Citrus Sinensis ID: 032686

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130------
Protein Sequence
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLRLRFQKSKVL
Secondary Structure (PSIPRED)
cccccEEEEEEEcccEEEEEEEcccccHHHHHHHHHccccccccEEEEEEccEEEEEEEEccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccccccEEEEcccEEEEEEEcccEEEEEEEccccccccHHHHHHHHHHHHHHHHccccHcHHHHHHHHHHcccEEEEcccccccccEEEHHHHHHcc
Coil and Loop (DISEMBL)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLqklpasnnkftyncdahtfnylvdngYTYCVVadessgrqipmAFLERVKDEfvskygggkaatapanglnkeFGTVLIILRRSASLRRLRLRFQKSKVL
Flexible Loop (DISEMBL)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGgkaatapanglnkeFGTVLIILRRSaslrrlrlrfqkskvl
Low Complexity Region (SEG)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVliilrrsaslrrlrlrFQKSKVL
Disordered region (IsUnstruct)
*****LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLR*********
Disordered Region (DISOPRED)
**QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG******APANGLNKEFGTVL****************Q*SKVL
Disordered Region (DISEMBL)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLRLRFQKSKVL
Disordered Region (DISPRO)
**QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLRLRFQKS***
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLRRLRLRFQKSKVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	136	2.2.26 [Sep-21-2011]
Q9MAS5	220	Putative vesicle-associat	yes	no	0.838	0.518	0.771	6e-50
P47192	221	Vesicle-associated membra	no	no	0.838	0.515	0.763	3e-49
Q9ZTW3	219	Vesicle-associated membra	no	no	0.838	0.520	0.745	1e-48
O48850	285	Vesicle-associated membra	no	no	0.838	0.4	0.745	3e-48
Q8VY69	217	Vesicle-associated membra	no	no	0.838	0.525	0.675	2e-42
O23429	222	Vesicle-associated membra	no	no	0.838	0.513	0.686	3e-42
Q9M376	240	Vesicle-associated membra	no	no	0.683	0.387	0.655	3e-34
Q86AQ7	260	Vesicle-associated membra	yes	no	0.794	0.415	0.440	1e-19
O49377	219	Vesicle-associated membra	no	no	0.801	0.497	0.423	2e-17
Q9LFP1	221	Vesicle-associated membra	no	no	0.801	0.493	0.410	6e-17

>sp|Q9MAS5|VA726_ARATH Putative vesicle-associated membrane protein 726 OS=Arabidopsis thaliana GN=VAMP726 PE=3 SV=2

 Score =  195 bits (496), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 88/114 (77%), Positives = 100/114 (87%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL D
Sbjct: 1   MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG+ L
Sbjct: 61  NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGSKL 114

Involved in the targeting and/or fusion of transport vesicles to their target membrane.
Arabidopsis thaliana (taxid: 3702)

>sp|P47192|VA722_ARATH Vesicle-associated membrane protein 722 OS=Arabidopsis thaliana GN=VAMP722 PE=2 SV=2

 Score =  192 bits (489), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 87/114 (76%), Positives = 102/114 (89%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct: 1   MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NG+TYCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG+ L
Sbjct: 61  NGFTYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKL 114

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ZTW3|VA721_ARATH Vesicle-associated membrane protein 721 OS=Arabidopsis thaliana GN=VAMP721 PE=1 SV=1

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 102/114 (89%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct: 1   MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           +G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG+ L
Sbjct: 61  DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGSKL 114

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O48850|VA725_ARATH Vesicle-associated membrane protein 725 OS=Arabidopsis thaliana GN=VAMP725 PE=2 SV=2

 Score =  190 bits (482), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 85/114 (74%), Positives = 99/114 (86%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct: 66  MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 125

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG+ L
Sbjct: 126 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGSKL 179

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VY69|VA723_ARATH Vesicle-associated membrane protein 723 OS=Arabidopsis thaliana GN=VAMP723 PE=2 SV=1

 Score =  170 bits (431), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 96/114 (84%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+
Sbjct: 1   MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG+ L
Sbjct: 61  NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGSNL 114

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|O23429|VA724_ARATH Vesicle-associated membrane protein 724 OS=Arabidopsis thaliana GN=VAMP724 PE=2 SV=2

 Score =  170 bits (430), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 79/115 (68%), Positives = 96/115 (83%), Gaps = 1/115 (0%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNN-KFTYNCDAHTFNYLV 59
           M Q+S IY+FVARG ++LAEYTEF+GNF SIA QCLQKLP+S+N KFTYNCD HTFN+LV
Sbjct: 1   MGQESFIYSFVARGTMILAEYTEFTGNFPSIAAQCLQKLPSSSNSKFTYNCDHHTFNFLV 60

Query: 60  DNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           ++GY YCVVA +S  +QI +AFLERVK +F  +YGGGKA+TA A  LNKEFG V+
Sbjct: 61  EDGYAYCVVAKDSLSKQISIAFLERVKADFKKRYGGGKASTAIAKSLNKEFGPVM 115

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M376|VA727_ARATH Vesicle-associated membrane protein 727 OS=Arabidopsis thaliana GN=VAMP727 PE=2 SV=1

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query: 1  MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
          MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVD
Sbjct: 1  MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query: 61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93
          NG+ + VVADES+GR +P  FLERVK++F  +Y
Sbjct: 61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRY 93

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q86AQ7|VAM7B_DICDI Vesicle-associated membrane protein 7B OS=Dictyostelium discoideum GN=vamp7B PE=3 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 48/109 (44%), Positives = 69/109 (63%), Gaps = 1/109 (0%)

Query: 6   LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTY 65
           +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY
Sbjct: 3   IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTY 62

Query: 66  CVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
             +ADE  GR+IP  FL+ VK+ F S Y G K  TA A G+N +F   L
Sbjct: 63  LCMADEEFGRRIPFTFLDDVKNRFKSMY-GDKGKTAIAYGMNSDFSRTL 110

Involved in the targeting and/or fusion of transport vesicles to their target membrane during transport of proteins from the early endosome to the lysosome. Required for heterotypic fusion of late endosomes with lysosomes and homotypic lysosomal fusion.

Dictyostelium discoideum (taxid: 44689)

>sp|O49377|VA711_ARATH Vesicle-associated membrane protein 711 OS=Arabidopsis thaliana GN=VAMP711 PE=2 SV=2

 Score = 87.8 bits (216), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 47/111 (42%), Positives = 70/111 (63%), Gaps = 2/111 (1%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGY 63
           +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G 
Sbjct: 2   AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61

Query: 64  TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF  VL
Sbjct: 62  TVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRVL 111

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFP1|VA713_ARATH Vesicle-associated membrane protein 713 OS=Arabidopsis thaliana GN=VAMP713 PE=2 SV=1

 Score = 85.9 bits (211), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 46/112 (41%), Positives = 69/112 (61%), Gaps = 3/112 (2%)

Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNG 62
           ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G
Sbjct: 2   AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61

Query: 63  YTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
            T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF  VL
Sbjct: 62  LTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRVL 112

Involved in the targeting and/or fusion of transport vesicles to their target membrane.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
356532974	221	PREDICTED: putative vesicle-associated m	0.838	0.515	0.903	3e-56
427199312	219	vesicle-associated membrane protein 72 [	0.838	0.520	0.877	8e-56
255638090	221	unknown [Glycine max]	0.838	0.515	0.894	1e-55
351727010	221	uncharacterized protein LOC100500089 [Gl	0.838	0.515	0.885	3e-55
224115526	221	predicted protein [Populus trichocarpa]	0.838	0.515	0.859	2e-54
224136560	219	predicted protein [Populus trichocarpa]	0.838	0.520	0.850	2e-53
356532978	232	PREDICTED: putative vesicle-associated m	0.838	0.491	0.816	2e-53
449455429	222	PREDICTED: putative vesicle-associated m	0.838	0.513	0.833	3e-53
388496790	226	unknown [Lotus japonicus]	0.830	0.5	0.831	1e-52
225423676	221	PREDICTED: putative vesicle-associated m	0.838	0.515	0.815	3e-52

>gi|356532974|ref|XP_003535044.1| PREDICTED: putative vesicle-associated membrane protein 726-like isoform 1 [Glycine max]

 Score =  222 bits (566), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 103/114 (90%), Positives = 108/114 (94%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NGYTYCVVADES GRQ+PMAFLERVKDEFVSKYGGGKAATAPAN LNKEFG  L
Sbjct: 61  NGYTYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKL 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|427199312|gb|AFY26886.1| vesicle-associated membrane protein 72 [Morella rubra]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 100/114 (87%), Positives = 108/114 (94%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           MSQK LIYAFV+RG VVLAEYTEFSGNFNSIAYQCLQKLPA+NNKFTYNCD HTFNYLVD
Sbjct: 1   MSQKPLIYAFVSRGTVVLAEYTEFSGNFNSIAYQCLQKLPATNNKFTYNCDGHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NGYTYCVVADES GRQ+PMAFLER+KD+F+S+YGGGKA+TAPANGLNKEFG  L
Sbjct: 61  NGYTYCVVADESVGRQVPMAFLERIKDDFLSRYGGGKASTAPANGLNKEFGPKL 114

Source: Morella rubra

Species: Morella rubra

Genus: Morella

Family: Myricaceae

Order: Fagales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255638090|gb|ACU19359.1| unknown [Glycine max]

 Score =  220 bits (561), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 102/114 (89%), Positives = 107/114 (93%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NGYTYCVVADE  GRQ+PMAFLERVKDEFVSKYGGGKAATAPAN LNKEFG  L
Sbjct: 61  NGYTYCVVADEPIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKEFGPKL 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727010|ref|NP_001236634.1| uncharacterized protein LOC100500089 [Glycine max] gi|255629069|gb|ACU14879.1| unknown [Glycine max]

 Score =  219 bits (558), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 101/114 (88%), Positives = 107/114 (93%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NGYTYCVVADES GRQ+PMAFLERVKDEFV+KYGGGKAATAP N LNKEFG  L
Sbjct: 61  NGYTYCVVADESFGRQLPMAFLERVKDEFVAKYGGGKAATAPVNSLNKEFGPKL 114

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224115526|ref|XP_002332156.1| predicted protein [Populus trichocarpa] gi|118481984|gb|ABK92923.1| unknown [Populus trichocarpa] gi|118485253|gb|ABK94486.1| unknown [Populus trichocarpa] gi|118487184|gb|ABK95420.1| unknown [Populus trichocarpa] gi|222875206|gb|EEF12337.1| predicted protein [Populus trichocarpa]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 98/114 (85%), Positives = 108/114 (94%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+QKSLIYAFV+RG V+LAE+TEFSGNFNSIA+QCLQKLPA+NNKFTYNCD HTFNYL D
Sbjct: 1   MNQKSLIYAFVSRGTVILAEFTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLAD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NG+TYCVVADES+GRQ+PMAFLERVKD+FVSKYGGGKAATA ANGLNKEFG  L
Sbjct: 61  NGFTYCVVADESAGRQVPMAFLERVKDDFVSKYGGGKAATAQANGLNKEFGPKL 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224136560|ref|XP_002322360.1| predicted protein [Populus trichocarpa] gi|222869356|gb|EEF06487.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 97/114 (85%), Positives = 108/114 (94%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           MSQKSLIYAFV+RG V+LA+YTEFSGNFNSIA+QCLQKLPA+NNKFTYNCD HTFNYLVD
Sbjct: 1   MSQKSLIYAFVSRGTVILADYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDGHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NG+TYCVVA ES+GRQ+P+AFLERVKD+FV+KYGGGKAATA ANGLNKEFG  L
Sbjct: 61  NGFTYCVVAAESAGRQVPIAFLERVKDDFVTKYGGGKAATAQANGLNKEFGPKL 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532978|ref|XP_003535046.1| PREDICTED: putative vesicle-associated membrane protein 726-like isoform 3 [Glycine max]

 Score =  213 bits (542), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 102/125 (81%), Positives = 108/125 (86%), Gaps = 11/125 (8%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFV+RG V+LAEYTEFSGNFNSIA+QCLQKLPA+NNKFTYNCDAHTFNYLVD
Sbjct: 1   MGQKSLIYAFVSRGTVILAEYTEFSGNFNSIAFQCLQKLPATNNKFTYNCDAHTFNYLVD 60

Query: 61  NGY-----------TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE 109
           NGY           +YCVVADES GRQ+PMAFLERVKDEFVSKYGGGKAATAPAN LNKE
Sbjct: 61  NGYSMFLVLSFAVLSYCVVADESIGRQLPMAFLERVKDEFVSKYGGGKAATAPANSLNKE 120

Query: 110 FGTVL 114
           FG  L
Sbjct: 121 FGPKL 125

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449455429|ref|XP_004145455.1| PREDICTED: putative vesicle-associated membrane protein 726-like [Cucumis sativus] gi|449516904|ref|XP_004165486.1| PREDICTED: putative vesicle-associated membrane protein 726-like [Cucumis sativus]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 95/114 (83%), Positives = 107/114 (93%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M+QKSLIYAFVARG V+LAEYTE+SGNFNSIA+QCLQKLP +NNKFTYNCD HTFNYLVD
Sbjct: 1   MAQKSLIYAFVARGTVILAEYTEYSGNFNSIAFQCLQKLPTANNKFTYNCDGHTFNYLVD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NGYTYCVVA ES+GRQ+P+AFLER+KD+FVSKY GGKA+TAPAN LNKEFG+ L
Sbjct: 61  NGYTYCVVATESAGRQVPIAFLERIKDDFVSKYAGGKASTAPANSLNKEFGSKL 114

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388496790|gb|AFK36461.1| unknown [Lotus japonicus]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 94/113 (83%), Positives = 106/113 (93%)

Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
           +QK LIYAFV+RG V+LAE+TEFSGNFNSIA+QCLQKLP+++NKFTYNCDAHTFN+LVDN
Sbjct: 9   NQKPLIYAFVSRGTVILAEFTEFSGNFNSIAFQCLQKLPSTSNKFTYNCDAHTFNFLVDN 68

Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           GYTYC+VADES GRQ+PMAFLERVKD+FVSKYG GKAATAPAN LNKEFG  L
Sbjct: 69  GYTYCIVADESVGRQVPMAFLERVKDDFVSKYGDGKAATAPANSLNKEFGPKL 121

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423676|ref|XP_002276767.1| PREDICTED: putative vesicle-associated membrane protein 726 isoform 1 [Vitis vinifera] gi|147857290|emb|CAN81365.1| hypothetical protein VITISV_015772 [Vitis vinifera] gi|297737980|emb|CBI27181.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (532), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 93/114 (81%), Positives = 106/114 (92%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
           M QKSLIYAFVARG V+LAEYTEFSGNFNSIA+QCLQKLPA++NKFTYNCDAHTF YL+D
Sbjct: 1   MGQKSLIYAFVARGTVILAEYTEFSGNFNSIAFQCLQKLPATSNKFTYNCDAHTFTYLLD 60

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           NGYTYCVVADES GRQ+PMAFLER++D+FV++YGG KAATAPAN LNK+F + L
Sbjct: 61  NGYTYCVVADESVGRQVPMAFLERIRDDFVARYGGEKAATAPANSLNKDFSSKL 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	136
TAIR|locus:2010627	220	VAMP726 "AT1G04760" [Arabidops	0.823	0.509	0.776	1.3e-45
TAIR|locus:2010642	219	VAMP721 "AT1G04750" [Arabidops	0.823	0.511	0.75	3.1e-44
TAIR|locus:2046367	285	VAMP725 "AT2G32670" [Arabidops	0.823	0.392	0.75	3.1e-44
TAIR|locus:2046595	229	SAR1 "AT2G33120" [Arabidopsis	0.823	0.489	0.708	3.2e-42
TAIR|locus:2046490	217	VAMP723 "AT2G33110" [Arabidops	0.823	0.516	0.678	8.7e-40
TAIR|locus:2080340	240	VAMP727 "AT3G54300" [Arabidops	0.683	0.387	0.655	6e-32
DICTYBASE|DDB_G0277173	260	vamp7B "vesicle-associated mem	0.764	0.4	0.447	6.5e-19
TAIR|locus:2116672	219	VAMP711 "vesicle-associated me	0.794	0.493	0.418	6.7e-17
TAIR|locus:2147952	221	VAMP713 "AT5G11150" [Arabidops	0.794	0.488	0.405	9.8e-16
TAIR|locus:2059591	219	VAMP712 "vesicle-associated me	0.794	0.493	0.409	9.8e-16

TAIR|locus:2010627 VAMP726 "AT1G04760" [Arabidopsis thaliana (taxid:3702)]

 Score = 479 (173.7 bits), Expect = 1.3e-45, P = 1.3e-45
 Identities = 87/112 (77%), Positives = 99/112 (88%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M Q+SLIY+FVARG V+LAEYTEF GNF S+A QCLQKLP+SNNKFTYNCD HTFNYL D
Sbjct:     1 MGQQSLIYSFVARGTVILAEYTEFKGNFTSVAAQCLQKLPSSNNKFTYNCDGHTFNYLAD 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGT 112
             NG+TYCVV  ES+GRQIPMAFLERVK++F  +YGGGKA+TA AN LNKEFG+
Sbjct:    61 NGFTYCVVVIESAGRQIPMAFLERVKEDFNKRYGGGKASTAKANSLNKEFGS 112

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0048451 "petal formation" evidence=RCA

GO:0048453 "sepal formation" evidence=RCA

TAIR|locus:2010642 VAMP721 "AT1G04750" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 84/112 (75%), Positives = 101/112 (90%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct:     1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGT 112
             +G+TYCVVA +S+GRQIPM+FLERVK++F  +YGGGKAATA AN LNKEFG+
Sbjct:    61 DGFTYCVVAVDSAGRQIPMSFLERVKEDFNKRYGGGKAATAQANSLNKEFGS 112

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2046367 VAMP725 "AT2G32670" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 84/112 (75%), Positives = 98/112 (87%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M Q++LIY+FVARG V+L EYTEF GNF ++A QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct:    66 MGQQNLIYSFVARGTVILVEYTEFKGNFTAVAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 125

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGT 112
             NG+TYCVVA ES GRQIPMAFLERVK++F  +YGGGKA TA AN LN+EFG+
Sbjct:   126 NGFTYCVVAVESVGRQIPMAFLERVKEDFNKRYGGGKATTAQANSLNREFGS 177

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

TAIR|locus:2046595 SAR1 "AT2G33120" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 85/120 (70%), Positives = 101/120 (84%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M+Q+SLIY+FVARG V+L E+T+F GNF SIA QCLQKLP+SNNKFTYNCD HTFNYLV+
Sbjct:     1 MAQQSLIYSFVARGTVILVEFTDFKGNFTSIAAQCLQKLPSSNNKFTYNCDGHTFNYLVE 60

Query:    61 NGYT--------YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGT 112
             NG++        YCVVA +S+GRQIPMAFLERVK++F  +YGGGKAATA AN LNKEFG+
Sbjct:    61 NGFSESKYCSISYCVVAVDSAGRQIPMAFLERVKEDFNKRYGGGKAATAQANSLNKEFGS 120

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA;TAS

GO:0005768 "endosome" evidence=IDA;TAS

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

GO:0009920 "cell plate formation involved in plant-type cell wall biogenesis" evidence=IGI

GO:0072661 "protein targeting to plasma membrane" evidence=IGI

TAIR|locus:2046490 VAMP723 "AT2G33110" [Arabidopsis thaliana (taxid:3702)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 76/112 (67%), Positives = 95/112 (84%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             M+Q+SL Y+F+ARG V+L E+T+F GNF S+A Q L+ LP+SNNKFTYNCD HTFN LV+
Sbjct:     1 MAQQSLFYSFIARGTVILVEFTDFKGNFTSVAAQYLENLPSSNNKFTYNCDGHTFNDLVE 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGT 112
             NG+TYCVVA +S+GR+IPMAFLERVK++F  +YGG KAAT  AN LNKEFG+
Sbjct:    61 NGFTYCVVAVDSAGREIPMAFLERVKEDFYKRYGGEKAATDQANSLNKEFGS 112

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=TAS

TAIR|locus:2080340 VAMP727 "AT3G54300" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 61/93 (65%), Positives = 80/93 (86%)

Query:     1 MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
             MSQK LIY+FVA+G VVLAE+T +SGNF++IA QCLQKLP +++K+TY+CD HTFN+LVD
Sbjct:     1 MSQKGLIYSFVAKGTVVLAEHTPYSGNFSTIAVQCLQKLPTNSSKYTYSCDGHTFNFLVD 60

Query:    61 NGYTYCVVADESSGRQIPMAFLERVKDEFVSKY 93
             NG+ + VVADES+GR +P  FLERVK++F  +Y
Sbjct:    61 NGFVFLVVADESTGRSVPFVFLERVKEDFKKRY 93

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005768 "endosome" evidence=IDA;TAS

GO:0006623 "protein targeting to vacuole" evidence=RCA;IMP

GO:0007033 "vacuole organization" evidence=RCA;IMP

GO:0031201 "SNARE complex" evidence=IPI

DICTYBASE|DDB_G0277173 vamp7B "vesicle-associated membrane protein 7B" [Dictyostelium discoideum (taxid:44689)]

 Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
 Identities = 47/105 (44%), Positives = 68/105 (64%)

Query:     6 LIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTY 65
             +IY+ VARG+ VLAE+T  +GNF +I  + L  +P ++ K +Y  + + F+YLV +  TY
Sbjct:     3 IIYSLVARGSSVLAEFTSTNGNFVTITRRILDLIPPNDTKMSYVYEKYIFHYLVSDTLTY 62

Query:    66 CVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
               +ADE  GR+IP  FL+ VK+ F S YG  K  TA A G+N +F
Sbjct:    63 LCMADEEFGRRIPFTFLDDVKNRFKSMYGD-KGKTAIAYGMNSDF 106

GO:0005768 "endosome" evidence=IEA;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000331 "contractile vacuole" evidence=IDA

GO:0006906 "vesicle fusion" evidence=ISS

GO:0005765 "lysosomal membrane" evidence=IEA;ISS

GO:0031902 "late endosome membrane" evidence=IEA;ISS

GO:0031201 "SNARE complex" evidence=ISS

GO:0008333 "endosome to lysosome transport" evidence=ISS

GO:0006810 "transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005764 "lysosome" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0015031 "protein transport" evidence=IEA

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA;ISS

GO:0030670 "phagocytic vesicle membrane" evidence=IEA

GO:0030658 "transport vesicle membrane" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

TAIR|locus:2116672 VAMP711 "vesicle-associated membrane protein 711" [Arabidopsis thaliana (taxid:3702)]

 Score = 208 (78.3 bits), Expect = 6.7e-17, P = 6.7e-17
 Identities = 46/110 (41%), Positives = 69/110 (62%)

Query:     5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNK-FTYNCDAHTFNYLVDNGY 63
             +++YA VARG VVL+E+T  S N ++IA Q L+K+P  N+   +Y+ D + F+    +G 
Sbjct:     2 AILYALVARGTVVLSEFTATSTNASTIAKQILEKVPGDNDSNVSYSQDRYVFHVKRTDGL 61

Query:    64 TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
             T   +A+E++GR+IP AFLE +   FV  YG     TA A  +N+EF  V
Sbjct:    62 TVLCMAEETAGRRIPFAFLEDIHQRFVRTYGRA-VHTALAYAMNEEFSRV 110

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0006944 "cellular membrane fusion" evidence=RCA;TAS

GO:0046909 "intermembrane transport" evidence=TAS

GO:0009651 "response to salt stress" evidence=RCA;IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0010118 "stomatal movement" evidence=IMP

GO:0006598 "polyamine catabolic process" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006816 "calcium ion transport" evidence=RCA

GO:0006970 "response to osmotic stress" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009698 "phenylpropanoid metabolic process" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0042398 "cellular modified amino acid biosynthetic process" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

GO:0048193 "Golgi vesicle transport" evidence=RCA

TAIR|locus:2147952 VAMP713 "AT5G11150" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 45/111 (40%), Positives = 68/111 (61%)

Query:     5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPA--SNNKFTYNCDAHTFNYLVDNG 62
             ++I+A VARG VVL+E++  S N +SI+ Q L+KLP   S++  +Y+ D + F+    +G
Sbjct:     2 AIIFALVARGTVVLSEFSATSTNASSISKQILEKLPGNDSDSHMSYSQDRYIFHVKRTDG 61

Query:    63 YTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
              T   +ADE++GR IP AFL+ +   FV  YG     +A A  +N EF  V
Sbjct:    62 LTVLCMADETAGRNIPFAFLDDIHQRFVKTYGRA-IHSAQAYSMNDEFSRV 111

GO:0003674 "molecular_function" evidence=ND

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

GO:0005774 "vacuolar membrane" evidence=TAS

GO:0009651 "response to salt stress" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2059591 VAMP712 "vesicle-associated membrane protein 712" [Arabidopsis thaliana (taxid:3702)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 45/110 (40%), Positives = 66/110 (60%)

Query:     5 SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKF-TYNCDAHTFNYLVDNGY 63
             S++YA VARG VVLAE +  S N ++IA Q L+K+P + +   +Y+ D + F+    +G 
Sbjct:     2 SILYALVARGTVVLAELSTTSTNASTIAKQILEKIPGNGDSHVSYSQDRYVFHVKRTDGL 61

Query:    64 TYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
             T   +ADE +GR+IP +FLE +   FV  YG     +A A  +N EF  V
Sbjct:    62 TVLCMADEDAGRRIPFSFLEDIHQRFVRTYGRA-IHSAQAYAMNDEFSRV 110

GO:0006810 "transport" evidence=IEA

GO:0016020 "membrane" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9MAS5	VA726_ARATH	No assigned EC number	0.7719	0.8382	0.5181	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	136
pfam13774	82	pfam13774, Longin, Regulated-SNARE-like domain	2e-29

>gnl|CDD|222370 pfam13774, Longin, Regulated-SNARE-like domain

 Score =  101 bits (255), Expect = 2e-29
 Identities = 35/83 (42%), Positives = 52/83 (62%), Gaps = 1/83 (1%)

Query: 31  IAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFV 90
           +A   L+KLP ++ + +Y    +TF+YLV++G  Y  +AD+   R++  AFLE +KDEF+
Sbjct: 1   VAKTILEKLPPNSPRQSYEEGNYTFHYLVEDGLCYLCIADKEYPRRLAFAFLEEIKDEFL 60

Query: 91  SKYGGGKAATAPANGLNKEFGTV 113
            KYGG +AATA       EF T 
Sbjct: 61  KKYGGSQAATASPYAFP-EFDTF 82

Longin is one of the approximately 26 components required for transporting proteins from the ER to the plasma membrane, via the Golgi apparatus. It is necessary for the steps of the transfer from the ER to the Golgi complex. Longins are the only R-SNAREs that are common to all eukaryotes, and they are characterized by a conserved N-terminal domain with a profilin-like fold called a longin domain. Length = 82

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	136
KOG0859	217	consensus Synaptobrevin/VAMP-like protein [Intrace	100.0
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	99.95
PF13774	83	Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3	99.92
KOG0861	198	consensus SNARE protein YKT6, synaptobrevin/VAMP s	98.86
COG5143	190	SNC1 Synaptobrevin/VAMP-like protein [Intracellula	98.83
PF04086	279	SRP-alpha_N: Signal recognition particle, alpha su	95.95
KOG0781	587	consensus Signal recognition particle receptor, al	92.34
PF01217	141	Clat_adaptor_s: Clathrin adaptor complex small cha	88.19
KOG0938	446	consensus Adaptor complexes medium subunit family	85.42

>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.2e-41  Score=253.69  Aligned_cols=128  Identities=59%  Similarity=0.947  Sum_probs=119.3

Q ss_pred             ceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686            4 KSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (136)
Q Consensus         4 m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~-~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL   82 (136)
                      |+|+|++||||++|||||++.+|||..++.+||+|||++ ++|+||..|+|+|||+++||++||||+|++++|++||+||
T Consensus         1 m~iiYs~VARGTvvLaeft~~~gNf~sva~qiL~klp~~~n~k~tYs~d~y~Fh~l~~dg~tylcvadds~gR~ipfaFL   80 (217)
T KOG0859|consen    1 MSIIYSFVARGTVILAEFTEFSGNFSSIAAQILQKLPSSSNSKFTYSCDGYTFHYLVEDGLTYLCVADDSAGRQIPFAFL   80 (217)
T ss_pred             CceeEEEEecceEEEEeeeeccCCHHHHHHHHHHhCCCCCCCceEEecCCeEEEEEEeCCeEEEEEEeccccccccHHHH
Confidence            789999999999999999999999999999999999997 6699999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhh-------HHHHHHhhhh
Q 032686           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSAS-------LRRLRLRFQK  132 (136)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~-------~~~~~~~~~~  132 (136)
                      |+|+++|.++||. .+.+|.+|+||+||+++|++.|+.++       +++++.|..+
T Consensus        81 e~Ik~~F~k~YG~-~a~ta~AysmN~EFs~vL~qqm~y~s~~p~id~lskvkaqv~e  136 (217)
T KOG0859|consen   81 ERIKEDFKKRYGG-GAHTAVAYSMNKEFSSVLKQQMQYCSEHPEISKLAKVKAQVTE  136 (217)
T ss_pred             HHHHHHHHHHhcc-chhHHHHhHhHHHHHHHHHHHHHHHHcCcchhHHHHHHHHHHH
Confidence            9999999999995 58899999999999999999999775       4556665544

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=5.9e-27  Score=177.37  Aligned_cols=122  Identities=23%  Similarity=0.413  Sum_probs=108.3

Q ss_pred             eeEEEEEEc--CCeEEEeeeC---CCCCH----HHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032686            5 SLIYAFVAR--GNVVLAEYTE---FSGNF----NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG   74 (136)
Q Consensus         5 ~I~Ya~Iar--~~~iLae~~~---~~~nf----~~~~~~iL~~l~~~-~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~   74 (136)
                      ||++|+|+|  +++|||+..+   .+|+.    .+.++.+++++.+. +++.|.+.|+|+|||++++||||+||||++||
T Consensus         1 mi~~T~I~RV~DGLPLa~s~d~~e~~~~s~~e~r~q~K~L~kkLs~~s~~r~Sietg~f~fHfli~~~Vcylvicd~~yP   80 (216)
T KOG0862|consen    1 MILLTLIARVRDGLPLAASTDDNEQSGDSLLEYRQQAKSLFKKLSQQSPTRCSIETGPFVFHFLIESGVCYLVICDKSYP   80 (216)
T ss_pred             CceeEEEEEecCCcccccccCcccCCCchHHHHHHHHHHHHHhccCCCCcccccccCCeEEEEEecCCEEEEEEecCCCc
Confidence            689999999  6799998765   23443    57899999999886 88999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCC-CCCCCCcchhhHHHHHHHHHHhhHHHHH
Q 032686           75 RQIPMAFLERVKDEFVSKYGGGKAA-TAPANGLNKEFGTVLIILRRSASLRRLR  127 (136)
Q Consensus        75 ~~~aF~FL~eI~~~F~~~y~~~~~~-~a~~y~~~~~F~~~i~~~m~~~~~~~~~  127 (136)
                      +++||+|||+|+++|.+.|+.+... ..+||+|. +|+++|++..++||-.|.+
T Consensus        81 ~kLAF~YLedL~~EF~~~~~~~~~~~~~RPY~Fi-eFD~~IQk~Kk~ynd~r~~  133 (216)
T KOG0862|consen   81 RKLAFSYLEDLAQEFDKSYGKNIIQPASRPYAFI-EFDTFIQKTKKRYNDTRSQ  133 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhcccccCCccCCCeeEE-ehhHHHHHHHHHhcCcHHH
Confidence            9999999999999999999976555 56999999 7999999999998877643

>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D

Probab=99.92  E-value=1.1e-24  Score=143.83  Aligned_cols=82  Identities=33%  Similarity=0.702  Sum_probs=74.8

Q ss_pred             HHHHHhccCCCCC-CeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCCCCCCCcchh
Q 032686           31 IAYQCLQKLPASN-NKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKE  109 (136)
Q Consensus        31 ~~~~iL~~l~~~~-~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~a~~y~~~~~  109 (136)
                      ++++||++|++.+ +|.+++.|+|+|||+++||++||||||+++|+++||.||++|+++|.++|+..++.++.||+| .+
T Consensus         1 ~a~~il~~i~~~~~~k~s~~~~~~~fh~~~~~~i~~~citd~~~~~r~aF~fL~~i~~~F~~~~~~~~~~~a~~~~~-~~   79 (83)
T PF13774_consen    1 QARKILKRIPPNGNSKMSYESGNYVFHYLVEDGIAYLCITDKSYPKRVAFAFLEEIKQEFIQTYGGDQIKSASPYSF-KE   79 (83)
T ss_dssp             HHHHHHHTS-TTSESEEEEEETTEEEEEEEETTEEEEEEEETTS-HHHHHHHHHHHHHHHHHHCTTTTTTTSTTTTT-HH
T ss_pred             CHHHHHHhcCCCCCCeEEEEECCEEEEEEEcCCeEEEEEEcCCCCcchHHHHHHHHHHHHHHHcCcchhcccCCcch-hh
Confidence            5899999999655 899999999999999999999999999999999999999999999999999778899999999 78


Q ss_pred             hHHH
Q 032686          110 FGTV  113 (136)
Q Consensus       110 F~~~  113 (136)
                      |++.
T Consensus        80 F~~~   83 (83)
T PF13774_consen   80 FDSF   83 (83)
T ss_dssp             HHHH
T ss_pred             cCCC
Confidence            9873

...

>KOG0861 consensus SNARE protein YKT6, synaptobrevin/VAMP syperfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.86  E-value=3.2e-08  Score=73.43  Aligned_cols=70  Identities=17%  Similarity=0.252  Sum_probs=61.3

Q ss_pred             HHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC-CEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCCCCC
Q 032686           30 SIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN-GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAAT  100 (136)
Q Consensus        30 ~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~-gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~  100 (136)
                      -+++.+.++.+| ..+.+++.+.|..|..+.| |++++|++|.+||.+.||.+|++|.++|...-...+|..
T Consensus        42 F~sktvaeRt~~-g~rqsvk~~~Y~~h~yvrndgL~~V~~~D~eYP~rvA~tLL~kvld~~~~k~~~~~W~~  112 (198)
T KOG0861|consen   42 FISKTVAERTGP-GQRQSVKHEEYLVHVYVRNDGLCGVLIADDEYPVRVAFTLLNKVLDEFTTKVPATQWPV  112 (198)
T ss_pred             HHHHHHHHhcCc-ccccccccceeEEEEEEecCCeeEEEEecCcCchhHHHHHHHHHHHHHhhcCcccccCc
Confidence            467888888887 5689999999999999976 999999999999999999999999999977666566763

>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]

Probab=98.83  E-value=2.6e-08  Score=74.93  Aligned_cols=111  Identities=17%  Similarity=0.229  Sum_probs=81.7

Q ss_pred             eeEEEEEEcCC--eEEEe-eeCCCCCH--HHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEeC-CEEEEEEecCCCCccc
Q 032686            5 SLIYAFVARGN--VVLAE-YTEFSGNF--NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDN-GYTYCVVADESSGRQI   77 (136)
Q Consensus         5 ~I~Ya~Iar~~--~iLae-~~~~~~nf--~~~~~~iL~~l~~~-~~k~s~~~~~~~fh~l~~~-gi~ylcitd~~~~~~~   77 (136)
                      .+++..+..|.  .+|++ ++..+..|  ...+.++|..+.|. .++.+.+.++|.|||+..+ |++|.|+|+..+|+++
T Consensus         2 ~s~~~~~~~~~~~~~~~~~~s~~~~~ff~~~~v~~~l~~~~~~~a~~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~l   81 (190)
T COG5143           2 ASISLFRVKGEPLRTLSDAESLSSFSFFHRSKVKEVLRFLSKTSASRASIESGDYFFHYLKMSSGIVYVPISDKEYPNKL   81 (190)
T ss_pred             ceEEEEeecCCcceeeccccccCcccccccchHHHHHHHhcccccchhccccCceEEEEEecCCCceeEEecccccchhh
Confidence            45555565553  34443 21112222  35677888877653 4578889999999999976 9999999999999999


Q ss_pred             HHHHHHHHHHHHHhhcCCCCC-CCCCCCCcchhhHHHHHH
Q 032686           78 PMAFLERVKDEFVSKYGGGKA-ATAPANGLNKEFGTVLII  116 (136)
Q Consensus        78 aF~FL~eI~~~F~~~y~~~~~-~~a~~y~~~~~F~~~i~~  116 (136)
                      ||.+|+++..+|..+.+-..+ ....++.+. +|++++++
T Consensus        82 a~~~~~~~~~~~~~s~~~~~~~d~~~~~~~~-~~d~~~e~  120 (190)
T COG5143          82 AYGYLNSIATEFLKSSALEQLIDDTVGIMRV-NIDKVIEK  120 (190)
T ss_pred             hhHHHHhhccHhhhhhhHhhcccCccchhhh-hHHHHHHh
Confidence            999999999999988874433 334667775 79999988

>PF04086 SRP-alpha_N: Signal recognition particle, alpha subunit, N-terminal; InterPro: IPR007222 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=95.95  E-value=0.0075  Score=47.59  Aligned_cols=92  Identities=22%  Similarity=0.306  Sum_probs=53.6

Q ss_pred             HHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHHHHHHHHHHHHhhcCCCCC----CC-CC
Q 032686           30 SIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKA----AT-AP  102 (136)
Q Consensus        30 ~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~--gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~~~~~----~~-a~  102 (136)
                      .+++.+|-.=.  .+..+|.+|+|..+|...|  |+||++|-..-..-...=.||++|+..|...|+....    .. ..
T Consensus         6 ~LI~~vlleeR--~~~~~~~~d~y~lkw~~~Ne~~LvfVvvYq~il~l~yvd~LL~~v~~~F~~~y~~~l~~~~~~~~~~   83 (279)
T PF04086_consen    6 ALIRDVLLEER--SGNSSFTYDNYTLKWTLDNELGLVFVVVYQKILQLTYVDKLLDDVKKEFVKLYKNQLKQLKPNTSIN   83 (279)
T ss_dssp             HHHHHTGGG---------------EEEEEEETTTTEEEEEEES-GGGHHHHHHHHHHHHHHHHHHTHHHHHSSSTHHHHT
T ss_pred             HHHHHhheeec--cCCCceeEcCEEEEEEEeccCCEEEeeeecccccchHHHHHHHHHHHHHHHHHhHHhhccccccccc
Confidence            45555543311  2346688999999999976  4999999998888777779999999999999984211    11 11


Q ss_pred             CC-CcchhhHHHHHHHHHHhhH
Q 032686          103 AN-GLNKEFGTVLIILRRSASL  123 (136)
Q Consensus       103 ~y-~~~~~F~~~i~~~m~~~~~  123 (136)
                      .| .|...|..+|+++-.....
T Consensus        84 ~~~~Fd~~F~~~l~~~e~~~~~  105 (279)
T PF04086_consen   84 EYFDFDEEFDQLLKELEARSKS  105 (279)
T ss_dssp             -----HHHHHHHHHHHCCCTT-
T ss_pred             cchhHHHHHHHHHHHHHHHhcc
Confidence            23 7888888888887654443

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents the alpha subunit of the SR receptor.; GO: 0003924 GTPase activity, 0005047 signal recognition particle binding, 0005525 GTP binding, 0006184 GTP catabolic process, 0006886 intracellular protein transport, 0005785 signal recognition particle receptor complex; PDB: 2FH5_A 2GO5_1.

>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.34  E-value=0.97  Score=39.15  Aligned_cols=87  Identities=22%  Similarity=0.315  Sum_probs=65.5

Q ss_pred             EEEEEEcCCeEEEeeeCCCCCHHH----HHHHHhccCCCCCCeEEEEeCCeEEEEEEe--CCEEEEEEecCCCCcccHHH
Q 032686            7 IYAFVARGNVVLAEYTEFSGNFNS----IAYQCLQKLPASNNKFTYNCDAHTFNYLVD--NGYTYCVVADESSGRQIPMA   80 (136)
Q Consensus         7 ~Ya~Iar~~~iLae~~~~~~nf~~----~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~--~gi~ylcitd~~~~~~~aF~   80 (136)
                      +++...+|++||+-|.+...||..    ..+.+|-.=  ..+-.++..+.|+..|--+  -+++|+|+-.+-.--..+-.
T Consensus         4 ~faIFtkgG~vLw~~~~~~~~~~~~in~lI~~~ll~e--r~~~~~~~~~~yTlk~q~~N~~~lvfvvvfqki~~L~yv~~   81 (587)
T KOG0781|consen    4 QFAIFTKGGLVLWCYQEVGDNLKGPINALIRSVLLSE--RGGVNSFTFEAYTLKYQLDNQYSLVFVVVFQKILTLTYVDK   81 (587)
T ss_pred             eeeeecCCcEEEEEecccchhccchHHHHHHHHHHHh--hcCcccCchhheeEeeeecCCccEEEEEEEeccchhhhHHH
Confidence            678889999999999887666643    445544331  1222336677888888775  46999999998888888889


Q ss_pred             HHHHHHHHHHhhcCC
Q 032686           81 FLERVKDEFVSKYGG   95 (136)
Q Consensus        81 FL~eI~~~F~~~y~~   95 (136)
                      +|+++.+-|...|.+
T Consensus        82 ll~~v~~~f~e~~~~   96 (587)
T KOG0781|consen   82 LLNDVLNLFREKYDT   96 (587)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            999999999999964

>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=88.19  E-value=7.1  Score=27.42  Aligned_cols=49  Identities=20%  Similarity=0.352  Sum_probs=43.4

Q ss_pred             EEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686           46 FTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG   94 (136)
Q Consensus        46 ~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~   94 (136)
                      -....+++.+=|..-+++.++++++.+..--....||..+-+-+..-++
T Consensus        48 ~i~~~~~~~~vy~~~~dl~~~~v~~~~eNel~~~e~l~~~v~~l~~~~~   96 (141)
T PF01217_consen   48 PIFEHDNYRIVYKRYSDLYFVVVGDENENELLLLEFLHRLVEVLDDYFG   96 (141)
T ss_dssp             SEEEETTEEEEEEEETTEEEEEEESSTSBHHHHHHHHHHHHHHHHHHHS
T ss_pred             eeeecccceeeeEeeccEEEEEEeecccchHHHHHHHHHhhhhhhhhhc
Confidence            3456789999999999999999999999888899999999999988876

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.

>KOG0938 consensus Adaptor complexes medium subunit family [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.42  E-value=12  Score=31.13  Aligned_cols=87  Identities=11%  Similarity=0.256  Sum_probs=64.1

Q ss_pred             EEEEEEcCCeEEEee-e-CCCCCHHHHHHH-HhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHH
Q 032686            7 IYAFVARGNVVLAEY-T-EFSGNFNSIAYQ-CLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLE   83 (136)
Q Consensus         7 ~Ya~Iar~~~iLae~-~-~~~~nf~~~~~~-iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~   83 (136)
                      +|-.=.||++.++-. . +..+|..++.+- ++....-..  -..+.|+-.|||+..+++--.+||..+....+.|.||.
T Consensus         5 lfi~n~rGevlink~fr~dlkrs~~diFRv~vi~n~d~r~--PV~~igsttf~~~r~~nl~lvaitksN~Nva~v~eFl~   82 (446)
T KOG0938|consen    5 LFIYNLRGEVLINKTFRDDLKRSIVDIFRVQVINNLDVRS--PVLTIGSTTFHHIRSSNLWLVAITKSNANVAAVFEFLY   82 (446)
T ss_pred             EEEEeccCcEEEehhhhhhhhhhHHHHHHHhhhhccccCC--CeeEecceeEEEEeeccEEEEEEecCCCchhhHHHHHH
Confidence            344456899988863 2 345666665543 333321111  22357899999999999999999999999999999999


Q ss_pred             HHHHHHHhhcCC
Q 032686           84 RVKDEFVSKYGG   95 (136)
Q Consensus        84 eI~~~F~~~y~~   95 (136)
                      .+.+-+.+-||.
T Consensus        83 kl~avm~aYfgk   94 (446)
T KOG0938|consen   83 KLDAVMNAYFGK   94 (446)
T ss_pred             HHHHHHHHHhcc
Confidence            999999988883

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	136
2dmw_A	131	Solution Structure Of The Longin Domain Of Synaptob		3e-15
4b93_A	189	Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyri		1e-14
2vx8_A	169	Vamp7 Longin Domain Hrb Peptide Complex Length = 16		2e-14
4afi_A	173	Complex Between Vamp7 Longin Domain And Fragment Of		2e-14

>pdb|2DMW|A Chain A, Solution Structure Of The Longin Domain Of Synaptobrevin- Like Protein 1 Length = 131

Iteration: 1
 Score = 77.0 bits (188), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/112 (34%), Positives = 61/112 (54%), Gaps = 1/112 (0%)
Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
           S  ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +
Sbjct: 6   SGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQD 65
Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
              Y  + D+   R     FL  +K  F + Y G +A TAP   +N EF +V
Sbjct: 66  RIVYLCITDDDFERSRAFNFLNEIKKRFQTTY-GSRAQTAPPYAMNSEFSSV 116

>pdb|4B93|A Chain A, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin Repeat Domain Of Varp Length = 189

Iteration: 1
 Score = 75.5 bits (184), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 3   AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 62
Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF +V
Sbjct: 63  YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSV 110

>pdb|2VX8|A Chain A, Vamp7 Longin Domain Hrb Peptide Complex Length = 169

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 45  AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 104
Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF +V
Sbjct: 105 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSV 152

>pdb|4AFI|A Chain A, Complex Between Vamp7 Longin Domain And Fragment Of Delta- Adaptin From Ap3 Length = 173

Iteration: 1
 Score = 74.3 bits (181), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/109 (34%), Positives = 60/109 (55%), Gaps = 1/109 (0%)
Query: 5   SLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
           ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +   
Sbjct: 55  AILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIV 114
Query: 65  YCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTV 113
           Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF +V
Sbjct: 115 YLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSV 162

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	136
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	4e-41
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	2e-37
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	1e-19
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	4e-16
2fh5_A	185	Signal recognition particle receptor alpha subunit	7e-04

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens} Length = 173

 Score =  134 bits (337), Expect = 4e-41
 Identities = 39/114 (34%), Positives = 61/114 (53%), Gaps = 1/114 (0%)

Query: 1   MSQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVD 60
               ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  
Sbjct: 51  EEAMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQ 110

Query: 61  NGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           +   Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF +VL
Sbjct: 111 DRIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVL 163

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A Length = 169

 Score =  124 bits (312), Expect = 2e-37
 Identities = 39/113 (34%), Positives = 61/113 (53%), Gaps = 1/113 (0%)

Query: 2   SQKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN 61
              ++++A VARG  +LA++    GNF  +  Q L K+P+ NNK TY+   + F+Y+  +
Sbjct: 42  KGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQD 101

Query: 62  GYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
              Y  + D+   R    +FL  VK  F + Y G +A TA    +N EF +VL
Sbjct: 102 RIVYLCITDDDFERSRAFSFLNEVKKRFQTTY-GSRAQTALPYAMNSEFSSVL 153

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A Length = 196

 Score = 79.6 bits (195), Expect = 1e-19
 Identities = 29/118 (24%), Positives = 51/118 (43%), Gaps = 11/118 (9%)

Query: 7   IYAFVARGN--VVLAEYTEFSG-------NFNSIAYQCLQKLPA-SNNKFTYNCDAHTFN 56
           +   +AR    + LA   +           + S A Q  +KL   S  + T    A TF+
Sbjct: 4   LLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFH 63

Query: 57  YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           Y+++ G  Y V+ + +  +++  A+LE +  EF  ++ G K  T        EF T +
Sbjct: 64  YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSFIEFDTFI 120

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus} Length = 199

 Score = 70.3 bits (171), Expect = 4e-16
 Identities = 15/104 (14%), Positives = 35/104 (33%), Gaps = 10/104 (9%)

Query: 8   YAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNY-LVDNGYTYC 66
           ++F  R +V           F +   Q + +  A  ++ +     +  +  +  +     
Sbjct: 29  FSFFQRSSV---------QEFMTFTSQLIVERSAKGSRASVKEQEYLCHVYVRSDSLAGV 79

Query: 67  VVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEF 110
           V+AD     ++    LE+V DEF  +             ++   
Sbjct: 80  VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHYTA 123

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1 Length = 185

 Score = 37.0 bits (85), Expect = 7e-04
 Identities = 20/104 (19%), Positives = 36/104 (34%), Gaps = 8/104 (7%)

Query: 13  RGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVV 68
           +G +VL  +   S +     N++    L  L       ++  +A T  Y +DN +    V
Sbjct: 19  KGGLVLWCFQGVSDSCTGPVNALIRSVL--LQERGGNNSFTHEALTLKYKLDNQFELVFV 76

Query: 69  ADESSGRQIPMA--FLERVKDEFVSKYGGGKAATAPANGLNKEF 110
                   +      ++ V   F  KY       +  + LN  F
Sbjct: 77  VGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTF 120

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	136
4afi_A	173	AP-3 complex subunit delta-1, vesicle-associated p	100.0
4b93_A	189	Vesicle-associated membrane protein 7; endocytosis	100.0
2vx8_A	169	Nucleoporin-like protein RIP, vesicle-associated m	100.0
2nut_C	196	Vesicle-trafficking protein SEC22B; human copii SE	99.97
3bw6_A	144	Synaptobrevin homolog YKT6; YKT6P, farnesylation,	99.95
3kyq_A	199	YKT6, synaptobrevin homolog YKT6; V-snare homolog,	99.84
2fh5_A	185	Signal recognition particle receptor alpha subunit	98.1
1w63_M	423	Adaptor-related protein complex 1, MU 1 subunit; e	90.88
1w63_Q	158	Adapter-related protein complex 1 sigma 1A subunit	89.81
3tjz_C	153	Coatomer subunit zeta-1; protein trafficking, golg	89.25
2vgl_M	435	AP-2 complex subunit MU-1; cytoplasmic vesicle, al	87.89
2vgl_S	142	AP-2 complex subunit sigma-1; cytoplasmic vesicle,	81.89

>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}

Probab=100.00  E-value=1.5e-42  Score=256.96  Aligned_cols=120  Identities=33%  Similarity=0.558  Sum_probs=116.0

Q ss_pred             cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686            3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (136)
Q Consensus         3 ~m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL   82 (136)
                      .|+|+|||||||++|||||+..+|||..+++++|+++|++++|.+++.|+|+|||++++|++||||||+++|+++||+||
T Consensus        53 ~M~I~Ya~VArg~tiLAE~t~~~gnf~~va~~iL~kip~~~~r~t~~~~~y~fHyl~~dgl~yl~i~D~~~~rr~aF~FL  132 (173)
T 4afi_A           53 AMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL  132 (173)
T ss_dssp             CCCEEEEEEEETTEEEEEEESSCCCHHHHHHHHHTTSCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             cccEEEEEEECCCEEEEEccCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEECCEEEEEEECCccChhHHHHHH
Confidence            48899999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhH
Q 032686           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASL  123 (136)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~  123 (136)
                      +||+++|.++|+ .++.+++||+|+++|+++|+++|++||.
T Consensus       133 edI~~eF~~~yg-~~~~ta~pya~~~eF~~~L~~~M~~yn~  172 (173)
T 4afi_A          133 NEVKKRFQTTYG-SRAQTALPYAMNSEFSSVLAAQLKHHSE  172 (173)
T ss_dssp             HHHHHHHHHHHG-GGGGTCCTTTTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhc-hhhhhccCcchhHHHHHHHHHHHHHhcC
Confidence            999999999998 4788899999999999999999999995

>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A

Probab=100.00  E-value=2.3e-39  Score=242.67  Aligned_cols=120  Identities=33%  Similarity=0.559  Sum_probs=115.2

Q ss_pred             cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686            3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (136)
Q Consensus         3 ~m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL   82 (136)
                      .|+|+|||||||++|||||+..+|||.++++++|+++|++++|.||+.|+|+|||++++|++|+||||+++|+++||+||
T Consensus         1 ~M~ilYa~VArg~~iLae~t~~~gnf~~ia~~iL~kip~~~~k~s~~~~~y~fHyl~~~gl~yl~i~d~~yp~r~af~fL   80 (189)
T 4b93_A            1 SMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL   80 (189)
T ss_dssp             CCSEEEEEEEETTEEEEEEESSEECHHHHHHHHHTTCCSSSEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CCceEEEEEEeCCEEEEeCCCCCCCHHHHHHHHHHhCCCCCCeEEEEECCEEEEEEEeCCeEEEEEEcCccCHHHHHHHH
Confidence            49999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhH
Q 032686           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASL  123 (136)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~  123 (136)
                      ++|+++|..+|+. .+.++.||+++.+|+++|+++|+.|+-
T Consensus        81 ~~i~~eF~~~~~~-~~~~~~~~~~~~~f~~~l~~~~~~y~d  120 (189)
T 4b93_A           81 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSE  120 (189)
T ss_dssp             HHHHHHHHHHHGG-GGGTCCTTTTHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhhccc-cccccCCccccchhhHHHHHHHHhhhc
Confidence            9999999999984 567889999999999999999998875

>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A

Probab=100.00  E-value=5.2e-37  Score=226.51  Aligned_cols=121  Identities=33%  Similarity=0.552  Sum_probs=109.6

Q ss_pred             cceeEEEEEEcCCeEEEeeeCCCCCHHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHH
Q 032686            3 QKSLIYAFVARGNVVLAEYTEFSGNFNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFL   82 (136)
Q Consensus         3 ~m~I~Ya~Iar~~~iLae~~~~~~nf~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL   82 (136)
                      .|+|+|+|||||++|||||++.+|||..+++.+|+++|+.++|.+++.|+|+|||+++||++|+||||+++|+++||+||
T Consensus        43 ~M~ilYa~VaRG~~VLae~t~~~gnf~~iak~ll~kl~~~~~r~s~~~~~y~fHyl~~ngl~yl~I~D~~yp~r~AF~fL  122 (169)
T 2vx8_A           43 GMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSENNKLTYSHGNYLFHYICQDRIVYLCITDDDFERSRAFSFL  122 (169)
T ss_dssp             SSCCCEEEEEETTEEEEEEESSCBSHHHHHHHHHTTSCSSCEEEEEEETTEEEEEEEETTEEEEEEEETTSCHHHHHHHH
T ss_pred             CCceEEEEEEcCCEEEEEeccCCCCHHHHHHHHHhhCCCCCCceEEEECCEEEEEEEECCEEEEEEEccccchHHHHHHH
Confidence            48999999999999999999999999999999999999988899999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHhhHH
Q 032686           83 ERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSASLR  124 (136)
Q Consensus        83 ~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~~~~  124 (136)
                      ++|+++|.++|+. .+.++.||+|+++|++.|++.|++||.+
T Consensus       123 edI~~eF~~~y~~-~~~~a~pysf~~eF~~~Lk~~~~~~~~~  163 (169)
T 2vx8_A          123 NEVKKRFQTTYGS-RAQTALPYAMNSEFSSVLAAQLKHHSEN  163 (169)
T ss_dssp             HHHHHHHHHHHTT-GGGTCCTTTTHHHHHHHHSCC-------
T ss_pred             HHHHHHHHHHhhh-hhhccCCcchhHHHHHHHHHHHHHhcCc
Confidence            9999999999985 6777889999999999999999999865

>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A

Probab=99.97  E-value=2e-31  Score=200.25  Aligned_cols=116  Identities=26%  Similarity=0.422  Sum_probs=105.4

Q ss_pred             eeEEEEEEcC--CeEEEeeeCCC---CC----HHHHHHHHhccCCC-CCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032686            5 SLIYAFVARG--NVVLAEYTEFS---GN----FNSIAYQCLQKLPA-SNNKFTYNCDAHTFNYLVDNGYTYCVVADESSG   74 (136)
Q Consensus         5 ~I~Ya~Iar~--~~iLae~~~~~---~n----f~~~~~~iL~~l~~-~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~   74 (136)
                      ||+|+|||||  ++||||+++.+   |+    |.++++.+|+++|+ .+++.|++.|+|+|||++++|++|+||||+++|
T Consensus         2 Mi~ya~IaR~~d~~iLa~~~d~~~~~~~~~~~~~~~a~~il~ki~~~~~~r~s~~~~~y~fhy~~~~gl~~l~i~d~~yp   81 (196)
T 2nut_C            2 MVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   81 (196)
T ss_dssp             CCCCEEEEETTTCCEEEEECCCC-----CHHHHHHHHHHHHHHCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             ceEEEEEEEcCCCcEEEEeecccccccccHHHHHHHHHHHHHhcCCCCCCeEEEEeCCEEEEEEeCCCeEEEEEEcCCcc
Confidence            6999999999  79999998743   55    88999999999997 678999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCCC-CCCCCcchhhHHHHHHHHHHhh
Q 032686           75 RQIPMAFLERVKDEFVSKYGGGKAAT-APANGLNKEFGTVLIILRRSAS  122 (136)
Q Consensus        75 ~~~aF~FL~eI~~~F~~~y~~~~~~~-a~~y~~~~~F~~~i~~~m~~~~  122 (136)
                      +++||.||++|+++|...|+. .+.+ +.||+|+ +|++.|+++|++|+
T Consensus        82 ~r~af~fL~~i~~~F~~~~~~-~~~~~~~~~~~~-~f~~~l~~~~~~y~  128 (196)
T 2nut_C           82 KKLAFAYLEDLHSEFDEQHGK-KVPTVSRPYSFI-EFDTFIQKTKKLYI  128 (196)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTT-TTTTCCSTTTTG-GGHHHHHHHHTTTS
T ss_pred             hHHHHHHHHHHHHHHHHhccc-hhccccCCCchH-HHHHHHHHHHHHhc
Confidence            999999999999999999985 4443 6899997 89999999999886

>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A

Probab=99.95  E-value=3.3e-27  Score=169.86  Aligned_cols=111  Identities=16%  Similarity=0.152  Sum_probs=94.3

Q ss_pred             eEEEEEEcC----CeEEEeeeCCC----------CCH-HHHHHHHhccCCCCCCeEEEEeCCeEEEEE-EeCCEEEEEEe
Q 032686            6 LIYAFVARG----NVVLAEYTEFS----------GNF-NSIAYQCLQKLPASNNKFTYNCDAHTFNYL-VDNGYTYCVVA   69 (136)
Q Consensus         6 I~Ya~Iar~----~~iLae~~~~~----------~nf-~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l-~~~gi~ylcit   69 (136)
                      |+|.+|+|+    .++|+++++.+          ++| ..+++.|++++|+ ++|.|++.|+|+|||+ ++||++|||||
T Consensus         7 l~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~i~~r~~~-~~R~sv~~~~y~fH~~~~~~gl~~l~i~   85 (144)
T 3bw6_A            7 IYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GQRQSIEEGNYIGHVYARSEGICGVLIT   85 (144)
T ss_dssp             EEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHHHHHHCCT-TEEEEEEETTEEEEEEECTTSEEEEEEE
T ss_pred             EEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHHHHhhCCC-CceEEEEeCCEEEEEEEecCCEEEEEEE
Confidence            566669997    68999998876          666 7889999999988 5899999999999999 78999999999


Q ss_pred             cCCCCcccHHHHHHHHHHHHHhhcCCCCCCC-CC---CCCcchhhHHHHHHHHHHhh
Q 032686           70 DESSGRQIPMAFLERVKDEFVSKYGGGKAAT-AP---ANGLNKEFGTVLIILRRSAS  122 (136)
Q Consensus        70 d~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~-a~---~y~~~~~F~~~i~~~m~~~~  122 (136)
                      |++||+++||.||++|+++|.++|+...+.+ +.   ||+|     +.|++.|+.|+
T Consensus        86 D~~yp~rvAF~~L~~i~~eF~~~y~~~~~~~~~~~~~~~~f-----~~l~~~i~kYq  137 (144)
T 3bw6_A           86 DKEYPVRPAYTLLNKILDEYLVAHPKEEWADVTETNDALKM-----KQLDTYISKYQ  137 (144)
T ss_dssp             ETTSCHHHHHHHHHHHHHHHHHHSCGGGTTTCSSCCGGGCC-----THHHHHHHHTS
T ss_pred             CCCCChhHHHHHHHHHHHHHHHHccchhhhhcccccCCcch-----HHHHHHHHHhC
Confidence            9999999999999999999999998543665 45   6665     55666666664

>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}

Probab=99.84  E-value=1.1e-20  Score=142.26  Aligned_cols=125  Identities=15%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             cceeEEEEEEc-C-C--eEEEeeeCCC----------CCHHH-HHHHHhccCCCCCCeEEEEeCCeEEE-EEEeCCEEEE
Q 032686            3 QKSLIYAFVAR-G-N--VVLAEYTEFS----------GNFNS-IAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYC   66 (136)
Q Consensus         3 ~m~I~Ya~Iar-~-~--~iLae~~~~~----------~nf~~-~~~~iL~~l~~~~~k~s~~~~~~~fh-~l~~~gi~yl   66 (136)
                      +|-|++-.|.+ + +  ++|+...+.+          ++|.. +++.+++++|| ++|.|++.|+|+|| |+.+||++|+
T Consensus         1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~r~il~r~~~-~~r~s~~~~~y~fH~y~~~~gl~yl   79 (199)
T 3kyq_A            1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTSQLIVERSAK-GSRASVKEQEYLCHVYVRSDSLAGV   79 (199)
T ss_dssp             CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHHHHHHHTSCT-TEEEEEECSSEEEEEEECTTSEEEE
T ss_pred             CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHHHHHHhcCCC-CCeEEEEeCCEEEEEEEecCCEEEE
Confidence            35566667776 2 2  6777654432          45544 45689999887 68999999999999 9999999999


Q ss_pred             EEecCCCCcccHHHHHHHHHHHHHhhcCCCCCC--CCCCCCcchhhHHHHHHHHHHhh-------HHHHHHhhhhc
Q 032686           67 VVADESSGRQIPMAFLERVKDEFVSKYGGGKAA--TAPANGLNKEFGTVLIILRRSAS-------LRRLRLRFQKS  133 (136)
Q Consensus        67 citd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~--~a~~y~~~~~F~~~i~~~m~~~~-------~~~~~~~~~~~  133 (136)
                      ||||+++|+++||+||++|+++|.++|+...+.  .+.||++     +.|+++|+.|+       +.+++.+++.-
T Consensus        80 ~itd~~yp~r~AF~fL~ei~~eF~~~~~~~~~~~~~~~~~~f-----~~l~~~m~~Y~dp~~~d~l~~~q~el~ev  150 (199)
T 3kyq_A           80 VIADSEYPSRVAFTLLEKVLDEFSKQVDRIDWPVGSPATIHY-----TALDGHLSRYQNPREADPMSKVQAELDET  150 (199)
T ss_dssp             EEEETTSCHHHHHHHHHHHHHHHHHHSCGGGSTTCCTTTCCC-----CTHHHHHHHTTSGGGCCCCHHHHHHHHTC
T ss_pred             EEECCCCCHHHHHHHHHHHHHHHHHhccchhhhccccccccc-----HHHHHHHHHhCCchhhhhHHHHHHHHHHH
Confidence            999999999999999999999999999854453  3466665     34666676664       44666666543

>2fh5_A Signal recognition particle receptor alpha subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Homo sapiens} SCOP: d.110.4.4 PDB: 2go5_1

Probab=98.10  E-value=1.1e-05  Score=59.63  Aligned_cols=112  Identities=17%  Similarity=0.247  Sum_probs=76.4

Q ss_pred             EEEEEEcCCeEEEeeeCCCCC----HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccHHH
Q 032686            7 IYAFVARGNVVLAEYTEFSGN----FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIPMA   80 (136)
Q Consensus         7 ~Ya~Iar~~~iLae~~~~~~n----f~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~--gi~ylcitd~~~~~~~aF~   80 (136)
                      +.+.+.+|++||+.++....+    ...+++.+|-.=..  +..+|..|+|..++..+|  |++|++|-..-..-.-.=.
T Consensus        13 ~~~IfTkGGvVLWs~~~~~~~~~~~IN~LIr~VlLEER~--~~~~y~~d~ytlkW~l~NEl~LVFVvVYQ~iL~L~YiD~   90 (185)
T 2fh5_A           13 FFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERG--GNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDK   90 (185)
T ss_dssp             EEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHHHH
T ss_pred             EEEEEeCCeEEEEeecCCcccccchHHHHHHHhhhcccc--CCCceeEcCeEEEEEEeccCCEEEEEEEcccccchHHHH
Confidence            678899999999998543323    34566665433221  234688899999999975  5999999888766666668


Q ss_pred             HHHHHHHHHHhhcCCCCC--CC----CCCCCcchhhHHHHHHHHHH
Q 032686           81 FLERVKDEFVSKYGGGKA--AT----APANGLNKEFGTVLIILRRS  120 (136)
Q Consensus        81 FL~eI~~~F~~~y~~~~~--~~----a~~y~~~~~F~~~i~~~m~~  120 (136)
                      +|++|+..|...|++...  ..    ..++.|++.|...++++-..
T Consensus        91 LL~~v~~~Fv~~Y~~~L~~~~~~~~~~~~~~Fd~~F~~~l~~~e~~  136 (185)
T 2fh5_A           91 LIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEES  136 (185)
T ss_dssp             HHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhcccccccccccCchhHHHHHHHHHHHHH
Confidence            999999999999964311  11    13456778888887776543

>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=90.88  E-value=1.4  Score=35.59  Aligned_cols=91  Identities=12%  Similarity=0.143  Sum_probs=59.5

Q ss_pred             ceeEEEEEEc--CCeEEEee-eC-CCCC-HHHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCcccH
Q 032686            4 KSLIYAFVAR--GNVVLAEY-TE-FSGN-FNSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQIP   78 (136)
Q Consensus         4 m~I~Ya~Iar--~~~iLae~-~~-~~~n-f~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~a   78 (136)
                      |||...+|..  |.++|+-+ .. ...+ .+..-+.++.+-.+...--..+.+++.|-|...+++.|+|+++.+..--..
T Consensus         1 mMI~~i~I~~~~Gk~~l~k~y~~~~~~~~~~~f~~~v~~~~~~~~~~~~i~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~   80 (423)
T 1w63_M            1 MSASAVYVLDLKGKVLICRNYRGDVDMSEVEHFMPILMEKEEEGMLSPILAHGGVRFMWIKHNNLYLVATSKKNACVSLV   80 (423)
T ss_dssp             -CCCEEEEEETTTEECSCBCCSCSCTTTTHHHHHHHHHHHHHTSCCCSEEEETTEEEEEEEETTEEEEEEESSCCCTHHH
T ss_pred             CceEEEEEECCCCCEEEEEecCCCCChHHHHHHHHHHhhccccCCCCCEEEECCEEEEEEEECCEEEEEEecCCCCHHHH
Confidence            6666666653  55666643 22 1222 233334444331101111234578999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcC
Q 032686           79 MAFLERVKDEFVSKYG   94 (136)
Q Consensus        79 F~FL~eI~~~F~~~y~   94 (136)
                      +.||..+.+-+..-++
T Consensus        81 le~L~~~v~~l~~yf~   96 (423)
T 1w63_M           81 FSFLYKVVQVFSEYFK   96 (423)
T ss_dssp             HHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999988887775

>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=89.81  E-value=3.8  Score=28.65  Aligned_cols=48  Identities=10%  Similarity=0.229  Sum_probs=42.2

Q ss_pred             EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686           47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG   94 (136)
Q Consensus        47 s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~   94 (136)
                      ..+.+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-++
T Consensus        49 ~i~~~~~~~vy~~~~~Lyfv~~~~~~~Nel~~le~L~~~vevl~~yf~   96 (158)
T 1w63_Q           49 FLEWRDLKVVYKRYASLYFCCAIEGQDNELITLELIHRYVELLDKYFG   96 (158)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECSSSCHHHHHHHHHHHHHHHHHHHS
T ss_pred             eEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            345688999999999999999999999999999999998888877776

>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A

Probab=89.25  E-value=4.2  Score=28.42  Aligned_cols=89  Identities=11%  Similarity=0.147  Sum_probs=62.6

Q ss_pred             ceeEEEEEE--cCCeEEEeeeCCC-CCH---HHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeCCEEEEEEecCCCCccc
Q 032686            4 KSLIYAFVA--RGNVVLAEYTEFS-GNF---NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYTYCVVADESSGRQI   77 (136)
Q Consensus         4 m~I~Ya~Ia--r~~~iLae~~~~~-~nf---~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~   77 (136)
                      .||..-+|-  +|.++|+-+=... .+.   ....+.+.+++...++ -....+++.+-|...+++.|+++++.+..--.
T Consensus        11 ~mI~~ililn~~Gk~~lsK~Y~~~~~~~~~~~~~e~~i~~~~~r~~~-~i~~~~~~~~vy~~~~~Lyfv~~~~~~eNel~   89 (153)
T 3tjz_C           11 YTVKAILILDNDGDRLFAKYYDDTYPSVKEQKAFEKNIFNKTHRTDS-EIALLEGLTVVYKSSIDLYFYVIGSSYENELM   89 (153)
T ss_dssp             BCEEEEEEECTTSCEEEEEECSSSSCSHHHHHHHHHHHHHHHSSCCC-CEEEETTEEEEEEECSSCEEEEEEETTSCHHH
T ss_pred             HHheEEEEECCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCC-CEEEECCEEEEEEEECCEEEEEEEcCCCChHH
Confidence            356555555  4778898764321 221   2223334443333233 34567899999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHhhc
Q 032686           78 PMAFLERVKDEFVSKY   93 (136)
Q Consensus        78 aF~FL~eI~~~F~~~y   93 (136)
                      .+.||..+-+-+..-+
T Consensus        90 ile~L~~~ve~l~~yf  105 (153)
T 3tjz_C           90 LMTVLNCLFDSLSQML  105 (153)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            9999999999998888

>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M

Probab=87.89  E-value=9.5  Score=30.79  Aligned_cols=48  Identities=15%  Similarity=0.233  Sum_probs=42.9

Q ss_pred             EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686           47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG   94 (136)
Q Consensus        47 s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~   94 (136)
                      ..+.+++.|-|...+++.|+|+++.+..--..+.||..+.+-+..-++
T Consensus        47 ii~~~~~~~vy~~~~~Lyfv~~~~~~~n~l~~le~L~~~v~vl~~yf~   94 (435)
T 2vgl_M           47 VTNIARTSFFHVKRSNIWLAAVTKQNVNAAMVFEFLYKMCDVMAAYFG   94 (435)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred             EEEECCEEEEEEEECCEEEEEEecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence            456789999999999999999999999999999999999988887776

>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S

Probab=81.89  E-value=9.8  Score=25.82  Aligned_cols=48  Identities=8%  Similarity=0.166  Sum_probs=42.8

Q ss_pred             EEEeCCeEEEEEEeCCEEEEEEecCCCCcccHHHHHHHHHHHHHhhcC
Q 032686           47 TYNCDAHTFNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYG   94 (136)
Q Consensus        47 s~~~~~~~fh~l~~~gi~ylcitd~~~~~~~aF~FL~eI~~~F~~~y~   94 (136)
                      ..+.+++.|-|...+++.|+|+++.+..--..+.||..+-+-+..-+|
T Consensus        49 ~~~~~~~~~vy~~~~~Lyfv~~~~~~~N~l~~le~L~~~ve~l~~yf~   96 (142)
T 2vgl_S           49 FVEFRNFKIIYRRYAGLYFCICVDVNDNNLAYLEAIHNFVEVLNEYFH   96 (142)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred             EEEECCEEEEEEEECCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence            345689999999999999999999999999999999999998887776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	136
d1ifqa_	127	d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId	3e-24
d1ioua_	140	d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker	2e-10
d2fh5a1	129	d.110.4.4 (A:1-129) Signal recognition particle re	4e-04

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 88.3 bits (219), Expect = 3e-24
 Identities = 30/120 (25%), Positives = 52/120 (43%), Gaps = 11/120 (9%)

Query: 5   SLIYAFVARGN--VVLAEYTEFSGNFN-------SIAYQCLQKLPA-SNNKFTYNCDAHT 54
           S++   +AR    + LA   +             S A Q  +KL   S  + T    A T
Sbjct: 1   SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMT 60

Query: 55  FNYLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           F+Y+++ G  Y V+ + +  +++  A+LE +  EF  ++ G K  T        EF T +
Sbjct: 61  FHYIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQH-GKKVPTVSRPYSFIEFDTFI 119

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 140

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (126), Expect = 2e-10
 Identities = 12/120 (10%), Positives = 36/120 (30%), Gaps = 12/120 (10%)

Query: 6   LIYAFVARGNVVLAEYTEFS----------GNFNSIAYQCLQKLPASNNKFTYNCDAHTF 55
            ++       + L+E  + S          G F +   + +     +  + +     +  
Sbjct: 7   GVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGAGERQSIEEGNYIG 66

Query: 56  N-YLVDNGYTYCVVADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVL 114
           + Y    G    ++ D+    +     L ++ DE++  +   +         +      L
Sbjct: 67  HVYARSEGICGVLITDKQYPVRPAYTLLNKILDEYLVAH-PKEEWADVTETNDALKMKQL 125

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 129

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.5 bits (82), Expect = 4e-04
 Identities = 23/108 (21%), Positives = 40/108 (37%), Gaps = 8/108 (7%)

Query: 9   AFVARGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDNGYT 64
              ++G +VL  +   S +     N++    L +    NN FT+  +A T  Y +DN + 
Sbjct: 6   TIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTH--EALTLKYKLDNQFE 63

Query: 65  YCVVADESSGRQIPMA--FLERVKDEFVSKYGGGKAATAPANGLNKEF 110
              V        +      ++ V   F  KY       +  + LN  F
Sbjct: 64  LVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTF 111

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	136
d1ifqa_	127	Sec22b {Mouse (Mus musculus) [TaxId: 10090]}	100.0
d1ioua_	140	Synaptobrevin homolog 1 ykt6 {Baker's yeast (Sacch	99.77
d2fh5a1	129	Signal recognition particle receptor alpha subunit	98.39
d2vglm2	141	Mu2 adaptin (clathrin coat assembly protein AP50)	96.42
d2vgls_	142	Sigma2 adaptin (clathrin coat assembly protein AP1	95.12

>d1ifqa_ d.110.4.1 (A:) Sec22b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Sec22b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=2.2e-33  Score=196.86  Aligned_cols=116  Identities=23%  Similarity=0.364  Sum_probs=102.6

Q ss_pred             eeEEEEEEcCC--eEEEeeeCCCCCH-------HHHHHHHhccCCCC-CCeEEEEeCCeEEEEEEeCCEEEEEEecCCCC
Q 032686            5 SLIYAFVARGN--VVLAEYTEFSGNF-------NSIAYQCLQKLPAS-NNKFTYNCDAHTFNYLVDNGYTYCVVADESSG   74 (136)
Q Consensus         5 ~I~Ya~Iar~~--~iLae~~~~~~nf-------~~~~~~iL~~l~~~-~~k~s~~~~~~~fh~l~~~gi~ylcitd~~~~   74 (136)
                      +|+||+|||+.  +||||+++.+++.       .+.++.+|++++|+ +++.|++.|+|+|||+++||++||||||+++|
T Consensus         1 sil~t~IaR~~DgL~L~~s~~~~~~~~~~~~~~k~qak~ll~kl~~~~~~r~s~~~~~y~fHy~~~~gi~yl~i~d~~~~   80 (127)
T d1ifqa_           1 SVLLTMIARVADGLPLAASMQEDEQSGRDLQQYQSQAKQLFRKLNEQSPTRCTLEAGAMTFHYIIEQGVCYLVLCEAAFP   80 (127)
T ss_dssp             CCCEEEEEETTTCCEEEEECCCTTCCHHHHHHHHHHHHHHHTTCCTTSCSEEEEEETTEEEEEEEETTEEEEEEEETTSC
T ss_pred             CeEEEEEEEecCCcEEEEEeccccccchhHHHHHHHHHHHHHhCCCCCCCcEEEEECCEEEEEEecCCeEEEEEEccccC
Confidence            58999999964  8999998665432       35788999999874 68999999999999999999999999999999


Q ss_pred             cccHHHHHHHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHh
Q 032686           75 RQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSA  121 (136)
Q Consensus        75 ~~~aF~FL~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~  121 (136)
                      +++||+||+||+++|.++|+......++||+|. +|+.+|++.++.|
T Consensus        81 ~~laF~fLeei~~eF~~~y~~~i~~~~rpy~Fi-~Fd~~iqk~k~~y  126 (127)
T d1ifqa_          81 KKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFI-EFDTFIQKTKKLY  126 (127)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTG-GGHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhhhhhhhcccCCcchH-HHHHHHHHHHHhc
Confidence            999999999999999999986444446899998 7999999999887

>d1ioua_ d.110.4.1 (A:) Synaptobrevin homolog 1 ykt6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: Synatpobrevin N-terminal domain
domain: Synaptobrevin homolog 1 ykt6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.77  E-value=5.5e-19  Score=124.70  Aligned_cols=116  Identities=15%  Similarity=0.106  Sum_probs=85.4

Q ss_pred             ceeEEEEEEc--C--CeEEEeeeCCC-------CCHH----HHHHHHhccCCCCCCeEEEEeCCeEEE-EEEeCCEEEEE
Q 032686            4 KSLIYAFVAR--G--NVVLAEYTEFS-------GNFN----SIAYQCLQKLPASNNKFTYNCDAHTFN-YLVDNGYTYCV   67 (136)
Q Consensus         4 m~I~Ya~Iar--~--~~iLae~~~~~-------~nf~----~~~~~iL~~l~~~~~k~s~~~~~~~fh-~l~~~gi~ylc   67 (136)
                      |-|++-.|.+  +  .++|+...+.+       ++..    -+++.+.+++++ +.|.+++.++|+|| |+.++|++|+|
T Consensus         1 Mkl~~~~v~~~~~~~~~~L~~a~Dlssf~ffqR~svkE~~~f~sr~i~~Rt~~-g~r~sv~~~~y~~h~yv~~~gl~~l~   79 (140)
T d1ioua_           1 MRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAETVASRTGA-GERQSIEEGNYIGHVYARSEGICGVL   79 (140)
T ss_dssp             CCCCEEEEEEEETTEEEEEEEEECCSSCCTTHHHHHHHHHHHHHHHHHHHCCS-SSEEEEEETTEEEEEECCSSSCEEEE
T ss_pred             CeEEEEEEEEcCCCCcEEEeeeccccccceeehHhHHHHHHHHHHHHhhcCCC-CceEEEEcCCeEEEEEEeeCCEEEEE
Confidence            4455555665  2  27888766533       2222    378889999887 57999999999999 78889999999


Q ss_pred             EecCCCCcccHHHHHHHHHHHHHhhcCCCCCCCCCCCCcchhhHHHHHHHHHHh
Q 032686           68 VADESSGRQIPMAFLERVKDEFVSKYGGGKAATAPANGLNKEFGTVLIILRRSA  121 (136)
Q Consensus        68 itd~~~~~~~aF~FL~eI~~~F~~~y~~~~~~~a~~y~~~~~F~~~i~~~m~~~  121 (136)
                      |||.+||+++||.||++|.++|.++|+...|.. .+.+.+..+-+.|.++|+.|
T Consensus        80 i~d~~Yp~r~AF~~L~~i~~eF~~~~~~~~~~~-i~~~~~~~~~~~l~~~l~kY  132 (140)
T d1ioua_          80 ITDKQYPVRPAYTLLNKILDEYLVAHPKEEWAD-VTETNDALKMKQLDTYISKY  132 (140)
T ss_dssp             EBCTTSCHHHHHHHHHHHHHHHHHSSCHHHHTT-CSCCCTTTSCHHHHHHHHHT
T ss_pred             EECCCcchHHHHHHHHHHHHHHHHHcChHhhhh-hhccccccchHHHHHHHHHh
Confidence            999999999999999999999999998533322 22222333445677777766

>d2fh5a1 d.110.4.4 (A:1-129) Signal recognition particle receptor alpha subunit, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Profilin-like
superfamily: SNARE-like
family: SRP alpha N-terminal domain-like
domain: Signal recognition particle receptor alpha subunit, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=4.7e-07  Score=61.88  Aligned_cols=112  Identities=16%  Similarity=0.215  Sum_probs=78.1

Q ss_pred             eeEEEEEEcCCeEEEeeeCCCCCH----HHHHHHHhccCCCCCCeEEEEeCCeEEEEEEeC--CEEEEEEecCCCCcccH
Q 032686            5 SLIYAFVARGNVVLAEYTEFSGNF----NSIAYQCLQKLPASNNKFTYNCDAHTFNYLVDN--GYTYCVVADESSGRQIP   78 (136)
Q Consensus         5 ~I~Ya~Iar~~~iLae~~~~~~nf----~~~~~~iL~~l~~~~~k~s~~~~~~~fh~l~~~--gi~ylcitd~~~~~~~a   78 (136)
                      .=..+.+.+|++||..++..+.++    ..+++.+|-.=.  .+..+|..|+|..++-.+|  +++|+++-.+-..-.-.
T Consensus         2 iD~f~IftkGGiVLW~~~~~~~~~~~~IN~LI~~vlLEER--~~~~~~~~d~y~lkw~~~Ne~~lvfV~vYQ~il~l~yv   79 (129)
T d2fh5a1           2 VDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQER--GGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYV   79 (129)
T ss_dssp             CSEEEEEETTSBEEEEEBTTTBSCCCHHHHHHHHTGGGC---------CCCCCEEEEEEETTTTEEEEEEESCGGGHHHH
T ss_pred             ccEEEEEeCCeEEEEeecCCCcccchhHHHHHHHhheecc--cCCCceeECCEEEEEEEeccCCEEEEEEEhhhhchHHH
Confidence            336788999999999987544443    455555543221  2345678899999999976  48999998887777777


Q ss_pred             HHHHHHHHHHHHhhcCCCC--CC----CCCCCCcchhhHHHHHHHH
Q 032686           79 MAFLERVKDEFVSKYGGGK--AA----TAPANGLNKEFGTVLIILR  118 (136)
Q Consensus        79 F~FL~eI~~~F~~~y~~~~--~~----~a~~y~~~~~F~~~i~~~m  118 (136)
                      =.||++|+..|...|++..  ..    ...++.|+++|...|+++=
T Consensus        80 d~lL~~i~~~F~~~y~~~l~~~~~~~~~~~~~~Fd~~F~~~l~~~e  125 (129)
T d2fh5a1          80 DKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAE  125 (129)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHSSSTHHHHSCCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccccchHHHHHHHHHHHH
Confidence            7999999999999997321  11    1247888899999888763