Citrus Sinensis ID: 032740

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-----
Protein Sequence
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Secondary Structure (PSIPRED)
cEEEEEEcccccEEEEcEEEEEEccccEEEEEcccccccEEcccHHHcccccccccccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEcccEEEccccEEcccEEEEEcccccEEEccc
Secondary Structure Prediction (SSPRO)
ccEEEEccccccEEEccccEEEEccccEEEEEccccccHccccHHHHHHHHHHHHHccEEEEEEEccEEEEEEcccEEEEEEEEccccccccccccccccEEEEccEEEEEEEEEEcccEEEEEcccccEEEccc
Coil and Loop (DISEMBL)
MFINAIYFAAgvfvedksftclytendtafviesetfeqlevpldvfGKAGAYLQEGMKVWLQLYDgralsgsipkRVACTIKEihastkgptvtprYRRAlldngvtvmvpsyleigeeifinpqddsyigrak
Flexible Loop (DISEMBL)
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIkeihastkgptvtpryrRALLDNGVTVMVPSYLeigeeifinpqddsyigrak
Low Complexity Region (SEG)
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Disordered region (IsUnstruct)
*FINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINP**********
Disordered Region (DISOPRED)
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA*
Disordered Region (DISEMBL)
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Disordered Region (DISPRO)
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPT*TPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MFINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	135	2.2.26 [Sep-21-2011]
Q2G6X5	187	Elongation factor P OS=No	yes	no	0.911	0.657	0.422	1e-23
B0UJ99	188	Elongation factor P OS=Me	yes	no	0.911	0.654	0.422	2e-22
B8IS61	188	Elongation factor P OS=Me	yes	no	0.911	0.654	0.414	1e-21
A9IYN9	191	Elongation factor P OS=Ba	yes	no	0.911	0.643	0.398	2e-21
Q6FYN9	190	Elongation factor P OS=Ba	yes	no	0.911	0.647	0.382	3e-21
B7KT38	188	Elongation factor P OS=Me	yes	no	0.911	0.654	0.414	5e-21
Q6G1Z7	191	Elongation factor P OS=Ba	yes	no	0.911	0.643	0.382	7e-21
A5VAL5	187	Elongation factor P OS=Sp	yes	no	0.911	0.657	0.382	1e-20
B1ZHM8	188	Elongation factor P OS=Me	yes	no	0.911	0.654	0.414	1e-20
Q1GTJ4	187	Elongation factor P OS=Sp	yes	no	0.911	0.657	0.398	1e-20

>sp|Q2G6X5|EFP_NOVAD Elongation factor P OS=Novosphingobium aromaticivorans (strain DSM 12444) GN=efp PE=3 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 79/123 (64%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           V ++ K F  LY E D    ++ ET++Q+ +P D+ G A A+LQ+GM V L++YD R +S
Sbjct: 64  VRLDTKDFQFLYAEGDDLVFMDVETYDQITLPSDLLGDAAAFLQDGMTVLLEMYDERPIS 123

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
             +P++V  TI E  A  KG T +  Y+ A+LDNGV VMVP ++E G  I ++  + SY+
Sbjct: 124 VQLPEQVEATIVEADAVVKGQTASSSYKPAILDNGVRVMVPPHIESGTRIVVDVYERSYV 183

Query: 132 GRA 134
           G+A
Sbjct: 184 GKA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.
Novosphingobium aromaticivorans (strain DSM 12444) (taxid: 279238)

>sp|B0UJ99|EFP_METS4 Elongation factor P OS=Methylobacterium sp. (strain 4-46) GN=efp PE=3 SV=1

 Score =  104 bits (259), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/123 (42%), Positives = 73/123 (59%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72
           FVED+  T LY + + +  +  E++EQ+ VP DV G   AYLQEGM V L L++G  L+ 
Sbjct: 65  FVEDREHTFLYKDGEGSHFMNPESYEQVAVPDDVIGDQAAYLQEGMAVMLSLHNGVPLAI 124

Query: 73  SIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG 132
            +P+RV   I E    TKG T +  Y+ A+L NGV  +VP ++  G  + I   D SY+ 
Sbjct: 125 ELPQRVTLEIVETEPVTKGQTASSSYKPAVLSNGVRTLVPPHITTGTRVVIMTADGSYVE 184

Query: 133 RAK 135
           RAK
Sbjct: 185 RAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium sp. (strain 4-46) (taxid: 426117)

>sp|B8IS61|EFP_METNO Elongation factor P OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=efp PE=3 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 71/123 (57%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72
           FVED+  T LY++ +    +  E++EQ+ VP DV G   AYLQEGM V L L++G  L+ 
Sbjct: 65  FVEDREHTFLYSDGEGFHFMNPESYEQVAVPEDVIGDQAAYLQEGMAVMLSLHNGVPLAI 124

Query: 73  SIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG 132
            +P+RV   + E    TKG T +  Y+ A L NGV   VP ++  G  + I   D SY+ 
Sbjct: 125 ELPQRVTLEVTETEPVTKGQTASSSYKPATLSNGVRTQVPPHITAGTRVVIMTADGSYVE 184

Query: 133 RAK 135
           RAK
Sbjct: 185 RAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium nodulans (strain ORS2060 / LMG 21967) (taxid: 460265)

>sp|A9IYN9|EFP_BART1 Elongation factor P OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=efp PE=3 SV=1

 Score =  100 bits (250), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 78/123 (63%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           V +E K FT LY + D    ++SE++EQLE+  D  G+  A+LQ+GM V ++LY  + + 
Sbjct: 64  VRLEQKDFTFLYQQGDALVFMDSESYEQLELQKDFVGERAAFLQDGMTVTVELYQEKPIG 123

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            S+P +VA TI E   + KG TVT  Y+ A+L+NG+ ++VP ++  GE I ++  +  Y+
Sbjct: 124 ISLPDQVAVTIVEADPALKGQTVTSSYKPAILENGIRILVPPFMNAGERIIVDTNELIYL 183

Query: 132 GRA 134
            RA
Sbjct: 184 RRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Bartonella tribocorum (strain CIP 105476 / IBS 506) (taxid: 382640)

>sp|Q6FYN9|EFP_BARQU Elongation factor P OS=Bartonella quintana (strain Toulouse) GN=efp PE=3 SV=1

 Score =  100 bits (249), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 78/123 (63%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           V +E K FT LY + D    ++S+++EQLE+  D  G+  A+LQEGM V ++LY  + + 
Sbjct: 64  VRLEQKDFTFLYQQGDALIFMDSQSYEQLELQKDFVGERAAFLQEGMTVTVELYQEKPIG 123

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            S+P +V+ TI E   + KG TVT  Y+ A+L+NG+ ++VP ++  GE + ++  +  Y+
Sbjct: 124 ISLPDQVSVTIAEADPALKGQTVTASYKPAILENGIRILVPPFINAGEHVIVDTNELVYL 183

Query: 132 GRA 134
            RA
Sbjct: 184 RRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Bartonella quintana (strain Toulouse) (taxid: 283165)

>sp|B7KT38|EFP_METC4 Elongation factor P OS=Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) GN=efp PE=3 SV=1

 Score = 99.4 bits (246), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 70/123 (56%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72
           FVED+  T LY + +    +  E++EQ+ VP DV G A  YLQEGM V L  ++G  L+ 
Sbjct: 65  FVEDRDHTFLYQDGEGYHFMNPESYEQIAVPADVVGDAAPYLQEGMTVTLSTHNGVPLTI 124

Query: 73  SIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG 132
            +P+R+   I E    TKG T +  Y+ ALL NGV   VP ++  G  + I   D SY+ 
Sbjct: 125 ELPQRMTFEIVETEPVTKGQTASSSYKPALLSNGVKTSVPPHVSTGTRVVIMTADGSYVE 184

Query: 133 RAK 135
           RAK
Sbjct: 185 RAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium chloromethanicum (strain CM4 / NCIMB 13688) (taxid: 440085)

>sp|Q6G1Z7|EFP_BARHE Elongation factor P OS=Bartonella henselae (strain ATCC 49882 / Houston 1) GN=efp PE=3 SV=1

 Score = 99.0 bits (245), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 78/123 (63%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           V +E K FT LY + D    ++S+++EQLE+  D  G+  A+LQ+GM V ++LY  + + 
Sbjct: 64  VRLEQKDFTFLYQQGDALIFMDSQSYEQLELQKDFVGERAAFLQDGMTVTVELYQEKPIG 123

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            S+P +V+ TI E   + KG TVT  Y+ A+L+NG+ ++VP ++  GE I ++  +  Y+
Sbjct: 124 ISLPDQVSVTIVEADPALKGQTVTASYKPAILENGIRILVPPFINAGERIIVDTNELIYV 183

Query: 132 GRA 134
            RA
Sbjct: 184 RRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Bartonella henselae (strain ATCC 49882 / Houston 1) (taxid: 283166)

>sp|A5VAL5|EFP_SPHWW Elongation factor P OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=efp PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 47/123 (38%), Positives = 76/123 (61%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           V ++ K F  L+ E +    ++ +T+EQ+ +P D+ G A A+LQ+GM V ++LY+ R +S
Sbjct: 64  VRLDTKDFQFLFAEGEDLTFMDKDTYEQITLPRDLLGDAAAFLQDGMDVVMELYEERPIS 123

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
             +P +V  TI E  A  KG T +  Y+ A+LDNGV VMVP ++  G  I ++  + +Y+
Sbjct: 124 VQLPDQVEATIVEADAVVKGQTASSSYKPAMLDNGVRVMVPPHISSGTRIVVDVYEQTYV 183

Query: 132 GRA 134
            RA
Sbjct: 184 RRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) (taxid: 392499)

>sp|B1ZHM8|EFP_METPB Elongation factor P OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=efp PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 51/123 (41%), Positives = 69/123 (56%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72
           FVED+  T LY + +    +  E +EQL VP DV G A  YLQEGM V L  ++G  L+ 
Sbjct: 65  FVEDRDHTFLYQDGEGYHFMNPENYEQLAVPEDVVGDAAPYLQEGMVVTLSTHNGVPLAI 124

Query: 73  SIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG 132
            +P+RV   I E    TKG T +  Y+ A+L NGV   VP ++  G  + I   D +Y+ 
Sbjct: 125 ELPQRVTLEIVETEPVTKGQTASSSYKPAILSNGVKTSVPPHITTGTRVVIMTADGAYVE 184

Query: 133 RAK 135
           RAK
Sbjct: 185 RAK 187

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) (taxid: 441620)

>sp|Q1GTJ4|EFP_SPHAL Elongation factor P OS=Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) GN=efp PE=3 SV=1

 Score = 98.2 bits (243), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/123 (39%), Positives = 75/123 (60%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           V ++ K F  LY E D    ++ +T+EQ+ +  DV G+A  +LQ+GM V L+L++ R +S
Sbjct: 64  VRLDTKDFQYLYAEGDDLVFMDKDTYEQITIGKDVVGEAHEFLQDGMDVVLELWEERPIS 123

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
             +P+++  TI E  A  KG T +  Y+ A+LDNGV VMVP ++  G  I +N  D  Y+
Sbjct: 124 VELPEQIEATIVEADAVVKGQTASSSYKPAILDNGVRVMVPPHITSGTRIVVNVYDREYV 183

Query: 132 GRA 134
            RA
Sbjct: 184 RRA 186

Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase.

Sphingopyxis alaskensis (strain DSM 13593 / LMG 18877 / RB2256) (taxid: 317655)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
297799372	257	elongation factor P (EF-P) family protei	0.903	0.474	0.688	2e-43
18416726	258	elongation factor P (EF-P) family protei	0.903	0.472	0.672	2e-42
226509854	246	elongation factor P [Zea mays] gi|195624	0.911	0.5	0.577	5e-35
195643194	246	elongation factor P [Zea mays]	0.911	0.5	0.577	6e-35
242032603	246	hypothetical protein SORBIDRAFT_01g00443	0.911	0.5	0.569	9e-35
224052898	190	predicted protein [Populus trichocarpa]	0.874	0.621	0.557	1e-34
357114989	248	PREDICTED: elongation factor P-like [Bra	0.903	0.491	0.573	3e-34
30103012	247	putative translation elongation factor P	0.911	0.497	0.552	2e-33
108711647	262	Elongation factor P family protein, expr	0.911	0.469	0.552	2e-33
334186934	261	elongation factor P (EF-P) family protei	0.755	0.390	0.666	1e-32

>gi|297799372|ref|XP_002867570.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata] gi|297313406|gb|EFH43829.1| elongation factor P (EF-P) family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 84/122 (68%), Positives = 97/122 (79%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFTCLYTE DTAF+IE  TFEQ+EVPLD+FGKA  YL+E MKV LQLYDGRALS
Sbjct: 133 VFVEEKSFTCLYTEGDTAFLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALS 192

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            SIPK + CT+ E     KG T  PRY+RALLDNG T+ VPSYLE GE+I IN +DDS++
Sbjct: 193 ASIPKHITCTVVETQDPMKGLTSAPRYKRALLDNGSTIQVPSYLEAGEKIVINTEDDSFV 252

Query: 132 GR 133
            R
Sbjct: 253 KR 254

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416726|ref|NP_567743.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|15450784|gb|AAK96663.1| putative protein [Arabidopsis thaliana] gi|20259884|gb|AAM13289.1| putative protein [Arabidopsis thaliana] gi|332659783|gb|AEE85183.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana]

 Score =  176 bits (447), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 82/122 (67%), Positives = 96/122 (78%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFTCLY E DTA++IE  TFEQ+EVPLD+FGKA  YL+E MKV LQLYDGRALS
Sbjct: 134 VFVEEKSFTCLYAEGDTAYLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALS 193

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            SIPK + CT+ E     KG T  PRY+RALLDNG T+ VPSYLE GE+I IN +DDS++
Sbjct: 194 ASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTIQVPSYLEAGEKIVINTEDDSFV 253

Query: 132 GR 133
            R
Sbjct: 254 KR 255

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226509854|ref|NP_001149082.1| elongation factor P [Zea mays] gi|195624552|gb|ACG34106.1| elongation factor P [Zea mays]

 Score =  152 bits (383), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 93/123 (75%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFT LY E DT  ++E ETFEQLEV  ++FGKA AYL++ MKV LQ +DGR +S
Sbjct: 124 VFVEEKSFTYLYQEGDTVTLMEPETFEQLEVSKELFGKAAAYLKDEMKVNLQYFDGRPMS 183

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
           G++P+RV CT+ E   +TKG T  P+Y+R LLDNG+TV+ P ++E GE I I+  DDSY+
Sbjct: 184 GTVPQRVTCTVVEAQPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGENIVISTADDSYM 243

Query: 132 GRA 134
            RA
Sbjct: 244 TRA 246

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|195643194|gb|ACG41065.1| elongation factor P [Zea mays]

 Score =  152 bits (383), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 93/123 (75%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFT LY E DT  ++E ETFEQLEV  ++FGKA AYL++ MKV LQ +DGR +S
Sbjct: 124 VFVEEKSFTYLYQEGDTVTLMEPETFEQLEVSKELFGKAAAYLKDEMKVNLQYFDGRPMS 183

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
           G++P+RV CT+ E   +TKG T  P+Y+R LLDNG+TV+ P ++E GE I I+  DDSY+
Sbjct: 184 GTVPQRVTCTVVEAQPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGENIVISTADDSYM 243

Query: 132 GRA 134
            RA
Sbjct: 244 TRA 246

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242032603|ref|XP_002463696.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor] gi|241917550|gb|EER90694.1| hypothetical protein SORBIDRAFT_01g004430 [Sorghum bicolor]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 70/123 (56%), Positives = 94/123 (76%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFT LY E DT  ++E ETFEQLEV  ++FGKA AYL++ MKV LQ +DGR +S
Sbjct: 124 VFVEEKSFTYLYQEGDTVTLMEPETFEQLEVSKELFGKAAAYLKDEMKVNLQYFDGRPMS 183

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
           G++P+RV CT+ E   +TKG T  P+Y+R LLDNG++V+ P ++E GE+I I+  DDSY+
Sbjct: 184 GTVPQRVTCTVVEAQPNTKGLTAQPQYKRVLLDNGLSVLAPPFIEAGEKIVISTADDSYM 243

Query: 132 GRA 134
            RA
Sbjct: 244 TRA 246

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052898|ref|XP_002297630.1| predicted protein [Populus trichocarpa] gi|222844888|gb|EEE82435.1| predicted protein [Populus trichocarpa]

 Score =  150 bits (380), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 68/122 (55%), Positives = 96/122 (78%), Gaps = 4/122 (3%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE++SFTCLYTE+++ ++++ E FEQLEVPL +FG+A AYL+E MKV +QL+DGR LS
Sbjct: 73  VFVEERSFTCLYTEHESVYLMDLEKFEQLEVPLILFGQAAAYLKEEMKVKMQLFDGRPLS 132

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
           GSIPK+V C IKE    T+    TPRY++A+LDNG+ + VP+Y+E GE + +N +D S++
Sbjct: 133 GSIPKQVTCVIKE----TQDHAATPRYKKAVLDNGLIIQVPTYIETGEAVVVNTEDGSFV 188

Query: 132 GR 133
            R
Sbjct: 189 TR 190

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357114989|ref|XP_003559276.1| PREDICTED: elongation factor P-like [Brachypodium distachyon]

 Score =  149 bits (377), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 70/122 (57%), Positives = 89/122 (72%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFT LY E D   ++E  TFEQ+EV  D+FGKA AYL++ M+V LQ YDGRA+S
Sbjct: 127 VFVEEKSFTYLYQEGDNVALMEPNTFEQIEVSKDLFGKAAAYLKDEMRVTLQYYDGRAVS 186

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
           GS+P RV CT+ E   +TKG T  P+Y+R LLDNG+TV+ P ++E GE I I   DDSY+
Sbjct: 187 GSVPPRVTCTVVEAQPNTKGLTAQPQYKRVLLDNGLTVLAPPFIEAGESIVITTVDDSYV 246

Query: 132 GR 133
            R
Sbjct: 247 TR 248

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30103012|gb|AAP21425.1| putative translation elongation factor P [Oryza sativa Japonica Group]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 90/123 (73%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFT LY E D   ++E ETFEQLEV  ++FGK  AYL++ MKV LQ +DGR +S
Sbjct: 125 VFVEEKSFTYLYQEGDNVTLMEPETFEQLEVSKELFGKTAAYLKDEMKVTLQYFDGRPMS 184

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            S+P RV CT+ E    +KG T  P+Y+R LLDNG+TV+VP ++E GE+I ++  DDSY+
Sbjct: 185 ASVPPRVTCTVVEAQPHSKGITAQPQYKRVLLDNGLTVLVPPFVEAGEKIVVSTADDSYM 244

Query: 132 GRA 134
            RA
Sbjct: 245 TRA 247

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108711647|gb|ABF99442.1| Elongation factor P family protein, expressed [Oryza sativa Japonica Group] gi|125546120|gb|EAY92259.1| hypothetical protein OsI_13980 [Oryza sativa Indica Group] gi|125588319|gb|EAZ28983.1| hypothetical protein OsJ_13028 [Oryza sativa Japonica Group]

 Score =  146 bits (369), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 68/123 (55%), Positives = 90/123 (73%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFT LY E D   ++E ETFEQLEV  ++FGK  AYL++ MKV LQ +DGR +S
Sbjct: 140 VFVEEKSFTYLYQEGDNVTLMEPETFEQLEVSKELFGKTAAYLKDEMKVTLQYFDGRPMS 199

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            S+P RV CT+ E    +KG T  P+Y+R LLDNG+TV+VP ++E GE+I ++  DDSY+
Sbjct: 200 ASVPPRVTCTVVEAQPHSKGITAQPQYKRVLLDNGLTVLVPPFVEAGEKIVVSTADDSYM 259

Query: 132 GRA 134
            RA
Sbjct: 260 TRA 262

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334186934|ref|NP_001190845.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana] gi|332659784|gb|AEE85184.1| elongation factor P (EF-P) family protein [Arabidopsis thaliana]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 68/102 (66%), Positives = 78/102 (76%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           VFVE+KSFTCLY E DTA++IE  TFEQ+EVPLD+FGKA  YL+E MKV LQLYDGRALS
Sbjct: 134 VFVEEKSFTCLYAEGDTAYLIEPNTFEQVEVPLDIFGKAAVYLKEEMKVQLQLYDGRALS 193

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPS 113
            SIPK + CT+ E     KG T  PRY+RALLDNG T+   S
Sbjct: 194 ASIPKHITCTVVETQLPMKGLTSAPRYKRALLDNGSTIQSGS 235

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	135
TIGR_CMR|SPO_1244	187	SPO_1244 "translation elongati	0.911	0.657	0.357	1.7e-18
TIGR_CMR|APH_0547	188	APH_0547 "translation elongati	0.903	0.648	0.327	4.6e-18
TIGR_CMR|ECH_0777	189	ECH_0777 "translation elongati	0.903	0.645	0.308	2.6e-15
TIGR_CMR|NSE_0196	191	NSE_0196 "translation elongati	0.911	0.643	0.306	1.4e-14
TIGR_CMR|GSU_0465	187	GSU_0465 "translation elongati	0.940	0.679	0.340	3e-14
TIGR_CMR|BA_4421	185	BA_4421 "translation elongatio	0.896	0.654	0.272	2.2e-11
TIGR_CMR|DET_0870	188	DET_0870 "translation elongati	0.829	0.595	0.312	4.5e-11
TIGR_CMR|CJE_0655	189	CJE_0655 "translation elongati	0.896	0.640	0.289	5.8e-11
UNIPROTKB|P0A6N4	188	efp "protein chain elongation	0.940	0.675	0.291	9.4e-11
TIGR_CMR|CHY_1872	185	CHY_1872 "translation elongati	0.888	0.648	0.25	9.4e-11

TIGR_CMR|SPO_1244 SPO_1244 "translation elongation factor P" [Ruegeria pomeroyi DSS-3 (taxid:246200)]

 Score = 223 (83.6 bits), Expect = 1.7e-18, P = 1.7e-18
 Identities = 44/123 (35%), Positives = 72/123 (58%)

Query:    12 VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             V +E K    LY  +     +++ET+EQ+E+P D+ G+   +LQ+GM + ++ Y+  AL+
Sbjct:    65 VRLEQKDQQFLYESDGMLVFMDAETYEQIELPADLLGERRPFLQDGMTILVEFYESEALN 124

Query:    72 GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
              ++P++V C I E     KG T    ++ A+LDNGV VMVP ++   E I +N +   Y 
Sbjct:   125 ATLPQKVTCKIVETEPVVKGQTAANSFKPAVLDNGVKVMVPPFVGQDEMIVVNTETMEYS 184

Query:   132 GRA 134
              RA
Sbjct:   185 ERA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|APH_0547 APH_0547 "translation elongation factor P" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
 Identities = 40/122 (32%), Positives = 73/122 (59%)

Query:    14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGS 73
             +E+ SF  ++ ++ +  ++ +E +EQ+ +P+++ G    YLQE M + L  + G+ +S  
Sbjct:    66 IEEVSFQYIFGDSSSLTLMNTENYEQISIPVELLGDKSVYLQENMILTLLFHKGQVISAK 125

Query:    74 IPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
             +P  V   + E  +  KG T +  Y+ A+L+NG  V VP ++++GE+I I   DD+Y  R
Sbjct:   126 VPDYVVLEVVEAESVIKGQTASSSYKSAVLENGRRVSVPPFIKVGEKIVIYTPDDTYYER 185

Query:   134 AK 135
             AK
Sbjct:   186 AK 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|ECH_0777 ECH_0777 "translation elongation factor P" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 38/123 (30%), Positives = 67/123 (54%)

Query:    14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGS 73
             V++  +  +Y +     ++  +T+EQL +  D+ G    YLQ+ + + L  Y+G  +S  
Sbjct:    66 VDESDYQYIYGDGSMITIMHLKTYEQLTISKDILGDKSIYLQDNIIITLVFYNGEIISAK 125

Query:    74 IPKRVACTIKEIHASTKGPTVTPR-YRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIG 132
             +P  V   + E  A  KG TV+   Y+ A+L+N   + VP++++ G+ I +   DDSY  
Sbjct:   126 VPDYVTLQVVETEAVIKGQTVSSSAYKVAMLENNQRISVPTFIKPGDRIVVYTPDDSYYE 185

Query:   133 RAK 135
             RAK
Sbjct:   186 RAK 188

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|NSE_0196 NSE_0196 "translation elongation factor P" [Neorickettsia sennetsu str. Miyayama (taxid:222891)]

 Score = 186 (70.5 bits), Expect = 1.4e-14, P = 1.4e-14
 Identities = 38/124 (30%), Positives = 69/124 (55%)

Query:    13 FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72
             F+E+     L+ E D   ++   T+EQ  V  D+F     YL+E + V L  +  + +  
Sbjct:    67 FLEEDECHYLFKEGDAIVLMSLSTYEQFSVDADLFVDVDKYLKEEVVVKLLRHGDKIVGV 126

Query:    73 SIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVT-VMVPSYLEIGEEIFINPQDDSYI 131
              +   +A T++E     KG TVT  Y+ A+L+ G+  VMVP ++++G++I +  +D +Y+
Sbjct:   127 KVQDNLAYTVEETEPYIKGQTVTSSYKPAILNGGLLKVMVPPFIKVGDQIVVKTEDGTYV 186

Query:   132 GRAK 135
             GR +
Sbjct:   187 GRTE 190

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|GSU_0465 GSU_0465 "translation elongation factor P" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 45/132 (34%), Positives = 70/132 (53%)

Query:     8 FAAGVFVEDKSFT-----CLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWL 62
             F +G  VE+  F       LY + D    ++ ET+EQ E+  + F     YL +G +V L
Sbjct:    56 FRSGDKVEEADFERHKGQYLYADGDRGVFMDMETYEQFEMDAESFQVIQPYLLDGTEVVL 115

Query:    63 QLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIF 122
              L+  R +S   P+ V  TI +     K  T T + + A L+ G+T+ VP YLE+GE+I 
Sbjct:   116 GLFQERLVSVDPPQVVELTITDTPPVIKNATATAQTKEATLETGLTLQVPPYLEVGEKIK 175

Query:   123 INPQDDSYIGRA 134
             ++ +D  +I RA
Sbjct:   176 VDTRDCRFISRA 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|BA_4421 BA_4421 "translation elongation factor P" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 156 (60.0 bits), Expect = 2.2e-11, P = 2.2e-11
 Identities = 33/121 (27%), Positives = 59/121 (48%)

Query:    14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGS 73
             +E++    LY   +    +++ T+EQ+E+      +   +L+E M+V +  Y G  L   
Sbjct:    65 IENRRMQYLYASGEAHVFMDNGTYEQIELGEKQIERELKFLKENMEVSIMTYQGEVLGVE 124

Query:    74 IPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
             +P  V   + E     KG T +   + A L+ G+ V VP ++  GE + IN  +  Y+ R
Sbjct:   125 LPNTVELQVTETEPGIKGDTASNVTKPATLETGLVVQVPIFINEGEMLIINTGEGKYVSR 184

Query:   134 A 134
             A
Sbjct:   185 A 185

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|DET_0870 DET_0870 "translation elongation factor P" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 153 (58.9 bits), Expect = 4.5e-11, P = 4.5e-11
 Identities = 35/112 (31%), Positives = 61/112 (54%)

Query:    22 LYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACT 81
             LY EN     + ++TFEQ  +  D  G  G +L++GM + +QL     +  ++P  V   
Sbjct:    72 LYHENGNYIFMNTDTFEQHYMTEDRMGSRGVFLKDGMVIPVQLLGDAPIEITLPNFVELE 131

Query:    82 IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
             I E   ST   TVT + + A L NG+ + VP++++ G+ I ++ +  +Y+ R
Sbjct:   132 IVETSMSTGKETVTAQNKPAKLSNGMEIGVPTFIKAGDIIKVDTRTGAYVER 183

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

TIGR_CMR|CJE_0655 CJE_0655 "translation elongation factor P" [Campylobacter jejuni RM1221 (taxid:195099)]

 Score = 152 (58.6 bits), Expect = 5.8e-11, P = 5.8e-11
 Identities = 35/121 (28%), Positives = 65/121 (53%)

Query:    14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGS 73
             +EDK+   LY + +    ++++T+EQ+ +  D  G+A  ++ +GM V +  ++G+A+   
Sbjct:    67 LEDKTMQYLYDDGENCQFMDTQTYEQVAISDDDVGEAKKWMLDGMMVDVLFHNGKAIGVE 126

Query:    74 IPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
             +P+ V   I E   + KG T     + A L+ G  V +P ++  GE I ++     YI R
Sbjct:   127 VPQVVELKIIETAPNFKGDTQGSNKKPATLETGAVVQIPFHVLEGEVIRVDTVRGEYIER 186

Query:   134 A 134
             A
Sbjct:   187 A 187

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

UNIPROTKB|P0A6N4 efp "protein chain elongation factor EF-P" [Escherichia coli K-12 (taxid:83333)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 37/127 (29%), Positives = 60/127 (47%)

Query:     9 AAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 68
             A G  V D + T LY + +    + +ETFEQL       G    +L +  +  + L++G+
Sbjct:    62 AEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQ 121

Query:    69 ALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDD 128
              +S + P  V   I +     KG T     + A L  G  V VP +++IGE I ++ +  
Sbjct:   122 PISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSG 181

Query:   129 SYIGRAK 135
              Y+ R K
Sbjct:   182 EYVSRVK 188

GO:0043043 "peptide biosynthetic process" evidence=IEA

GO:0043022 "ribosome binding" evidence=IDA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=IEA;IDA

TIGR_CMR|CHY_1872 CHY_1872 "translation elongation factor P" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 30/120 (25%), Positives = 60/120 (50%)

Query:    14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGS 73
             V+ +    LY + D  + ++ ET++Q  +  + FG A  Y++E   +W+  +  + +   
Sbjct:    65 VDRREVQYLYNDGDNFYCMDMETYDQFPLTKEQFGDAINYVKENTNLWVLFFKDKVIGVE 124

Query:    74 IPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
             +P  V   + +     KG T +   + A L+ G  V VP ++E+G+ + I+ +   YI R
Sbjct:   125 LPNFVELKVIDTPPGIKGDTASGGSKPATLETGYVVQVPFFVEVGDVLQIDTRTGQYIKR 184

GO:0003746 "translation elongation factor activity" evidence=ISS

GO:0006414 "translational elongation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	135
PRK00529	186	PRK00529, PRK00529, elongation factor P; Validated	2e-33
TIGR00038	184	TIGR00038, efp, translation elongation factor P	2e-31
PRK14578	187	PRK14578, PRK14578, elongation factor P; Provision	2e-19
cd05794	56	cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Trans	5e-14
pfam09285	56	pfam09285, Elong-fact-P_C, Elongation factor P, C-	5e-14
cd04470	61	cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Trans	1e-12
TIGR02178	186	TIGR02178, yeiP, elongation factor P-like protein	7e-12
smart00841	57	smart00841, Elong-fact-P_C, Elongation factor P, C	1e-11
pfam01132	55	pfam01132, EFP, Elongation factor P (EF-P) OB doma	3e-11
COG0231	131	COG0231, Efp, Translation elongation factor P (EF-	5e-11
PRK12426	185	PRK12426, PRK12426, elongation factor P; Provision	5e-11
PRK04542	189	PRK04542, PRK04542, elongation factor P; Provision	9e-11

>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated

 Score =  114 bits (289), Expect = 2e-33
 Identities = 42/124 (33%), Positives = 67/124 (54%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             VE +    LY + D    +++ET+EQ+EVP D  G A  +L+EGM+V +  Y+G  +S
Sbjct: 63  ADVERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPIS 122

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
             +P  V   + E     KG T +   + A L+ G  V VP ++  GE+I ++ +   Y+
Sbjct: 123 VELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGEKIKVDTRTGEYV 182

Query: 132 GRAK 135
            RAK
Sbjct: 183 ERAK 186

Length = 186

>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P

 Score =  109 bits (276), Expect = 2e-31
 Identities = 39/123 (31%), Positives = 68/123 (55%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             VE++    LY + D+   +++ET+EQ+E+P D+ G A  +L+E M+V +  Y+G  + 
Sbjct: 62  ADVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYNGEPIG 121

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
             +P  V   + E     KG T +   + A L+ G  V VP ++E GE+I ++ +   Y+
Sbjct: 122 VELPNFVELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFIEEGEKIKVDTRTGEYV 181

Query: 132 GRA 134
            RA
Sbjct: 182 ERA 184

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184

>gnl|CDD|173042 PRK14578, PRK14578, elongation factor P; Provisional

 Score = 79.1 bits (195), Expect = 2e-19
 Identities = 43/132 (32%), Positives = 70/132 (53%), Gaps = 5/132 (3%)

Query: 8   FAAGVFVEDKSF-----TCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWL 62
           F +G  VE+  F       LY + D    ++ ET+EQ E+  D F     +L +G +V L
Sbjct: 56  FRSGDKVEEADFERHKGQFLYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLLDGTEVQL 115

Query: 63  QLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIF 122
            L+ GR ++  +P  V  T+ +     K  T T + + A+L+ G+ + VP YLE GE+I 
Sbjct: 116 GLFQGRMVNVDLPMTVELTVTDTAPVMKNATATAQTKEAVLETGLRLQVPPYLESGEKIK 175

Query: 123 INPQDDSYIGRA 134
           ++ +D  +I RA
Sbjct: 176 VDTRDGRFISRA 187

Length = 187

>gnl|CDD|240220 cd05794, S1_EF-P_repeat_2, S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

 Score = 61.8 bits (151), Expect = 5e-14
 Identities = 16/56 (28%), Positives = 28/56 (50%)

Query: 78  VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
           V   + E     KG T +   + A L+ G  V VP +++ GE+I ++ +   Y+ R
Sbjct: 1   VELEVTETEPGVKGDTASSGTKPATLETGAEVQVPLFIKEGEKIKVDTRTGEYVER 56

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P has 3 domains (domains I, II, and III). Domains II and III are S1-like domains. This CD includes domain III (the second S1 domain of EF_P). Domains II and III of have structural homology to the eIF5A domain C, suggesting that domains II and III evolved by duplication. Length = 56

>gnl|CDD|150075 pfam09285, Elong-fact-P_C, Elongation factor P, C-terminal

 Score = 61.3 bits (150), Expect = 5e-14
 Identities = 17/56 (30%), Positives = 28/56 (50%)

Query: 78  VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
           V   + E     KG T +   + A L+ G  V VP ++E GE+I ++ +   Y+ R
Sbjct: 1   VELEVVETEPGVKGDTASSGTKPATLETGAEVQVPLFIEEGEKIKVDTRTGEYVSR 56

Members of this family of nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology. Length = 56

>gnl|CDD|239916 cd04470, S1_EF-P_repeat_1, S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

 Score = 57.9 bits (141), Expect = 1e-12
 Identities = 20/61 (32%), Positives = 37/61 (60%)

Query: 15 EDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSI 74
          E++    LY + D    +++ET+EQ+E+P +  G A  +L+EGM+V +  Y+G  +   +
Sbjct: 1  EEREMQYLYKDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVIVLFYNGEPIGVEL 60

Query: 75 P 75
          P
Sbjct: 61 P 61

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P has 3 domains (domains I, II, and III). Domains II and III are S1-like domains. This CD includes domain II (the first S1 domain of EF_P). Domains II and III have structural homology to the eIF5A domain C, suggesting that domains II and III evolved by duplication. Length = 61

>gnl|CDD|131233 TIGR02178, yeiP, elongation factor P-like protein YeiP

 Score = 59.1 bits (143), Expect = 7e-12
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 1/113 (0%)

Query: 23  YTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACT 81
           Y + +    ++ E +       D       ++ EG+  +++QL DG  ++  +P+ V   
Sbjct: 74  YKDGEEYVFMDEEDYTPYTFDKDAIEDELLFISEGLSGMYVQLIDGSPVALELPQHVVLE 133

Query: 82  IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 134
           I E     KG + + R + A L  G+ V VP Y+  GE I IN  + +++GRA
Sbjct: 134 IVETPPEIKGASASKRPKPAKLITGLVVQVPEYITTGERILINTTERAFMGRA 186

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae [Protein synthesis, Translation factors]. Length = 186

>gnl|CDD|214849 smart00841, Elong-fact-P_C, Elongation factor P, C-terminal

 Score = 55.5 bits (135), Expect = 1e-11
 Identities = 15/57 (26%), Positives = 27/57 (47%), Gaps = 1/57 (1%)

Query: 78  VACTIKEIHASTKGPTVTPRY-RRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
           V   + E     KG T +    + A L+ G  V VP ++  G++I ++ +   Y+ R
Sbjct: 1   VELEVTETEPGVKGDTASGGTKKPATLETGAVVQVPLFINEGDKIKVDTRTGEYVSR 57

These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology. Length = 57

>gnl|CDD|216318 pfam01132, EFP, Elongation factor P (EF-P) OB domain

 Score = 54.4 bits (132), Expect = 3e-11
 Identities = 18/55 (32%), Positives = 33/55 (60%)

Query: 16 DKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 70
           +    LY + D    +++ET+EQ+E+P +  G A  +L+EGM+V +  Y+G  +
Sbjct: 1  RREMQYLYNDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVTVLFYNGEPI 55

Length = 55

>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

 Score = 56.0 bits (136), Expect = 5e-11
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             VE K+   LY + D    ++ ET+EQ E+P D  G A  +L+EGM+V + LY+G  ++
Sbjct: 65  AIVERKTAQYLYIDGDFYVFMDLETYEQYELPKDQIGDAAKFLKEGMEVEVLLYNGEPIA 124

Query: 72  GSIPKRV 78
             +P  V
Sbjct: 125 VELPNFV 131

Length = 131

>gnl|CDD|183522 PRK12426, PRK12426, elongation factor P; Provisional

 Score = 57.2 bits (138), Expect = 5e-11
 Identities = 29/119 (24%), Positives = 61/119 (51%)

Query: 15  EDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSI 74
           E ++   LY E D    ++   ++++ +P ++      +L+ G+ V   +YDG   S  +
Sbjct: 66  EPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSVEL 125

Query: 75  PKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
           P  +   + +        +++   ++ALL+ GV V+VP ++EIG+ I ++ +   YI R
Sbjct: 126 PHFLELMVSKTDFPGDSLSLSGGAKKALLETGVEVLVPPFVEIGDVIKVDTRTCEYIQR 184

Length = 185

>gnl|CDD|179863 PRK04542, PRK04542, elongation factor P; Provisional

 Score = 56.1 bits (136), Expect = 9e-11
 Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 1/83 (1%)

Query: 53  YLQEGMK-VWLQLYDGRALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMV 111
           ++ EGM  + +   DG+ ++  +P+ V   I E   S KG + + R + A L  G+ + V
Sbjct: 106 FIPEGMPGMQVLTVDGQPVALELPQTVDLEIVETAPSIKGASASARTKPATLSTGLVIQV 165

Query: 112 PSYLEIGEEIFINPQDDSYIGRA 134
           P Y+  GE+I IN ++  ++GRA
Sbjct: 166 PEYISTGEKIRINTEERKFMGRA 188

Length = 189

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	135
PRK12426	185	elongation factor P; Provisional	100.0
TIGR02178	186	yeiP elongation factor P-like protein YeiP. This m	100.0
PRK14578	187	elongation factor P; Provisional	100.0
PRK04542	189	elongation factor P; Provisional	100.0
PRK00529	186	elongation factor P; Validated	100.0
TIGR00038	184	efp translation elongation factor P. function: inv	100.0
PF09285	56	Elong-fact-P_C: Elongation factor P, C-terminal; I	99.96
smart00841	56	Elong-fact-P_C Elongation factor P, C-terminal. Th	99.96
cd05794	56	S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elo	99.96
COG0231	131	Efp Translation elongation factor P (EF-P)/transla	99.94
cd04470	61	S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo	99.94
PF01132	55	EFP: Elongation factor P (EF-P) OB domain; InterPr	99.91
cd04463	55	S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin	99.81
TIGR00037	130	eIF_5A translation initiation factor eIF-5A. Obser	99.74
PRK03999	129	translation initiation factor IF-5A; Provisional	99.71
PLN03107	159	eukaryotic translation initiation factor 5A; Provi	99.31
cd04467	57	S1_aIF5A S1_aIF5A: Archaeal translation Initiation	97.91
PF01287	69	eIF-5a: Eukaryotic elongation factor 5A hypusine,	95.43
PTZ00328	166	eukaryotic initiation factor 5a; Provisional	89.7
PF00900	77	Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR	84.15

>PRK12426 elongation factor P; Provisional

Probab=100.00  E-value=1.3e-60  Score=374.14  Aligned_cols=132  Identities=23%  Similarity=0.437  Sum_probs=131.1

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      |||||+++.|++++++|||||.||+.|||||++||||++|+++.+|++.+||+|||.|.++||+|+||+|+||.+|+|+|
T Consensus        54 f~s~ek~e~a~ve~~~~qylY~dg~~~~FMd~etyeQi~i~~~~lgd~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V  133 (185)
T PRK12426         54 FKAGQEVKEAQFEPRNLEYLYLEGDEYLFLDLGNYDKIYIPKEIMKDNFLFLKAGVTVSALVYDGTVFSVELPHFLELMV  133 (185)
T ss_pred             ECCCCeEEEeEEEeeEeEEEEECCCeEEEecCCCceEEEeCHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      ++|+|++||||||+++|||+||||++|+||+||++||+|+||||+|+|++||
T Consensus       134 ~etep~~kgdTat~~~KpAtLeTG~~V~VP~FI~~Gd~IkVdT~~geY~~R~  185 (185)
T PRK12426        134 SKTDFPGDSLSLSGGAKKALLETGVEVLVPPFVEIGDVIKVDTRTCEYIQRV  185 (185)
T ss_pred             EECCCCCCCcccCCCcccEEEcCCCEEEeCCcccCCCEEEEECCCCeEEeeC
Confidence            9999999999999999999999999999999999999999999999999997

>TIGR02178 yeiP elongation factor P-like protein YeiP

Probab=100.00  E-value=7.4e-60  Score=370.07  Aligned_cols=132  Identities=25%  Similarity=0.451  Sum_probs=130.9

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCE-EEEEEECCEEEEEeCCCeEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACT   81 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~-v~v~~~~~~~i~v~lP~~V~l~   81 (135)
                      |||||+++.|++++++|||||.||+.|||||++||||++|+++.+|++.+||+|||+ |.+.+|+|+||+|+||.+|+|+
T Consensus        54 f~s~e~ve~a~le~~~~qylY~dg~~~~FMD~etyEQ~~i~~~~lgd~~~fL~e~~~~v~v~~~~~~~i~v~lP~~V~l~  133 (186)
T TIGR02178        54 FKADDMLDTVELLRREASFSYKDGEEYVFMDEEDYTPYTFDKDAIEDELLFISEGLSGMYVQLIDGSPVALELPQHVVLE  133 (186)
T ss_pred             ECCCCeEEEEEEEEeEeEEEEeCCCeEEEccCCCcEEEEeCHHHhhhhhhhhhCCCEEEEEEEECCEEEEEECCCEEEEE
Confidence            899999999999999999999999999999999999999999999999999999997 9999999999999999999999


Q ss_pred             EEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           82 IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        82 V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      |++|+|++||||+++++|||+||||++|+||+||++||+|+||||||+|++||
T Consensus       134 V~etep~~KGdT~~~~~KpA~LeTG~~v~VP~FI~~Gd~IkVdTrtg~Y~~R~  186 (186)
T TIGR02178       134 IVETPPEIKGASASKRPKPAKLITGLVVQVPEYITTGERILINTTERAFMGRA  186 (186)
T ss_pred             EEECCCCcccccCCCCcccEEEcCCCEEEeCCeecCCCEEEEECCCCcEEccC
Confidence            99999999999999999999999999999999999999999999999999997

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.

>PRK14578 elongation factor P; Provisional

Probab=100.00  E-value=9.6e-60  Score=369.69  Aligned_cols=132  Identities=30%  Similarity=0.499  Sum_probs=131.2

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      |||||++|.|++++++|||||.||+.|||||++||||++||++.+|++.+||+|||+|.+.||+|+||+|+||.+|+|+|
T Consensus        56 f~s~d~ve~a~ve~~~~qylY~dg~~~~FMD~etyEQ~~i~~~~~g~~~~fL~e~~~v~v~~~~~~~i~v~lP~~V~l~V  135 (187)
T PRK14578         56 FRSGDKVEEADFERHKGQFLYADGDRGVFMDLETYEQFEMEEDAFSAIAPFLLDGTEVQLGLFQGRMVNVDLPMTVELTV  135 (187)
T ss_pred             ECCCCEEEEeEEEEeEeEEEEeCCCEEEEecCCCcEEEEecHHHhhhHHhhccCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      ++|+|++||||+++++|||+||||++|+||+||++||+|+||||||+|++||
T Consensus       136 ~~tep~~KGdT~t~~~KpA~leTG~~v~VP~FI~~Gd~I~VdT~~g~Y~~R~  187 (187)
T PRK14578        136 TDTAPVMKNATATAQTKEAVLETGLRLQVPPYLESGEKIKVDTRDGRFISRA  187 (187)
T ss_pred             EECCCccccCccCCCcceEEEcCCCEEEeCCcccCCCEEEEECCCCcEEeeC
Confidence            9999999999999999999999999999999999999999999999999997

>PRK04542 elongation factor P; Provisional

Probab=100.00  E-value=2.2e-59  Score=368.21  Aligned_cols=133  Identities=25%  Similarity=0.432  Sum_probs=131.7

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCE-EEEEEECCEEEEEeCCCeEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK-VWLQLYDGRALSGSIPKRVACT   81 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~-v~v~~~~~~~i~v~lP~~V~l~   81 (135)
                      |||||++|.|++++++|||||.||+.|||||++||||++||++++|++.+||+|||+ |.+++|+|+||+|+||.+|+|+
T Consensus        56 frs~ekve~a~~~~~~~qylY~dg~~~~FMd~etyEQ~~i~~~~lgd~~~~L~e~~~~v~v~~~~~~~i~v~lP~~V~l~  135 (189)
T PRK04542         56 FKGDDILDTVDLTRRPVTFSYIDGDEYVFMDNEDYTPYTFKKDQIEDELLFIPEGMPGMQVLTVDGQPVALELPQTVDLE  135 (189)
T ss_pred             ECCCCeEEEEEEEEeEeEEEEeCCCEEEEecCCCceEEEECHHHhhhHhhhhhcCCEEEEEEEECCEEEEEECCCEEEEE
Confidence            899999999999999999999999999999999999999999999999999999998 9999999999999999999999


Q ss_pred             EEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740           82 IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK  135 (135)
Q Consensus        82 V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k  135 (135)
                      |++|+|++||||+++++|||+||||++|+||+||++||+|+||||+|+|++||.
T Consensus       136 V~etep~~kGdT~~~~~KpAtLetG~~v~VP~FI~~Gd~I~VdT~tgeYv~R~~  189 (189)
T PRK04542        136 IVETAPSIKGASASARTKPATLSTGLVIQVPEYISTGEKIRINTEERKFMGRAD  189 (189)
T ss_pred             EEECCCCccccccCCCCccEEEcCCCEEEeCCcccCCCEEEEECCCCcEEeecC
Confidence            999999999999999999999999999999999999999999999999999984

>PRK00529 elongation factor P; Validated

Probab=100.00  E-value=1.2e-56  Score=350.53  Aligned_cols=134  Identities=32%  Similarity=0.534  Sum_probs=132.3

Q ss_pred             ccccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEE
Q 032740            2 FINAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACT   81 (135)
Q Consensus         2 ~~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~   81 (135)
                      -|+++++++.+.++++++||||.||+.|+|||+|||||++||++.++++.+||+|||+|++.+|+|+||+|+||++|+|+
T Consensus        53 ~f~~~e~ve~~~ve~~~~q~ly~dgd~~~fMD~etyeq~~l~~~~lg~~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~  132 (186)
T PRK00529         53 TFKAGDKVERADVERREMQYLYNDGDGYVFMDTETYEQIEVPADQVGDAAKFLKEGMEVTVVFYNGEPISVELPNFVELE  132 (186)
T ss_pred             EeCCCCEEEeccEEeEEEEEEEECCCEEEEecCCCceeeEcCHHHhHHHHhhccCCCEEEEEEECCEEEEEECCCEEEEE
Confidence            37999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740           82 IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK  135 (135)
Q Consensus        82 V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k  135 (135)
                      |++|+|++||||+++++|||+||||++|+||+||++||+|+||||+|+|++|||
T Consensus       133 V~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fI~~Gd~I~v~T~~g~y~~R~~  186 (186)
T PRK00529        133 VTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGEKIKVDTRTGEYVERAK  186 (186)
T ss_pred             EEECCCCccCcccCCCcccEEEcCCCEEEeCCeecCCCEEEEECCCCcEEeecC
Confidence            999999999999999999999999999999999999999999999999999996

>TIGR00038 efp translation elongation factor P

Probab=100.00  E-value=1.2e-56  Score=350.37  Aligned_cols=132  Identities=30%  Similarity=0.546  Sum_probs=131.1

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      |+++++++.+.++++++||||.||+.|+|||++||||++|+++.++++.+||+|||+|.+.||+|+||+|+||++|+|+|
T Consensus        53 f~~~~kve~~~~e~~~~q~ly~dgd~~~fMD~etyeq~~i~~~~l~~~~~~L~eg~~v~v~~~~~~~i~v~lP~~v~l~V  132 (184)
T TIGR00038        53 FRSGEKVEKADVEEREMQYLYKDGDSYVFMDTETYEQIELPKDLLGDAAKFLKENMEVSVTFYNGEPIGVELPNFVELEV  132 (184)
T ss_pred             eCCCCEEEcccEEeEEEEEEEECCCEEEEeCCCCccceEcCHHHHHHHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      ++|+|++|||||++++|||+||||++|+||+||++||+|+||||+|+|++||
T Consensus       133 ~~t~p~~kg~t~~~~~K~A~letG~~v~VP~fi~~Gd~I~v~T~~g~y~~R~  184 (184)
T TIGR00038       133 TETEPGVKGDTASGGTKPATLETGAVVQVPLFIEEGEKIKVDTRTGEYVERA  184 (184)
T ss_pred             EECCCCccccccCCCcccEEEcCCCEEEeCCcccCCCEEEEECCCCcEEecC
Confidence            9999999999999999999999999999999999999999999999999997

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.

>PF09285 Elong-fact-P_C: Elongation factor P, C-terminal; InterPro: IPR015365 These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology []

Probab=99.96  E-value=1.1e-29  Score=165.46  Aligned_cols=56  Identities=32%  Similarity=0.629  Sum_probs=50.3

Q ss_pred             EEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEee
Q 032740           78 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR  133 (135)
Q Consensus        78 V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R  133 (135)
                      |+|+|++|+|++||||+++++|+|+|+||++||||+||++||+|+|||++|+|++|
T Consensus         1 V~l~V~etep~~kg~t~~~~~K~A~letG~~i~VP~FI~~Gd~I~VdT~~g~Yv~R   56 (56)
T PF09285_consen    1 VELEVVETEPAVKGDTASSSYKPATLETGAEIQVPLFIEEGDKIKVDTRDGSYVER   56 (56)
T ss_dssp             EEEEEEEE-SSSTTSSSSTTEEEEEETTS-EEEEETT--TT-EEEEETTTTEEEEE
T ss_pred             CEEEEEECCCCccCcccCCCccEEEEcCCCEEEccceecCCCEEEEECCCCeEeCC
Confidence            68999999999999999999999999999999999999999999999999999998

; GO: 0043043 peptide biosynthetic process, 0005737 cytoplasm; PDB: 1YBY_A 3OYY_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H.

>smart00841 Elong-fact-P_C Elongation factor P, C-terminal

Probab=99.96  E-value=1.1e-29  Score=165.54  Aligned_cols=56  Identities=27%  Similarity=0.515  Sum_probs=55.0

Q ss_pred             EEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEee
Q 032740           78 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR  133 (135)
Q Consensus        78 V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R  133 (135)
                      |+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+|||++|+|++|
T Consensus         1 V~l~V~etep~vkG~T~~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~R   56 (56)
T smart00841        1 VELEVTETEPGVKGDTASGGTKPATLETGAVVQVPLFINEGDKIKVDTRTGEYVSR   56 (56)
T ss_pred             CEEEEEECCCCccccccCCCcceEEECCCCEEEcCCcccCCCEEEEECCCCcEEcC
Confidence            58999999999999999999999999999999999999999999999999999998

These nucleic acid binding domains are predominantly found in elongation factor P, where they adopt an OB-fold, with five beta-strands forming a beta-barrel in a Greek-key topology PUBMED:15210970.

>cd05794 S1_EF-P_repeat_2 S1_EF-P_repeat_2: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.96  E-value=1.2e-29  Score=165.38  Aligned_cols=56  Identities=29%  Similarity=0.526  Sum_probs=55.0

Q ss_pred             EEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEee
Q 032740           78 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR  133 (135)
Q Consensus        78 V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R  133 (135)
                      |+|+|++|+|++||||+++++|||+||||++|+||+||++||+|+||||+|+|++|
T Consensus         1 v~l~V~etep~~kG~T~~~~~K~A~letG~~i~VP~FI~~Gd~I~V~T~~g~Y~~R   56 (56)
T cd05794           1 VELEVTETEPGVKGDTASSGTKPATLETGAEVQVPLFIKEGEKIKVDTRTGEYVER   56 (56)
T ss_pred             CEEEEEECCCCccccccCCCcceEEECCCCEEEcCCeecCCCEEEEECCCCcEecC
Confidence            58999999999999999999999999999999999999999999999999999998

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=99.94  E-value=7.1e-27  Score=174.58  Aligned_cols=76  Identities=34%  Similarity=0.527  Sum_probs=74.8

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRV   78 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V   78 (135)
                      |+|+++++.|.|+++++||||.||+.|+|||+|||||++++++.++++.+||+|||+|++++|+|+|++++||.+|
T Consensus        56 f~~~~kve~a~ie~~~~q~lY~dg~~~~FMD~etyeq~~v~~~~~~d~~~~l~eg~~v~v~~~~g~~i~v~lP~~v  131 (131)
T COG0231          56 FKADDKVEVAIVERKTAQYLYIDGDFYVFMDLETYEQYELPKDQIGDAAKFLKEGMEVEVLLYNGEPIAVELPNFV  131 (131)
T ss_pred             EcCCCEEEEeEEeeeeEEEEEcCCCeEEEccCCCceEEEecchhhhhHHHhcCCCCEEEEEEECCEEEEEECCCCC
Confidence            8999999999999999999999999999999999999999999999999999999999999999999999999975

>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.94  E-value=7.5e-27  Score=153.80  Aligned_cols=61  Identities=33%  Similarity=0.758  Sum_probs=59.7

Q ss_pred             EEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCC
Q 032740           15 EDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIP   75 (135)
Q Consensus        15 ~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP   75 (135)
                      +++++||||.||+.|||||++||||++|+++.+|++.+||+|||+|.|++|+|+||+|+||
T Consensus         1 e~~~~qylY~dg~~~~FMd~etyeQ~~i~~~~igd~~~~L~e~~~v~v~~~~~~~i~v~lP   61 (61)
T cd04470           1 EEREMQYLYKDGDNYVFMDTETYEQIELPKEALGDAAKFLKEGMEVIVLFYNGEPIGVELP   61 (61)
T ss_pred             CCceEEEEEeCCCEEEEeCCCCceEEEECHHHhhhHHhhCcCCCEEEEEEECCEEEEEECc
Confidence            4789999999999999999999999999999999999999999999999999999999999

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []

Probab=99.91  E-value=3.4e-24  Score=138.44  Aligned_cols=55  Identities=36%  Similarity=0.748  Sum_probs=50.0

Q ss_pred             EeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEE
Q 032740           16 DKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL   70 (135)
Q Consensus        16 ~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i   70 (135)
                      +|++||||.||+.|||||++||||++|+++.+|++.+||+|||+|+|++|+|+||
T Consensus         1 ~r~~qylY~dgd~~~FMd~etyeQi~v~~~~~g~~~~~L~eg~~v~v~~~~~~~I   55 (55)
T PF01132_consen    1 RREMQYLYKDGDNYVFMDTETYEQIEVPKDQLGDALKFLKEGMEVQVLFYEGKPI   55 (55)
T ss_dssp             EEEEEEEEEESSEEEEEETTT--EEEEEHHHHTTTGCC--TTEEEEEEEETTEEE
T ss_pred             CceEEEEEeCCCEEEEecCCCceEEEecHHHhChHHhhCcCCCEEEEEEECCEEC
Confidence            6899999999999999999999999999999999999999999999999999997

Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.

>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain

Probab=99.81  E-value=6.9e-20  Score=117.16  Aligned_cols=55  Identities=18%  Similarity=0.269  Sum_probs=51.8

Q ss_pred             eeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEE
Q 032740           17 KSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG   72 (135)
Q Consensus        17 ~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v   72 (135)
                      +++||||.||+.|+|||++||||++++++.. ++.+||+||++|.|.+|+|+|+++
T Consensus         1 ~~~qylY~dg~~~~fMd~etyeq~~v~~~~~-~~~~~l~eg~~v~v~~~~g~~i~~   55 (55)
T cd04463           1 RELQVLDIQGSKPVTMDLETYEVVQVPPPVD-QSFESFEPGEVVLVDTRTGQYVGV   55 (55)
T ss_pred             CCEEEEEcCCCEeEEecCCCceEEEeCHHHh-hHHhhCCCCCEEEEEEECCEEEeC
Confidence            5799999999999999999999999999985 599999999999999999999874

The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.

>TIGR00037 eIF_5A translation initiation factor eIF-5A

Probab=99.74  E-value=9.9e-18  Score=125.06  Aligned_cols=66  Identities=17%  Similarity=0.210  Sum_probs=61.8

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL   70 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i   70 (135)
                      |+|+++++.+.++++++||||.||+.|+|||++||||+.|+.+.  +..+||+||++|.++-.-|+..
T Consensus        60 f~s~~~ve~~~ve~~~~qylY~dg~~~~fMd~etyeq~~i~~~~--~~~~~Lke~~~V~v~~~~g~~~  125 (130)
T TIGR00037        60 SPSTSKVEVPIVDRREYQVLAIMGGMVQLMDLDTYETDELPIPE--ELGDSLEPGFEVEYIEAMGQEK  125 (130)
T ss_pred             ECCCCEEEEeEEEEEEEEEEEecCCEEEEEcCCCcEEEEecCCh--hHHHHhhcCCEEEEEecCCeEE
Confidence            79999999999999999999999999999999999999999986  8899999999999888777644

Observed in eukaryotes and archaea.

>PRK03999 translation initiation factor IF-5A; Provisional

Probab=99.71  E-value=2.6e-17  Score=122.62  Aligned_cols=64  Identities=22%  Similarity=0.215  Sum_probs=59.3

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR   68 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~   68 (135)
                      |+++++++.+.++++++||||.||+.|+|||+|||||++|+++  +|+..||+|||+|.++---|+
T Consensus        59 ~~s~d~~e~~~ve~~~~qylY~dg~~~~fMd~eTyeq~~i~~~--~d~~~~l~eg~~v~v~~~~g~  122 (129)
T PRK03999         59 QPVDAKVEVPIIEKKTGQVLSIMGDVVQLMDLETYETFEIPIP--EELKDKLEPGVEVEYWEAMGR  122 (129)
T ss_pred             ecCCCceeeeeEEeEEEEEEEecCCEEEEecCCCceEEEecCC--hhHHhhCcCCCEEEEEhhCCe
Confidence            7899999999999999999999999999999999999999998  999999999999987654443

>PLN03107 eukaryotic translation initiation factor 5A; Provisional

Probab=99.31  E-value=7.3e-12  Score=96.52  Aligned_cols=64  Identities=11%  Similarity=0.168  Sum_probs=52.6

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeE-EEEeC--CCceeEEeCh---hhhccccccccCCCEEEEEEEC
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTA-FVIES--ETFEQLEVPL---DVFGKAGAYLQEGMKVWLQLYD   66 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~-~FMd~--etyeQ~~i~~---~~~g~~~~fL~eg~~v~v~~~~   66 (135)
                      |+|+++++.+.|+++++||||.||+.| +|||+  ++|||+.||+   ++...-..+..+|.++.|..|.
T Consensus        74 f~s~~~ve~~~ve~~~~qyly~dgd~y~~fMD~~get~eqi~v~~~~~el~~~i~~~f~~g~~~~v~v~~  143 (159)
T PLN03107         74 VPSSHNCDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTEDDTLAEQIKDGFDEGKDLVVTVMS  143 (159)
T ss_pred             ecCCCEEEEEEEEEEEEEEEEEcCCceEEEEcCCCCcceeEEccCcchHHHHHHHHHHhCCCeEEEEEEe
Confidence            799999999999999999999999995 99999  6999999986   3333333455779886666664

>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain

Probab=97.91  E-value=5.3e-05  Score=49.61  Aligned_cols=53  Identities=26%  Similarity=0.329  Sum_probs=43.8

Q ss_pred             EEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCE
Q 032740           14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR   68 (135)
Q Consensus        14 i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~   68 (135)
                      |+++..|-++.+|+..-+||+||||-++++..  .+...-+++|.+|..+-.-|+
T Consensus         1 i~k~~aqVisi~g~~vQlMD~eTYeT~ev~~p--~~~~~~i~~G~eV~y~~~~g~   53 (57)
T cd04467           1 IERKTGQVLSIMGDVVQLMDLETYETFEVPIP--EEIKDKLEPGKEVEYWESMGK   53 (57)
T ss_pred             CcceEEEEEEEcCCEEEEeccccceeEEEecc--hhhcccCCCCCEEEEEeecCe
Confidence            57999999999999999999999999999985  232345899999886655565

aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []

Probab=95.43  E-value=0.09  Score=35.42  Aligned_cols=52  Identities=23%  Similarity=0.340  Sum_probs=37.7

Q ss_pred             EEEEeeEEEEEccCC-eEEEEeCCCceeEE---eChhhhcccc-ccccCCCEEEEEEE
Q 032740           13 FVEDKSFTCLYTEND-TAFVIESETFEQLE---VPLDVFGKAG-AYLQEGMKVWLQLY   65 (135)
Q Consensus        13 ~i~~~~~~ylY~dgd-~~~FMd~etyeQ~~---i~~~~~g~~~-~fL~eg~~v~v~~~   65 (135)
                      .|+++++|.+--++| ...+|| ++|+..+   +|...++..+ .-+.+|..+.|..+
T Consensus         1 ~V~r~eyqli~I~~Dg~lsLMd-e~get~eDl~lP~~el~~ei~~~~~~g~~~~Vtv~   57 (69)
T PF01287_consen    1 IVKRKEYQLIDIDGDGFLSLMD-EDGETREDLKLPDGELGEEIKAKFEEGKEVLVTVL   57 (69)
T ss_dssp             -EEEEEEEEEEEETTTEEEEEE-TTS-EEEEEECCSHHHHHHHHHHHHTTCEEEEEEE
T ss_pred             CeEEEEEEEEEEccCcEEEEEc-CCCCeeccEEecccchhHHHHhhccCCCeEEEEEE
Confidence            478999999999988 667999 8888877   7855565443 45588888544444

Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.

>PTZ00328 eukaryotic initiation factor 5a; Provisional

Probab=89.70  E-value=1.4  Score=34.54  Aligned_cols=63  Identities=10%  Similarity=0.157  Sum_probs=48.6

Q ss_pred             ccccceEeeEEEEeeEEEEEccCCe-------EEEEeCCCceeEEeCh---hhhcc-ccccccCCCEEEEEEEC
Q 032740            4 NAIYFAAGVFVEDKSFTCLYTENDT-------AFVIESETFEQLEVPL---DVFGK-AGAYLQEGMKVWLQLYD   66 (135)
Q Consensus         4 ~~~~~~e~~~i~~~~~~ylY~dgd~-------~~FMd~etyeQ~~i~~---~~~g~-~~~fL~eg~~v~v~~~~   66 (135)
                      .+...++...++++++|.+-.++|.       ..+||.+.|+-..|+.   +.++. -...+.+|.++.|..|.
T Consensus        77 Ps~hnv~VP~V~r~~yqli~I~~d~~~~~~g~v~LMd~~g~~k~dl~lp~~~el~~~ik~~f~~g~ev~v~vi~  150 (166)
T PTZ00328         77 PSTHNVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGESREDLDMPPDAALATQIKEQFDSGKEVLVVVVS  150 (166)
T ss_pred             CccceeEeeeEEeeEEEEEEEcCCCcccccceEEEEcCCCCeeecccCCChhHHHHHHHHHhcCCCeEEEEEEh
Confidence            4556789999999999999998873       6799999998777543   33332 34566899999888875

>PF00900 Ribosomal_S4e: Ribosomal family S4e; InterPro: IPR013845 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=84.15  E-value=1.2  Score=30.40  Aligned_cols=34  Identities=9%  Similarity=0.178  Sum_probs=27.1

Q ss_pred             CCceeEEEecCcEEEcc-cceecCCEEEEeCCCCe
Q 032740           96 PRYRRALLDNGVTVMVP-SYLEIGEEIFINPQDDS  129 (135)
Q Consensus        96 ~~~K~A~LetG~~i~VP-~FI~~Gd~I~VdT~~g~  129 (135)
                      ++-=...|..|..|..| +-++.||.|+|+..+++
T Consensus        41 gG~~ql~~hDGrni~~~~~~~k~~Dtv~i~l~~~k   75 (77)
T PF00900_consen   41 GGKPQLNTHDGRNIRYPDPDIKTNDTVVIDLPTQK   75 (77)
T ss_dssp             GGEEEEEETTTEEEES-SST--TTEEEEEETTTTE
T ss_pred             CCcEEEEecCceEEEcCcCCccCCCEEEEECCCCc
Confidence            34457889999999999 99999999999999886

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. A number of eukaryotic and archaeal ribosomal proteins can be grouped on the basis of sequence similarities. One of these families includes yeast S7 (YS6); archaeal S4e; and mammalian and plant cytoplasmic S4 []. Two highly similar isoforms of mammalian S4 exist, one coded by a gene on chromosome Y, and the other on chromosome X. These proteins have 233 to 264 amino acids. This entry represents the central region of these proteins.; PDB: 2XZM_W 2XZN_W 3IZ6_D 3KBG_A 3U5G_E 3U5C_E 3IZB_D.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	135
1ueb_A	184	Crystal Structure Of Translation Elongation Factor		1e-10
3a5z_B	191	Crystal Structure Of Escherichia Coli Genx In Compl		3e-10
3tre_A	191	Structure Of A Translation Elongation Factor P (Efp		4e-08
1yby_A	215	Conserved Hypothetical Protein Cth-95 From Clostrid		2e-07
3oyy_A	191	Structure Of Pseudomonas Aeruginosa Elongation Fact		7e-05

>pdb|1UEB|A Chain A, Crystal Structure Of Translation Elongation Factor P From Thermus Thermophilus Hb8 Length = 184

Iteration: 1
 Score = 62.0 bits (149), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 1/123 (0%)
Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           ++VE +    LY E +    ++ ET+EQ  VP      A  + +EGM     +Y+G+ + 
Sbjct: 63  IYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIK 121
Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            + P  V   + +     +G TV+   + A L+ G  V VP ++E GE I ++ +   Y+
Sbjct: 122 VTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYV 181
Query: 132 GRA 134
           GRA
Sbjct: 182 GRA 184

>pdb|3A5Z|B Chain B, Crystal Structure Of Escherichia Coli Genx In Complex With Elongation Factor P Length = 191

Iteration: 1
 Score = 60.5 bits (145), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 60/127 (47%)
Query: 9   AAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR 68
           A G  V D + T LY + +    + +ETFEQL       G    +L +  +  + L++G+
Sbjct: 65  AEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQ 124
Query: 69  ALSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDD 128
            +S + P  V   I +     KG T     + A L  G  V VP +++IGE I ++ +  
Sbjct: 125 PISVTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSG 184
Query: 129 SYIGRAK 135
            Y+ R K
Sbjct: 185 EYVSRVK 191

>pdb|3TRE|A Chain A, Structure Of A Translation Elongation Factor P (Efp) From Coxiella Burnetii Length = 191

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 52/114 (45%)
Query: 22  LYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACT 81
           LY + +      SE +EQ     +   +A  +L+E     +  ++G  LS   P  V   
Sbjct: 78  LYNDGEFWHFXTSENYEQHAASKEAVAEAKQWLKEEALCXVTXWNGVPLSVEPPNFVELK 137
Query: 82  IKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 135
           I E     +G T T   +RA L+ G  V VP +L  GE I ++ +   Y+ RAK
Sbjct: 138 ITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK 191

>pdb|1YBY|A Chain A, Conserved Hypothetical Protein Cth-95 From Clostridium Thermocellum Length = 215

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/120 (26%), Positives = 56/120 (46%)
Query: 14  VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGS 73
           +E K    LY + D  +  ++ETFEQL +  D  G A  +++E   V +  + G      
Sbjct: 95  IERKDXQYLYNDGDLYYFXDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIE 154
Query: 74  IPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGR 133
            P  V   + +     KG T T   + A+++ G ++ VP ++  G+ I I+ +   Y  R
Sbjct: 155 PPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYXER 214

>pdb|3OYY|A Chain A, Structure Of Pseudomonas Aeruginosa Elongation Factor P Length = 191

Iteration: 1
 Score = 42.4 bits (98), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 49/111 (44%), Gaps = 2/111 (1%)
Query: 27  DTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQ--LYDGRALSGSIPKRVACTIKE 84
           D  +V     F Q E+  D       ++++GM    +   Y+ + +S  +P  +   I  
Sbjct: 80  DPLYVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVRQIAY 139
Query: 85  IHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK 135
              + +G T     + A L+NG  + V ++ EIG+ I I+ +   Y  R K
Sbjct: 140 TEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVK 190

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	135
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	2e-29
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	7e-29
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	5e-28
1yby_A	215	Translation elongation factor P; conserved hypothe	1e-27
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	3e-24
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	1e-06
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	4e-05
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	6e-04

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli} Length = 191

 Score =  104 bits (262), Expect = 2e-29
 Identities = 35/124 (28%), Positives = 58/124 (46%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             V D + T LY + +    + +ETFEQL       G    +L +  +  + L++G+ +S
Sbjct: 68  ADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPIS 127

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            + P  V   I +     KG T     + A L  G  V VP +++IGE I ++ +   Y+
Sbjct: 128 VTPPNFVELEIVDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYV 187

Query: 132 GRAK 135
            R K
Sbjct: 188 SRVK 191

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191

 Score =  102 bits (258), Expect = 7e-29
 Identities = 35/124 (28%), Positives = 56/124 (45%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             V +     LY + +    + SE +EQ     +   +A  +L+E     + +++G  LS
Sbjct: 68  ADVVEVEMQYLYNDGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLS 127

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
              P  V   I E     +G T T   +RA L+ G  V VP +L  GE I ++ +   Y+
Sbjct: 128 VEPPNFVELKITETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYV 187

Query: 132 GRAK 135
            RAK
Sbjct: 188 SRAK 191

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184

 Score =  100 bits (252), Expect = 5e-28
 Identities = 36/123 (29%), Positives = 62/123 (50%), Gaps = 1/123 (0%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
           ++VE +    LY E +    ++ ET+EQ  VP      A  + +EGM     +Y+G+ + 
Sbjct: 63  IYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGAE-FFKEGMTALGDMYEGQPIK 121

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
            + P  V   + +     +G TV+   + A L+ G  V VP ++E GE I ++ +   Y+
Sbjct: 122 VTPPTVVELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYV 181

Query: 132 GRA 134
           GRA
Sbjct: 182 GRA 184

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum} Length = 215

 Score =  100 bits (252), Expect = 1e-27
 Identities = 32/122 (26%), Positives = 58/122 (47%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALS 71
             +E K    LY + D  + +++ETFEQL +  D  G A  +++E   V +  + G    
Sbjct: 93  AHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFG 152

Query: 72  GSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYI 131
              P  V   + +     KG T T   + A+++ G ++ VP ++  G+ I I+ +   Y+
Sbjct: 153 IEPPNFVELEVTDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYM 212

Query: 132 GR 133
            R
Sbjct: 213 ER 214

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191

 Score = 91.1 bits (227), Expect = 3e-24
 Identities = 29/126 (23%), Positives = 54/126 (42%), Gaps = 3/126 (2%)

Query: 12  VFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGM--KVWLQLYDGRA 69
           + ++ K  T  Y  +   +V     F Q E+  D       ++++GM        Y+ + 
Sbjct: 66  IILDRKEVTYSYFADPL-YVFMDSEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKV 124

Query: 70  LSGSIPKRVACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDS 129
           +S  +P  +   I     + +G T     + A L+NG  + V ++ EIG+ I I+ +   
Sbjct: 125 ISVELPTTIVRQIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGE 184

Query: 130 YIGRAK 135
           Y  R K
Sbjct: 185 YKSRVK 190

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138

 Score = 43.9 bits (104), Expect = 1e-06
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 2/58 (3%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLD--VFGKAGAYLQEGMKVWLQLYDGR 68
            ++ K+   +    DT  +++ ET+E  EVP+D  V  +    L+EG+ V      GR
Sbjct: 70  IIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGR 127

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 11/57 (19%), Positives = 23/57 (40%), Gaps = 1/57 (1%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFG-KAGAYLQEGMKVWLQLYDGR 68
            +E  +   L    D   +++   ++ +EVP+     +A   L  G +V +     R
Sbjct: 72  IIEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDR 128

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 11/58 (18%), Positives = 25/58 (43%), Gaps = 3/58 (5%)

Query: 13  FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRAL 70
            ++ +    L    D   +++ +T+E LE+P+    +    L+ G +V      G+  
Sbjct: 74  IIDRRKGQVLAIMGDMVQIMDLQTYETLELPIP---EGIEGLEPGGEVEYIEAVGQYK 128

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	135
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	100.0
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	100.0
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	100.0
1yby_A	215	Translation elongation factor P; conserved hypothe	100.0
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	100.0
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	99.86
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	99.84
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	99.8
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	99.8
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	99.71
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	99.67
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	99.61

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.2e-59  Score=368.72  Aligned_cols=132  Identities=22%  Similarity=0.370  Sum_probs=128.4

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCE--EEEEEECCEEEEEeCCCeEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMK--VWLQLYDGRALSGSIPKRVAC   80 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~--v~v~~~~~~~i~v~lP~~V~l   80 (135)
                      ||||++++.|+++++++||||.||+.|+||| +||||++||++.+|++.+||+|||+  |++++|+|+||+|+||++|+|
T Consensus        57 f~s~ekve~~~ver~~~qylY~dgd~~~FMD-etyEq~~l~~~~lgd~~~~L~eg~~~~v~v~~~~~~~i~v~lP~~V~l  135 (191)
T 3oyy_A           57 FKADDKLEPIILDRKEVTYSYFADPLYVFMD-SEFNQYEIEKDDLEGVLTFIEDGMTDICEAVFYNDKVISVELPTTIVR  135 (191)
T ss_dssp             EETTCEEEECCCEEEEEEEEEECSSSEEEEE-TTCCEEEECGGGCTTTGGGCCTTCCCCEEEEEETTEEEEEECCSEEEE
T ss_pred             eCCCCEEEeeeEEEEEEEEEEecCCEEEEEe-cChhheeCChHHhhhHHhhCcCCCEeEEEEEEECCEEEEEECCCEEEE
Confidence            8999999999999999999999999999999 9999999999999999999999999  999999999999999999999


Q ss_pred             EEEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740           81 TIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK  135 (135)
Q Consensus        81 ~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k  135 (135)
                      +|++|+|++||||||+++|||+||||++|+||+||++||+|+||||||+|++|||
T Consensus       136 ~V~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~k  190 (191)
T 3oyy_A          136 QIAYTEPAVRGDTSGKVMKTARLNNGAELQVSAFCEIGDSIEIDTRTGEYKSRVK  190 (191)
T ss_dssp             EEEEECCCCSCCCC--CEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC-
T ss_pred             EEEEcCCCccccccCCCCceEEEeCCCEEEeCCeeeCCCEEEEECCCCeEhhhcc
Confidence            9999999999999999999999999999999999999999999999999999996

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V

Probab=100.00  E-value=2.2e-59  Score=365.20  Aligned_cols=131  Identities=28%  Similarity=0.505  Sum_probs=130.2

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      ||||++++.|++++++|||||.||+.|+|||+|||||++||++.+|++ +||+|||+|++++|+|+||+|+||++|+|+|
T Consensus        54 f~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeq~~l~~~~lgd~-~~L~eg~~v~v~~~~g~~i~v~lP~~V~l~V  132 (184)
T 1ueb_A           54 FNSGEKLEDIYVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPTVVELKV  132 (184)
T ss_dssp             EETTCEEEECCEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCSEEEEEE
T ss_pred             ECCCCEEEeeeEEEEEEEEEEeCCCEEEEeeCCCceeEEcCHHHcChh-hhcCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            899999999999999999999999999999999999999999999999 9999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      ++|+|++|||||++++|||+||||++|+||+||++||+|+||||+|+|++||
T Consensus       133 ~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~vdT~~g~Y~~R~  184 (184)
T 1ueb_A          133 VDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA  184 (184)
T ss_dssp             EECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEcCCCCcccccCCCCccEEEcCCCEEEeCCcCcCCCEEEEECCCCeEeccC
Confidence            9999999999999999999999999999999999999999999999999997

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}

Probab=100.00  E-value=2e-60  Score=373.07  Aligned_cols=133  Identities=26%  Similarity=0.384  Sum_probs=75.6

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      ||||++++.|+++++++||||.||+.|+|||++||||++||++.+|++.+||+|||+|++++|+|+||+|+||++|+|+|
T Consensus        59 f~s~ekve~~~ver~~~qylY~dgd~~~FMD~etyEq~~l~~~~lgd~~~~L~eg~~v~v~~~~~~~i~v~lP~~V~l~V  138 (191)
T 3tre_A           59 FKSGETLPAADVVEVEMQYLYNDGEFWHFMTSENYEQHAASKEAVAEAKQWLKEEALCMVTMWNGVPLSVEPPNFVELKI  138 (191)
T ss_dssp             EETTCEECBCCEEEEEEEEEEECSSCEEEEESSSCCEEEECHHHHGGGGGGCCTTCEEEEEEETTEEEEEECCSCC----
T ss_pred             eCCCCEEEeceEEEEEEEEEEEcCCcEEEccCCchHheecchhHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK  135 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k  135 (135)
                      ++|+|++|||||++++|||+||||++|+||+||++||+|+||||||+|++|||
T Consensus       139 ~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~k  191 (191)
T 3tre_A          139 TETEPGVRGDTATGGTKRAKLETGAVVRVPLFLNEGEIIKVDTRRGEYVSRAK  191 (191)
T ss_dssp             -----------------------------------------------------
T ss_pred             EEcCCCCcccccCCCcCeEEEeCCCEEEeCCeEcCCCEEEEECCCCeEecccC
Confidence            99999999999999999999999999999999999999999999999999996

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}

Probab=100.00  E-value=3.5e-59  Score=371.91  Aligned_cols=132  Identities=25%  Similarity=0.408  Sum_probs=124.2

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      ||+|++++.|++++++|||||.||+.|+|||+|||||++||++.+||+.+||+|||+|++++|+|+||+|+||++|+|+|
T Consensus        84 f~s~ekve~a~verr~~QylY~Dgd~y~FMD~ETyEQi~l~~~~lgd~~~fLkEg~~v~v~~~~g~~i~velP~~V~l~V  163 (215)
T 1yby_A           84 FNPTDKMPKAHIERKDMQYLYNDGDLYYFMDTETFEQLPLGKDKIGDALKFVKENEIVKVLSHKGNVFGIEPPNFVELEV  163 (215)
T ss_dssp             ECTTCEECBCCCEEEEEEEEEEETTEEEEECTTTCCEEEEEHHHHTTTTTTCCTTCEEEEEEETTEEEEEECCSEEEEEE
T ss_pred             ECCCCEEecceEEEEEEEEEEeCCCEEEEccCCCCeeEEecHHHhhhHHhhCCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      ++|+|++|||||++++|||+||||++|+||+||++||+|+||||||+|++||
T Consensus       164 ~eteP~vkGdTa~~~~KpA~leTG~~v~VP~FI~~Gd~I~VdT~~g~Y~~R~  215 (215)
T 1yby_A          164 TDTEPGFKGDTATGATKPAIVETGASIKVPLFVNKGDIIRIDTRTGEYMERV  215 (215)
T ss_dssp             EEC-------CCSCCEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEcCCCccccccCCCCccEEEeCCcEEEeCCcEeCCCEEEEECCCCeEeccC
Confidence            9999999999999999999999999999999999999999999999999997

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}

Probab=100.00  E-value=7.4e-61  Score=375.63  Aligned_cols=133  Identities=28%  Similarity=0.444  Sum_probs=80.6

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCCeEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPKRVACTI   82 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~~V~l~V   82 (135)
                      ||||++++.|++++++|||||.||+.|+|||+|||||++||++.+|++.+||+|||+|++++|+|+||+|+||++|+|+|
T Consensus        59 f~s~~kve~~~ver~~~qylY~dgd~~~FMD~etyeQ~~l~~~~lgd~~~~l~e~~~v~v~~~~g~~i~v~lP~~V~l~V  138 (191)
T 3a5z_B           59 FKSTDSAEGADVVDMNLTYLYNDGEFWHFMNNETFEQLSADAKAIGDNAKWLLDQAECIVTLWNGQPISVTPPNFVELEI  138 (191)
T ss_dssp             EETTCEEEECCEEEECCEEEEECSSCEEEECTTTCCEEEECHHHHCTTTTTCCSSEECEEEEETTEEEEEECCSCCCCCC
T ss_pred             ECCCCEEEeeEEEEEEEEEEEeCCCEEEEeeCCCCeEEEccHHHhhhHHhhcCCCCEEEEEEECCEEEEEECCCEEEEEE
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeecC
Q 032740           83 KEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRAK  135 (135)
Q Consensus        83 ~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~k  135 (135)
                      ++|+|++|||||++++|||+||||++|+||+||++||+|+||||+|+|++|||
T Consensus       139 ~~tep~~kGdta~~~~KpA~letG~~v~VP~fi~~Gd~I~VdT~~g~Y~~R~~  191 (191)
T 3a5z_B          139 VDTDPGLKGDTAGTGGKPATLSTGAVVKVPLFVQIGEVIKVDTRSGEYVSRVK  191 (191)
T ss_dssp             C----------------------------------------------------
T ss_pred             EEcCCCCcccccCCCCccEEEeCCCEEEeCCcEeCCCEEEEECCCCeEeeccC
Confidence            99999999999999999999999999999999999999999999999999996

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5

Probab=99.86  E-value=4.8e-22  Score=147.74  Aligned_cols=71  Identities=15%  Similarity=0.097  Sum_probs=68.2

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhh-hccccccccCCCEEEEEEECCEEEEEe
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDV-FGKAGAYLQEGMKVWLQLYDGRALSGS   73 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~-~g~~~~fL~eg~~v~v~~~~~~~i~v~   73 (135)
                      |+||++++.|+++++++||||.||+.|+|||++||||++|+++. +|++.+||+|||.|++++|+|++.-+.
T Consensus        62 f~s~~kve~~~ve~~~~qylY~dg~~~~fMD~etyeq~~l~~~~~~gd~~~~l~e~~~v~v~~~~g~~~~~~  133 (136)
T 1bkb_A           62 LPVDAQVEVPIIEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVEVWQILDRYKIIR  133 (136)
T ss_dssp             EETTSEEEECCCEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEEEEEETTEEEEEE
T ss_pred             EcCCCEeeeceEEEEEEEEEEecCCEEEEEeCCCCeEEEeccccchhHHHhhCCCCCEEEEEEECCEEEEEE
Confidence            89999999999999999999999999999999999999999999 999999999999999999999887543

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5

Probab=99.84  E-value=7.4e-21  Score=141.88  Aligned_cols=68  Identities=22%  Similarity=0.199  Sum_probs=66.0

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEe--ChhhhccccccccCCCEEEEEEECCEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEV--PLDVFGKAGAYLQEGMKVWLQLYDGRAL   70 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i--~~~~~g~~~~fL~eg~~v~v~~~~~~~i   70 (135)
                      ||||++++.|+++++++||||.||+.|+|||++||||++|  |++.+|++.+||+|||.|+|+++.|+..
T Consensus        60 f~s~~~ve~~~ve~~~~qylY~dg~~~~fMD~etyeq~~l~~~~~~lgd~~~~l~e~~~V~v~~~~G~~~  129 (138)
T 1iz6_A           60 KPTSAEVDVPIIDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGRIK  129 (138)
T ss_dssp             EETTSEEEEECCEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTEEE
T ss_pred             ecCCCEEeeceEEEEEEEEEEeCCCEEEEEeCCCCceEEeeCCHHHHHHHHHhCCCCCEEEEEEECCcEE
Confidence            8999999999999999999999999999999999999999  9999999999999999999999999865

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A

Probab=99.80  E-value=1.5e-19  Score=134.48  Aligned_cols=67  Identities=16%  Similarity=0.137  Sum_probs=63.9

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEE
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG   72 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v   72 (135)
                      |+||++++.|.++++++||||.||+.|+|||++||||++|+++  |++.+ |+|||.|++++|.|++.-+
T Consensus        64 f~s~~~ve~~~ve~~~~qyly~dg~~~~fMD~etyeq~~l~~~--gd~~~-l~e~~~v~v~~~~G~~~i~  130 (136)
T 2eif_A           64 APTSSKVEVPIIDRRKGQVLAIMGDMVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQYKIT  130 (136)
T ss_dssp             EETTSEEEEECEEEEEEEEEEEETTEEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTEEEEE
T ss_pred             ecCCCEeccccEeeeEEEEEEecCCEEEEEeCCCceEEEecCC--Cchhh-CCCCCEEEEEEECCEEEEE
Confidence            8999999999999999999999999999999999999999999  99999 9999999999999987633

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}

Probab=99.80  E-value=2.3e-20  Score=139.17  Aligned_cols=64  Identities=8%  Similarity=0.068  Sum_probs=62.1

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEeCCCceeEE--eChhhhcccc-ccccCCCEEEEEEEC
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIESETFEQLE--VPLDVFGKAG-AYLQEGMKVWLQLYD   66 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd~etyeQ~~--i~~~~~g~~~-~fL~eg~~v~v~~~~   66 (135)
                      |+||++++.|+++++++||||.||+.|+|||++||||+.  +|++.+|+++ +||+||++|.|.+|.
T Consensus        60 f~s~~kve~~~v~~~~~qyly~dg~~~~fMD~etyeq~~l~l~~~~lgd~~~~~l~eg~~v~V~~~~  126 (138)
T 3cpf_A           60 CPSTHNMDVPNIKRNDFQLIGIQDGYLSLLQDSGEVREDLRLPEGDLGKEIEQKYDCGEEILITVLS  126 (138)
T ss_dssp             EETTSEEEEECCEEEEEEEEEEETTEEEEECTTSCEECCSBCCSHHHHHHHHHHHHHTCCCEEEEEE
T ss_pred             eCCCCEEEeeEEEEEEEEEEEecCCEEEEEcCCCCeEeeecCCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence            799999999999999999999999999999999999999  7999999999 999999999999994

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A

Probab=99.71  E-value=6.3e-18  Score=130.67  Aligned_cols=64  Identities=13%  Similarity=0.201  Sum_probs=61.5

Q ss_pred             cccccceEeeEEEEeeEEEEEccCC-------eEEEEeCCCceeEEe--Chh-hhccc-cccccCCCEEEEEEEC
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTEND-------TAFVIESETFEQLEV--PLD-VFGKA-GAYLQEGMKVWLQLYD   66 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd-------~~~FMd~etyeQ~~i--~~~-~~g~~-~~fL~eg~~v~v~~~~   66 (135)
                      |+|+++++.+.|++++|||||.||+       .|+|||+++|||+.|  |++ .+|++ .+||+||+.|.|.+|.
T Consensus        84 f~s~~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~i~~~l~eg~~v~V~~~~  158 (174)
T 1x6o_A           84 APSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQIKEQFDSGKDVLVVVVS  158 (174)
T ss_dssp             EETTSEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             eCCCCEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEEEeeCCchhhHHHHHHHHhhCCCEEEEEEEe
Confidence            7999999999999999999999999       999999999999999  788 89999 8999999999999994

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}

Probab=99.67  E-value=4e-18  Score=131.05  Aligned_cols=64  Identities=11%  Similarity=0.179  Sum_probs=61.7

Q ss_pred             cccccceEeeEEEEeeEEEEEccCCeEEEEe--CCCceeEEeChhhhcccc-ccccCCCEEEEEEEC
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTENDTAFVIE--SETFEQLEVPLDVFGKAG-AYLQEGMKVWLQLYD   66 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dgd~~~FMd--~etyeQ~~i~~~~~g~~~-~fL~eg~~v~v~~~~   66 (135)
                      |+|+++++.+.|+++++||||.||+.|+|||  .+||||+.||++.+|+++ .||+||++|.|.+|+
T Consensus        84 f~s~~kve~~~ver~~~QyLY~dg~~~~FMD~~~etyeqi~l~~~~lgd~i~~~l~eg~~v~V~~~~  150 (167)
T 3er0_A           84 SPSTHNMEVPVVKRNEYQLLDIDDGFLSLMNMDGDTKDDVKAPEGELGDSLQTAFDEGKDLMVTIIS  150 (167)
T ss_dssp             EESSSEEEECCCCEEEEECCCCTTTTCCCCCSSSCCCSCCCCCCSSHHHHHHHTTSSCCCCEEEEEE
T ss_pred             EcCCCccccceEEEeeEEEEEEcCCEEEEEeCCCCeeEEEEcCHHHHHHHHHHHhhCCCEEEEEEEh
Confidence            7999999999999999999999999999999  899999999999999998 789999999999994

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}

Probab=99.61  E-value=5e-16  Score=119.39  Aligned_cols=64  Identities=8%  Similarity=0.046  Sum_probs=58.5

Q ss_pred             cccccceEeeEEEEeeEEEEEccC-CeEEEEeCCCceeE--EeChh-hhcccc-ccccCCCEEEEEEEC
Q 032740            3 INAIYFAAGVFVEDKSFTCLYTEN-DTAFVIESETFEQL--EVPLD-VFGKAG-AYLQEGMKVWLQLYD   66 (135)
Q Consensus         3 ~~~~~~~e~~~i~~~~~~ylY~dg-d~~~FMd~etyeQ~--~i~~~-~~g~~~-~fL~eg~~v~v~~~~   66 (135)
                      |+|+++++.+.|+++++||||.|+ +.|+|||++||||+  .||.+ .|++++ .||++|++|.|.+|+
T Consensus        82 f~s~~kve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i~~~l~eG~~v~V~v~~  150 (167)
T 3hks_A           82 VPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQMRLGFDEGKDIVVSVMS  150 (167)
T ss_dssp             EETTSEEEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred             EcCCCEEEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHHHHHhhCCCEEEEEEEe
Confidence            799999999999999999999965 69999999999995  66777 899887 899999999999994

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	135
d1ueba3	58	b.40.4.5 (A:127-184) Elongation factor P middle an	1e-14
d1ueba2	63	b.40.4.5 (A:64-126) Elongation factor P middle and	6e-12

>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 58

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 61.5 bits (150), Expect = 1e-14
 Identities = 18/57 (31%), Positives = 30/57 (52%)

Query: 78  VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA 134
           V   + +     +G TV+   + A L+ G  V VP ++E GE I ++ +   Y+GRA
Sbjct: 2   VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA 58

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 55.0 bits (133), Expect = 6e-12
 Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 13 FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSG 72
          +VE +    LY E +    ++ ET+EQ  VP      A  + +EGM     +Y+G+ +  
Sbjct: 1  YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKV 59

Query: 73 SIP 75
          + P
Sbjct: 60 TPP 62

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	135
d1ueba3	58	Elongation factor P middle and C-terminal domains	99.97
d1ueba2	63	Elongation factor P middle and C-terminal domains	99.94
d2eifa2	59	C-terminal domain of eukaryotic initiation transla	97.78
d1bkba2	65	C-terminal domain of eukaryotic initiation transla	97.76
d1iz6a2	67	C-terminal domain of eukaryotic initiation transla	97.48

>d1ueba3 b.40.4.5 (A:127-184) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.97  E-value=4.9e-31  Score=170.40  Aligned_cols=57  Identities=32%  Similarity=0.547  Sum_probs=56.3

Q ss_pred             EEEEEEEeCCCCCCccCCCCceeEEEecCcEEEcccceecCCEEEEeCCCCeeEeec
Q 032740           78 VACTIKEIHASTKGPTVTPRYRRALLDNGVTVMVPSYLEIGEEIFINPQDDSYIGRA  134 (135)
Q Consensus        78 V~l~V~et~p~~kGdTat~~~K~A~LetG~~i~VP~FI~~Gd~I~VdT~~g~Y~~R~  134 (135)
                      |+|+|++|+|++||||+++++|||+|+||++|+||+||++||+|+|||++|+|++||
T Consensus         2 V~l~V~etep~vKG~Ta~~~~K~a~letG~~i~VP~FI~~Gd~I~VdT~~g~Y~~RA   58 (58)
T d1ueba3           2 VELKVVDTPPGVRGDTVSGGSKPATLETGAVVQVPLFVEPGEVIKVDTRTGEYVGRA   58 (58)
T ss_dssp             EEEEEEECCSSSCCSSSSCSEEEEEETTSCEEEEETTCCTTCEEEEETTTTEEEEEC
T ss_pred             EEEEEEECCCCcccccccCCcceEEEcCCCEEEcCCcccCCCEEEEECCCCeEeccC
Confidence            799999999999999999999999999999999999999999999999999999997

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.94  E-value=2.2e-27  Score=155.18  Aligned_cols=63  Identities=29%  Similarity=0.580  Sum_probs=60.8

Q ss_pred             EEEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCEEEEEeCCC
Q 032740           13 FVEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGRALSGSIPK   76 (135)
Q Consensus        13 ~i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~~i~v~lP~   76 (135)
                      .|++|++||||.||+.|||||++||||++|+++.+|++ +||+|||.|.|.+|+|+||+|+||+
T Consensus         1 ~ve~~~~qyLY~dgd~~~FMd~etyEQi~v~~~~i~~~-~~L~eg~~~~v~~~~~~~i~i~lPT   63 (63)
T d1ueba2           1 YVETRELQYLYPEGEEMVFMDLETYEQFAVPRSRVVGA-EFFKEGMTALGDMYEGQPIKVTPPT   63 (63)
T ss_dssp             CEEEEEEEEEEEETTEEEEEETTTCCEEEEEGGGBTTG-GGCCTTCEEEEEEETTEEEEEECCS
T ss_pred             CccceeEEEEEeCCCeEEEEeCCCccEEEcCHHHcChh-ccccCCCEEEEEEECCEEEEEECCC
Confidence            37999999999999999999999999999999999986 8999999999999999999999995

>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.78  E-value=6.7e-05  Score=47.01  Aligned_cols=52  Identities=21%  Similarity=0.299  Sum_probs=41.6

Q ss_pred             EEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhccccccccCCCEEEEEEECCE
Q 032740           14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFGKAGAYLQEGMKVWLQLYDGR   68 (135)
Q Consensus        14 i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g~~~~fL~eg~~v~v~~~~~~   68 (135)
                      |+|+..|-+-..|+..++||.||||-+++|..  ++..+ |++|.+|.-.-.-|+
T Consensus         1 IeKk~aQVlsi~G~~vq~MD~etyetf~l~ip--e~~~~-l~~G~eVeY~e~mGr   52 (59)
T d2eifa2           1 IDRRKGQVLAIMGDMVQIMDLQTYETLELPIP--EGIEG-LEPGGEVEYIEAVGQ   52 (59)
T ss_dssp             EEEEEEEEEEEETTEEEEEETTTCCEEEEECC--SCCTT-CSTTCEEEEEEETTE
T ss_pred             CccceeEEEEEcCCeEEEeeCCcceeEEEeCc--chhcc-CCCCCEEEEeeccCc
Confidence            68999999999999999999999999999864  22223 999998774433454

>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=97.76  E-value=5e-05  Score=48.46  Aligned_cols=48  Identities=21%  Similarity=0.334  Sum_probs=41.0

Q ss_pred             EEEeeEEEEEccCCeEEEEeCCCceeEEeChhhhc-cccccccCCCEEE
Q 032740           14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDVFG-KAGAYLQEGMKVW   61 (135)
Q Consensus        14 i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~~g-~~~~fL~eg~~v~   61 (135)
                      |+++..|-|-..|+..++||+||||.++||...+. +...=|++|.+|.
T Consensus         2 IeK~~aQVlsi~Gd~vq~MD~etyetfelpm~~~~ee~~~~l~~G~eVe   50 (65)
T d1bkba2           2 IEKFTAQILSVSGDVIQLMDMRDYKTIEVPMKYVEEEAKGRLAPGAEVE   50 (65)
T ss_dssp             CEEEEEEEEEECSSEEEEEETTTCCEEEEEGGGBCHHHHTTCCTTCEEE
T ss_pred             ccccceeEEEEcCCeEEEeecCcceeEEecCCCCChHHHhccCCCCEEE
Confidence            78999999999999999999999999999865443 3445689999777

>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.48  E-value=0.00025  Score=45.31  Aligned_cols=55  Identities=29%  Similarity=0.448  Sum_probs=44.1

Q ss_pred             EEEeeEEEEEccCCeEEEEeCCCceeEEeChhh-h-ccccccccCCCEEEEEEECCE
Q 032740           14 VEDKSFTCLYTENDTAFVIESETFEQLEVPLDV-F-GKAGAYLQEGMKVWLQLYDGR   68 (135)
Q Consensus        14 i~~~~~~ylY~dgd~~~FMd~etyeQ~~i~~~~-~-g~~~~fL~eg~~v~v~~~~~~   68 (135)
                      |+++..|-|-..|+...+||++|||-+++|.+. + ++...=|++|.+|.-.-.-|+
T Consensus         1 IeKk~aQVlsi~Gd~vQ~MD~etyeTfelpi~~~v~ee~~~~l~~G~eVeYwe~mGr   57 (67)
T d1iz6a2           1 IDKKTAQVIAITPDTVQIMDMETYETFEVPIDTGVADEIRDQLKEGINVEYWETLGR   57 (67)
T ss_dssp             CEEEEEEEEEECSSEEEEECTTTCCEEEEEHHHHBCGGGTTTCCTTCEEEEEEETTE
T ss_pred             CccceeEEEEEcCCeEEEeecCCceeEEEecCCCccHHHHhccCCCCEEEEEeecCc
Confidence            589999999999999999999999999998643 3 455567899997774333454