Citrus Sinensis ID: 032992

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFEPLEVPTDVEGFE
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHccHHHHccccccHHHHHccccccEEEEccccccEEEEEEEccccccccccEEEEEEEcccccEEEEEEEEEEEEEEccccccccccccEEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccHEHHHHccHHHHHHHHHHccHHHHHHHHccEEEEccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEcccccEEEEEcccHHcccccccccccccccc
Coil and Loop (DISEMBL)
mvqsedkatkekgvpdFWFIAMESHHELRQNIVRHDQGALKyltdikwcrindsegfkleftfgpnpyfknsvlektYRMIDETDIVLEEAIGTVihwypgqcwieKAERSffnffeplevptdvegfe
Flexible Loop (DISEMBL)
mvqsedkatkekgvpdFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGfkleftfgpnpyfknsVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFfeplevptdvegfe
Low Complexity Region (SEG)
MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFEPLEVPTDVEGFE
Disordered region (IsUnstruct)
*************VPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFEPLEV********
Disordered Region (DISOPRED)
************GV*DFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFE************
Disordered Region (DISEMBL)
**********EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFEPLEVPTDVEGFE
Disordered Region (DISPRO)
**********EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFEPL**********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERSFFNFFEPLEVPTDVEGFE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
O59797	393	Putative nucleosome assem	yes	no	0.821	0.269	0.333	6e-12
Q55ED1	321	Probable nucleosome assem	yes	no	0.751	0.302	0.34	1e-11
Q5R675	510	Nucleosome assembly prote	yes	no	0.860	0.217	0.326	4e-11
Q99457	506	Nucleosome assembly prote	yes	no	0.860	0.219	0.326	4e-11
Q794H2	544	Nucleosome assembly prote	yes	no	0.860	0.204	0.326	1e-10
Q99733	375	Nucleosome assembly prote	no	no	0.914	0.314	0.313	1e-10
P51860	460	Nucleosome assembly prote	no	no	0.829	0.232	0.345	2e-10
P55209	391	Nucleosome assembly prote	no	no	0.860	0.283	0.328	3e-10
P28656	391	Nucleosome assembly prote	no	no	0.860	0.283	0.328	3e-10
A6H767	391	Nucleosome assembly prote	yes	no	0.860	0.283	0.328	4e-10

>sp|O59797|YCO6_SCHPO Putative nucleosome assembly protein C364.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPCC364.06 PE=1 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 44/132 (33%), Positives = 64/132 (48%), Gaps = 26/132 (19%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKN 71
           KG+P+FW  AM++   L + I   D+GAL +L DI+   + +  GFKLEF F  NP+F N
Sbjct: 162 KGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYM-EKPGFKLEFEFAENPFFTN 220

Query: 72  SVLEKTYRMIDETD----IVLEEAIGTVIHWYPGQCW----IEKAER------------- 110
            +L KTY  ++E+      + + A G  + W          + K +R             
Sbjct: 221 KILTKTYYYMEESGPSNVFLYDHAEGDKVDWKENADLTVRTVTKKQRNKNTKQTRVVKVS 280

Query: 111 ----SFFNFFEP 118
               SFFNFF P
Sbjct: 281 VPRDSFFNFFNP 292

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

>sp|Q55ED1|NAP1_DICDI Probable nucleosome assembly protein OS=Dictyostelium discoideum GN=nap1 PE=2 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 34/100 (34%), Positives = 61/100 (61%), Gaps = 3/100 (3%)

Query: 11  EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFK 70
           +KG+P FW   ++ + E++  I   D  AL+YL DIK  ++ D++ + L+F F  NP+F 
Sbjct: 98  DKGIPKFWLHVLQ-NTEVKDIIEECDIEALEYLVDIKIVQVGDAQDYSLDFHFSENPFFT 156

Query: 71  NSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER 110
           N+V+ KT ++  E D  L E + T I+W  G+ +  ++++
Sbjct: 157 NTVISKTVKL--EEDNELNEIVSTPINWKDGKNFTVQSKK 194

May modulate chromatin structure by regulation of histone octamer formation.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5R675|NP1L3_PONAB Nucleosome assembly protein 1-like 3 OS=Pongo abelii GN=NAP1L3 PE=2 SV=1

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 30/141 (21%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDI--KWCRINDSEGFKLEFTFGPNPYF 69
           KG+PD+W I +++  +L   I ++D+  LK+L+D+  K+ +      +  EF F PNPYF
Sbjct: 313 KGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYF 372

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQ--------------CWIE 106
           +N VL KTY +  + D           +E+  G  I W  G+                IE
Sbjct: 373 RNEVLVKTYIIKSKPDHNDPFFSWGWEIEDCEGCKIDWRRGKDVTVTTTQSRTTATGEIE 432

Query: 107 KAER-----SFFNFFEPLEVP 122
              R     SFFNFF P E+P
Sbjct: 433 IQPRVVPNASFFNFFSPPEIP 453

Pongo abelii (taxid: 9601)

>sp|Q99457|NP1L3_HUMAN Nucleosome assembly protein 1-like 3 OS=Homo sapiens GN=NAP1L3 PE=2 SV=2

 Score = 66.6 bits (161), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 68/141 (48%), Gaps = 30/141 (21%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDI--KWCRINDSEGFKLEFTFGPNPYF 69
           KG+PD+W I +++  +L   I ++D+  LK+L+D+  K+ +      +  EF F PNPYF
Sbjct: 309 KGIPDYWLIVLKNVDKLGPMIQKYDEPILKFLSDVSLKFSKPGQPVSYTFEFHFLPNPYF 368

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQ--------------CWIE 106
           +N VL KTY +  + D           +E+  G  I W  G+                IE
Sbjct: 369 RNEVLVKTYIIKAKPDHNDPFFSWGWEIEDCKGCKIDWRRGKDVTVTTTQSRTTATGEIE 428

Query: 107 KAER-----SFFNFFEPLEVP 122
              R     SFFNFF P E+P
Sbjct: 429 IQPRVVPNASFFNFFSPPEIP 449

Homo sapiens (taxid: 9606)

>sp|Q794H2|NP1L3_MOUSE Nucleosome assembly protein 1-like 3 OS=Mus musculus GN=Nap1l3 PE=2 SV=1

 Score = 65.5 bits (158), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 46/141 (32%), Positives = 66/141 (46%), Gaps = 30/141 (21%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDI--KWCRINDSEGFKLEFTFGPNPYF 69
           KG+PD+W   +++  +L   I + D+  LK+L+D+  K+       G+  EF F PNPYF
Sbjct: 347 KGIPDYWLTVLKNVDKLGPMIQKCDEPILKFLSDVSLKFSNPGQPIGYTFEFHFLPNPYF 406

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQ--------------CWIE 106
           +N +L KTY +  + D           +EE  G  I W  G+                IE
Sbjct: 407 RNELLMKTYIIRSKPDHYDPFFAWGWEIEECKGCKIDWRRGKDVTVTTTRSRPGITGEIE 466

Query: 107 KAER-----SFFNFFEPLEVP 122
              R     SFFNFF P E+P
Sbjct: 467 VQPRVVPNASFFNFFSPPEIP 487

Mus musculus (taxid: 10090)

>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 63/150 (42%), Gaps = 32/150 (21%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FWF    +   L + +  +D+  LK+L DIK  +        F LEF F PN YF
Sbjct: 157 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSDPGQPMSFVLEFHFEPNDYF 216

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQCWI--------------- 105
            NSVL KTY+M  E D           + +  G  I W  G+                  
Sbjct: 217 TNSVLTKTYKMKSEPDKADPFSFEGPEIVDCDGCTIDWKKGKNVTVKTIKKKQKHKGRGT 276

Query: 106 ------EKAERSFFNFFEPLEVPTDVEGFE 129
                 +    SFFNFF PL+   D E  +
Sbjct: 277 VRTITKQVPNESFFNFFNPLKASGDGESLD 306

Homo sapiens (taxid: 9606)

>sp|P51860|NP1L2_MOUSE Nucleosome assembly protein 1-like 2 OS=Mus musculus GN=Nap1l2 PE=2 SV=2

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 48/139 (34%), Positives = 63/139 (45%), Gaps = 32/139 (23%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE--GFKLEFTFGPNPYF 69
           KG+PDFW   +++   L   I ++D+  LK LTDIK    +  E   F LEF F PN YF
Sbjct: 238 KGIPDFWLTVLKNVEALTPMIKKYDEPILKLLTDIKVKLSDPGEPLSFTLEFHFKPNEYF 297

Query: 70  KNSVLEKTYRMIDE---------TDIVLEEAIGTVIHWYPGQC----WIEKAER------ 110
           KN +L KTY +  +             +E A G  I W  G+      I+K +R      
Sbjct: 298 KNELLTKTYVLKSKLACYDPHPYRGTAIEYATGCDIDWNEGKNVTLRTIKKKQRHRVWGT 357

Query: 111 -----------SFFNFFEP 118
                      SFFNFF P
Sbjct: 358 VRTVTEDFPKDSFFNFFSP 376

Acidic protein which may be involved in interactions with other proteins or DNA.

Mus musculus (taxid: 10090)

>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 58/143 (40%), Gaps = 32/143 (22%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYF 224

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQ------------------ 102
            N VL KTYRM  E D           +    G  I W  G+                  
Sbjct: 225 TNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGT 284

Query: 103 ---CWIEKAERSFFNFFEPLEVP 122
                   +  SFFNFF P EVP
Sbjct: 285 VRTVTKTVSNDSFFNFFAPPEVP 307

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Homo sapiens (taxid: 9606)

>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2

 Score = 63.5 bits (153), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 58/143 (40%), Gaps = 32/143 (22%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNDYF 224

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQ------------------ 102
            N VL KTYRM  E D           +    G  I W  G+                  
Sbjct: 225 TNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGT 284

Query: 103 ---CWIEKAERSFFNFFEPLEVP 122
                   +  SFFNFF P EVP
Sbjct: 285 VRTVTKTVSNDSFFNFFAPPEVP 307

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Mus musculus (taxid: 10090)

>sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1

 Score = 63.5 bits (153), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 47/143 (32%), Positives = 58/143 (40%), Gaps = 32/143 (22%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYF 69
           KG+P+FW    ++   L   +  HD+  LK+L DIK  +        F LEF F PN YF
Sbjct: 165 KGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPMSFVLEFHFEPNEYF 224

Query: 70  KNSVLEKTYRMIDETDIV---------LEEAIGTVIHWYPGQ------------------ 102
            N VL KTYRM  E D           +    G  I W  G+                  
Sbjct: 225 TNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGT 284

Query: 103 ---CWIEKAERSFFNFFEPLEVP 122
                   +  SFFNFF P EVP
Sbjct: 285 VRTVTKTVSNDSFFNFFAPPEVP 307

May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
353441156	258	nucleosome assembly protein 1 [Elaeis gu	0.922	0.461	0.539	9e-35
372477765	377	nucleosome assembly protein [Malus x dom	1.0	0.342	0.496	1e-33
224087993	378	nucleosome/chromatin assembly factor gro	0.945	0.322	0.549	5e-33
359482848	381	PREDICTED: nucleosome assembly protein 1	0.945	0.320	0.514	6e-33
297738653	386	unnamed protein product [Vitis vinifera]	0.930	0.310	0.517	7e-33
388508692	370	unknown [Lotus japonicus]	0.914	0.318	0.528	7e-33
225444889	368	PREDICTED: nucleosome assembly protein 1	0.930	0.326	0.517	8e-33
356556775	366	PREDICTED: nucleosome assembly protein 1	0.906	0.319	0.518	1e-32
334184306	372	nucleosome assembly protein 1;2 [Arabido	0.930	0.322	0.514	3e-32
15224782	379	nucleosome assembly protein 1;2 [Arabido	0.930	0.316	0.514	3e-32

>gi|353441156|gb|AEQ94162.1| nucleosome assembly protein 1 [Elaeis guineensis]

 Score =  151 bits (381), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 75/139 (53%), Positives = 91/139 (65%), Gaps = 20/139 (14%)

Query: 4   SEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTF 63
           +EDKA  EKGVPDFW  AM+++  L + I   D+GALK+L DIKWCRI++ +GFKLEF F
Sbjct: 49  AEDKANGEKGVPDFWLTAMKTNEVLAEEITERDEGALKFLKDIKWCRIDNPKGFKLEFFF 108

Query: 64  GPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER------------- 110
             NPYFKNSVL KTY MIDE D VLE+AIGT I WYPG+C  +K  +             
Sbjct: 109 DTNPYFKNSVLTKTYHMIDEDDPVLEKAIGTEIEWYPGKCLTQKVLKKKPRKGSKNTKPM 168

Query: 111 -------SFFNFFEPLEVP 122
                  SFFNFF P ++P
Sbjct: 169 TKTENCDSFFNFFTPPQIP 187

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|372477765|gb|AEX97077.1| nucleosome assembly protein [Malus x domestica]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 74/149 (49%), Positives = 93/149 (62%), Gaps = 20/149 (13%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
           M Q   KA +EKGVPDFW  AM+++  L + I   D+GALK+L DIKW RI+D +GFKLE
Sbjct: 112 MDQDGGKAGEEKGVPDFWLTAMKTNDVLSEEITERDEGALKHLKDIKWSRIDDPKGFKLE 171

Query: 61  FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER---------- 110
           F F  NPYFKNS+L KTY M+DE + +LE+AIGT I WYPG+C  +K  +          
Sbjct: 172 FFFDTNPYFKNSILTKTYHMVDENEPILEKAIGTEIEWYPGKCLTQKLLKKKPRKGSKNA 231

Query: 111 ----------SFFNFFEPLEVPTDVEGFE 129
                     SFFNFF P EVP + E  +
Sbjct: 232 KPVTKTEDCASFFNFFSPPEVPKEDEDLD 260

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087993|ref|XP_002308283.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222854259|gb|EEE91806.1| nucleosome/chromatin assembly factor group [Populus trichocarpa]

 Score =  145 bits (366), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/142 (54%), Positives = 91/142 (64%), Gaps = 20/142 (14%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
           M Q   KA +EKGVPDFW +AM+++  L + I   D+GALKYL DIKWCRI D +GFKLE
Sbjct: 112 MDQDGGKAGEEKGVPDFWLVAMKNNEVLAEEITERDEGALKYLKDIKWCRIEDPKGFKLE 171

Query: 61  FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCW---------------- 104
           F F  NPYFKNSVL KTY MIDE + +LE+AIGT I WYPG+C                 
Sbjct: 172 FFFDTNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNA 231

Query: 105 --IEKAE--RSFFNFFEPLEVP 122
             I K E   SFFNFF P +VP
Sbjct: 232 KPITKTEDCESFFNFFSPPQVP 253

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359482848|ref|XP_002280211.2| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Vitis vinifera] gi|297743095|emb|CBI35962.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (366), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 73/142 (51%), Positives = 92/142 (64%), Gaps = 20/142 (14%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
           M Q EDKAT+EKGVP+FW  AM+++  L + I   D+GALKYL DIKW RI++ +GFKLE
Sbjct: 120 MDQEEDKATEEKGVPNFWLTAMKTNEVLAEEISERDEGALKYLKDIKWYRIDNPKGFKLE 179

Query: 61  FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER---------- 110
           F F  NPYFKNS+L KTY MID+ + +LE+AIGT I WYPG+   +K  +          
Sbjct: 180 FYFDANPYFKNSILTKTYHMIDDDEPILEKAIGTEIEWYPGKSLTQKLLKKKPRKGSKNA 239

Query: 111 ----------SFFNFFEPLEVP 122
                     SFFNFF P +VP
Sbjct: 240 KPITKTENCESFFNFFNPPQVP 261

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 92/141 (65%), Gaps = 21/141 (14%)

Query: 2   VQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEF 61
           +  EDKA +EKGVPDFW  AM+++  L + I   D+GALKY+ DIKWCRI++ +GFKLEF
Sbjct: 134 MDQEDKA-EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEF 192

Query: 62  TFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER----------- 110
            F  NPYFKNSVL KTY MIDE + +LE+AIGT I W+PG+C  +K  +           
Sbjct: 193 FFDTNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWFPGKCLTQKLLKKKPRKGSKNAK 252

Query: 111 ---------SFFNFFEPLEVP 122
                    SFFNFF P +VP
Sbjct: 253 PITKTESCESFFNFFSPPQVP 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508692|gb|AFK42412.1| unknown [Lotus japonicus]

 Score =  145 bits (365), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 73/138 (52%), Positives = 91/138 (65%), Gaps = 20/138 (14%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFG 64
           EDKA +EKGVP+FW  AM+ +  L + I   D+GALKYL DIKWC++++ +GFKL+F F 
Sbjct: 114 EDKAAEEKGVPNFWLNAMKINETLAEEITERDEGALKYLQDIKWCKVDEPKGFKLDFYFD 173

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCW------------------IE 106
            NPYFKNSVL KTY MIDE D +LE+AIGT I W+PG+C                   I 
Sbjct: 174 SNPYFKNSVLTKTYHMIDEEDPILEKAIGTEIEWHPGKCLTQKILKKKPKKGSKNTKPIT 233

Query: 107 KAER--SFFNFFEPLEVP 122
           K E+  SFFNFF P +VP
Sbjct: 234 KTEKCESFFNFFNPPQVP 251

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera]

 Score =  144 bits (364), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 73/141 (51%), Positives = 92/141 (65%), Gaps = 21/141 (14%)

Query: 2   VQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEF 61
           +  EDKA +EKGVPDFW  AM+++  L + I   D+GALKY+ DIKWCRI++ +GFKLEF
Sbjct: 116 MDQEDKA-EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEF 174

Query: 62  TFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER----------- 110
            F  NPYFKNSVL KTY MIDE + +LE+AIGT I W+PG+C  +K  +           
Sbjct: 175 FFDTNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWFPGKCLTQKLLKKKPRKGSKNAK 234

Query: 111 ---------SFFNFFEPLEVP 122
                    SFFNFF P +VP
Sbjct: 235 PITKTESCESFFNFFSPPQVP 255

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356556775|ref|XP_003546698.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Glycine max]

 Score =  144 bits (364), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 71/137 (51%), Positives = 91/137 (66%), Gaps = 20/137 (14%)

Query: 6   DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGP 65
           +KA ++KGVP+FW  AM+++  L + I   D+G+LKYL DIKWCRI+D +GFKLEF F  
Sbjct: 115 NKAAEDKGVPEFWLTAMKTNEALAEEITERDEGSLKYLKDIKWCRIDDPKGFKLEFYFDS 174

Query: 66  NPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCW------------------IEK 107
           NPYFKNSVL KTY MI++ D +LE+AIGT I W+PG+C                   I K
Sbjct: 175 NPYFKNSVLTKTYHMIEDDDPILEKAIGTEIEWHPGKCLTQKILKKKPSKGSKNAKPITK 234

Query: 108 AER--SFFNFFEPLEVP 122
            E+  SFFNFF P +VP
Sbjct: 235 TEKCESFFNFFNPPQVP 251

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|334184306|ref|NP_001189553.1| nucleosome assembly protein 1;2 [Arabidopsis thaliana] gi|330251793|gb|AEC06887.1| nucleosome assembly protein 1;2 [Arabidopsis thaliana]

 Score =  143 bits (360), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 90/140 (64%), Gaps = 20/140 (14%)

Query: 3   QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFT 62
           Q EDK+ +EKGVPDFW IA++++    + I   D+GALKYL DIKW R+ + +GFKLEF 
Sbjct: 115 QGEDKSAEEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFF 174

Query: 63  FGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCW------------------ 104
           F  NPYFKN+VL KTY MIDE + +LE+A+GT I WYPG+C                   
Sbjct: 175 FDQNPYFKNTVLTKTYHMIDEDEPILEKALGTEIEWYPGKCLTQKILKKKPKKGSKNTKP 234

Query: 105 IEKAE--RSFFNFFEPLEVP 122
           I K E   SFFNFF P +VP
Sbjct: 235 ITKTEDCESFFNFFSPPQVP 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15224782|ref|NP_179538.1| nucleosome assembly protein 1;2 [Arabidopsis thaliana] gi|4191778|gb|AAD10147.1| putative nucleosome assembly protein [Arabidopsis thaliana] gi|20466610|gb|AAM20622.1| putative nucleosome assembly protein [Arabidopsis thaliana] gi|27311993|gb|AAO00962.1| putative nucleosome assembly protein [Arabidopsis thaliana] gi|330251791|gb|AEC06885.1| nucleosome assembly protein 1;2 [Arabidopsis thaliana]

 Score =  142 bits (359), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/140 (51%), Positives = 90/140 (64%), Gaps = 20/140 (14%)

Query: 3   QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFT 62
           Q EDK+ +EKGVPDFW IA++++    + I   D+GALKYL DIKW R+ + +GFKLEF 
Sbjct: 115 QGEDKSAEEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFF 174

Query: 63  FGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCW------------------ 104
           F  NPYFKN+VL KTY MIDE + +LE+A+GT I WYPG+C                   
Sbjct: 175 FDQNPYFKNTVLTKTYHMIDEDEPILEKALGTEIEWYPGKCLTQKILKKKPKKGSKNTKP 234

Query: 105 IEKAE--RSFFNFFEPLEVP 122
           I K E   SFFNFF P +VP
Sbjct: 235 ITKTEDCESFFNFFSPPQVP 254

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
TAIR|locus:2050424	379	NAP1;2 "AT2G19480" [Arabidopsi	0.813	0.277	0.580	1e-36
TAIR|locus:2120785	372	NAP1;1 "AT4G26110" [Arabidopsi	0.813	0.282	0.542	3.9e-35
TAIR|locus:2164595	374	NAP1;3 "AT5G56950" [Arabidopsi	0.829	0.286	0.532	2.7e-34
WB|WBGene00017075	316	nap-1 [Caenorhabditis elegans	0.751	0.306	0.396	1.2e-17
UNIPROTKB|F1P1B7	376	NAP1L4 "Uncharacterized protei	0.658	0.226	0.428	4.1e-16
UNIPROTKB|G4MND6	404	MGG_06924 "Nucleosome assembly	0.744	0.237	0.371	1.5e-15
UNIPROTKB|H0YCI4	204	NAP1L4 "Nucleosome assembly pr	0.565	0.357	0.441	2.2e-15
POMBASE|SPCC364.06	393	nap1 "nucleosome assembly prot	0.666	0.218	0.395	4.3e-15
UNIPROTKB|E1BZS2	393	NAP1L1 "Uncharacterized protei	0.643	0.211	0.388	6.4e-15
ASPGD|ASPL0000075565	409	AN8863 [Emericella nidulans (t	0.751	0.237	0.378	7.2e-15

TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 1.0e-36, Sum P(2) = 1.0e-36
 Identities = 61/105 (58%), Positives = 79/105 (75%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFT 62
             Q EDK+ +EKGVPDFW IA++++    + I   D+GALKYL DIKW R+ + +GFKLEF 
Sbjct:   115 QGEDKSAEEKGVPDFWLIALKNNEITAEEITERDEGALKYLKDIKWSRVEEPKGFKLEFF 174

Query:    63 FGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEK 107
             F  NPYFKN+VL KTY MIDE + +LE+A+GT I WYPG+C  +K
Sbjct:   175 FDQNPYFKNTVLTKTYHMIDEDEPILEKALGTEIEWYPGKCLTQK 219

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0046686 "response to cadmium ion" evidence=IEP

GO:0005886 "plasma membrane" evidence=IDA

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)]

 Score = 336 (123.3 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
 Identities = 57/105 (54%), Positives = 78/105 (74%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFT 62
             Q E+K  +EKGVP FW  A++++  + + +   D+GALKYL DIKWC+I + +GFKLEF 
Sbjct:   116 QGEEKTAEEKGVPSFWLTALKNNDVISEEVTERDEGALKYLKDIKWCKIEEPKGFKLEFF 175

Query:    63 FGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEK 107
             F  NPYFKN+VL K+Y MIDE + +LE+A+GT I WYPG+C  +K
Sbjct:   176 FDTNPYFKNTVLTKSYHMIDEDEPLLEKAMGTEIDWYPGKCLTQK 220

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
 Identities = 57/107 (53%), Positives = 77/107 (71%)

Query:     1 MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLE 60
             M Q ++K  +EKGVP FW  A++++  + + I   D+GAL YL DIKWC+I + +GFKLE
Sbjct:   113 MDQGDEKTAEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLE 172

Query:    61 FTFGPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEK 107
             F F  NPYFKN++L K Y MIDE + +LE+AIGT I WYPG+C  +K
Sbjct:   173 FFFDQNPYFKNTLLTKAYHMIDEDEPLLEKAIGTEIDWYPGKCLTQK 219

GO:0003677 "DNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA

GO:0006334 "nucleosome assembly" evidence=IEA;ISS

GO:0009294 "DNA mediated transformation" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0006281 "DNA repair" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

WB|WBGene00017075 nap-1 [Caenorhabditis elegans (taxid:6239)]

 Score = 186 (70.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
 Identities = 42/106 (39%), Positives = 56/106 (52%)

Query:    12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKN 71
             KG+ DFW  A+ +H  + + I  HD   L YLTD+      D  GFK+EF F  NPYFKN
Sbjct:   111 KGIKDFWLTALRTHDLVAEAIEEHDVPILSYLTDVTTAASKDPAGFKIEFHFATNPYFKN 170

Query:    72 SVLEKTYRM-ID-ETDIVLE-------EAIGTVIHWYPGQCWIEKA 108
              VL KTY +  D + +  L+        A+G  I W  G+   +KA
Sbjct:   171 QVLTKTYLLGFDPDAEAPLQFDGPHVIRAVGDTIEWEDGKNVTKKA 216

GO:0005634 "nucleus" evidence=IEA;IDA

GO:0006334 "nucleosome assembly" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0002009 "morphogenesis of an epithelium" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0040035 "hermaphrodite genitalia development" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0010171 "body morphogenesis" evidence=IMP

GO:0016246 "RNA interference" evidence=IMP

GO:0015485 "cholesterol binding" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0008134 "transcription factor binding" evidence=IPI

UNIPROTKB|F1P1B7 NAP1L4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 171 (65.3 bits), Expect = 4.1e-16, Sum P(2) = 4.1e-16
 Identities = 39/91 (42%), Positives = 51/91 (56%)

Query:     1 MVQSEDKATKE----KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDS 54
             +V  E+KA  E    KG+PDFWF    +   L + +  +D+  LK+L DIK  +      
Sbjct:   143 VVVIEEKAEAEEINVKGIPDFWFTIFRNVDMLSELVQEYDEPILKHLQDIKVKFSEPGQP 202

Query:    55 EGFKLEFTFGPNPYFKNSVLEKTYRMIDETD 85
               F LEF FGPN YF N+VL KTY+M  E D
Sbjct:   203 MSFSLEFHFGPNDYFSNTVLTKTYKMKSEPD 233

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

UNIPROTKB|G4MND6 MGG_06924 "Nucleosome assembly protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 169 (64.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
 Identities = 39/105 (37%), Positives = 58/105 (55%)

Query:     2 VQSEDKATKE----KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGF 57
             V++E+ A  E    KG+P+FW  AM++   L + I   D+ ALK+LTDI+   + D  GF
Sbjct:   160 VKTEETAASEASDVKGIPEFWLSAMKNQISLAEMITDRDEQALKHLTDIRMEYL-DKPGF 218

Query:    58 KLEFTFGPNPYFKNSVLEKTYRMIDET----DIVLEEAIGTVIHW 98
             +L F F  N +F N  + KTY   +E+    D + + A G  I W
Sbjct:   219 RLIFEFSENEFFSNKTISKTYYYQNESGYGGDFIYDHAEGDKIEW 263

GO:0003674 "molecular_function" evidence=ND

UNIPROTKB|H0YCI4 NAP1L4 "Nucleosome assembly protein 1-like 4" [Homo sapiens (taxid:9606)]

 Score = 154 (59.3 bits), Expect = 2.2e-15, Sum P(2) = 2.2e-15
 Identities = 34/77 (44%), Positives = 45/77 (58%)

Query:    12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE---GFKLEFTFGPNPY 68
             KG+P+FWF    +   L + +  +D+  LK+L DIK  + +D      F LEF F PN Y
Sbjct:    13 KGIPEFWFTIFRNVDMLSELVQEYDEPILKHLQDIK-VKFSDPGQPMSFVLEFHFEPNDY 71

Query:    69 FKNSVLEKTYRMIDETD 85
             F NSVL KTY+M  E D
Sbjct:    72 FTNSVLTKTYKMKSEPD 88

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

POMBASE|SPCC364.06 nap1 "nucleosome assembly protein Nap1" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 172 (65.6 bits), Expect = 4.3e-15, Sum P(2) = 4.3e-15
 Identities = 36/91 (39%), Positives = 55/91 (60%)

Query:    12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEFTFGPNPYFKN 71
             KG+P+FW  AM++   L + I   D+GAL +L DI+   + +  GFKLEF F  NP+F N
Sbjct:   162 KGIPEFWLTAMKNVLSLSEMITPEDEGALSHLVDIRISYM-EKPGFKLEFEFAENPFFTN 220

Query:    72 SVLEKTYRMIDET---DIVL-EEAIGTVIHW 98
              +L KTY  ++E+   ++ L + A G  + W
Sbjct:   221 KILTKTYYYMEESGPSNVFLYDHAEGDKVDW 251

GO:0000790 "nuclear chromatin" evidence=IC

GO:0005515 "protein binding" evidence=IPI

GO:0005829 "cytosol" evidence=IDA

GO:0006334 "nucleosome assembly" evidence=ISO

GO:0006336 "DNA replication-independent nucleosome assembly" evidence=IDA

GO:0006337 "nucleosome disassembly" evidence=ISO

GO:0006366 "transcription from RNA polymerase II promoter" evidence=NAS

GO:0006606 "protein import into nucleus" evidence=ISO

GO:0007089 "traversing start control point of mitotic cell cycle" evidence=IGI;IMP

GO:0042393 "histone binding" evidence=ISO

UNIPROTKB|E1BZS2 NAP1L1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 162 (62.1 bits), Expect = 6.4e-15, Sum P(2) = 6.4e-15
 Identities = 33/85 (38%), Positives = 46/85 (54%)

Query:     3 QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLE 60
             + +++    KG+P+FW    ++   L   +  HD+  LK+L DIK  +  +     F LE
Sbjct:   157 KKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSEVGQPMSFTLE 216

Query:    61 FTFGPNPYFKNSVLEKTYRMIDETD 85
             F F PN YF N VL KTYRM  E D
Sbjct:   217 FHFEPNDYFTNEVLTKTYRMRSEPD 241

GO:0005634 "nucleus" evidence=IEA

GO:0006334 "nucleosome assembly" evidence=IEA

ASPGD|ASPL0000075565 AN8863 [Emericella nidulans (taxid:162425)]

 Score = 166 (63.5 bits), Expect = 7.2e-15, Sum P(2) = 7.2e-15
 Identities = 39/103 (37%), Positives = 55/103 (53%)

Query:     3 QSED-KATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEGFKLEF 61
             Q ED K +   G+P+FW  AM++   L + I   D+ ALK+L DI+   + D  GF+L F
Sbjct:   163 QGEDEKESAVTGIPEFWLSAMKNQISLAEMITDKDEEALKHLIDIRMEYL-DRPGFRLIF 221

Query:    62 TFGPNPYFKNSVLEKTYRMIDET----DIVLEEAIGTVIHWYP 100
              F  N +F N  + KTY   +E     D + + A GT I W P
Sbjct:   222 EFSENEFFTNKTISKTYFYKEENGYGGDFIYDHAEGTKIDWKP 264

GO:0007089 "traversing start control point of mitotic cell cycle" evidence=IEA

GO:0006336 "DNA replication-independent nucleosome assembly" evidence=IEA

GO:0097308 "cellular response to farnesol" evidence=IEP

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00034186001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (375 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00020673001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (607 aa)				•	•				0.465
	GSVIVG00021307001	SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (586 aa)				•					0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	129
pfam00956	236	pfam00956, NAP, Nucleosome assembly protein (NAP)	3e-38
PTZ00007	337	PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr	1e-22
PTZ00008	185	PTZ00008, PTZ00008, (NAP-S) nucleosome assembly pr	0.004

>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP)

 Score =  128 bits (324), Expect = 3e-38
 Identities = 57/142 (40%), Positives = 75/142 (52%), Gaps = 22/142 (15%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTF 63
           E++  +EKG+P FW  A+++H  L + I   D+ ALKYLTDI+   + D  +GFKL F F
Sbjct: 57  EEEEPEEKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLIFHF 116

Query: 64  GPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER------------- 110
            PNPYF N VL KTY + DE D    ++ GT I W  G+    K  +             
Sbjct: 117 APNPYFTNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQTRT 176

Query: 111 --------SFFNFFEPLEVPTD 124
                   SFFNFF P +VP D
Sbjct: 177 ITKTVPAESFFNFFSPPKVPDD 198

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236

>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional

 Score = 89.9 bits (223), Expect = 1e-22
 Identities = 51/138 (36%), Positives = 69/138 (50%), Gaps = 26/138 (18%)

Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIK--WCRINDSEGFKLEFTFGPNPYFK 70
           G+P FW  AM++++ L   I  HD+  L YL+DI   +   N  EGF L FTF PNP+F 
Sbjct: 98  GLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFS 157

Query: 71  NSVLEKTYRMI---DETDIVLEEAIGTVIHWYPG----QCWIEKAER------------- 110
           N+VL KTY M     + + +L   + T I W  G    +  + K +R             
Sbjct: 158 NTVLTKTYHMKVLDGDDEPLLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTET 217

Query: 111 ----SFFNFFEPLEVPTD 124
               SFFNFF   EVP+D
Sbjct: 218 VDRESFFNFFTSHEVPSD 235

Length = 337

>gnl|CDD|185394 PTZ00008, PTZ00008, (NAP-S) nucleosome assembly protein-S; Provisional

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 28/118 (23%), Positives = 44/118 (37%), Gaps = 19/118 (16%)

Query: 14  VPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEG-FKLEFTFGP--NPYFK 70
           +P FW   +   H     +V  D   L++L  I      D+ G +K+   F      + +
Sbjct: 36  IPGFWADTL-RRHPALSYLVPEDIDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFME 94

Query: 71  NSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER------------SFFNFF 116
             VL K     +  + V+E    T I W  G+  I  AE+            S F +F
Sbjct: 95  PLVLVKHVIFKNNQEKVVE---VTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWF 149

Length = 185

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
KOG1507	358	consensus Nucleosome assembly protein NAP-1 [Chrom	100.0
PTZ00008	185	(NAP-S) nucleosome assembly protein-S; Provisional	100.0
PTZ00007	337	(NAP-L) nucleosome assembly protein -L; Provisiona	100.0
PF00956	244	NAP: Nucleosome assembly protein (NAP); InterPro:	100.0
KOG1508	260	consensus DNA replication factor/protein phosphata	99.83

>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=100.00  E-value=2.4e-39  Score=261.66  Aligned_cols=116  Identities=46%  Similarity=0.842  Sum_probs=106.5

Q ss_pred             cccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCCC-ceEEEEEeCCCCCccCcEEEEEEEec---cCC
Q 032992            9 TKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMI---DET   84 (129)
Q Consensus         9 ~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~~-~f~i~F~F~~NpyF~N~~L~K~~~~~---~~~   84 (129)
                      +..||||+||++||+|+++++++|+++|++||+||+||++.+.+++. +|+|.|+|.+||||+|++|||+|+++   +..
T Consensus       155 ~d~KGIP~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~  234 (358)
T KOG1507|consen  155 EDPKGIPDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDED  234 (358)
T ss_pred             ccccCCchHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCc
Confidence            46799999999999999999999999999999999999999999885 99999999999999999999999998   444


Q ss_pred             Ce------eeeeeeeeeeEecCCCCccccc---------------------ccceeeccCCCCCCCC
Q 032992           85 DI------VLEEAIGTVIHWYPGQCWIEKA---------------------ERSFFNFFEPLEVPTD  124 (129)
Q Consensus        85 ~~------~~~~~~~t~I~Wk~gk~~t~~~---------------------~~SFF~~F~~~~~p~~  124 (129)
                      +|      .+..|+||.|+|++|||||++.                     ..||||||+||.+|+.
T Consensus       235 ~P~~~~G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ipd~  301 (358)
T KOG1507|consen  235 DPFAFDGPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIPDE  301 (358)
T ss_pred             CCcccCCceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCCcc
Confidence            44      6789999999999999999884                     2699999999999933

>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional

Probab=100.00  E-value=7.7e-39  Score=242.46  Aligned_cols=115  Identities=22%  Similarity=0.362  Sum_probs=102.3

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEE-eCCCCceEEEEEeCC--CCCccCcEEEEEEEecc
Q 032992            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCR-INDSEGFKLEFTFGP--NPYFKNSVLEKTYRMID   82 (129)
Q Consensus         6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~-~~d~~~f~i~F~F~~--NpyF~N~~L~K~~~~~~   82 (129)
                      .|+++|+|||+||++||+||+.++ +|+++|+++|+||+||+|+. .++++||+|+|+|.+  ||||+|++|+|+|+++.
T Consensus        28 kR~~II~gIP~FW~~vl~n~~~~~-~I~~~D~~~L~~L~dI~ve~~~~~~~~f~i~F~F~~~~N~yF~n~~LtK~y~~~~  106 (185)
T PTZ00008         28 KRQEIIEKIPGFWADTLRRHPALS-YLVPEDIDILEHLKKIDLEDNLDNNGSYKITLIFDEKAKEFMEPLVLVKHVIFKN  106 (185)
T ss_pred             HHHHHHhcCccHHHHHHHcCcccc-ccCHHHHHHHHHhCceEEEEeecCCCCEEEEEEECCCCCCCcCCCEEEEEEEEec
Confidence            578999999999999999999999 99999999999999999997 455569999999975  89999999999999987


Q ss_pred             CCCeeeeeeeeeeeEecCCCCccccc------------ccceeeccCCCCCCCC
Q 032992           83 ETDIVLEEAIGTVIHWYPGQCWIEKA------------ERSFFNFFEPLEVPTD  124 (129)
Q Consensus        83 ~~~~~~~~~~~t~I~Wk~gk~~t~~~------------~~SFF~~F~~~~~p~~  124 (129)
                      +++.   .+++|+|+||+|+|+|++.            ..|||+||++++.|++
T Consensus       107 ~~~~---~~~~t~I~Wk~gkn~t~~~~kk~~~~~~~~~~~SFF~fF~~~~~~~~  157 (185)
T PTZ00008        107 NQEK---VVEVTKIKWKEGKSPIAAAEKARSDLDDECIVWSIFEWFTEEEWQDR  157 (185)
T ss_pred             CCCc---eeeeeecccCCCCCcceeeeeccCccccCCCCCChhhcCCCCcccCc
Confidence            6543   3689999999999998863            2699999999877764

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional

Probab=100.00  E-value=1.5e-38  Score=258.77  Aligned_cols=114  Identities=43%  Similarity=0.764  Sum_probs=102.3

Q ss_pred             CCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCC--CceEEEEEeCCCCCccCcEEEEEEEeccC---CCe
Q 032992           12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS--EGFKLEFTFGPNPYFKNSVLEKTYRMIDE---TDI   86 (129)
Q Consensus        12 ~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~--~~f~i~F~F~~NpyF~N~~L~K~~~~~~~---~~~   86 (129)
                      ++||+||++||+||+.++.+|+++|+++|+||+||+|++..+.  ++|+|+|+|++||||+|++|+|+|++...   ++|
T Consensus        97 ~gIP~FWl~vL~Nh~~ls~~I~e~De~iL~~L~dI~ve~~~~~~~~gf~I~F~F~~NpyF~N~vLtK~y~~~~~d~~~~p  176 (337)
T PTZ00007         97 PGLPQFWLTAMKNNNTLGSAIEEHDEPILSYLSDISCEYTEPNKQEGFILVFTFAPNPFFSNTVLTKTYHMKVLDGDDEP  176 (337)
T ss_pred             CCcccHHHHHHHcCccHhhhCCHHHHHHHHhhCceEEEEccCCCCCceEEEEEeCCCCCCCCCeEEEEEEeecCCCCCCc
Confidence            3899999999999999999999999999999999999987654  69999999999999999999999999642   246


Q ss_pred             eeeeeeeeeeEecCCCCccccc---------------------ccceeeccCCCCCCCCC
Q 032992           87 VLEEAIGTVIHWYPGQCWIEKA---------------------ERSFFNFFEPLEVPTDV  125 (129)
Q Consensus        87 ~~~~~~~t~I~Wk~gk~~t~~~---------------------~~SFF~~F~~~~~p~~~  125 (129)
                      ++..+++|+|+||+|++||++.                     ..|||+||+++.+|+.+
T Consensus       177 ~~~~~~~t~I~WK~GkdlT~k~v~kKqr~K~~~~~r~v~~~~~~~SFFnfF~p~~~p~~~  236 (337)
T PTZ00007        177 LLSNTVATEIDWKQGKDVTKKVVTKKQRHKKTKETRTVTETVDRESFFNFFTSHEVPSDE  236 (337)
T ss_pred             eeecceeeeceeeCCCCchhhhcccccccccCCCceeeccCCCCCChHHhcCCCCCCccc
Confidence            6678999999999999998742                     16999999999999765

>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus

Probab=100.00  E-value=3.2e-37  Score=241.23  Aligned_cols=116  Identities=41%  Similarity=0.767  Sum_probs=96.5

Q ss_pred             cCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCC-CCceEEEEEeCCCCCccCcEEEEEEEeccCCCe---
Q 032992           11 EKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGPNPYFKNSVLEKTYRMIDETDI---   86 (129)
Q Consensus        11 i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d-~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~~~~---   86 (129)
                      .++||+||++||+||+.++.+|++.|.++|+||+||+|++..+ .++|+|+|+|++||||+|++|+|+|++..++++   
T Consensus        66 ~~gIP~FW~~vl~n~~~~~~~i~~~D~~iL~~L~dI~v~~~~~~~~~f~l~F~F~~NpyF~n~~L~K~~~~~~~~~~~~~  145 (244)
T PF00956_consen   66 PKGIPGFWLTVLKNHPLLAELISEEDEEILSYLTDIRVEYFEDNPRGFKLTFHFKPNPYFSNTVLTKEYYLKKEGDEEDP  145 (244)
T ss_dssp             STTSTTHHHHHHHTSHHHHTTSSHHHHHHHTTEEEEEEEECCSSTTEEEEEEEECSTSSBSESEEEEEEEEESSSSTTTT
T ss_pred             ccCCCCccccccccCchhhcccccccHHHHHhhhheEEEecccCCcceEEEEEECCCCcccCCEEEEEEEEeccCCCCCC
Confidence            6669999999999999999999999999999999999999887 569999999999999999999999999976541   


Q ss_pred             -eeeeeeeeeeEecCCCCccccc---------------------ccceeeccCCCCCCCCCCC
Q 032992           87 -VLEEAIGTVIHWYPGQCWIEKA---------------------ERSFFNFFEPLEVPTDVEG  127 (129)
Q Consensus        87 -~~~~~~~t~I~Wk~gk~~t~~~---------------------~~SFF~~F~~~~~p~~~~~  127 (129)
                       . .++++|+|+||+|++++++.                     .+|||+||+++.+|+++++
T Consensus       146 ~~-~~~~~t~I~Wk~gkd~t~~~~~~k~~~k~~~~~~~~~~~~~~~SFF~~F~~~~~~~~~~~  207 (244)
T PF00956_consen  146 DE-LKSESTPIDWKPGKDLTKKEVKKKQKNKGTKQVRTITKEVPTESFFNFFSPPKLPDEEDD  207 (244)
T ss_dssp             -E-EEEEE---EBSTTTCTTCCCCECECCSCCCH-ECCCCCCCC--SGGGGSS-B-S--TTTS
T ss_pred             Cc-ceeeeecccccCCCCccchhhhhcccccccccccceeecccCcchhhhcccCCCCccccc
Confidence             2 47999999999999998874                     1499999999988864443

The proteins may be involved in regulating gene expression and therefore cellular differentiation [, ]. The centrosomal protein c-Nap1, also known as Cep250, has been implicated in the cell-cycle-regulated cohesion of microtubule-organizing centres. This 281 kDa protein consists mainly of domains predicted to form coiled coil structures. The C-terminal region defines a novel histone-binding domain that is responsible for targeting CNAP1, and possibly condensin, to mitotic chromosomes []. During interphase, C-Nap1 localizes to the proximal ends of both parental centrioles, but it dissociates from these structures at the onset of mitosis. Re-association with centrioles then occurs in late telophase or at the very beginning of G1 phase, when daughter cells are still connected by post-mitotic bridges. Electron microscopic studies performed on isolated centrosomes suggest that a proteinaceous linker connects parental centrioles and C-Nap1 may be part of a linker structure that assures the cohesion of duplicated centrosomes during interphase, but that is dismantled upon centrosome separation at the onset of mitosis []. ; GO: 0006334 nucleosome assembly, 0005634 nucleus; PDB: 2E50_Q 2Z2R_A 2AYU_A 3Q66_A 3C9B_A 3Q68_B 3Q33_B 2ZD7_B 3DM7_A 3C9D_A ....

>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair]

Probab=99.83  E-value=4e-22  Score=158.02  Aligned_cols=117  Identities=26%  Similarity=0.516  Sum_probs=106.0

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCCC-ceEEEEEeCCCCCccCcEEEEEEEeccCC
Q 032992            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET   84 (129)
Q Consensus         6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~~-~f~i~F~F~~NpyF~N~~L~K~~~~~~~~   84 (129)
                      .++.+++.||+||.+++.+||.++.++.+.|++++.||..+.|+.+.+.. ||++.|+|.+||||+|.+++|+|++...+
T Consensus        72 ~r~~ii~~i~~fw~~~~~~hp~~~~~i~~~~~e~~~~l~~~~v~e~~~~~sg~~~~~~f~~ney~~~~~~~ke~~~~~~~  151 (260)
T KOG1508|consen   72 KRRELIKEIPNFWVTAFLNHPTLSEWIPEEDEEALHYLHNLEVEELGDIKSGYRIKFSFEINEYFTNDLLVKEFQYKESG  151 (260)
T ss_pred             hhhHHHhhcccceeEEEecCCcHhhhhhhhhhhhhccchHHHHHHhccccccCeeeeeeccchhcccchhceeeeeeccc
Confidence            46789999999999999999999999999999999999999999988876 99999999999999999999999999888


Q ss_pred             CeeeeeeeeeeeEecCCCCccc--------cc----ccceeeccCCCCCCCCC
Q 032992           85 DIVLEEAIGTVIHWYPGQCWIE--------KA----ERSFFNFFEPLEVPTDV  125 (129)
Q Consensus        85 ~~~~~~~~~t~I~Wk~gk~~t~--------~~----~~SFF~~F~~~~~p~~~  125 (129)
                      .+.   +.+|+|.|+.|+++..        ..    ..|||.||+.+.+++.|
T Consensus       152 ~~~---s~~t~i~w~~~~~~~~~~~~~~~~~k~~~~~~s~f~wf~~~~~~~~d  201 (260)
T KOG1508|consen  152 KPS---SESTPISWKEGKPLPNPVKRGELKNKNGDGPKSFFEWFSDTSLKEFD  201 (260)
T ss_pred             Ccc---cccccccccCCCCCcccccccccccccCcccccHHHHHHhccCCCcc
Confidence            764   7999999999988652        11    38999999999998854

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
3hfd_A	276	Nucleosome Assembly Protein 1 From Plasmodium Knowl		8e-13
3fs3_A	359	Crystal Structure Of Malaria Parasite Nucleosome As		7e-12
3gyv_A	249	Crystal Structure Of Nucleosome Assembly Protein Fr		8e-12
2z2r_A	292	Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng		2e-08
2ayu_A	417	The Structure Of Nucleosome Assembly Protein Sugges		4e-08
2e50_A	225	Crystal Structure Of SetTAF-1betaINHAT Length = 225		6e-08

>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276

Iteration: 1
 Score = 68.6 bits (166), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 47/139 (33%), Positives = 66/139 (47%), Gaps = 28/139 (20%)
Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS----EGFKLEFTFGPNPY 68
            +P+FW  A+ +++ +   I  HD+  L YL DI+   I  +    EGF L F F PNP+
Sbjct: 76  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFHFAPNPF 135
Query: 69  FKNSVLEKTYRM--ID-ETDIVLEEAIGTVIHWYPGQCWIEK------------------ 107
           F NSVL KTY M  +D + + VL     TVI WY  +  ++K                  
Sbjct: 136 FSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQ 195
Query: 108 ---AERSFFNFFEPLEVPT 123
                 SFF+FF   +VP 
Sbjct: 196 QTVNRDSFFHFFTSHKVPN 214

>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359

Iteration: 1
 Score = 65.5 bits (158), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 28/139 (20%)
Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS----EGFKLEFTFGPNPY 68
            +P+FW  A+ +++ +   I  HD+  L YL DI+   I  +    EGF L F F  NP+
Sbjct: 110 NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 169
Query: 69  FKNSVLEKTYRM--ID-ETDIVLEEAIGTVIHWYPGQCWIEK------------------ 107
           F NSVL KTY M  +D + + VL     TVI WY  +  ++K                  
Sbjct: 170 FSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQ 229
Query: 108 ---AERSFFNFFEPLEVPT 123
                 SFF+FF   +VP 
Sbjct: 230 QTVNRDSFFHFFTSHKVPN 248

>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 46/139 (33%), Positives = 65/139 (46%), Gaps = 28/139 (20%)
Query: 13  GVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS----EGFKLEFTFGPNPY 68
            +P+FW  A+ +++ +   I  HD+  L YL DI+   I  +    EGF L F F  NP+
Sbjct: 66  NLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPF 125
Query: 69  FKNSVLEKTYRM--ID-ETDIVLEEAIGTVIHWYPGQCWIEK------------------ 107
           F NSVL KTY M  +D + + VL     TVI WY  +  ++K                  
Sbjct: 126 FSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQ 185
Query: 108 ---AERSFFNFFEPLEVPT 123
                 SFF+FF   +VP 
Sbjct: 186 QTVNRDSFFHFFTSHKVPN 204

>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292

Iteration: 1
 Score = 53.9 bits (128), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 39/111 (35%), Positives = 52/111 (46%), Gaps = 13/111 (11%)
Query: 1   MVQSEDKATKE------KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS 54
           +V  E+KA  +      KG+P FW  A+E+   +   I   D   L+YL DI    + D 
Sbjct: 93  LVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDG 152
Query: 55  E-GFKLEFTF--GPNPYFKNSVLEKTYRMIDET----DIVLEEAIGTVIHW 98
             GFKL F F    NP+F N +L KTY    E     D + + A G  I W
Sbjct: 153 RPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISW 203

>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417

Iteration: 1
 Score = 53.1 bits (126), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/156 (31%), Positives = 65/156 (41%), Gaps = 35/156 (22%)
Query: 1   MVQSEDKATKE------KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS 54
           +V  E+KA  +      KG+P FW  A+E+   +   I   D   L+YL DI    + D 
Sbjct: 166 LVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDG 225
Query: 55  E-GFKLEFTF--GPNPYFKNSVLEKTYRMIDET----DIVLEEAIGTVIHWYPGQ----- 102
             GFKL F F    NP+F N +L KTY    E     D + + A G  I W         
Sbjct: 226 RPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTV 285
Query: 103 ---------------CWIEKAE--RSFFNFFEPLEV 121
                            IEK     SFFNFF+P ++
Sbjct: 286 DLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKI 321

>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 27/99 (27%), Positives = 51/99 (51%), Gaps = 4/99 (4%)
Query: 14  VPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTFGPNPYFKNS 72
           +P+FW     +H ++   +   D+ A+ YLT ++     D   G++++F F  NPYF+N 
Sbjct: 78  IPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENK 137
Query: 73  VLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAERS 111
           VL K + M +  D     +  T I W  G+   +++ ++
Sbjct: 138 VLSKEFHMNESGDPS---SKSTEIKWKSGKDMTKRSSQT 173

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	1e-24
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	1e-20
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	2e-20
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	7e-20
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	6e-19

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225

 Score = 93.2 bits (231), Expect = 1e-24
 Identities = 32/138 (23%), Positives = 60/138 (43%), Gaps = 19/138 (13%)

Query: 5   EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTF 63
           + ++     +P+FW     +H ++   +   D+ A+ YLT ++     D + G++++F F
Sbjct: 69  QKRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYF 128

Query: 64  GPNPYFKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER------------- 110
             NPYF+N VL K + M +  D     +  T I W  G+   +++ +             
Sbjct: 129 DENPYFENKVLSKEFHMNESGD---PSSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEE 185

Query: 111 --SFFNFFEPLEVPTDVE 126
             SFF +F         E
Sbjct: 186 PESFFTWFTDHSDAGADE 203

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264

 Score = 83.2 bits (205), Expect = 1e-20
 Identities = 23/145 (15%), Positives = 40/145 (27%), Gaps = 27/145 (18%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIN------DSEGFKLEFTF-G 64
             + +FW I +  H      I   D   +  +  IK   +       D+  F + F F G
Sbjct: 52  DEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHG 111

Query: 65  PNPYFKNSVLEKTYRMIDETDIVLEEAI---GTVIHWYPGQCWIEKAER----------- 110
               FK   + K +++    D   +  +      I W      I                
Sbjct: 112 IEGDFKEQQVTKVFQIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKK 171

Query: 111 ------SFFNFFEPLEVPTDVEGFE 129
                 + F +F    +    E   
Sbjct: 172 YRQGMKTIFGWFRWTGLKPGKEFPH 196

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417

 Score = 84.2 bits (207), Expect = 2e-20
 Identities = 42/156 (26%), Positives = 62/156 (39%), Gaps = 29/156 (18%)

Query: 3   QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEF 61
           Q++ +  + KG+P FW  A+E+   +   I   D   L+YL DI    + D   GFKL F
Sbjct: 174 QNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLF 233

Query: 62  T--FGPNPYFKNSVLEKTYRMIDETDI----VLEEAIGTVIHWYPGQCWI---------- 105
                 NP+F N +L KTY    E       + + A G  I W      +          
Sbjct: 234 RFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQR 293

Query: 106 ------------EKAERSFFNFFEPLEVPTDVEGFE 129
                            SFFNFF+P ++  + +  E
Sbjct: 294 NKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEE 329

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359

 Score = 82.3 bits (202), Expect = 7e-20
 Identities = 45/157 (28%), Positives = 68/157 (43%), Gaps = 28/157 (17%)

Query: 1   MVQSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE----G 56
           +V + +       +P+FW  A+ +++ +   I  HD+  L YL DI+   I  ++    G
Sbjct: 98  LVGNGEAKIGTPNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEG 157

Query: 57  FKLEFTFGPNPYFKNSVLEKTYRMI---DETDIVLEEAIGTVIHWYPGQCWIEKAER--- 110
           F L F F  NP+F NSVL KTY M     + + VL     TVI WY  +  ++K      
Sbjct: 158 FILSFYFATNPFFSNSVLTKTYHMKCVDCDNEPVLLHTEATVIDWYDNKNILKKNVVKKQ 217

Query: 111 ------------------SFFNFFEPLEVPTDVEGFE 129
                             SFF+FF   +VP      +
Sbjct: 218 HNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNVIKQ 254

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193

 Score = 77.1 bits (189), Expect = 6e-19
 Identities = 26/130 (20%), Positives = 42/130 (32%), Gaps = 19/130 (14%)

Query: 12  KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEG---FKLEFTFGPNPY 68
           + +P FW   +  H  L  +IV  D   L +L  +      D+ G       F      +
Sbjct: 46  QKIPGFWANTLRKHPAL-SDIVPEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEF 104

Query: 69  FKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER------------SFFNFF 116
            +   L K     +  + V+E    T I W  G+  I                 S F +F
Sbjct: 105 MEPLTLVKHVTFDNNQEKVVE---CTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWF 161

Query: 117 EPLEVPTDVE 126
              E+    +
Sbjct: 162 TTDELQDKPD 171

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
2e50_A	225	Protein SET; histone chaperone, inhat, PP2AI, prot	100.0
3fs3_A	359	Nucleosome assembly protein 1, putative; protein l	100.0
3kyp_A	193	Pfnaps, nucleosome assembly protein; histone recog	100.0
2ayu_A	417	Nucleosome assembly protein; histone chaperone; 3.	100.0
2zd7_A	264	VPS75, vacuolar protein sorting-associated protein	100.0

>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1

Probab=100.00  E-value=1.1e-40  Score=258.03  Aligned_cols=116  Identities=27%  Similarity=0.581  Sum_probs=91.8

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCCC-ceEEEEEeCCCCCccCcEEEEEEEeccCC
Q 032992            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET   84 (129)
Q Consensus         6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~~-~f~i~F~F~~NpyF~N~~L~K~~~~~~~~   84 (129)
                      .|+++|++||+||++||+||+.++.+|+++|+++|+||+||+|++.++++ ||+|+|+|++||||+|++|+|+|++..+|
T Consensus        70 kR~eII~~IP~FW~tal~n~~~l~~~i~e~De~iL~~L~dI~v~~~~d~~~gf~i~F~F~~N~yF~N~vLtK~y~~~~~g  149 (225)
T 2e50_A           70 KRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG  149 (225)
T ss_dssp             HHHHHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred             HHHHHHhccccHHHHHHhcChhhhhhccHhHHHHHHhcCeeEEEEccCCCCceEEEEEeCCCCCccCCEEEEEEEecCCC
Confidence            57899999999999999999999999999999999999999999988765 99999999999999999999999999888


Q ss_pred             CeeeeeeeeeeeEecCCCCccccc---------------ccceeeccCCCCCCCC
Q 032992           85 DIVLEEAIGTVIHWYPGQCWIEKA---------------ERSFFNFFEPLEVPTD  124 (129)
Q Consensus        85 ~~~~~~~~~t~I~Wk~gk~~t~~~---------------~~SFF~~F~~~~~p~~  124 (129)
                      ++   .+++|+|+||+|+++|++.               ..|||+||+++..|+.
T Consensus       150 ~~---~s~~t~I~Wk~gkd~t~~~~~kk~~~~~~r~~~~~~SFF~fF~~~~~~~~  201 (225)
T 2e50_A          150 DP---SSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGA  201 (225)
T ss_dssp             -----CEEECCCCBCSSCCC----------------------CGGGGC------C
T ss_pred             Cc---ccCCCcceecCCCCccchhhhhcccccCcccCCCCCCcceecCCCCCCch
Confidence            76   4899999999999998652               2799999999988764

>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A

Probab=100.00  E-value=1.9e-38  Score=258.55  Aligned_cols=115  Identities=39%  Similarity=0.696  Sum_probs=95.1

Q ss_pred             CCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeC----CCCceEEEEEeCCCCCccCcEEEEEEEeccC---C
Q 032992           12 KGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIN----DSEGFKLEFTFGPNPYFKNSVLEKTYRMIDE---T   84 (129)
Q Consensus        12 ~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~----d~~~f~i~F~F~~NpyF~N~~L~K~~~~~~~---~   84 (129)
                      ++||+||++||+||++++.+|+++|+++|+||+||+|++.+    ++++|+|+|+|++||||+|++|+|+|++...   +
T Consensus       109 kgIP~FWltvl~Nhp~ls~~I~e~De~iL~yL~DI~Ve~l~~~~~~~~gfkI~F~F~eNpYF~N~vLtKey~l~~~~~~~  188 (359)
T 3fs3_A          109 PNLPEFWLRALRNNNTVSHVIEDHDEEILVYLNDIRCDYIKKNKEKKEGFILSFYFATNPFFSNSVLTKTYHMKCVDCDN  188 (359)
T ss_dssp             TTSTTHHHHHHHTSHHHHTTCCHHHHHHHTTEEEEEEEECC-------CEEEEEEECSCSSBCCSEEEEEEEEC------
T ss_pred             CCCCcHHHHHHHhchHHHHhccHhHHHHHhhcceeEEEEeccCCCCCCceEEEEEeCCCCcccCCEEEEEEEEeccCCCC
Confidence            49999999999999999999999999999999999999863    3469999999999999999999999999853   3


Q ss_pred             CeeeeeeeeeeeEecCCCCccccc---------------------ccceeeccCCCCCCCCCC
Q 032992           85 DIVLEEAIGTVIHWYPGQCWIEKA---------------------ERSFFNFFEPLEVPTDVE  126 (129)
Q Consensus        85 ~~~~~~~~~t~I~Wk~gk~~t~~~---------------------~~SFF~~F~~~~~p~~~~  126 (129)
                      +|++..+++|+|+||+|||+|++.                     ..|||+||++|.+|++++
T Consensus       189 dp~~~~se~t~I~WK~GKdlT~k~~~kKqr~K~t~~~R~v~k~~~~eSFFnfFspp~~p~~de  251 (359)
T 3fs3_A          189 EPVLLHTEATVIDWYDNKNILKKNVVKKQHNKNSREVKTVQQTVNRDSFFHFFTSHKVPNSNV  251 (359)
T ss_dssp             --CEEEEEECCCCBCTTCCTTCC----------------------CCCGGGGSCCBCC-----
T ss_pred             CcccccceeeeeeEeCCCccchhhhhhhccccCCCCceeeeccCCCCCceeeCCCCCCCCccc
Confidence            566667999999999999999652                     279999999999998765

>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum}

Probab=100.00  E-value=4.7e-39  Score=243.84  Aligned_cols=117  Identities=21%  Similarity=0.380  Sum_probs=100.6

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCC-CceEEEEEeCC--CCCccCcEEEEEEEecc
Q 032992            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDS-EGFKLEFTFGP--NPYFKNSVLEKTYRMID   82 (129)
Q Consensus         6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~-~~f~i~F~F~~--NpyF~N~~L~K~~~~~~   82 (129)
                      .|+++|++||+||++||+|||+++.++ ++|+++|+||+||+|++..++ +||+|+|+|++  ||||+|++|+|+|++..
T Consensus        40 kR~~iI~~IP~FW~t~l~n~~~ls~i~-~~De~~L~~L~di~v~~~~~~~~gf~i~F~F~~n~N~yF~N~vLtK~y~~~~  118 (193)
T 3kyp_A           40 KRDEIIQKIPGFWANTLRKHPALSDIV-PEDIDILNHLVKLDLKDNMDNNGSYKITFIFGEKAKEFMEPLTLVKHVTFDN  118 (193)
T ss_dssp             HHHHHHHTSTTTTHHHHTTSSSSTTSS-CHHHHTTCCCCEECCBCCSSSSCCCEEEEECSCCSSCSCSCEEEECCCCCC-
T ss_pred             HHHHHhcCCccHHHHHHHcCchHHHHH-HhhHHHHcCcceEEEEEccCCCCceEEEEEEcCCCCccccCceEEEEEEEcC
Confidence            478899999999999999999999865 789999999999999987555 59999999998  89999999999999988


Q ss_pred             CCCeeeeeeeeeeeEecCCCCccccc------------ccceeeccCCCCCCCCCC
Q 032992           83 ETDIVLEEAIGTVIHWYPGQCWIEKA------------ERSFFNFFEPLEVPTDVE  126 (129)
Q Consensus        83 ~~~~~~~~~~~t~I~Wk~gk~~t~~~------------~~SFF~~F~~~~~p~~~~  126 (129)
                      +|.++   +++|+|+||+|+|+|++.            ..|||+||+++++|++++
T Consensus       119 ~g~~~---~~~t~I~Wk~gk~~t~~~~~kr~~~~~~~~~~SFF~wF~~~~~~~~~e  171 (193)
T 3kyp_A          119 NQEKV---VECTRIKWKEGKNPIAAVTHNRSDLDNEIPKWSIFEWFTTDELQDKPD  171 (193)
T ss_dssp             ---CC---CCCCCCCCCSSCCCCC--------------CCCTTTTCCSSCCTTTTC
T ss_pred             CCCee---eccceeeeecCCCcchhhhhccccccccCCcchHhhhcCCCCcCCchH
Confidence            77654   689999999999998642            279999999999998765

>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A

Probab=100.00  E-value=1.5e-37  Score=257.99  Aligned_cols=118  Identities=36%  Similarity=0.648  Sum_probs=104.6

Q ss_pred             cccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCC-CCceEEEEEe--CCCCCccCcEEEEEEEeccC--
Q 032992            9 TKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRIND-SEGFKLEFTF--GPNPYFKNSVLEKTYRMIDE--   83 (129)
Q Consensus         9 ~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d-~~~f~i~F~F--~~NpyF~N~~L~K~~~~~~~--   83 (129)
                      +.+++||+||++||+||+.|+.+|+++|++||+||+||+|++..+ ..||+|+|+|  .+||||+|++|||+|++..+  
T Consensus       180 ~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~  259 (417)
T 2ayu_A          180 EQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELG  259 (417)
T ss_dssp             -CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCC
T ss_pred             ccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEEEccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCC
Confidence            346999999999999999999999999999999999999999876 4599999999  99999999999999999854  


Q ss_pred             --CCeeeeeeeeeeeEecC-CCCccccc---------------------ccceeeccCCCCCCCCCC
Q 032992           84 --TDIVLEEAIGTVIHWYP-GQCWIEKA---------------------ERSFFNFFEPLEVPTDVE  126 (129)
Q Consensus        84 --~~~~~~~~~~t~I~Wk~-gk~~t~~~---------------------~~SFF~~F~~~~~p~~~~  126 (129)
                        |..++..+++|+|+||+ |||||++.                     ..|||+||+++.+|+.++
T Consensus       260 ~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~R~v~k~v~~~SFFnfFspp~~p~~de  326 (417)
T 2ayu_A          260 YSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQ  326 (417)
T ss_dssp             SSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSCCCTT
T ss_pred             CCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcccccccCCCCCCceeecCCCCCCCccc
Confidence              34444578999999999 99998642                     169999999999998863

>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A

Probab=100.00  E-value=2.4e-37  Score=244.10  Aligned_cols=119  Identities=16%  Similarity=0.270  Sum_probs=102.7

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEe------CCCCceEEEEEeCC-CCCccCcEEEEEE
Q 032992            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRI------NDSEGFKLEFTFGP-NPYFKNSVLEKTY   78 (129)
Q Consensus         6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~------~d~~~f~i~F~F~~-NpyF~N~~L~K~~   78 (129)
                      .|+++|++||+||++||+||+.|+.+|+++|++||+||+||+|+++      ++++||+|+|+|++ ||||+|++|+|+|
T Consensus        46 kR~eII~~IP~FWltal~n~~~l~~~I~e~De~iL~~L~dI~v~~~~~~~~~~~~~gf~i~F~F~~~NpyF~N~vLtK~y  125 (264)
T 2zd7_A           46 KRDAYIDEIAEFWKIVLSQHVSFANYIRASDFKYIDTIDKIKVEWLALESEMYDTRDFSITFHFHGIEGDFKEQQVTKVF  125 (264)
T ss_dssp             HHHHHHTTCTTHHHHHHHHSTTGGGGSCGGGHHHHTTEEEEEEEEGGGTCTTSCTTCEEEEEEECCBTTTBCCEEEEEEE
T ss_pred             HHHHHHhcchhHHHHHHHcChHHHhhcCHhhHHHHHhcCceEEEEecccccCCCCCceEEEEEeCCCCCCccCCeEEEEE
Confidence            5789999999999999999999999999999999999999999996      45679999999999 9999999999999


Q ss_pred             EeccC--C-CeeeeeeeeeeeEecCCCCc-cccc----------------ccceeeccCCCCCCCC
Q 032992           79 RMIDE--T-DIVLEEAIGTVIHWYPGQCW-IEKA----------------ERSFFNFFEPLEVPTD  124 (129)
Q Consensus        79 ~~~~~--~-~~~~~~~~~t~I~Wk~gk~~-t~~~----------------~~SFF~~F~~~~~p~~  124 (129)
                      ++..+  | ++.+.++++|+|+||+|+++ +.+.                ..|||+||+++..|+.
T Consensus       126 ~~~~~~dg~~~~~~~s~~t~I~WK~g~~~~~~~~~~kk~~~~~~~~~r~~~~SFF~fF~~~~~~~~  191 (264)
T 2zd7_A          126 QIKKGKDDQEDGILTSEPVPIEWPQSYDSINPDLIKDKRSPEGKKKYRQGMKTIFGWFRWTGLKPG  191 (264)
T ss_dssp             EEECCSSSCCCCEEEECCCCCCCCGGGGGGCTTTCSCSSSHHHHHHHHHHHTSHHHHTTCCSSSTT
T ss_pred             EecccCCCCCCCceeEeecccccCCCccccchhhhhhccccccccccCCCCCCcceecCCCCCCcc
Confidence            99864  3 23245899999999997654 3221                2699999999987754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d2e50a1	222	d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie	1e-25
d2ayua1	301	d.305.1.1 (A:70-370) Nucleosome assembly protein,	8e-24

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.3 bits (234), Expect = 1e-25
 Identities = 32/133 (24%), Positives = 57/133 (42%), Gaps = 19/133 (14%)

Query: 10  KEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPY 68
               +P+FW     +H ++   +   D+ A+ YLT ++     D + G++++F F  NPY
Sbjct: 74  LIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPY 133

Query: 69  FKNSVLEKTYRMIDETDIVLEEAIGTVIHWYPGQCWIEKAER---------------SFF 113
           F+N VL K + M +  D   +    T I W  G+   +++ +               SFF
Sbjct: 134 FENKVLSKEFHMNESGDPSSK---STEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFF 190

Query: 114 NFFEPLEVPTDVE 126
            +F         E
Sbjct: 191 TWFTDHSDAGADE 203

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 90.8 bits (225), Expect = 8e-24
 Identities = 38/156 (24%), Positives = 58/156 (37%), Gaps = 29/156 (18%)

Query: 3   QSEDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSEG---FKL 59
           Q++ +  + KG+P FW  A+E+   +   I   D   L+YL DI    + D         
Sbjct: 105 QNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLF 164

Query: 60  EFTFGPNPYFKNSVLEKTYRMIDETDI----VLEEAIGTVIHWYPGQCWIEKAE------ 109
            F    NP+F N +L KTY    E       + + A G  I W      +          
Sbjct: 165 RFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQR 224

Query: 110 ----------------RSFFNFFEPLEVPTDVEGFE 129
                            SFFNFF+P ++  + +  E
Sbjct: 225 NKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEE 260

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2e50a1	222	Protein SET {Human (Homo sapiens) [TaxId: 9606]}	100.0
d2ayua1	301	Nucleosome assembly protein, NAP {Baker's yeast (S	100.0

>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Protein SET
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=7.7e-42  Score=262.03  Aligned_cols=117  Identities=26%  Similarity=0.568  Sum_probs=92.6

Q ss_pred             ccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCCC-ceEEEEEeCCCCCccCcEEEEEEEeccCC
Q 032992            6 DKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTFGPNPYFKNSVLEKTYRMIDET   84 (129)
Q Consensus         6 ~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~~-~f~i~F~F~~NpyF~N~~L~K~~~~~~~~   84 (129)
                      .|+++|++||+||++||+||+.++.+|+++|+++|+||+||+|++.+++. +|+|+|+|++||||+|++|+|+|+++.++
T Consensus        70 ~R~~iI~gIP~FW~~~l~n~~~l~~~I~~~D~~~L~~L~dI~v~~~~~~~~~f~i~F~F~~N~yF~N~~L~K~y~~~~~~  149 (222)
T d2e50a1          70 KRSELIAKIPNFWVTTFVNHPQVSALLGEEDEEAMHYLTRVEVTEFEDIKSGYRIDFYFDENPYFENKVLSKEFHMNESG  149 (222)
T ss_dssp             HHHHHHTTSTTHHHHHHHTSHHHHTTCCHHHHHHGGGEEEEEEEECCSSCCCEEEEEEECSCSSBSCSEEEEEEC-----
T ss_pred             HHHHHhccCccHHHHHHHcCcchhhhCCHHHHHHHHhhhheeeeeccCCCCceEEEEEeCCCCcccCCeEEEEEEecCCC
Confidence            47899999999999999999999999999999999999999999988875 89999999999999999999999999887


Q ss_pred             CeeeeeeeeeeeEecCCCCccccc---------------ccceeeccCCCCCCCCC
Q 032992           85 DIVLEEAIGTVIHWYPGQCWIEKA---------------ERSFFNFFEPLEVPTDV  125 (129)
Q Consensus        85 ~~~~~~~~~t~I~Wk~gk~~t~~~---------------~~SFF~~F~~~~~p~~~  125 (129)
                      ++   .+++|+|+||+|+++|++.               ..|||+||+++..|+.+
T Consensus       150 ~~---~~~~t~I~Wk~gkd~t~k~~~~~~~~~~~~~~~~~~SFFnfF~~~~~~~~d  202 (222)
T d2e50a1         150 DP---SSKSTEIKWKSGKDMTKRSSQTQNKASRKRQHEEPESFFTWFTDHSDAGAD  202 (222)
T ss_dssp             -----CEEECCCCBCSSCCC----------------------CGGGGC------CH
T ss_pred             Cc---ccccccceecCCCccccccccccccCccccccCCCCChhhcCCCCCCCCch
Confidence            66   4899999999999998864               16999999999988765

>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.5e-37  Score=247.26  Aligned_cols=123  Identities=34%  Similarity=0.637  Sum_probs=103.9

Q ss_pred             cccccccCCCCchHHHHHhcChhhhhhhccCchhHhccccceEEEEeCCCC-ceEEEEEe--CCCCCccCcEEEEEEEec
Q 032992            5 EDKATKEKGVPDFWFIAMESHHELRQNIVRHDQGALKYLTDIKWCRINDSE-GFKLEFTF--GPNPYFKNSVLEKTYRMI   81 (129)
Q Consensus         5 ~~~~~~i~~IP~FW~~vl~n~~~l~~~i~~~D~~iL~~L~dI~v~~~~d~~-~f~i~F~F--~~NpyF~N~~L~K~~~~~   81 (129)
                      +...+.+++||+||++||+||+.++.+|+++|+++|+||+||+|++.+++. ||+|+|+|  ++||||+|++|+|+|++.
T Consensus       107 ~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf~l~F~F~f~~N~yF~N~vLtK~y~~~  186 (301)
T d2ayua1         107 DSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQ  186 (301)
T ss_dssp             -----CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEE
T ss_pred             ccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCceEEEEEecCCCCCCCCCeEEEEEEEe
Confidence            345667899999999999999999999999999999999999999988876 99999999  689999999999999997


Q ss_pred             cCC----CeeeeeeeeeeeEecC-CCCccccc---------------------ccceeeccCCCCCCCCCCC
Q 032992           82 DET----DIVLEEAIGTVIHWYP-GQCWIEKA---------------------ERSFFNFFEPLEVPTDVEG  127 (129)
Q Consensus        82 ~~~----~~~~~~~~~t~I~Wk~-gk~~t~~~---------------------~~SFF~~F~~~~~p~~~~~  127 (129)
                      ...    ..++..+++|+|+||+ |+++|.+.                     ..|||+||+++.+|+.+++
T Consensus       187 ~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~~SFF~fF~~~~~~~~~~~  258 (301)
T d2ayua1         187 KELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQD  258 (301)
T ss_dssp             SSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEECCCGGGGGSCSCSCCCTTS
T ss_pred             cCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCCCCCCcCCCCCCCCCcccc
Confidence            542    3344579999999999 68887542                     1599999999999987654