Citrus Sinensis ID: 032724

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKVL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccHHHccccccHHHHHHHHHHHHHHHHHHHHcEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHccccEEcHHHHHHHHcccccHHHHHHHHHHHHHHHHHHccHHHHHccc
Coil and Loop (DISEMBL)
mdgpvggsrasggngmvsnqandtttvaaddpkqnLNQVINSVQKTLGLLHQLYLTVssfnaasqlPLLQRLNSLVSELDNMVklsekcniqvpTEVLnliddgknpdefTRDVINSCIaknqvtkgktdafkvl
Flexible Loop (DISEMBL)
mdgpvggsrasggngmvSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINsciaknqvtkgktdafkvl
Low Complexity Region (SEG)
MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKVL
Disordered region (IsUnstruct)
************************************NQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKN*************
Disordered Region (DISOPRED)
****************************************NSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIA**QV*KGKTDAFKVL
Disordered Region (DISEMBL)
***********GGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKVL
Disordered Region (DISPRO)
******************************DPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKVL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKVL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
F4HPA7	189	Mediator of RNA polymeras	yes	no	0.918	0.656	0.753	2e-49
Q9FHZ2	186	Mediator of RNA polymeras	no	no	0.888	0.645	0.731	4e-42
Q16G71	130	Mediator of RNA polymeras	N/A	no	0.733	0.761	0.343	8e-11
Q7Q5R5	130	Mediator of RNA polymeras	yes	no	0.733	0.761	0.343	1e-10
Q9CXU0	135	Mediator of RNA polymeras	yes	no	0.740	0.740	0.336	6e-10
Q6DJ25	135	Mediator of RNA polymeras	yes	no	0.688	0.688	0.372	7e-10
Q6IP67	135	Mediator of RNA polymeras	N/A	no	0.740	0.740	0.346	8e-10
Q4R6W4	135	Mediator of RNA polymeras	N/A	no	0.740	0.740	0.336	9e-10
Q5R6P5	135	Mediator of RNA polymeras	yes	no	0.740	0.740	0.336	1e-09
Q9BTT4	135	Mediator of RNA polymeras	yes	no	0.740	0.740	0.336	1e-09

>sp|F4HPA7|MD10B_ARATH Mediator of RNA polymerase II transcription subunit 10b OS=Arabidopsis thaliana GN=MED10B PE=1 SV=1

 Score =  194 bits (492), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 2/126 (1%)

Query: 12  GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
           G NG +  Q ND  +T   ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQL LL
Sbjct: 13  GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 72

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 73  QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132

Query: 130 DAFKVL 135
           DAFK L
Sbjct: 133 DAFKDL 138

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHZ2|MD10A_ARATH Mediator of RNA polymerase II transcription subunit 10a OS=Arabidopsis thaliana GN=MED10A PE=1 SV=1

 Score =  169 bits (429), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 90/123 (73%), Positives = 99/123 (80%), Gaps = 3/123 (2%)

Query: 14  NGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLN 73
           NG +  + N   TV  DD  + LNQ+INS QK L LLHQL LTVSSF  ASQL LLQRLN
Sbjct: 15  NGSIKTEINAIATV--DDSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLN 72

Query: 74  SLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVIN-SCIAKNQVTKGKTDAF 132
           SLV ELDNM KLS+KCNIQVP EVLNLIDDGKNPDEFT+DV+N +CIAKNQVTKGK+DAF
Sbjct: 73  SLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAF 132

Query: 133 KVL 135
           K L
Sbjct: 133 KGL 135

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Arabidopsis thaliana (taxid: 3702)

>sp|Q16G71|MED10_AEDAE Mediator of RNA polymerase II transcription subunit 10 OS=Aedes aegypti GN=MED10 PE=3 SV=1

 Score = 65.9 bits (159), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 32  PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNI 91
           P +NL    N ++  +  + Q+ + VS F    Q  L Q++ SLV+ L  + KL  + ++
Sbjct: 4   PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQVDV 60

Query: 92  QVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
            VP EV + ID G+NP  +T+D I+  + KN+  KGK D+++
Sbjct: 61  NVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Aedes aegypti (taxid: 7159)

>sp|Q7Q5R5|MED10_ANOGA Mediator of RNA polymerase II transcription subunit 10 OS=Anopheles gambiae GN=MED10 PE=3 SV=2

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/102 (34%), Positives = 59/102 (57%), Gaps = 3/102 (2%)

Query: 32  PKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNI 91
           P +NL    N ++  +  + Q+ + VS F    Q  L Q++ SLV+ L  + KL  + ++
Sbjct: 4   PLENLE---NHLEMFIENVRQIRIIVSDFQPQGQNVLNQKIQSLVTGLQEIDKLKNQIDV 60

Query: 92  QVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
            VP EV + ID G+NP  +T+D I+  + KN+  KGK D+++
Sbjct: 61  NVPLEVFDYIDQGRNPQLYTKDCIDKALTKNEEVKGKIDSYR 102

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Anopheles gambiae (taxid: 7165)

>sp|Q9CXU0|MED10_MOUSE Mediator of RNA polymerase II transcription subunit 10 OS=Mus musculus GN=Med10 PE=1 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Mus musculus (taxid: 10090)

>sp|Q6DJ25|MED10_XENTR Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus tropicalis GN=med10 PE=2 SV=1

 Score = 62.8 bits (151), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 41  NSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLN 99
             ++K +  + QL + VS F  +SQ  L Q+LN LV+ L ++ K  ++ + I VP EV +
Sbjct: 10  EHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVTGLQDIDKCRQQLHDITVPLEVFD 69

Query: 100 LIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
            ID G+NP  +T++ +   +AKN+  KGK D  K
Sbjct: 70  YIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus tropicalis (taxid: 8364)

>sp|Q6IP67|MED10_XENLA Mediator of RNA polymerase II transcription subunit 10 OS=Xenopus laevis GN=med10 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/101 (34%), Positives = 59/101 (58%), Gaps = 1/101 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
           +  + + + ++K +  + QL + VS F  +SQ  L Q+LN LV  L ++ K  ++ + I 
Sbjct: 3   EKFDNLEDHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFLVRGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
           VP EV + ID G+NP  +T++ +   +AKN+  KGK D  K
Sbjct: 63  VPLEVFDYIDQGRNPQLYTKECLERALAKNEQVKGKIDTLK 103

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Xenopus laevis (taxid: 8355)

>sp|Q4R6W4|MED10_MACFA Mediator of RNA polymerase II transcription subunit 10 OS=Macaca fascicularis GN=MED10 PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Macaca fascicularis (taxid: 9541)

>sp|Q5R6P5|MED10_PONAB Mediator of RNA polymerase II transcription subunit 10 OS=Pongo abelii GN=MED10 PE=2 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Pongo abelii (taxid: 9601)

>sp|Q9BTT4|MED10_HUMAN Mediator of RNA polymerase II transcription subunit 10 OS=Homo sapiens GN=MED10 PE=1 SV=1

 Score = 62.0 bits (149), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/101 (33%), Positives = 58/101 (57%), Gaps = 1/101 (0%)

Query: 34  QNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQ 92
           +  + +   ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I 
Sbjct: 3   EKFDHLEEHLEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDIT 62

Query: 93  VPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
           VP EV   ID G+NP  +T++ +   +AKN+  KGK D  K
Sbjct: 63  VPLEVFEYIDQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
255573909	187	nut2, putative [Ricinus communis] gi|223	1.0	0.721	0.816	6e-54
224057994	190	predicted protein [Populus trichocarpa]	0.888	0.631	0.859	1e-52
224072323	185	predicted protein [Populus trichocarpa]	0.992	0.724	0.785	1e-52
297742438	284	unnamed protein product [Vitis vinifera]	0.955	0.454	0.776	4e-52
225426586	194	PREDICTED: mediator of RNA polymerase II	0.955	0.664	0.776	8e-52
224114950	164	predicted protein [Populus trichocarpa]	0.992	0.817	0.755	3e-50
297851016	309	T24P13.4 [Arabidopsis lyrata subsp. lyra	0.948	0.414	0.755	3e-50
449527861	166	PREDICTED: mediator of RNA polymerase II	0.955	0.777	0.801	6e-50
9295719	309	T24P13.4 [Arabidopsis thaliana]	0.918	0.401	0.753	4e-48
18396004	189	Mediator complex, subunit Med10 [Arabido	0.918	0.656	0.753	8e-48

>gi|255573909|ref|XP_002527873.1| nut2, putative [Ricinus communis] gi|223532724|gb|EEF34504.1| nut2, putative [Ricinus communis]

 Score =  215 bits (547), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 111/136 (81%), Positives = 115/136 (84%), Gaps = 1/136 (0%)

Query: 1   MDGPVGGSRASGGNGMVSNQANDTTTVAA-DDPKQNLNQVINSVQKTLGLLHQLYLTVSS 59
           MD     +  SGGNGM+ +Q NDT   AA DDPKQNLN VINS+QKTLGLLHQLYLTVSS
Sbjct: 1   MDSSQNATVGSGGNGMLPSQVNDTAAAAAADDPKQNLNNVINSIQKTLGLLHQLYLTVSS 60

Query: 60  FNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCI 119
           FN ASQLPLLQRLN LV ELD M KLSEKCNIQVP EVLNLIDDGKNPDEFTRDVINSCI
Sbjct: 61  FNTASQLPLLQRLNGLVLELDKMAKLSEKCNIQVPLEVLNLIDDGKNPDEFTRDVINSCI 120

Query: 120 AKNQVTKGKTDAFKVL 135
           AKNQVTKGKTDAFK L
Sbjct: 121 AKNQVTKGKTDAFKGL 136

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224057994|ref|XP_002299427.1| predicted protein [Populus trichocarpa] gi|222846685|gb|EEE84232.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 104/121 (85%), Positives = 109/121 (90%), Gaps = 1/121 (0%)

Query: 16  MVSNQANDTTTV-AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNS 74
           M++   NDT    A DDPKQNLNQVINS+QKTLGLLHQLYLTVSSFN ASQLPLLQRLN 
Sbjct: 19  MLAAPVNDTAAATAVDDPKQNLNQVINSIQKTLGLLHQLYLTVSSFNTASQLPLLQRLNG 78

Query: 75  LVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFKV 134
           LV+ELDNMVKLSEKCNIQVP EVLNLIDDGKNPDEF+RDVINSCIAKNQVTKGKTDAFK 
Sbjct: 79  LVTELDNMVKLSEKCNIQVPMEVLNLIDDGKNPDEFSRDVINSCIAKNQVTKGKTDAFKS 138

Query: 135 L 135
           L
Sbjct: 139 L 139

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224072323|ref|XP_002303692.1| predicted protein [Populus trichocarpa] gi|222841124|gb|EEE78671.1| predicted protein [Populus trichocarpa]

 Score =  210 bits (535), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 112/135 (82%), Gaps = 1/135 (0%)

Query: 1   MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSF 60
           MD        SGGNGM++   NDT   A DDPKQNLNQVI+S+QKTLG LHQLYLTVSSF
Sbjct: 1   MDSSQNTVLGSGGNGMLATPLNDTA-AAVDDPKQNLNQVIDSIQKTLGQLHQLYLTVSSF 59

Query: 61  NAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIA 120
           N ASQLPLLQRLN LV+ELDNMVKLSE+CNIQVP EVLNLIDDGKNPDEFTR VINSCI 
Sbjct: 60  NTASQLPLLQRLNGLVTELDNMVKLSERCNIQVPMEVLNLIDDGKNPDEFTRGVINSCIT 119

Query: 121 KNQVTKGKTDAFKVL 135
           KNQVTKGKTD FK L
Sbjct: 120 KNQVTKGKTDGFKSL 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297742438|emb|CBI34587.3| unnamed protein product [Vitis vinifera]

 Score =  209 bits (531), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 114/134 (85%), Gaps = 5/134 (3%)

Query: 7   GSRASGGNGMVSNQANDTTTVA-----ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFN 61
           G+  SGGNG+   Q N     A     ++DPKQNLNQVINS+QKTLGLLHQLYLTVSSFN
Sbjct: 100 GTGVSGGNGITIPQINAAAAAATAGAGSEDPKQNLNQVINSIQKTLGLLHQLYLTVSSFN 159

Query: 62  AASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAK 121
            ASQLPLLQRLN+LVSELDNM KLSEKCNIQVP EVLNLID+GKNPDEFTRDV+NSCIAK
Sbjct: 160 VASQLPLLQRLNALVSELDNMTKLSEKCNIQVPMEVLNLIDEGKNPDEFTRDVLNSCIAK 219

Query: 122 NQVTKGKTDAFKVL 135
           NQ+TKGKTD+FK L
Sbjct: 220 NQITKGKTDSFKGL 233

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426586|ref|XP_002280081.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10 [Vitis vinifera]

 Score =  207 bits (528), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 104/134 (77%), Positives = 114/134 (85%), Gaps = 5/134 (3%)

Query: 7   GSRASGGNGMVSNQANDTTTVA-----ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFN 61
           G+  SGGNG+   Q N     A     ++DPKQNLNQVINS+QKTLGLLHQLYLTVSSFN
Sbjct: 10  GTGVSGGNGITIPQINAAAAAATAGAGSEDPKQNLNQVINSIQKTLGLLHQLYLTVSSFN 69

Query: 62  AASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAK 121
            ASQLPLLQRLN+LVSELDNM KLSEKCNIQVP EVLNLID+GKNPDEFTRDV+NSCIAK
Sbjct: 70  VASQLPLLQRLNALVSELDNMTKLSEKCNIQVPMEVLNLIDEGKNPDEFTRDVLNSCIAK 129

Query: 122 NQVTKGKTDAFKVL 135
           NQ+TKGKTD+FK L
Sbjct: 130 NQITKGKTDSFKGL 143

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114950|ref|XP_002332270.1| predicted protein [Populus trichocarpa] gi|222832035|gb|EEE70512.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 102/135 (75%), Positives = 110/135 (81%), Gaps = 1/135 (0%)

Query: 1   MDGPVGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSF 60
           MD        SGGNGM++   NDT   A DDPKQNLNQVI+S+QKTLG LHQLYLT SSF
Sbjct: 1   MDSSQNTVLGSGGNGMLAAPLNDTA-AAVDDPKQNLNQVIDSIQKTLGQLHQLYLTFSSF 59

Query: 61  NAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIA 120
           N ASQ PLLQRLN LV+ELDNMVKLSE+CNIQVP EVLNLIDDG+NPDEFTR VINSCI 
Sbjct: 60  NTASQPPLLQRLNGLVTELDNMVKLSERCNIQVPMEVLNLIDDGRNPDEFTRAVINSCIT 119

Query: 121 KNQVTKGKTDAFKVL 135
           KNQVTK KTDAFK +
Sbjct: 120 KNQVTKEKTDAFKFI 134

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297851016|ref|XP_002893389.1| T24P13.4 [Arabidopsis lyrata subsp. lyrata] gi|297339231|gb|EFH69648.1| T24P13.4 [Arabidopsis lyrata subsp. lyrata]

 Score =  202 bits (515), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 99/131 (75%), Positives = 112/131 (85%), Gaps = 3/131 (2%)

Query: 5   VGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAAS 64
           +GGS   G NG +  Q ND T+  ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  AS
Sbjct: 151 IGGS---GSNGTIRYQTNDGTSTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPAS 207

Query: 65  QLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQV 124
           QL LLQRLNSLV ELDNM KLSEKCNIQVP EVLNLIDDGKNPDEFT+DV+NSCIA+NQV
Sbjct: 208 QLHLLQRLNSLVMELDNMTKLSEKCNIQVPMEVLNLIDDGKNPDEFTKDVLNSCIARNQV 267

Query: 125 TKGKTDAFKVL 135
           TKGKTDAFK L
Sbjct: 268 TKGKTDAFKDL 278

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449527861|ref|XP_004170927.1| PREDICTED: mediator of RNA polymerase II transcription subunit 10b-like, partial [Cucumis sativus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 105/131 (80%), Positives = 111/131 (84%), Gaps = 2/131 (1%)

Query: 5   VGGSRASGGNGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAAS 64
             G+  SGGNG V N    +TTV  DD KQNLNQVINS+QKTLG+LHQL LTVS+FNAA 
Sbjct: 10  AAGTDGSGGNGSVINDTPVSTTV--DDSKQNLNQVINSIQKTLGILHQLNLTVSNFNAAY 67

Query: 65  QLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQV 124
           QLPLLQRLNSLV ELDNMVKLSEKC IQVP EVLNLIDDGKNPDEFTRDV+NSCIAKNQ 
Sbjct: 68  QLPLLQRLNSLVLELDNMVKLSEKCPIQVPMEVLNLIDDGKNPDEFTRDVLNSCIAKNQS 127

Query: 125 TKGKTDAFKVL 135
           TKGKTDAFK L
Sbjct: 128 TKGKTDAFKGL 138

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9295719|gb|AAF87025.1|AC006535_3 T24P13.4 [Arabidopsis thaliana]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 2/126 (1%)

Query: 12  GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
           G NG +  Q ND  +T   ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQL LL
Sbjct: 153 GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 212

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 213 QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 272

Query: 130 DAFKVL 135
           DAFK L
Sbjct: 273 DAFKDL 278

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18396004|ref|NP_564254.1| Mediator complex, subunit Med10 [Arabidopsis thaliana] gi|13926327|gb|AAK49628.1|AF372912_1 At1g26660/T24P13_4 [Arabidopsis thaliana] gi|16323258|gb|AAL15363.1| At1g26660/T24P13_4 [Arabidopsis thaliana] gi|332192597|gb|AEE30718.1| Mediator complex, subunit Med10 [Arabidopsis thaliana]

 Score =  194 bits (494), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 95/126 (75%), Positives = 108/126 (85%), Gaps = 2/126 (1%)

Query: 12  GGNGMVSNQAND--TTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLL 69
           G NG +  Q ND  +T   ADD K+NL+QVINS++KTLG+LHQL+LTV+SF  ASQL LL
Sbjct: 13  GSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTVTSFTPASQLHLL 72

Query: 70  QRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKT 129
           QRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NSCIA+NQVTKGKT
Sbjct: 73  QRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNSCIARNQVTKGKT 132

Query: 130 DAFKVL 135
           DAFK L
Sbjct: 133 DAFKDL 138

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TAIR|locus:505006147	189	AT1G26665 [Arabidopsis thalian	1.0	0.714	0.731	1.4e-46
TAIR|locus:2165680	186	MED10A [Arabidopsis thaliana (	0.888	0.645	0.731	2e-40
UNIPROTKB|E1BVD0	134	MED10 "Uncharacterized protein	0.674	0.679	0.369	1.7e-11
MGI|MGI:106331	135	Med10 "mediator of RNA polymer	0.674	0.674	0.369	1.7e-11
RGD|1310128	135	Med10 "mediator complex subuni	0.674	0.674	0.369	1.7e-11
UNIPROTKB|Q3ZCF2	135	MED10 "Mediator of RNA polymer	0.674	0.674	0.369	2.2e-11
UNIPROTKB|Q9BTT4	135	MED10 "Mediator of RNA polymer	0.674	0.674	0.369	2.2e-11
UNIPROTKB|F1S049	135	MED10 "Uncharacterized protein	0.674	0.674	0.369	2.2e-11
ZFIN|ZDB-GENE-070117-2423	134	med10 "mediator of RNA polymer	0.651	0.656	0.359	5.8e-11
DICTYBASE|DDB_G0290209	219	med10 "putative mediator compl	0.748	0.461	0.264	5.2e-10

TAIR|locus:505006147 AT1G26665 [Arabidopsis thaliana (taxid:3702)]

 Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
 Identities = 101/138 (73%), Positives = 114/138 (82%)

Query:     1 MDGPVGGSRASGG-NGMVSNQAND-TTTVA-ADDPKQNLNQVINSVQKTLGLLHQLYLTV 57
             MD     S   GG NG +  Q ND T+TV  ADD K+NL+QVINS++KTLG+LHQL+LTV
Sbjct:     1 MDPTQNTSAGIGGSNGTIRYQTNDGTSTVTVADDSKENLSQVINSIEKTLGVLHQLHLTV 60

Query:    58 SSFNAASQLPLLQRLNSLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVINS 117
             +SF  ASQL LLQRLNSLV ELDNM KLSEKCNIQ+P EVLNLIDDGKNPDEFT+DV+NS
Sbjct:    61 TSFTPASQLHLLQRLNSLVMELDNMTKLSEKCNIQIPMEVLNLIDDGKNPDEFTKDVLNS 120

Query:   118 CIAKNQVTKGKTDAFKVL 135
             CIA+NQVTKGKTDAFK L
Sbjct:   121 CIARNQVTKGKTDAFKDL 138

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

TAIR|locus:2165680 MED10A [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.0e-40, P = 2.0e-40
 Identities = 90/123 (73%), Positives = 99/123 (80%)

Query:    14 NGMVSNQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLN 73
             NG +  + N   TV  DD  + LNQ+INS QK L LLHQL LTVSSF  ASQL LLQRLN
Sbjct:    15 NGSIKTEINAIATV--DDSNEKLNQIINSNQKILELLHQLKLTVSSFTPASQLHLLQRLN 72

Query:    74 SLVSELDNMVKLSEKCNIQVPTEVLNLIDDGKNPDEFTRDVIN-SCIAKNQVTKGKTDAF 132
             SLV ELDNM KLS+KCNIQVP EVLNLIDDGKNPDEFT+DV+N +CIAKNQVTKGK+DAF
Sbjct:    73 SLVMELDNMAKLSDKCNIQVPIEVLNLIDDGKNPDEFTKDVLNKNCIAKNQVTKGKSDAF 132

Query:   133 KVL 135
             K L
Sbjct:   133 KGL 135

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

UNIPROTKB|E1BVD0 MED10 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFMVTGLQDIDKCRQQLHDISVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             D G+NP  +T++ +   +AKN+  KGK D  K
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

MGI|MGI:106331 Med10 "mediator of RNA polymerase II transcription, subunit 10 homolog (NUT2, S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             D G+NP  +T++ +   +AKN+  KGK D  K
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0016592 "mediator complex" evidence=IDA

GO:0019827 "stem cell maintenance" evidence=IMP

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

RGD|1310128 Med10 "mediator complex subunit 10" [Rattus norvegicus (taxid:10116)]

 Score = 157 (60.3 bits), Expect = 1.7e-11, P = 1.7e-11
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLSQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             D G+NP  +T++ +   +AKN+  KGK D  K
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

UNIPROTKB|Q3ZCF2 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Bos taurus (taxid:9913)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             D G+NP  +T++ +   +AKN+  KGK D  K
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

UNIPROTKB|Q9BTT4 MED10 "Mediator of RNA polymerase II transcription subunit 10" [Homo sapiens (taxid:9606)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             D G+NP  +T++ +   +AKN+  KGK D  K
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0005654 "nucleoplasm" evidence=TAS

GO:0006367 "transcription initiation from RNA polymerase II promoter" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

UNIPROTKB|F1S049 MED10 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 34/92 (36%), Positives = 55/92 (59%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +V+ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQAGLNQKLNFIVTGLQDIDKCRQQLHDITVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             D G+NP  +T++ +   +AKN+  KGK D  K
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKIDTMK 103

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0019827 "stem cell maintenance" evidence=IEA

GO:0016592 "mediator complex" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

ZFIN|ZDB-GENE-070117-2423 med10 "mediator of RNA polymerase II transcription, subunit 10 homolog" [Danio rerio (taxid:7955)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 32/89 (35%), Positives = 54/89 (60%)

Query:    43 VQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLI 101
             ++K +  + QL + VS F  +SQ  L Q+LN +++ L ++ K  ++ + I VP EV   I
Sbjct:    12 LEKFVENIRQLGIIVSDFQPSSQTGLNQKLNFMITGLQDIEKCRQQLHDINVPLEVFEYI 71

Query:   102 DDGKNPDEFTRDVINSCIAKNQVTKGKTD 130
             D G+NP  +T++ +   +AKN+  KGK D
Sbjct:    72 DQGRNPQLYTKECLERALAKNEQVKGKID 100

GO:0016592 "mediator complex" evidence=IEA

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0007275 "multicellular organismal development" evidence=IEA

GO:0007507 "heart development" evidence=IMP

DICTYBASE|DDB_G0290209 med10 "putative mediator complex subunit 10" [Dictyostelium discoideum (taxid:44689)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 27/102 (26%), Positives = 56/102 (54%)

Query:    33 KQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-I 91
             KQ    ++ +V++ +  L +  + V  F   SQ  L  +LN +++  + +       N +
Sbjct:    48 KQEHLPLLQTVEELVEELRRSLIVVEEFQTPSQQLLFDKLNKIINLYEKIESNRHIVNDV 107

Query:    92 QVPTEVLNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
             ++P E+  +ID  KNPD + ++ + +C++ N+ TKGK ++ K
Sbjct:   108 EIPLEIFRVIDQSKNPDLYVKETLQNCLSANEKTKGKIESIK 149

GO:0016592 "mediator complex" evidence=IEA;ISS

GO:0006366 "transcription from RNA polymerase II promoter" evidence=ISS

GO:0006357 "regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0001104 "RNA polymerase II transcription cofactor activity" evidence=IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
F4HPA7	MD10B_ARATH	No assigned EC number	0.7539	0.9185	0.6560	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
pfam09748	120	pfam09748, Med10, Transcription factor subunit Med	4e-34
cd09607	581	cd09607, M3B_PepF_2, Peptidase family M3B Oligopep	0.002

>gnl|CDD|150423 pfam09748, Med10, Transcription factor subunit Med10 of Mediator complex

 Score =  115 bits (289), Expect = 4e-34
 Identities = 37/96 (38%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 39  VINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEK-CNIQVPTEV 97
           +   +++ +  L +L + VS F   SQ  L Q+LN+LV  L ++ KL+++  ++ +P EV
Sbjct: 1   LEEQLEEIIESLRELGVIVSDFQPQSQDALNQKLNTLVRGLQSLDKLAQQLSDVNIPLEV 60

Query: 98  LNLIDDGKNPDEFTRDVINSCIAKNQVTKGKTDAFK 133
           +  IDDG+NPD +TR+ +   + KNQ  KGK  AFK
Sbjct: 61  IQYIDDGRNPDLYTREFVELVLRKNQYVKGKMHAFK 96

Med10 is one of the protein subunits of the Mediator complex, tethered to Rgr1 protein. The Mediator complex is required for the transcription of most RNA polymerase II (Pol II)-transcribed genes. Med10 specifically mediates basal-level HIS4 transcription via Gcn4, and, additionally, there is a putative requirement for Med10 in Bas2-mediated transcription. Med10 is part of the middle region of Mediator. Length = 120

>gnl|CDD|189014 cd09607, M3B_PepF_2, Peptidase family M3B Oligopeptidase F (PepF)

 Score = 36.4 bits (85), Expect = 0.002
 Identities = 23/92 (25%), Positives = 42/92 (45%), Gaps = 8/92 (8%)

Query: 19  NQANDTTTVAADDPKQNLNQVINSVQKTLGLLHQL----YLTVS--SFNAASQLPLLQRL 72
               D    + +D  + L  +I  +Q+ L LL  L       +S  + +  +Q  LL +L
Sbjct: 30  KSLLDALLPSDEDAVETLEALITLLQELLELLRTLGAFVSCLLSADTTDEEAQ-ALLSQL 88

Query: 73  NSLVSELDNMVKLSEKCNIQVPTEVLN-LIDD 103
           N L + L+ ++ L +K    +  E L+ L+ D
Sbjct: 89  NQLSASLEQLLTLLDKKLAALSEEDLDALLAD 120

Peptidase family M3B Oligopeptidase F (PepF; Pz-peptidase B; EC 3.4.24.-) is mostly bacterial and includes oligoendopeptidase F from Lactococcus lactis. This enzyme hydrolyzes peptides containing between 7 and 17 amino acids with fairly broad specificity. The PepF gene is duplicated in L. lactis on the plasmid that bears it, while a shortened second copy is found in Bacillus subtilis. Most bacterial PepFs are cytoplasmic endopeptidases; however, the PepF Bacillus amyloliquefaciens oligopeptidase is a secreted protein and may facilitate the process of sporulation. Specifically, the yjbG gene encoding the homolog of the PepF1 and PepF2 oligoendopeptidases of Lactococcus lactis has been identified in Bacillus subtilis as an inhibitor of sporulation initiation when over expressed from a multicopy plasmid. Length = 581

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
KOG3046	147	consensus Transcription factor, subunit of SRB sub	100.0
PF09748	128	Med10: Transcription factor subunit Med10 of Media	100.0

>KOG3046 consensus Transcription factor, subunit of SRB subcomplex of RNA polymerase II [Transcription]

Probab=100.00  E-value=1.3e-39  Score=247.71  Aligned_cols=110  Identities=49%  Similarity=0.702  Sum_probs=106.3

Q ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHhhhhhcC-CCCcHHHHHhhhcC
Q 032724           26 TVAADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVKLSEKCN-IQVPTEVLNLIDDG  104 (135)
Q Consensus        26 ~~~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~~a~~~~-i~IP~EVl~yID~G  104 (135)
                      ++..++..+.|.++.++|+++++.+||++++|++|+|.||+.|.++|++||..|++|++++++++ ++||+||++|||||
T Consensus         4 ~~~~~q~~ekl~~l~~~le~~~e~~~~Lgl~vs~F~~tsq~~L~qrl~tLv~~L~~l~~~s~k~n~i~IPleVl~yIddG   83 (147)
T KOG3046|consen    4 STNNDQMQEKLAQLENSLEKFLENFRQLGLIVSNFQPTSQDALNQRLNTLVRGLQDLDKLSSKLNDIQIPLEVLEYIDDG   83 (147)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCCcHHHHHHHHHHHHHHhhhhHHHHHhhccccCcHHHHHHHhcC
Confidence            45678899999999999999999999999999999999999999999999999999999999886 99999999999999


Q ss_pred             CCchHHHHHHHHHHHHhhhhhhhhHHHhhcC
Q 032724          105 KNPDEFTRDVINSCIAKNQVTKGKTDAFKVL  135 (135)
Q Consensus       105 rNPDiyTre~vE~~~~~Nq~~kGK~~a~~~l  135 (135)
                      ||||+|||+|+|+|+++||++|||++|||+|
T Consensus        84 rNPd~ytke~le~~~~kNq~vkGK~~~~K~f  114 (147)
T KOG3046|consen   84 RNPDLYTKEFLEKCLAKNQYVKGKIDAFKKF  114 (147)
T ss_pred             CCccHHHHHHHHHHHHhhhHHhhhHHHHHHH
Confidence            9999999999999999999999999999986

>PF09748 Med10: Transcription factor subunit Med10 of Mediator complex; InterPro: IPR019145 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes

Probab=100.00  E-value=3.6e-37  Score=230.11  Aligned_cols=94  Identities=40%  Similarity=0.632  Sum_probs=88.2

Q ss_pred             HHHHHHHHHHHhhhhccccC-CCchhHHHHHHHHHHHHHHHHHhhhhh--------cCCCCcHHHHHhhhcCCCchHHHH
Q 032724           42 SVQKTLGLLHQLYLTVSSFN-AASQLPLLQRLNSLVSELDNMVKLSEK--------CNIQVPTEVLNLIDDGKNPDEFTR  112 (135)
Q Consensus        42 sl~~~l~~L~ql~i~Vs~f~-~~sq~~L~~kin~LV~~L~~L~~~a~~--------~~i~IP~EVl~yID~GrNPDiyTr  112 (135)
                      +|++++++|+|++++|++|+ |+|++.|.+||+.|+++|++|++++..        ++++||+|||+|||+|||||+|||
T Consensus         4 ~l~~~i~~l~el~~~v~d~~~~~s~~~L~~ki~~lv~~L~~l~~~~~~~~~~~~~~~~~~IP~evl~yID~GrNPDiyTr   83 (128)
T PF09748_consen    4 QLEDVIQSLYELGVIVSDFQGPPSQEALNQKINQLVTSLQELDKLAQQTNDPDSPLQDIQIPLEVLEYIDDGRNPDIYTR   83 (128)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccccCCCCHHHHHHHhCCCCchHHHH
Confidence            34445557999999999999 999999999999999999999999987        789999999999999999999999


Q ss_pred             HHHHHHHHhhhhhhhhHHHhhcC
Q 032724          113 DVINSCIAKNQVTKGKTDAFKVL  135 (135)
Q Consensus       113 e~vE~~~~~Nq~~kGK~~a~~~l  135 (135)
                      ||||+|+++||++|||++||++|
T Consensus        84 e~vE~~~~~Nq~~kGK~~a~~~f  106 (128)
T PF09748_consen   84 EFVELVRRENQYVKGKMEAFKSF  106 (128)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHH
Confidence            99999999999999999999986

Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. Med10 is one of the protein subunits of the Mediator complex, tethered to Med14 (Rgr1) protein. Med10 specifically mediates basal-level HIS4 transcription via Gcn4. In addition, there is a putative requirement for Med10 in Bas2-mediated transcription []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
1vcs_A	102	Vesicle transport through interaction with T- snar	90.99
2qyw_A	102	Vesicle transport through interaction with T-SNAR	86.38

>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1

Probab=90.99  E-value=1.5  Score=30.34  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=51.0

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHh
Q 032724           28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK   84 (135)
Q Consensus        28 ~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~   84 (135)
                      ..+..+..|.++=..|++.-+.|.||.+-|.+..++.+..+..||..+=+.|.+|.+
T Consensus        32 ~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p~~~R~~~~~klr~Yk~dL~~lk~   88 (102)
T 1vcs_A           32 PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET   88 (102)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHhHHHHHHHHHHHHHHHHHHHH
Confidence            457778888888889999889999999999999888899999999999999998865

>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V

Probab=86.38  E-value=1.3  Score=30.76  Aligned_cols=56  Identities=11%  Similarity=0.175  Sum_probs=47.7

Q ss_pred             cCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHh
Q 032724           29 ADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK   84 (135)
Q Consensus        29 ~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~   84 (135)
                      .+..+..|.++=..|++.-+.|.||.+-|.+..++.+..+..||..+=+.|.+|.+
T Consensus        44 ~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~~p~s~R~~~~~klr~Yk~dL~~lk~   99 (102)
T 2qyw_A           44 TEEKKKLVRDFDEKQQEANETLAEMEEELRYAPLTFRNPMMSKLRNYRKDLAKLHR   99 (102)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            36667778887788888888999999999999888888999999999999988764

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1vcsa1	89	Vesicle transport v-SNARE protein Vti1-like 2 {Mou	91.82

>d1vcsa1 a.47.2.1 (A:8-96) Vesicle transport v-SNARE protein Vti1-like 2 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: STAT-like
superfamily: t-snare proteins
family: t-snare proteins
domain: Vesicle transport v-SNARE protein Vti1-like 2
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.82  E-value=0.56  Score=30.45  Aligned_cols=57  Identities=23%  Similarity=0.283  Sum_probs=52.0

Q ss_pred             ccCChHHHHHHHHHHHHHHHHHHHHhhhhccccCCCchhHHHHHHHHHHHHHHHHHh
Q 032724           28 AADDPKQNLNQVINSVQKTLGLLHQLYLTVSSFNAASQLPLLQRLNSLVSELDNMVK   84 (135)
Q Consensus        28 ~~~~~~~~L~~~iesl~~~l~~L~ql~i~Vs~f~~~sq~~L~~kin~LV~~L~~L~~   84 (135)
                      ..+..+..|.++=.+|++.-+.|.||.+-|.+..++.+..+..||..+=+.|.+|.+
T Consensus        25 ~geerk~~l~~ie~~leEA~ell~qMelEvr~~p~s~R~~~~~klr~Yk~dl~~lk~   81 (89)
T d1vcsa1          25 PPDEKKQMVANVEKQLEEARELLEQMDLEVREIPPQSRGMYSNRMRSYKQEMGKLET   81 (89)
T ss_dssp             CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            557888889999999999999999999999999999999999999999999998875