999


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCCCCC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  139 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~~~~  139 (139)
                      ||+          +|+|||+++|.||+|+|+|||++||+.++++++|+||+.|||.++.
T Consensus       171 L~~----------~~~GGVvl~s~dgkI~v~NTLesRLeli~~q~lPeIR~aLFG~n~n  219 (220)
T KOG1664|consen  171 LPP----------DVAGGVVLYSRDGKIKVSNTLESRLELIAEQKLPEIRKALFGANPN  219 (220)
T ss_pred             CCc----------cccCCeEEEcCCCceEecCcHHHHHHHHHHHhhHHHHHHhcCCCCC
Confidence            987          9999999999999999999999999999999999999999999873

>PRK03963 V-type ATP synthase subunit E; Provisional

Probab=99.94  E-value=2.4e-26  Score=176.37  Aligned_cols=113  Identities=30%  Similarity=0.481  Sum_probs=100.2

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|++|+++|.+++.+  .|+++|.+||.+|+..+++++++|+|+|.|..++++.++++.+.    +|  ++++.+++   
T Consensus        86 v~~~a~~~l~~~~~~--~Y~~~l~~li~~a~~~l~~~~i~i~~~~~D~~~~~~~~~~~~~~----~~--~~~i~~~~---  154 (198)
T PRK03963         86 VLEAVRERLAELPED--EYFETLKALTKEAVEELGEDKVVVRSNERTLKLIDSRLEEIRDE----LG--DVEIELGE---  154 (198)
T ss_pred             HHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHhCCCcEEEEEccccHHHHHHHHHHHHHH----hC--CeEEEECC---
Confidence            588999999999765  89999999999999999999999999999999999988876543    33  35666652   


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  135 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg  135 (139)
                          |       .+|.|||||+|++|+|+|||||++||+.+++.++|+|++.|||
T Consensus       155 ----~-------~~~~GGvil~s~~g~i~~dnT~e~~l~~~~~~~~~~i~~~LF~  198 (198)
T PRK03963        155 ----P-------IETIGGVIVETKDGTIRVDNTFEARMERLESELRAKIAKALFG  198 (198)
T ss_pred             ----C-------CCccceEEEEeCCCCEEEeCcHHHHHHHHHHHhHHHHHHHhcC
Confidence                1       3889999999999999999999999999999999999999997

>PRK02292 V-type ATP synthase subunit E; Provisional

Probab=99.90  E-value=1.2e-23  Score=160.44  Aligned_cols=104  Identities=32%  Similarity=0.484  Sum_probs=89.7

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|++|+++|.+++++  .|+.+|.+||.++    .+++++|+|+|.|..+++.++.++    .   +   +++  .    
T Consensus        85 v~~~a~~kL~~~~~~--~y~~~l~~li~~~----~~~~~~i~~~~~D~~~~~~~~~~~----~---~---~~~--~----  142 (188)
T PRK02292         85 VRNQVEDEIASLDGD--KREELTKSLLDAA----DADGVRVYSRKDDEDLVKSLLSDY----D---G---LEY--A----  142 (188)
T ss_pred             HHHHHHHHHHhcchh--hHHHHHHHHHHhc----CCCCeEEEEccccHHHHHHHHHhc----c---c---Cee--C----
Confidence            589999999999754  8999999999999    578899999999999999887653    1   1   111  1    


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  136 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~  136 (139)
                        ++        .+|.|||||++++|+|+|||||++||+.++++++|+|+++|||.
T Consensus       143 --~~--------~~~~GGvil~~~~g~I~~dnT~~~rl~~~~~~~~~~i~~~LF~~  188 (188)
T PRK02292        143 --GN--------IDCLGGVVVESEDGRVRVNNTFDSILEDVWEDNLKEISDRLFGE  188 (188)
T ss_pred             --CC--------CCCCceEEEEecCCceEEeccHHHHHHHHHHHhhHHHHHHhcCC
Confidence              11        27899999999999999999999999999999999999999984

>PF01991 vATP-synt_E: ATP synthase (E/31 kDa) subunit; InterPro: IPR002842 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.90  E-value=5.1e-25  Score=167.50  Aligned_cols=122  Identities=34%  Similarity=0.506  Sum_probs=103.7

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|++++++|.+++++++.|+++|.+||.+++..+++++++|+|++.|.++++++++.+...|+...|...+....+. .+
T Consensus        77 v~~~~~~~L~~~~~~~~~Y~~~L~~li~~~~~~~~~~~~~v~~~~~D~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~  155 (198)
T PF01991_consen   77 VFEEVKEKLKSFSKDPDDYKKFLKKLIEEAAEKLGEGEVIVYVNKKDLELVKEILKRIKKELKSKAGKDSVEVSVDS-DY  155 (198)
T ss_dssp             HHHHHHHHHHCTTCCC-THHHHHHHHHHHHHHCCTTSCEEEEECCHHHHCCHCCHCCCCCCHCCCSSTTTEEEEE-T---
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcCCceEEecccchHHHHHHHHHHHHHHHHHHhCCCcceeecCc-cc
Confidence            47899999999998866899999999999999999999999999999999999887776677655554334444443 23


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhc
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  134 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LF  134 (139)
                      +           .+|.|||+++++||+|+|||||++||+.+++.+.|+|+++||
T Consensus       156 ~-----------~~~~GG~il~~~dg~i~vd~T~e~~l~~~~~~~~~~i~~~LF  198 (198)
T PF01991_consen  156 L-----------IDIIGGFILESEDGKIRVDNTFESRLERLKEEIRPEIAKILF  198 (198)
T ss_dssp             ------------BSSSSEEEEECSSSSCEEEEEHHHHHHHCHHHHHHHHHHHHC
T ss_pred             c-----------CCccceEEEEECCCCEEEECCHHHHHHHHHHHhHHHHHHHcC
Confidence            2           288999999999999999999999999999999999999999

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The V-ATPases (or V1V0-ATPase) and A-ATPases (or A1A0-ATPase) are each composed of two linked complexes: the V1 or A1 complex contains the catalytic core that hydrolyses/synthesizes ATP, and the V0 or A0 complex that forms the membrane-spanning pore. The V- and A-ATPases both contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, , ]. The V- and A-ATPases more closely resemble one another in subunit structure than they do the F-ATPases, although the function of A-ATPases is closer to that of F-ATPases. This entry represents subunit E from the V1 and A1 complexes of V- and A-ATPases, respectively. Subunit E appears to form a tight interaction with subunit G in the F0 complex, which together may act as stators to prevent certain subunits from rotating with the central rotary element, much in the same way as the F0 complex subunit B does in F-ATPases []. In addition to its key role in stator structure, subunit E appears to have a role in mediating interactions with putative regulatory subunits []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0033178 proton-transporting two-sector ATPase complex, catalytic domain; PDB: 3LG8_A 2KK7_A 4DT0_A 2DM9_A 2DMA_A 3V6I_A 3K5B_A 3J0J_L 2KZ9_A.

>PRK01194 V-type ATP synthase subunit E; Provisional

Probab=99.83  E-value=3.4e-20  Score=142.01  Aligned_cols=98  Identities=16%  Similarity=0.352  Sum_probs=83.7

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|+.|.++|.++++++ +|+++|++||.+|+.. .+++++|+|+++|.++++..                 +++     +
T Consensus        85 v~~~a~e~L~~l~~~~-~Y~~~L~~LI~~a~~~-l~~~~~v~~~~~D~~~i~~~-----------------~l~-----~  140 (185)
T PRK01194         85 YLDIAYEHLMNITKSK-EYDSILNKMIEVAIKT-LGEDCIIKVSESDKKKINNA-----------------KIK-----F  140 (185)
T ss_pred             HHHHHHHHHHcccCCc-hHHHHHHHHHHHHHHh-cCCCeEEEEcHHhHHHHHhC-----------------cee-----e
Confidence            5889999999998765 8999999999999999 56889999999999988752                 222     1


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  136 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~  136 (139)
                      ++          .+|.|||||+|.+|+|++||||++.+    ++++|+||..||..
T Consensus       141 ~~----------~~~~GGvil~s~dG~I~ld~~l~~~~----~~~~~~iR~~lf~~  182 (185)
T PRK01194        141 AD----------IDPYGGILAYSRDGKRELDLRLSSIF----ENILEDLKVYFYEN  182 (185)
T ss_pred             CC----------ccccccEEEEeCCCcEEehhhHHHHH----HHhHHHHHHHHHhh
Confidence            21          28999999999999999888888865    89999999999964

>COG1390 NtpE Archaeal/vacuolar-type H+-ATPase subunit E [Energy production and conversion]

Probab=99.81  E-value=2.3e-19  Score=138.49  Aligned_cols=109  Identities=33%  Similarity=0.534  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|+.+.++|.++.+++ +|.. |..|+.+++..+.+++++|++++.|..++..++.+..           +...+.    
T Consensus        86 ~~~~~~e~L~~i~~~~-~~~~-l~~ll~~~~~~~~~~~~iV~~~e~d~~~v~~~~~~~~-----------~~~~~~----  148 (194)
T COG1390          86 VFEAVEEKLRNIASDP-EYES-LQELLIEALEKLLGGELVVYLNEKDKALVEQILRELK-----------IGVELG----  148 (194)
T ss_pred             HHHHHHHHHHcCcCCc-chHH-HHHHHHHHHHhcCCCCeEEEeCcccHHHHHHHHhhcc-----------cchhcc----
Confidence            3788999999999886 5555 9999999999999999999999999999887766411           111121    


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  136 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~  136 (139)
                        +        .++|.|||+++++||++++||||++||+++++.+.|.|++.|||.
T Consensus       149 --~--------~~d~~GGvvv~~~dG~i~~dnt~~sil~~~~e~~~~~i~~~lf~~  194 (194)
T COG1390         149 --E--------GIDIIGGVVVESRDGKIRLDNTFESILERVLEELLPEISEKLFGV  194 (194)
T ss_pred             --c--------cCCCcceEEEEeCCCceeecCcHHHHHHHHHHHHHHHHHHHHcCC
Confidence              1        138999999999999999999999999999999999999999984

>PRK01558 V-type ATP synthase subunit E; Provisional

Probab=99.48  E-value=7.3e-13  Score=102.43  Aligned_cols=96  Identities=20%  Similarity=0.289  Sum_probs=77.8

Q ss_pred             ChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCC
Q 032491           15 DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPS   94 (139)
Q Consensus        15 ~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~   94 (139)
                      +++.|..++..|+....   .++++.|+.++.|...+.+.+..   .+++.++. .  +++..      +        .+
T Consensus       100 ~~e~~~~li~~ll~~~~---~~~~~~I~~~~~D~~~l~~~~~~---~~~~~l~~-g--i~i~~------~--------~~  156 (198)
T PRK01558        100 DSNFLRELIIRVVDSWV---KGDKLEIILNESDLSELESILRA---ALGNKLKK-G--IELKP------F--------KG  156 (198)
T ss_pred             CHHHHHHHHHHHHHHhc---CCCCeeEEECHHHHHHhHHHHHH---HHHHHhcC-C--eEEcc------c--------CC
Confidence            66789999999999864   56788999999999998877543   33444432 2  33431      1        38


Q ss_pred             ccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHh
Q 032491           95 CSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL  133 (139)
Q Consensus        95 ~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~L  133 (139)
                      |.|||+|.+.||.+.+||||+++++.+.+.+-|.++++|
T Consensus       157 ~~gG~iv~~~dg~i~id~T~ea~~~~l~~~L~~~~~~~l  195 (198)
T PRK01558        157 ISKGFKIQQKDGSLYYDFSAEAIADILFSYLNPRFKEVI  195 (198)
T ss_pred             cccceEEEEcCCCeEEeCcHHHHHHHHHHHhcHHHHHHH
Confidence            999999999999999999999999999999999999987

>PRK01005 V-type ATP synthase subunit E; Provisional

Probab=99.17  E-value=3.8e-10  Score=88.08  Aligned_cols=106  Identities=12%  Similarity=0.126  Sum_probs=69.3

Q ss_pred             HHHHHHHHHhh-ccChhhHHHHHHHHHHHHHHHhCCC--------cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCe
Q 032491            2 MEAASKEVLNV-SRDHNSYKKLLKGLIVQSLLRLKEP--------AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPE   72 (139)
Q Consensus         2 ~~~a~~~L~~~-~~~~~~Y~~~L~~LI~qa~~~l~e~--------~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~   72 (139)
                      |..+.++|-+- ..|    +++|..||..-+......        -+...++|++.+..  +...+.+...   .. .  
T Consensus        93 f~~a~~~lv~~~~~d----~~~l~~lI~~~v~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~---~~-g--  160 (207)
T PRK01005         93 FRESLGEWLEHVLTD----PEVSAKLIQALVQAIEAQGISGNLTAYIGKHVSARAVNEL--LGKEVTKKLK---EK-G--  160 (207)
T ss_pred             HHHHHHHHHHHHhcC----HHHHHHHHHHHHHHHhhcccccccchhhhhcCCHHHHHHH--HHHHHHHHHH---Hc-C--
Confidence            45555555443 333    467777777666655322        23345666665543  2222222222   11 2  


Q ss_pred             EEeccccCCCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCC
Q 032491           73 IIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQ  136 (139)
Q Consensus        73 i~vd~~~~L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~  136 (139)
                      +++..                 ..|||+|.+.||++++|||++++++.+++.++|.+|.+|||+
T Consensus       161 v~~~~-----------------~~gG~~v~~~dg~~~vd~t~d~i~~~~~~~l~~~~~~~LF~~  207 (207)
T PRK01005        161 VSVGS-----------------FVGGAQLKVEEKNWVLDLSSQTLLDLLTRYLQKDFREMIFQG  207 (207)
T ss_pred             eEEec-----------------cCCceEEEecCCeeEEeCcHHHHHHHHHHHhhHHHHHHhcCC
Confidence            34431                 159999999999999999999999999999999999999984

>TIGR03825 FliH_bacil flagellar assembly protein FliH

Probab=98.91  E-value=1.1e-08  Score=81.77  Aligned_cols=91  Identities=18%  Similarity=0.208  Sum_probs=72.0

Q ss_pred             HHHHHHHHHHHHHHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccce
Q 032491           20 KKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGG   98 (139)
Q Consensus        20 ~~~L~~LI~qa~~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GG   98 (139)
                      +..+..||.+++..+.+. .++|+|+|.|++.+....+.+...+...   ..+.|..|+  .             -..||
T Consensus       158 ~e~i~~lv~~al~~l~~~~~i~I~v~p~d~~~v~~~~~~l~~~~~~~---~~i~i~~D~--~-------------l~~Gg  219 (255)
T TIGR03825       158 KNAFQALVRQVLSEVREFDEVSIYVHPHWYERVAAQKDELQSILPAC---EHLAVYPDE--K-------------LPDGG  219 (255)
T ss_pred             HHHHHHHHHHHHHhccCCCcEEEEECHHHHHHHHHhHHHHHhhcCCC---CceEEEeCC--C-------------CCCCC
Confidence            346789999999999774 8999999999999998877665544322   235666664  2             34599


Q ss_pred             EEEEecCCcEEEcccHHHHHHHHHHhhhHHHH
Q 032491           99 VVVASRDGKIVCENTLDARLDVVFRKKLPEIR  130 (139)
Q Consensus        99 Vvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir  130 (139)
                      ++|.+.+|.  +|+|+++||+.+++.++-.+.
T Consensus       220 cvIEt~~G~--iDasldtqLe~l~~~l~~~l~  249 (255)
T TIGR03825       220 CYVETNFGR--IDASVDTQLEQLKEKLLEALK  249 (255)
T ss_pred             eEEEcCCce--EEeeHHHHHHHHHHHHHHHHh
Confidence            999999998  699999999999998887764

This bacillus clade of FliH proteins is not found by the Pfam FliH model pfam02108, but is closely related to the sequences identified by that model. Sequences identified by this model are observed in flagellar operons in an analogous position relative to other flagellar operon genes.

>PRK06937 type III secretion system protein; Reviewed

Probab=98.89  E-value=1.3e-08  Score=78.74  Aligned_cols=89  Identities=17%  Similarity=0.285  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccce
Q 032491           20 KKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGG   98 (139)
Q Consensus        20 ~~~L~~LI~qa~~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GG   98 (139)
                      ++++..++.+++..+.+. .++|+++|.|.+.+++.+.+....+.+   ...+.|..|+  .|             ..||
T Consensus       113 ~e~i~~lv~~al~~l~~~~~v~I~V~P~D~~~v~~~~~~~~~~~~~---~~~l~i~~D~--~L-------------~~Gg  174 (204)
T PRK06937        113 VERTLQVVREALALVSNQKQVVVRVNPDQAAAVREQIAKVLKDFPE---VGYLEVVADA--RL-------------DQGG  174 (204)
T ss_pred             HHHHHHHHHHHHHhcccCCeEEEEECHHHHHHHHHHHHHHHHhCCC---CccEEEEeCC--CC-------------CCCC
Confidence            578889999999999764 899999999999999887765554432   1135666664  33             3599


Q ss_pred             EEEEecCCcEEEcccHHHHHHHHHHhhhHH
Q 032491           99 VVVASRDGKIVCENTLDARLDVVFRKKLPE  128 (139)
Q Consensus        99 Vvv~s~dG~I~vdNTle~RL~~~~~~~lp~  128 (139)
                      ++|.+..|.  +|+|+++||+.+.+.+...
T Consensus       175 c~iET~~G~--vDasl~tql~~l~~al~~~  202 (204)
T PRK06937        175 CILETEVGI--IDASLDGQLEALEQAFHST  202 (204)
T ss_pred             eEEecCCce--EEccHHHHHHHHHHHHHHH
Confidence            999999998  6999999999888776543

>PRK06328 type III secretion system protein; Validated

Probab=98.86  E-value=2.5e-08  Score=78.58  Aligned_cols=92  Identities=17%  Similarity=0.256  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccce
Q 032491           20 KKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGG   98 (139)
Q Consensus        20 ~~~L~~LI~qa~~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GG   98 (139)
                      ++.+..++.+|+..+.+. .++|+|+|.|.+.|+...+++...+...   ..+.|..|+  .|+             .||
T Consensus       114 ~e~il~lV~~aL~~l~~~~~v~I~VnP~D~~~v~~~~~~l~~~~~~~---~~~~I~~D~--~L~-------------~Gg  175 (223)
T PRK06328        114 PETIVSIIANSLKELTQHKRIIIHVNPKDLAIVEKSRPELKKIVEYA---DSLIISPKA--DVT-------------PGG  175 (223)
T ss_pred             HHHHHHHHHHHHHhcccCCceEEEECHHHHHHHHHHHHHHHHhccCC---CceEEEeCC--CCC-------------CCC
Confidence            467779999999988654 8999999999999998777665544432   246777774  343             499


Q ss_pred             EEEEecCCcEEEcccHHHHHHHHHHhhhHHHHH
Q 032491           99 VVVASRDGKIVCENTLDARLDVVFRKKLPEIRK  131 (139)
Q Consensus        99 Vvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~  131 (139)
                      ++|.+..|.|  |.|+++||+.+.+.+.-.++.
T Consensus       176 CiIET~~G~V--Dasle~ql~~l~~al~~~l~~  206 (223)
T PRK06328        176 CIIETEAGII--NAQLDVQLAALEKAFSTILKH  206 (223)
T ss_pred             eEEEeCCceE--EecHHHHHHHHHHHHHHHHcc
Confidence            9999999985  999999998888776555543

>PRK06669 fliH flagellar assembly protein H; Validated

Probab=98.78  E-value=6.9e-08  Score=77.98  Aligned_cols=90  Identities=19%  Similarity=0.278  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHHHHHHHhCC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 032491           18 SYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS   96 (139)
Q Consensus        18 ~Y~~~L~~LI~qa~~~l~e-~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~   96 (139)
                      ..+.++..+|.+++..+.+ +.++|+++|.|+++++....++...+...   ..+.|..|+  .             -..
T Consensus       186 ~~~~~i~~li~~al~~l~~~~~i~I~V~p~d~~~l~~~~~~l~~~l~~~---~~i~I~~D~--~-------------l~~  247 (281)
T PRK06669        186 NSKEIALALVKELLKEVKDATDITIRVNPEDYEYVKEQKDELISLLDNE---EHLKIYEDD--A-------------ISK  247 (281)
T ss_pred             cCHHHHHHHHHHHHHHcCcCCcEEEEECHHHHHHHHHhHHHHHHhcCCC---CCeEEEECC--C-------------CCC
Confidence            3678889999999999876 48999999999999999888776554432   246666664  2             334


Q ss_pred             ceEEEEecCCcEEEcccHHHHHHHHHHhhhH
Q 032491           97 GGVVVASRDGKIVCENTLDARLDVVFRKKLP  127 (139)
Q Consensus        97 GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp  127 (139)
                      |||+|.+.+|.  +|+|+++||+++++.++.
T Consensus       248 GgcvIet~~G~--IDasi~tqLe~l~~~L~e  276 (281)
T PRK06669        248 GGCVIETDFGN--IDARIDTQLKQLKEKLLE  276 (281)
T ss_pred             CCeEEEcCCCe--eeccHHHHHHHHHHHHHh
Confidence            99999999998  699999999998887654

>PRK13386 fliH flagellar assembly protein H; Provisional

Probab=98.75  E-value=5.8e-08  Score=77.06  Aligned_cols=86  Identities=13%  Similarity=0.293  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHHhCC--CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccc
Q 032491           20 KKLLKGLIVQSLLRLKE--PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSG   97 (139)
Q Consensus        20 ~~~L~~LI~qa~~~l~e--~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~G   97 (139)
                      ++.+-.+|.+|+..+-.  ..|+|+|||.|.+.+++..++.         ...+++..|+  .|.             .|
T Consensus       144 p~~il~~v~eaL~~lp~~~~~v~I~vnP~D~~~l~~~~~e~---------~~~~~l~~D~--~l~-------------~G  199 (236)
T PRK13386        144 PQQILALVEETLAALPDDPEQLKVHLNPEEFGRLKDLAPEK---------VQAWGLVADP--SLS-------------AG  199 (236)
T ss_pred             HHHHHHHHHHHHHhccccCCCeEEEECHHHHHHHHHhhhcc---------ccCeEEEeCC--CcC-------------CC
Confidence            34577999999999843  5899999999999999776541         1146777774  332             49


Q ss_pred             eEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491           98 GVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  135 (139)
Q Consensus        98 GVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg  135 (139)
                      |++|.+.+|.|  |.|+++||+.+.+    .++..|.+
T Consensus       200 gC~Iet~~g~i--Da~ietRl~~~~~----~l~~~l~~  231 (236)
T PRK13386        200 ECRIVTDTSEA--DAGCEHRLDACMD----AVKEHLLT  231 (236)
T ss_pred             CEEEEeCCceE--eeCHHHHHHHHHH----HHHHhccc
Confidence            99999999985  9999999976655    44555544

>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE

Probab=98.63  E-value=2.5e-07  Score=65.43  Aligned_cols=77  Identities=25%  Similarity=0.406  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHH-HHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccc
Q 032491           20 KKLLKGLIVQSL-LRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSG   97 (139)
Q Consensus        20 ~~~L~~LI~qa~-~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~G   97 (139)
                      +..+..+|.+++ ..+... .++|+++|.|.+.++..+.+....+       .+++..|+  .|+             .|
T Consensus        49 ~~~i~~~i~~al~~~~~~~~~v~I~v~p~d~~~l~~~~~~~~~~~-------~~~l~~D~--~l~-------------~G  106 (128)
T PF02108_consen   49 PEAILNLIREALQELPRDEEKVTIRVHPDDYEALEELLEDELPEL-------GWELVADP--SLA-------------PG  106 (128)
T ss_pred             HHHHHHHHHHHHHHhhccCCCeEEEECHHHHHHHHHHHHHHHhhc-------CCEEEecC--CCC-------------CC
Confidence            467778899999 555444 8999999999999998877432211       34677774  333             49


Q ss_pred             eEEEEecCCcEEEcccHHHHHHH
Q 032491           98 GVVVASRDGKIVCENTLDARLDV  120 (139)
Q Consensus        98 GVvv~s~dG~I~vdNTle~RL~~  120 (139)
                      |+++.+++|.|  |.|+++||+.
T Consensus       107 ~c~iet~~g~i--D~~i~~ql~~  127 (128)
T PF02108_consen  107 DCRIETEDGII--DASIETQLEA  127 (128)
T ss_pred             CEEEEECCeeE--EeCHHHHHhc
Confidence            99999999975  9999999974

Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].

>PRK05687 fliH flagellar assembly protein H; Validated

Probab=98.59  E-value=4.6e-07  Score=71.85  Aligned_cols=85  Identities=25%  Similarity=0.323  Sum_probs=66.3

Q ss_pred             HHHHHHHHHHHHHHHhC--CCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 032491           19 YKKLLKGLIVQSLLRLK--EPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS   96 (139)
Q Consensus        19 Y~~~L~~LI~qa~~~l~--e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~   96 (139)
                      -++.+..+|.+++..+.  .+.++|+|+|.|.++|+..+...   .. ..   .+.|..|+  .|+             .
T Consensus       156 ~~~~il~~v~~al~~lp~~~~~v~i~v~P~D~~~v~~~~~~~---~~-~~---~~~l~~D~--~l~-------------~  213 (246)
T PRK05687        156 DPSAILAAIRELLQALPMFSGKPQLRVNPDDLELVEQLLGAE---LS-LH---GWRLLADP--SLH-------------R  213 (246)
T ss_pred             CHHHHHHHHHHHHHhccccCCCceEEECHHHHHHHHHHHhhH---HH-hC---CeEEEeCC--CcC-------------C
Confidence            34577789999999873  46899999999999999887632   11 11   46777774  332             4


Q ss_pred             ceEEEEecCCcEEEcccHHHHHHHHHHhhhH
Q 032491           97 GGVVVASRDGKIVCENTLDARLDVVFRKKLP  127 (139)
Q Consensus        97 GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp  127 (139)
                      ||++|.+.+|.  ||.|+++||+++++.+.+
T Consensus       214 Ggc~iet~~g~--vDa~l~~r~~~l~~~l~~  242 (246)
T PRK05687        214 GGCRISAEEGD--VDASLETRWQEVCRLLAP  242 (246)
T ss_pred             CCeEEEeCCCc--eeccHHHHHHHHHHHHhc
Confidence            99999999998  589999999999887754

>PRK09098 type III secretion system protein HrpB; Validated

Probab=98.51  E-value=1.2e-06  Score=69.57  Aligned_cols=88  Identities=20%  Similarity=0.222  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHh--CCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCC-CCCeEEeccccCCCCCCCCCCCCCCCccc
Q 032491           21 KLLKGLIVQSLLRL--KEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQV-HPPEIIVDHHIYLPPGPGHHNAHGPSCSG   97 (139)
Q Consensus        21 ~~L~~LI~qa~~~l--~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~-~~~~i~vd~~~~L~~~~~~~~~~~~~~~G   97 (139)
                      ..|-..+.+++..+  +.+.++|+++|.|.+.+...+......    .|+ ..+.|..|+  .|+             .|
T Consensus       133 ~~ll~~v~~al~~~~~~~~~v~IrV~P~D~~~v~~~~~~~~~~----~g~~~~l~Iv~Dp--~L~-------------~G  193 (233)
T PRK09098        133 AALFARAAQTLERVVDGASYLTVRVHPADLDAARAAFGAAAAA----GGRNVPVEVVGDP--RLA-------------PG  193 (233)
T ss_pred             HHHHHHHHHHHHHHhccCCcEEEEECHHHHHHHHHHHHHHHHh----cCCCcceEEEeCC--CCC-------------CC
Confidence            34556677888665  345899999999999999877765433    222 135566664  443             49


Q ss_pred             eEEEEecCCcEEEcccHHHHHHHHHHhhhHHH
Q 032491           98 GVVVASRDGKIVCENTLDARLDVVFRKKLPEI  129 (139)
Q Consensus        98 GVvv~s~dG~I~vdNTle~RL~~~~~~~lp~I  129 (139)
                      |+++.+..|.|  |.||++||+.+.+.+...+
T Consensus       194 gCviET~~G~I--Dasl~~ql~~L~~al~~~l  223 (233)
T PRK09098        194 ACVCEWDFGVF--DASLDTQLRALRRALARAL  223 (233)
T ss_pred             CeEEEeCCCeE--ecCHHHHHHHHHHHHHHHh
Confidence            99999999985  9999999988877665443

>COG1317 FliH Flagellar biosynthesis/type III secretory pathway protein [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.49  E-value=1.2e-06  Score=69.46  Aligned_cols=90  Identities=23%  Similarity=0.348  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHhCCC--cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 032491           19 YKKLLKGLIVQSLLRLKEP--AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS   96 (139)
Q Consensus        19 Y~~~L~~LI~qa~~~l~e~--~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~   96 (139)
                      -++.|-.+|.|++..+...  .++++|||.|++++....++..+.    .++. +.|..|+  .+             ..
T Consensus       138 ~~~~ll~~v~e~L~~~~~~~~~i~l~VnP~d~e~i~~~~~~~~~~----~~~~-l~l~~D~--~l-------------~~  197 (234)
T COG1317         138 DPEALLAAVREALEEVPLFAAAITLRVNPDDLEIIRQQLDEELSL----LGWR-LELVADP--AL-------------SP  197 (234)
T ss_pred             CHHHHHHHHHHHHHhccccccCeEEEECHHHHHHHHHHHHHHHhh----cchh-eeeccCC--CC-------------CC
Confidence            3578888999999887544  799999999999999988755433    3331 2344442  32             35


Q ss_pred             ceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHH
Q 032491           97 GGVVVASRDGKIVCENTLDARLDVVFRKKLPEIR  130 (139)
Q Consensus        97 GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir  130 (139)
                      |||++++..|.|  |-|+++||+.+.+.+.+..+
T Consensus       198 GgC~IeTe~G~i--Dasld~ql~~L~~~~~~~~~  229 (234)
T COG1317         198 GGCIIETEFGII--DASLDTQLAALKRALLESLK  229 (234)
T ss_pred             CCeEEEecCccc--cccHHHHHHHHHHHHHhhhc
Confidence            999999999986  99999999999998887653

>PRK06032 fliH flagellar assembly protein H; Validated

Probab=98.17  E-value=1.9e-05  Score=61.03  Aligned_cols=84  Identities=13%  Similarity=0.079  Sum_probs=62.3

Q ss_pred             HHHHHHHHHHHHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccceEE
Q 032491           22 LLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVV  100 (139)
Q Consensus        22 ~L~~LI~qa~~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GGVv  100 (139)
                      .+..++.+++..+.+. +++|+++|.|.+.++..+++......- .+  .+.|..|+  .|+             .||++
T Consensus       112 ~v~~~v~eal~~l~~~~~v~I~v~P~d~~~l~~~l~~~~~~~~~-~~--~~~l~~D~--~L~-------------~G~c~  173 (199)
T PRK06032        112 EITAAVRDCLRHLVATPHLVVRVNDALVEAARERLERLARESGF-EG--RLVVLADP--DMA-------------PGDCR  173 (199)
T ss_pred             HHHHHHHHHHHHhcCCCcEEEEECHHHHHHHHHHHHHHHHhcCc-Cc--cEEEeeCC--CCC-------------CCCeE
Confidence            4778888888887664 699999999999999988776543221 11  35555553  443             49999


Q ss_pred             EEecCCcEEEcccHHHHHHHHHHhh
Q 032491          101 VASRDGKIVCENTLDARLDVVFRKK  125 (139)
Q Consensus       101 v~s~dG~I~vdNTle~RL~~~~~~~  125 (139)
                      |.+.+|.|  |+|+++|+.++.+.+
T Consensus       174 vet~~G~v--d~d~~~~~~~I~~al  196 (199)
T PRK06032        174 LEWADGGV--VRDRAAIEARIEEAV  196 (199)
T ss_pred             EEeCCCeE--ecCHHHHHHHHHHHh
Confidence            99999986  888999888776543

>TIGR02499 HrpE_YscL_not type III secretion apparatus protein, HrpE/YscL family

Probab=97.92  E-value=6e-05  Score=55.74  Aligned_cols=71  Identities=20%  Similarity=0.172  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHHHHHHhCC-CcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCcc
Q 032491           18 SYKKLLKGLIVQSLLRLKE-PAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCS   96 (139)
Q Consensus        18 ~Y~~~L~~LI~qa~~~l~e-~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~   96 (139)
                      ..++++..++.+++..+.+ +.++|+|+|.|.+.++..+.+....    .   .+++..|+  .             -..
T Consensus        94 ~~~e~l~~lv~~al~~~~~~~~v~I~v~P~d~~~l~~~l~~~~~~----~---~~~i~~D~--~-------------l~~  151 (166)
T TIGR02499        94 DEPERLVRLLRQLLRAVANQGRLTLRVHPEQLDEVREALAERLAL----E---PWELEPDA--S-------------LAP  151 (166)
T ss_pred             CCHHHHHHHHHHHHHhCCCCCceEEEECHHHHHHHHHHHHHHhcc----C---CeEEeeCC--C-------------CCC
Confidence            4568889999999998876 4999999999999999887754221    1   14555553  2             346


Q ss_pred             ceEEEEecCCcEEE
Q 032491           97 GGVVVASRDGKIVC  110 (139)
Q Consensus        97 GGVvv~s~dG~I~v  110 (139)
                      ||++|.+.+|.|-+
T Consensus       152 G~c~vet~~G~vda  165 (166)
T TIGR02499       152 GACVLETESGVVDL  165 (166)
T ss_pred             CCEEEEeCCceeeC
Confidence            99999999998743

This model is related to Pfam model pfam06188, but is broader. pfam06188 describes HrpE-like proteins, components of bacterial type III secretion systems primarily in bacteria that infect plants. This model includes also the homologous proteins of animal pathogens, such as YscL of Yersinia pestis. This model excludes the related protein FliH of the bacterial flagellar apparatus (see pfam02108)

>PF06635 NolV: Nodulation protein NolV; InterPro: IPR010586 This family consists of several nodulation protein NolV sequences from different Rhizobium species []

Probab=96.77  E-value=0.019  Score=44.96  Aligned_cols=87  Identities=24%  Similarity=0.279  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHhCCC-cEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCccce
Q 032491           20 KKLLKGLIVQSLLRLKEP-AVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGG   98 (139)
Q Consensus        20 ~~~L~~LI~qa~~~l~e~-~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~~GG   98 (139)
                      .++|.+.+.+++..+.+. .|+|++.|.|.+.+...+..+.. +   .|...+.|..|+  .|++             |.
T Consensus       113 ~ell~r~vr~Al~~~~~~~~v~l~V~P~~vd~l~~~la~~~~-~---~g~~~i~I~aDp--~La~-------------~~  173 (207)
T PF06635_consen  113 DELLVRAVRQALSQIRQGAEVTLRVAPADVDMLRRELAALEG-R---PGRPKIRIVADP--RLAA-------------GQ  173 (207)
T ss_pred             HHHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHhhhc-c---CCCCceeeecCC--CCCC-------------CC
Confidence            467888888999988777 89999999999999988766522 2   233345666663  5543             88


Q ss_pred             EEEEecCCcEEEcccHHHHHHHHHHhhhH
Q 032491           99 VVVASRDGKIVCENTLDARLDVVFRKKLP  127 (139)
Q Consensus        99 Vvv~s~dG~I~vdNTle~RL~~~~~~~lp  127 (139)
                      +|+.|+-|.|  |=+|++-|.-+...+.|
T Consensus       174 Cvlese~G~V--dagL~aQL~ALr~a~~~  200 (207)
T PF06635_consen  174 CVLESEFGVV--DAGLDAQLRALRLAFGP  200 (207)
T ss_pred             eeeecccchh--hccHHHHHHHHHHHhcc
Confidence            9999999985  88999988877776654

The function of this family is unclear.; GO: 0009877 nodulation

>PRK13436 F0F1 ATP synthase subunit delta; Provisional

Probab=96.75  E-value=0.011  Score=44.76  Aligned_cols=31  Identities=19%  Similarity=0.345  Sum_probs=27.0

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  126 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~l  126 (139)
                      +.+||+++..  |.-++|.|+.+||+++...+.
T Consensus       148 slIGGi~i~~--gd~viD~Sik~~L~~l~~~l~  178 (179)
T PRK13436        148 KLIAGIKIKV--DNKVFENSIKSKLKELKKQVL  178 (179)
T ss_pred             HHcCceEEEE--CCEEeehhHHHHHHHHHHHHh
Confidence            8899999998  667789999999999887654

>PRK13430 F0F1 ATP synthase subunit delta; Provisional

Probab=96.68  E-value=0.021  Score=46.27  Aligned_cols=30  Identities=30%  Similarity=0.464  Sum_probs=26.7

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  125 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~  125 (139)
                      +.+||++|..  |.-++|+|+.+||+++...+
T Consensus       240 sLIGGivI~v--Gd~viD~Sv~~rL~~L~~~L  269 (271)
T PRK13430        240 SVLGGMRVQV--GDEVIDGSVAGRLERLRRRL  269 (271)
T ss_pred             cccCcEEEEE--CCEEEehhHHHHHHHHHHHh
Confidence            8899999999  66789999999999887765

>PRK13434 F0F1 ATP synthase subunit delta; Provisional

Probab=96.62  E-value=0.017  Score=43.90  Aligned_cols=31  Identities=23%  Similarity=0.358  Sum_probs=27.7

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  126 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~l  126 (139)
                      +.+||+++..  |.-++|.|+.+||+++.+.+.
T Consensus       144 sLIGG~ii~i--gd~viD~Svk~~L~~l~~~l~  174 (184)
T PRK13434        144 NLLGGFVVQF--NDLKIEKSIASQLGEIKKAML  174 (184)
T ss_pred             HHcCceEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            8899999999  667889999999999888774

>PF06188 HrpE: HrpE/YscL/FliH and V-type ATPase subunit E; InterPro: IPR009335 This family consists of several bacterial HrpE proteins, which are believed to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) []

Probab=96.59  E-value=0.022  Score=43.89  Aligned_cols=85  Identities=20%  Similarity=0.314  Sum_probs=60.4

Q ss_pred             HHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCC
Q 032491            2 MEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYL   81 (139)
Q Consensus         2 ~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L   81 (139)
                      +..|.++|-.-..++..+..+++.|+.+-   ..+.+++++|+|.+.+.|...+.+-.        ...+++..|+  .|
T Consensus        99 l~~al~~lL~e~~~~qrv~aLlr~l~~~~---~~~~~~tL~~hP~~~~~V~~~L~~~~--------~~~w~l~~D~--sl  165 (191)
T PF06188_consen   99 LSQALERLLDETPDQQRVAALLRQLLASQ---RQESEATLRCHPDQLEEVAAWLAEHP--------ALHWQLQADE--SL  165 (191)
T ss_pred             HHHHHHHHHHcCCchHHHHHHHHHHHHhc---ccccceEEEECHHHHHHHHHHHHhCC--------CcceeeccCC--CC
Confidence            44555565554456667888888887553   45678999999999999998887521        1135666664  55


Q ss_pred             CCCCCCCCCCCCCccceEEEEecCCcEEEcc
Q 032491           82 PPGPGHHNAHGPSCSGGVVVASRDGKIVCEN  112 (139)
Q Consensus        82 ~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdN  112 (139)
                      ++             |..++.+..|...+|.
T Consensus       166 ~~-------------~~l~L~t~~G~~~l~w  183 (191)
T PF06188_consen  166 AP-------------DQLKLETANGEFRLDW  183 (191)
T ss_pred             CC-------------CceEEEcCCCcEEECH
Confidence            44             7899999999988773

This family also includes V-type proton ATPase subunit E proteins. This subunit appears to form a tight interaction with subunit G in the F0 complex. Subunits E and G may act together as stators to prevent certain subunits from rotating with the central rotary element []. PF01991 from PFAM also contains V-type ATPase subunit E proteins. There is an evolutionary link between type III secretion systems and membrane-associated proton translocating ATPases [].

>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B

Probab=96.41  E-value=0.076  Score=42.20  Aligned_cols=29  Identities=17%  Similarity=0.255  Sum_probs=25.6

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRK  124 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~  124 (139)
                      +.+||+++..  |..++|+|+.++|+.+...
T Consensus       216 ~ligGi~l~~--g~~~id~Si~~~L~~l~~~  244 (246)
T TIGR03321       216 DLIGGIELTA--GGHKLAWSVDDYLESLEED  244 (246)
T ss_pred             hhcCceEEEE--CCEEEechHHHHHHHHHhh
Confidence            8899999998  6778999999999887764

CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.

>PRK13428 F0F1 ATP synthase subunit delta; Provisional

Probab=96.05  E-value=0.054  Score=46.75  Aligned_cols=61  Identities=21%  Similarity=0.272  Sum_probs=41.0

Q ss_pred             eccccHHHHHHHHHHHHHHHHHhhCCC-CCeEEeccccCCCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHH
Q 032491           43 CRKDDHHLVESVLESAKEEYAQKLQVH-PPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVV  121 (139)
Q Consensus        43 ~~~~D~~lv~~~l~~~~~~~~~~~~~~-~~~i~vd~~~~L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~  121 (139)
                      ..|=+.+-.+.+...+.+.|    |.+ .+++.||                ++.+||++|.-  |..++|+|+.+||+.+
T Consensus       382 A~pLs~~q~~~L~~~L~k~~----g~~V~l~~~VD----------------psLiGGivI~v--Gd~viD~Sv~~rL~~l  439 (445)
T PRK13428        382 AAELSDAQRTRLTEVLSRIY----GRPVSVQLHID----------------PELLGGLSIAV--GDEVIDGTLSSRLAAA  439 (445)
T ss_pred             ecCCCHHHHHHHHHHHHHHH----CCceEEEeeeC----------------chhhCceEEEE--CCEEeehhHHHHHHHH
Confidence            45555555555555444444    431 2334445                28899999998  7788999999999988


Q ss_pred             HHhh
Q 032491          122 FRKK  125 (139)
Q Consensus       122 ~~~~  125 (139)
                      ...+
T Consensus       440 ~~~l  443 (445)
T PRK13428        440 EAQL  443 (445)
T ss_pred             HhhC
Confidence            7653

>PRK13441 F0F1 ATP synthase subunit delta; Provisional

Probab=95.04  E-value=0.26  Score=37.17  Aligned_cols=31  Identities=29%  Similarity=0.274  Sum_probs=27.2

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  126 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~l  126 (139)
                      +.+||+++..  |.-++|+|+.+||+.+...++
T Consensus       147 sliGG~~i~i--g~~~~D~Sik~~L~~l~~~l~  177 (180)
T PRK13441        147 SLIAGAVVEF--EGKRLDVTVQGRLKKIAREVL  177 (180)
T ss_pred             HHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHh
Confidence            8899999998  557789999999999888775

>COG0712 AtpH F0F1-type ATP synthase, delta subunit (mitochondrial oligomycin sensitivity protein) [Energy production and conversion]

Probab=95.01  E-value=0.097  Score=39.94  Aligned_cols=30  Identities=20%  Similarity=0.411  Sum_probs=25.9

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  125 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~  125 (139)
                      +.+||+++..  |.-++|+|+.++|+++...+
T Consensus       148 sliGG~iI~v--gd~viD~Svr~~L~~l~~~l  177 (178)
T COG0712         148 SLIGGLIIKV--GDEVIDGSVRGKLKRLAKAL  177 (178)
T ss_pred             HHhCceEEEE--CCEEEechHHHHHHHHHHhc
Confidence            8899999999  66778999999999876653

>TIGR01145 ATP_synt_delta ATP synthase, F1 delta subunit

Probab=92.91  E-value=1.2  Score=33.27  Aligned_cols=29  Identities=24%  Similarity=0.465  Sum_probs=24.7

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRK  124 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~  124 (139)
                      +.+||+++..  |..++|+|+.++|+.+...
T Consensus       143 ~ligGi~i~~--~~~~iD~Si~~~L~~l~~~  171 (172)
T TIGR01145       143 DLIGGVIIRI--GDRVIDGSVRGQLKRLSRQ  171 (172)
T ss_pred             HHhCceEEEE--CCEEEehhHHHHHHHHHhh
Confidence            7899999998  5577999999999887654

This model describes the ATP synthase delta subunit in bacteria, mitochondria, and chloroplasts. It is sometimes called OSCP for Oligomycin Sensitivity Conferring Protein. F1/F0-ATP synthase is a multisubunit, membrane associated enzyme found in bacteria and organelles of higher eukaryotes, namely, mitochondria and chloroplast. This enzyme is principally involved in the synthesis of ATP from ADP and inorganic phosphate by coupling the energy derived from the proton electrochemical gradient across the biological membrane. A brief description of this multisubunit enzyme complex: F1 and F0 represent two major clusters of subunits. Delta subunit belongs to the F1 cluster or sector and functionally implicated in the overall stability of the complex. Expression of truncated forms of this subunit results in low ATPase activity.

>PRK13429 F0F1 ATP synthase subunit delta; Provisional

Probab=92.84  E-value=1.2  Score=33.31  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=25.4

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  125 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~  125 (139)
                      +.+||+++..  |.-++|+|+.++|+.+.+.+
T Consensus       148 sligG~~i~~--~~~~iD~Si~~~L~~l~~~l  177 (181)
T PRK13429        148 SLIGGVVVKI--GDKVLDASVRTQLRRLKETL  177 (181)
T ss_pred             hhhCceEEEE--CCEEEehhHHHHHHHHHHHH
Confidence            7799999998  44678999999998887665

>PRK05758 F0F1 ATP synthase subunit delta; Validated

Probab=92.45  E-value=1.4  Score=32.92  Aligned_cols=30  Identities=23%  Similarity=0.412  Sum_probs=25.7

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKK  125 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~  125 (139)
                      +.+||+++..  |..++|+|+.++|+...+.+
T Consensus       146 ~ligG~~i~~--~~~~~d~Si~~~L~~l~~~l  175 (177)
T PRK05758        146 SLIGGVIIKV--GDRVIDGSVRGKLERLKDAL  175 (177)
T ss_pred             HHhCceEEEE--CCEEeehhHHHHHHHHHHHh
Confidence            7799999998  44778999999998887765

>CHL00119 atpD ATP synthase CF1 delta subunit; Validated

Probab=90.56  E-value=3.1  Score=31.41  Aligned_cols=31  Identities=19%  Similarity=0.309  Sum_probs=25.8

Q ss_pred             CccceEEEEecCCcEEEcccHHHHHHHHHHhhh
Q 032491           94 SCSGGVVVASRDGKIVCENTLDARLDVVFRKKL  126 (139)
Q Consensus        94 ~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~l  126 (139)
                      +.+||+++..  |..++|+|+.++|+...+.+.
T Consensus       150 ~ligGi~i~~--g~~~~D~Si~~~L~~l~~~l~  180 (184)
T CHL00119        150 SLIGGFLIKI--GSKVIDTSIKGQLKQLASHLD  180 (184)
T ss_pred             HHhCcEEEEE--CCEEEeHhHHHHHHHHHHHHH
Confidence            7799999998  557789999999988776553

>PF00213 OSCP: ATP synthase delta (OSCP) subunit; InterPro: IPR000711 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=86.09  E-value=0.059  Score=40.06  Aligned_cols=78  Identities=19%  Similarity=0.291  Sum_probs=28.6

Q ss_pred             eccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccCCCCCCCC-----------------CCCCCCCccceEEEEecC
Q 032491           43 CRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGH-----------------HNAHGPSCSGGVVVASRD  105 (139)
Q Consensus        43 ~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~-----------------~~~~~~~~~GGVvv~s~d  105 (139)
                      +...-..++..++.++...|....|.  ..++|-....|+++...                 ...-+++.+||+++..  
T Consensus        77 ~~~~r~~~l~~i~~~~~~~~~~~~~~--~~~~V~sA~~l~~~q~~~l~~~l~~~~~~~~v~~~~~vD~sLigG~~i~~--  152 (172)
T PF00213_consen   77 IDNNRLSLLPEILEEFEELVNEHNGI--VEATVTSAFPLSEEQKKKLEKKLKKKYGKKKVELNYKVDPSLIGGFIIEV--  152 (172)
T ss_dssp             CCTT-CCCHHHHHHHHHHHHHHHCCT--S-B-SSS-B----SSSTTTTTTCCCTTTT-----------------------
T ss_pred             HhcCCcccHHHHHHHHHHHHHHHcCe--EEEEEEEecCCCHHHHHHHHHHHHHHHCCCeeeEEEEEccccCcEEEEEE--
Confidence            34444445566666666666555554  23333333344433311                 0122468899999999  


Q ss_pred             CcEEEcccHHHHHHHHHHh
Q 032491          106 GKIVCENTLDARLDVVFRK  124 (139)
Q Consensus       106 G~I~vdNTle~RL~~~~~~  124 (139)
                      |..++|.|+.+||+++...
T Consensus       153 ~~~~iD~Sv~~~L~~l~~~  171 (172)
T PF00213_consen  153 GDKVIDASVKSRLEQLKKE  171 (172)
T ss_dssp             ----TTTTTTTTTTTT-TT
T ss_pred             CCEEEehhHHHHHHHHHhc
Confidence            6677899999999876554

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This family represents subunits called delta in bacterial and chloroplast ATPase, or OSCP (oligomycin sensitivity conferral protein) in mitochondrial ATPase (note that in mitochondria there is a different delta subunit, IPR001469 from INTERPRO). The OSCP/delta subunit appears to be part of the peripheral stalk that holds the F1 complex alpha3beta3 catalytic core stationary against the torque of the rotating central stalk, and links subunit A of the F0 complex with the F1 complex. In mitochondria, the peripheral stalk consists of OSCP, as well as F0 components F6, B and D. In bacteria and chloroplasts the peripheral stalks have different subunit compositions: delta and two copies of F0 component B (bacteria), or delta and F0 components B and B' (chloroplasts) [, ]. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046933 hydrogen ion transporting ATP synthase activity, rotational mechanism, 0015986 ATP synthesis coupled proton transport; PDB: 2A7U_B 1ABV_A 2WSS_S 2BO5_A 2JMX_A.

>PRK08474 F0F1 ATP synthase subunit delta; Validated

Probab=83.27  E-value=13  Score=27.78  Aligned_cols=30  Identities=17%  Similarity=0.119  Sum_probs=21.2

Q ss_pred             cceEEEEecCCcEEEcccHHHHHHHHHHhhhHHH
Q 032491           96 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEI  129 (139)
Q Consensus        96 ~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~I  129 (139)
                      +||+++..  |..++|.  ...|+++...+..-|
T Consensus       143 IGG~ii~i--gd~v~D~--s~~l~~~~~~~~~~~  172 (176)
T PRK08474        143 YDGIKVEV--DDLGVEV--SFSKDRLKNQLIEYI  172 (176)
T ss_pred             CCCEEEEE--CCEEEEe--eeeHHHHHHHHHHHH
Confidence            89999998  6677788  456666666555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	139
4dl0_J	233	Crystal Structure Of The Heterotrimeric Egchead Per		3e-13

>pdb|4DL0|J Chain J, Crystal Structure Of The Heterotrimeric Egchead Peripheral Stalk Complex Of The Yeast Vacuolar Atpase Length = 233

Iteration: 1
 Score = 70.5 bits (171), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/133 (33%), Positives = 73/133 (54%), Gaps = 9/133 (6%)
Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           + E   +++  ++ + + YK +L+ LIV++LL+L EP  +++  + D  L+ES+ +    
Sbjct: 99  IFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMR 158
Query: 61  EYAQKLQVHPPEIIVDHHIYLXXXXXXXXXXXXSCSGGVVVASRDGKIVCENTLDARLDV 120
           EY +K Q  P E IV  + YL              SGGVVV++   KI   NTL+ RL +
Sbjct: 159 EYGEKAQRAPLEEIVISNDYLNKDL---------VSGGVVVSNASDKIEINNTLEERLKL 209
Query: 121 VFRKKLPEIRKQL 133
           +  + LP IR +L
Sbjct: 210 LSEEALPAIRLEL 222

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	139
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	2e-28
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	4e-24
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	6e-18

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A Length = 198

 Score =  101 bits (254), Expect = 2e-28
 Identities = 28/133 (21%), Positives = 52/133 (39%), Gaps = 22/133 (16%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           ++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +E  K 
Sbjct: 86  VLEEVKRRLETMSED--EYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKS 143

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           E           +                       GGV+V + DG+I  +NT +AR++ 
Sbjct: 144 ELGDVSIELGETV--------------------DTMGGVIVETEDGRIRIDNTFEARMER 183

Query: 121 VFRKKLPEIRKQL 133
              +    I K L
Sbjct: 184 FEGEIRSTIAKVL 196

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J Length = 187

 Score = 90.7 bits (225), Expect = 4e-24
 Identities = 20/133 (15%), Positives = 46/133 (34%), Gaps = 29/133 (21%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           +     + +  + +    + ++++ L +++L  L     L+    +D   +E++      
Sbjct: 82  VRRRVREALEALPQKPE-WPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARERGV 139

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           E   +                           P+   GV     +GK   EN+L ARLD 
Sbjct: 140 ELQAE---------------------------PALRLGVRAVGAEGKTQVENSLLARLDR 172

Query: 121 VFRKKLPEIRKQL 133
            +     ++ + L
Sbjct: 173 AWDALSSKVAQAL 185

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii} Length = 106

 Score = 72.8 bits (178), Expect = 6e-18
 Identities = 23/120 (19%), Positives = 44/120 (36%), Gaps = 16/120 (13%)

Query: 15  DHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVE-SVLESAKEEYAQKLQVHPPEI 73
           +   YK  L  LI    + L    +++R  K D  L++ S L + ++E     +      
Sbjct: 1   EQPEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKKV---- 56

Query: 74  IVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQL 133
                   P             +GG ++ + DG    +N+L+A  +         I ++L
Sbjct: 57  -TVLKKGEPV----------DIAGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKL 105

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	139
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	100.0
3lg8_A	106	A-type ATP synthase subunit E; archaea, peripheral	99.96
3v6i_A	187	V-type ATP synthase subunit E; peripheral stator s	99.94
2dm9_A	198	V-type ATP synthase subunit E; A-ATPase, structura	99.9
2wss_S	190	ATP synthase subunit O, mitochondrial; hydrogen IO	83.01

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=100.00  E-value=1.3e-35  Score=232.23  Aligned_cols=130  Identities=34%  Similarity=0.539  Sum_probs=117.0

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|++|+++|.++++|+..|+++|++||.||+..+.+++++|+|||.|.++|+++++++..+|++.+|.......++...+
T Consensus        99 v~~~a~~~L~~~~~d~~~Y~~lL~~Li~eal~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  178 (233)
T 4efa_E           99 IFEETKEKLSGIANNRDEYKPILQSLIVEALLKLLEPKAIVKALERDVDLIESMKDDIMREYGEKAQRAPLEEIVISNDY  178 (233)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHCCSEEEEEECTTTHHHHTTSHHHHHHHHHHHTTTSCCCEEEECSSC
T ss_pred             HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhcCCCcEEEEecHhhHHHHHHHHHHHHHHHHHHhCCCCcccccccccc
Confidence            58999999999999988999999999999999999999999999999999999999999999999887544444444566


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcCCCCC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVSQVAA  139 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg~~~~  139 (139)
                      |++         .+|+|||+|+|.||+|+|||||++||++++++++|+||+.|||.||+
T Consensus       179 l~~---------~~~~GGvil~s~dGkI~vdNTle~RL~~~~~~~lp~Ir~~LFG~~~~  228 (233)
T 4efa_E          179 LNK---------DLVSGGVVVSNASDKIEINNTLEERLKLLSEEALPAIRLELYGPSKT  228 (233)
T ss_dssp             CCT---------TTCSSEEEEECTTSCCEEEEEHHHHHHHHHHHHHHHHHHHHSCCC--
T ss_pred             CCc---------ccccCceEEEECCCCEEEECCHHHHHHHHHHHHHHHHHHHHCCcCCC
Confidence            654         38999999999999999999999999999999999999999999984

>3lg8_A A-type ATP synthase subunit E; archaea, peripheral stalk, hydrolase, structural protein, TR protein; 4.10A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=7.4e-33  Score=194.16  Aligned_cols=103  Identities=21%  Similarity=0.317  Sum_probs=95.7

Q ss_pred             hhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHH-HHHHHHHHHHhhCCCCCeEEeccccCCCCCCCCCCCCCCCc
Q 032491           17 NSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESV-LESAKEEYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSC   95 (139)
Q Consensus        17 ~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~-l~~~~~~~~~~~~~~~~~i~vd~~~~L~~~~~~~~~~~~~~   95 (139)
                      ++|+++|++||.||+..+++++++|+||++|.++|+++ ++++.++|++++|. ++++++++       |       .+|
T Consensus         3 ~~Y~~lL~~LI~q~~~~l~e~~v~v~~r~~D~~lv~~~~l~~~~~e~~~~~g~-~~~v~~~~-------~-------~~~   67 (106)
T 3lg8_A            3 PEYKDKLIKLIKDGAISLGGGELIVRLNKRDMELIDDSTLWNLEKEVENATKK-VTVLKKGE-------P-------VDI   67 (106)
T ss_dssp             CSTTTHHHHHHHHHHHHHTCSSCCCBCSSHHHHTTTTSSCTTTTTTHHHHSSS-CCCCCCCC-------C-------CSS
T ss_pred             cHHHHHHHHHHHHHHHHcCCCcEEEEECHhhHHHHHHhhHHHHHHHHHHHhCC-eEEEEeCC-------C-------ccc
Confidence            47999999999999999999999999999999999999 99999999999997 56665542       2       389


Q ss_pred             cceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhc
Q 032491           96 SGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLV  134 (139)
Q Consensus        96 ~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LF  134 (139)
                      +|||++++.||+|+|||||++||++++++++|+||+.||
T Consensus        68 ~GGvil~s~dg~I~vdNTle~rL~~l~~~~~~eI~~~LF  106 (106)
T 3lg8_A           68 AGGCIIETADGLKSLDNSLEAIFNRNLNVIRARITEKLF  106 (106)
T ss_dssp             SCBCBCSSCSCBCCCCSHHHHSHHHHHHHHHHHTTTSCC
T ss_pred             cccEEEEeCCCCEEEECCHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999999999999999999999999999999999

>3v6i_A V-type ATP synthase subunit E; peripheral stator stalk, right handed coiled-coil, ATPase/SY ATP binding, membrane, hydrolase; 2.25A {Thermus thermophilus} PDB: 3k5b_E 3j0j_J

Probab=99.94  E-value=8e-27  Score=176.79  Aligned_cols=106  Identities=19%  Similarity=0.296  Sum_probs=93.5

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|++|+++|.+++++ +.|+++|.+||.||+..+.+++++| |||.|.++++.++++.        |   +++..+    
T Consensus        82 v~~~a~~~L~~~~~~-~~Y~~~L~~Li~ea~~~l~~~~~vv-~~~~D~~~v~~~~~~~--------~---~~~~~~----  144 (187)
T 3v6i_A           82 VRRRVREALEALPQK-PEWPEVVRKLALEALEALPGAKALV-ANPEDLPHLEALARER--------G---VELQAE----  144 (187)
T ss_dssp             HHHHHHHHHHHGGGS-TTHHHHHHHHHHHHHHHCTTCCEEE-ECTTTHHHHHHHHHHH--------T---CEEEEC----
T ss_pred             HHHHHHHHHHhhhCC-ccHHHHHHHHHHHHHHHcCCCCeEE-ECHHHHHHHHHHHHhc--------C---eeeCCC----
Confidence            588999999999988 5799999999999999999999866 9999999999887641        2   333221    


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  135 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg  135 (139)
                                  .+|.|||+|+++||+|+|||||++||+.++++++|+|++.|||
T Consensus       145 ------------~~~~GGvil~~~dG~I~vdnTle~rL~~~~~~~~~~I~~~LFg  187 (187)
T 3v6i_A          145 ------------PALRLGVRAVGAEGKTQVENSLLARLDRAWDALSSKVAQALWG  187 (187)
T ss_dssp             ------------TTCCSEEEEECTTSSCEEEEEHHHHHHHHHHHHHHHHHHHHC-
T ss_pred             ------------CcccCceEEEeCCCCEEEECCHHHHHHHHHHHhHHHHHHHhcC
Confidence                        2889999999999999999999999999999999999999998

>2dm9_A V-type ATP synthase subunit E; A-ATPase, structural genomics, NPPSFA, national project on P structural and functional analyses; 1.85A {Pyrococcus horikoshii} SCOP: d.81.4.1 PDB: 2dma_A 4dt0_A

Probab=99.90  E-value=1.8e-23  Score=157.11  Aligned_cols=113  Identities=25%  Similarity=0.379  Sum_probs=100.4

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|..|++.|.+++  .+.|+++|.+||.+++..+.+++++|+|+|.|.+.+++.++++...|+      ++.++++.   
T Consensus        86 ~~~~a~~~l~~l~--~~~y~~~l~~li~e~~~~~~~~~v~i~v~~~D~~~v~~~~~~~~~~~~------~~~l~i~~---  154 (198)
T 2dm9_A           86 VLEEVKRRLETMS--EDEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIELGE---  154 (198)
T ss_dssp             HHHHHHHHHHHCC--HHHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEECC---
T ss_pred             HHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHcCCCCEEEEECHhHHHHHHHHHHHHHHHhc------CceEEECC---
Confidence            3678999999964  568999999999999999988999999999999999999998877775      24666652   


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  135 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg  135 (139)
                          |       ..+.|||+|.+++|+|.|||||++||+.+++.++|.|+++|||
T Consensus       155 ----~-------~~~~GG~~i~~~~G~i~id~tl~~rl~~~~~~l~~~i~~~LF~  198 (198)
T 2dm9_A          155 ----T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  198 (198)
T ss_dssp             ----C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             ----C-------CCccCceEEEeCCCCEEEECcHHHHHHHHHHHhHHHHHHHhcC
Confidence                1       2789999999999999999999999999999999999999997

>2wss_S ATP synthase subunit O, mitochondrial; hydrogen ION transport, ATP synthesis, phosphoprotein, UBL conjugation, transit peptide; HET: ANP ADP; 3.20A {Bos taurus} PDB: 2bo5_A 2jmx_A

Probab=83.01  E-value=0.04  Score=40.92  Aligned_cols=32  Identities=19%  Similarity=0.333  Sum_probs=14.3

Q ss_pred             CCCccceEEEEecCCcEEEcccHHHHHHHHHHhh
Q 032491           92 GPSCSGGVVVASRDGKIVCENTLDARLDVVFRKK  125 (139)
Q Consensus        92 ~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~  125 (139)
                      |.+.+||++|...  .-++|.|+.+||+++.+.+
T Consensus       155 DpsLiGG~~v~vg--d~viD~Sv~~~L~~l~~~L  186 (190)
T 2wss_S          155 DPSIMGGMIVRIG--EKYVDMSAKTKIQKLSRAM  186 (190)
T ss_dssp             ----------------CCTTTTTTTTTTTTCTTT
T ss_pred             ChhHhCeEEEEEC--CEEEehhHHHHHHHHHHHH
Confidence            5688999999994  4567999999998766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	139
d2dm9a1	118	d.81.4.1 (A:81-198) V-type ATP synthase subunit E	6e-29

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]} Length = 118

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

 Score =   99 bits (249), Expect = 6e-29
 Identities = 29/133 (21%), Positives = 53/133 (39%), Gaps = 22/133 (16%)

Query: 1   MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKE 60
           ++E   + +  +S D   Y + +K L+ +++  L E  V +   +    L+ S +E  K 
Sbjct: 6   VLEEVKRRLETMSEDE--YFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKS 63

Query: 61  EYAQKLQVHPPEIIVDHHIYLPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDV 120
           E           I +                     GGV+V + DG+I  +NT +AR++ 
Sbjct: 64  ELGDV------SIELGE--------------TVDTMGGVIVETEDGRIRIDNTFEARMER 103

Query: 121 VFRKKLPEIRKQL 133
              +    I K L
Sbjct: 104 FEGEIRSTIAKVL 116

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	139
d2dm9a1	118	V-type ATP synthase subunit E {Pyrococcus horikosh	99.97

>d2dm9a1 d.81.4.1 (A:81-198) V-type ATP synthase subunit E {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: FwdE/GAPDH domain-like
superfamily: V-type ATPase subunit E-like
family: V-type ATPase subunit E
domain: V-type ATP synthase subunit E
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=2.7e-31  Score=186.66  Aligned_cols=113  Identities=25%  Similarity=0.379  Sum_probs=102.2

Q ss_pred             CHHHHHHHHHhhccChhhHHHHHHHHHHHHHHHhCCCcEEEEeccccHHHHHHHHHHHHHHHHHhhCCCCCeEEeccccC
Q 032491            1 MMEAASKEVLNVSRDHNSYKKLLKGLIVQSLLRLKEPAVLLRCRKDDHHLVESVLESAKEEYAQKLQVHPPEIIVDHHIY   80 (139)
Q Consensus         1 l~~~a~~~L~~~~~~~~~Y~~~L~~LI~qa~~~l~e~~v~V~~~~~D~~lv~~~l~~~~~~~~~~~~~~~~~i~vd~~~~   80 (139)
                      +|++|.++|.++++  ++|+++|++||.||+..+++++++|+|||+|.++++++++++..+|+      .+.++++.   
T Consensus         6 v~~~a~~~l~~~~~--~~Y~~~L~~Li~~a~~~l~~~ev~v~~~~~D~~~v~~~~~~~~~~~~------~~~~~~~~---   74 (118)
T d2dm9a1           6 VLEEVKRRLETMSE--DEYFESVKALLKEAIKELNEKKVRVMSNEKTLGLIASRIEEIKSELG------DVSIELGE---   74 (118)
T ss_dssp             HHHHHHHHHHHCCH--HHHHHHHHHHHHHHHHHHTCSEEEEECCHHHHHHHHHTHHHHHHHCT------TCEEEECC---
T ss_pred             HHHHHHHHHHccCh--hHHHHHHHHHHHHHHHHhCCCcEEEEEchhhHHHHHHHHHHHHHHcC------CceeEeCC---
Confidence            48899999999964  47999999999999999999999999999999999999998877765      34566652   


Q ss_pred             CCCCCCCCCCCCCCccceEEEEecCCcEEEcccHHHHHHHHHHhhhHHHHHHhcC
Q 032491           81 LPPGPGHHNAHGPSCSGGVVVASRDGKIVCENTLDARLDVVFRKKLPEIRKQLVS  135 (139)
Q Consensus        81 L~~~~~~~~~~~~~~~GGVvv~s~dG~I~vdNTle~RL~~~~~~~lp~Ir~~LFg  135 (139)
                          +       .+|.|||||+|+||+|.|||||++||++++++++|+|++.|||
T Consensus        75 ----~-------~~~~GGvil~s~dG~I~vdnTle~rl~~~~e~~~~~i~~~LFG  118 (118)
T d2dm9a1          75 ----T-------VDTMGGVIVETEDGRIRIDNTFEARMERFEGEIRSTIAKVLFG  118 (118)
T ss_dssp             ----C-------CCCSSEEEEEETTSSCEEEEEHHHHHHHTHHHHHHHHHHHHHC
T ss_pred             ----C-------CccCCCEEEEecCCCEEEECcHHHHHHHHHHHhHHHHHHHccC
Confidence                1       3899999999999999999999999999999999999999998