Citrus Sinensis ID: 032641

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
ccccccccHHHHccccccccccccccccccccccccccccccEEEEEEEccccccccccccEEEEEEcccccEEEEEEcccccccccccccEEEEEEccccccccccccccEEEEEEEcccHHHHHHHcccccccc
cHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEEEEccccccHHHHHEEEEEEEcccEEEEEEcccccEEEEccccEEEEEccccccccccccccEEEEEEEEcccHHHHHHHcccccccc
mgagrklkshrRRQRwadksykkshlgnewkkpfagsshakgIVLEKIGieakqpnsaiRKCARVQLIKNGKKIAafvpndgclnyiEENDEVLIAGfgrkghavgdipgVRFKVVKVSGVSLLALFkekkekprs
mgagrklkshrrrqrwadksykkshlgnewkkpfagsshAKGIVLEKIGieakqpnsaiRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVsllalfkekkekprs
MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
**************************************HAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALF*********
*GAGR********************************SHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLAL**********
***********************SHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFK********
MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEK******
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MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query136 2.2.26 [Sep-21-2011]
P46297142 40S ribosomal protein S23 N/A no 1.0 0.957 0.985 1e-72
Q9M5Z9142 40S ribosomal protein S23 N/A no 1.0 0.957 0.985 1e-72
P49201142 40S ribosomal protein S23 yes no 1.0 0.957 0.963 8e-70
Q9SF35142 40S ribosomal protein S23 yes no 1.0 0.957 0.941 3e-67
Q9GRJ3143 40S ribosomal protein S23 N/A no 1.0 0.951 0.810 2e-60
Q86FP7143 40S ribosomal protein S23 N/A no 1.0 0.951 0.810 4e-60
P90707143 40S ribosomal protein S23 N/A no 0.985 0.937 0.8 3e-59
Q962Q7143 40S ribosomal protein S23 N/A no 0.985 0.937 0.8 4e-59
Q6EV23143 40S ribosomal protein S23 N/A no 0.985 0.937 0.8 4e-59
Q8T3U2143 40S ribosomal protein S23 yes no 0.985 0.937 0.814 6e-59
>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa GN=RPS23 PE=2 SV=1 Back     alignment and function desciption
 Score =  271 bits (692), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 134/136 (98%), Positives = 135/136 (99%)

Query: 1   MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGA RKLK+HRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAARKLKNHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 136
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

Fragaria ananassa (taxid: 3747)
>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula GN=RPS23 PE=2 SV=1 Back     alignment and function description
>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis thaliana GN=RPS23B PE=2 SV=2 Back     alignment and function description
>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis thaliana GN=RPS23A PE=2 SV=2 Back     alignment and function description
>sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rubellus GN=RPS23 PE=2 SV=1 Back     alignment and function description
>sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor variabilis GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1 Back     alignment and function description
>sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera frugiperda GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardanus GN=RpS23 PE=2 SV=1 Back     alignment and function description
>sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila melanogaster GN=RpS23 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query136
77999293142 unknown [Solanum tuberosum] 1.0 0.957 1.0 8e-72
449440067142 PREDICTED: 40S ribosomal protein S23-lik 1.0 0.957 0.992 2e-71
297741557189 unnamed protein product [Vitis vinifera] 1.0 0.719 0.985 2e-71
356537485142 PREDICTED: 40S ribosomal protein S23-lik 1.0 0.957 0.992 3e-71
388521427142 unknown [Lotus japonicus] 1.0 0.957 0.992 3e-71
224069336142 predicted protein [Populus trichocarpa] 1.0 0.957 0.992 4e-71
224155202136 predicted protein [Populus trichocarpa] 1.0 1.0 0.992 6e-71
255565826142 40S ribosomal protein S23, putative [Ric 1.0 0.957 0.985 6e-71
1173187142 RecName: Full=40S ribosomal protein S23; 1.0 0.957 0.985 7e-71
363808292142 uncharacterized protein LOC100776345 [Gl 1.0 0.957 0.985 9e-71
>gi|77999293|gb|ABB16993.1| unknown [Solanum tuberosum] Back     alignment and taxonomy information
 Score =  274 bits (701), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 136/136 (100%), Positives = 136/136 (100%)

Query: 1   MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query: 121 VSLLALFKEKKEKPRS 136
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449440067|ref|XP_004137806.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449452122|ref|XP_004143809.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449463681|ref|XP_004149560.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449483351|ref|XP_004156564.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449508653|ref|XP_004163373.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] gi|449521770|ref|XP_004167902.1| PREDICTED: 40S ribosomal protein S23-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297741557|emb|CBI32689.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356537485|ref|XP_003537257.1| PREDICTED: 40S ribosomal protein S23-like isoform 1 [Glycine max] gi|388520283|gb|AFK48203.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|388521427|gb|AFK48775.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224069336|ref|XP_002326333.1| predicted protein [Populus trichocarpa] gi|224098071|ref|XP_002311115.1| predicted protein [Populus trichocarpa] gi|224112945|ref|XP_002316341.1| predicted protein [Populus trichocarpa] gi|224140159|ref|XP_002323452.1| predicted protein [Populus trichocarpa] gi|118483731|gb|ABK93759.1| unknown [Populus trichocarpa] gi|118484067|gb|ABK93919.1| unknown [Populus trichocarpa] gi|118487579|gb|ABK95615.1| unknown [Populus trichocarpa] gi|222833526|gb|EEE72003.1| predicted protein [Populus trichocarpa] gi|222850935|gb|EEE88482.1| predicted protein [Populus trichocarpa] gi|222865381|gb|EEF02512.1| predicted protein [Populus trichocarpa] gi|222868082|gb|EEF05213.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224155202|ref|XP_002337575.1| predicted protein [Populus trichocarpa] gi|222839593|gb|EEE77930.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255565826|ref|XP_002523902.1| 40S ribosomal protein S23, putative [Ricinus communis] gi|255568414|ref|XP_002525181.1| 40S ribosomal protein S23, putative [Ricinus communis] gi|223535478|gb|EEF37147.1| 40S ribosomal protein S23, putative [Ricinus communis] gi|223536832|gb|EEF38471.1| 40S ribosomal protein S23, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|1173187|sp|P46297.1|RS23_FRAAN RecName: Full=40S ribosomal protein S23; AltName: Full=S12 gi|643074|gb|AAA79921.1| putative 40S ribosomal protein s12 [Fragaria x ananassa] Back     alignment and taxonomy information
>gi|363808292|ref|NP_001242498.1| uncharacterized protein LOC100776345 [Glycine max] gi|255639078|gb|ACU19839.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query136
TAIR|locus:2151301142 AT5G02960 [Arabidopsis thalian 1.0 0.957 0.963 3.6e-66
TAIR|locus:2074954142 AT3G09680 [Arabidopsis thalian 1.0 0.957 0.941 9.7e-64
FB|FBgn0033912143 RpS23 "Ribosomal protein S23" 0.970 0.923 0.827 2.5e-56
UNIPROTKB|F1NDC2145 RPS23 "Uncharacterized protein 0.970 0.910 0.819 6.8e-56
UNIPROTKB|E1BEQ3143 E1BEQ3 "Uncharacterized protei 0.970 0.923 0.819 6.8e-56
UNIPROTKB|Q3T199143 RPS23 "40S ribosomal protein S 0.970 0.923 0.819 6.8e-56
UNIPROTKB|J9NZX6143 RPS23 "Uncharacterized protein 0.970 0.923 0.819 6.8e-56
UNIPROTKB|P62266143 RPS23 "40S ribosomal protein S 0.970 0.923 0.819 6.8e-56
UNIPROTKB|F2Z512143 RPS23 "40S ribosomal protein S 0.970 0.923 0.819 6.8e-56
MGI|MGI:1913725143 Rps23 "ribosomal protein S23" 0.970 0.923 0.819 6.8e-56
TAIR|locus:2151301 AT5G02960 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 673 (242.0 bits), Expect = 3.6e-66, P = 3.6e-66
 Identities = 131/136 (96%), Positives = 131/136 (96%)

Query:     1 MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
             MGAGRKLK  R  QRWADK YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct:     7 MGAGRKLKRLRINQRWADKQYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66

Query:    61 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
             KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct:    67 KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126

Query:   121 VSLLALFKEKKEKPRS 136
             VSLLALFKEKKEKPRS
Sbjct:   127 VSLLALFKEKKEKPRS 142
GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS
GO:0005622 "intracellular" evidence=IEA
GO:0005737 "cytoplasm" evidence=ISM
GO:0005840 "ribosome" evidence=IEA;ISS
GO:0006412 "translation" evidence=IEA;ISS
GO:0015935 "small ribosomal subunit" evidence=IEA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0022627 "cytosolic small ribosomal subunit" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
TAIR|locus:2074954 AT3G09680 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
FB|FBgn0033912 RpS23 "Ribosomal protein S23" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
UNIPROTKB|F1NDC2 RPS23 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEQ3 E1BEQ3 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q3T199 RPS23 "40S ribosomal protein S23" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|J9NZX6 RPS23 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P62266 RPS23 "40S ribosomal protein S23" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|F2Z512 RPS23 "40S ribosomal protein S23" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
MGI|MGI:1913725 Rps23 "ribosomal protein S23" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
B0R8D1RS12_HALS3No assigned EC number0.55970.97050.9295yesno
Q8ZYQ4RS12_PYRAENo assigned EC number0.58200.97050.8979yesno
P79057RS23_SCHPONo assigned EC number0.74451.00.9510yesno
Q6EV23RS23_PAPDANo assigned EC number0.80.98520.9370N/Ano
Q90YQ1RS23_ICTPUNo assigned EC number0.80.98520.9370N/Ano
P49201RS232_ARATHNo assigned EC number0.96321.00.9577yesno
Q5UZR8RS12_HALMANo assigned EC number0.55970.97050.9295yesno
Q6L0R4RS12_PICTONo assigned EC number0.55550.97790.9366yesno
Q19877RS23_CAEELNo assigned EC number0.76641.00.9510yesno
Q3IUM8RS12_NATPDNo assigned EC number0.55970.97050.9295yesno
O27129RS12_METTHNo assigned EC number0.56710.97050.9361yesno
P11524RS12_SULACNo assigned EC number0.55220.97050.8979yesno
Q8TXJ2RS12_METKANo assigned EC number0.59700.97050.8979yesno
Q8T3U2RS23_DROMENo assigned EC number0.81480.98520.9370yesno
Q9DFR4RS23_GILMINo assigned EC number0.74810.98520.9370N/Ano
P46297RS23_FRAANNo assigned EC number0.98521.00.9577N/Ano
Q8SR65RS23_ENCCUNo assigned EC number0.61240.94110.9142yesno
P62266RS23_HUMANNo assigned EC number0.80740.98520.9370yesno
P62267RS23_MOUSENo assigned EC number0.80740.98520.9370yesno
Q873W8RS23_ASPFUNo assigned EC number0.78101.00.9379yesno
Q97CD8RS12_THEVONo assigned EC number0.57030.97790.9366yesno
Q9GRJ3RS23_LUMRUNo assigned EC number0.81021.00.9510N/Ano
Q55A19RS23_DICDINo assigned EC number0.70370.98520.9370yesno
Q86FP7RS23_DERVANo assigned EC number0.81021.00.9510N/Ano
P0CX29RS23A_YEASTNo assigned EC number0.77371.00.9379yesno
P62268RS23_RATNo assigned EC number0.80740.98520.9370yesno
P0CX00RS12_HALSANo assigned EC number0.55970.97050.9295yesno
Q9SF35RS231_ARATHNo assigned EC number0.94111.00.9577yesno
Q9M5Z9RS23_EUPESNo assigned EC number0.98521.00.9577N/Ano
P90707RS23_BRUMANo assigned EC number0.80.98520.9370N/Ano
Q8I7D5RS23_CIOINNo assigned EC number0.79690.97050.9230yesno
Q18EX9RS12_HALWDNo assigned EC number0.56710.97050.9295yesno
P62298RS23_CHILANo assigned EC number0.80740.98520.9370N/Ano
Q9HE74RS23_NEUCRNo assigned EC number0.77371.00.9379N/Ano
Q6YIA3RS23_SACBANo assigned EC number0.77371.00.9379N/Ano
P06147RS12_TETTHNo assigned EC number0.73280.96320.9225N/Ano
A3MXZ4RS12_PYRCJNo assigned EC number0.58950.97050.8979yesno
Q962Q7RS23_SPOFRNo assigned EC number0.80.98520.9370N/Ano
P0CY40RS23B_NAUCCNo assigned EC number0.77371.00.9379yesno
A0RUR2RS12_CENSYNo assigned EC number0.61480.97790.9172yesno
Q0W8G5RS12_UNCMANo assigned EC number0.55970.97050.9295yesno
Q6SA96RS23_PIGNo assigned EC number0.80.98520.9370yesno
A8A929RS12_IGNH4No assigned EC number0.55970.97050.8979yesno
Q3T199RS23_BOVINNo assigned EC number0.80740.98520.9370yesno
P0CY39RS23A_NAUCCNo assigned EC number0.77371.00.9379yesno
Q6FLA8RS23_CANGANo assigned EC number0.77371.00.9379yesno
Q9HLY2RS12_THEACNo assigned EC number0.57030.97790.9366yesno
P0CX30RS23B_YEASTNo assigned EC number0.77371.00.9379yesno
A3DMP8RS12_STAMFNo assigned EC number0.56710.97050.8979yesno
Q2NEK8RS12_METSTNo assigned EC number0.57460.97050.9361yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query136
PTZ00067143 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional 2e-84
cd03367115 cd03367, Ribosomal_S23, S12-like family, 40S ribos 2e-72
PRK04211145 PRK04211, rps12P, 30S ribosomal protein S12P; Revi 5e-59
TIGR00982139 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12 5e-50
pfam00164122 pfam00164, Ribosomal_S12, Ribosomal protein S12 3e-41
COG0048129 COG0048, RpsL, Ribosomal protein S12 [Translation, 4e-41
cd0031995 cd00319, Ribosomal_S12_like, Ribosomal protein S12 4e-37
cd03368108 cd03368, Ribosomal_S12, S12-like family, 30S ribos 7e-12
CHL00051123 CHL00051, rps12, ribosomal protein S12 2e-10
PRK05163124 PRK05163, rpsL, 30S ribosomal protein S12; Validat 8e-09
TIGR00981124 TIGR00981, rpsL_bact, ribosomal protein S12, bacte 5e-08
PTZ00115290 PTZ00115, PTZ00115, 40S ribosomal protein S12; Pro 8e-04
>gnl|CDD|185422 PTZ00067, PTZ00067, 40S ribosomal S23; Provisional Back     alignment and domain information 
 Score =  242 bits (620), Expect = 2e-84
 Identities = 109/137 (79%), Positives = 121/137 (88%), Gaps = 1/137 (0%)

Query: 1   MGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAI 59
           + A RKL+ HRR  RWADK YKK+HLG  +K  PF G+SHAKGIV+EKIGIEAKQPNSAI
Sbjct: 7   LRAARKLRRHRRVNRWADKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAKQPNSAI 66

Query: 60  RKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVS 119
           RKC RVQLIKNGKKI AFVPNDGCLN+I ENDEVL++GFGR GHAVGDIPGVRFKVVKV+
Sbjct: 67  RKCVRVQLIKNGKKITAFVPNDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRFKVVKVA 126

Query: 120 GVSLLALFKEKKEKPRS 136
           GVSLLAL+K KKEKPR+
Sbjct: 127 GVSLLALYKGKKEKPRN 143

Length = 143
>gnl|CDD|239465 cd03367, Ribosomal_S23, S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center Back     alignment and domain information
>gnl|CDD|235257 PRK04211, rps12P, 30S ribosomal protein S12P; Reviewed Back     alignment and domain information
>gnl|CDD|130055 TIGR00982, S23_S12_E_A, ribosomal protein S23 (S12) Back     alignment and domain information
>gnl|CDD|201049 pfam00164, Ribosomal_S12, Ribosomal protein S12 Back     alignment and domain information
>gnl|CDD|223126 COG0048, RpsL, Ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|238196 cd00319, Ribosomal_S12_like, Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins Back     alignment and domain information
>gnl|CDD|239466 cd03368, Ribosomal_S12, S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions Back     alignment and domain information
>gnl|CDD|176992 CHL00051, rps12, ribosomal protein S12 Back     alignment and domain information
>gnl|CDD|235355 PRK05163, rpsL, 30S ribosomal protein S12; Validated Back     alignment and domain information
>gnl|CDD|130054 TIGR00981, rpsL_bact, ribosomal protein S12, bacterial/organelle Back     alignment and domain information
>gnl|CDD|240276 PTZ00115, PTZ00115, 40S ribosomal protein S12; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 136
PTZ00067143 40S ribosomal S23; Provisional 100.0
TIGR00982139 S23_S12_E_A ribosomal protein S23 (S12). This mode 100.0
PRK04211145 rps12P 30S ribosomal protein S12P; Reviewed 100.0
KOG1749143 consensus 40S ribosomal protein S23 [Translation, 100.0
cd03367115 Ribosomal_S23 S12-like family, 40S ribosomal prote 100.0
COG0048129 RpsL Ribosomal protein S12 [Translation, ribosomal 100.0
PF00164122 Ribosom_S12_S23: Ribosomal protein S12/S23; InterP 100.0
cd0031995 Ribosomal_S12_like Ribosomal protein S12-like fami 100.0
cd03368108 Ribosomal_S12 S12-like family, 30S ribosomal prote 100.0
PRK05163124 rpsL 30S ribosomal protein S12; Validated 100.0
CHL00051123 rps12 ribosomal protein S12 100.0
TIGR00981124 rpsL_bact ribosomal protein S12, bacterial/organel 100.0
PTZ00115290 40S ribosomal protein S12; Provisional 100.0
KOG1750139 consensus Mitochondrial/chloroplast ribosomal prot 99.97
TIGR0000868 infA translation initiation factor IF-1. This fami 94.32
COG036175 InfA Translation initiation factor 1 (IF-1) [Trans 92.73
PRK1244287 translation initiation factor IF-1; Reviewed 86.24
smart0065283 eIF1a eukaryotic translation initiation factor 1A. 84.21
cd0445678 S1_IF1A_like S1_IF1A_like: Translation initiation 81.93
>PTZ00067 40S ribosomal S23; Provisional Back     alignment and domain information 
Probab=100.00  E-value=3e-72  Score=432.80  Aligned_cols=136  Identities=80%  Similarity=1.298  Sum_probs=134.3

Q ss_pred             CchhhhhHhhhhhccccchhhhhhccCCccc-CCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeC
Q 032641            1 MGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP   79 (136)
Q Consensus         1 l~~arkl~~~r~~~rw~d~~ykk~~lg~~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IP   79 (136)
                      |||||||+++|+.+||+|++|+++|||+.+| |||+++||++|||++++++||||||||+||||+|||++||++||||||
T Consensus         7 l~aarkl~~~r~~~rw~d~~y~k~~lg~~~k~~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rV~L~kngk~vtAyiP   86 (143)
T PTZ00067          7 LRAARKLRRHRRVNRWADKEYKKAHLGTRYKANPFGGASHAKGIVVEKIGIEAKQPNSAIRKCVRVQLIKNGKKITAFVP   86 (143)
T ss_pred             hHHHHHHHHHHHHhhhhhHHHHHHhcCCccccCcccCCCccceEEEEEEeecCCCCChhhceEEEEEEccCCcEEEEEeC
Confidence            6999999999999999999999999999999 999999999999999999999999999999999999889999999999


Q ss_pred             CCCccCcccccCeEEEeeecCCCCcCCCCCCceEEEEEecChhHHHHhhhhccCCCC
Q 032641           80 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  136 (136)
Q Consensus        80 g~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGVrykvvrv~~vsl~al~~gkkekp~~  136 (136)
                      ||||||||||||+|||+|||++||+++|||||+|+||+||||||+|||+||||||++
T Consensus        87 g~G~lh~lqEh~~VLV~G~Gr~g~~v~DlPGVrykvVrV~~vsL~~l~kgkkekp~r  143 (143)
T PTZ00067         87 NDGCLNFINENDEVLVSGFGRSGHAVGDIPGVRFKVVKVAGVSLLALYKGKKEKPRN  143 (143)
T ss_pred             CCCcccccccCCEEEEEecCcCCCccCCCCceEEEEEEECCEeHHHHHhcccccCCC
Confidence            999999999999999999999999999999999999999999999999999999985

>TIGR00982 S23_S12_E_A ribosomal protein S23 (S12) Back     alignment and domain information
>PRK04211 rps12P 30S ribosomal protein S12P; Reviewed Back     alignment and domain information
>KOG1749 consensus 40S ribosomal protein S23 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>cd03367 Ribosomal_S23 S12-like family, 40S ribosomal protein S23 subfamily; S23 is located at the interface of the large and small ribosomal subunits of eukaryotes, adjacent to the decoding center Back     alignment and domain information
>COG0048 RpsL Ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF00164 Ribosom_S12_S23: Ribosomal protein S12/S23; InterPro: IPR006032 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms Back     alignment and domain information
>cd00319 Ribosomal_S12_like Ribosomal protein S12-like family; composed of prokaryotic 30S ribosomal protein S12, eukaryotic 40S ribosomal protein S23 and similar proteins Back     alignment and domain information
>cd03368 Ribosomal_S12 S12-like family, 30S ribosomal protein S12 subfamily; S12 is located at the interface of the large and small ribosomal subunits of prokaryotes, chloroplasts and mitochondria, where it plays an important role in both tRNA and ribosomal subunit interactions Back     alignment and domain information
>PRK05163 rpsL 30S ribosomal protein S12; Validated Back     alignment and domain information
>CHL00051 rps12 ribosomal protein S12 Back     alignment and domain information
>TIGR00981 rpsL_bact ribosomal protein S12, bacterial/organelle Back     alignment and domain information
>PTZ00115 40S ribosomal protein S12; Provisional Back     alignment and domain information
>KOG1750 consensus Mitochondrial/chloroplast ribosomal protein S12 [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00008 infA translation initiation factor IF-1 Back     alignment and domain information
>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12442 translation initiation factor IF-1; Reviewed Back     alignment and domain information
>smart00652 eIF1a eukaryotic translation initiation factor 1A Back     alignment and domain information
>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query136
3iz6_L142 Localization Of The Small Subunit Ribosomal Protein 7e-73
2zkq_l143 Structure Of A Mammalian Ribosomal 40s Subunit With 7e-60
3izb_L145 Localization Of The Small Subunit Ribosomal Protein 5e-57
3j2k_X144 Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associ 6e-57
3zey_S143 High-resolution Cryo-electron Microscopy Structure 1e-52
2xzm_L142 Crystal Structure Of The Eukaryotic 40s Ribosomal S 2e-52
3j0l_L141 Core Of Mammalian 80s Pre-Ribosome In Complex With 3e-52
1s1h_L118 Structure Of The Ribosomal 80s-Eef2-Sordarin Comple 1e-50
3j20_N147 Promiscuous Behavior Of Proteins In Archaeal Riboso 8e-33
3bbn_L123 Homology Model For The Spinach Chloroplast 30s Subu 2e-07
4g5k_O128 Crystal Structure Of The 70s Ribosome With Tetracyc 2e-07
2f4v_L132 30s Ribosome + Designer Antibiotic Length = 132 2e-07
3fic_L125 T. Thermophilus 70s Ribosome In Complex With Mrna, 2e-07
1pn7_O124 Coordinates Of S12, L11 Proteins And P-Trna, From T 3e-07
1i94_L131 Crystal Structures Of The Small Ribosomal Subunit W 3e-07
3d5a_L134 Structural Basis For Translation Termination On The 3e-07
1fjg_L135 Structure Of The Thermus Thermophilus 30s Ribosomal 3e-07
4dr1_L135 Crystal Structure Of The Apo 30s Ribosomal Subunit 3e-06
1zn1_L97 Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 7 2e-05
2gy9_L101 Structure Of The 30s Subunit Of A Pre-Translocation 2e-05
1vs5_L124 Crystal Structure Of The Bacterial Ribosome From Es 3e-05
1p6g_L123 Real Space Refined Coordinates Of The 30s Subunit F 3e-05
>pdb|3IZ6|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 142 Back     alignment and structure 
Iteration: 1

 Score =  268 bits (685), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 131/136 (96%), Positives = 135/136 (99%)
Query: 1   MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           MGAGRKLK+HRR QRWADK+YKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR
Sbjct: 7   MGAGRKLKTHRRNQRWADKAYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 66
Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KCARVQL+KNGKKIAAFVPNDGCLN+IEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG
Sbjct: 67  KCARVQLVKNGKKIAAFVPNDGCLNFIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 126
Query: 121 VSLLALFKEKKEKPRS 136
           VSLLALFKEKKEKPRS
Sbjct: 127 VSLLALFKEKKEKPRS 142
>pdb|2ZKQ|LL Chain l, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 143 Back     alignment and structure
>pdb|3IZB|L Chain L, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 145 Back     alignment and structure
>pdb|3J2K|X Chain X, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated Termination Complex Length = 144 Back     alignment and structure
>pdb|3ZEY|S Chain S, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 143 Back     alignment and structure
>pdb|2XZM|L Chain L, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 142 Back     alignment and structure
>pdb|3J0L|L Chain L, Core Of Mammalian 80s Pre-Ribosome In Complex With Trnas Fitted To A 9.8a Cryo-Em Map: Classic Pre State 1 Length = 141 Back     alignment and structure
>pdb|1S1H|L Chain L, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is In File 1s1i. Length = 118 Back     alignment and structure
>pdb|3J20|N Chain N, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (30s Ribosomal Subunit) Length = 147 Back     alignment and structure
>pdb|3BBN|L Chain L, Homology Model For The Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 123 Back     alignment and structure
>pdb|4G5K|O Chain O, Crystal Structure Of The 70s Ribosome With Tetracycline. This Entry Contains The 30s Subunit Of Molecule A. Length = 128 Back     alignment and structure
>pdb|2F4V|L Chain L, 30s Ribosome + Designer Antibiotic Length = 132 Back     alignment and structure
>pdb|3FIC|L Chain L, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A 6.4 A Cryo-Em Map. This File Contains The 30s Subunit And The Ligands Length = 125 Back     alignment and structure
>pdb|1PN7|O Chain O, Coordinates Of S12, L11 Proteins And P-Trna, From The 70s X- Ray Structure Aligned To The 70s Cryo-Em Map Of E.Coli Ribosome Length = 124 Back     alignment and structure
>pdb|1I94|L Chain L, Crystal Structures Of The Small Ribosomal Subunit With Tetracycline, Edeine And If3 Length = 131 Back     alignment and structure
>pdb|3D5A|L Chain L, Structural Basis For Translation Termination On The 70s Ribosome. This File Contains The 30s Subunit, Release Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes As Described In Remark 400. Length = 134 Back     alignment and structure
>pdb|1FJG|L Chain L, Structure Of The Thermus Thermophilus 30s Ribosomal Subunit In Complex With The Antibiotics Streptomycin, Spectinomycin, And Paromomycin Length = 135 Back     alignment and structure
>pdb|4DR1|L Chain L, Crystal Structure Of The Apo 30s Ribosomal Subunit From Thermus Thermophilus (hb8) Length = 135 Back     alignment and structure
>pdb|1ZN1|L Chain L, Coordinates Of Rrf Fitted Into Cryo-Em Map Of The 70s Post- Termination Complex Length = 97 Back     alignment and structure
>pdb|2GY9|L Chain L, Structure Of The 30s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 101 Back     alignment and structure
>pdb|1VS5|L Chain L, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 30s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 124 Back     alignment and structure
>pdb|1P6G|L Chain L, Real Space Refined Coordinates Of The 30s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 123 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query136
2xzm_L142 40S ribosomal protein S12; ribosome, translation; 2e-46
3u5c_X145 RP37, S28, YS14, 40S ribosomal protein S23-A; tran 3e-44
2vqe_L135 30S ribosomal protein S12, 30S ribosomal protein S 3e-08
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Length = 142 Back     alignment and structure
 Score =  145 bits (368), Expect = 2e-46
 Identities = 96/133 (72%), Positives = 110/133 (82%)

Query: 1   MGAGRKLKSHRRRQRWADKSYKKSHLGNEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIR 60
           + AGRKL  HR+ QRWAD  + K  LG+ W+ PF G+SHAKG+V EKIGIE+KQPNSA+R
Sbjct: 9   IRAGRKLARHRKDQRWADNDFNKRLLGSRWRNPFMGASHAKGLVTEKIGIESKQPNSAVR 68

Query: 61  KCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSG 120
           KC RV L KN KKIAAFVP DGCLN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G
Sbjct: 69  KCVRVLLRKNSKKIAAFVPMDGCLNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKG 128

Query: 121 VSLLALFKEKKEK 133
           +SLLALFK KKEK
Sbjct: 129 ISLLALFKGKKEK 141
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Length = 145 Back     alignment and structure
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Length = 135 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query136
3u5c_X145 RP37, S28, YS14, 40S ribosomal protein S23-A; tran 100.0
2xzm_L142 40S ribosomal protein S12; ribosome, translation; 100.0
3j20_N147 30S ribosomal protein S12P; archaea, archaeal, KIN 100.0
2vqe_L135 30S ribosomal protein S12, 30S ribosomal protein S 100.0
>3u5c_X RP37, S28, YS14, 40S ribosomal protein S23-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_L 3o30_P 3o2z_P 3u5g_X 3j2k_X 3jyv_L* 1s1h_L* 2zkq_l 3iz6_L Back     alignment and structure
Probab=100.00  E-value=5.4e-74  Score=442.18  Aligned_cols=136  Identities=78%  Similarity=1.266  Sum_probs=134.6

Q ss_pred             CchhhhhHhhhhhccccchhhhhhccCCccc-CCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeC
Q 032641            1 MGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVP   79 (136)
Q Consensus         1 l~~arkl~~~r~~~rw~d~~ykk~~lg~~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IP   79 (136)
                      |||||||+++|++|||+|++|+++|||+++| |||+|+||++|||++++++||||||||+||||||||++||++||||||
T Consensus         9 l~aarkl~~~r~~~rw~dk~ykk~~lg~~~K~~~l~g~pq~kGivl~~~~~~pKkPNSA~RK~arV~L~kngk~vtAyIP   88 (145)
T 3u5c_X            9 LNSARKLRVHRRNNRWAENNYKKRLLGTAFKSSPFGGSSHAKGIVLEKLGIESKQPNSAIRKCVRVQLIKNGKKVTAFVP   88 (145)
T ss_dssp             SSCHHHHHHHHHHHHTTSHHHHHHHHTHHHHSSSSCSSSEEEEEEEEEEBCBCCTTCCCBCCEEEEEETTTCCEEEEECC
T ss_pred             HHHHHHHHHHHHHhhhhhhHHHHHhcCcccccCccCCCCccCeEEEEEeecccCCCCccceeEEEEEEccCCCEEEEEeC
Confidence            7999999999999999999999999999999 999999999999999999999999999999999999999999999999


Q ss_pred             CCCccCcccccCeEEEeeecCCCCcCCCCCCceEEEEEecChhHHHHhhhhccCCCC
Q 032641           80 NDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS  136 (136)
Q Consensus        80 g~G~l~~lqeh~~VLV~G~G~~gg~v~DlPGVrykvvrv~~vsl~al~~gkkekp~~  136 (136)
                      ||||||||||||+|||+|||++||+++|||||+|+||||+||||+|||+||||||++
T Consensus        89 g~G~l~~lqEh~~VLV~G~G~~Gg~v~DlPGVrykvVrv~~vsl~al~kgkkekp~~  145 (145)
T 3u5c_X           89 NDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS  145 (145)
T ss_dssp             SSSCGGGCCTTCEEEEECCSSSSSCCSSSTTCCEEEEESTTTCHHHHHHTSCCCCCC
T ss_pred             CCCccccCCcCCEEEEEeccccCCccCCCCceeEEEEEECCeeHHHHHhccccCCCC
Confidence            999999999999999999999999999999999999999999999999999999986
>2xzm_L 40S ribosomal protein S12; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_L 3j0o_L 3j0l_L 3j0p_L 3j0q_L 3iz6_L 3jyv_L* 1s1h_L* Back     alignment and structure
>3j20_N 30S ribosomal protein S12P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} Back     alignment and structure
>2vqe_L 30S ribosomal protein S12, 30S ribosomal protein S6; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: i.1.1.1 PDB: 1gix_O* 1hnw_L* 1hnx_L* 1hnz_L* 1hr0_L 1ibk_L* 1ibl_L* 1ibm_L 1j5e_L 1jgo_O* 1jgp_O* 1jgq_O* 1mj1_O* 1ml5_O* 1mvr_O 1n32_L* 1n33_L* 1n34_L 1n36_L 1xmo_L* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 136
d2uubl1118 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus 1e-19
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Length = 118 Back     information, alignment and structure

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

 Score = 75.9 bits (187), Expect = 1e-19
 Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 11/104 (10%)

Query: 33  PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDE 92
              G+   +G+      +  K+PNSA+RK A+V+ + +G ++ A++P +G  + ++E+  
Sbjct: 22  ALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVR-LTSGYEVTAYIPGEG--HNLQEHSV 78

Query: 93  VLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 136
           VLI     +G  V D+PGVR+ +V+  GV   A  K++K+  RS
Sbjct: 79  VLI-----RGGRVKDLPGVRYHIVR--GVYDAAGVKDRKKS-RS 114

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query136
d2uubl1118 Ribosomal protein S12 {Thermus thermophilus [TaxId 100.0
d1ah9a_71 Translational initiation factor 1, IF1 {Escherichi 88.76
>d2uubl1 b.40.4.5 (L:5-122) Ribosomal protein S12 {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Ribosomal protein S12
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=7.5e-45  Score=270.68  Aligned_cols=96  Identities=35%  Similarity=0.631  Sum_probs=89.0

Q ss_pred             ccc-CCCCCCCCccceEEeeeeecccCCCcccceEEEEEEecCCcEEEEEeCCCCccCcccccCeEEEeeecCCCCcCCC
Q 032641           29 EWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGD  107 (136)
Q Consensus        29 ~~k-~pl~g~pq~kGivl~~~~~~pKkPNSA~RK~~rVqLikngk~v~A~IPg~G~l~~lqeh~~VLV~G~G~~gg~v~D  107 (136)
                      +.| ++|+++||++|||+++++++|||||||+||||+|+| +||++||||||||||  ||||||+|||+|     |+++|
T Consensus        17 k~k~~aL~~~PqkkGvc~kv~~~~PKKPNSA~RKvarVrL-sng~~v~AyIPG~Gh--nlqEHs~VLvrG-----Grv~D   88 (118)
T d2uubl1          17 KSKVPALKGAPFRRGVCTVVRTVTPKKPNSALRKVAKVRL-TSGYEVTAYIPGEGH--NLQEHSVVLIRG-----GRVKD   88 (118)
T ss_dssp             CCSCCCTTTCSCEEEEEEEEEEECCCTTCCSCEEEEEEEE-TTSCEEEEECCSSCC--CCCTTCEEEECC-----CCCTT
T ss_pred             CCCCcccccCCccceEEEEEEEeccCCCcceeeeEEEEEe-cCCeEEEEEcCCCCc--CcccCCEEEEeC-----Ccccc
Confidence            345 679999999999999999999999999999999999 899999999999997  999999999999     88999


Q ss_pred             CCCceEEEEEecChhHHHHhhhhccCC
Q 032641          108 IPGVRFKVVKVSGVSLLALFKEKKEKP  134 (136)
Q Consensus       108 lPGVrykvvrv~~vsl~al~~gkkekp  134 (136)
                      ||||+|+|||  |+.-.+-+.|+++..
T Consensus        89 lPGVry~vvr--G~~D~~~v~~Rk~~R  113 (118)
T d2uubl1          89 LPGVRYHIVR--GVYDAAGVKDRKKSR  113 (118)
T ss_dssp             STTCCEEBCT--TSTTCCCCTTCCSST
T ss_pred             CCCcEEEEEe--eeecccccccccccc
Confidence            9999999987  777778888888764
>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Back     information, alignment and structure