Citrus Sinensis ID: 032796

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccEEEEEEcHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHcccEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEEccccEEccccccEEEcccccccccccccHHHEccccccccccccccccHccccccccccEEEEEccHHHHHHHHHHcHHHHHHHHHcccHHHHHHHHHHHHHcccEEEccccEEEccccc
Coil and Loop (DISEMBL)
MAVPLLSKKIVKKRLKKfkrpqsdrkisvkenwrrpkgidsrvrrkfkgctlmpnigygsdkktrhylpngfKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE
Flexible Loop (DISEMBL)
mavpllskkivkkrlkkfkrpqsdrkisvkenwrrpkgidsrvrrkfkgctlmpnigygsdkktrhYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVEraaqldivvtnklarlrsqede
Low Complexity Region (SEG)
MAVPllskkivkkrlkkfkRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE
Disordered region (IsUnstruct)
*****************************************RVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKL*********
Disordered Region (DISOPRED)
******S****KKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK**********
Disordered Region (DISEMBL)
MAVPLLSKKIVKKRL***********ISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE
Disordered Region (DISPRO)
****LLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLR*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
P49211	133	60S ribosomal protein L32	yes	no	1.0	1.0	0.872	7e-66
Q9FHG2	133	60S ribosomal protein L32	yes	no	1.0	1.0	0.849	5e-65
P62912	135	60S ribosomal protein L32	yes	no	0.977	0.962	0.692	2e-48
Q6QAT0	135	60S ribosomal protein L32	yes	no	0.977	0.962	0.692	2e-48
P62911	135	60S ribosomal protein L32	yes	no	0.977	0.962	0.692	2e-48
Q76KA3	135	60S ribosomal protein L32	N/A	no	0.977	0.962	0.692	2e-48
P62910	135	60S ribosomal protein L32	yes	no	0.977	0.962	0.692	2e-48
E2RKA8	135	60S ribosomal protein L32	yes	no	0.977	0.962	0.692	2e-48
Q3SZQ6	135	60S ribosomal protein L32	yes	no	0.977	0.962	0.684	3e-48
Q962T1	134	60S ribosomal protein L32	N/A	no	1.0	0.992	0.686	1e-47

>sp|P49211|RL321_ARATH 60S ribosomal protein L32-1 OS=Arabidopsis thaliana GN=RPL32A PE=2 SV=2

 Score =  248 bits (634), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 116/133 (87%), Positives = 127/133 (95%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KK+VKKR  KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLD+VV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FHG2|RL322_ARATH 60S ribosomal protein L32-2 OS=Arabidopsis thaliana GN=RPL32B PE=2 SV=1

 Score =  245 bits (626), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 113/133 (84%), Positives = 126/133 (94%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KK+VKKR  KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKF+VHNT ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLD+VV
Sbjct: 61  DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           +NKL RLRSQEDE
Sbjct: 121 SNKLGRLRSQEDE 133

Arabidopsis thaliana (taxid: 3702)

>sp|P62912|RL32_RAT 60S ribosomal protein L32 OS=Rattus norvegicus GN=Rpl32 PE=1 SV=2

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Rattus norvegicus (taxid: 10116)

>sp|Q6QAT0|RL32_PIG 60S ribosomal protein L32 OS=Sus scrofa GN=RPL32 PE=2 SV=3

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Sus scrofa (taxid: 9823)

>sp|P62911|RL32_MOUSE 60S ribosomal protein L32 OS=Mus musculus GN=Rpl32 PE=2 SV=2

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Mus musculus (taxid: 10090)

>sp|Q76KA3|RL32_MACFA 60S ribosomal protein L32 OS=Macaca fascicularis GN=RPL32 PE=2 SV=3

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Macaca fascicularis (taxid: 9541)

>sp|P62910|RL32_HUMAN 60S ribosomal protein L32 OS=Homo sapiens GN=RPL32 PE=1 SV=2

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Homo sapiens (taxid: 9606)

>sp|E2RKA8|RL32_CANFA 60S ribosomal protein L32 OS=Canis familiaris GN=RPL32 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/130 (69%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Canis familiaris (taxid: 9615)

>sp|Q3SZQ6|RL32_BOVIN 60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3

 Score =  189 bits (481), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 89/130 (68%), Positives = 111/130 (85%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KK
Sbjct: 6   PLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKK 65

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I +TN 
Sbjct: 66  TKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNP 125

Query: 124 LARLRSQEDE 133
            ARLRS+E+E
Sbjct: 126 NARLRSEENE 135

Bos taurus (taxid: 9913)

>sp|Q962T1|RL32_SPOFR 60S ribosomal protein L32 OS=Spodoptera frugiperda GN=RpL32 PE=2 SV=1

 Score =  187 bits (475), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 92/134 (68%), Positives = 108/134 (80%), Gaps = 1/134 (0%)

Query: 1   MAV-PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYG 59
           MA+ P+    IVKKR K+F R QSDR   +K NWR+P+GID+RVRR+FKG  LMPNIGYG
Sbjct: 1   MAIRPVYRPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 60

Query: 60  SDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIV 119
           S+KKTRH LPNGF+K +VHN +ELE+LMM NR YCAEIAH VS++KRK IVERA QL I 
Sbjct: 61  SNKKTRHMLPNGFRKVLVHNVRELEILMMQNRKYCAEIAHGVSSKKRKTIVERAQQLSIR 120

Query: 120 VTNKLARLRSQEDE 133
           VTN  ARLRSQE+E
Sbjct: 121 VTNSAARLRSQENE 134

Spodoptera frugiperda (taxid: 7108)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
255585616	133	60S ribosomal protein L32, putative [Ric	1.0	1.0	0.954	2e-69
449459332	133	PREDICTED: 60S ribosomal protein L32-1-l	1.0	1.0	0.947	7e-69
449433704	133	PREDICTED: 60S ribosomal protein L32-1-l	1.0	1.0	0.939	2e-68
315113269	133	Chain h, Localization Of The Large Subun	1.0	1.0	0.902	1e-64
357518857	133	60S ribosomal protein L32 [Medicago trun	1.0	1.0	0.894	3e-64
297800254	133	60S ribosomal protein L32 [Arabidopsis l	1.0	1.0	0.879	3e-64
115479981	133	Os09g0502000 [Oryza sativa Japonica Grou	1.0	1.0	0.894	3e-64
222641863	208	hypothetical protein OsJ_29904 [Oryza sa	1.0	0.639	0.894	4e-64
297794615	133	60S ribosomal protein L32 [Arabidopsis l	1.0	1.0	0.879	4e-64
297727127	133	Os09g0501100 [Oryza sativa Japonica Grou	1.0	1.0	0.894	4e-64

>gi|255585616|ref|XP_002533495.1| 60S ribosomal protein L32, putative [Ricinus communis] gi|223526639|gb|EEF28882.1| 60S ribosomal protein L32, putative [Ricinus communis]

 Score =  266 bits (680), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 127/133 (95%), Positives = 131/133 (98%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLLSKKIVKKR+K+FKRPQSDRKISVK NWRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 1   MAVPLLSKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVVHN +ELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLD+VV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVQELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449459332|ref|XP_004147400.1| PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus] gi|449500584|ref|XP_004161138.1| PREDICTED: 60S ribosomal protein L32-1-like isoform 1 [Cucumis sativus] gi|449500587|ref|XP_004161139.1| PREDICTED: 60S ribosomal protein L32-1-like isoform 2 [Cucumis sativus] gi|449500590|ref|XP_004161140.1| PREDICTED: 60S ribosomal protein L32-1-like isoform 3 [Cucumis sativus] gi|449500594|ref|XP_004161141.1| PREDICTED: 60S ribosomal protein L32-1-like isoform 4 [Cucumis sativus]

 Score =  264 bits (675), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 126/133 (94%), Positives = 130/133 (97%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLLSKKIVKKR +KFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLSKKIVKKRTQKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVVHN  ELELLMMHNRTYCAEIAHDVST+KRKEIVERAAQLD+VV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVNELELLMMHNRTYCAEIAHDVSTKKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433704|ref|XP_004134637.1| PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus] gi|449527225|ref|XP_004170613.1| PREDICTED: 60S ribosomal protein L32-1-like [Cucumis sativus]

 Score =  263 bits (672), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 125/133 (93%), Positives = 130/133 (97%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KKIVKKR+K+FKRPQSDRKISVK NWRRPKGIDSRVRRKFKGCTLMPNIGYG+
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPQSDRKISVKTNWRRPKGIDSRVRRKFKGCTLMPNIGYGT 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVVHN  ELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLD+VV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNVTELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDVVV 120

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|315113269|pdb|3IZR|HH Chain h, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome gi|76057835|emb|CAH55765.1| ribosomal L32 [Oryza sativa Indica Group] gi|218202405|gb|EEC84832.1| hypothetical protein OsI_31922 [Oryza sativa Indica Group]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 120/133 (90%), Positives = 126/133 (94%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KKIVKKR+K+FKRP SDR I +K +WRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPN FKKFVVHN  ELELLMMHNRTYCAEIAH+VSTRKRKEIVERAAQLDIVV
Sbjct: 61  DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 120

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357518857|ref|XP_003629717.1| 60S ribosomal protein L32 [Medicago truncatula] gi|217075658|gb|ACJ86189.1| unknown [Medicago truncatula] gi|355523739|gb|AET04193.1| 60S ribosomal protein L32 [Medicago truncatula] gi|388518931|gb|AFK47527.1| unknown [Medicago truncatula]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 126/133 (94%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KKIVKKR+K FKRPQSDRKI VKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 1   MAVPLLTKKIVKKRVKHFKRPQSDRKICVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVV N  +LELLMMHNRTYCAEIAH+VST KRK+IVERAAQLD+V+
Sbjct: 61  DKKTRHYLPNGFKKFVVCNVNDLELLMMHNRTYCAEIAHNVSTSKRKDIVERAAQLDVVL 120

Query: 121 TNKLARLRSQEDE 133
           TNK ARLRSQEDE
Sbjct: 121 TNKTARLRSQEDE 133

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297800254|ref|XP_002868011.1| 60S ribosomal protein L32 [Arabidopsis lyrata subsp. lyrata] gi|297313847|gb|EFH44270.1| 60S ribosomal protein L32 [Arabidopsis lyrata subsp. lyrata]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 117/133 (87%), Positives = 127/133 (95%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KK+VKKR  KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLDIVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKSIVERASQLDIVV 120

Query: 121 TNKLARLRSQEDE 133
           TN+LARLRSQEDE
Sbjct: 121 TNRLARLRSQEDE 133

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115479981|ref|NP_001063584.1| Os09g0502000 [Oryza sativa Japonica Group] gi|113631817|dbj|BAF25498.1| Os09g0502000 [Oryza sativa Japonica Group] gi|125564262|gb|EAZ09642.1| hypothetical protein OsI_31926 [Oryza sativa Indica Group] gi|125606230|gb|EAZ45266.1| hypothetical protein OsJ_29908 [Oryza sativa Japonica Group] gi|215767820|dbj|BAH00049.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 126/133 (94%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KKIVKKR+K+FKRP SDR I +K +WRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPN FKKFVVHN  ELELLMMHNRTYCAEIAH+VST+KRKEIVERAAQLDIVV
Sbjct: 61  DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTKKRKEIVERAAQLDIVV 120

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222641863|gb|EEE69995.1| hypothetical protein OsJ_29904 [Oryza sativa Japonica Group]

 Score =  249 bits (635), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 125/133 (93%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           M VPLL+KKIVKKR+K+FKRP SDR I +K +WRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 76  MVVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 135

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPN FKKFVVHN  ELELLMMHNRTYCAEIAH+VSTRKRKEIVERAAQLDIVV
Sbjct: 136 DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 195

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 196 TNKLARLRSQEDE 208

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297794615|ref|XP_002865192.1| 60S ribosomal protein L32 [Arabidopsis lyrata subsp. lyrata] gi|297311027|gb|EFH41451.1| 60S ribosomal protein L32 [Arabidopsis lyrata subsp. lyrata]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 117/133 (87%), Positives = 127/133 (95%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVPLL+KK+VKKR  KF RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGS
Sbjct: 1   MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLDIVV
Sbjct: 61  DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDIVV 120

Query: 121 TNKLARLRSQEDE 133
           +NKLARLRSQEDE
Sbjct: 121 SNKLARLRSQEDE 133

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297727127|ref|NP_001175927.1| Os09g0501100 [Oryza sativa Japonica Group] gi|215686599|dbj|BAG88852.1| unnamed protein product [Oryza sativa Japonica Group] gi|215708771|dbj|BAG94040.1| unnamed protein product [Oryza sativa Japonica Group] gi|255679030|dbj|BAH94655.1| Os09g0501100 [Oryza sativa Japonica Group]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 119/133 (89%), Positives = 125/133 (93%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           M VPLL+KKIVKKR+K+FKRP SDR I +K +WRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 1   MVVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPN FKKFVVHN  ELELLMMHNRTYCAEIAH+VSTRKRKEIVERAAQLDIVV
Sbjct: 61  DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 120

Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2117696	133	AT4G18100 [Arabidopsis thalian	1.0	1.0	0.796	7e-54
TAIR|locus:2151471	133	AT5G46430 [Arabidopsis thalian	1.0	1.0	0.774	3.8e-53
UNIPROTKB|E2RKA8	135	RPL32 "60S ribosomal protein L	0.857	0.844	0.692	6.8e-40
UNIPROTKB|P62910	135	RPL32 "60S ribosomal protein L	0.857	0.844	0.692	6.8e-40
UNIPROTKB|Q6QAT0	135	RPL32 "60S ribosomal protein L	0.857	0.844	0.692	6.8e-40
MGI|MGI:98038	135	Rpl32 "ribosomal protein L32"	0.857	0.844	0.692	6.8e-40
RGD|621203	135	Rpl32 "ribosomal protein L32"	0.857	0.844	0.692	6.8e-40
UNIPROTKB|P62912	135	Rpl32 "60S ribosomal protein L	0.857	0.844	0.692	6.8e-40
UNIPROTKB|Q3SZQ6	135	RPL32 "60S ribosomal protein L	0.857	0.844	0.684	8.7e-40
ZFIN|ZDB-GENE-060331-105	135	rpl32 "ribosomal protein L32"	0.857	0.844	0.684	2.3e-39

TAIR|locus:2117696 AT4G18100 [Arabidopsis thaliana (taxid:3702)]

 Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
 Identities = 106/133 (79%), Positives = 115/133 (86%)

Query:     1 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
             MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGS
Sbjct:     1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query:    61 DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
             DKKTRHYLPNGFKKFVVHNT ELELLMMHNRTYCAEIAH+VST+KRK IVERA+QLD+VV
Sbjct:    61 DKKTRHYLPNGFKKFVVHNTSELELLMMHNRTYCAEIAHNVSTKKRKAIVERASQLDVVV 120

Query:   121 TNKLARLRSQEDE 133
             TN+LARLRSQEDE
Sbjct:   121 TNRLARLRSQEDE 133

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0005730 "nucleolus" evidence=IDA

GO:0022626 "cytosolic ribosome" evidence=IDA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=RCA

TAIR|locus:2151471 AT5G46430 [Arabidopsis thaliana (taxid:3702)]

 Score = 550 (198.7 bits), Expect = 3.8e-53, P = 3.8e-53
 Identities = 103/133 (77%), Positives = 114/133 (85%)

Query:     1 MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
             MAVP               RPQSDR+I+VKE+WRRPKGIDSRVRRKFKG TLMPN+GYGS
Sbjct:     1 MAVPLLTKKVVKKRSAKFIRPQSDRRITVKESWRRPKGIDSRVRRKFKGVTLMPNVGYGS 60

Query:    61 DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
             DKKTRHYLPNGFKKF+VHNT ELELLMMHNRTYCAEIAH++ST+KRK IVERA+QLD+VV
Sbjct:    61 DKKTRHYLPNGFKKFIVHNTSELELLMMHNRTYCAEIAHNISTKKRKAIVERASQLDVVV 120

Query:   121 TNKLARLRSQEDE 133
             +NKL RLRSQEDE
Sbjct:   121 SNKLGRLRSQEDE 133

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

UNIPROTKB|E2RKA8 RPL32 "60S ribosomal protein L32" [Canis lupus familiaris (taxid:9615)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

UNIPROTKB|P62910 RPL32 "60S ribosomal protein L32" [Homo sapiens (taxid:9606)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0006412 "translation" evidence=NAS;TAS

GO:0003735 "structural constituent of ribosome" evidence=NAS

GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA

GO:0000184 "nuclear-transcribed mRNA catabolic process, nonsense-mediated decay" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0006414 "translational elongation" evidence=TAS

GO:0006415 "translational termination" evidence=TAS

GO:0006614 "SRP-dependent cotranslational protein targeting to membrane" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0016032 "viral reproduction" evidence=TAS

GO:0016070 "RNA metabolic process" evidence=TAS

GO:0016071 "mRNA metabolic process" evidence=TAS

GO:0019058 "viral infectious cycle" evidence=TAS

GO:0019083 "viral transcription" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|Q6QAT0 RPL32 "60S ribosomal protein L32" [Sus scrofa (taxid:9823)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

MGI|MGI:98038 Rpl32 "ribosomal protein L32" [Mus musculus (taxid:10090)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IC

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IC

GO:0022625 "cytosolic large ribosomal subunit" evidence=ISO;IDA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

RGD|621203 Rpl32 "ribosomal protein L32" [Rattus norvegicus (taxid:10116)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA;ISO

UNIPROTKB|P62912 Rpl32 "60S ribosomal protein L32" [Rattus norvegicus (taxid:10116)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 79/114 (69%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

UNIPROTKB|Q3SZQ6 RPL32 "60S ribosomal protein L32" [Bos taurus (taxid:9913)]

 Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
 Identities = 78/114 (68%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct:    22 RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I +TN  ARLRS+E+E
Sbjct:    82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRITNPNARLRSEENE 135

GO:0005840 "ribosome" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

ZFIN|ZDB-GENE-060331-105 rpl32 "ribosomal protein L32" [Danio rerio (taxid:7955)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 78/114 (68%), Positives = 99/114 (86%)

Query:    20 RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
             R QSDR + ++ NWR+P+GID+RVRR+FKG  LMPNIGYGS++KT+H LP+GFKKF+VHN
Sbjct:    22 RHQSDRYVKIRANWRKPRGIDNRVRRRFKGQMLMPNIGYGSNRKTKHMLPSGFKKFLVHN 81

Query:    80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
              KELE+LMM N+++CAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct:    82 VKELEVLMMSNKSHCAEIAHNVSSKNRKLIVERAAQLAIKVTNPNARLRSEENE 135

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9UX90	RL32_SULSO	No assigned EC number	0.3277	0.8496	0.8188	yes	no
P84312	RL32_DROBF	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P84313	RL32_DROMD	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P84311	RL32_DROSU	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
Q94460	RL32_DROAC	No assigned EC number	0.6692	0.9774	0.9701	N/A	no
P61128	RL32_DROSI	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P62910	RL32_HUMAN	No assigned EC number	0.6923	0.9774	0.9629	yes	no
C3NEG0	RL32_SULIY	No assigned EC number	0.3083	0.8571	0.8260	yes	no
P04359	RL32_DROME	No assigned EC number	0.6615	0.9774	0.9701	yes	no
Q3SZQ6	RL32_BOVIN	No assigned EC number	0.6846	0.9774	0.9629	yes	no
P62911	RL32_MOUSE	No assigned EC number	0.6923	0.9774	0.9629	yes	no
P62912	RL32_RAT	No assigned EC number	0.6923	0.9774	0.9629	yes	no
P61127	RL32_DROYA	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
Q751I7	RL32_ASHGO	No assigned EC number	0.5669	0.9548	0.9694	yes	no
Q962T1	RL32_SPOFR	No assigned EC number	0.6865	1.0	0.9925	N/A	no
P84314	RL32_DROGU	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P84323	RL32_DROPS	No assigned EC number	0.6615	0.9774	0.9701	yes	no
P84327	RL32_DROPE	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P84326	RL32_DROMI	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P84325	RL32_DROAZ	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
P84324	RL32_DROAI	No assigned EC number	0.6615	0.9774	0.9701	N/A	no
E2RKA8	RL32_CANFA	No assigned EC number	0.6923	0.9774	0.9629	yes	no
O42935	RL32B_SCHPO	No assigned EC number	0.6065	0.9172	0.9606	yes	no
Q76KA3	RL32_MACFA	No assigned EC number	0.6923	0.9774	0.9629	N/A	no
Q90YT6	RL32_ICTPU	No assigned EC number	0.6846	0.9774	0.9629	N/A	no
Q6FS03	RL32_CANGA	No assigned EC number	0.5354	0.9548	0.9694	yes	no
Q8SS18	RL32_ENCCU	No assigned EC number	0.4769	0.9774	0.9352	yes	no
P49211	RL321_ARATH	No assigned EC number	0.8721	1.0	1.0	yes	no
Q6QAT0	RL32_PIG	No assigned EC number	0.6923	0.9774	0.9629	yes	no
Q9FHG2	RL322_ARATH	No assigned EC number	0.8496	1.0	1.0	yes	no
Q8TW13	RL32_METKA	No assigned EC number	0.4464	0.8270	0.8396	yes	no
O94008	RL32_CANAX	No assigned EC number	0.5354	0.9548	0.9694	N/A	no
Q55AB5	RL32_DICDI	No assigned EC number	0.5603	0.8721	0.8721	yes	no
P38061	RL32_YEAST	No assigned EC number	0.5714	0.8947	0.9153	yes	no
P79015	RL32A_SCHPO	No assigned EC number	0.6065	0.9172	0.9606	yes	no
Q8WRF3	RL32_APIME	No assigned EC number	0.6791	1.0	0.9925	yes	no
Q7RXY1	RL32_NEUCR	No assigned EC number	0.6033	0.9097	0.9236	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh2_kg.7__2491__AT4G18100.1	annotation not avaliable (133 aa)
		(Arabidopsis lyrata)
Predicted Functional Partners:
	fgenesh2_kg.6__3482__AT4G02230.1	annotation not avaliable (208 aa)	•			•	•	•	•		0.932
	fgenesh2_kg.3__1844__AT3G16780.1	annotation not avaliable (209 aa)	•			•	•	•	•		0.929
	scaffold_603399.1	annotation not avaliable (194 aa)	•			•	•	•			0.926
	fgenesh2_kg.1__189__AT1G02780.1	annotation not avaliable (214 aa)	•			•	•	•	•		0.922
	fgenesh2_kg.1__3446__AT1G33140.1	annotation not avaliable (194 aa)	•			•	•	•			0.921
	scaffold_502012.1	annotation not avaliable (146 aa)	•		•	•	•	•			0.917
	fgenesh2_kg.8__2660__AT5G67510.1	annotation not avaliable (146 aa)	•			•	•	•			0.915
	fgenesh2_kg.2__971__AT1G67430.1	annotation not avaliable (175 aa)	•			•	•	•	•		0.898
	fgenesh2_kg.7__621__AT4G34670.1	annotation not avaliable (262 aa)			•	•	•	•	•		0.898
	fgenesh2_kg.1__2897__AT1G27400.1	annotation not avaliable (176 aa)	•			•	•	•	•		0.896

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
PTZ00159	133	PTZ00159, PTZ00159, 60S ribosomal protein L32; Pro	4e-64
cd00513	107	cd00513, Ribosomal_L32_L32e, Ribosomal_L32_L32e: L	2e-58
pfam01655	110	pfam01655, Ribosomal_L32e, Ribosomal protein L32	1e-56
COG1717	133	COG1717, RPL32, Ribosomal protein L32E [Translatio	1e-35
PRK08562	125	PRK08562, rpl32e, 50S ribosomal protein L32e; Vali	5e-26
PRK12766	232	PRK12766, PRK12766, 50S ribosomal protein L32e; Pr	2e-12

>gnl|CDD|240297 PTZ00159, PTZ00159, 60S ribosomal protein L32; Provisional

 Score =  190 bits (486), Expect = 4e-64
 Identities = 86/133 (64%), Positives = 103/133 (77%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           M  P + KKIVKKR KKF R QS+R   VK +WR+P+GID+RVRR+FKG  LMP IGYGS
Sbjct: 1   MVKPKVKKKIVKKRTKKFTRFQSERFPRVKPSWRKPRGIDNRVRRRFKGTRLMPKIGYGS 60

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTR+ LP+GF KF V N K+LE+L+MHNR Y AEIAH+VS RKRK IVERA +L++ V
Sbjct: 61  DKKTRYLLPSGFYKFPVRNVKDLEMLLMHNRKYAAEIAHNVSARKRKAIVERAKELNVRV 120

Query: 121 TNKLARLRSQEDE 133
            N  ARLR +E E
Sbjct: 121 LNGNARLRKEEKE 133

Length = 133

>gnl|CDD|238284 cd00513, Ribosomal_L32_L32e, Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure

 Score =  176 bits (448), Expect = 2e-58
 Identities = 70/107 (65%), Positives = 82/107 (76%)

Query: 16  KKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKF 75
           KKFKR QSDR   + ++WR+P+GID++VRR+FKG   MP IGYGS KKTR   P+GFKK 
Sbjct: 1   KKFKRHQSDRYKRLGDSWRKPRGIDNKVRRRFKGKPAMPKIGYGSPKKTRGLHPSGFKKV 60

Query: 76  VVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
           +VHN KELE+L MHNRTY A IAH V  RKRKEIVERA +L I V N
Sbjct: 61  LVHNVKELEVLDMHNRTYAARIAHTVGARKRKEIVERAKELGIKVLN 107

L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea. Length = 107

>gnl|CDD|190064 pfam01655, Ribosomal_L32e, Ribosomal protein L32

 Score =  171 bits (436), Expect = 1e-56
 Identities = 67/109 (61%), Positives = 81/109 (74%)

Query: 14  RLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFK 73
           + KKFKR QSDR   +K +WR+P+GID++VRR+FKG   MP IGYGS KK R   P+GFK
Sbjct: 1   KTKKFKRHQSDRYKRLKPSWRKPRGIDNKVRRRFKGKPPMPKIGYGSPKKVRGLHPSGFK 60

Query: 74  KFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
           + +VHN K+LE L+M NRTY A IAH V  RKRKEIVERA +L I V N
Sbjct: 61  EVLVHNVKDLEKLLMDNRTYAARIAHTVGARKRKEIVERAKELGIKVLN 109

This family includes ribosomal protein L32 from eukaryotes and archaebacteria. Length = 110

>gnl|CDD|224631 COG1717, RPL32, Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]

 Score =  119 bits (299), Expect = 1e-35
 Identities = 59/126 (46%), Positives = 75/126 (59%), Gaps = 3/126 (2%)

Query: 4   PLLSKKIVKKRLKK-FKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDK 62
            LL  + V KR K  FKR +SDR   + E WRRP+GIDS++RRK KG   M  IGY S K
Sbjct: 10  RLLKIRRVLKRKKPEFKRQESDRYKRLGEKWRRPRGIDSKMRRKLKGKPPMVKIGYRSPK 69

Query: 63  KTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
             R   P+G+++ +VHN K+LE L    +   A IA  V  RKR EI+ERA +L I V N
Sbjct: 70  AVRGLHPSGYEEVLVHNVKDLEKLDPETQ--AARIASTVGARKRIEILERARELGIKVLN 127

Query: 123 KLARLR 128
              R+ 
Sbjct: 128 PGGRVE 133

Length = 133

>gnl|CDD|236288 PRK08562, rpl32e, 50S ribosomal protein L32e; Validated

 Score = 94.2 bits (235), Expect = 5e-26
 Identities = 46/115 (40%), Positives = 68/115 (59%), Gaps = 2/115 (1%)

Query: 8   KKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHY 67
           +  +K++  +FKR    R   + + WRRP+G+DS++R K KG   +  +GY S K  R  
Sbjct: 10  RLKLKRKKPEFKRQDWHRYKRLGDKWRRPRGLDSKMRLKLKGKPAIVEVGYRSPKAVRGL 69

Query: 68  LPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
            P+G+++ +VHN KELE L     T  A IA  V  RKR EI+++A +L I V N
Sbjct: 70  HPSGYEEVLVHNVKELEKL--DPETQAARIASTVGKRKRLEILKKARELGIKVLN 122

Length = 125

>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional

 Score = 61.4 bits (149), Expect = 2e-12
 Identities = 39/113 (34%), Positives = 54/113 (47%), Gaps = 4/113 (3%)

Query: 12  KKRLKK--FKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLP 69
           ++R  K  F R    +K     +WRRP+G  S+ RR  KG       G+ +    R   P
Sbjct: 111 RRREGKPQFNRQDYHKKKRTPTSWRRPRGGLSKQRRGIKGKGDTVEAGFRTPTAVRGKHP 170

Query: 70  NGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
           +GF++  VHNT +LE   +   T    IA  V  RKR+ I E A +  I V N
Sbjct: 171 SGFEEVRVHNTDDLE--GVDGDTEAVRIASKVGARKRERIEEVAEEQGIRVLN 221

Length = 232

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PTZ00159	133	60S ribosomal protein L32; Provisional	100.0
KOG0878	124	consensus 60S ribosomal protein L32 [Translation,	100.0
PF01655	110	Ribosomal_L32e: Ribosomal protein L32; InterPro: I	100.0
cd00513	107	Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a pr	100.0
PRK08562	125	rpl32e 50S ribosomal protein L32e; Validated	100.0
PRK12766	232	50S ribosomal protein L32e; Provisional	100.0
COG1717	133	RPL32 Ribosomal protein L32E [Translation, ribosom	100.0

>PTZ00159 60S ribosomal protein L32; Provisional

Probab=100.00  E-value=1.7e-70  Score=414.62  Aligned_cols=133  Identities=65%  Similarity=0.983  Sum_probs=131.8

Q ss_pred             CCCCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecc
Q 032796            1 MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNT   80 (133)
Q Consensus         1 m~~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nv   80 (133)
                      |+.|+++++|+||+|++|+|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||+
T Consensus         1 m~~p~~~~~ivkkr~~kF~R~~s~ry~rl~~sWRKPrGiDnkvRrr~kG~~~mp~iGYgS~k~tR~l~PsG~~~vlV~N~   80 (133)
T PTZ00159          1 MVKPKVKKKIVKKRTKKFTRFQSERFPRVKPSWRKPRGIDNRVRRRFKGTRLMPKIGYGSDKKTRYLLPSGFYKFPVRNV   80 (133)
T ss_pred             CCCCccccccccccCCcccccchhhccccccccCCCCCcccchhccccCccCCCcCccCCChhhcccCCCCCeeEEecCH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccccC
Q 032796           81 KELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE  133 (133)
Q Consensus        81 keLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e~~  133 (133)
                      +|||.|+|||++|||||||+||++||++|+++|+||||+|+|++|||++||+|
T Consensus        81 keLe~L~m~~~~~aa~Ia~~Vg~rKR~~I~~rA~eL~ikV~N~~arl~~ee~e  133 (133)
T PTZ00159         81 KDLEMLLMHNRKYAAEIAHNVSARKRKAIVERAKELNVRVLNGNARLRKEEKE  133 (133)
T ss_pred             HHHHHHhcCCcceEEEEecccccchHHHHHHHHHHhCCcccCCCcccchhhcC
Confidence            99999999999999999999999999999999999999999999999999987

>KOG0878 consensus 60S ribosomal protein L32 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.5e-66  Score=382.73  Aligned_cols=122  Identities=74%  Similarity=1.156  Sum_probs=120.2

Q ss_pred             CCCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecch
Q 032796            2 AVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTK   81 (133)
Q Consensus         2 ~~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvk   81 (133)
                      ..||++++|+||++++|+|||||+|.+++++||||+||||+|||||+|+++||+||||||++||||+||||++|+||||+
T Consensus         3 ~~pl~~~kivkkr~kkFirh~sdry~~v~~~WrkPrGiDnrVrRRFkgqilMPnIgYgsnKkTrh~lP~G~~kflv~nvk   82 (124)
T KOG0878|consen    3 MRPLVKPKIVKKRTKKFIRHQSDRYVRVKESWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTRHMLPNGFKKFLVHNVK   82 (124)
T ss_pred             CccccccHHHHHhcccccccccchhhhhhhhccCCCcchhHHHHHhccceeccccccCCCccceecCChhhhHHhhhhhh
Confidence            35999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCC
Q 032796           82 ELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK  123 (133)
Q Consensus        82 eLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~  123 (133)
                      |||.|+|||++|||||||+||+++|++|+|+|+||||+|+|+
T Consensus        83 ele~Llm~nk~YcaEIAhnVsak~r~~Ivera~qL~i~vtn~  124 (124)
T KOG0878|consen   83 ELEVLLMHNKTYCAEIAHNVSAKKRKAIVERAAQLGIRVTNR  124 (124)
T ss_pred             HHHHHHHhhHHHHHHHhhccccccHHHHHHHHHhhceeccCC
Confidence            999999999999999999999999999999999999999996

>PF01655 Ribosomal_L32e: Ribosomal protein L32; InterPro: IPR001515 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=100.00  E-value=2.7e-62  Score=360.06  Aligned_cols=110  Identities=63%  Similarity=1.017  Sum_probs=86.5

Q ss_pred             CCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHhhcCccc
Q 032796           14 RLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTY   93 (133)
Q Consensus        14 r~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~~~~~~~   93 (133)
                      +|++|+|||||+|+||++|||||+||||++|++|+|+++||+||||||++|||||||||++|+|||++|||.|+|||++|
T Consensus         1 k~~~F~R~~s~r~~rl~~sWRKPrGiDnk~Rrr~kG~~~mp~iGYgs~k~tR~l~PsG~~~~lV~n~~eLe~L~m~~~~~   80 (110)
T PF01655_consen    1 KTKKFIRHQSDRYKRLKDSWRKPRGIDNKVRRRFKGKPLMPNIGYGSPKKTRGLHPSGFRKVLVHNVKELEVLLMDNKSY   80 (110)
T ss_dssp             --S--B-TTTTTSTTS-SS-----SSS-TCCHT-TTS---S-GCGS--TTTTTB-TTSSEEEEESSHHHHHHCHHHTTTE
T ss_pred             CCCcccccccccccccccccCCCCcccCcceeeecCccCccccccCCCccccccCCCCCeEEEEeccchHHHHhcCCcce
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eEEeeccCccccHHHHHHHHHhcCccccCC
Q 032796           94 CAEIAHDVSTRKRKEIVERAAQLDIVVTNK  123 (133)
Q Consensus        94 ~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~  123 (133)
                      ||||||+||++||++|+|+|+||||+|+||
T Consensus        81 ~~~Ia~~Vg~kkr~~I~erA~el~ikV~N~  110 (110)
T PF01655_consen   81 AAEIAHNVGSKKRKEIVERAAELGIKVLNP  110 (110)
T ss_dssp             EEEE-TTS-HHHHHHHHHHHHHHT-EBSSH
T ss_pred             EEEEecCcccccHHHHHHHHHHhCCcccCC
Confidence            999999999999999999999999999996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. The L32e family consists of proteins that have 135 to 240 amino-acid residues.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3O58_b 3IZS_h 1S1I 3O5H_b 2ZKR_y 1Q7Y_Z 1VQ7_Y 3CCQ_Y 3CCV_Y 3CC7_Y ....

>cd00513 Ribosomal_L32_L32e Ribosomal_L32_L32e: L32 is a protein from the large subunit that contains a surface-exposed globular domain and a finger-like projection that extends into the RNA core to stabilize the tertiary structure

Probab=100.00  E-value=2.4e-61  Score=353.62  Aligned_cols=107  Identities=65%  Similarity=1.009  Sum_probs=106.1

Q ss_pred             CCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHhhcCccceE
Q 032796           16 KKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCA   95 (133)
Q Consensus        16 ~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~~~~~~~~a   95 (133)
                      ++|.|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||++|||.|+|||++|||
T Consensus         1 ~kF~R~~s~r~~rl~~sWRkPrGiDnkvRrr~kg~~~mp~iGYgS~k~tR~l~PsG~~~~lV~N~~eLe~l~~~n~~~~a   80 (107)
T cd00513           1 KKFKRHQSDRYKRLGDSWRKPRGIDNKVRRRFKGKPAMPKIGYGSPKKTRGLHPSGFKKVLVHNVKELEVLDMHNRTYAA   80 (107)
T ss_pred             CCccccchhcccccccccCCCCCcccchhccccCCCCCCcccCCCChhhcccCCCCCeEEEecCHHHHHHHhccCCeeEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeccCccccHHHHHHHHHhcCccccC
Q 032796           96 EIAHDVSTRKRKEIVERAAQLDIVVTN  122 (133)
Q Consensus        96 ~Ia~~Vg~kkr~~I~erA~el~ikV~N  122 (133)
                      ||||+||++||++|+|+|+||||+|+|
T Consensus        81 ~Ia~~Vg~rKR~~I~~rA~el~ikV~N  107 (107)
T cd00513          81 RIAHTVGARKRKEIVERAKELGIKVLN  107 (107)
T ss_pred             EEecccccchHHHHHHHHHHhCCcccC
Confidence            999999999999999999999999998

L32 does not appear to play a role in forming the A (aminacyl), P (peptidyl) or E (exit) sites of the ribosome, but does interact with 23S rRNA, which has a "kink-turn" secondary structure motif. L32 is overexpressed in human prostate cancer and has been identified as a stably expressed housekeeping gene in macrophages of human chronic obstructive pulmonary disease (COPD) patients. In Schizosaccharomyces pombe, L32 has also been suggested to play a role as a transcriptional regulator in the nucleus. Found in archaea and eukaryotes, this protein is known as L32 in eukaryotes and L32e in archaea.

>PRK08562 rpl32e 50S ribosomal protein L32e; Validated

Probab=100.00  E-value=5.9e-61  Score=359.54  Aligned_cols=115  Identities=40%  Similarity=0.636  Sum_probs=112.2

Q ss_pred             ccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHh
Q 032796            8 KKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLM   87 (133)
Q Consensus         8 ~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~   87 (133)
                      +..+|+++++|+|||||+|+||++|||||+||||+||++|+|+++||+||||||++|||||||||++|+|||++|||.| 
T Consensus        10 r~~~kkk~~kF~R~~s~r~~rl~~sWRKPrGiDnkvRrr~kg~~~mp~iGYgS~k~tR~l~PsG~~~vlV~N~keLe~l-   88 (125)
T PRK08562         10 RLKLKRKKPEFKRQDWHRYKRLGDKWRRPRGLDSKMRLKLKGKPAIVEVGYRSPKAVRGLHPSGYEEVLVHNVKELEKL-   88 (125)
T ss_pred             HHHhhccCCCcccccccccccccccCCCCCCcccchhccccCCCCCCcCCcCCChhhcccCCCCCeeEEecCHHHhhhc-
Confidence            3467999999999999999999999999999999999999999999999999999999999999999999999999999 


Q ss_pred             hcCccceEEeeccCccccHHHHHHHHHhcCccccCCC
Q 032796           88 MHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKL  124 (133)
Q Consensus        88 ~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~  124 (133)
                       ||++|||||||+||++||++|+|+|+||||+|+||.
T Consensus        89 -~~~~~aa~Ia~~Vg~rKR~~I~~rA~el~ikV~N~~  124 (125)
T PRK08562         89 -DPETQAARIASTVGKRKRLEILKKARELGIKVLNPG  124 (125)
T ss_pred             -cCCceEEEEeccccchhHHHHHHHHHHhCCcccCCC
Confidence             799999999999999999999999999999999996

>PRK12766 50S ribosomal protein L32e; Provisional

Probab=100.00  E-value=1.9e-55  Score=357.42  Aligned_cols=112  Identities=33%  Similarity=0.463  Sum_probs=109.4

Q ss_pred             ccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHhhcCc
Q 032796           12 KKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR   91 (133)
Q Consensus        12 Kkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~~~~~   91 (133)
                      ++++|+|+|||||+|+||++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||++|||.|  ||+
T Consensus       113 ~~~~p~F~R~~~~r~~r~~~sWRkPrGidnk~Rr~~kg~~~mp~iGYgS~k~~R~l~PsG~~~vlV~N~~eLe~l--~~~  190 (232)
T PRK12766        113 REGKPQFNRQDYHKKKRTPTSWRRPRGGLSKQRRGIKGKGDTVEAGFRTPTAVRGKHPSGFEEVRVHNTDDLEGV--DGD  190 (232)
T ss_pred             hccCCCeecccccccccccccCCCCCCCccchhcccCCCCCCCcCCCCCChhhcccCCCCCeeEEecCHHHHhhc--cCc
Confidence            567899999999999999999999999999999999999999999999999999999999999999999999999  799


Q ss_pred             cceEEeeccCccccHHHHHHHHHhcCccccCCCC
Q 032796           92 TYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLA  125 (133)
Q Consensus        92 ~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~a  125 (133)
                      +|||+|||+||+|||++|+++|+||||+|+||+-
T Consensus       191 ~~aa~Ia~~Vg~rKR~~I~erA~el~ikV~N~~~  224 (232)
T PRK12766        191 TEAVRIASKVGARKRERIEEVAEEQGIRVLNPTY  224 (232)
T ss_pred             ceEEEeeccccchhHHHHHHHHHHhCCcccCCCc
Confidence            9999999999999999999999999999999974

>COG1717 RPL32 Ribosomal protein L32E [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.9e-55  Score=330.26  Aligned_cols=122  Identities=47%  Similarity=0.711  Sum_probs=113.9

Q ss_pred             CCCccc-ccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchh
Q 032796            4 PLLSKK-IVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKE   82 (133)
Q Consensus         4 p~~~~k-ivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvke   82 (133)
                      +|++.+ .+|+++|+|.||+||||+|++++||+|+||||++|++++|.+.||+||||||+++||||||||++|||||++|
T Consensus        10 rLl~ir~~~k~kKp~F~R~~~~Rykrl~~~WRrPrG~dsK~Rr~~kg~p~~v~iGyrsPk~vRglhPSG~~~VlV~Nv~d   89 (133)
T COG1717          10 RLLKIRRVLKRKKPEFKRQESDRYKRLGEKWRRPRGIDSKMRRKLKGKPPMVKIGYRSPKAVRGLHPSGYEEVLVHNVKD   89 (133)
T ss_pred             HHHHHHHHHHhccchhhhHHHHHHhhhhhhccCCCCchHHHHHHhcCCCCCcccCCCCcHhhcccCCCccceeeeecHHH
Confidence            345555 4456678899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCce
Q 032796           83 LELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARL  127 (133)
Q Consensus        83 Le~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl  127 (133)
                      ||.|+  |.++||+|||+||++||.+|+++|.||||+|+||++|+
T Consensus        90 Le~ld--p~~~aarIAs~VG~rKR~eI~~rA~elGikVlN~~~r~  132 (133)
T COG1717          90 LEKLD--PETQAARIASTVGARKRIEILERARELGIKVLNPGGRV  132 (133)
T ss_pred             HhhcC--chhHHHHHHHhhhHHHHHHHHHHHHHhCcEEeCCcccc
Confidence            99997  56889999999999999999999999999999999986

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
3izr_h	133	Localization Of The Large Subunit Ribosomal Protein		3e-59
2zkr_y	135	Structure Of A Mammalian Ribosomal 60s Subunit With		6e-44
1s1i_0	130	Structure Of The Ribosomal 80s-Eef2-Sordarin Comple		2e-27
3jyw_0	109	Structure Of The 60s Proteins For Eukaryotic Riboso		9e-27
4a17_X	134	T.Thermophila 60s Ribosomal Subunit In Complex With		7e-26
3zf7_i	132	High-resolution Cryo-electron Microscopy Structure		6e-24
2zkr_9	58	Structure Of A Mammalian Ribosomal 60s Subunit With		6e-19
3j21_b	130	Promiscuous Behavior Of Proteins In Archaeal Riboso		3e-17
3cma_Y	240	The Structure Of Cca And Cca-Phe-Cap-Bio Bound To T		4e-08
1jj2_X	240	Fully Refined Crystal Structure Of The Haloarcula M		4e-08
1s72_Y	241	Refined Crystal Structure Of The Haloarcula Marismo		4e-08
3g4s_Y	142	Co-Crystal Structure Of Tiamulin Bound To The Large		6e-08
1ffk_V	143	Crystal Structure Of The Large Ribosomal Subunit Fr		3e-07

>pdb|3IZR|HH Chain h, Localization Of The Large Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 133

Iteration: 1
 Score =  223 bits (567), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 108/133 (81%), Positives = 111/133 (83%)
Query: 1   MAVPXXXXXXXXXXXXXXXRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
           MAVP               RP SDR I +K +WRRPKGIDSRVRRKFKGCTLMPNIGYGS
Sbjct: 1   MAVPLLTKKIVKKRVKQFKRPHSDRYIGLKTSWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           DKKTRHYLPN FKKFVVHN  ELELLMMHNRTYCAEIAH+VSTRKRKEIVERAAQLDIVV
Sbjct: 61  DKKTRHYLPNKFKKFVVHNVSELELLMMHNRTYCAEIAHNVSTRKRKEIVERAAQLDIVV 120
Query: 121 TNKLARLRSQEDE 133
           TNKLARLRSQEDE
Sbjct: 121 TNKLARLRSQEDE 133

>pdb|2ZKR|YY Chain y, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 135

Iteration: 1
 Score =  172 bits (435), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 99/114 (86%)
Query: 20  RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
           R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS+KKT+H LP+GF+KF+VHN
Sbjct: 22  RHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN 81
Query: 80  TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE 133
            KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN  ARLRS+E+E
Sbjct: 82  VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE 135

>pdb|1S1I|0 Chain 0, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From Yeast Obtained By Docking Atomic Models For Rna And Protein Components Into A 11.7 A Cryo-Em Map. This File, 1s1i, Contains 60s Subunit. The 40s Ribosomal Subunit Is In File 1s1h. Length = 130

Iteration: 1
 Score =  117 bits (292), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 59/108 (54%), Positives = 72/108 (66%)
Query: 20  RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
           R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKT+   P+G K F+V N
Sbjct: 19  RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVAN 78
Query: 80  TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARL 127
            K+LE L MH +TY AEIAH++S + R  I+ RA  L I VTN   RL
Sbjct: 79  VKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRL 126

>pdb|3JYW|0 Chain 0, Structure Of The 60s Proteins For Eukaryotic Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 109

Iteration: 1
 Score =  115 bits (287), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 57/103 (55%), Positives = 70/103 (67%)
Query: 20  RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
           R  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KKT+   P+G K F+V N
Sbjct: 6   RHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVAN 65
Query: 80  TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
            K+LE L MH +TY AEIAH++S + R  I+ RA  L I VTN
Sbjct: 66  VKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTN 108

>pdb|4A17|X Chain X, T.Thermophila 60s Ribosomal Subunit In Complex With Initiation Factor 6. This File Contains 5s Rrna, 5.8s Rrna And Proteins Of Molecule 2. Length = 134

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 55/112 (49%), Positives = 83/112 (74%)
Query: 20  RPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN 79
           R +S+    +  +WRRP+GID+RVRR+F+G   M  IG+ SD  T+H LPNGFKKF++ N
Sbjct: 21  RFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRN 80
Query: 80  TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQE 131
             +LE+L+M+NRTYC EIAH++S + +  +V+RAA+L + +TN  A+++ QE
Sbjct: 81  PADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQE 132

>pdb|3ZF7|II Chain i, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 132

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/100 (47%), Positives = 70/100 (70%)
Query: 29  VKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMM 88
           +  +WR+P+G DS VRR++KG   MPN GYGSD++T++  P+GFK F V+N ++L +L+M
Sbjct: 29  LSSSWRKPRGEDSPVRRRYKGQKAMPNKGYGSDRRTKYITPSGFKNFPVNNVQDLYMLLM 88
Query: 89  HNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLR 128
            NR Y   I+H V  + RK IV +A +LD+ + N  A+LR
Sbjct: 89  QNRKYAGVISHTVGAKARKAIVRKAHELDVRLINGNAKLR 128

>pdb|2ZKR|9 Chain 9, Structure Of A Mammalian Ribosomal 60s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 58

Iteration: 1
 Score = 89.4 bits (220), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 40/57 (70%), Positives = 50/57 (87%)
Query: 66  HYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
           H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I VTN
Sbjct: 1   HMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTN 57

>pdb|3J21|BB Chain b, Promiscuous Behavior Of Proteins In Archaeal Ribosomes Revealed By Cryo-em: Implications For Evolution Of Eukaryotic Ribosomes (50s Ribosomal Proteins) Length = 130

Iteration: 1
 Score = 83.6 bits (205), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 44/90 (48%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 33  WRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNRT 92
           WRRPKGIDS++R K KG    P+IG+ S K  R   P+G+++ +VHN KELE L    + 
Sbjct: 40  WRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL--DPKR 97
Query: 93  YCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
             A IAH V  +KR EI++RA +L I V N
Sbjct: 98  QAARIAHTVGKKKRIEIIKRAEELGIKVLN 127

>pdb|3CMA|Y Chain Y, The Structure Of Cca And Cca-Phe-Cap-Bio Bound To The Large Ribosomal Subunit Of Haloarcula Marismortui Length = 240

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 25  RKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELE 84
           +K  V  +WR+P+G  S+ RR  KG       G+ S    R   P+GF++  VHN  +LE
Sbjct: 136 KKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE 195
Query: 85  LLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
              +   T    IA  V  RKR+ I E A    I V N
Sbjct: 196 --GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 231

>pdb|1JJ2|X Chain X, Fully Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 240

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 25  RKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELE 84
           +K  V  +WR+P+G  S+ RR  KG       G+ S    R   P+GF++  VHN  +LE
Sbjct: 135 KKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE 194
Query: 85  LLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
              +   T    IA  V  RKR+ I E A    I V N
Sbjct: 195 --GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 230

>pdb|1S72|Y Chain Y, Refined Crystal Structure Of The Haloarcula Marismortui Large Ribosomal Subunit At 2.4 Angstrom Resolution Length = 241

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 25  RKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELE 84
           +K  V  +WR+P+G  S+ RR  KG       G+ S    R   P+GF++  VHN  +LE
Sbjct: 136 KKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE 195
Query: 85  LLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
              +   T    IA  V  RKR+ I E A    I V N
Sbjct: 196 --GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 231

>pdb|3G4S|Y Chain Y, Co-Crystal Structure Of Tiamulin Bound To The Large Ribosomal Subunit Length = 142

Iteration: 1
 Score = 52.8 bits (125), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 35/98 (35%), Positives = 47/98 (47%), Gaps = 2/98 (2%)
Query: 25  RKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELE 84
           +K  V  +WR+P+G  S+ RR  KG       G+ S    R   P+GF++  VHN  +LE
Sbjct: 41  KKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE 100
Query: 85  LLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
              +   T    IA  V  RKR+ I E A    I V N
Sbjct: 101 --GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 136

>pdb|1FFK|V Chain V, Crystal Structure Of The Large Ribosomal Subunit From Haloarcula Marismortui At 2.4 Angstrom Resolution Length = 143

Iteration: 1
 Score = 50.1 bits (118), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 34/98 (34%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Query: 25  RKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELE 84
           +K  V  +WR+P+G  S+ RR  KG       G+ S    R   P+GF++  VHN  +LE
Sbjct: 38  KKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLE 97
Query: 85  LLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
              +   T    I   V  RKR+ I E A    I V N
Sbjct: 98  --GVDGDTEAVRINSKVGARKRERIEEEAEDAGIRVLN 133

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
3iz5_H	258	60S ribosomal protein L7A (L7AE); eukaryotic ribos	2e-50
2zkr_y	135	60S ribosomal protein L32; protein-RNA complex, 60	2e-48
4a17_X	134	RPL32, 60S ribosomal protein L32; eukaryotic ribos	6e-48
3u5e_e	130	60S ribosomal protein L32, 60S ribosomal protein L	1e-46
1vq8_Y	241	50S ribosomal protein L32E; ribosome 50S, protein-	5e-42

>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 135

 Score =  150 bits (380), Expect = 2e-48
 Identities = 90/133 (67%), Positives = 111/133 (83%)

Query: 1   MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGS 60
              PL+  KIVKKR KKF R QSDR + +K NWR+P+GID+RVRR+FKG  LMPNIGYGS
Sbjct: 3   ALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGS 62

Query: 61  DKKTRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVV 120
           +KKT+H LP+GF+KF+VHN KELE+L+M N++YCAEIAH+VS++ RK IVERAAQL I V
Sbjct: 63  NKKTKHMLPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRV 122

Query: 121 TNKLARLRSQEDE 133
           TN  ARLRS+E+E
Sbjct: 123 TNPNARLRSEENE 135

>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X Length = 134

 Score =  149 bits (378), Expect = 6e-48
 Identities = 65/128 (50%), Positives = 95/128 (74%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
           P+  KKI+KKR KKF R +S+    +  +WRRP+GID+RVRR+F+G   M  IG+ SD  
Sbjct: 5   PVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAA 64

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+H LPNGFKKF++ N  +LE+L+M+NRTYC EIAH++S + +  +V+RAA+L + +TN 
Sbjct: 65  TKHLLPNGFKKFLIRNPADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNA 124

Query: 124 LARLRSQE 131
            A+++ QE
Sbjct: 125 NAKVKVQE 132

>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 3jyw_0 Length = 130

 Score =  146 bits (369), Expect = 1e-46
 Identities = 69/127 (54%), Positives = 83/127 (65%)

Query: 4   PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKK 63
            L   KIVKK  KKFKR  SDR   V ENWR+ KGIDS VRR+F+G    P IGYGS+KK
Sbjct: 3   SLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKK 62

Query: 64  TRHYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNK 123
           T+   P+G K F+V N K+LE L MH +TY AEIAH++S + R  I+ RA  L I VTN 
Sbjct: 63  TKFLSPSGHKTFLVANVKDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNP 122

Query: 124 LARLRSQ 130
             RL  +
Sbjct: 123 KGRLALE 129

>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ... Length = 241

 Score =  138 bits (348), Expect = 5e-42
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 2/115 (1%)

Query: 8   KKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHY 67
            +  +    +F R    +K  V  +WR+P+G  S+ RR  KG       G+ S    R  
Sbjct: 119 TQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGK 178

Query: 68  LPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
            P+GF++  VHN  +LE   +   T    IA  V  RKR+ I E A    I V N
Sbjct: 179 HPSGFEEVRVHNVDDLE--GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 231

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
3iz5_h	133	60S ribosomal protein L32 (L32E); eukaryotic ribos	100.0
3u5e_e	130	60S ribosomal protein L32, 60S ribosomal protein L	100.0
4a17_X	134	RPL32, 60S ribosomal protein L32; eukaryotic ribos	100.0
2zkr_y	135	60S ribosomal protein L32; protein-RNA complex, 60	100.0
3j21_b	130	PFEL32, 50S ribosomal protein L32E; archaea, archa	100.0
1vq8_Y	241	50S ribosomal protein L32E; ribosome 50S, protein-	100.0

>3u5e_e 60S ribosomal protein L32, 60S ribosomal protein L31-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_h 1s1i_0 3izs_h 3o5h_b 3o58_b 3u5i_e 4b6a_e 3jyw_0

Probab=100.00  E-value=2.1e-73  Score=428.09  Aligned_cols=130  Identities=55%  Similarity=0.808  Sum_probs=126.4

Q ss_pred             CCCCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecc
Q 032796            1 MAVPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNT   80 (133)
Q Consensus         1 m~~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nv   80 (133)
                      |+ |+++++||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+||||
T Consensus         1 m~-~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~kktr~l~PsGf~~~lV~Nv   79 (130)
T 3u5e_e            1 MA-SLPHPKIVKKHTKKFKRHHSDRYHRVAENWRKQKGIDSVVRRRFRGNISQPKIGYGSNKKTKFLSPSGHKTFLVANV   79 (130)
T ss_dssp             -C-CCCCSCCCCSCCSCCCCTTTTTCTTSCSSCCCCCCSSCTTTTTCTTSCCCCCGGGCCCTTTTTBCTTSCEEEEESSH
T ss_pred             CC-CCCCCceeeccCCCccccccccccccCCCCCCCCCcccchhccccCCcCCCcCCCCCChhhcccCCCCCceEEeCCH
Confidence            77 99999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccc
Q 032796           81 KELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQE  131 (133)
Q Consensus        81 keLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e  131 (133)
                      +|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++||
T Consensus        80 keLe~Llm~n~~~~aeIAh~Vs~rkR~~IverA~ql~irV~Np~arl~~ee  130 (130)
T 3u5e_e           80 KDLETLTMHTKTYAAEIAHNISAKNRVVILARAKALGIKVTNPKGRLALEA  130 (130)
T ss_dssp             HHHGGGTTCTTTEEEEECTTCCHHHHHHHHHHHHHHTCCBSCTTTTCCC--
T ss_pred             HHHHHHhcCCcccEEEEecccccccHHHHHHHHHHhCCcccCCCccccccC
Confidence            999999999999999999999999999999999999999999999999997

>4a17_X RPL32, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_X 4a1c_X 4a1e_X

Probab=100.00  E-value=4.1e-73  Score=428.28  Aligned_cols=133  Identities=50%  Similarity=0.884  Sum_probs=123.1

Q ss_pred             CC-CCCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEec
Q 032796            1 MA-VPLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN   79 (133)
Q Consensus         1 m~-~p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~n   79 (133)
                      || .|+++++||||+|++|+|||||+|++|++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||
T Consensus         1 ~~~~~~~~~kivKkrtkkF~R~~sdry~ri~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~N   80 (134)
T 4a17_X            1 MAIKPVAHKKIIKKRTKKFVRFESEDFAKLDSSWRRPRGIDNRVRRRFRGQRRMAKIGFASDAATKHLLPNGFKKFLIRN   80 (134)
T ss_dssp             --CCCCCCCCCCCSCCSCCCCTTTTTCSSSCCSCCCCCCSSCTGGGTCTTSCCCCCSTTSCCTTTTTBCTTSCEEEEECS
T ss_pred             CCccCCCCCcceeccCCCccccccccccccCCCCCCCCCcccchhhcccCccCCCccCcCCChhhcccCCCCCeEEEeCC
Confidence            55 39999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccccC
Q 032796           80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE  133 (133)
Q Consensus        80 vkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e~~  133 (133)
                      |+|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++|||.
T Consensus        81 vkeLe~Llm~n~~~aaeIAh~Vs~rkR~~IverA~qL~irV~Np~arl~~ee~~  134 (134)
T 4a17_X           81 PADLEILLMNNRTYCGEIAHNISAQVKAALVKRAAELGVRLTNANAKVKVQESA  134 (134)
T ss_dssp             SHHHHHHHHHTTTEEEEECTTSCHHHHHHHHHHHHHHTCCBSSCCCC-------
T ss_pred             HHHHHHHhcCCcccEEEEecCcccccHHHHHHHHHHhCCcccCCcccceecccC
Confidence            999999999999999999999999999999999999999999999999999983

>2zkr_y 60S ribosomal protein L32; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=100.00  E-value=1.2e-72  Score=426.02  Aligned_cols=133  Identities=68%  Similarity=1.093  Sum_probs=58.5

Q ss_pred             CCC-CCCcccccccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEec
Q 032796            1 MAV-PLLSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHN   79 (133)
Q Consensus         1 m~~-p~~~~kivKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~n   79 (133)
                      |+. |+++++|+||+|++|+|||||+|+||++|||||+||||+|||+|+|+++||+||||||++|||||||||++|+|||
T Consensus         2 m~~~~~~~~kivKkr~~kF~R~~sdry~rl~~~WRKPrGiDnrvRrrfkG~~~mp~iGYgS~k~tR~l~PsGf~~~lV~N   81 (135)
T 2zkr_y            2 AALRPLVKPKIVKKRTKKFIRHQSDRYVKIKRNWRKPRGIDNRVRRRFKGQILMPNIGYGSNKKTKHMLPSGFRKFLVHN   81 (135)
T ss_dssp             ---CTTTTTSSSSSCCCC-CCTTTTTCTTSCC-CCCCCCSSCTTTCC-CCSCCCSCTTSCCCTTCC--------------
T ss_pred             CCCcCCCCccccccCCCcccCcchhhccccCccccCCCCCcccceeeccCCCCCCcccCCCChhhcccCCCCCeEEEeCC
Confidence            453 8999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhhHHHhhcCccceEEeeccCccccHHHHHHHHHhcCccccCCCCceeccccC
Q 032796           80 TKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLARLRSQEDE  133 (133)
Q Consensus        80 vkeLe~L~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~arl~~~e~~  133 (133)
                      ++|||+|+|||++|||||||+||++||++|+|+|+||||+|+||+|||++||+|
T Consensus        82 vkeLe~Llm~n~~~aaeIah~Vs~kKR~~IverA~eL~IkV~N~~arl~~~e~e  135 (135)
T 2zkr_y           82 VKELEVLLMCNKSYCAEIAHNVSSKNRKAIVERAAQLAIRVTNPNARLRSEENE  135 (135)
T ss_dssp             ------------------------------------------------------
T ss_pred             HHHHHHHhcCCCceEEEEecccccccHHHHHHHHHHhCCeeeCCccccchhccC
Confidence            999999999999999999999999999999999999999999999999999987

>3j21_b PFEL32, 50S ribosomal protein L32E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=100.00  E-value=2.8e-62  Score=367.62  Aligned_cols=114  Identities=43%  Similarity=0.655  Sum_probs=111.4

Q ss_pred             cccccCCCCccCCCCCCcccccC--cccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHH
Q 032796            9 KIVKKRLKKFKRPQSDRKISVKE--NWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELL   86 (133)
Q Consensus         9 kivKkr~~kF~R~~sdr~~ri~~--sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L   86 (133)
                      ..+|+++|+|+|||||+|++|++  |||||+||||+||++|+|+++||+||||||++|||||||||++|+||||+|||+|
T Consensus        14 ~~~k~k~pkF~R~~sdr~~ri~~~~~WRKPrGiDnrvRrrfKG~~~mp~iGYgS~kktR~l~PsGf~~~lV~NvkeLe~L   93 (130)
T 3j21_b           14 ARLKRKKPRFLRQEWWRYPKFKNDPKWRRPKGIDSKMRLKLKGKPRSPSIGWSSPKLVRGLHPSGYEEVLVHNVKELEAL   93 (130)
T ss_dssp             HHHHHCCCCCCCSCCSSCSSSCSSCCCCCCCCSSCHHHHTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEECSTTTTTTC
T ss_pred             HHHhhcCCCeeccccccceecCCCCCCCCCCCcccchhccccCCCCCCccCCCCcccccccCCCCCceEEecCHHHHHhh
Confidence            46788999999999999999999  9999999999999999999999999999999999999999999999999999998


Q ss_pred             hhcCccceEEeeccCccccHHHHHHHHHhcCccccCCC
Q 032796           87 MMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKL  124 (133)
Q Consensus        87 ~~~~~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~  124 (133)
                        ||++|||||||+||++||++|+|+|+||||+|+||+
T Consensus        94 --~~~~~~aeIAh~Vs~rkR~~IverA~qL~ikV~Np~  129 (130)
T 3j21_b           94 --DPKRQAARIAHTVGKKKRIEIIKRAEELGIKVLNPR  129 (130)
T ss_dssp             --CTTTEEEEECTTCCHHHHHHHHHHHHHHTCCCCCCC
T ss_pred             --CCCCceEEEecCcccccHHHHHHHHHHhCCcccCCC
Confidence              899999999999999999999999999999999997

>1vq8_Y 50S ribosomal protein L32E; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: c.9.2.1 PDB: 1vq4_Y* 1vq5_Y* 1vq6_Y* 1vq7_Y* 1s72_Y* 1vq9_Y* 1vqk_Y* 1vql_Y* 1vqm_Y* 1vqn_Y* 1vqo_Y* 1vqp_Y* 1yhq_Y* 1yi2_Y* 1yij_Y* 1yit_Y* 1yj9_Y* 1yjn_Y* 1yjw_Y* 2otj_Y* ...

Probab=100.00  E-value=1.5e-43  Score=286.68  Aligned_cols=112  Identities=33%  Similarity=0.474  Sum_probs=109.8

Q ss_pred             ccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHhhcCc
Q 032796           12 KKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHNR   91 (133)
Q Consensus        12 Kkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~~~~~   91 (133)
                      ++++|+|+|||||+|+||+++||+|+||||+||++|+|+++||+||||||++||++|||||+.|+|||++||+.|  +|+
T Consensus       123 ~~~~~efvr~d~d~~~~~~~~wrkP~g~d~~vr~~f~g~~~~~~ig~~s~~k~r~~lp~G~~~~~v~n~~dL~~l--~~~  200 (241)
T 1vq8_Y          123 RVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DGD  200 (241)
T ss_dssp             HHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CTT
T ss_pred             ccCCCCeeccchhheeecccCcCCCCCccHHHHHHHhCCCCCCccccCCCCceEEECCCCCEeeeccCHhHhhcc--CcH
Confidence            678999999999999999999999999999999999999999999999999999999999999999999999998  699


Q ss_pred             cceEEeeccCccccHHHHHHHHHhcCccccCCCC
Q 032796           92 TYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKLA  125 (133)
Q Consensus        92 ~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~a  125 (133)
                      +||++|+|+||+++|.+|+++|+|+||+|+||++
T Consensus       201 ~~~a~i~~~tGskkh~~i~~~A~~~gikv~n~~~  234 (241)
T 1vq8_Y          201 TEAVRIASKVGARKRERIEEEAEDAGIRVLNPTY  234 (241)
T ss_dssp             TEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCCE
T ss_pred             HHHHHHHHHhccHhHHHHHHHHHHcCCcccCCCc
Confidence            9999999999999999999999999999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1vqoy1	142	c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeo	2e-47

>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 142

class: Alpha and beta proteins (a/b)
fold: Barstar-like
superfamily: Ribosomal protein L32e
family: Ribosomal protein L32e
domain: Ribosomal protein L32e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score =  147 bits (373), Expect = 2e-47
 Identities = 38/117 (32%), Positives = 53/117 (45%), Gaps = 2/117 (1%)

Query: 6   LSKKIVKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTR 65
           L  +  +    +F R    +K  V  +WR+P+G  S+ RR  KG       G+ S    R
Sbjct: 22  LLTQRHRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVR 81

Query: 66  HYLPNGFKKFVVHNTKELELLMMHNRTYCAEIAHDVSTRKRKEIVERAAQLDIVVTN 122
              P+GF++  VHN  +LE   +   T    IA  V  RKR+ I E A    I V N
Sbjct: 82  GKHPSGFEEVRVHNVDDLE--GVDGDTEAVRIASKVGARKRERIEEEAEDAGIRVLN 136

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1vqoy1	142	Ribosomal protein L32e {Archaeon Haloarcula marism	100.0

>d1vqoy1 c.9.2.1 (Y:95-236) Ribosomal protein L32e {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a/b)
fold: Barstar-like
superfamily: Ribosomal protein L32e
family: Ribosomal protein L32e
domain: Ribosomal protein L32e
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=100.00  E-value=9.1e-57  Score=339.96  Aligned_cols=112  Identities=33%  Similarity=0.474  Sum_probs=108.6

Q ss_pred             cccCCCCccCCCCCCcccccCcccCCCCCCcchhccccCCCCCCCCCCCCCccccccCCCCceEEEEecchhhHHHhhcC
Q 032796           11 VKKRLKKFKRPQSDRKISVKENWRRPKGIDSRVRRKFKGCTLMPNIGYGSDKKTRHYLPNGFKKFVVHNTKELELLMMHN   90 (133)
Q Consensus        11 vKkr~~kF~R~~sdr~~ri~~sWRKPrGidnkvRrr~kG~~~mp~iGYgS~k~tr~l~PsG~~~~lV~nvkeLe~L~~~~   90 (133)
                      .++++|+|.|||||+|+||+++||||+||||+||++|+|+++||+||||||++|||||||||++|+|||++|||.|  +|
T Consensus        27 ~k~~kp~F~R~~s~r~~Rl~~~WRkPrGiDnkvRr~~KG~~~mp~iGYgspk~~Rgl~PsGf~~vlV~Nv~dLe~l--~~  104 (142)
T d1vqoy1          27 HRVGKPQFNRQDHHKKKRVSTSWRKPRGQLSKQRRGIKGKGDTVEAGFRSPTAVRGKHPSGFEEVRVHNVDDLEGV--DG  104 (142)
T ss_dssp             HHHCCCCCCCTTGGGCTTSCSSCCCCCCTTCTTTTTCTTSCCCCCGGGCCCTTTTTCCTTSCEEEEESSGGGGTTC--CT
T ss_pred             HhccCCCEeecchhhhccccccccCCCCCcchhhccccCCCCCCccccCccHhhcccCcCcCEEEEecCHHHHHhh--CC
Confidence            4667899999999999999999999999999999999999999999999999999999999999999999999987  68


Q ss_pred             ccceEEeeccCccccHHHHHHHHHhcCccccCCC
Q 032796           91 RTYCAEIAHDVSTRKRKEIVERAAQLDIVVTNKL  124 (133)
Q Consensus        91 ~~~~a~Ia~~Vg~kkr~~I~erA~el~ikV~N~~  124 (133)
                      ++|||+|||+||++||.+|+++|+||||+|+||.
T Consensus       105 ~~~a~~Ia~~Vg~kKR~~Ii~rA~elgikV~NPk  138 (142)
T d1vqoy1         105 DTEAVRIASKVGARKRERIEEEAEDAGIRVLNPT  138 (142)
T ss_dssp             TTEEEEECTTSCHHHHHHHHHHHHHTTCCBSSCC
T ss_pred             CceEEEEEcccchhhHHHHHHHHHHhCCEecCCc
Confidence            9999999999999999999999999999999994