Citrus Sinensis ID: 032714

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYSRNWQQNSKRRKFSGNAFFSEH
Secondary Structure (PSIPRED)
ccccEEEEEccccEEEcccccccccccccEEEccEEEcccEEEEccccccccccccccEEEEEEcEEEEcEEccccccEEEEEEEEEEcccccccccccEEEccEEEccccccccccccccccccccccccEEcc
Secondary Structure Prediction (SSPRO)
cccEEEEEccccEEEEccccccccccHHHHHHHHcccccccEEEEcEEEEEEcccHHHHEHHccccEEEEEEEHccccEEEEEEHHHHHHHHHcccccccccccccccccEEEcccHHHcccccccccccccccc
Coil and Loop (DISEMBL)
MGRIFLVelkgrsyykcrfcnSHLALADSVLSWsfncrrgraylFSDVVNIMLGPQEERLMLSGMHTVEDIFCcccgqivgwkyvssfqpffscfcsenlsnisgaatsCKLYSRnwqqnskrrkfsgnaffseh
Flexible Loop (DISEMBL)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYsrnwqqnskrrkfsgnaffseh
Low Complexity Region (SEG)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVssfqpffscfcsENLSNISGAATSCKLYSRNWQQNSKRRKFSGNAFFSEH
Disordered region (IsUnstruct)
***IFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYSRNW******************
Disordered Region (DISOPRED)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYS*********************
Disordered Region (DISEMBL)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYSRNWQQNSKRRKFSGNAFFSEH
Disordered Region (DISPRO)
*GRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYSR********************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPFFSCFCSENLSNISGAATSCKLYSRNWQQNSKRRKFSGNAFFSEH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q9FN32	129	Protein yippee-like At5g5	yes	no	0.651	0.682	0.719	2e-32
P59234	129	Protein yippee-like OS=So	N/A	no	0.659	0.689	0.533	2e-25
Q9C777	129	Protein yippee-like At3g1	no	no	0.659	0.689	0.555	5e-24
Q9SR97	128	Protein yippee-like At3g0	no	no	0.651	0.687	0.483	3e-23
Q9LY56	121	Protein yippee-like At3g5	no	no	0.614	0.685	0.511	2e-22
Q8S5M8	119	Putative yippee-like prot	no	no	0.548	0.621	0.540	4e-19
Q5XID5	127	Protein yippee-like 4 OS=	yes	no	0.555	0.590	0.506	6e-17
Q65Z93	127	Protein yippee-like 4 OS=	yes	no	0.555	0.590	0.506	6e-17
Q96NS1	127	Protein yippee-like 4 OS=	yes	no	0.555	0.590	0.506	6e-17
Q65Z56	127	Protein yippee-like 4 OS=	N/A	no	0.555	0.590	0.506	6e-17

>sp|Q9FN32|YIPL7_ARATH Protein yippee-like At5g53940 OS=Arabidopsis thaliana GN=At5g53940 PE=2 SV=1

 Score =  137 bits (345), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1  MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          MLSGMHTV DIFCCCCGQ VGWKY S+ +
Sbjct: 60 MLSGMHTVADIFCCCCGQNVGWKYESAHE 88

Arabidopsis thaliana (taxid: 3702)

>sp|P59234|YIPL_SOLTU Protein yippee-like OS=Solanum tuberosum PE=2 SV=1

 Score =  114 bits (285), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 48/90 (53%), Positives = 70/90 (77%), Gaps = 1/90 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F++ L+G+  Y C+ C +HLAL+++++S SF+C+ G+AYLFS VVN+  G  E R+
Sbjct: 1  MGRLFVLTLEGK-IYSCKHCGTHLALSENIVSKSFHCKHGKAYLFSKVVNVTSGEIENRM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQP 90
          M++GMHTV DIFC CCG IVGWKY ++ + 
Sbjct: 60 MMTGMHTVADIFCVCCGSIVGWKYETAHEK 89

Solanum tuberosum (taxid: 4113)

>sp|Q9C777|YIPL3_ARATH Protein yippee-like At3g11230 OS=Arabidopsis thaliana GN=At3g11230 PE=2 SV=1

 Score =  109 bits (272), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 50/90 (55%), Positives = 67/90 (74%), Gaps = 1/90 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+
Sbjct: 1  MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQP 90
          M++GMHTV DI+C  CG  VGWKY  +F+ 
Sbjct: 60 MMTGMHTVVDIYCVKCGSYVGWKYEFAFEK 89

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SR97|YIPL1_ARATH Protein yippee-like At3g08990 OS=Arabidopsis thaliana GN=At3g08990 PE=2 SV=2

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 67/89 (75%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F+++L+G  Y  C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+
Sbjct: 1  MGRLFVIDLEGLVY-SCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          M++G HTV DIFC  CG +VGWKY  ++ 
Sbjct: 60 MITGWHTVADIFCVSCGSLVGWKYEIAYD 88

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LY56|YIPL4_ARATH Protein yippee-like At3g55890 OS=Arabidopsis thaliana GN=At3g55890 PE=2 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 64/84 (76%), Gaps = 1/84 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F+V+L+G + Y C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+
Sbjct: 1  MGRVFMVDLEG-NIYICKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKY 84
          M++G+H V DIFC  CG  VGWKY
Sbjct: 60 MITGLHNVVDIFCVGCGSNVGWKY 83

Arabidopsis thaliana (taxid: 3702)

>sp|Q8S5M8|YIPL_ORYSJ Putative yippee-like protein Os10g0369500 OS=Oryza sativa subsp. japonica GN=Os10g0369500 PE=3 SV=1

 Score = 93.6 bits (231), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 40/74 (54%), Positives = 54/74 (72%)

Query: 16 KCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCC 75
          KCR C    A AD++LS  F  R GRAYLF  VVNI LGP E+R +++G+HTV+DI+C C
Sbjct: 24 KCRRCRVDAASADAILSRDFRGRFGRAYLFDHVVNISLGPNEDRYLMTGLHTVKDIYCSC 83

Query: 76 CGQIVGWKYVSSFQ 89
          C QI+GW+Y  +++
Sbjct: 84 CQQILGWRYEKAYE 97

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5XID5|YPEL4_RAT Protein yippee-like 4 OS=Rattus norvegicus GN=Ypel4 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVSSFQ 89
            C   +GWKY  +F+
Sbjct: 89  SCKTTLGWKYEQAFE 103

Rattus norvegicus (taxid: 10116)

>sp|Q65Z93|YPEL4_MOUSE Protein yippee-like 4 OS=Mus musculus GN=Ypel4 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVSSFQ 89
            C   +GWKY  +F+
Sbjct: 89  SCKTTLGWKYEQAFE 103

Mus musculus (taxid: 10090)

>sp|Q96NS1|YPEL4_HUMAN Protein yippee-like 4 OS=Homo sapiens GN=YPEL4 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVSSFQ 89
            C   +GWKY  +F+
Sbjct: 89  SCKTTLGWKYEQAFE 103

Homo sapiens (taxid: 9606)

>sp|Q65Z56|YPEL4_CHLAE Protein yippee-like 4 OS=Chlorocebus aethiops GN=YPEL4 PE=2 SV=1

 Score = 86.3 bits (212), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 51/75 (68%)

Query: 15  YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
           Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct: 29  YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query: 75  CCGQIVGWKYVSSFQ 89
            C   +GWKY  +F+
Sbjct: 89  SCKTTLGWKYEQAFE 103

Chlorocebus aethiops (taxid: 9534)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
449457755	127	PREDICTED: protein yippee-like At5g53940	0.666	0.708	0.725	2e-32
15238881	129	yippee-like zinc-binding protein [Arabid	0.651	0.682	0.719	1e-30
255536753	127	fad NAD binding oxidoreductases, putativ	0.637	0.677	0.701	1e-30
359493828	127	PREDICTED: protein yippee-like At5g53940	0.614	0.653	0.690	3e-30
356549697	129	PREDICTED: protein yippee-like At5g53940	0.651	0.682	0.662	4e-30
297796245	129	yippee family protein [Arabidopsis lyrat	0.651	0.682	0.707	8e-30
356548694	135	PREDICTED: uncharacterized protein LOC10	0.622	0.622	0.694	2e-29
224114878	122	predicted protein [Populus trichocarpa]	0.651	0.721	0.674	3e-29
351728072	135	uncharacterized protein LOC100499933 [Gl	0.651	0.651	0.662	3e-29
388498478	127	unknown [Medicago truncatula]	0.659	0.700	0.677	6e-29

>gi|449457755|ref|XP_004146613.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus] gi|449524786|ref|XP_004169402.1| PREDICTED: protein yippee-like At5g53940-like [Cucumis sativus]

 Score =  143 bits (361), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 66/91 (72%), Positives = 80/91 (87%), Gaps = 1/91 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+FLVEL+GRSY +CRFCN+++ALAD VLS +FNC +GRAYLFS+VVNI  GP+EERL
Sbjct: 1  MGRVFLVELEGRSY-RCRFCNNNVALADDVLSRTFNCSQGRAYLFSNVVNITSGPKEERL 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF 91
          MLSGMH VEDIFCC CGQI+GWKYV++   +
Sbjct: 60 MLSGMHIVEDIFCCICGQILGWKYVTTHDKY 90

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15238881|ref|NP_200205.1| yippee-like zinc-binding protein [Arabidopsis thaliana] gi|27923898|sp|Q9FN32.1|YIPL7_ARATH RecName: Full=Protein yippee-like At5g53940 gi|10177256|dbj|BAB10724.1| zinc-binding protein-like [Arabidopsis thaliana] gi|21554253|gb|AAM63328.1| zinc-binding protein-like [Arabidopsis thaliana] gi|51971218|dbj|BAD44301.1| zinc-binding protein-like [Arabidopsis thaliana] gi|88011182|gb|ABD38914.1| At5g53940 [Arabidopsis thaliana] gi|332009048|gb|AED96431.1| yippee-like zinc-binding protein [Arabidopsis thaliana]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1  MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          MLSGMHTV DIFCCCCGQ VGWKY S+ +
Sbjct: 60 MLSGMHTVADIFCCCCGQNVGWKYESAHE 88

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255536753|ref|XP_002509443.1| fad NAD binding oxidoreductases, putative [Ricinus communis] gi|223549342|gb|EEF50830.1| fad NAD binding oxidoreductases, putative [Ricinus communis]

 Score =  137 bits (345), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 61/87 (70%), Positives = 78/87 (89%), Gaps = 1/87 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F+V+++GR Y  CRFC++ LALAD VLS +FNCR+GRAYLFS+VVNI +GP EER+
Sbjct: 1  MGRLFVVDVEGRCY-SCRFCDTPLALADDVLSRTFNCRKGRAYLFSNVVNITVGPPEERM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSS 87
          MLSGMHTVEDI+CC CGQ++GWKYV++
Sbjct: 60 MLSGMHTVEDIYCCSCGQLLGWKYVAA 86

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493828|ref|XP_002282618.2| PREDICTED: protein yippee-like At5g53940-like [Vitis vinifera] gi|302142969|emb|CBI20264.3| unnamed protein product [Vitis vinifera]

 Score =  136 bits (342), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 58/84 (69%), Positives = 75/84 (89%), Gaps = 1/84 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F+VEL+ R+Y +C+FC +HLALAD ++S +F+CRRG+AYLF++ VNI +G QEER+
Sbjct: 1  MGRVFVVELEARAY-ECKFCKTHLALADDLVSRAFHCRRGKAYLFNNAVNITVGAQEERM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKY 84
          M+SGMHTV DIFCCCCGQIVGWKY
Sbjct: 60 MISGMHTVADIFCCCCGQIVGWKY 83

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356549697|ref|XP_003543228.1| PREDICTED: protein yippee-like At5g53940-like [Glycine max]

 Score =  135 bits (341), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 77/89 (86%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGRIF+VEL+GRSY +C+FC +HLALAD ++S +F+CRRG+AYLF++ VN  +G  EER+
Sbjct: 1  MGRIFVVELEGRSY-RCKFCRTHLALADDLISRAFHCRRGKAYLFNNAVNFTIGTPEERM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          MLSG+HTV DIFCCCCGQI+GWKY S+ +
Sbjct: 60 MLSGLHTVADIFCCCCGQIIGWKYESAHE 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297796245|ref|XP_002866007.1| yippee family protein [Arabidopsis lyrata subsp. lyrata] gi|297311842|gb|EFH42266.1| yippee family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  134 bits (338), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 63/89 (70%), Positives = 74/89 (83%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct: 1  MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          MLSGMHTV DIFCC CGQ VGWKY S+ +
Sbjct: 60 MLSGMHTVADIFCCSCGQNVGWKYESAHE 88

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548694|ref|XP_003542735.1| PREDICTED: uncharacterized protein LOC100305833 [Glycine max]

 Score =  133 bits (334), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 59/85 (69%), Positives = 74/85 (87%), Gaps = 1/85 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F++EL GRSY  C+FCN+ LALAD +LS +FNC +GRAYLFS VVN++LGPQ ER+
Sbjct: 1  MGRVFVLELDGRSY-GCKFCNTPLALADHILSRNFNCSQGRAYLFSKVVNVILGPQVERM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYV 85
          M+SG+HTVEDIFCC CG ++GWKYV
Sbjct: 60 MISGLHTVEDIFCCNCGNLLGWKYV 84

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114878|ref|XP_002316882.1| predicted protein [Populus trichocarpa] gi|222859947|gb|EEE97494.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (334), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 60/89 (67%), Positives = 76/89 (85%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGRIF+VEL+GRSY +C+FC +HLAL D ++S SF CRRG+AYLF++VVNI +G  EER+
Sbjct: 1  MGRIFVVELEGRSY-RCKFCGTHLALPDQLVSKSFRCRRGKAYLFNNVVNITVGVLEERM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          MLSGMHTV DIFCCCCG I+GWKY ++ +
Sbjct: 60 MLSGMHTVADIFCCCCGGIIGWKYEAAHE 88

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351728072|ref|NP_001238206.1| uncharacterized protein LOC100499933 [Glycine max] gi|255627805|gb|ACU14247.1| unknown [Glycine max]

 Score =  132 bits (333), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 59/89 (66%), Positives = 75/89 (84%), Gaps = 1/89 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F++EL GRSY  C+FCN+ LALAD +LS +FNC +GRAYLFS VVN+ LGPQ +R+
Sbjct: 1  MGRVFVLELDGRSY-GCKFCNTPLALADHILSRNFNCSQGRAYLFSKVVNVTLGPQVDRM 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQ 89
          M+SG+HTVEDIFCC CGQ +GWKYV + +
Sbjct: 60 MISGLHTVEDIFCCSCGQPLGWKYVLTHE 88

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498478|gb|AFK37305.1| unknown [Medicago truncatula]

 Score =  132 bits (331), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 61/90 (67%), Positives = 73/90 (81%), Gaps = 1/90 (1%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F ++L GR+Y +C FC +  ALAD VLS SF+C RGRAYLFS VVN+ LG Q ERL
Sbjct: 1  MGRVFYLDLDGRAY-RCTFCRTPFALADHVLSRSFSCSRGRAYLFSKVVNVTLGTQVERL 59

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQP 90
          M+SG+HTVEDIFCCCCGQIVGWKYV + + 
Sbjct: 60 MMSGLHTVEDIFCCCCGQIVGWKYVVAHEK 89

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:2154674	129	AT5G53940 [Arabidopsis thalian	0.614	0.643	0.75	1.6e-31
TAIR|locus:2047736	130	AT2G40110 "AT2G40110" [Arabido	0.614	0.638	0.547	1.1e-23
TAIR|locus:2074708	162	AT3G11230 "AT3G11230" [Arabido	0.614	0.512	0.583	1.1e-23
TAIR|locus:2095269	128	AT3G08990 "AT3G08990" [Arabido	0.614	0.648	0.511	1.4e-23
TAIR|locus:2082053	121	AT3G55890 "AT3G55890" [Arabido	0.614	0.685	0.511	2.1e-22
DICTYBASE|DDB_G0267990	129	ypel "yippee-like protein" [Di	0.622	0.651	0.464	3.2e-17
UNIPROTKB|Q96NS1	127	YPEL4 "Protein yippee-like 4"	0.518	0.551	0.528	1.1e-16
MGI|MGI:3605071	127	Ypel4 "yippee-like 4 (Drosophi	0.518	0.551	0.528	1.1e-16
RGD|1560142	127	Ypel4 "yippee-like 4 (Drosophi	0.518	0.551	0.528	1.1e-16
ZFIN|ZDB-GENE-030516-4	119	ypel3 "yippee-like 3" [Danio r	0.518	0.588	0.528	2.3e-16

TAIR|locus:2154674 AT5G53940 [Arabidopsis thaliana (taxid:3702)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 63/84 (75%), Positives = 72/84 (85%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGRIF VEL+GRSY +CRFC +HLAL D ++S SF+CRRG+AYLF+  VNI +GP EERL
Sbjct:     1 MGRIFTVELEGRSY-RCRFCRTHLALPDDLVSRSFHCRRGKAYLFNRSVNISMGPLEERL 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKY 84
             MLSGMHTV DIFCCCCGQ VGWKY
Sbjct:    60 MLSGMHTVADIFCCCCGQNVGWKY 83

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2047736 AT2G40110 "AT2G40110" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 46/84 (54%), Positives = 63/84 (75%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+V L+G+  Y C+ C +HLA  + ++S SF+C+ G+AYLF+ V N+ +G  EERL
Sbjct:     1 MGRLFVVNLEGK-IYSCKHCKTHLATYEDIISKSFHCKHGKAYLFNKVANVSIGETEERL 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKY 84
             M++G HTV DIFC  CG IVGWKY
Sbjct:    60 MMTGKHTVADIFCVSCGSIVGWKY 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2074708 AT3G11230 "AT3G11230" [Arabidopsis thaliana (taxid:3702)]

 Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
 Identities = 49/84 (58%), Positives = 64/84 (76%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+FLV L+G+SY  C+ C ++LAL D V+S SF  R G+AYLFS VVN+  G +E+R+
Sbjct:    34 MGRLFLVNLEGKSY-SCKHCKTNLALCDDVVSKSFQSRHGKAYLFSKVVNVYAGKKEDRM 92

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKY 84
             M++GMHTV DI+C  CG  VGWKY
Sbjct:    93 MMTGMHTVVDIYCVKCGSYVGWKY 116

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2095269 AT3G08990 "AT3G08990" [Arabidopsis thaliana (taxid:3702)]

 Score = 271 (100.5 bits), Expect = 1.4e-23, P = 1.4e-23
 Identities = 43/84 (51%), Positives = 65/84 (77%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+++L+G   Y C++C +H A+ + ++S SF+C+ GRAYLF +VVN+ +G +E R+
Sbjct:     1 MGRLFVIDLEGL-VYSCKYCQTHFAVTNDIISKSFHCKHGRAYLFDNVVNVTVGEKEHRV 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKY 84
             M++G HTV DIFC  CG +VGWKY
Sbjct:    60 MITGWHTVADIFCVSCGSLVGWKY 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2082053 AT3G55890 "AT3G55890" [Arabidopsis thaliana (taxid:3702)]

 Score = 260 (96.6 bits), Expect = 2.1e-22, P = 2.1e-22
 Identities = 43/84 (51%), Positives = 63/84 (75%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F+V+L+G  Y  C+ C +HL+    ++S SF C+ GRAYLF++VVN+ +G +E+R+
Sbjct:     1 MGRVFMVDLEGNIYI-CKLCKTHLSTDQDIMSKSFQCKNGRAYLFNNVVNVSVGEKEDRM 59

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKY 84
             M++G+H V DIFC  CG  VGWKY
Sbjct:    60 MITGLHNVVDIFCVGCGSNVGWKY 83

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

DICTYBASE|DDB_G0267990 ypel "yippee-like protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 39/84 (46%), Positives = 51/84 (60%)

Query:     1 MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
             MGR+F   L G S   C  C +HL L D ++S  F  R G A+LF    NI +GP E+R 
Sbjct:     1 MGRLFKTYLTGPSIICCLNCKTHLTLHDQLISKQFQGRHGTAFLFGTCSNITVGPSEDRT 60

Query:    61 MLSGMHTVEDIFCCCCGQIVGWKY 84
             + +GMH V DI+C  CG+ +GWKY
Sbjct:    61 LTTGMHIVADIYCIDCGETLGWKY 84

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|Q96NS1 YPEL4 "Protein yippee-like 4" [Homo sapiens (taxid:9606)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKY 84
              C   +GWKY
Sbjct:    89 SCKTTLGWKY 98

GO:0005730 "nucleolus" evidence=IEA

MGI|MGI:3605071 Ypel4 "yippee-like 4 (Drosophila)" [Mus musculus (taxid:10090)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKY 84
              C   +GWKY
Sbjct:    89 SCKTTLGWKY 98

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1560142 Ypel4 "yippee-like 4 (Drosophila)" [Rattus norvegicus (taxid:10116)]

 Score = 206 (77.6 bits), Expect = 1.1e-16, P = 1.1e-16
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF    GRAYLF+ VVN+  GP E+RL+L+G+H+V DIFC 
Sbjct:    29 YSCVHCRAHLAKHDELISKSFQGSHGRAYLFNSVVNVGCGPAEQRLLLTGLHSVADIFCE 88

Query:    75 CCGQIVGWKY 84
              C   +GWKY
Sbjct:    89 SCKTTLGWKY 98

GO:0005730 "nucleolus" evidence=IEA

ZFIN|ZDB-GENE-030516-4 ypel3 "yippee-like 3" [Danio rerio (taxid:7955)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 37/70 (52%), Positives = 48/70 (68%)

Query:    15 YKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC 74
             Y C  C +HLA  D ++S SF   +GRAYLF+ VVN+  GP EERL+L+G+H V DI+C 
Sbjct:    21 YSCVHCRAHLANHDDLISKSFQGSQGRAYLFNSVVNVGCGPAEERLLLTGLHAVADIYCE 80

Query:    75 CCGQIVGWKY 84
              C   +GWKY
Sbjct:    81 NCHTTLGWKY 90

GO:0007420 "brain development" evidence=IMP

GO:0005634 "nucleus" evidence=IEA

GO:0006915 "apoptotic process" evidence=IEA

GO:0005730 "nucleolus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FN32	YIPL7_ARATH	No assigned EC number	0.7191	0.6518	0.6821	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam03226	109	pfam03226, Yippee, Yippee putative zinc-binding pr	6e-42

>gnl|CDD|217436 pfam03226, Yippee, Yippee putative zinc-binding protein

 Score =  134 bits (339), Expect = 6e-42
 Identities = 46/90 (51%), Positives = 62/90 (68%)

Query: 1  MGRIFLVELKGRSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERL 60
          MGR+F+V L G   Y C+ C +HLAL   ++S SF  R GRAYLF+ VVN++ G  E+R 
Sbjct: 1  MGRLFVVYLTGGRIYSCKHCKTHLALHSDIISKSFTGRHGRAYLFNRVVNVVEGEPEDRQ 60

Query: 61 MLSGMHTVEDIFCCCCGQIVGWKYVSSFQP 90
          ML+G+HTV DIFC  CG  +GWKY  +++ 
Sbjct: 61 MLTGLHTVRDIFCVGCGTTLGWKYEFAYEE 90

Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG3399	122	consensus Predicted Yippee-type zinc-binding prote	100.0
PF03226	96	Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis	99.92
TIGR00357	134	methionine-R-sulfoxide reductase. This model descr	95.83
PRK00222	142	methionine sulfoxide reductase B; Provisional	95.77
PF01641	124	SelR: SelR domain; InterPro: IPR002579 Peptide met	95.28
PRK05508	119	methionine sulfoxide reductase B; Provisional	95.03
PF11648	123	RIG-I_C-RD: C-terminal domain of RIG-I; InterPro:	94.92
PRK05550	283	bifunctional methionine sulfoxide reductase B/A pr	94.07
PRK14018	521	trifunctional thioredoxin/methionine sulfoxide red	92.08
KOG0856	146	consensus Predicted pilin-like transcription facto	90.19
PF14976	150	FAM72: FAM72 protein	87.64
COG0229	140	Conserved domain frequently associated with peptid	86.02

>KOG3399 consensus Predicted Yippee-type zinc-binding protein [General function prediction only]

Probab=100.00  E-value=3.6e-42  Score=258.83  Aligned_cols=105  Identities=44%  Similarity=0.823  Sum_probs=98.9

Q ss_pred             CcceeeeccCC-CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCc
Q 032714            1 MGRIFLVELKG-RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQI   79 (135)
Q Consensus         1 MGr~F~~yL~g-~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~   79 (135)
                      |||+|.++|++ ++.|+|++|+||||.++|||||+|+|++|+||||++|+||..|++|+|.|+||+|+|+||+|..|++.
T Consensus         1 mgR~F~~~l~~~~~~y~C~~C~thla~~~dliSksf~gr~G~AyLf~~vvNv~~ge~e~R~mlTG~h~V~di~C~~C~~~   80 (122)
T KOG3399|consen    1 MGRLFEAMLEANHRLYSCAHCKTHLARHDDLISKSFRGRTGRAYLFNRVVNVIIGETEQRVMLTGLHTVADIFCVLCGTG   80 (122)
T ss_pred             CcchHHHHhccCCceEeccCCcccccchhhccccccccCCCcchhhhhhhhheechHHHHHHHHhHHhhcchhhhhcCCC
Confidence            99999999998 48999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeeEEEEEeccccc---cccccccccccc
Q 032714           80 VGWKYVSSFQPFFS---CFCSENLSNISG  105 (135)
Q Consensus        80 LGWKYe~A~E~sq~---~~c~~~l~~~~~  105 (135)
                      ||||||.|||+||.   +-.+.+|-.+.+
T Consensus        81 ~GWkYe~a~e~sQkyKEGk~ilE~~~i~~  109 (122)
T KOG3399|consen   81 LGWKYEHAYEKSQKYKEGKFILELAEIFK  109 (122)
T ss_pred             cceeeeeccCchhhhcCcchHHHHHHhcC
Confidence            99999999999998   667776655544

>PF03226 Yippee-Mis18: Yippee zinc-binding/DNA-binding /Mis18, centromere assembly; InterPro: IPR004910 This entry represents the Yippee-like (YPEL) family of putative zinc-binding proteins which is highly conserved among eukaryotes

Probab=99.92  E-value=9e-26  Score=159.16  Aligned_cols=85  Identities=36%  Similarity=0.716  Sum_probs=78.5

Q ss_pred             EEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeecccc----EEEeeeeeeecCCceeeEEEEEec
Q 032714           14 YYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGM----HTVEDIFCCCCGQIVGWKYVSSFQ   89 (135)
Q Consensus        14 ~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~----HtV~DI~C~~C~t~LGWKYe~A~E   89 (135)
                      +|.|++|++||+++++|||  |+|+.|+||||+   ||..+++++|.|.||.    |+|+||+|.+|++.|||||++|++
T Consensus         2 vf~C~~C~t~l~ds~~lvs--~~g~~~~a~l~~---~v~~~~~~~~~~~t~~~~~~~~~~~l~C~~C~~~lGwkY~~a~~   76 (96)
T PF03226_consen    2 VFQCKNCKTILADSNELVS--FHGREGKAYLFN---NVSNGVPVDRELMTGETGGDHTVRDLFCSGCNTILGWKYESAPE   76 (96)
T ss_pred             EEECCCCCCCcCCHHHhee--cCCCCccEEEEe---eeeecccccceEEEeeCCCCEEEEEeEcccCChhHCcEEEEcCH
Confidence            7999999999999999999  999999999998   7778888999999999    999999999999999999999999


Q ss_pred             cccc---ccccccccccc
Q 032714           90 PFFS---CFCSENLSNIS  104 (135)
Q Consensus        90 ~sq~---~~c~~~l~~~~  104 (135)
                      + |.   +.++.+++.++
T Consensus        77 ~-~~~k~g~file~~~i~   93 (96)
T PF03226_consen   77 E-QKYKEGKFILEKASIS   93 (96)
T ss_pred             h-HhhhCCEEEEEhhHEE
Confidence            9 75   77777777654

The first protein in this family to be characterised, the Yippee protein from Drosophila, was identified by yeast interaction trap screen as a protein that physically interacts with moth hemolin []. It was subsequently found to be a member of a highly conserved family of proteins found in diverse eukaryotes including plants, animals and fungi []. Mammals contain five members of this family, YPEL1 to YPEL5, while other organisms tend to contain only two or three members. The mammalian proteins all appear to localise in the nucleus. YPEL1-4 are located in an unknown structure located on or close to the mitotic apparatus in the mitotic phase, whereas in the interphase they are located in the nuclei and nucleoli. In contrast, YPEL5 is localised to the centrosome and nucleus during interphase and at the mitotic spindle during mitosis, suggesting a function distinct from that of YPEL1-4. The localisation of the YPEL proteins suggests a novel, thopugh still unknown, function involved in cell division.

>TIGR00357 methionine-R-sulfoxide reductase

Probab=95.83  E-value=0.0072  Score=46.61  Aligned_cols=81  Identities=15%  Similarity=0.341  Sum_probs=55.6

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeecc-ccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEecc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDV-VNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQP   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~v-vNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~   90 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+ -|. +...+|..  -|+.. ..|.|..|+..||--......+
T Consensus        38 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~-V~~~~D~s--~gm~R-tEv~C~~Cg~HLGHVF~DGP~p  109 (134)
T TIGR00357        38 EGIYVDITCGEPLFSSED----KFDSGCGWPSFYKPISEEV-VAYERDES--HGMIR-TEVRCRNCDAHLGHVFDDGPEP  109 (134)
T ss_pred             CeEEEccCCCCccccccc----hhcCCCCCcCcCcccCCCc-eEEeecCC--CCcEE-EEEEecCCCCccCcccCCCCCC
Confidence            458999999999988775    354445544434444 222 22233332  25554 5799999999999988888888


Q ss_pred             cccccccccc
Q 032714           91 FFSCFCSENL  100 (135)
Q Consensus        91 sq~~~c~~~l  100 (135)
                      +..|.|+|-.
T Consensus       110 tg~RyCINs~  119 (134)
T TIGR00357       110 TGLRYCINSA  119 (134)
T ss_pred             CCceEeecce
Confidence            8899999854

This model describes a domain found in PilB, a protein important for pilin expression, N-terminal to a domain coextensive to with the known peptide methionine sulfoxide reductase (MsrA), a protein repair enzyme, of E. coli. Among the early completed genomes, this module is found if and only if MsrA is also found, whether N-terminal to MsrA (as for Helicobacter pylori), C-terminal (as for Treponema pallidum), or in a separate polypeptide. Although the function of this region is not clear, an auxiliary function to MsrA is suggested.

>PRK00222 methionine sulfoxide reductase B; Provisional

Probab=95.77  E-value=0.0063  Score=47.39  Aligned_cols=82  Identities=17%  Similarity=0.377  Sum_probs=56.0

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+..-.+...+|+  .-|+.. ..|.|..|+..||-.......++
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~V~~~~D~--s~gm~R-tEv~C~~Cg~HLGHVF~DGP~pt  113 (142)
T PRK00222         41 KGIYVCIVCGEPLFSSDT----KFDSGCGWPSFTKPIDEEAIRELRDT--SHGMVR-TEVRCANCDSHLGHVFPDGPKPT  113 (142)
T ss_pred             CeEEEecCCCchhcCCcc----cccCCCCCcCcCcccCCCceEEeecc--CCCceE-EEEEeCCCCCccCcccCCCCCCC
Confidence            458999999999988754    45555555544454422122222332  223333 57999999999999988888889


Q ss_pred             ccccccccc
Q 032714           92 FSCFCSENL  100 (135)
Q Consensus        92 q~~~c~~~l  100 (135)
                      ..|.|+|-.
T Consensus       114 g~RyCINs~  122 (142)
T PRK00222        114 GLRYCINSA  122 (142)
T ss_pred             CCEeeecee
Confidence            999999853

>PF01641 SelR: SelR domain; InterPro: IPR002579 Peptide methionine sulphoxide reductase (Msr) reverses the inactivation of many proteins due to the oxidation of critical methionine residues by reducing methionine sulphoxide, Met(O), to methionine []

Probab=95.28  E-value=0.015  Score=44.30  Aligned_cols=82  Identities=20%  Similarity=0.425  Sum_probs=52.9

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEecc-
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQP-   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~-   90 (135)
                      +-+|.|+.|.++|=.+++    -|....|=.-.+..+..-.+...+|..  -|+.. ..|.|..|+..||=-......+ 
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----Kf~Sg~GWPSF~~~i~~~~v~~~~D~s--~g~~R-~Ev~C~~Cg~HLGHVF~DGp~~~  107 (124)
T PF01641_consen   35 EGIYVCAVCGTPLFSSDT----KFDSGCGWPSFWQPIPGDAVKEREDFS--HGMVR-TEVRCARCGSHLGHVFDDGPPPP  107 (124)
T ss_dssp             SEEEEETTTS-EEEEGGG----EETSSSSSSEESSCSSTTSEEEEEEEC--TSSEE-EEEEETTTCCEEEEEESTSSTTC
T ss_pred             CEEEEcCCCCCccccCcc----cccCCcCCccccCcCChHHEEEecccc--CCceE-EEEEecCCCCccccEeCCCCCCC
Confidence            458999999999987663    455555544444444332222233322  25554 4699999999999988877765 


Q ss_pred             cccccccccc
Q 032714           91 FFSCFCSENL  100 (135)
Q Consensus        91 sq~~~c~~~l  100 (135)
                      +..|.|+|-+
T Consensus       108 tg~RyCINS~  117 (124)
T PF01641_consen  108 TGLRYCINSA  117 (124)
T ss_dssp             TSCEEEE-GG
T ss_pred             CCcEEEeeee
Confidence            4779999854

It is present in most living organisms, and the cognate structural gene belongs to the so-called minimum gene set [, ]. The domains: MsrA and MsrB, reduce different epimeric forms of methionine sulphoxide. This group represents MsrB, the crystal structure of which has been determined to 1.8A []. The overall structure shows no resemblance to the structures of MsrA (IPR002569 from INTERPRO) from other organisms; though the active sites show approximate mirror symmetry. In each case, conserved amino acid motifs mediate the stereo-specific recognition and reduction of the substrate. Unlike the MsrA domain, the MsrB domain activates the cysteine or selenocysteine nucleophile through a unique Cys-Arg-Asp/Glu catalytic triad. The collapse of the reaction intermediate most likely results in the formation of a sulphenic or selenenic acid moiety. Regeneration of the active site occurs through a series of thiol-disulphide exchange steps involving another active site Cys residue and thioredoxin. In a number of pathogenic bacteria, including Neisseria gonorrhoeae, the MsrA and MsrB domains are fused; the MsrA being N-terminal to MsrB. This arrangement is reversed in Treponema pallidum. In N. gonorrhoeae and Neisseria meningitidis, a thioredoxin domain is fused to the N terminus. This may function to reduce the active sites of the downstream MsrA and MsrB domains. ; GO: 0008113 peptide-methionine-(S)-S-oxide reductase activity, 0055114 oxidation-reduction process; PDB: 1L1D_A 3E0O_D 2KZN_A 3HCG_B 3HCH_A 2L1U_A 3MAO_A 2K8D_A 3HCJ_A 3HCI_A ....

>PRK05508 methionine sulfoxide reductase B; Provisional

Probab=95.03  E-value=0.02  Score=43.53  Aligned_cols=79  Identities=19%  Similarity=0.462  Sum_probs=53.4

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEE-EEecc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV-SSFQP   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe-~A~E~   90 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+-|. +...+|..   | + =..|.|..|+..||=-.. ....+
T Consensus        31 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~-v~~~~D~~---~-~-RtEv~C~~C~~HLGHVF~d~gp~p  100 (119)
T PRK05508         31 KGTYVCKQCGAPLYRSED----KFKSGCGWPSFDDEIKGA-VKRIPDAD---G-R-RTEIVCANCGGHLGHVFEGEGFTP  100 (119)
T ss_pred             CeEEEecCCCCccccccc----cccCCCCCcccCcccccc-eEEEecCC---C-c-EEEEEeCCCCCccCcccCCCCCCC
Confidence            458999999999988775    355555544444444332 22333433   2 2 367999999999998776 44567


Q ss_pred             cccccccccc
Q 032714           91 FFSCFCSENL  100 (135)
Q Consensus        91 sq~~~c~~~l  100 (135)
                      +..|.|+|-.
T Consensus       101 tg~RyCINS~  110 (119)
T PRK05508        101 KNTRHCVNSI  110 (119)
T ss_pred             CCCEEeecce
Confidence            8889999853

>PF11648 RIG-I_C-RD: C-terminal domain of RIG-I; InterPro: IPR021673 This family of proteins represents the regulatory domain RD of RIG-I, a protein which initiates a signalling cascade that provides essential antiviral protection for the host

Probab=94.92  E-value=0.021  Score=42.67  Aligned_cols=85  Identities=15%  Similarity=0.163  Sum_probs=55.1

Q ss_pred             EEeccCCCCccCCCCCeece--eeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           14 YYKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        14 ~y~C~~C~tHLA~~~elISK--~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      .+.|++|.+.++..+||-.-  +-+=--.+.  |...+.+...|.+.....-+.+....|+|..|++.||-.+.  |...
T Consensus         4 ~llC~kC~~~~C~~~DIr~ie~~hhv~v~p~--F~~~~~~~~~~~~~~~~~~d~~~~~~I~C~~C~~~wG~~m~--yk~~   79 (123)
T PF11648_consen    4 KLLCRKCKKFACSGSDIRKIENSHHVVVDPE--FWERYIVRPHPKPLQKSFGDWEPNGKIHCKNCGQDWGIMMK--YKGV   79 (123)
T ss_dssp             EEEETTTTCEEEEGGGEEEETTTEEEE-SHH--HHCTEEEEECSSCTSEEESSSEEEEEEEETSTSBEEEEEEE--ETTE
T ss_pred             EEECCCCCceeEchhheEEecCCcEEEcCcc--ceeeEEeccCCccccceecceEeCCEEEcCCCChHhhhheE--ECCc
Confidence            58899999999999998653  111001122  33556666666654444558899999999999999997544  3333


Q ss_pred             cc-----ccccccccc
Q 032714           92 FS-----CFCSENLSN  102 (135)
Q Consensus        92 q~-----~~c~~~l~~  102 (135)
                      ++     +.+.+.+++
T Consensus        80 ~LP~L~iksfvv~~~~   95 (123)
T PF11648_consen   80 ELPCLKIKSFVVELET   95 (123)
T ss_dssp             EEEEE-GGGEEEEETT
T ss_pred             cccEEEeeeeeeeecC
Confidence            32     445555555

The RD domain binds viral RNA, activating the RIG-I ATPase by RNA-dependent dimerisation. The structure of RD contains a zinc-binding domain and is thought to confer ligand specificity []. ; GO: 0016817 hydrolase activity, acting on acid anhydrides; PDB: 2RQB_A 3GA3_A 2W4R_D 3EQT_A 2RQA_A 2RMJ_A 3NCU_A 2QFD_C 2QFB_D 3TMI_A ....

>PRK05550 bifunctional methionine sulfoxide reductase B/A protein; Provisional

Probab=94.07  E-value=0.034  Score=47.37  Aligned_cols=80  Identities=21%  Similarity=0.437  Sum_probs=54.6

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEE-EEecc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV-SSFQP   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe-~A~E~   90 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+.+-..- .++..   |+  =..|.|..|+..||--.. ....+
T Consensus        34 ~G~y~c~~c~~~LF~s~~----Kf~sg~GWPsF~~~~~~~~~~-~~d~~---~~--R~Ev~c~~c~~HLGHvF~ddgp~p  103 (283)
T PRK05550         34 KGVYLCRRCGAPLFRSED----KFNSGCGWPSFDDEIPGAVKR-LPDAD---GR--RTEIVCANCGAHLGHVFEGEGLTP  103 (283)
T ss_pred             CcEEEcCCCCchhcCChh----hccCCCCCcCcCcccCCccEE-EEcCC---Cc--eEEEEecCCCCccCcccCCCCCCC
Confidence            458999999999988764    355455544445555443222 22222   33  478999999999998776 55677


Q ss_pred             ccccccccccc
Q 032714           91 FFSCFCSENLS  101 (135)
Q Consensus        91 sq~~~c~~~l~  101 (135)
                      +..|.|+|-..
T Consensus       104 tg~RyCiNs~s  114 (283)
T PRK05550        104 KNTRHCVNSAS  114 (283)
T ss_pred             CCccccccccc
Confidence            88899998543

>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional

Probab=92.08  E-value=0.14  Score=46.78  Aligned_cols=82  Identities=7%  Similarity=0.075  Sum_probs=54.7

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEec-c
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQ-P   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E-~   90 (135)
                      +-+|.|+.|.++|=++++    -|.-..|=.-.+..+-+-.+...+|.  .-|++.+ .|.|..|+..||-....... +
T Consensus       416 ~G~y~c~~c~~pLf~s~~----Kf~sg~GWPsF~~~i~~~~v~~~~d~--s~g~~R~-Ev~c~~c~~HLGHvf~dgp~~~  488 (521)
T PRK14018        416 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKVVTEHDDF--SYNMRRT-EVRSRAADSHLGHVFPDGPRDK  488 (521)
T ss_pred             CEEEEecCCCCccccCcc----cccCCCCCcccCcccCcCceEEeecc--CCCceEE-EEEECCCCCcCCcccCCCCCCC
Confidence            468999999999988763    45555554444444432222223332  2355553 79999999999998877664 4


Q ss_pred             cccccccccc
Q 032714           91 FFSCFCSENL  100 (135)
Q Consensus        91 sq~~~c~~~l  100 (135)
                      +..|.|+|-.
T Consensus       489 ~g~RyCiNs~  498 (521)
T PRK14018        489 GGLRYCINGA  498 (521)
T ss_pred             CCCEeeecee
Confidence            7889999853

>KOG0856 consensus Predicted pilin-like transcription factor [Posttranslational modification, protein turnover, chaperones]

Probab=90.19  E-value=0.38  Score=37.84  Aligned_cols=81  Identities=19%  Similarity=0.371  Sum_probs=50.0

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceee-ccccEEEeeeeeeecCCceeeEEE-EEec
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLM-LSGMHTVEDIFCCCCGQIVGWKYV-SSFQ   89 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m-~TG~HtV~DI~C~~C~t~LGWKYe-~A~E   89 (135)
                      +-+|.|+.|.++|=.++-    -|.-..|=--.|+.+   ..|....+.+ .-|.| =.+|.|..|+-.||--.+ .-+-
T Consensus        52 ~GvY~C~~C~~pLykS~t----KfdsgcGWPAF~e~i---~~gaI~r~~d~s~~~~-R~Ev~Ca~C~~HLGHVF~~eG~~  123 (146)
T KOG0856|consen   52 EGVYVCAGCGTPLYKSTT----KFDSGCGWPAFFEAI---GPGAITRTPDNSRGGR-RTEVSCATCGGHLGHVFKGEGPK  123 (146)
T ss_pred             CceEEEeecCCccccccc----cccCCCCCchhhhcc---CCCceeeccccCCCCc-ceEEEEeecCCceeeeecCCCCC
Confidence            469999999999987653    454444443333332   1221111111 11222 357899999999998766 5555


Q ss_pred             -ccccccccccc
Q 032714           90 -PFFSCFCSENL  100 (135)
Q Consensus        90 -~sq~~~c~~~l  100 (135)
                       +++.|+|++..
T Consensus       124 ~Pt~~R~CiNS~  135 (146)
T KOG0856|consen  124 TPTDERHCINSV  135 (146)
T ss_pred             CCCCceeEeeee
Confidence             88889999853

>PF14976 FAM72: FAM72 protein

Probab=87.64  E-value=1.2  Score=35.19  Aligned_cols=63  Identities=33%  Similarity=0.612  Sum_probs=41.5

Q ss_pred             EEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCC----Ccccceeecccc--------EEEeeeeeeecCCcee
Q 032714           14 YYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIML----GPQEERLMLSGM--------HTVEDIFCCCCGQIVG   81 (135)
Q Consensus        14 ~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~----G~~e~R~m~TG~--------HtV~DI~C~~C~t~LG   81 (135)
                      +..|+.|.+-|+...           =||.|..+ .||.+    -||.+..-.+|.        =.++||-|..|+..||
T Consensus        15 ~L~C~~C~~~l~~Rg-----------MkAvLLad-t~ieLySTD~~P~~~v~~vg~~y~t~~C~C~~~d~aC~~CGn~vG   82 (150)
T PF14976_consen   15 ILCCKFCDQVLCNRG-----------MKAVLLAD-TNIELYSTDIPPTNCVDFVGSCYFTRTCKCKIQDIACLGCGNIVG   82 (150)
T ss_pred             EEECCCCCchhccch-----------hhheeecC-CccEEEecCCCCcccccccccceecccCceEeeeeeeecCCCeee
Confidence            578999999887643           25666655 33332    123323323333        3899999999999999


Q ss_pred             eEEEEEe
Q 032714           82 WKYVSSF   88 (135)
Q Consensus        82 WKYe~A~   88 (135)
                      +..+..-
T Consensus        83 YhV~~PC   89 (150)
T PF14976_consen   83 YHVVVPC   89 (150)
T ss_pred             eEEEEEc
Confidence            9777553

>COG0229 Conserved domain frequently associated with peptide methionine sulfoxide reductase [Posttranslational modification, protein turnover, chaperones]

Probab=86.02  E-value=0.91  Score=35.55  Aligned_cols=82  Identities=18%  Similarity=0.389  Sum_probs=54.7

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      +-+|.|+.|..+|=.+++    -|.-..|=--.+.-+..-.+...+|+  .-||+.+ .|.|..|+..||--.+.--.++
T Consensus        40 ~GiY~c~~cg~pLF~S~~----KfdSgcGWPSF~~pi~~~~I~~~~D~--S~gM~Rt-EVrc~~c~sHLGHVF~DGP~~t  112 (140)
T COG0229          40 KGIYVCIVCGEPLFSSED----KFDSGCGWPSFTKPISPDAITYKEDR--SHGMVRT-EVRCANCDSHLGHVFPDGPPPT  112 (140)
T ss_pred             CceEEeecCCCccccccc----cccCCCCCccccccCCcccceEeecc--CCCcEEE-EEEecCCCCccccccCCCCCCC
Confidence            459999999999987765    34444444333444433333333343  3466655 6899999999998776666666


Q ss_pred             c-cccccccc
Q 032714           92 F-SCFCSENL  100 (135)
Q Consensus        92 q-~~~c~~~l  100 (135)
                      - +|-|+|-.
T Consensus       113 gglRYCINSa  122 (140)
T COG0229         113 GGLRYCINSA  122 (140)
T ss_pred             CCeeEeecch
Confidence            6 79998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3e0o_A	144	Peptide methionine sulfoxide reductase MSRB; oxido	95.29
3cxk_A	164	Methionine-R-sulfoxide reductase; structural genom	93.91
3mao_A	105	Methionine-R-sulfoxide reductase B1; oxidoreductas	93.83
3hcg_A	146	Peptide methionine sulfoxide reductase MSRA/MSRB;	93.53
2kao_A	124	Methionine-R-sulfoxide reductase B1; mouse reduced	93.2
2kv1_A	124	Methionine-R-sulfoxide reductase B1; MSRB1, SELR,	93.11
2k8d_A	151	Peptide methionine sulfoxide reductase MSRB; therm	92.91
3e0m_A	313	Peptide methionine sulfoxide reductase MSRA/MSRB 1	92.2
3eqt_A	145	ATP-dependent RNA helicase DHX58; innate immunity,	91.5
2l1u_A	143	MSRB2, methionine-R-sulfoxide reductase B2, mitoch	90.87
3hcj_A	154	MSRB, peptide methionine sulfoxide reductase; meth	90.79
3ga3_A	133	Interferon-induced helicase C domain-containing pr	89.99
2qfd_A	145	Probable ATP-dependent RNA helicase DDX58; zinc fi	85.95
3lrr_A	121	Probable ATP-dependent RNA helicase DDX58; innate	84.74
4a2v_A	131	RIG-I, retinoic acid inducible protein I; hydrolas	83.01

>3e0o_A Peptide methionine sulfoxide reductase MSRB; oxidoreductase; 2.60A {Bacillus subtilis} SCOP: b.88.1.3 PDB: 1xm0_A 2kzn_A

Probab=95.29  E-value=0.0092  Score=45.50  Aligned_cols=82  Identities=11%  Similarity=0.155  Sum_probs=55.6

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+-+ .+...+|..  -|+.. ..|.|..|+..||--.....+++
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~pi~~-~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt  111 (144)
T 3e0o_A           40 EGLYVDIVSGKPLFTSKD----KFDSQCGWPSFTKPIEE-EVEEKLDTS--HGMIR-TEVRSRTADSHLGHVFNDGPGPN  111 (144)
T ss_dssp             SEEEEETTTCCEEEETTT----BCCCTTSSCEESCCSTT-TEEEEEECC--TTSCE-EEEEETTTCCEEEEEESCCSSTT
T ss_pred             CEEEEeCCCCcccccCcc----cccCCCCCcccCchhcc-ceEEeecCC--CCceE-EEEEcCCCCCccCCccCCCCCCC
Confidence            358999999999977764    35444554333444433 222333432  35543 46999999999999887777788


Q ss_pred             cccccccccc
Q 032714           92 FSCFCSENLS  101 (135)
Q Consensus        92 q~~~c~~~l~  101 (135)
                      ..|.|+|-+.
T Consensus       112 g~RyCiNS~s  121 (144)
T 3e0o_A          112 GLRYCINSAA  121 (144)
T ss_dssp             CCEEEECGGG
T ss_pred             CCEeeeceee
Confidence            8899998543

>3cxk_A Methionine-R-sulfoxide reductase; structural genomics, MSRB, oxidoreductase, MIC labcard, PSI-2, protein structure initiative; 1.70A {Burkholderia pseudomallei strain} PDB: 3cez_A

Probab=93.91  E-value=0.027  Score=43.76  Aligned_cols=83  Identities=16%  Similarity=0.356  Sum_probs=54.0

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEe-cc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSF-QP   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~-E~   90 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+-+-.+...+|..  -|+. -..|.|..|+..||=-+.... .+
T Consensus        71 ~GiY~C~~Cg~pLF~S~~----KFdSGcGWPSF~~pi~~~~V~~~~D~s--~gm~-RtEV~C~~Cg~HLGHVF~DGP~~p  143 (164)
T 3cxk_A           71 AGIYHCVVCGTALFESGA----KYHSGCGWPSYFKPIDGEVIDEKMDYT--HGMT-RVEVRCNQCGAHLGHVFEDGPRDK  143 (164)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSTTSEEEEEECG--GGCC-EEEEEETTTCCEEEEEESCSCTTT
T ss_pred             CeEEEccCCCccccCCch----hccCCCCCcccCcccCCCceEEeECCC--CCcE-EEEEEeCCCCCccCcccCCCCCCC
Confidence            358999999999977764    354445544444433221222233332  2553 456999999999999877655 56


Q ss_pred             ccccccccccc
Q 032714           91 FFSCFCSENLS  101 (135)
Q Consensus        91 sq~~~c~~~l~  101 (135)
                      +-.|.|+|-+.
T Consensus       144 tg~RyCINS~s  154 (164)
T 3cxk_A          144 TGLRYCINSAA  154 (164)
T ss_dssp             TSCEEEECGGG
T ss_pred             CCCEEeeceee
Confidence            77899998643

>3mao_A Methionine-R-sulfoxide reductase B1; oxidoreductase, structural genomics consortium, SGC, cytoplasm, metal-binding, nucleus, selenocysteine, zinc; HET: MLI; 1.42A {Homo sapiens}

Probab=93.83  E-value=0.034  Score=40.35  Aligned_cols=86  Identities=16%  Similarity=0.199  Sum_probs=53.3

Q ss_pred             eccCC--CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEE
Q 032714            7 VELKG--RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY   84 (135)
Q Consensus         7 ~yL~g--~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKY   84 (135)
                      .|.+.  +-+|.|+.|.++|=.+++    -|....|=.-.+..+-.-.+...++.   .++ .-..|.|..|+..||--+
T Consensus         4 ~y~~~~~~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~---~~~-~RtEV~C~~C~~HLGHVF   75 (105)
T 3mao_A            4 VFQNHFEPGVYVCAKCGYELFSSRS----KYAHSSPWPAFTETIHADSVAKRPEH---NRS-EALKVSCGKCGNGLGHEF   75 (105)
T ss_dssp             CCTTCCCSEEEEETTTCCEEEEGGG----EECCSSSSCEESCCSSTTSEEEEECT---TST-TEEEEEETTTCCEEEEEE
T ss_pred             cccCCCCCEEEEcCCCCCccccCCc----ccCCCCCChhhccccCCCceEEEecC---CCC-CEEEEEeCCCCCccCccc
Confidence            34443  458999999999877764    35544554433443321111111121   122 236899999999999877


Q ss_pred             -EEEecccccccccccc
Q 032714           85 -VSSFQPFFSCFCSENL  100 (135)
Q Consensus        85 -e~A~E~sq~~~c~~~l  100 (135)
                       .....++-.|.|+|-+
T Consensus        76 ~~DGP~ptg~RyCiNS~   92 (105)
T 3mao_A           76 LNDGPKPGQSRFSIFSS   92 (105)
T ss_dssp             TTCSSSTTCCEEEECGG
T ss_pred             CCCCcCCCCCEEeeCee
Confidence             4556678889999854

>3hcg_A Peptide methionine sulfoxide reductase MSRA/MSRB; PILB, methionine sulfoxide reductase B, reduced form, disulfide bond; 1.82A {Neisseria meningitidis serogroup A} SCOP: b.88.1.3 PDB: 3hch_A* 1l1d_A

Probab=93.53  E-value=0.052  Score=41.40  Aligned_cols=83  Identities=8%  Similarity=0.075  Sum_probs=52.6

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEec-c
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQ-P   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E-~   90 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+-.-.+...+|+.  -|+.. ..|.|..|+..||=-...... +
T Consensus        41 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~~~  113 (146)
T 3hcg_A           41 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDFS--YNMRR-TEVRSHAADSHLGHVFPDGPRDK  113 (146)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSGGGEEEEEEEE--TTEEE-EEEEETTTCCEEEEEESCSCGGG
T ss_pred             CEEEEecCCCcccccCcc----cccCCCCChhhccccCCCceEEeecCC--CCcEE-EEEEeCCCCCccCceeCCCCCCC
Confidence            458999999999877763    455555544444433211111223332  24443 478999999999987765544 3


Q ss_pred             ccccccccccc
Q 032714           91 FFSCFCSENLS  101 (135)
Q Consensus        91 sq~~~c~~~l~  101 (135)
                      +-.|.|+|-+.
T Consensus       114 tg~RyCiNS~s  124 (146)
T 3hcg_A          114 GGLRYCINGAS  124 (146)
T ss_dssp             TSCEEEECGGG
T ss_pred             CCCEEeeeeEE
Confidence            67799998543

>2kv1_A Methionine-R-sulfoxide reductase B1; MSRB1, SELR, metal-binding, nucleus, oxidoreductase, seleniu; NMR {Mus musculus}

Probab=93.11  E-value=0.043  Score=40.91  Aligned_cols=81  Identities=16%  Similarity=0.213  Sum_probs=50.6

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEE-EEEecc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKY-VSSFQP   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKY-e~A~E~   90 (135)
                      +-+|.|+.|.++|=.+++=    |....|=.-.+..+-.-.+-..+++   .|+. ...|.|+.|+..||=-. ..-..+
T Consensus        18 ~G~Y~C~~Cg~pLF~S~~K----fdSg~GWPSF~~~i~~~~v~~~~d~---~~~~-r~Ev~C~~Cg~HLGHVF~~DGP~p   89 (124)
T 2kv1_A           18 PGVYVCAKCSYELFSSHSK----YAHSSPWPAFTETIHPDSVTKCPEK---NRPE-ALKVSCGKCGNGLGHEFLNDGPKR   89 (124)
T ss_dssp             CEEEEETTTCCBCCCTTSC----CCCCSSSCCBSCCCCCSSCEEEECS---SSTT-CEEEECTTTTCCCEEECTTSCTTT
T ss_pred             CEEEEecCCCCcccccCCc----ccCCCCCceeecccccceEEEEecc---CCce-EEEEEEecCCCccCCccCCCCCCC
Confidence            3599999999999887753    4444443222332211111112222   2222 35799999999999876 456677


Q ss_pred             cccccccccc
Q 032714           91 FFSCFCSENL  100 (135)
Q Consensus        91 sq~~~c~~~l  100 (135)
                      +-.|.|+|-+
T Consensus        90 tg~RyCINS~   99 (124)
T 2kv1_A           90 GQSRFCIFSS   99 (124)
T ss_dssp             TCSCEECCTT
T ss_pred             CCCEEeecce
Confidence            8889999854

>2k8d_A Peptide methionine sulfoxide reductase MSRB; thermophilic, Zn binding, metal-binding, oxidoreductase; NMR {Methanothermobacter thermautotrophicusorganism_taxid}

Probab=92.91  E-value=0.042  Score=42.17  Aligned_cols=83  Identities=19%  Similarity=0.451  Sum_probs=54.2

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.-.+..+-.-.+...+|..  -|+.. ..|.|..|+..||--+.....++
T Consensus        59 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~V~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt  131 (151)
T 2k8d_A           59 DGIYRCICCGTDLFDSET----KFDSGTGWPSFYDVVSEHNIKLREDRS--LGMVR-CEVLCARCDAHLGHVFDDGPRPT  131 (151)
T ss_dssp             CSEEEETTTTEEEEEGGG----SCCSTTCCSEESCCSCTTSEECCCCBT--TSSCE-EEEEETTEEEEEEEEEECSSSSS
T ss_pred             CEEEEecCCCCcccCCcc----cccCCCCCcccCcccCCCceEEeeCCC--CCceE-EEEEeCCCCCcCCcccCCCCCCC
Confidence            358999999999877764    355455543334443221122223332  24443 46999999999999887766677


Q ss_pred             cccccccccc
Q 032714           92 FSCFCSENLS  101 (135)
Q Consensus        92 q~~~c~~~l~  101 (135)
                      -.|.|+|-+.
T Consensus       132 g~RyCINS~s  141 (151)
T 2k8d_A          132 GKRYCMNSAA  141 (151)
T ss_dssp             CEEEEECSTT
T ss_pred             CCEEeeceee
Confidence            7899998643

>3e0m_A Peptide methionine sulfoxide reductase MSRA/MSRB 1; fusion, msrab, linker, hinge, cell membrane, membrane, multifunctional enzyme, oxidoreductase; 2.40A {Streptococcus pneumoniae}

Probab=92.20  E-value=0.068  Score=45.08  Aligned_cols=83  Identities=12%  Similarity=0.095  Sum_probs=53.4

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEe-cc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSF-QP   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~-E~   90 (135)
                      +-+|.|+.|.++|=.+++    -|....|=--.+..+-.-.+...+|+.  -|+.. ..|.|..|+..||=-..... ++
T Consensus       207 ~G~Y~c~~cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~D~s--~gm~R-tEv~c~~c~~HLGHVF~DGp~~p  279 (313)
T 3e0m_A          207 EGIYVDITTGEPLFFAKD----KFASGCGWPSFSRPLSKELIHYYKDLS--HGMER-IEVRSRSGSAHLGHVFTDGPREL  279 (313)
T ss_dssp             SEEEEETTTCCEEEEGGG----BCCCCSSSCEESSCSSGGGEEEEEECC--TTCCE-EEEEESSSCCEEEEEESCSCTTT
T ss_pred             CeEEEecCCCccccCCCc----cccCCCCCcccCcccCCCceEEeecCC--CCcEE-EEEECCCCCCccCcccCCCCCCC
Confidence            458999999999877653    355444543333333111111123332  25543 47999999999998877665 67


Q ss_pred             ccccccccccc
Q 032714           91 FFSCFCSENLS  101 (135)
Q Consensus        91 sq~~~c~~~l~  101 (135)
                      +..|.|+|-+.
T Consensus       280 tg~RyCiNs~s  290 (313)
T 3e0m_A          280 GGLRYCINSAS  290 (313)
T ss_dssp             TSCEEEECGGG
T ss_pred             CCCEEeeceee
Confidence            88899998543

>3eqt_A ATP-dependent RNA helicase DHX58; innate immunity, RIG-I-like helicases, viral RNA detection, LGP2/dsRNA complex, ATP-binding, coiled coil; 2.00A {Homo sapiens} PDB: 2w4r_A 2rqa_A

Probab=91.50  E-value=0.076  Score=40.36  Aligned_cols=94  Identities=14%  Similarity=0.144  Sum_probs=52.0

Q ss_pred             ccCCCcEEeccCCCCccCCCCCeece--eeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEE
Q 032714            8 ELKGRSYYKCRFCNSHLALADSVLSW--SFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYV   85 (135)
Q Consensus         8 yL~g~~~y~C~~C~tHLA~~~elISK--~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe   85 (135)
                      +.++.-.+.|++|.+.++..+||-.-  +-+=--+++  |...+.+..+|..--....+...-..|.|..|++.+|-  .
T Consensus         7 ~~~s~vkllCrkC~~~~C~g~DIr~ie~~HhVnv~p~--F~~~y~~~~~~~~~~k~f~d~~~~g~I~C~~Cgq~WG~--~   82 (145)
T 3eqt_A            7 FPVEHVQLLCINCMVAVGHGSDLRKVEGTHHVNVNPN--FSNYYNVSRDPVVINKVFKDWKPGGVISCRNCGEVWGL--Q   82 (145)
T ss_dssp             CCGGGCEEEETTTCCEEEEGGGEEEETTTEEEECCGG--GGGGEEEEEEECCCSSCCSSEEEEEEEEETTTCCEEEE--E
T ss_pred             CCchheEEECCCCCeeEEeccceEEeccceEEeeChh--heeeEEeccCCCCCCcccccccCCcEEEchhhChhhHh--h
Confidence            34445679999999999999997432  111001111  11223332222211111355577888999999998665  4


Q ss_pred             EEeccccc-----cccccccccccccc
Q 032714           86 SSFQPFFS-----CFCSENLSNISGAA  107 (135)
Q Consensus        86 ~A~E~sq~-----~~c~~~l~~~~~~~  107 (135)
                      --|-..++     +.+.  |++.+|.-
T Consensus        83 m~yk~~~LP~LkIksFV--ve~~~g~~  107 (145)
T 3eqt_A           83 MIYKSVKLPVLKVRSML--LETPQGRI  107 (145)
T ss_dssp             EEETTEEEEEECGGGEE--EEETTEEE
T ss_pred             EEeccccCceEeEEEEE--EEcCCCcE
Confidence            45555443     4444  35555543

>2l1u_A MSRB2, methionine-R-sulfoxide reductase B2, mitochondria; methionine sulfoxide reductase, oxidoreductase; NMR {Mus musculus}

Probab=90.87  E-value=0.09  Score=39.96  Aligned_cols=82  Identities=18%  Similarity=0.375  Sum_probs=51.4

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccC--------CCCcccceeeccccEEEeeeeeeecCCceeeE
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNI--------MLGPQEERLMLSGMHTVEDIFCCCCGQIVGWK   83 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv--------~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWK   83 (135)
                      +-+|.|+.|.++|=.+++    -|.-..|=.- |.+.+++        .+...+|.  .-|+.. ..|.|..|+..||=-
T Consensus        35 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPS-F~~pi~~~~~~~~~~~V~~~~D~--s~gm~R-tEV~C~~Cg~HLGHV  106 (143)
T 2l1u_A           35 TGMYHCVCCDSPLFSSEK----KYCSGTGWPS-FSEAYGSKGSDESHTGILRRLDT--SLGCPR-MEVVCKQCEAHLGHV  106 (143)
T ss_dssp             CEEEEESSSSCEEEEGGG----BCTTTTCCSB-BSSCCSCCTTHHHHTCEEEEEEC--TTSSCE-EEEEESSSCCCCEEE
T ss_pred             CeEEEeCCCCCeeecCcc----cccCCCCChh-hchhhccccccCCCCceEEeecc--cCCceE-EEEEECCCCCcCCcc
Confidence            358999999999877765    3443334322 2222321        11112222  224443 469999999999998


Q ss_pred             EEEEeccccccccccccc
Q 032714           84 YVSSFQPFFSCFCSENLS  101 (135)
Q Consensus        84 Ye~A~E~sq~~~c~~~l~  101 (135)
                      +.....++-.|.|+|-+.
T Consensus       107 F~DGP~ptg~RyCINS~s  124 (143)
T 2l1u_A          107 FPDGPKPTGQRFCINSVA  124 (143)
T ss_dssp             ECCSSCGGGCEEEECCTT
T ss_pred             cCCCCCCCCCEEEeeeeE
Confidence            877666777899998653

>3hcj_A MSRB, peptide methionine sulfoxide reductase; methionine sulfoxide reductase B, oxidized form, oxidoreductase; 1.66A {Xanthomonas campestris PV} PDB: 3hci_A*

Probab=90.79  E-value=0.049  Score=41.92  Aligned_cols=83  Identities=20%  Similarity=0.415  Sum_probs=51.2

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      +-+|.|+.|.++|=.+++    -|....|=--.+..+-.-.+...+|..  -|+.. ..|.|..|+..||--......++
T Consensus        48 ~G~Y~C~~Cg~pLF~S~~----KFdSg~GWPSF~~pi~~~~v~~~~D~s--~gm~R-tEV~C~~Cg~HLGHVF~DGP~pt  120 (154)
T 3hcj_A           48 DGVYTCRLCGLPLFRSNA----KFDSGTGWPSFFAPYDPAHVREIRDTS--YGMIR-TEIVCARCDSHLGHVFPDGPPPT  120 (154)
T ss_dssp             SEEEEETTTCCEEEEECT----TCCCCTTSSTTEEESCGGGEEEECCTT--TTTSC-EEEEETTTCCEEEEEESCSCTTT
T ss_pred             CEEEEccCCCCccccCcc----cccCCCCCcccccccCccceEEeecCC--CCceE-EEEEeCCCCCccCCccCCCCCCC
Confidence            358999999999977764    243333432222222111111112221  24432 47899999999998887777778


Q ss_pred             cccccccccc
Q 032714           92 FSCFCSENLS  101 (135)
Q Consensus        92 q~~~c~~~l~  101 (135)
                      -.|.|+|-+.
T Consensus       121 g~RyCiNS~s  130 (154)
T 3hcj_A          121 GERHCLNSVS  130 (154)
T ss_dssp             TCEEEECGGG
T ss_pred             CCEeeeceee
Confidence            8899998543

>3ga3_A Interferon-induced helicase C domain-containing protein 1, MDA5; innate immune receptor, RNA biniding, RLR, alternative splicing, antiviral defense; 1.45A {Homo sapiens} PDB: 2rqb_A

Probab=89.99  E-value=0.31  Score=36.49  Aligned_cols=79  Identities=10%  Similarity=0.172  Sum_probs=47.1

Q ss_pred             cCCCcEEeccCCCCccCCCCCeec--eeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEE
Q 032714            9 LKGRSYYKCRFCNSHLALADSVLS--WSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVS   86 (135)
Q Consensus         9 L~g~~~y~C~~C~tHLA~~~elIS--K~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~   86 (135)
                      .++.=.+.|++|.+.++..+||-.  .+-+=--+++|  ...+.+..-+...+. ..+..+-..|.|. |++.+|-  +-
T Consensus         7 ~~s~vkllCrkC~~~~C~g~DIR~ie~~HhVnv~p~F--~~~y~~~~~~~~~k~-f~d~~~~g~I~C~-Cgq~WG~--~m   80 (133)
T 3ga3_A            7 NPSLITFLCKNCSVLACSGEDIHVIEKMHHVNMTPEF--KELYIVRENKALQKK-CADYQINGEIICK-CGQAWGT--MM   80 (133)
T ss_dssp             CGGGEEEEETTTCCEEEEGGGCEEETTTEEECCCTGG--GGSEEEECCTTTCEE-CSSCEEEEEEEET-TSCEEEE--EE
T ss_pred             CcceEEEEccCCCeeEEeccceEEeccceEEeeChhh--eeeEEecCCCCccch-hccccCCceEEEe-cCChhhh--hE
Confidence            344446999999999999999732  22221111221  233434322223333 4667888999999 9998665  44


Q ss_pred             Eeccccc
Q 032714           87 SFQPFFS   93 (135)
Q Consensus        87 A~E~sq~   93 (135)
                      -|-..++
T Consensus        81 ~yk~~~L   87 (133)
T 3ga3_A           81 VHKGLDL   87 (133)
T ss_dssp             EETTEEE
T ss_pred             EeccccC
Confidence            4555443

>2qfd_A Probable ATP-dependent RNA helicase DDX58; zinc finger, alternative splicing, antiviral defense, ATP- binding, hydrolase, immune response; 2.70A {Homo sapiens} PDB: 2qfb_A

Probab=85.95  E-value=0.4  Score=36.36  Aligned_cols=68  Identities=21%  Similarity=0.385  Sum_probs=44.1

Q ss_pred             CcEEeccCCCCccCCCCCe----------eceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCc
Q 032714           12 RSYYKCRFCNSHLALADSV----------LSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQI   79 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~el----------ISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~   79 (135)
                      .-.+.|++|.+.+++.+||          +.+.|.          ..+.+..-+. .+. .-+..+-..|+|.  .|++.
T Consensus        25 ~v~llCrkC~~~~C~g~DIrvie~~HhV~v~p~F~----------~~y~v~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~   92 (145)
T 2qfd_A           25 NKKLLCRKCKALACYTADVRVIEECHYTVLGDAFK----------ECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHD   92 (145)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSTTGG----------GTEEEEECSS-CCC-CSSEEEEEEEEECSTTTCCE
T ss_pred             ceEEEccCCCeeEEcccceeEecCCcEEecCcCce----------eeEEEcCCcc-cch-hhceeCCceEEeCCcccCcc
Confidence            3469999999999999998          444543          2222321111 111 4455788899999  99997


Q ss_pred             eeeEEEEEeccccc
Q 032714           80 VGWKYVSSFQPFFS   93 (135)
Q Consensus        80 LGWKYe~A~E~sq~   93 (135)
                      +|-  +--|-..++
T Consensus        93 WG~--~m~yk~~~l  104 (145)
T 2qfd_A           93 WGI--HVKYKTFEI  104 (145)
T ss_dssp             EEE--EEEETTEEE
T ss_pred             hhc--eEEEccccC
Confidence            776  455555553

>3lrr_A Probable ATP-dependent RNA helicase DDX58; innate immunity, viral RNA, RIG-I like receptors, antiviral ATP-binding, helicase, hydrolase; HET: ATP; 2.15A {Homo sapiens} PDB: 3lrn_A* 3og8_A 2rmj_A 3ncu_A*

Probab=84.74  E-value=0.54  Score=34.52  Aligned_cols=76  Identities=20%  Similarity=0.330  Sum_probs=45.0

Q ss_pred             CCcEEeccCCCCccCCCCCee--ceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCceeeEEEE
Q 032714           11 GRSYYKCRFCNSHLALADSVL--SWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVS   86 (135)
Q Consensus        11 g~~~y~C~~C~tHLA~~~elI--SK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~LGWKYe~   86 (135)
                      +...+.|++|.+.++..+||-  .++-+=--+++|  ...+.+.+.+. .+. .-+.++-..|.|.  .|++.+|-  .-
T Consensus         2 ~~~~llC~kC~~~~C~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~--~m   75 (121)
T 3lrr_A            2 ENKKLLCRKCKALACYTADVRVIEESHYTVLGDAF--KECFVSRPHPK-PKQ-FSSFEKRAKIFCARQNCSHDWGI--HV   75 (121)
T ss_dssp             CCEEEEETTTCCEEEEGGGEEEETTTEEEECSHHH--HTTEEEEECSS-CCE-ETTEEEEEEEEECSTTTCCEEEE--EE
T ss_pred             CCEEEECCCCCeEEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhh--eE
Confidence            346789999999999999973  222111111111  12233322222 222 3466788899999  99998665  44


Q ss_pred             Eecccc
Q 032714           87 SFQPFF   92 (135)
Q Consensus        87 A~E~sq   92 (135)
                      -|-..+
T Consensus        76 ~yk~~~   81 (121)
T 3lrr_A           76 KYKTFE   81 (121)
T ss_dssp             EETTEE
T ss_pred             Eecccc
Confidence            455544

>4a2v_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 1.44A {Anas platyrhynchos} PDB: 4a2x_A

Probab=83.01  E-value=0.8  Score=34.11  Aligned_cols=75  Identities=15%  Similarity=0.268  Sum_probs=43.7

Q ss_pred             CcEEeccCCCCccCCCCCee--ceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeee--ecCCceeeEEEEE
Q 032714           12 RSYYKCRFCNSHLALADSVL--SWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCC--CCGQIVGWKYVSS   87 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elI--SK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~--~C~t~LGWKYe~A   87 (135)
                      ...+.|++|.+.++..+||-  .++-+=--+++|  ...+.+.+.+. .+. .-+.++-..|.|.  +|++.+|-  +--
T Consensus         5 ~~kllCrkC~~~vC~g~DIr~ie~~HhVnv~p~F--~~~y~~~~~~~-~k~-f~d~~~~g~I~C~~~~Cg~~WG~--~m~   78 (131)
T 4a2v_A            5 QKNLLCGKCKAYACSTDDIRIIKDSHHIVLGEAF--KERYTTKPHKK-PMQ-FDGFEKKSKMYCRNNNCQHDWGI--TVK   78 (131)
T ss_dssp             CCEEEETTTCCEEEEGGGEEEETTTEEEECSSGG--GGGEEEEECCC-CCC-TTSEEEEEEEEESCTTTCCEEEE--EEE
T ss_pred             ceEEEccCCCeeEEeccceEEeecceEEeeChhh--eeeEEecCCCC-Cch-hhcccCCcEEEeCccccChhhhh--hEe
Confidence            46789999999999999973  222111111111  12222222221 222 3456788899999  99998665  444


Q ss_pred             ecccc
Q 032714           88 FQPFF   92 (135)
Q Consensus        88 ~E~sq   92 (135)
                      |-..+
T Consensus        79 yk~~~   83 (131)
T 4a2v_A           79 YLTFD   83 (131)
T ss_dssp             ETTEE
T ss_pred             ecCcc
Confidence            55544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1l1da_	144	C-terminal MsrB domain of peptide methionine sulfo	94.42
d1xm0a1	143	Peptide methionine sulfoxide reductase MsrB {Bacil	94.05

>d1l1da_ b.88.1.3 (A:) C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB {Neisseria gonorrhoeae [TaxId: 485]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: C-terminal MsrB domain of peptide methionine sulfoxide reductase PilB
species: Neisseria gonorrhoeae [TaxId: 485]

Probab=94.42  E-value=0.011  Score=43.10  Aligned_cols=82  Identities=7%  Similarity=0.059  Sum_probs=51.1

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEecc-
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQP-   90 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~-   90 (135)
                      .-+|.|+.|.++|=.+++    -|.-..|=.-.+..+-+-.+...++.  .-|+-. ..|.|..|+..||=-......+ 
T Consensus        40 ~G~Y~C~~Cg~pLF~S~~----KfdSg~GWPSF~~~i~~~~v~~~~d~--s~gm~R-~Ev~C~~Cg~HLGHVF~DGp~~~  112 (144)
T d1l1da_          40 PGIYVDVVSGEPLFSSAD----KYDSGCGWPSFTRPIDAKSVTEHDDF--SFNMRR-TEVRSRAADSHLGHVFPDGPRDK  112 (144)
T ss_dssp             SEEEEETTTCCEEEEGGG----EECCSSSSCEESSCSSTTSEEEEEEC--CTTSCE-EEEEETTTCCEEEEEESCSCGGG
T ss_pred             cCceEeccccceeeehhh----cccCCccceeeccccccccccceecc--cccccc-eeeEecCCCCccCcccCCCCCCC
Confidence            458999999999987664    25444443333343333222222221  224433 3799999999999877766533 


Q ss_pred             cccccccccc
Q 032714           91 FFSCFCSENL  100 (135)
Q Consensus        91 sq~~~c~~~l  100 (135)
                      +..|.|+|-+
T Consensus       113 ~~~RyCiNs~  122 (144)
T d1l1da_         113 GGLRYCINGA  122 (144)
T ss_dssp             TSCEEEECGG
T ss_pred             CCCEecccee
Confidence            5779999854

>d1xm0a1 b.88.1.3 (A:1-143) Peptide methionine sulfoxide reductase MsrB {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: Mss4-like
superfamily: Mss4-like
family: SelR domain
domain: Peptide methionine sulfoxide reductase MsrB
species: Bacillus subtilis [TaxId: 1423]

Probab=94.05  E-value=0.012  Score=42.80  Aligned_cols=81  Identities=11%  Similarity=0.132  Sum_probs=50.4

Q ss_pred             CcEEeccCCCCccCCCCCeeceeeecCCCeEEEeeccccCCCCcccceeeccccEEEeeeeeeecCCceeeEEEEEeccc
Q 032714           12 RSYYKCRFCNSHLALADSVLSWSFNCRRGRAYLFSDVVNIMLGPQEERLMLSGMHTVEDIFCCCCGQIVGWKYVSSFQPF   91 (135)
Q Consensus        12 ~~~y~C~~C~tHLA~~~elISK~F~G~~GrAyLf~~vvNv~~G~~e~R~m~TG~HtV~DI~C~~C~t~LGWKYe~A~E~s   91 (135)
                      +-+|.|+.|.++|=.+++=    |.-..|=.--+..+-+-.. ..+|..  -|+ .=..|.|..|+..||=-......++
T Consensus        39 ~G~Y~C~~C~~pLF~S~~K----fdSg~GWPSF~~~i~~~v~-~~~D~s--~gm-~R~Ev~C~~Cg~HLGHVF~DGp~pt  110 (143)
T d1xm0a1          39 EGLYVDIVSGKPLFTSKDK----FDSQCGWPSFTKPIEEEVE-EKLDTS--HGM-IRTEVRSRTADSHLGHVFNDGPGPN  110 (143)
T ss_dssp             SEEEEESSTTCEEEETTTC----CCCCSSSCCEEESCCCSEE-EECCCC--TTC-CCCEEEESSCTTCCCEEEESCSSSS
T ss_pred             CceEEeccccchhhhhhhh----hccCCccceeecccccceE-EEecCC--CCc-cccceEecCCCCccCccCCCCCCCC
Confidence            3589999999999877652    3333333222333222111 112211  122 1257899999999998777677778


Q ss_pred             ccccccccc
Q 032714           92 FSCFCSENL  100 (135)
Q Consensus        92 q~~~c~~~l  100 (135)
                      ..|.|+|-+
T Consensus       111 g~RyCINs~  119 (143)
T d1xm0a1         111 GLRYCINSA  119 (143)
T ss_dssp             CEEEECCGG
T ss_pred             CcEeeeeee
Confidence            889999854