Citrus Sinensis ID: 033076

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQVS
Secondary Structure (PSIPRED)
ccccccccccccccccccEEEEEccccccEEEEEEccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEccccEEEcccEEEEEEEEEEEccccEEEEEcccccEEEEEEccccHHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccHHHHHHcccccEEEEccEEEEEEEEEEcccccccccEEEEEEEEcccccEEEEEEEcccEEEEEcEEEEEEEEEEEEcccEEEEEcccccccHHccccccHHHHHHHc
Coil and Loop (DISEMBL)
msdeehhfeskadagasktfpqqagtirkngyivikgrpckvvevstsktgkhghakchfvgidifngkkledivpsshncdvphvtrtdyqlidisEDGFVSLLTengntkddlrlptdenllsqvs
Flexible Loop (DISEMBL)
msdeehhfeskadagasktfpqqagtirkngyivikGRPCKVVEVStsktgkhghakchFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTEngntkddlrlptdenllsqvs
Low Complexity Region (SEG)
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQVS
Disordered region (IsUnstruct)
*************************TIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLT**********************
Disordered Region (DISOPRED)
******H***********TFPQQAGTIRKNGYIVIKGRPCKVVEVSTS****HGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV*
Disordered Region (DISEMBL)
*****************KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQVS
Disordered Region (DISPRO)
*****************KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQVS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQVS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q9AXQ5	160	Eukaryotic translation in	N/A	no	0.992	0.793	0.968	7e-69
Q9AXJ4	160	Eukaryotic translation in	N/A	no	0.992	0.793	0.960	3e-68
P56335	160	Eukaryotic translation in	N/A	no	0.992	0.793	0.952	6e-68
Q9AXQ3	160	Eukaryotic translation in	N/A	no	0.992	0.793	0.944	2e-67
P56333	160	Eukaryotic translation in	N/A	no	0.992	0.793	0.944	3e-67
Q9AXQ4	159	Eukaryotic translation in	N/A	no	0.992	0.798	0.937	1e-66
P24922	159	Eukaryotic translation in	N/A	no	0.992	0.798	0.929	3e-66
P56336	159	Eukaryotic translation in	N/A	no	0.992	0.798	0.921	7e-66
P69040	159	Eukaryotic translation in	N/A	no	0.992	0.798	0.921	2e-65
P69039	159	Eukaryotic translation in	N/A	no	0.992	0.798	0.921	2e-65

>sp|Q9AXQ5|IF5A2_SOLLC Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1

 Score =  258 bits (659), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 123/127 (96%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLL QV
Sbjct: 121 ENLLKQV 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.
Solanum lycopersicum (taxid: 4081)

>sp|Q9AXJ4|IF5A_MANES Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2

 Score =  256 bits (654), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLLSQ+
Sbjct: 121 ENLLSQI 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Manihot esculenta (taxid: 3983)

>sp|P56335|IF5A3_SOLTU Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1

 Score =  255 bits (651), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 121/127 (95%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           E+LL QV
Sbjct: 121 ESLLKQV 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum tuberosum (taxid: 4113)

>sp|Q9AXQ3|IF5A4_SOLLC Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1

 Score =  253 bits (646), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 120/127 (94%), Positives = 123/127 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFN KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           + LL+QV
Sbjct: 121 DTLLNQV 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum lycopersicum (taxid: 4081)

>sp|P56333|IF5A1_SOLTU Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1

 Score =  253 bits (645), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 120/127 (94%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           + LL+QV
Sbjct: 121 DALLNQV 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum tuberosum (taxid: 4113)

>sp|Q9AXQ4|IF5A3_SOLLC Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1

 Score =  250 bits (639), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 119/127 (93%), Positives = 122/127 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLLS +
Sbjct: 121 ENLLSLI 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum lycopersicum (taxid: 4081)

>sp|P24922|IF5A2_NICPL Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1

 Score =  249 bits (637), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 118/127 (92%), Positives = 123/127 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           +NLL+Q+
Sbjct: 121 DNLLTQI 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Nicotiana plumbaginifolia (taxid: 4092)

>sp|P56336|IF5A4_SOLTU Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1

 Score =  248 bits (633), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 117/127 (92%), Positives = 123/127 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLT+NGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTDNGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ++LLSQ+
Sbjct: 121 DSLLSQI 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Solanum tuberosum (taxid: 4113)

>sp|P69040|IF5A1_TOBAC Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/127 (92%), Positives = 122/127 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           +NLL+ +
Sbjct: 121 DNLLALI 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Nicotiana tabacum (taxid: 4097)

>sp|P69039|IF5A1_NICPL Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1

 Score =  246 bits (629), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 117/127 (92%), Positives = 122/127 (96%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           +NLL+ +
Sbjct: 121 DNLLALI 127

The precise role of eIF-5A in protein biosynthesis is not known but it functions by promoting the formation of the first peptide bond.

Nicotiana plumbaginifolia (taxid: 4092)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
255542136	509	initiation factor 5a, putative [Ricinus	0.992	0.249	0.968	1e-67
33325127	159	eukaryotic translation initiation factor	0.992	0.798	0.968	4e-67
350536449	160	eukaryotic translation initiation factor	0.992	0.793	0.968	5e-67
151347490	159	translation initiation factor [Carica pa	0.992	0.798	0.960	9e-67
33325129	159	eukaryotic translation initiation factor	0.992	0.798	0.960	1e-66
192910692	159	eukaryotic translation initiation factor	0.992	0.798	0.960	1e-66
33325117	160	eukaryotic translation initiation factor	0.992	0.793	0.960	1e-66
33325131	158	eukaryotic translation initiation factor	0.984	0.797	0.968	1e-66
20138704	160	RecName: Full=Eukaryotic translation ini	0.992	0.793	0.960	2e-66
40287522	159	mary storys protein [Capsicum annuum] gi	0.992	0.798	0.960	2e-66

>gi|255542136|ref|XP_002512132.1| initiation factor 5a, putative [Ricinus communis] gi|223549312|gb|EEF50801.1| initiation factor 5a, putative [Ricinus communis]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 123/127 (96%), Positives = 125/127 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 351 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 410

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFN KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 411 VGIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 470

Query: 121 ENLLSQV 127
           ENLLSQ+
Sbjct: 471 ENLLSQI 477

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33325127|gb|AAQ08196.1| eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 123/127 (96%), Positives = 125/127 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFN KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLLSQ+
Sbjct: 121 ENLLSQI 127

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350536449|ref|NP_001234503.1| eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum] gi|20138707|sp|Q9AXQ5.1|IF5A2_SOLLC RecName: Full=Eukaryotic translation initiation factor 5A-2; Short=eIF-5A-2 gi|12407789|gb|AAG53648.1|AF296084_1 eukaryotic translation initiation factor 5A-2 [Solanum lycopersicum]

 Score =  258 bits (659), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 123/127 (96%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLL QV
Sbjct: 121 ENLLKQV 127

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|151347490|gb|ABS01354.1| translation initiation factor [Carica papaya]

 Score =  257 bits (657), Expect = 9e-67,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 125/127 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIF GKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFTGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLL+Q+
Sbjct: 121 ENLLTQI 127

Source: Carica papaya

Species: Carica papaya

Genus: Carica

Family: Caricaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33325129|gb|AAQ08197.1| eukaryotic translation initiation factor 5A isoform VII [Hevea brasiliensis]

 Score =  257 bits (657), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 125/127 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVV+VSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVDVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFN KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLLSQ+
Sbjct: 121 ENLLSQI 127

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|192910692|gb|ACF06454.1| eukaryotic translation initiation factor 5A isoform IV [Elaeis guineensis]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 125/127 (98%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIF  KKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTE+GNTKDDLRLPTD
Sbjct: 61  VGIDIFTAKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTESGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLL+Q+
Sbjct: 121 ENLLAQI 127

Source: Elaeis guineensis

Species: Elaeis guineensis

Genus: Elaeis

Family: Arecaceae

Order: Arecales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33325117|gb|AAQ08191.1| eukaryotic translation initiation factor 5A isoform I [Hevea brasiliensis] gi|33325119|gb|AAQ08192.1| eukaryotic translation initiation factor 5A isoform II [Hevea brasiliensis]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFN KKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VGIDIFNAKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLLSQ+
Sbjct: 121 ENLLSQI 127

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|33325131|gb|AAQ08198.1| eukaryotic translation initiation factor 5A isoform VIII [Hevea brasiliensis]

 Score =  257 bits (656), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 122/126 (96%), Positives = 125/126 (99%)

Query: 2   SDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV 61
           SDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHFV
Sbjct: 1   SDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHFV 60

Query: 62  GIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 121
           GIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE
Sbjct: 61  GIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 120

Query: 122 NLLSQV 127
           NLL+Q+
Sbjct: 121 NLLTQI 126

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|20138704|sp|Q9AXJ4.2|IF5A_MANES RecName: Full=Eukaryotic translation initiation factor 5A; Short=eIF-5A gi|14193249|gb|AAK55848.1|AF266464_1 translation initiation factor 5A [Manihot esculenta]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           VGIDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTE GNTKDDLRLPTD
Sbjct: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTETGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           ENLLSQ+
Sbjct: 121 ENLLSQI 127

Source: Manihot esculenta

Species: Manihot esculenta

Genus: Manihot

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|40287522|gb|AAR83875.1| mary storys protein [Capsicum annuum] gi|44894088|gb|AAS48586.1| eukaryotic initiation factor 5A2 [Capsicum annuum]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 122/127 (96%), Positives = 124/127 (97%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIFNGKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD
Sbjct: 61  VAIDIFNGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120

Query: 121 ENLLSQV 127
           + LLSQV
Sbjct: 121 DTLLSQV 127

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2014784	158	ELF5A-1 "eukaryotic elongation	0.984	0.797	0.866	1.7e-57
TAIR|locus:2007176	158	ELF5A-3 "eukaryotic elongation	0.984	0.797	0.858	2e-56
TAIR|locus:2200570	159	FBR12 "FUMONISIN B1-RESISTANT1	0.984	0.792	0.787	1.3e-52
GENEDB_PFALCIPARUM|PFL0210c	161	PFL0210c "eukaryotic initiatio	0.984	0.782	0.651	2.6e-40
UNIPROTKB|Q8I603	161	PFL0210c "Eukaryotic initiatio	0.984	0.782	0.651	2.6e-40
SGD|S000003808	157	ANB1 "Translation elongation f	0.929	0.757	0.644	3.3e-40
ASPGD|ASPL0000009517	159	AN4015 [Emericella nidulans (t	0.937	0.754	0.617	6.8e-40
SGD|S000000760	157	HYP2 "Translation elongation f	0.929	0.757	0.636	2.9e-39
ZFIN|ZDB-GENE-040426-2229	155	eif5a "eukaryotic translation	0.968	0.8	0.606	1.3e-38
UNIPROTKB|G1K322	133	EIF5A2 "Eukaryotic translation	0.898	0.864	0.644	1.6e-38

TAIR|locus:2014784 ELF5A-1 "eukaryotic elongation factor 5A-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 591 (213.1 bits), Expect = 1.7e-57, P = 1.7e-57
 Identities = 110/127 (86%), Positives = 118/127 (92%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEHHFES +DAGASKT+PQQAGTIRKNGYIVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDEEHHFES-SDAGASKTYPQQAGTIRKNGYIVIKNRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             V IDIF  KKLEDIVPSSHNCDVPHV RTDYQLIDISEDG+VSLLT+NG+TKDDL+LP D
Sbjct:    60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGYVSLLTDNGSTKDDLKLPND 119

Query:   121 ENLLSQV 127
             + LL Q+
Sbjct:   120 DTLLQQI 126

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=ISS

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0010089 "xylem development" evidence=IMP

TAIR|locus:2007176 ELF5A-3 "eukaryotic elongation factor 5A-3" [Arabidopsis thaliana (taxid:3702)]

 Score = 581 (209.6 bits), Expect = 2.0e-56, P = 2.0e-56
 Identities = 109/127 (85%), Positives = 118/127 (92%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD+EHHFES +DAGASKT+PQQAG IRK G+IVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDDEHHFES-SDAGASKTYPQQAGNIRKGGHIVIKGRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDISEDGFVSLLT+NG+TKDDL+LPTD
Sbjct:    60 VAIDIFTSKKLEDIVPSSHNCDVPHVNRVDYQLIDISEDGFVSLLTDNGSTKDDLKLPTD 119

Query:   121 ENLLSQV 127
             E LL+Q+
Sbjct:   120 EALLTQL 126

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=ISS

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

TAIR|locus:2200570 FBR12 "FUMONISIN B1-RESISTANT12" [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 100/127 (78%), Positives = 114/127 (89%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct:     1 MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct:    60 VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 119

Query:   121 ENLLSQV 127
             + L +Q+
Sbjct:   120 DGLTAQM 126

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=ISS;IMP

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006413 "translational initiation" evidence=ISS;IMP

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0046686 "response to cadmium ion" evidence=IEP;RCA

GO:0009611 "response to wounding" evidence=IEP

GO:0009617 "response to bacterium" evidence=IEP

GO:0012501 "programmed cell death" evidence=IMP

GO:0034050 "host programmed cell death induced by symbiont" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=RCA

GO:0006007 "glucose catabolic process" evidence=RCA

GO:0006094 "gluconeogenesis" evidence=RCA

GO:0006096 "glycolysis" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GENEDB_PFALCIPARUM|PFL0210c PFL0210c "eukaryotic initiation factor 5a, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 84/129 (65%), Positives = 100/129 (77%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD  H      DAGAS+T+P QAG I+KNG++++K  PCKVV+ STSKTGKHGHAK H 
Sbjct:     1 MSD--HEMYDNIDAGASQTYPVQAGAIKKNGHVMLKEHPCKVVDYSTSKTGKHGHAKAHI 58

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             VGIDIF G+K EDI P+SHN DVP V RT+ QLIDI+EDGFVSLL +NG+TKDDL LP D
Sbjct:    59 VGIDIFTGRKYEDICPTSHNMDVPVVKRTELQLIDITEDGFVSLLYDNGDTKDDLSLPKD 118

Query:   121 -ENLLSQVS 128
              E  L +V+
Sbjct:   119 TEGNLDEVA 127

GO:0005575 "cellular_component" evidence=ND

UNIPROTKB|Q8I603 PFL0210c "Eukaryotic initiation factor 5a, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 429 (156.1 bits), Expect = 2.6e-40, P = 2.6e-40
 Identities = 84/129 (65%), Positives = 100/129 (77%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSD  H      DAGAS+T+P QAG I+KNG++++K  PCKVV+ STSKTGKHGHAK H 
Sbjct:     1 MSD--HEMYDNIDAGASQTYPVQAGAIKKNGHVMLKEHPCKVVDYSTSKTGKHGHAKAHI 58

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             VGIDIF G+K EDI P+SHN DVP V RT+ QLIDI+EDGFVSLL +NG+TKDDL LP D
Sbjct:    59 VGIDIFTGRKYEDICPTSHNMDVPVVKRTELQLIDITEDGFVSLLYDNGDTKDDLSLPKD 118

Query:   121 -ENLLSQVS 128
              E  L +V+
Sbjct:   119 TEGNLDEVA 127

GO:0005575 "cellular_component" evidence=ND

SGD|S000003808 ANB1 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 428 (155.7 bits), Expect = 3.3e-40, P = 3.3e-40
 Identities = 78/121 (64%), Positives = 100/121 (82%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEH FE+ ADAGAS T+P Q   +RKNG++VIKGRPCK+V++STSKTGKHGHAK H 
Sbjct:     1 MSDEEHTFEN-ADAGASATYPMQCSALRKNGFVVIKGRPCKIVDMSTSKTGKHGHAKVHL 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             V +DIF GKKLED+ PS+HN +VP V R++YQL+DI +DG++SL+T +G TKDD++ P  
Sbjct:    60 VTLDIFTGKKLEDLSPSTHNLEVPFVKRSEYQLLDI-DDGYLSLMTMDGETKDDVKAPEG 118

Query:   121 E 121
             E
Sbjct:   119 E 119

GO:0043022 "ribosome binding" evidence=IEA;ISA

GO:0006452 "translational frameshifting" evidence=IEA;ISA

GO:0003746 "translation elongation factor activity" evidence=IEA;ISA

GO:0003723 "RNA binding" evidence=IEA;ISA

GO:0022626 "cytosolic ribosome" evidence=ISA

GO:0006414 "translational elongation" evidence=IEA

GO:0006412 "translation" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA;ISA

GO:0045905 "positive regulation of translational termination" evidence=IEA;ISA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

ASPGD|ASPL0000009517 AN4015 [Emericella nidulans (taxid:162425)]

 Score = 425 (154.7 bits), Expect = 6.8e-40, P = 6.8e-40
 Identities = 76/123 (61%), Positives = 101/123 (82%)

Query:     1 MSDEEHH--FESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKC 58
             M+DE H   FES ADAGAS T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK 
Sbjct:     1 MADEAHEVTFES-ADAGASATYPMQCSALRKNGFVVIKNRPCKIVDMSTSKTGKHGHAKV 59

Query:    59 HFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118
             H V IDIF GKK ED+ PS+HN DVP+V+R +YQL+D+++DGF+SL+ ++G+TKDD+++P
Sbjct:    60 HLVAIDIFTGKKYEDLSPSTHNMDVPNVSRKEYQLLDVTDDGFLSLMDDSGDTKDDVKVP 119

Query:   119 TDE 121
               E
Sbjct:   120 EGE 122

GO:0006452 "translational frameshifting" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0045948 "positive regulation of translational initiation" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0022626 "cytosolic ribosome" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

SGD|S000000760 HYP2 "Translation elongation factor eIF-5A" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/121 (63%), Positives = 98/121 (80%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             MSDEEH FE+ ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H 
Sbjct:     1 MSDEEHTFET-ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P  
Sbjct:    60 VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEG 118

Query:   121 E 121
             E
Sbjct:   119 E 119

GO:0006414 "translational elongation" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA;IGI;IDA;IMP

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0003746 "translation elongation factor activity" evidence=IEA;IDA;IMP

GO:0003723 "RNA binding" evidence=IEA;IDA

GO:0045905 "positive regulation of translational termination" evidence=IEA;IDA

GO:0006452 "translational frameshifting" evidence=IEA;IMP

GO:0045948 "positive regulation of translational initiation" evidence=IDA

GO:0003743 "translation initiation factor activity" evidence=IDA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0043022 "ribosome binding" evidence=IEA;IPI

GO:0022626 "cytosolic ribosome" evidence=IPI

GO:0006412 "translation" evidence=IEA

ZFIN|ZDB-GENE-040426-2229 eif5a "eukaryotic translation initiation factor 5A" [Danio rerio (taxid:7955)]

 Score = 413 (150.4 bits), Expect = 1.3e-38, P = 1.3e-38
 Identities = 77/127 (60%), Positives = 100/127 (78%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             M+D +  F S  DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H 
Sbjct:     1 MADPDLDFAS-GDAGASATYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHL 59

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
             VGIDIF  KK EDI PS+HN DVP++ R DYQL+DISE GF+SL+ +NG+ ++DLR+P D
Sbjct:    60 VGIDIFTNKKYEDICPSTHNMDVPNIKRNDYQLVDISE-GFLSLMMDNGDVREDLRVP-D 117

Query:   121 ENLLSQV 127
              +L  ++
Sbjct:   118 GDLGKEI 124

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|G1K322 EIF5A2 "Eukaryotic translation initiation factor 5A-2" [Gallus gallus (taxid:9031)]

 Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
 Identities = 76/118 (64%), Positives = 95/118 (80%)

Query:     1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
             M+DE     +  DAGAS T+P Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H 
Sbjct:     1 MADELDF--TTGDAGASSTYPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHL 58

Query:    61 VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118
             VGIDIFNGKK EDI PS+HN DVP++ R DYQLI I +DG++SLLTE+G  ++DL+LP
Sbjct:    59 VGIDIFNGKKYEDICPSTHNMDVPNIKRNDYQLIGI-QDGYLSLLTESGEVREDLKLP 115

GO:0003746 "translation elongation factor activity" evidence=IEA

GO:0006452 "translational frameshifting" evidence=IEA

GO:0008612 "peptidyl-lysine modification to hypusine" evidence=IEA

GO:0043022 "ribosome binding" evidence=IEA

GO:0045901 "positive regulation of translational elongation" evidence=IEA

GO:0045905 "positive regulation of translational termination" evidence=IEA

GO:0008284 "positive regulation of cell proliferation" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5R898	IF5A2_PONAB	No assigned EC number	0.6517	0.8671	0.7254	yes	no
P19211	IF5A2_YEAST	No assigned EC number	0.6446	0.9296	0.7579	yes	no
Q9GZV4	IF5A2_HUMAN	No assigned EC number	0.6517	0.8671	0.7254	yes	no
P69039	IF5A1_NICPL	No assigned EC number	0.9212	0.9921	0.7987	N/A	no
Q07460	IF5A2_CHICK	No assigned EC number	0.6697	0.8437	0.7058	yes	no
Q9SC12	IF5A_SENVE	No assigned EC number	0.8976	0.9921	0.7987	N/A	no
P56289	IF5A1_SCHPO	No assigned EC number	0.6033	0.9375	0.7643	yes	no
A1RX88	IF5A_THEPD	No assigned EC number	0.3909	0.8515	0.8257	yes	no
P80639	IF5A_MAIZE	No assigned EC number	0.8828	0.9921	0.7937	N/A	no
Q9UST4	IF5A2_SCHPO	No assigned EC number	0.6033	0.9375	0.7100	yes	no
P13651	IF5A_DICDI	No assigned EC number	0.5714	0.8671	0.6981	yes	no
P56337	IF5A5_SOLTU	No assigned EC number	0.9212	0.9921	0.7987	N/A	no
P56336	IF5A4_SOLTU	No assigned EC number	0.9212	0.9921	0.7987	N/A	no
P56335	IF5A3_SOLTU	No assigned EC number	0.9527	0.9921	0.7937	N/A	no
P69040	IF5A1_TOBAC	No assigned EC number	0.9212	0.9921	0.7987	N/A	no
P56333	IF5A1_SOLTU	No assigned EC number	0.9448	0.9921	0.7937	N/A	no
Q945F4	IF5A2_MEDSA	No assigned EC number	0.8976	0.9921	0.7987	N/A	no
P24922	IF5A2_NICPL	No assigned EC number	0.9291	0.9921	0.7987	N/A	no
Q8BGY2	IF5A2_MOUSE	No assigned EC number	0.6517	0.8671	0.7254	yes	no
Q9XI91	IF5A1_ARATH	No assigned EC number	0.8661	0.9843	0.7974	yes	no
Q9AXQ4	IF5A3_SOLLC	No assigned EC number	0.9370	0.9921	0.7987	N/A	no
Q9AXQ5	IF5A2_SOLLC	No assigned EC number	0.9685	0.9921	0.7937	N/A	no
Q9AXQ6	IF5A1_SOLLC	No assigned EC number	0.9212	0.9921	0.7987	N/A	no
Q9AXQ7	IF5A_DIACA	No assigned EC number	0.8346	0.9921	0.7937	N/A	no
Q9AXQ3	IF5A4_SOLLC	No assigned EC number	0.9448	0.9921	0.7937	N/A	no
P26564	IF5A1_MEDSA	No assigned EC number	0.8828	0.9921	0.7888	N/A	no
Q9GU68	IF5A_DROME	No assigned EC number	0.5785	0.9375	0.7547	yes	no
Q9AXJ4	IF5A_MANES	No assigned EC number	0.9606	0.9921	0.7937	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
PLN03107	159	PLN03107, PLN03107, eukaryotic translation initiat	2e-89
PTZ00328	166	PTZ00328, PTZ00328, eukaryotic initiation factor 5	2e-40
TIGR00037	130	TIGR00037, eIF_5A, translation elongation factor I	2e-40
COG0231	131	COG0231, Efp, Translation elongation factor P (EF-	1e-23
PRK03999	129	PRK03999, PRK03999, translation initiation factor	3e-21
pfam01287	69	pfam01287, eIF-5a, Eukaryotic elongation factor 5A	3e-17
cd04468	69	cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translatio	1e-14
TIGR00038	184	TIGR00038, efp, translation elongation factor P	5e-04
PRK00529	186	PRK00529, PRK00529, elongation factor P; Validated	0.004

>gnl|CDD|215580 PLN03107, PLN03107, eukaryotic translation initiation factor 5A; Provisional

 Score =  255 bits (654), Expect = 2e-89
 Identities = 112/128 (87%), Positives = 118/128 (92%), Gaps = 2/128 (1%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEHHFES ADAGASKT+PQQAGTIRK GYIVIKGRPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 1   MSDEEHHFES-ADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 59

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT- 119
           V IDIF GKKLEDIVPSSHNCDVPHV RTDYQLIDISEDGFVSL+ E+GNTKDDL+LPT 
Sbjct: 60  VAIDIFTGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDDLKLPTE 119

Query: 120 DENLLSQV 127
           D+ L  Q+
Sbjct: 120 DDTLAEQI 127

Length = 159

>gnl|CDD|140349 PTZ00328, PTZ00328, eukaryotic initiation factor 5a; Provisional

 Score =  132 bits (333), Expect = 2e-40
 Identities = 61/134 (45%), Positives = 85/134 (63%), Gaps = 7/134 (5%)

Query: 1   MSDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
           MSDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK  
Sbjct: 1   MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 60

Query: 60  FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED------GFVSLLTENGNTKD 113
            V  DIF G +LED  PS+HN +VP V    Y ++DI  +        +SL+ + G +++
Sbjct: 61  IVATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGESRE 120

Query: 114 DLRLPTDENLLSQV 127
           DL +P D  L +Q+
Sbjct: 121 DLDMPPDAALATQI 134

Length = 166

>gnl|CDD|129148 TIGR00037, eIF_5A, translation elongation factor IF5A

 Score =  130 bits (329), Expect = 2e-40
 Identities = 49/103 (47%), Positives = 64/103 (62%), Gaps = 1/103 (0%)

Query: 16  ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
            S T   Q   +R  GY+VI GRPCK+V++STSK GKHGHAK   V I IF GKKLE + 
Sbjct: 1   MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVS 60

Query: 76  PSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118
           PS+   +VP V R +YQ++ I   G V L+  +    D+L +P
Sbjct: 61  PSTSKVEVPIVDRREYQVLAI-MGGMVQLMDLDTYETDELPIP 102

Recent work (2009) changed the view of eIF5A in eukaryotes and aIF5A in archaea, hypusine-containing proteins, from translation initiation factor to translation elongation factor [Protein synthesis, Translation factors]. Length = 130

>gnl|CDD|223309 COG0231, Efp, Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

 Score = 88.4 bits (220), Expect = 1e-23
 Identities = 30/84 (35%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 19  TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
                A  +RK  YIVI G P  VVE+S  K GK G A       ++F GKK+E    + 
Sbjct: 1   MAMISASELRKGLYIVIDGEPYVVVEISHVKPGKGG-AFVRVKLKNLFTGKKVEKTFKAD 59

Query: 79  HNCDVPHVTRTDYQLIDISEDGFV 102
              +V  V R   Q + I  D +V
Sbjct: 60  DKVEVAIVERKTAQYLYIDGDFYV 83

Length = 131

>gnl|CDD|235193 PRK03999, PRK03999, translation initiation factor IF-5A; Provisional

 Score = 81.9 bits (203), Expect = 3e-21
 Identities = 31/79 (39%), Positives = 46/79 (58%)

Query: 21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN 80
            + G +++  Y+VI G PCK+VE+S SK GKHG AK   V I IF+G+K   + P    
Sbjct: 5  QVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAK 64

Query: 81 CDVPHVTRTDYQLIDISED 99
           +VP + +   Q++ I  D
Sbjct: 65 VEVPIIEKKTGQVLSIMGD 83

Length = 129

>gnl|CDD|216413 pfam01287, eIF-5a, Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold

 Score = 69.9 bits (172), Expect = 3e-17
 Identities = 24/37 (64%), Positives = 30/37 (81%)

Query: 85  HVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 121
            V RT+YQLIDIS DGF+SL+ E+G TK+DL+LP  E
Sbjct: 1   IVKRTEYQLIDISGDGFLSLMDEDGETKEDLKLPDGE 37

eIF5A, previously thought to be an initiation factor, has been shown to be required for peptide chain elongation in yeast. Length = 69

>gnl|CDD|239914 cd04468, S1_eIF5A, S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain

 Score = 63.3 bits (155), Expect = 1e-14
 Identities = 21/36 (58%), Positives = 30/36 (83%), Gaps = 1/36 (2%)

Query: 86  VTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 121
           V RT+YQLIDI +DGF+SL+ ++G T++DL+LP  E
Sbjct: 1   VKRTEYQLIDI-DDGFLSLMDDDGETREDLKLPEGE 35

eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed. Length = 69

>gnl|CDD|213496 TIGR00038, efp, translation elongation factor P

 Score = 37.4 bits (88), Expect = 5e-04
 Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 7/79 (8%)

Query: 27  IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHNCDV 83
           +RK   I + G P  V+E    K GK G A   FV +   ++  GK LE    S    + 
Sbjct: 6   LRKGLVIELDGEPYVVLEFEHVKPGK-GQA---FVRVKLKNLLTGKVLEKTFRSGEKVEK 61

Query: 84  PHVTRTDYQLIDISEDGFV 102
             V   + Q +    D +V
Sbjct: 62  ADVEEREMQYLYKDGDSYV 80

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria [Protein synthesis, Translation factors]. Length = 184

>gnl|CDD|234788 PRK00529, PRK00529, elongation factor P; Validated

 Score = 35.0 bits (82), Expect = 0.004
 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 7/72 (9%)

Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
          A  +RK   I I G P  V+E    K GK G A   FV     ++  G  +E    +   
Sbjct: 4  ANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQA---FVRTKLKNLLTGSVVEKTFKAGDK 59

Query: 81 CDVPHVTRTDYQ 92
           +   V R + Q
Sbjct: 60 VERADVERREMQ 71

Length = 186

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
PLN03107	159	eukaryotic translation initiation factor 5A; Provi	100.0
TIGR00037	130	eIF_5A translation initiation factor eIF-5A. Obser	100.0
PTZ00328	166	eukaryotic initiation factor 5a; Provisional	100.0
COG0231	131	Efp Translation elongation factor P (EF-P)/transla	100.0
PRK03999	129	translation initiation factor IF-5A; Provisional	100.0
PRK12426	185	elongation factor P; Provisional	100.0
PRK14578	187	elongation factor P; Provisional	100.0
PRK04542	189	elongation factor P; Provisional	100.0
KOG3271	156	consensus Translation initiation factor 5A (eIF-5A	100.0
TIGR02178	186	yeiP elongation factor P-like protein YeiP. This m	100.0
PRK00529	186	elongation factor P; Validated	99.98
TIGR00038	184	efp translation elongation factor P. function: inv	99.98
PF08207	58	EFP_N: Elongation factor P (EF-P) KOW-like domain;	99.88
PF01132	55	EFP: Elongation factor P (EF-P) OB domain; InterPr	99.01
cd04470	61	S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elo	99.0
cd04463	55	S1_EF_like S1_EF_like: EF-like, S1-like RNA-bindin	98.79
PF01287	69	eIF-5a: Eukaryotic elongation factor 5A hypusine,	98.35
cd04467	57	S1_aIF5A S1_aIF5A: Archaeal translation Initiation	98.3
cd04468	69	S1_eIF5A S1_eIF5A: Eukaryotic translation Initiati	97.71
cd04469	75	S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain.	97.43
COG1499	355	NMD3 NMD protein affecting ribosome stability and	97.31

>PLN03107 eukaryotic translation initiation factor 5A; Provisional

Probab=100.00  E-value=2.2e-44  Score=271.40  Aligned_cols=124  Identities=85%  Similarity=1.324  Sum_probs=115.0

Q ss_pred             CCccccccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCe
Q 033076            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (128)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~   80 (128)
                      |++.+++|+ +++||+|.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|+++
T Consensus         1 ~~~~~~~~~-~~~~~~~~t~m~~~~~lKkG~~I~~~g~pc~V~e~~~~KpGKHG~A~vr~k~knl~TG~k~e~~f~s~~~   79 (159)
T PLN03107          1 MSDEEHHFE-SADAGASKTYPQQAGTIRKGGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHN   79 (159)
T ss_pred             CCccccccc-ccccCCCceeccchHhccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEecCCCE
Confidence            788677999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEEeeeEEEEecCCceEEEecC--CCCeEEeeeCCC-Ccchhccc
Q 033076           81 CDVPHVTRTDYQLIDISEDGFVSLLTE--NGNTKDDLRLPT-DENLLSQV  127 (128)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~~~~fMD~--etyeq~~i~lp~-~~~l~~k~  127 (128)
                      +++|+|++++|||||+|++++|+|||+  ++|||  ++||. .++|.+||
T Consensus        80 ve~~~ve~~~~qyly~dgd~y~~fMD~~get~eq--i~v~~~~~el~~~i  127 (159)
T PLN03107         80 CDVPHVNRTDYQLIDISEDGFVSLMDESGNTKDD--LKLPTEDDTLAEQI  127 (159)
T ss_pred             EEEEEEEEEEEEEEEEcCCceEEEEcCCCCccee--EEccCcchHHHHHH
Confidence            999999999999999998844699999  58888  56664 45787776

>TIGR00037 eIF_5A translation initiation factor eIF-5A

Probab=100.00  E-value=6.5e-42  Score=250.45  Aligned_cols=109  Identities=45%  Similarity=0.754  Sum_probs=104.3

Q ss_pred             cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (128)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY   95 (128)
                      +|.|+++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|++++++|.|++++|||||
T Consensus         1 ~~~~~~~~~~~irkG~~i~~~g~p~~V~e~~~~kpGkhG~A~vr~k~knl~tG~~~e~~f~s~~~ve~~~ve~~~~qylY   80 (130)
T TIGR00037         1 MSATKQVQVSALRVGGYVVIDGRPCKIVDISTSKPGKHGHAKARVVAIGIFTGKKLEFVSPSTSKVEVPIVDRREYQVLA   80 (130)
T ss_pred             CCcceeccHHHccCCCEEEECCEEEEEEEEEecCCCCCCcEEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEEEEEEEE
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           96 ISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        96 ~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      +||+ .|+|||+|||||++|++|.  +++++|
T Consensus        81 ~dg~-~~~fMd~etyeq~~i~~~~--~~~~~L  109 (130)
T TIGR00037        81 IMGG-MVQLMDLDTYETDELPIPE--ELGDSL  109 (130)
T ss_pred             ecCC-EEEEEcCCCcEEEEecCCh--hHHHHh
Confidence            9987 8999999999999999995  677765

Observed in eukaryotes and archaea.

>PTZ00328 eukaryotic initiation factor 5a; Provisional

Probab=100.00  E-value=2.2e-39  Score=244.78  Aligned_cols=127  Identities=48%  Similarity=0.902  Sum_probs=120.0

Q ss_pred             CCcccccccc-ccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCC
Q 033076            1 MSDEEHHFES-KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSH   79 (128)
Q Consensus         1 ~~~~~~~~~~-~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d   79 (128)
                      |||.+++|++ +++|++|.||+++++.||+|.+|+|+|+||+|++++++||||||+|++++.+.+||||+++|...|+++
T Consensus         1 m~d~~~~f~~~~~~~gas~t~p~q~~~LkkG~yvvIkGrPCKIveistSKtGKHGhAK~~ivaidIFTgkK~edi~Ps~h   80 (166)
T PTZ00328          1 MSDEDHDFSHQGGGDNASKTYPLPAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTH   80 (166)
T ss_pred             CCccccccccccCCCCCCceecccccceeECCEEEECCeeeEEEEEecCCCCcCCceEEEEEEEecCCCCEEeeecCccc
Confidence            8887789995 599999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eeecceEEEeeeEEEEecCC------ceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           80 NCDVPHVTRTDYQLIDISED------GFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        80 ~ve~~~ve~~~~qylY~dgd------~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      ++++|+|+|++||+|.+++|      |++.+||+++|++++|+||+.++|+++|
T Consensus        81 nv~VP~V~r~~yqli~I~~d~~~~~~g~v~LMd~~g~~k~dl~lp~~~el~~~i  134 (166)
T PTZ00328         81 NVEVPFVKTFTYSVLDIQPNEDPSLPAHLSLMDDEGESREDLDMPPDAALATQI  134 (166)
T ss_pred             eeEeeeEEeeEEEEEEEcCCCcccccceEEEEcCCCCeeecccCCChhHHHHHH
Confidence            99999999999999999876      6899999999999999999756766654

>COG0231 Efp Translation elongation factor P (EF-P)/translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.8e-38  Score=229.57  Aligned_cols=106  Identities=28%  Similarity=0.338  Sum_probs=99.1

Q ss_pred             EEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCC
Q 033076           20 FPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (128)
Q Consensus        20 ~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd   99 (128)
                      .++++++||+|++|++||+||+|++++|+||||| +|++|+++|||+||++++.+|+++++++.|.|+++++||||.||+
T Consensus         2 ~~i~~~~lr~G~~i~~dg~~~~V~~~~~~KpGKg-~a~vrvk~k~l~tG~~~e~~f~~~~kve~a~ie~~~~q~lY~dg~   80 (131)
T COG0231           2 AMISASELRKGLYIVIDGEPYVVVEISHVKPGKG-GAFVRVKLKNLFTGKKVEKTFKADDKVEVAIVERKTAQYLYIDGD   80 (131)
T ss_pred             ceeeHHHccCCCEEEECCeEEEEEEEEEccCCCC-CcEEEEEEEEccCCCEEEEEEcCCCEEEEeEEeeeeEEEEEcCCC
Confidence            4789999999999999999999999999999995 669999999999999999999999999999999999999999998


Q ss_pred             ceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076          100 GFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus       100 ~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                       .|+|||+|||||++|+.|.-++....|
T Consensus        81 -~~~FMD~etyeq~~v~~~~~~d~~~~l  107 (131)
T COG0231          81 -FYVFMDLETYEQYELPKDQIGDAAKFL  107 (131)
T ss_pred             -eEEEccCCCceEEEecchhhhhHHHhc
Confidence             899999999999999998766665544

>PRK03999 translation initiation factor IF-5A; Provisional

Probab=100.00  E-value=1.9e-36  Score=221.34  Aligned_cols=97  Identities=35%  Similarity=0.662  Sum_probs=94.6

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~  100 (128)
                      ++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||++++.+|+++++++.|.|++++|||||.|++ 
T Consensus         5 ~~~~~~lrkG~~i~~~g~p~~V~~~~~~kpGkhg~a~vr~k~knL~tG~~~e~~~~s~d~~e~~~ve~~~~qylY~dg~-   83 (129)
T PRK03999          5 QVEVGELKEGSYVVIDGEPCKIVEISKSKPGKHGSAKARIVAIGIFDGQKRSLVQPVDAKVEVPIIEKKTGQVLSIMGD-   83 (129)
T ss_pred             cccHHHccCCCEEEECCEEEEEEEEEeecCCCCCcEEEEEEEEECCCCCEEEEEecCCCceeeeeEEeEEEEEEEecCC-
Confidence            6889999999999999999999999999999999999999999999999999999999999999999999999999987 


Q ss_pred             eEEEecCCCCeEEeeeCC
Q 033076          101 FVSLLTENGNTKDDLRLP  118 (128)
Q Consensus       101 ~~~fMD~etyeq~~i~lp  118 (128)
                      +|+|||+|||||++|+.|
T Consensus        84 ~~~fMd~eTyeq~~i~~~  101 (129)
T PRK03999         84 VVQLMDLETYETFEIPIP  101 (129)
T ss_pred             EEEEecCCCceEEEecCC
Confidence            899999999999999887

>PRK12426 elongation factor P; Provisional

Probab=100.00  E-value=3.7e-35  Score=225.85  Aligned_cols=94  Identities=14%  Similarity=0.052  Sum_probs=90.1

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~  100 (128)
                      ++++++||+|++|+++|+||.|++++|+|||| |+|++|+|+|||.||+++|+||+++++++.+.|+++++||||.||+ 
T Consensus         1 m~~~~dik~G~~i~~~g~~~~V~~~~h~kPGk-g~A~vr~klknl~tG~~~e~tf~s~ek~e~a~ve~~~~qylY~dg~-   78 (185)
T PRK12426          1 MVLSSQLSVGMFISTKDGLYKVVSVSKVTGPK-GETFIKVSLQAADSDVVVERNFKAGQEVKEAQFEPRNLEYLYLEGD-   78 (185)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEecCCC-CceEEEEEEEEcCCCCeEEEEECCCCeEEEeEEEeeEeEEEEECCC-
Confidence            36799999999999999999999999999999 8999999999999999999999999999999999999999999998 


Q ss_pred             eEEEecCCCCeEEeee
Q 033076          101 FVSLLTENGNTKDDLR  116 (128)
Q Consensus       101 ~~~fMD~etyeq~~i~  116 (128)
                      .|+|||++||||+.|+
T Consensus        79 ~~~FMd~etyeQi~i~   94 (185)
T PRK12426         79 EYLFLDLGNYDKIYIP   94 (185)
T ss_pred             eEEEecCCCceEEEeC
Confidence            7999999999996664

>PRK14578 elongation factor P; Provisional

Probab=100.00  E-value=6e-34  Score=219.45  Aligned_cols=96  Identities=14%  Similarity=0.199  Sum_probs=90.3

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCC-cccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCC
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKH-GHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~-G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd   99 (128)
                      ++++++||+|++|+++|+||+|++++|+|||++ |+|++|+|+|||+||+++|++|+++++++.|.|+++++||||.||+
T Consensus         1 m~~~~dik~G~~i~~dg~~~~V~~~~~~kpg~~g~~a~vr~klknl~tG~~~e~tf~s~d~ve~a~ve~~~~qylY~dg~   80 (187)
T PRK14578          1 MYTTSDFKKGLVIQLDGAPCLLLDVTFQSPSARGANTMVKTKYRNLLTGQVLEKTFRSGDKVEEADFERHKGQFLYADGD   80 (187)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEEcCCCCCCceEEEEEEEECCCCCEEEEEECCCCEEEEeEEEEeEeEEEEeCCC
Confidence            367899999999999999999999999999885 4679999999999999999999999999999999999999999998


Q ss_pred             ceEEEecCCCCeEEeeeC
Q 033076          100 GFVSLLTENGNTKDDLRL  117 (128)
Q Consensus       100 ~~~~fMD~etyeq~~i~l  117 (128)
                       .|+|||++||||+.|+.
T Consensus        81 -~~~FMD~etyEQ~~i~~   97 (187)
T PRK14578         81 -RGVFMDLETYEQFEMEE   97 (187)
T ss_pred             -EEEEecCCCcEEEEecH
Confidence             79999999999977754

>PRK04542 elongation factor P; Provisional

Probab=100.00  E-value=7.3e-34  Score=219.29  Aligned_cols=95  Identities=18%  Similarity=0.214  Sum_probs=89.7

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecC-CCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCC
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKT-GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISED   99 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kp-GK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd   99 (128)
                      ++++++||+|++|+++|+||+|++++|+|| ||+|+|++|+|+|||.||+++++||+|+++++.+.|++++|||||.||+
T Consensus         1 mi~~~dik~G~~i~~~g~~~~V~~~~h~kp~Gkg~~a~vr~klknl~tG~~~e~tfrs~ekve~a~~~~~~~qylY~dg~   80 (189)
T PRK04542          1 MPKANEIKKGMVVEYNGKLLLVKDIDRQSPSGRGGATLYKMRFYDVRTGLKVEERFKGDDILDTVDLTRRPVTFSYIDGD   80 (189)
T ss_pred             CCchhhcCCCCEEEECCEEEEEEEEEEECCCCCCcceEEEEEEEEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCC
Confidence            468999999999999999999999999999 7955679999999999999999999999999999999999999999988


Q ss_pred             ceEEEecCCCCeEEeee
Q 033076          100 GFVSLLTENGNTKDDLR  116 (128)
Q Consensus       100 ~~~~fMD~etyeq~~i~  116 (128)
                       .|+|||++||||+.|+
T Consensus        81 -~~~FMd~etyEQ~~i~   96 (189)
T PRK04542         81 -EYVFMDNEDYTPYTFK   96 (189)
T ss_pred             -EEEEecCCCceEEEEC
Confidence             7999999999996665

>KOG3271 consensus Translation initiation factor 5A (eIF-5A) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=1.4e-34  Score=213.71  Aligned_cols=124  Identities=69%  Similarity=1.099  Sum_probs=119.9

Q ss_pred             CCccccccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCe
Q 033076            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (128)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~   80 (128)
                      |++.+++|+ .++||++.||+.+++.||++.+|+++|+||+|||.+.+|.||||+|++++..++||||+++|..++|+++
T Consensus         1 Msd~~~~Fe-~~dagas~t~p~q~salrkNG~vviK~rpckivEmSTsKtGKHGhAKvh~vaidifTgkk~edI~psthn   79 (156)
T KOG3271|consen    1 MSDEEHRFE-TGDAGASATYPMQCSALRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKVHIVAIDIFTGKKLEDICPSTHN   79 (156)
T ss_pred             CCccccccc-cCCCcccccccchhhheeeCCEEEEcCCCceEEEeecccCCcCCceEEEEEEEEeecCcccccccCCCCc
Confidence            899999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           81 CDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      +++|+++|.+||++.++++ ++.||+++++...++.+|+++ |.++|
T Consensus        80 ~dVp~vkr~~yqLidIsd~-~~sl~t~sG~~kdDlklp~~e-l~~~i  124 (156)
T KOG3271|consen   80 MDVPVVKRVDYQLIDISDG-YLSLMTDSGETKDDLKLPEGE-LGNQI  124 (156)
T ss_pred             cccCccccceeEEEEecCC-eEEEEcCCCCcchhccCcchh-HHHHH
Confidence            9999999999999999876 999999999999999999976 77665

>TIGR02178 yeiP elongation factor P-like protein YeiP

Probab=100.00  E-value=1.6e-32  Score=211.38  Aligned_cols=92  Identities=15%  Similarity=0.227  Sum_probs=86.9

Q ss_pred             cccccCceEEEECCeeEEEEEeeEecCCCCccc-EEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCceE
Q 033076           24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHA-KCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFV  102 (128)
Q Consensus        24 ~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A-~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~~  102 (128)
                      +++||+|++|+++|+||+|++++|+|||++|+| ++|+|+|||.||+++++||+|+|+++.++|+++++||||.||+ .|
T Consensus         2 ~~~lk~G~~i~~dg~~~~V~~~~~~kpg~~ga~~~vk~klknl~tG~~~e~tf~s~e~ve~a~le~~~~qylY~dg~-~~   80 (186)
T TIGR02178         2 ASEMKKGSIVEYNGKTLLIKDIQRSSPQGRGGNVRYKFRMYDVPTGSKVEERFKADDMLDTVELLRREASFSYKDGE-EY   80 (186)
T ss_pred             cccccCCCEEEECCEEEEEEEEEEECCCCCCCcEEEEEEEeEcCCCCeEEEEECCCCeEEEEEEEEeEeEEEEeCCC-eE
Confidence            789999999999999999999999999885555 8999999999999999999999999999999999999999998 79


Q ss_pred             EEecCCCCeEEeee
Q 033076          103 SLLTENGNTKDDLR  116 (128)
Q Consensus       103 ~fMD~etyeq~~i~  116 (128)
                      +|||++||||+.|+
T Consensus        81 ~FMD~etyEQ~~i~   94 (186)
T TIGR02178        81 VFMDEEDYTPYTFD   94 (186)
T ss_pred             EEccCCCcEEEEeC
Confidence            99999999997664

This model represents the family of Escherichia coli protein YeiP, a close homolog of elongation factor P (TIGR00038) and probably itself a translation factor. Member of this family are found only in some Gammaproteobacteria, including E. coli and Vibrio cholerae.

>PRK00529 elongation factor P; Validated

Probab=99.98  E-value=4.8e-32  Score=208.22  Aligned_cols=95  Identities=21%  Similarity=0.258  Sum_probs=90.6

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~  100 (128)
                      ++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||++++.+|+++++++.|.++++++||||.|++ 
T Consensus         1 ~~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~vrvk~knL~tG~~~e~~f~~~e~ve~~~ve~~~~q~ly~dgd-   78 (186)
T PRK00529          1 MISANDLRKGLVIEIDGEPYVVLEFEHVKPGK-GQAFVRTKLKNLLTGSVVEKTFKAGDKVERADVERREMQYLYNDGD-   78 (186)
T ss_pred             CcchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCeEEEEeCCCCEEEeccEEeEEEEEEEECCC-
Confidence            36899999999999999999999999999999 8999999999999999999999999999999999999999999988 


Q ss_pred             eEEEecCCCCeEEeeeC
Q 033076          101 FVSLLTENGNTKDDLRL  117 (128)
Q Consensus       101 ~~~fMD~etyeq~~i~l  117 (128)
                      .|+|||+|||||++|+.
T Consensus        79 ~~~fMD~etyeq~~l~~   95 (186)
T PRK00529         79 GYVFMDTETYEQIEVPA   95 (186)
T ss_pred             EEEEecCCCceeeEcCH
Confidence            69999999999976653

>TIGR00038 efp translation elongation factor P

Probab=99.98  E-value=8e-32  Score=206.77  Aligned_cols=94  Identities=23%  Similarity=0.296  Sum_probs=89.9

Q ss_pred             EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCce
Q 033076           22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF  101 (128)
Q Consensus        22 i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~  101 (128)
                      +.+++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||++++.+|+++++++.+.++++++||||.|++ .
T Consensus         1 ~~a~~ik~G~~I~~~g~~~~V~~~~~~kpGk-g~A~~rvk~knL~tG~~~e~~f~~~~kve~~~~e~~~~q~ly~dgd-~   78 (184)
T TIGR00038         1 ISANDLRKGLVIELDGEPYVVLEFEHVKPGK-GQAFVRVKLKNLLTGKVLEKTFRSGEKVEKADVEEREMQYLYKDGD-S   78 (184)
T ss_pred             CchhhccCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEcccEEeEEEEEEEECCC-E
Confidence            4689999999999999999999999999999 8999999999999999999999999999999999999999999988 6


Q ss_pred             EEEecCCCCeEEeeeC
Q 033076          102 VSLLTENGNTKDDLRL  117 (128)
Q Consensus       102 ~~fMD~etyeq~~i~l  117 (128)
                      |+|||++||||++|+.
T Consensus        79 ~~fMD~etyeq~~i~~   94 (184)
T TIGR00038        79 YVFMDTETYEQIELPK   94 (184)
T ss_pred             EEEeCCCCccceEcCH
Confidence            9999999999977653

function: involved in peptide bond synthesis. stimulate efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase (by similarity). The trusted cutoff of this model is set high enough to exclude members of TIGR02178, an EFP-like protein of certain Gammaproteobacteria.

>PF08207 EFP_N: Elongation factor P (EF-P) KOW-like domain; InterPro: IPR013185 This entry represents the N-terminal domain of homologues of elongation factor P, which probably are translation initiation factors

Probab=99.88  E-value=2.4e-22  Score=128.52  Aligned_cols=58  Identities=29%  Similarity=0.379  Sum_probs=53.4

Q ss_pred             ecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCee
Q 033076           23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC   81 (128)
Q Consensus        23 ~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~v   81 (128)
                      +|++||+|++|+++|+||.|++++|++||| |+|+|++++|||.||+++|.+|+++|+|
T Consensus         1 sa~dlr~G~~i~~~g~~~~V~~~~~~k~gk-g~a~v~~klknl~tG~~~e~tf~s~d~v   58 (58)
T PF08207_consen    1 SASDLRKGMVIEIDGEPYVVLDFQHVKPGK-GGAFVRVKLKNLRTGSKVEKTFRSGDKV   58 (58)
T ss_dssp             EGGG--TTSEEEETTEEEEEEEEEEECCTT-SSSEEEEEEEETTTTEEEEEEEETT-EE
T ss_pred             CHHHccCCCEEEECCEEEEEEEEEEECCCC-CCeEEEEEEEECCCCCEEEEEECCCCcC
Confidence            589999999999999999999999999999 8999999999999999999999999986

; PDB: 3TRE_A 1YBY_A 1IZ6_B 1UEB_B 3HUW_V 3HUY_V 3A5Z_H 3OYY_B.

>PF01132 EFP: Elongation factor P (EF-P) OB domain; InterPro: IPR001059 Elongation factor P (EF-P) is a prokaryotic protein translation factor required for efficient peptide bond synthesis on 70S ribosomes from fMet-tRNAfMet []

Probab=99.01  E-value=4.3e-10  Score=71.02  Aligned_cols=28  Identities=11%  Similarity=0.134  Sum_probs=23.7

Q ss_pred             EeeeEEEEecCCceEEEecCCCCeEEeee
Q 033076           88 RTDYQLIDISEDGFVSLLTENGNTKDDLR  116 (128)
Q Consensus        88 ~~~~qylY~dgd~~~~fMD~etyeq~~i~  116 (128)
                      +|++||||.||+ .|+|||++||||+.|+
T Consensus         1 ~r~~qylY~dgd-~~~FMd~etyeQi~v~   28 (55)
T PF01132_consen    1 RREMQYLYKDGD-NYVFMDTETYEQIEVP   28 (55)
T ss_dssp             EEEEEEEEEESS-EEEEEETTT--EEEEE
T ss_pred             CceEEEEEeCCC-EEEEecCCCceEEEec
Confidence            689999999998 6999999999997776

Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase. This entry reresents the central domain of elongation factor P and its homologues. It forms an oligonucleotide-binding (OB) fold, though it is not clear if this region is involved in binding nucleic acids [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation; PDB: 1YBY_A 3A5Z_H 3TRE_A 1UEB_B 3HUW_V 3HUY_V 3OYY_B.

>cd04470 S1_EF-P_repeat_1 S1_EF-P_repeat_1: Translation elongation factor P (EF-P), S1-like RNA-binding domain, repeat 1

Probab=99.00  E-value=3.9e-10  Score=72.66  Aligned_cols=29  Identities=10%  Similarity=0.105  Sum_probs=25.9

Q ss_pred             EEeeeEEEEecCCceEEEecCCCCeEEeee
Q 033076           87 TRTDYQLIDISEDGFVSLLTENGNTKDDLR  116 (128)
Q Consensus        87 e~~~~qylY~dgd~~~~fMD~etyeq~~i~  116 (128)
                      +++++||||.||+ .|+|||++||||+.|+
T Consensus         1 e~~~~qylY~dg~-~~~FMd~etyeQ~~i~   29 (61)
T cd04470           1 EEREMQYLYKDGD-NYVFMDTETYEQIELP   29 (61)
T ss_pred             CCceEEEEEeCCC-EEEEeCCCCceEEEEC
Confidence            4789999999998 7999999999996665

EF-P stimulates the peptidyltransferase activity in the prokaryotic 70S ribosome. EF-P enhances the synthesis of certain dipeptides with N-formylmethionyl-tRNA and puromycine in vitro. EF-P binds to both the 30S and 50S ribosomal subunits. EF-P binds near the streptomycine binding site of the 16S rRNA in the 30S subunit. EF-P interacts with domains 2 and 5 of the 23S rRNA. The L16 ribosomal protein of the 50S or its N-terminal fragment are required for EF-P mediated peptide bond synthesis, whereas L11, L15, and L7/L12 are not required in this reaction, suggesting that EF-P may function at a different ribosomal site than most other translation factors. EF-P is essential for cell viability and is required for protein synthesis. EF-P is mainly present in bacteria. The EF-P homologs in archaea and eukaryotes are the initiation factors aIF5A and eIF5A, respectively. EF-P

>cd04463 S1_EF_like S1_EF_like: EF-like, S1-like RNA-binding domain

Probab=98.79  E-value=5.7e-09  Score=65.25  Aligned_cols=29  Identities=14%  Similarity=0.138  Sum_probs=25.8

Q ss_pred             eeeEEEEecCCceEEEecCCCCeEEeeeCC
Q 033076           89 TDYQLIDISEDGFVSLLTENGNTKDDLRLP  118 (128)
Q Consensus        89 ~~~qylY~dgd~~~~fMD~etyeq~~i~lp  118 (128)
                      |++||||.||+ .|+|||++||||++++.+
T Consensus         1 ~~~qylY~dg~-~~~fMd~etyeq~~v~~~   29 (55)
T cd04463           1 RELQVLDIQGS-KPVTMDLETYEVVQVPPP   29 (55)
T ss_pred             CCEEEEEcCCC-EeEEecCCCceEEEeCHH
Confidence            57999999987 799999999999888764

The EF-like superfamily contains the bacterial translation elongation factor P and its archeal and eukaryotic homologs, aIF5A and eIF5A. All proteins in this superfamily contain an S1 domain, which binds RNA or single-stranded DNA and often interacts with the ribosome. Hex-1, the SI-like domain of which is also found in this group, is structurally homologous to eIF5A and might have evolved from an ancestral eIF5A through gene duplication.

>PF01287 eIF-5a: Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold; InterPro: IPR020189 A five-stranded beta-barrel was first noted as a common structure among four proteins binding single-stranded nucleic acids (staphylococcal nuclease and aspartyl-tRNA synthetase) or oligosaccharides (B subunits of enterotoxin and verotoxin-1), and has been termed the oligonucleotide/oligosaccharide binding motif, or OB fold, a five-stranded beta-sheet coiled to form a closed beta-barrel capped by an alpha helix located between the third and fourth strands []

Probab=98.35  E-value=6.4e-07  Score=59.25  Aligned_cols=40  Identities=43%  Similarity=0.745  Sum_probs=31.8

Q ss_pred             eEEEeeeEEEEecCCceEEEecCCCCeEEe-eeCCCCcchhcc
Q 033076           85 HVTRTDYQLIDISEDGFVSLLTENGNTKDD-LRLPTDENLLSQ  126 (128)
Q Consensus        85 ~ve~~~~qylY~dgd~~~~fMD~etyeq~~-i~lp~~~~l~~k  126 (128)
                      +|+|++||.+.+++||++++|| ++++..+ ++||++ +|.++
T Consensus         1 ~V~r~eyqli~I~~Dg~lsLMd-e~get~eDl~lP~~-el~~e   41 (69)
T PF01287_consen    1 IVKRKEYQLIDIDGDGFLSLMD-EDGETREDLKLPDG-ELGEE   41 (69)
T ss_dssp             -EEEEEEEEEEEETTTEEEEEE-TTS-EEEEEECCSH-HHHHH
T ss_pred             CeEEEEEEEEEEccCcEEEEEc-CCCCeeccEEeccc-chhHH
Confidence            4899999999999888999999 7777766 999964 45443

Two ribosomal proteins, S17 and S1, are members of this class, and have different variations of the OB fold theme. Comparisons with other OB fold nucleic acid binding proteins suggest somewhat different mechanisms of nucleic acid recognition in each case []. There are many nucleic acid-binding proteins that contain domains with this OB-fold structure, including anticodon-binding tRNA synthetases, ssDNA-binding proteins (CDC13, telomere-end binding proteins), phage ssDNA-binding proteins (gp32, gp2.5, gpV), cold shock proteins, DNA ligases, RNA-capping enzymes, DNA replication initiators and RNA polymerase subunit RBP8 []. This entry represents the RNA-binding domain of translation elongation factor IF5A [].; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0043022 ribosome binding, 0006452 translational frameshifting, 0045901 positive regulation of translational elongation, 0045905 positive regulation of translational termination; PDB: 1IZ6_B 3CPF_A 1KHI_A 1BKB_A 1XTD_A 3ER0_A 3HKS_B 1X6O_A 2EIF_A 1EIF_A.

>cd04467 S1_aIF5A S1_aIF5A: Archaeal translation Initiation Factor 5A (aIF5A), S1-like RNA-binding domain

Probab=98.30  E-value=1.1e-06  Score=56.27  Aligned_cols=33  Identities=21%  Similarity=0.341  Sum_probs=30.7

Q ss_pred             EEEeeeEEEEecCCceEEEecCCCCeEEeeeCCC
Q 033076           86 VTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT  119 (128)
Q Consensus        86 ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~  119 (128)
                      |+||..|.++++|+ ...+||+|||+.+++++|+
T Consensus         1 i~k~~aqVisi~g~-~vQlMD~eTYeT~ev~~p~   33 (57)
T cd04467           1 IERKTGQVLSIMGD-VVQLMDLETYETFEVPIPE   33 (57)
T ss_pred             CcceEEEEEEEcCC-EEEEeccccceeEEEecch
Confidence            57999999999988 8999999999999999994

aIF5A is a homolog of eukaryotic eIF5A. IF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is a post-translationally modified lysine and is essential for IF5A function. In yeast, eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the cold-shock domain which binds RNA. Moreover, IF5A prefers binding to the actively translating ribosome. This evidence suggests that IF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>cd04468 S1_eIF5A S1_eIF5A: Eukaryotic translation Initiation Factor 5A (eIF5A), S1-like RNA-binding domain

Probab=97.71  E-value=2.3e-05  Score=51.95  Aligned_cols=40  Identities=50%  Similarity=0.973  Sum_probs=34.6

Q ss_pred             EEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           86 VTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        86 ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      |.|++||++.+++ |++++|+.++-.+.+++||++ +|.++|
T Consensus         1 V~R~eYqLidI~d-GflsLm~e~G~~k~DlklP~~-elg~~I   40 (69)
T cd04468           1 VKRTEYQLIDIDD-GFLSLMDDDGETREDLKLPEG-ELGKEI   40 (69)
T ss_pred             CcceeEEEEeecC-CeEEEEcCCCCcccCCcCCcH-HHHHHH
Confidence            4689999999976 699999999999999999974 577665

eIF5A is an evolutionarily conserved protein found in eukaryotes. eIF5A is the only protein known to have the unusual amino acid hypusine. Hypusine is essential for eIF5A function and is a post-translationally modified lysine. eIF5A interacts with components of the 80S ribosome and translation elongation factors 2 (eEF2) in a hypusine-dependent manner. This C-terminal S1 domain resembles the oligonucleotides-binding fold (OB fold) which binds RNA. Moreover, eIF5A prefers binding to the actively translating ribosome. This evidence suggests that eIF5A plays a role in translation elongation instead of translation initiation as previously proposed.

>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain

Probab=97.43  E-value=0.00014  Score=48.92  Aligned_cols=39  Identities=31%  Similarity=0.592  Sum_probs=33.4

Q ss_pred             EeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           88 RTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        88 ~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      .++||++.+ .||++.+||+++-.+.+++||.+++|+.+|
T Consensus         2 ~~eYqLidI-~DG~lsLM~e~G~~kdDl~lP~~~~l~~~I   40 (75)
T cd04469           2 FKQYRVLDI-QDGSIVAMTETGDVKQGLPVIDQSNLWTRL   40 (75)
T ss_pred             ceEEEEEEe-cCCeEEEEcCCCCcccCccCCCcchHHHHH
Confidence            368999999 567999999999999999999556687765

Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.

>COG1499 NMD3 NMD protein affecting ribosome stability and mRNA decay [Translation, ribosomal structure and biogenesis]

Probab=97.31  E-value=0.0019  Score=54.63  Aligned_cols=97  Identities=13%  Similarity=0.163  Sum_probs=72.2

Q ss_pred             ccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceE----
Q 033076           11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHV----   86 (128)
Q Consensus        11 ~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~v----   86 (128)
                      +|-.-...||.+-.-++++|++|.++|..+.++..    -|+      .+.++|+.|++..+.++.-...-+...+    
T Consensus       231 tgk~~yR~t~Svrip~~~~gDiV~~~~~~~~~v~~----~~~------~~~~~dl~t~e~~~~~~~~~~~~~~~~~~~~~  300 (355)
T COG1499         231 TGKRVYRFTYSVRIPEFRPGDIVSVRGRQLVLVRS----IGK------GIVVLDLETGEPVEITWSVYKRNEGKVAVKEP  300 (355)
T ss_pred             CCceEEEEEEEEECCCCCCCCEEEECCCeEEEEEE----ecC------ceEEEecccCCccccChhhcccCcceeeeccc
Confidence            45555678999999999999999999966655532    256      3899999999888887755444332222    


Q ss_pred             EEeeeEEEEecCCceEEEecCCCCeEEeeeCC
Q 033076           87 TRTDYQLIDISEDGFVSLLTENGNTKDDLRLP  118 (128)
Q Consensus        87 e~~~~qylY~dgd~~~~fMD~etyeq~~i~lp  118 (128)
                      +-+.+.++..+.+ ...|||.+|||-+++.-|
T Consensus       301 ~~~~~~vvs~~~~-~~~v~d~et~e~~~~~~~  331 (355)
T COG1499         301 RLKKAVVVSRDPS-AIQVLDPETYEARTVKGP  331 (355)
T ss_pred             cceEEEEEecCCC-ceEEEecceEEEEeccCC
Confidence            2246777777776 699999999999888765

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
3hks_A	167	Crystal Structure Of Eukaryotic Translation Initiat		4e-52
3er0_A	167	Crystal Structure Of The Full Length Eif5a From Sac		3e-42
3cpf_A	138	Crystal Structure Of Human Eukaryotic Translation I		1e-37
1x6o_A	174	Structural Analysis Of Leishmania Braziliensis Euka		2e-30
1xtd_A	174	Structural Analysis Of Leishmania Mexicana Eukaryot		1e-28
2eif_A	136	Eukaryotic Translation Initiation Factor 5a From Me		4e-13
1eif_A	135	Eukaryotic Translation Initiation Factor 5a From Me		4e-13
1bkb_A	136	Initiation Factor 5a From Archebacterium Pyrobaculu		7e-13
1iz6_A	138	Crystal Structure Of Translation Initiation Factor		2e-10
1khi_A	176	Crystal Structure Of Hex1 Length = 176		2e-06

>pdb|3HKS|A Chain A, Crystal Structure Of Eukaryotic Translation Initiation Factor Eif-5a2 From Arabidopsis Thaliana Length = 167

Iteration: 1
 Score =  199 bits (506), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 107/120 (89%), Gaps = 1/120 (0%)
Query: 8   FESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFN 67
           FE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF 
Sbjct: 16  FEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFT 74
Query: 68  GKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV 127
            KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD+ L +Q+
Sbjct: 75  AKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQM 134

>pdb|3ER0|A Chain A, Crystal Structure Of The Full Length Eif5a From Saccharomyces Cerevisiae Length = 167

Iteration: 1
 Score =  166 bits (421), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 98/121 (80%), Gaps = 2/121 (1%)
Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FE+ ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H 
Sbjct: 11  MSDEEHTFET-ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 69
Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P  
Sbjct: 70  VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEG 128
Query: 121 E 121
           E
Sbjct: 129 E 129

>pdb|3CPF|A Chain A, Crystal Structure Of Human Eukaryotic Translation Initiation Factor Eif5a Length = 138

Iteration: 1
 Score =  150 bits (380), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 84/103 (81%), Gaps = 1/103 (0%)
Query: 16  ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
            S TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI 
Sbjct: 1   GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60
Query: 76  PSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP 118
           PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP
Sbjct: 61  PSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLP 102

>pdb|1X6O|A Chain A, Structural Analysis Of Leishmania Braziliensis Eukaryotic Initiation Factor 5a Length = 174

Iteration: 1
 Score =  127 bits (318), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 63/134 (47%), Positives = 87/134 (64%), Gaps = 7/134 (5%)
Query: 1   MSDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
           MSDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK  
Sbjct: 9   MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 68
Query: 60  FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI--SED----GFVSLLTENGNTKD 113
            V  DIF G +LED  PS+HN +VP V    Y ++DI  +ED      +SL+ + G +++
Sbjct: 69  IVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE 128
Query: 114 DLRLPTDENLLSQV 127
           DL +P D  L +Q+
Sbjct: 129 DLDMPPDPALATQI 142

>pdb|1XTD|A Chain A, Structural Analysis Of Leishmania Mexicana Eukaryotic Initiation Factor 5a Length = 174

Iteration: 1
 Score =  120 bits (302), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 62/133 (46%), Positives = 84/133 (63%), Gaps = 7/133 (5%)
Query: 2   SDEEHHFESKADA-GASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           SDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK   
Sbjct: 10  SDEDHDFAHQGGGDNASKTYPXAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSI 69
Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI--SED----GFVSLLTENGNTKDD 114
           V  DIF G +LED  PS+HN +VP V    Y ++DI  +ED      +SL  + G +++D
Sbjct: 70  VATDIFTGNRLEDQAPSTHNVEVPFVKTFTYSVLDIQPNEDPSLPSHLSLXDDEGESRED 129
Query: 115 LRLPTDENLLSQV 127
           L  P D  L +Q+
Sbjct: 130 LDXPPDAALATQI 142

>pdb|2EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 136

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 24  AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83
            G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S   +V
Sbjct: 13  VGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEV 72
Query: 84  PHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENL 123
           P + R   Q++ I  D  V ++  +  T + L LP  E +
Sbjct: 73  PIIDRRKGQVLAIMGD-MVQIM--DLQTYETLELPIPEGI 109

>pdb|1EIF|A Chain A, Eukaryotic Translation Initiation Factor 5a From Methanococcus Jannaschii Length = 135

Iteration: 1
 Score = 69.7 bits (169), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/100 (37%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 24  AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83
            G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S   +V
Sbjct: 12  VGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEV 71
Query: 84  PHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENL 123
           P + R   Q++ I  D  V ++  +  T + L LP  E +
Sbjct: 72  PIIDRRKGQVLAIMGD-MVQIM--DLQTYETLELPIPEGI 108

>pdb|1BKB|A Chain A, Initiation Factor 5a From Archebacterium Pyrobaculum Aerophilum Length = 136

Iteration: 1
 Score = 68.9 bits (167), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 30/77 (38%), Positives = 47/77 (61%)
Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
          +AG +++  Y+VI G PC+VVE+  SKTGKHG AK   V + +F+G K    +P     +
Sbjct: 10 EAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVE 69
Query: 83 VPHVTRTDYQLIDISED 99
          VP + +   Q++ +S D
Sbjct: 70 VPIIEKFTAQILSVSGD 86

>pdb|1IZ6|A Chain A, Crystal Structure Of Translation Initiation Factor 5a From Pyrococcus Horikoshii Length = 138

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 30/105 (28%), Positives = 53/105 (50%), Gaps = 3/105 (2%)
Query: 23  QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
           Q   ++   YI+I   PC++V ++ S  GKHG AK     + IF+GK    + P+S   D
Sbjct: 8   QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 67
Query: 83  VPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV 127
           VP + +   Q+I I+ D   ++   +  T +   +P D  +  ++
Sbjct: 68  VPIIDKKTAQVIAITPD---TVQIMDMETYETFEVPIDTGVADEI 109

>pdb|1KHI|A Chain A, Crystal Structure Of Hex1 Length = 176

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 26/144 (18%)
Query: 3   DEEHHFESKADAGASKTFPQQAGT-----------IRKNGYIVIKGRPCKVVEVSTS-KT 50
           D++ H   +ADA    T     G+           IR    ++++GRPC+V+ +STS  T
Sbjct: 5   DDDAHGHVEADAAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAAT 64
Query: 51  GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRT-------DYQLIDISEDGFVS 103
           G+H      ++G+D+F  K+L +      N     V +T        Y+++D+ +DG + 
Sbjct: 65  GQH-----RYLGVDLFT-KQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDM-QDGSIV 117
Query: 104 LLTENGNTKDDLRLPTDENLLSQV 127
            +TE G+ K +L +    +L +++
Sbjct: 118 AMTETGDVKQNLPVIDQSSLWNRL 141

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	8e-56
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	4e-51
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	2e-47
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	5e-44
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	1e-43
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	2e-42
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	3e-41
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	1e-39
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	4e-04
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	4e-04
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	8e-04

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana} Length = 167

 Score =  170 bits (432), Expect = 8e-56
 Identities = 100/126 (79%), Positives = 113/126 (89%), Gaps = 1/126 (0%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSD+EHHFE+ +++GASKT+PQ AG IRK G+IVIK RPCKVVEVSTSKTGKHGHAKCHF
Sbjct: 9   MSDDEHHFEA-SESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHF 67

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF  KKLEDIVPSSHNCDVPHV R DYQLIDI+EDGFVSLLT++G TKDDL+LPTD
Sbjct: 68  VAIDIFTAKKLEDIVPSSHNCDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTD 127

Query: 121 ENLLSQ 126
           + L +Q
Sbjct: 128 DGLTAQ 133

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A Length = 174

 Score =  158 bits (401), Expect = 4e-51
 Identities = 61/135 (45%), Positives = 84/135 (62%), Gaps = 7/135 (5%)

Query: 1   MSDEEHHFESK-ADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCH 59
           MSDE+H F  +     ASKT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK  
Sbjct: 9   MSDEDHDFSHQGGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVS 68

Query: 60  FVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE------DGFVSLLTENGNTKD 113
            V  DIF G +LED  PS+HN +VP V    Y ++DI           +SL+ + G +++
Sbjct: 69  IVATDIFTGNRLEDQAPSTHNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESRE 128

Query: 114 DLRLPTDENLLSQVS 128
           DL +P D  L +Q+ 
Sbjct: 129 DLDMPPDPALATQIK 143

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae} Length = 167

 Score =  149 bits (376), Expect = 2e-47
 Identities = 77/121 (63%), Positives = 98/121 (80%), Gaps = 2/121 (1%)

Query: 1   MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHF 60
           MSDEEH FE+ ADAG+S T+P Q   +RKNG++VIK RPCK+V++STSKTGKHGHAK H 
Sbjct: 11  MSDEEHTFET-ADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHL 69

Query: 61  VGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD 120
           V IDIF GKKLED+ PS+HN +VP V R +YQL+DI +DGF+SL+  +G+TKDD++ P  
Sbjct: 70  VAIDIFTGKKLEDLSPSTHNMEVPVVKRNEYQLLDI-DDGFLSLMNMDGDTKDDVKAPEG 128

Query: 121 E 121
           E
Sbjct: 129 E 129

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5 Length = 176

 Score =  141 bits (355), Expect = 5e-44
 Identities = 35/143 (24%), Positives = 69/143 (48%), Gaps = 24/143 (16%)

Query: 3   DEEHHFESKAD-----------AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KT 50
           D++ H   +AD             AS+T       IR    ++++GRPC+V+ +STS  T
Sbjct: 5   DDDAHGHVEADAAPRATTGTGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAAT 64

Query: 51  GKHGHAKCHFVGIDIFNGKKLEDIVPSSHNC------DVPHVTRTDYQLIDISEDGFVSL 104
           G+H +     +G+D+F  +  E+    S+         +       Y+++D+ +DG +  
Sbjct: 65  GQHRY-----LGVDLFTKQLHEESSFVSNPAPSVVVQTMLGPVFKQYRVLDM-QDGSIVA 118

Query: 105 LTENGNTKDDLRLPTDENLLSQV 127
           +TE G+ K +L +    +L +++
Sbjct: 119 MTETGDVKQNLPVIDQSSLWNRL 141

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5 Length = 138

 Score =  138 bits (350), Expect = 1e-43
 Identities = 30/111 (27%), Positives = 52/111 (46%), Gaps = 3/111 (2%)

Query: 17  SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVP 76
                 Q   ++   YI+I   PC++V ++ S  GKHG AK     + IF+GK    + P
Sbjct: 2   GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKP 61

Query: 77  SSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV 127
           +S   DVP + +   Q+I I+ D    +   +  T +   +P D  +  ++
Sbjct: 62  TSAEVDVPIIDKKTAQVIAITPDTVQIM---DMETYETFEVPIDTGVADEI 109

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens} Length = 138

 Score =  135 bits (342), Expect = 2e-42
 Identities = 67/106 (63%), Positives = 85/106 (80%), Gaps = 1/106 (0%)

Query: 16  ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIV 75
            S TFP Q   +RKNG++V+KGRPCK+VE+STSKTGKHGHAK H VGIDIF GKK EDI 
Sbjct: 1   GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDIC 60

Query: 76  PSSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 121
           PS+HN DVP++ R D+QLI I +DG++SLL ++G  ++DLRLP  +
Sbjct: 61  PSTHNMDVPNIKRNDFQLIGI-QDGYLSLLQDSGEVREDLRLPEGD 105

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A Length = 136

 Score =  132 bits (334), Expect = 3e-41
 Identities = 36/108 (33%), Positives = 55/108 (50%), Gaps = 1/108 (0%)

Query: 17  SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVP 76
             T     G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P
Sbjct: 6   PGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAP 65

Query: 77  SSHNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLL 124
           +S   +VP + R   Q++ I  D  V ++        +L +P     L
Sbjct: 66  TSSKVEVPIIDRRKGQVLAIMGD-MVQIMDLQTYETLELPIPEGIEGL 112

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5 Length = 136

 Score =  128 bits (324), Expect = 1e-39
 Identities = 32/103 (31%), Positives = 53/103 (51%), Gaps = 3/103 (2%)

Query: 19  TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
           T   +AG +++  Y+VI G PC+VVE+  SKTGKHG AK   V + +F+G K    +P  
Sbjct: 6   TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65

Query: 79  HNCDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDE 121
              +VP + +   Q++ +S D    +   +      + +P   
Sbjct: 66  AQVEVPIIEKFTAQILSVSGDVIQLM---DMRDYKTIEVPMKY 105

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa} Length = 191

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
          A   R      I G P  + +   +K+G+   A    V +   ++  G   E +  +   
Sbjct: 7  AQEFRAGQVANINGAPWVIQKAEFNKSGR-NAA---VVKMKLKNLLTGAGTETVFKADDK 62

Query: 81 CDVPHVTRTDYQ 92
           +   + R +  
Sbjct: 63 LEPIILDRKEVT 74

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V Length = 184

 Score = 37.1 bits (87), Expect = 4e-04
 Identities = 14/72 (19%), Positives = 25/72 (34%), Gaps = 7/72 (9%)

Query: 24 AGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHN 80
             +R    + + G   + VE    K G+ G A    V     ++  G  +E    S   
Sbjct: 4  VTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGA---KVVAKFKNLETGATVERTFNSGEK 59

Query: 81 CDVPHVTRTDYQ 92
           +  +V   + Q
Sbjct: 60 LEDIYVETRELQ 71

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii} Length = 191

 Score = 36.3 bits (85), Expect = 8e-04
 Identities = 16/69 (23%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 27 IRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGI---DIFNGKKLEDIVPSSHNCDV 83
           R    +++ G PC +++    K GK G A   F  +   ++  G+ LE    S      
Sbjct: 12 FRGGLKVMVDGDPCSIIDNEFVKPGK-GQA---FNRVKFRNLKTGRVLERTFKSGETLPA 67

Query: 84 PHVTRTDYQ 92
            V   + Q
Sbjct: 68 ADVVEVEMQ 76

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
3hks_A	167	EIF-5A-2, eukaryotic translation initiation factor	100.0
1x6o_A	174	Eukaryotic initiation factor 5A; SGPP, structural	100.0
3er0_A	167	Eukaryotic translation initiation factor 5A-2; yea	100.0
3cpf_A	138	Eukaryotic translation initiation factor 5A-1; str	100.0
1bkb_A	136	Translation initiation factor 5A; 1.75A {Pyrobacul	100.0
1iz6_A	138	Initiation factor 5A; SH3-like barrel, OB fold, bi	100.0
2eif_A	136	IF-5A, protein (eukaryotic translation initiation	100.0
3a5z_B	191	EF-P, elongation factor P; aminoacyl-tRNA syntheta	100.0
1ueb_A	184	EF-P, TT0860, elongation factor P; beta barrel, ri	100.0
1yby_A	215	Translation elongation factor P; conserved hypothe	100.0
3tre_A	191	EF-P, elongation factor P; protein synthesis, tran	100.0
3oyy_A	191	EF-P, elongation factor P; translation; 1.75A {Pse	100.0
1khi_A	176	HEX1; membrane sealing, peroxisomal target, struct	99.96

>3hks_A EIF-5A-2, eukaryotic translation initiation factor 5A-2; beta barrel, alternative splicing, hypusine, protein biosynthesis; 2.30A {Arabidopsis thaliana}

Probab=100.00  E-value=7.5e-49  Score=296.55  Aligned_cols=126  Identities=79%  Similarity=1.264  Sum_probs=105.7

Q ss_pred             CCccccccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCe
Q 033076            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (128)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~   80 (128)
                      |||.+++|+ +++|++|.||||++++||+|++|+++|+||+|++++|+||||||+|+||+++|||+||+++|.+|+|+++
T Consensus         9 ~~~~~~~~~-~~~~gas~t~pi~~~dlrkG~~I~idG~P~~Vve~~~~KpGKhG~A~vr~k~knl~TGk~~E~tf~s~~k   87 (167)
T 3hks_A            9 MSDDEHHFE-ASESGASKTYPQSAGNIRKGGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTAKKLEDIVPSSHN   87 (167)
T ss_dssp             ----------------CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECSSTTCCCEEEEEEEETTTCCEEEEEEETTSE
T ss_pred             cCccccccc-ccCCCCCccEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCCCceEEEEEEEEcCCCCEEEEEEcCCCE
Confidence            899999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           81 CDVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      +++|+|++++|||||+|++++|+|||++||||++|+||++++|.++|
T Consensus        88 ve~~~ver~~~QyLY~d~d~~~~fMD~etyeQ~~l~lp~~~~lg~~i  134 (167)
T 3hks_A           88 CDVPHVNRVDYQLIDITEDGFVSLLTDSGGTKDDLKLPTDDGLTAQM  134 (167)
T ss_dssp             EEEECCEEEEEEEEEECTTSBEEEECTTSCEECCCBCCSCHHHHHHH
T ss_pred             EEeeeEEEEEEEEEEECCCCEEEEEcCCCceEEEEecCchHHHHHHH
Confidence            99999999999999997655899999999999999999875676554

>1x6o_A Eukaryotic initiation factor 5A; SGPP, structural genomics, PSI; 1.60A {Leishmania braziliensis} SCOP: b.34.5.2 b.40.4.5 PDB: 1xtd_A

Probab=100.00  E-value=2.3e-45  Score=279.04  Aligned_cols=125  Identities=48%  Similarity=0.893  Sum_probs=99.4

Q ss_pred             CCcccc--ccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCC
Q 033076            1 MSDEEH--HFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS   78 (128)
Q Consensus         1 ~~~~~~--~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~   78 (128)
                      |||..+  +|+ +++|++|.||++++++||+|++|+++|+||+|++++|+||||||+|+||+++|||+||+++|.+|+++
T Consensus         9 ~~~~~~~~~~~-~~~~~as~t~~i~a~dlrkG~~I~idG~p~~Vve~~~~KpGKgG~A~vr~k~kni~TG~k~E~tf~s~   87 (174)
T 1x6o_A            9 MSDEDHDFSHQ-GGGDNASKTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPST   87 (174)
T ss_dssp             -------------------CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETT
T ss_pred             cccccccccee-cCCCCCceeEEEEHHHccCCCEEEECCEEEEEEEEEecCCCCCCceEEEEEEEECCCCCEEEEEeCCC
Confidence            444433  899 99999999999999999999999999999999999999999988999999999999999999999999


Q ss_pred             CeeecceEEEeeeEEEEecCC------ceEEEecCCCCeEEeeeCCCCcchhcc
Q 033076           79 HNCDVPHVTRTDYQLIDISED------GFVSLLTENGNTKDDLRLPTDENLLSQ  126 (128)
Q Consensus        79 d~ve~~~ve~~~~qylY~dgd------~~~~fMD~etyeq~~i~lp~~~~l~~k  126 (128)
                      ++|++|+|++++|||||+|+|      |+|+|||++||+|++|++|++..|.++
T Consensus        88 ~kve~~~Ver~~~QyLY~dgd~~~~~~g~~~fMD~etyeq~~l~~p~~~~lgd~  141 (174)
T 1x6o_A           88 HNVEVPFVKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQ  141 (174)
T ss_dssp             SEEEEECCEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHH
T ss_pred             CEEEeeEEEEEEEEEEEecCCcccccccEEEEEcCCCceEEEeeCCchhhHHHH
Confidence            999999999999999999988      689999999999999998865246443

>3er0_A Eukaryotic translation initiation factor 5A-2; yeast, low resolution, acetylation, hypusine, phosphoprotein, protein biosynthesis; 3.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-45  Score=276.54  Aligned_cols=116  Identities=59%  Similarity=1.032  Sum_probs=101.2

Q ss_pred             CCccccccccccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCe
Q 033076            1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHN   80 (128)
Q Consensus         1 ~~~~~~~~~~~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~   80 (128)
                      |||.+++|+ +++|++|.||||+|++||+|++|+++|+||+|++++|+||||||+|+||+++|||+||+++|.+|+|+++
T Consensus        11 ~~~~~~~~~-~~~~~as~t~pi~a~dlrkG~~I~idG~p~~Vve~~~~KpGKHG~A~vr~k~knl~TG~k~E~tf~s~~k   89 (167)
T 3er0_A           11 MSDEEHTFE-TADAGSSATYPMQCSALRKNGFVVIKSRPCKIVDMSTSKTGKHGHAKVHLVAIDIFTGKKLEDLSPSTHN   89 (167)
T ss_dssp             ------------CCCCCCCEEEETTTCCTTCEEEETTEEEEEEEEEEECCSSSSCCEEEEEEEESSSCCCEEEEEESSSE
T ss_pred             ccccccccc-ccCCCCcceEEEEHHHccCCCEEEECCEEEEEEEEEEeCCCCcCceEEEEEEEEcCCCCEEEEEEcCCCc
Confidence            889999999 9999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eecceEEEeeeEEEEecCCceEEEec--CCCCeEEeeeCCCC
Q 033076           81 CDVPHVTRTDYQLIDISEDGFVSLLT--ENGNTKDDLRLPTD  120 (128)
Q Consensus        81 ve~~~ve~~~~qylY~dgd~~~~fMD--~etyeq~~i~lp~~  120 (128)
                      |++|+|++++|||||+||+ +|+|||  .++|||  ++||++
T Consensus        90 ve~~~ver~~~QyLY~dg~-~~~FMD~~~etyeq--i~l~~~  128 (167)
T 3er0_A           90 MEVPVVKRNEYQLLDIDDG-FLSLMNMDGDTKDD--VKAPEG  128 (167)
T ss_dssp             EEECCCCEEEEECCCCTTT-TCCCCCSSSCCCSC--CCCCCS
T ss_pred             cccceEEEeeEEEEEEcCC-EEEEEeCCCCeeEE--EEcCHH
Confidence            9999999999999999987 799999  889999  666653

>3cpf_A Eukaryotic translation initiation factor 5A-1; structural genomics consortium, leukemia, apoptosis, SGC, HY initiation factor, nucleus; 2.50A {Homo sapiens}

Probab=100.00  E-value=3.3e-43  Score=258.25  Aligned_cols=108  Identities=61%  Similarity=1.080  Sum_probs=97.9

Q ss_pred             cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (128)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY   95 (128)
                      +|.||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+|++++++|+|++++|||||
T Consensus         1 ~~~t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~TG~~~e~tf~s~~kve~~~v~~~~~qyly   80 (138)
T 3cpf_A            1 GSATFPMQCSALRKNGFVVLKGRPCKIVEMSTSKTGKHGHAKVHLVGIDIFTGKKYEDICPSTHNMDVPNIKRNDFQLIG   80 (138)
T ss_dssp             -CCEEEEEGGGCCTTSEEEETTEEEEEEEEEEECC----CCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEE
T ss_pred             CCccEEEEHHHCcCCCEEEECCEEEEEEEEEeccCCCCccEEEEEEEEECCCCCEEEEEeCCCCEEEeeEEEEEEEEEEE
Confidence            47899999999999999999999999999999999998899999999999999999999999999999999999999999


Q ss_pred             ecCCceEEEecCCCCeEEeeeCCCCcchhc
Q 033076           96 ISEDGFVSLLTENGNTKDDLRLPTDENLLS  125 (128)
Q Consensus        96 ~dgd~~~~fMD~etyeq~~i~lp~~~~l~~  125 (128)
                      +||+ +|+|||+|||||++|++|++ .|.+
T Consensus        81 ~dg~-~~~fMD~etyeq~~l~l~~~-~lgd  108 (138)
T 3cpf_A           81 IQDG-YLSLLQDSGEVREDLRLPEG-DLGK  108 (138)
T ss_dssp             EETT-EEEEECTTSCEECCSBCCSH-HHHH
T ss_pred             ecCC-EEEEEcCCCCeEeeecCCHH-HHHH
Confidence            9987 89999999999999989963 3443

>1bkb_A Translation initiation factor 5A; 1.75A {Pyrobaculum aerophilum} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=3e-41  Score=247.10  Aligned_cols=100  Identities=32%  Similarity=0.597  Sum_probs=98.0

Q ss_pred             eEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecC
Q 033076           19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISE   98 (128)
Q Consensus        19 t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dg   98 (128)
                      ||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.||
T Consensus         6 t~~i~~~~lrkG~~i~~~g~p~~Vve~~~~KpGKgG~A~vr~k~knl~tG~~~e~tf~s~~kve~~~ve~~~~qylY~dg   85 (136)
T 1bkb_A            6 TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVPIIEKFTAQILSVSG   85 (136)
T ss_dssp             CEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEECCCEEEEEEEEEECS
T ss_pred             EEEEEHHHccCCCEEEECCEEEEEEEEEEecCCCCCceEEEEEEEECCCCCeEEEEEcCCCEeeeceEEEEEEEEEEecC
Confidence            99999999999999999999999999999999998899999999999999999999999999999999999999999998


Q ss_pred             CceEEEecCCCCeEEeeeCCC
Q 033076           99 DGFVSLLTENGNTKDDLRLPT  119 (128)
Q Consensus        99 d~~~~fMD~etyeq~~i~lp~  119 (128)
                      + .|+|||+|||||++|+.|.
T Consensus        86 ~-~~~fMD~etyeq~~l~~~~  105 (136)
T 1bkb_A           86 D-VIQLMDMRDYKTIEVPMKY  105 (136)
T ss_dssp             S-EEEEEETTTCCEEEEEGGG
T ss_pred             C-EEEEEeCCCCeEEEecccc
Confidence            7 8999999999999999886

>1iz6_A Initiation factor 5A; SH3-like barrel, OB fold, biosynthetic protein; 2.00A {Pyrococcus horikoshii} SCOP: b.34.5.2 b.40.4.5

Probab=100.00  E-value=2.4e-41  Score=248.37  Aligned_cols=102  Identities=28%  Similarity=0.532  Sum_probs=99.5

Q ss_pred             ceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe
Q 033076           17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI   96 (128)
Q Consensus        17 ~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~   96 (128)
                      |.||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|++++++++|+|++++|||||.
T Consensus         2 ~~t~~i~a~~lkkG~~i~~~g~p~~Vve~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qylY~   81 (138)
T 1iz6_A            2 GDKTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPIIDKKTAQVIAI   81 (138)
T ss_dssp             CCEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEECCEEEEEEEEEE
T ss_pred             CceEEEEHHHccCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEECCCCCEEEEEecCCCEEeeceEEEEEEEEEEe
Confidence            67999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEecCCCCeEEeeeCCC
Q 033076           97 SEDGFVSLLTENGNTKDDLRLPT  119 (128)
Q Consensus        97 dgd~~~~fMD~etyeq~~i~lp~  119 (128)
                      ||+ .|+|||++||||++|++|+
T Consensus        82 dg~-~~~fMD~etyeq~~l~~~~  103 (138)
T 1iz6_A           82 TPD-TVQIMDMETYETFEVPIDT  103 (138)
T ss_dssp             CSS-EEEEECTTTCCEEEEEHHH
T ss_pred             CCC-EEEEEeCCCCceEEeeCCH
Confidence            988 8999999999999998885

>2eif_A IF-5A, protein (eukaryotic translation initiation factor; EIF-5A, OB-fold, structural genomics, BSGC STRU funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: b.34.5.2 b.40.4.5 PDB: 1eif_A

Probab=100.00  E-value=2.6e-40  Score=242.33  Aligned_cols=102  Identities=34%  Similarity=0.602  Sum_probs=99.4

Q ss_pred             cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (128)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY   95 (128)
                      +|.||++++++||+|++|+++|+||+|++++|+||||||+|++|+++|||+||+++|.+|+++++++.|.|+++++||||
T Consensus         5 m~~t~~i~~~~lr~G~~I~~~g~p~~V~e~~~~KpGKhG~A~vr~k~knl~tG~~~e~tf~s~~~ve~~~ve~~~~qyly   84 (136)
T 2eif_A            5 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPIIDRRKGQVLA   84 (136)
T ss_dssp             CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEECEEEEEEEEEE
T ss_pred             EEeeEEEEHHHCcCCCEEEECCEEEEEEEEEeecCCCCCceEEEEEEEEcCCCCeEEEEecCCCEeccccEeeeEEEEEE
Confidence            45699999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ecCCceEEEecCCCCeEEeeeCC
Q 033076           96 ISEDGFVSLLTENGNTKDDLRLP  118 (128)
Q Consensus        96 ~dgd~~~~fMD~etyeq~~i~lp  118 (128)
                      .||+ .|+|||+|||||++|+.|
T Consensus        85 ~dg~-~~~fMD~etyeq~~l~~~  106 (136)
T 2eif_A           85 IMGD-MVQIMDLQTYETLELPIP  106 (136)
T ss_dssp             EETT-EEEEEETTTCCEEEEECC
T ss_pred             ecCC-EEEEEeCCCceEEEecCC
Confidence            9988 899999999999999998

>3a5z_B EF-P, elongation factor P; aminoacyl-tRNA synthetase paralog, translation, tRNA, lysyl- synthetase, structural genomics, NPPSFA; HET: KAA; 2.50A {Escherichia coli}

Probab=100.00  E-value=2.3e-37  Score=237.93  Aligned_cols=99  Identities=16%  Similarity=0.209  Sum_probs=92.0

Q ss_pred             ceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEe
Q 033076           17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDI   96 (128)
Q Consensus        17 ~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~   96 (128)
                      |+-+++++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|.+|+++++++.|+|++++|||||.
T Consensus         2 ~~m~~~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~   80 (191)
T 3a5z_B            2 SHMATYYSNDFRAGLKIMLDGEPYAVEASEFVKPGK-GQAFARVKLRRLLTGTRVEKTFKSTDSAEGADVVDMNLTYLYN   80 (191)
T ss_dssp             ----CEESTTCCTTCEEEETTEEEEEEEEEEECCTT-CCCEEEEEEEEGGGTEEEEEEEETTCEEEECCEEEECCEEEEE
T ss_pred             CccceeeHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CcEEEEEEEEECCCCCEEEEEECCCCEEEeeEEEEEEEEEEEe
Confidence            344779999999999999999999999999999999 8999999999999999999999999999999999999999999


Q ss_pred             cCCceEEEecCCCCeEEeeeC
Q 033076           97 SEDGFVSLLTENGNTKDDLRL  117 (128)
Q Consensus        97 dgd~~~~fMD~etyeq~~i~l  117 (128)
                      ||| .|+|||+|||||+.|+.
T Consensus        81 dgd-~~~FMD~etyeQ~~l~~  100 (191)
T 3a5z_B           81 DGE-FWHFMNNETFEQLSADA  100 (191)
T ss_dssp             CSS-CEEEECTTTCCEEEECH
T ss_pred             CCC-EEEEeeCCCCeEEEccH
Confidence            998 69999999999977664

>1ueb_A EF-P, TT0860, elongation factor P; beta barrel, riken structural genomics/proteomics initiative, RSGI, structural genomics; 1.65A {Thermus thermophilus} SCOP: b.34.5.2 b.40.4.5 b.40.4.5 PDB: 3huw_V 3huy_V

Probab=100.00  E-value=6e-37  Score=234.35  Aligned_cols=95  Identities=15%  Similarity=0.120  Sum_probs=91.9

Q ss_pred             EecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCce
Q 033076           22 QQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDGF  101 (128)
Q Consensus        22 i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~~  101 (128)
                      +++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|.+|+++++++.|+|++++|||||.||| .
T Consensus         2 i~a~dlkkG~~i~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~TG~~~e~tf~s~~kve~~~ver~~~qylY~dgd-~   79 (184)
T 1ueb_A            2 ISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDIYVETRELQYLYPEGE-E   79 (184)
T ss_dssp             EEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEECCEEEEEEEEEEEETT-E
T ss_pred             cchhhcCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEECCCCEEEeeeEEEEEEEEEEeCCC-E
Confidence            7899999999999999999999999999999 8999999999999999999999999999999999999999999998 7


Q ss_pred             EEEecCCCCeEEeeeCC
Q 033076          102 VSLLTENGNTKDDLRLP  118 (128)
Q Consensus       102 ~~fMD~etyeq~~i~lp  118 (128)
                      |+|||+|||||+.|+.+
T Consensus        80 ~~FMD~etyeq~~l~~~   96 (184)
T 1ueb_A           80 MVFMDLETYEQFAVPRS   96 (184)
T ss_dssp             EEEEETTTCCEEEEEGG
T ss_pred             EEEeeCCCceeEEcCHH
Confidence            99999999999877754

>1yby_A Translation elongation factor P; conserved hypothetical protein, structural genomics, PSI, protein structure initiative; 1.95A {Clostridium thermocellum}

Probab=100.00  E-value=3.4e-36  Score=235.06  Aligned_cols=101  Identities=19%  Similarity=0.230  Sum_probs=90.8

Q ss_pred             cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEE
Q 033076           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLID   95 (128)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY   95 (128)
                      .+...++++++||+|++|+++|+||+|++++|+|||| |+|++|+|+|||+||+++|++|+++++++.|+|++++|||||
T Consensus        26 ~~rg~Mi~a~dlKkG~~I~idG~p~~Vve~~hvKPGK-G~A~vr~klknl~TG~~~e~tf~s~ekve~a~verr~~QylY  104 (215)
T 1yby_A           26 KKAGLMISAGDFKNGVTFELDGQIFQVIEFQHVKPGK-GAAFVRTKLKNIVTGATIEKTFNPTDKMPKAHIERKDMQYLY  104 (215)
T ss_dssp             -----CEEGGGCCTTCEEEETTEEEEEEEEEEECCC---CCEEEEEEEETTTCCEEEEEECTTCEECBCCCEEEEEEEEE
T ss_pred             hhCCEEEEhhhccCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEECCCCCEEEEEECCCCEEecceEEEEEEEEEE
Confidence            3444568999999999999999999999999999999 899999999999999999999999999999999999999999


Q ss_pred             ecCCceEEEecCCCCeEEeeeCC
Q 033076           96 ISEDGFVSLLTENGNTKDDLRLP  118 (128)
Q Consensus        96 ~dgd~~~~fMD~etyeq~~i~lp  118 (128)
                      .||| .|+|||+|||||+.|+.+
T Consensus       105 ~Dgd-~y~FMD~ETyEQi~l~~~  126 (215)
T 1yby_A          105 NDGD-LYYFMDTETFEQLPLGKD  126 (215)
T ss_dssp             EETT-EEEEECTTTCCEEEEEHH
T ss_pred             eCCC-EEEEccCCCCeeEEecHH
Confidence            9998 799999999999887754

>3tre_A EF-P, elongation factor P; protein synthesis, translation; 2.90A {Coxiella burnetii}

Probab=100.00  E-value=5.6e-36  Score=230.19  Aligned_cols=95  Identities=18%  Similarity=0.297  Sum_probs=91.6

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~  100 (128)
                      ++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|++++|||||.||+ 
T Consensus         6 m~~a~dlkkG~~I~~dG~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd-   83 (191)
T 3tre_A            6 THSTNEFRGGLKVMVDGDPCSIIDNEFVKPGK-GQAFNRVKFRNLKTGRVLERTFKSGETLPAADVVEVEMQYLYNDGE-   83 (191)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEECCSS-SCCEEEEEEEETTTCCEEEEEEETTCEECBCCEEEEEEEEEEECSS-
T ss_pred             EEEHHHCCCCCEEEECCEEEEEEEEEEeeCCC-CceEEEEEEEECCCCCEEEEEeCCCCEEEeceEEEEEEEEEEEcCC-
Confidence            58999999999999999999999999999999 8999999999999999999999999999999999999999999998 


Q ss_pred             eEEEecCCCCeEEeeeC
Q 033076          101 FVSLLTENGNTKDDLRL  117 (128)
Q Consensus       101 ~~~fMD~etyeq~~i~l  117 (128)
                      .|+|||+|||||+.|+.
T Consensus        84 ~~~FMD~etyEq~~l~~  100 (191)
T 3tre_A           84 FWHFMTSENYEQHAASK  100 (191)
T ss_dssp             CEEEEESSSCCEEEECH
T ss_pred             cEEEccCCchHheecch
Confidence            79999999999977654

>3oyy_A EF-P, elongation factor P; translation; 1.75A {Pseudomonas aeruginosa}

Probab=100.00  E-value=2.9e-35  Score=226.20  Aligned_cols=95  Identities=12%  Similarity=0.189  Sum_probs=90.9

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeeeEEEEecCCc
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDYQLIDISEDG  100 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~qylY~dgd~  100 (128)
                      ++++++||+|++|+++|+||+|++++|+|||| |+|++|+++|||+||+++|.+|+++++++.|+|+++++||||.||+ 
T Consensus         4 m~~a~dlk~G~~I~~dg~p~~Vve~~~~KpGK-G~A~vr~klknl~tG~~~e~tf~s~ekve~~~ver~~~qylY~dgd-   81 (191)
T 3oyy_A            4 MKTAQEFRAGQVANINGAPWVIQKAEFNKSGR-NAAVVKMKLKNLLTGAGTETVFKADDKLEPIILDRKEVTYSYFADP-   81 (191)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEECCTT-SCCEEEEEEEETTTCCEEEEEEETTCEEEECCCEEEEEEEEEECSS-
T ss_pred             cccHHhCCCCCEEEECCEEEEEEEEEeeeCCC-CcEEEEEEEEECCCCCEEEEEeCCCCEEEeeeEEEEEEEEEEecCC-
Confidence            58999999999999999999999999999999 6899999999999999999999999999999999999999999998 


Q ss_pred             eEEEecCCCCeEEeeeCC
Q 033076          101 FVSLLTENGNTKDDLRLP  118 (128)
Q Consensus       101 ~~~fMD~etyeq~~i~lp  118 (128)
                      .|+||| |||||+.|+.+
T Consensus        82 ~~~FMD-etyEq~~l~~~   98 (191)
T 3oyy_A           82 LYVFMD-SEFNQYEIEKD   98 (191)
T ss_dssp             SEEEEE-TTCCEEEECGG
T ss_pred             EEEEEe-cChhheeCChH
Confidence            799999 99999777653

>1khi_A HEX1; membrane sealing, peroxisomal target, structural protein; 1.78A {Neurospora crassa} SCOP: b.34.5.2 b.40.4.5

Probab=99.96  E-value=4.1e-29  Score=189.51  Aligned_cols=109  Identities=28%  Similarity=0.561  Sum_probs=100.0

Q ss_pred             ccCCCcceeEEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEeeCCC--------Cee
Q 033076           11 KADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSS--------HNC   81 (128)
Q Consensus        11 ~~~a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~-kpGK~G~A~v~~k~knl~TG~~~e~t~~s~--------d~v   81 (128)
                      .++|++|.|++++++.||+|.+|+|+|+||+|++++++ |||||     ++.+.+||||+++|...+++        +++
T Consensus        24 ~~~~gas~T~p~q~~~LrkG~yv~IkGrPCKIveiStS~KtGKH-----~ivaiDIFTgkK~edi~Pss~p~p~~~~hnm   98 (176)
T 1khi_A           24 TGTGSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTM   98 (176)
T ss_dssp             ---CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEE
T ss_pred             CCCCCCCccEEEEhhheeeCCEEEECCeeeEEEEEEccCCCCce-----EEEEEEccCCcEeEEeccccCCCccccccee
Confidence            58999999999999999999999999999999999999 89998     89999999999999999998        899


Q ss_pred             ecceEEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           82 DVPHVTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        82 e~~~ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      ++|+|+  +||+|.+++ |++++||+++|+.++|+||+..+|+++|
T Consensus        99 ~VPvVk--~yQlldI~d-g~lsLMd~~G~~k~dl~lp~~~~l~~~i  141 (176)
T 1khi_A           99 LGPVFK--QYRVLDMQD-GSIVAMTETGDVKQNLPVIDQSSLWNRL  141 (176)
T ss_dssp             EEECCE--EEEEEEEET-TEEEEECTTCCEEEEEEBCCSTTHHHHH
T ss_pred             ccceeE--EEEEEEEcC-CeEEEEeCCCCEEeeeEccchHHHHHHH
Confidence            999996  999999975 4999999999999999999855677665

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1x6oa1	68	b.34.5.2 (A:19-86) Eukaryotic initiation translati	3e-36
d1khia1	76	b.34.5.2 (A:27-102) Woronin body major protein (He	1e-28
d2eifa1	73	b.34.5.2 (A:1-73) Eukaryotic initiation translatio	8e-25
d1iz6a1	69	b.34.5.2 (A:2-70) Eukaryotic initiation translatio	8e-23
d1bkba1	71	b.34.5.2 (A:4-74) Eukaryotic initiation translatio	9e-23
d1x6oa2	79	b.40.4.5 (A:87-165) C-terminal domain of eukaryoti	2e-16
d1khia2	71	b.40.4.5 (A:103-173) C-terminal domain of eIF5a ho	4e-12
d1ueba1	63	b.34.5.2 (A:1-63) Elongation factor P N-terminal d	0.003

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 68

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score =  116 bits (293), Expect = 3e-36
 Identities = 40/67 (59%), Positives = 50/67 (74%)

Query: 18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPS 77
          KT+P  AG ++K GY+ I GRPCKV+++S SKTGKHGHAK   V  DIF G +LED  PS
Sbjct: 1  KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPS 60

Query: 78 SHNCDVP 84
          +HN +VP
Sbjct: 61 THNVEVP 67

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 76

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

 Score = 97.6 bits (243), Expect = 1e-28
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 6/76 (7%)

Query: 14 AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLE 72
            AS+T       IR    ++++GRPC+V+ +STS  TG+H +     +G+D+F  +  E
Sbjct: 1  GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQHRY-----LGVDLFTKQLHE 55

Query: 73 DIVPSSHNCDVPHVTR 88
          +    S+      V  
Sbjct: 56 ESSFVSNPAPSVVVQT 71

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 73

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 87.9 bits (218), Expect = 8e-25
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
          T     G+++   Y++I G PC++V++S SK GKHG AK   VGI IF   K E + P+S
Sbjct: 7  TKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTS 66

Query: 79 HNCDVP 84
             +VP
Sbjct: 67 SKVEVP 72

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 69

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

 Score = 82.5 bits (204), Expect = 8e-23
 Identities = 23/62 (37%), Positives = 34/62 (54%)

Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
          Q   ++   YI+I   PC++V ++ S  GKHG AK     + IF+GK    + P+S   D
Sbjct: 7  QVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVD 66

Query: 83 VP 84
          VP
Sbjct: 67 VP 68

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 71

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 82.6 bits (204), Expect = 9e-23
 Identities = 28/66 (42%), Positives = 40/66 (60%)

Query: 19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSS 78
          T   +AG +++  Y+VI G PC+VVE+  SKTGKHG AK   V + +F+G K    +P  
Sbjct: 6  TKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVD 65

Query: 79 HNCDVP 84
             +VP
Sbjct: 66 AQVEVP 71

>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]} Length = 79

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

 Score = 66.3 bits (162), Expect = 2e-16
 Identities = 13/48 (27%), Positives = 25/48 (52%), Gaps = 6/48 (12%)

Query: 86  VTRTDYQLIDISED------GFVSLLTENGNTKDDLRLPTDENLLSQV 127
           V    Y ++DI  +        +SL+ + G +++DL +P D  L +Q+
Sbjct: 1   VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQI 48

>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eIF5a homologue (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

 Score = 55.0 bits (133), Expect = 4e-12
 Identities = 10/38 (26%), Positives = 24/38 (63%), Gaps = 1/38 (2%)

Query: 90  DYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV 127
            Y+++D+ +DG +  +TE G+ K +L +    +L +++
Sbjct: 3   QYRVLDM-QDGSIVAMTETGDVKQNLPVIDQSSLWNRL 39

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]} Length = 63

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

 Score = 31.9 bits (73), Expect = 0.003
 Identities = 12/60 (20%), Positives = 21/60 (35%), Gaps = 1/60 (1%)

Query: 23 QAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCD 82
              +R    + + G   + VE    K G+ G AK      ++  G  +E    S    +
Sbjct: 3  SVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLE 61

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d2eifa1	73	Eukaryotic initiation translation factor 5a (eIF5a	99.94
d1bkba1	71	Eukaryotic initiation translation factor 5a (eIF5a	99.93
d1iz6a1	69	Eukaryotic initiation translation factor 5a (eIF5a	99.93
d1x6oa1	68	Eukaryotic initiation translation factor 5a (eIF5a	99.91
d1ueba1	63	Elongation factor P N-terminal domain {Thermus the	99.9
d1khia1	76	Woronin body major protein (Hex1) {Filamentous fun	99.8
d1ueba2	63	Elongation factor P middle and C-terminal domains	99.16
d1bkba2	65	C-terminal domain of eukaryotic initiation transla	98.36
d1iz6a2	67	C-terminal domain of eukaryotic initiation transla	98.34
d2eifa2	59	C-terminal domain of eukaryotic initiation transla	98.19
d1khia2	71	C-terminal domain of eIF5a homologue (Hex1) {Filam	97.68
d1x6oa2	79	C-terminal domain of eukaryotic initiation transla	97.55

>d2eifa1 b.34.5.2 (A:1-73) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.94  E-value=9.4e-27  Score=152.90  Aligned_cols=70  Identities=40%  Similarity=0.704  Sum_probs=67.4

Q ss_pred             cceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecce
Q 033076           16 ASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (128)
Q Consensus        16 ~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~   85 (128)
                      .+.|.++++++||+|++|+++|+||+|++++|++|||||+|++|++++||+||+++|.+|+++|+||+|.
T Consensus         4 m~~~~~i~~~~lKkG~~i~~~g~p~~V~e~~~~kpGk~G~A~~r~k~kni~tG~~~e~~~~s~d~vevPi   73 (73)
T d2eifa1           4 MPGTKQVNVGSLKVGQYVMIDGVPCEIVDISVSKPGKHGGAKARVVGIGIFEKVKKEFVAPTSSKVEVPI   73 (73)
T ss_dssp             CSSEEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCSSSCCEEEEEEEESSSCCEEEEEEETTSEEEEEC
T ss_pred             eccceEEEHHHccCCCEEEECCEEEEEEEEEEECCCCcccEEEEEEEEEEecCcEEEEEEcCCCEEeccC
Confidence            4568999999999999999999999999999999999999999999999999999999999999999984

>d1bkba1 b.34.5.2 (A:4-74) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.93  E-value=1.9e-26  Score=150.74  Aligned_cols=68  Identities=41%  Similarity=0.751  Sum_probs=65.6

Q ss_pred             ceeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecc
Q 033076           17 SKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP   84 (128)
Q Consensus        17 ~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~   84 (128)
                      ..|.+|++++||+|++|+++|+||+|++++|++|||||+|++|+++|||+||+++|.+|+++|+||+|
T Consensus         4 m~~~~i~a~~lKkG~~i~~~g~p~~V~~~~~~kpgk~G~a~~r~k~k~i~tG~~~e~~~~s~d~vevP   71 (71)
T d1bkba1           4 MSTKYVEAGELKEGSYVVIDGEPCRVVEIEKSKTGKHGSAKARIVAVGVFDGGKRTLSLPVDAQVEVP   71 (71)
T ss_dssp             CCCEEEEGGGCCTTCEEEETTEEEEEEEEEEECCSTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEC
T ss_pred             ceeeEEEHHHccCCCEEEECCEEEEEEEEEEECCCCCCccEEEEEEEEeecCcEEEEEEcCCCEEeCC
Confidence            45778999999999999999999999999999999999999999999999999999999999999987

>d1iz6a1 b.34.5.2 (A:2-70) Eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.93  E-value=6.2e-26  Score=147.42  Aligned_cols=67  Identities=34%  Similarity=0.662  Sum_probs=64.6

Q ss_pred             eEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecce
Q 033076           19 TFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (128)
Q Consensus        19 t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~   85 (128)
                      .-+|++++||+|++|+++|+||+|++++|+||||||+|++++++|||+||+++|.+|+++|+||+|.
T Consensus         3 ~~~i~~~~lkkG~~i~~~g~p~~V~e~~~~kpGk~G~a~~~~k~k~i~tG~~~e~~~~s~d~vevP~   69 (69)
T d1iz6a1           3 KTKVQVSKLKPGRYIIIDDEPCRIVNITVSSPGKHGSAKARIEAVGIFDGKVRSIVKPTSAEVDVPI   69 (69)
T ss_dssp             EEEEEGGGCCTTSEEEETTEEEEEEEEEECCCCTTSCCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             cEEEEHhHccCCCEEEECCEEEEEEEEEEEcCCCcCccEEEEEEEEcccCCEEEEEEcCCCEEeccC
Confidence            4579999999999999999999999999999999999999999999999999999999999999984

>d1x6oa1 b.34.5.2 (A:19-86) Eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=99.91  E-value=1.6e-24  Score=140.44  Aligned_cols=68  Identities=59%  Similarity=1.087  Sum_probs=62.4

Q ss_pred             eeEEEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecce
Q 033076           18 KTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPH   85 (128)
Q Consensus        18 ~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~   85 (128)
                      +||++++++||+|.||+++|+||+|++++++||||||+|++|+.+.+||||++++...++++++++|.
T Consensus         1 ~T~p~~~~~lkkG~yv~i~g~PCkI~~istSk~GKHGhaK~~i~~idIFtgkK~~~v~P~~~~v~vP~   68 (68)
T d1x6oa1           1 KTYPLAAGALKKGGYVCINGRPCKVIDLSVSKTGKHGHAKVSIVATDIFTGNRLEDQAPSTHNVEVPF   68 (68)
T ss_dssp             CEEEEEGGGCCTTCEEEETTEEEEEEEEEECCC----CCEEEEEEEETTTCCEEEEEEETTSEEEEEC
T ss_pred             CceeeEcceeeECCEEEECCEeeEEEEEeecCCCcccccEEEEEEEEcccCCEEEEEccCCceeecCC
Confidence            49999999999999999999999999999999999999999999999999999999999999999984

>d1ueba1 b.34.5.2 (A:1-63) Elongation factor P N-terminal domain {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Elongation factor P N-terminal domain
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.90  E-value=3.8e-24  Score=136.67  Aligned_cols=63  Identities=19%  Similarity=0.175  Sum_probs=60.5

Q ss_pred             EEecccccCceEEEECCeeEEEEEeeEecCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecc
Q 033076           21 PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVP   84 (128)
Q Consensus        21 ~i~~~~ikkG~~i~~~g~p~~Vve~~~~kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~   84 (128)
                      ++++++||+|++|+++|+||.|++++|++||| |+|++++|+|||.||+++|.+|+++|+||.+
T Consensus         1 Mi~a~elkkG~~i~~~g~~~~V~~~~~~kpgk-g~a~v~~Klknl~tG~~~e~tf~~~dkve~V   63 (63)
T d1ueba1           1 MISVTDLRPGTKVKMDGGLWECVEYQHQKLGR-GGAKVVAKFKNLETGATVERTFNSGEKLEDI   63 (63)
T ss_dssp             CEEGGGCCTTCEEEETTEEEEEEEEEEEEETT-SCCEEEEEEEESSSSCEEEEEEETTCEEEEC
T ss_pred             CCcHHHCCCCCEEEECCEEEEEEEEEEEcCCC-CceEEEEEEEEcCCCCEEEEEECCCCEeeeC
Confidence            47899999999999999999999999999999 8999999999999999999999999999864

>d1khia1 b.34.5.2 (A:27-102) Woronin body major protein (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: SH3-like barrel
superfamily: Translation proteins SH3-like domain
family: eIF5a N-terminal domain-like
domain: Woronin body major protein (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=99.80  E-value=1.4e-19  Score=118.50  Aligned_cols=73  Identities=30%  Similarity=0.491  Sum_probs=68.7

Q ss_pred             CCcceeEEEecccccCceEEEECCeeEEEEEeeEe-cCCCCcccEEEEEEEEccCCcEEEEeeCCCCeeecceEEEeee
Q 033076           14 AGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTS-KTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDVPHVTRTDY   91 (128)
Q Consensus        14 a~~~~t~~i~~~~ikkG~~i~~~g~p~~Vve~~~~-kpGK~G~A~v~~k~knl~TG~~~e~t~~s~d~ve~~~ve~~~~   91 (128)
                      |++|.||++++++||+|.+++|+|+||+|++++++ |||||     ++.+.|||||+++|...+.+.....+.|++.--
T Consensus         1 a~as~T~p~~~~~lkkg~yv~i~g~PCkIv~istS~ktGKH-----~~vgidIFtgkk~ed~~~vs~~~p~~vvq~~~g   74 (76)
T d1khia1           1 GSASQTVTIPCHHIRLGDILILQGRPCQVIRISTSAATGQH-----RYLGVDLFTKQLHEESSFVSNPAPSVVVQTMLG   74 (76)
T ss_dssp             CCSCCEEEEEGGGCCTTCEEEETTEEEEEEEEEECTTTCCE-----EEEEEETTTCCEEEEECCEECSSTTCCEEEEEE
T ss_pred             CCCCcceeEEccceeeCCEEEECCcccEEEEEeeccCCCce-----eEEEEeeccCcEeeecccccCCCCceeeeeeec
Confidence            68999999999999999999999999999999998 99998     789999999999999999999999999887643

>d1ueba2 b.40.4.5 (A:64-126) Elongation factor P middle and C-terminal domains {Thermus thermophilus HB8 [TaxId: 300852]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Elongation factor P middle and C-terminal domains
species: Thermus thermophilus HB8 [TaxId: 300852]

Probab=99.16  E-value=1.5e-11  Score=77.49  Aligned_cols=32  Identities=6%  Similarity=-0.018  Sum_probs=28.9

Q ss_pred             eEEEeeeEEEEecCCceEEEecCCCCeEEeeeC
Q 033076           85 HVTRTDYQLIDISEDGFVSLLTENGNTKDDLRL  117 (128)
Q Consensus        85 ~ve~~~~qylY~dgd~~~~fMD~etyeq~~i~l  117 (128)
                      +|++|++||||.||+ .|+|||++||||+.|+-
T Consensus         1 ~ve~~~~qyLY~dgd-~~~FMd~etyEQi~v~~   32 (63)
T d1ueba2           1 YVETRELQYLYPEGE-EMVFMDLETYEQFAVPR   32 (63)
T ss_dssp             CEEEEEEEEEEEETT-EEEEEETTTCCEEEEEG
T ss_pred             CccceeEEEEEeCCC-eEEEEeCCCccEEEcCH
Confidence            489999999999998 79999999999977763

>d1bkba2 b.40.4.5 (A:75-139) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.36  E-value=2e-07  Score=58.61  Aligned_cols=42  Identities=12%  Similarity=0.298  Sum_probs=37.3

Q ss_pred             EEEeeeEEEEecCCceEEEecCCCCeEEeeeCC-CCcchhcccC
Q 033076           86 VTRTDYQLIDISEDGFVSLLTENGNTKDDLRLP-TDENLLSQVS  128 (128)
Q Consensus        86 ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp-~~~~l~~k~~  128 (128)
                      ++|+..|.|.+.|| ..++||.|||+.++|++| ..+++.+||+
T Consensus         2 IeK~~aQVlsi~Gd-~vq~MD~etyetfelpm~~~~ee~~~~l~   44 (65)
T d1bkba2           2 IEKFTAQILSVSGD-VIQLMDMRDYKTIEVPMKYVEEEAKGRLA   44 (65)
T ss_dssp             CEEEEEEEEEECSS-EEEEEETTTCCEEEEEGGGBCHHHHTTCC
T ss_pred             ccccceeEEEEcCC-eEEEeecCcceeEEecCCCCChHHHhccC
Confidence            68999999999998 799999999999999985 4578888874

>d1iz6a2 b.40.4.5 (A:71-137) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=98.34  E-value=1.7e-07  Score=59.21  Aligned_cols=42  Identities=17%  Similarity=0.301  Sum_probs=37.0

Q ss_pred             EEEeeeEEEEecCCceEEEecCCCCeEEeeeCCC--CcchhcccC
Q 033076           86 VTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPT--DENLLSQVS  128 (128)
Q Consensus        86 ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~--~~~l~~k~~  128 (128)
                      |+|+..|.|.+.|| ..++||.+||+.+++++|.  .++|.++|+
T Consensus         1 IeKk~aQVlsi~Gd-~vQ~MD~etyeTfelpi~~~v~ee~~~~l~   44 (67)
T d1iz6a2           1 IDKKTAQVIAITPD-TVQIMDMETYETFEVPIDTGVADEIRDQLK   44 (67)
T ss_dssp             CEEEEEEEEEECSS-EEEEECTTTCCEEEEEHHHHBCGGGTTTCC
T ss_pred             CccceeEEEEEcCC-eEEEeecCCceeEEEecCCCccHHHHhccC
Confidence            58999999999998 7999999999999999875  377888874

>d2eifa2 b.40.4.5 (A:74-132) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=98.19  E-value=1.5e-06  Score=53.59  Aligned_cols=34  Identities=21%  Similarity=0.354  Sum_probs=31.8

Q ss_pred             EEEeeeEEEEecCCceEEEecCCCCeEEeeeCCCC
Q 033076           86 VTRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTD  120 (128)
Q Consensus        86 ve~~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~  120 (128)
                      ++|+..|.|.+.|| ..++||.|||+.+++++|++
T Consensus         1 IeKk~aQVlsi~G~-~vq~MD~etyetf~l~ipe~   34 (59)
T d2eifa2           1 IDRRKGQVLAIMGD-MVQIMDLQTYETLELPIPEG   34 (59)
T ss_dssp             EEEEEEEEEEEETT-EEEEEETTTCCEEEEECCSC
T ss_pred             CccceeEEEEEcCC-eEEEeeCCcceeEEEeCcch
Confidence            68999999999998 79999999999999999965

>d1khia2 b.40.4.5 (A:103-173) C-terminal domain of eIF5a homologue (Hex1) {Filamentous fungi (Neurospora crassa) [TaxId: 5141]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eIF5a homologue (Hex1)
species: Filamentous fungi (Neurospora crassa) [TaxId: 5141]

Probab=97.68  E-value=2.6e-05  Score=49.42  Aligned_cols=38  Identities=26%  Similarity=0.597  Sum_probs=33.4

Q ss_pred             eeeEEEEecCCceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           89 TDYQLIDISEDGFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        89 ~~~qylY~dgd~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      ++||++.++ ||++++|++.+..+.++++|..++|+++|
T Consensus         2 keYqlidId-DG~lsLM~e~G~~keDlkv~~~~el~~~I   39 (71)
T d1khia2           2 KQYRVLDMQ-DGSIVAMTETGDVKQNLPVIDQSSLWNRL   39 (71)
T ss_dssp             EEEEEEEEE-TTEEEEECTTCCEEEEEEBCCSTTHHHHH
T ss_pred             ceEEEEEee-CCeEEEEcCCCCccccccCCChhHHHHHH
Confidence            799999996 57999999999999999986666798876

>d1x6oa2 b.40.4.5 (A:87-165) C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a) {Leishmania infantum [TaxId: 5671]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: C-terminal domain of eukaryotic initiation translation factor 5a (eIF5a)
species: Leishmania infantum [TaxId: 5671]

Probab=97.55  E-value=3.4e-05  Score=49.83  Aligned_cols=42  Identities=31%  Similarity=0.692  Sum_probs=36.0

Q ss_pred             EEEeeeEEEEecCC------ceEEEecCCCCeEEeeeCCCCcchhccc
Q 033076           86 VTRTDYQLIDISED------GFVSLLTENGNTKDDLRLPTDENLLSQV  127 (128)
Q Consensus        86 ve~~~~qylY~dgd------~~~~fMD~etyeq~~i~lp~~~~l~~k~  127 (128)
                      |.|.+||.+.+++|      |++.+|+.++-.+.+|+||.+.+|..+|
T Consensus         1 Vkr~eYqlidI~~d~d~s~dGflsLm~d~G~treDlkLP~d~elg~~I   48 (79)
T d1x6oa2           1 VKTYTYSVLDIQANEDPSLPAHLSLMDDEGESREDLDMPPDPALATQI   48 (79)
T ss_dssp             CEEEEEEEEEEECCSSTTSCCEEEEECTTSCEECCCBCCSCHHHHHHH
T ss_pred             CccceeEEEeeccCCccCCCcEEEEEcCCCCcccccCCCCchHHHHHH
Confidence            46889999999764      7999999999999999998666787665