Citrus Sinensis ID: 033078

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MASFLAQAAEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSSGASKQGGS
Secondary Structure (PSIPRED)
ccccHHHHHHHHcHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccEEccccccccEEEEEccEEEEEccccccEEccEEEEEEEcccccccEEccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHcccccHcHHHHHHHHHHHHHcccccEEEEEEcccccccEEcEEEccccccccEEEEcccEEEEEcccHHHHEccEEEEEEEcccccEEEEEcccccccccccccEEEcccccccccccc
Coil and Loop (DISEMBL)
MASFLAQAAEKIGPAVRRQAVTVRHLLQQRQRPYLklgvkargcnglsyTLNYADERAKFDELVEDKgvkilidpkALMHVIGTKMDFVDDKLRSEFvfinpnskgqcgcgesfmttsssgaskqggs
Flexible Loop (DISEMBL)
MASFLAQAaekigpavrrqAVTVRHllqqrqrpylklgvkargcNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINpnskgqcgcgesfmttsssgaskqggs
Low Complexity Region (SEG)
MASFLAQAAEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSSGASKQGGS
Disordered region (IsUnstruct)
**************AVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGC******************
Disordered Region (DISOPRED)
**************AVRRQAVTV*******QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM*************
Disordered Region (DISEMBL)
********AEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF**************
Disordered Region (DISPRO)
**********KIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASFLAQAAEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSSGASKQGGS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	128	2.2.26 [Sep-21-2011]
Q8LBM4	137	Iron-sulfur assembly prot	yes	no	0.984	0.919	0.740	3e-53
Q8L8C0	109	Iron-sulfur assembly prot	no	no	0.757	0.889	0.724	8e-40
Q07821	250	Iron-sulfur assembly prot	yes	no	0.726	0.372	0.580	1e-27
Q9ZD62	110	Uncharacterized protein R	yes	no	0.718	0.836	0.489	1e-25
Q54VS1	139	Iron-sulfur cluster assem	yes	no	0.640	0.589	0.554	1e-24
Q5ZJ74	129	Iron-sulfur cluster assem	yes	no	0.718	0.713	0.537	1e-23
Q4QRC6	129	Iron-sulfur cluster assem	yes	no	0.718	0.713	0.537	3e-23
Q4R5F0	129	Iron-sulfur cluster assem	N/A	no	0.718	0.713	0.526	4e-23
Q9BUE6	129	Iron-sulfur cluster assem	yes	no	0.718	0.713	0.526	4e-23
Q3SZG8	129	Iron-sulfur cluster assem	yes	no	0.718	0.713	0.526	4e-23

>sp|Q8LBM4|ISAM1_ARATH Iron-sulfur assembly protein IscA-like 1, mitochondrial OS=Arabidopsis thaliana GN=At2g16710 PE=2 SV=2

 Score =  206 bits (525), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 100/135 (74%), Positives = 116/135 (85%), Gaps = 9/135 (6%)

Query: 2   ASFLAQAAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNY 53
           +  LA AA ++GPA+R+Q +T        V HLLQQRQ+P+L+LGVKARGCNGLSYTLNY
Sbjct: 4   SQILAAAAARVGPALRKQVLTLTDEAASRVHHLLQQRQKPFLRLGVKARGCNGLSYTLNY 63

Query: 54  ADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGES 113
           ADE+ KFDELVE+KGV+IL++PKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGES
Sbjct: 64  ADEKGKFDELVEEKGVRILVEPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGES 123

Query: 114 FMTTSSSGASKQGGS 128
           FMTTS+S A KQ  S
Sbjct: 124 FMTTSTSSA-KQSAS 137

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L8C0|ISAM3_ARATH Iron-sulfur assembly protein IscA-like 3, mitochondrial OS=Arabidopsis thaliana GN=At2g36260 PE=3 SV=2

 Score =  162 bits (409), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 71/98 (72%), Positives = 87/98 (88%), Gaps = 1/98 (1%)

Query: 20  AVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALM 79
           A  +R LLQ +Q+P+L+L V+A+GCNGLSY LNYA E+ KFDE+VE+KGVKIL+DPKA+M
Sbjct: 13  AARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGVKILVDPKAVM 72

Query: 80  HVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 117
           HVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct: 73  HVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Arabidopsis thaliana (taxid: 3702)

>sp|Q07821|ISA1_YEAST Iron-sulfur assembly protein 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISA1 PE=1 SV=1

 Score =  121 bits (304), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 70/93 (75%)

Query: 23  VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVI 82
           +R LL Q +   +++  + RGC+GL+Y L Y  E  KFDE+VE  GVKI+ID KAL  +I
Sbjct: 157 LRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDGVKIVIDSKALFSII 216

Query: 83  GTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
           G++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct: 217 GSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249

Involved in the assembly of mitochondrial and cytoplasmic iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|Q9ZD62|Y484_RICPR Uncharacterized protein RP484 OS=Rickettsia prowazekii (strain Madrid E) GN=RP484 PE=3 SV=1

 Score =  114 bits (286), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 46/94 (48%), Positives = 73/94 (77%), Gaps = 2/94 (2%)

Query: 23  VRHLLQQRQRPY--LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           V+ L+++R +P   +++G+K+ GC G +Y + YAD + +FDE+VE+KGV+ILIDPK LM+
Sbjct: 15  VKLLIEKRAKPTFGIRVGIKSGGCAGQTYYVEYADNKNQFDEVVEEKGVRILIDPKTLMY 74

Query: 81  VIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           ++G++MD+V+   +S+F F NPN K  CGCG+SF
Sbjct: 75  ILGSEMDYVETNFKSQFTFTNPNEKANCGCGKSF 108

Rickettsia prowazekii (strain Madrid E) (taxid: 272947)

>sp|Q54VS1|ISCA1_DICDI Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Dictyostelium discoideum GN=isca1 PE=3 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 46/83 (55%), Positives = 68/83 (81%), Gaps = 1/83 (1%)

Query: 35  LKLGVKARGCNGLSYTLNYADERAKFDE-LVEDKGVKILIDPKALMHVIGTKMDFVDDKL 93
           L+LG+K RGC+G+SYTL++A ++ KFDE +V DK + I++D KAL+ VIGT+MD++++ +
Sbjct: 43  LRLGIKERGCSGMSYTLDFATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPI 102

Query: 94  RSEFVFINPNSKGQCGCGESFMT 116
           + EF+FINPN+   CGCGESF T
Sbjct: 103 KKEFIFINPNATNTCGCGESFTT 125

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Dictyostelium discoideum (taxid: 44689)

>sp|Q5ZJ74|ISCA1_CHICK Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Gallus gallus GN=ISCA1 PE=2 SV=1

 Score =  108 bits (270), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 23  VRHLLQ-QRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           ++ LL+ Q +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct: 35  IKQLLKDQPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTL 94

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 95  LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Gallus gallus (taxid: 9031)

>sp|Q4QRC6|ISCA1_DANRE Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Danio rerio GN=isca1 PE=2 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 50/93 (53%), Positives = 66/93 (70%), Gaps = 1/93 (1%)

Query: 23  VRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           V+ LL  +     LK+GV+ RGCNGL+YTL+Y   + + DE V   GV++ I+ KA + +
Sbjct: 35  VKQLLDNKPEYIGLKVGVRTRGCNGLTYTLDYTKNKEQSDEEVLQDGVRVFIEKKAQLTL 94

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +GT+MDFV+ KL SEFVF NPN KG CGCGESF
Sbjct: 95  LGTEMDFVETKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Danio rerio (taxid: 7955)

>sp|Q4R5F0|ISCA1_MACFA Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Macaca fascicularis GN=ISCA1 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 23  VRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           ++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct: 35  IKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTL 94

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 95  LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Macaca fascicularis (taxid: 9541)

>sp|Q9BUE6|ISCA1_HUMAN Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Homo sapiens GN=ISCA1 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 23  VRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           ++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct: 35  IKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTL 94

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 95  LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Homo sapiens (taxid: 9606)

>sp|Q3SZG8|ISCA1_BOVIN Iron-sulfur cluster assembly 1 homolog, mitochondrial OS=Bos taurus GN=ISCA1 PE=2 SV=1

 Score =  106 bits (265), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 67/93 (72%), Gaps = 1/93 (1%)

Query: 23  VRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           ++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct: 35  IKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVIQDGVRVFIEKKAQLTL 94

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct: 95  LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

Involved in the assembly of mitochondrial iron-sulfur proteins. Probably involved in the binding of an intermediate of Fe/S cluster assembly.

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
255575681	138	iron-sulfur cluster assembly protein, pu	1.0	0.927	0.832	3e-59
209484093	167	iron-sulfer cluster scaffold protein ISA	0.992	0.760	0.777	3e-56
388516433	137	unknown [Medicago truncatula]	0.953	0.890	0.807	1e-54
224097616	141	predicted protein [Populus trichocarpa]	0.976	0.886	0.766	1e-54
363808122	134	uncharacterized protein LOC100777750 [Gl	0.937	0.895	0.796	2e-54
356572554	134	PREDICTED: iron-sulfur assembly protein	0.937	0.895	0.796	8e-54
224110166	141	predicted protein [Populus trichocarpa]	0.976	0.886	0.759	3e-53
225440900	133	PREDICTED: iron-sulfur assembly protein	0.960	0.924	0.793	4e-53
255560329	132	iron-sulfur cluster assembly protein, pu	0.945	0.916	0.782	5e-53
449512791	167	PREDICTED: iron-sulfur assembly protein	0.898	0.688	0.788	5e-52

>gi|255575681|ref|XP_002528740.1| iron-sulfur cluster assembly protein, putative [Ricinus communis] gi|223531834|gb|EEF33652.1| iron-sulfur cluster assembly protein, putative [Ricinus communis]

 Score =  232 bits (592), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 114/137 (83%), Positives = 122/137 (89%), Gaps = 9/137 (6%)

Query: 1   MAS-FLAQAAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTL 51
           MAS  LA AAEKIGPA RRQA+T        +RHLLQQRQRP+LKLGVKARGCNGLSYTL
Sbjct: 1   MASKLLAAAAEKIGPAARRQALTLTDAAASRIRHLLQQRQRPFLKLGVKARGCNGLSYTL 60

Query: 52  NYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 111
           NYADE+AKFDELVE+KGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG
Sbjct: 61  NYADEKAKFDELVEEKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCG 120

Query: 112 ESFMTTSSSGASKQGGS 128
           ESFMTTSS+G ++Q  S
Sbjct: 121 ESFMTTSSAGDAEQRSS 137

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|209484093|gb|ACI47521.1| iron-sulfer cluster scaffold protein ISA1, partial [Eucalyptus grandis]

 Score =  223 bits (567), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 105/135 (77%), Positives = 118/135 (87%), Gaps = 8/135 (5%)

Query: 2   ASFLAQAAEKIGPAVRRQAVTV--------RHLLQQRQRPYLKLGVKARGCNGLSYTLNY 53
           AS LA AA++ G A RRQ +TV        RHLLQQRQRP+L+LGVKARGCNGLSYTLNY
Sbjct: 33  ASKLAAAADRFGSAARRQVLTVTDAAASRIRHLLQQRQRPFLRLGVKARGCNGLSYTLNY 92

Query: 54  ADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGES 113
           AD + KFDELVEDKG+KIL++PKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGES
Sbjct: 93  ADSKGKFDELVEDKGIKILVEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGES 152

Query: 114 FMTTSSSGASKQGGS 128
           FMTTS+S A+K+GGS
Sbjct: 153 FMTTSNSDAAKRGGS 167

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388516433|gb|AFK46278.1| unknown [Medicago truncatula]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 113/130 (86%), Gaps = 8/130 (6%)

Query: 5   LAQAAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADE 56
           +A AAEK+  AVRRQAV         +  LLQQRQRP+LKLGVKARGCNGLSYTLNYAD+
Sbjct: 6   MAMAAEKLTTAVRRQAVELTDAAASRIHFLLQQRQRPFLKLGVKARGCNGLSYTLNYADK 65

Query: 57  RAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 116
           + KFDELVEDKGVKILIDPKALMHV+GTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT
Sbjct: 66  KEKFDELVEDKGVKILIDPKALMHVVGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 125

Query: 117 TSSSGASKQG 126
             S+GASKQG
Sbjct: 126 KPSTGASKQG 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224097616|ref|XP_002311012.1| predicted protein [Populus trichocarpa] gi|222850832|gb|EEE88379.1| predicted protein [Populus trichocarpa]

 Score =  217 bits (552), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 102/133 (76%), Positives = 113/133 (84%), Gaps = 8/133 (6%)

Query: 4   FLAQAAEKIGPAVRRQ--------AVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYAD 55
             A AAE +G + R+Q        A  +RHLLQQRQRP+L+LGVKARGCNGLSYTLNYAD
Sbjct: 9   LFAAAAESVGSSARKQVLDLTDTAATRIRHLLQQRQRPFLRLGVKARGCNGLSYTLNYAD 68

Query: 56  ERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
           E+ +FDELV DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNS+GQCGCGESFM
Sbjct: 69  EKGRFDELVADKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSQGQCGCGESFM 128

Query: 116 TTSSSGASKQGGS 128
           TTSSS  +K+GGS
Sbjct: 129 TTSSSETAKRGGS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363808122|ref|NP_001241965.1| uncharacterized protein LOC100777750 [Glycine max] gi|255640925|gb|ACU20744.1| unknown [Glycine max]

 Score =  216 bits (550), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 102/128 (79%), Positives = 113/128 (88%), Gaps = 8/128 (6%)

Query: 5   LAQAAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADE 56
           ++ AAEKI  A RRQAV+        +R LLQQRQRP+LKLGVKARGCNGLSYTLNYA+E
Sbjct: 6   MSVAAEKIATAARRQAVSLTDAAASRIRQLLQQRQRPFLKLGVKARGCNGLSYTLNYANE 65

Query: 57  RAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 116
           + KFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKL+SEF+F+NPNSKGQCGCGESFMT
Sbjct: 66  KGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLKSEFIFVNPNSKGQCGCGESFMT 125

Query: 117 TSSSGASK 124
           T SSG+SK
Sbjct: 126 TGSSGSSK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356572554|ref|XP_003554433.1| PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial-like [Glycine max]

 Score =  214 bits (546), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 102/128 (79%), Positives = 111/128 (86%), Gaps = 8/128 (6%)

Query: 5   LAQAAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADE 56
           ++ AAEKIG A RRQAV+        +R LLQQRQR +LKLGVK RGCNGLSYTLNYADE
Sbjct: 6   MSVAAEKIGTAARRQAVSLTDAAASRIRQLLQQRQRAFLKLGVKTRGCNGLSYTLNYADE 65

Query: 57  RAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 116
           + KFDELVEDKGV ILIDPKALMHVIGTKMDFVDDKLRSEF+F+NPNSKGQCGCGESFMT
Sbjct: 66  KGKFDELVEDKGVMILIDPKALMHVIGTKMDFVDDKLRSEFIFVNPNSKGQCGCGESFMT 125

Query: 117 TSSSGASK 124
           T SSG+SK
Sbjct: 126 TGSSGSSK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224110166|ref|XP_002315435.1| predicted protein [Populus trichocarpa] gi|222864475|gb|EEF01606.1| predicted protein [Populus trichocarpa]

 Score =  213 bits (541), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 101/133 (75%), Positives = 111/133 (83%), Gaps = 8/133 (6%)

Query: 4   FLAQAAEKIGPAVRRQ--------AVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYAD 55
             A AAE +G + R+Q        A  +R LLQQR+RP+L+LGVKARGCNGLSYTLNYAD
Sbjct: 9   LFAAAAEAVGSSARKQVLSLTDAAATRIRDLLQQRKRPFLRLGVKARGCNGLSYTLNYAD 68

Query: 56  ERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
           E+ KFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFM
Sbjct: 69  EKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFM 128

Query: 116 TTSSSGASKQGGS 128
           T SSS  +K GGS
Sbjct: 129 TRSSSTTAKGGGS 141

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440900|ref|XP_002282752.1| PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial [Vitis vinifera] gi|297740107|emb|CBI30289.3| unnamed protein product [Vitis vinifera]

 Score =  212 bits (540), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 104/131 (79%), Positives = 116/131 (88%), Gaps = 8/131 (6%)

Query: 2   ASFLAQAAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNY 53
           +SFLA AA K GP++RRQA+T        +RHLLQQRQR +L+LGVKARGCNGLSYTLNY
Sbjct: 3   SSFLAAAAAKAGPSLRRQALTLTDAAASRIRHLLQQRQRTFLRLGVKARGCNGLSYTLNY 62

Query: 54  ADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGES 113
           AD++ KFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGES
Sbjct: 63  ADDKGKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGES 122

Query: 114 FMTTSSSGASK 124
           FMTT + GA+K
Sbjct: 123 FMTTGNPGAAK 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560329|ref|XP_002521181.1| iron-sulfur cluster assembly protein, putative [Ricinus communis] gi|223539628|gb|EEF41212.1| iron-sulfur cluster assembly protein, putative [Ricinus communis]

 Score =  212 bits (539), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 101/129 (78%), Positives = 113/129 (87%), Gaps = 8/129 (6%)

Query: 8   AAEKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAK 59
           A+  +G A RR+A++        +RHLL QRQRP+L+LGVKARGCNGLSYTLNYADE+ K
Sbjct: 3   ASRVLGQAARREALSLTDAAAARIRHLLVQRQRPFLRLGVKARGCNGLSYTLNYADEKGK 62

Query: 60  FDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSS 119
           FDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTTSS
Sbjct: 63  FDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTSS 122

Query: 120 SGASKQGGS 128
           S A+K+G S
Sbjct: 123 SEAAKRGVS 131

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449512791|ref|XP_004164140.1| PREDICTED: iron-sulfur assembly protein IscA-like 1, mitochondrial-like [Cucumis sativus]

 Score =  208 bits (530), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 97/123 (78%), Positives = 108/123 (87%), Gaps = 8/123 (6%)

Query: 10  EKIGPAVRRQAVT--------VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFD 61
           +K GPA RRQ +T        +R LLQQRQRP+L+LGVKARGCNGLSYTLNYADE+ KFD
Sbjct: 14  QKAGPAARRQILTLTEAAAARIRQLLQQRQRPFLRLGVKARGCNGLSYTLNYADEKGKFD 73

Query: 62  ELVEDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSSG 121
           ELVED+ VKILI+PKALMHVIGTKMDFVDDKLRSEF+FINPNSKGQCGCGESFMTTSS+ 
Sbjct: 74  ELVEDQNVKILIEPKALMHVIGTKMDFVDDKLRSEFIFINPNSKGQCGCGESFMTTSSAE 133

Query: 122 ASK 124
           A+K
Sbjct: 134 ANK 136

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	128
TAIR|locus:2049440	109	AT2G36260 [Arabidopsis thalian	0.757	0.889	0.724	1.3e-36
CGD|CAL0006111	269	ISA1 [Candida albicans (taxid:	0.703	0.334	0.6	9.4e-27
WB|WBGene00012666	131	Y39B6A.3 [Caenorhabditis elega	0.843	0.824	0.527	3.2e-26
SGD|S000003950	250	ISA1 "Protein required for mat	0.726	0.372	0.580	1.4e-25
ASPGD|ASPL0000043500	242	AN10237 [Emericella nidulans (	0.828	0.438	0.522	3.6e-25
FB|FBgn0026666	130	l(1)G0136 "lethal (1) G0136" [	0.820	0.807	0.541	3.6e-25
DICTYBASE|DDB_G0280173	139	isca1 "iron-sulfur cluster ass	0.671	0.618	0.540	5.3e-24
UNIPROTKB|E2RM27	178	ISCA1 "Uncharacterized protein	0.718	0.516	0.537	6.1e-23
UNIPROTKB|Q5ZJ74	129	ISCA1 "Iron-sulfur cluster ass	0.718	0.713	0.537	7.8e-23
UNIPROTKB|F1S4I4	170	ISCA1 "Uncharacterized protein	0.718	0.541	0.526	1.3e-22

TAIR|locus:2049440 AT2G36260 [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 71/98 (72%), Positives = 87/98 (88%)

Query:    20 AVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALM 79
             A  +R LLQ +Q+P+L+L V+A+GCNGLSY LNYA E+ KFDE+VE+KGVKIL+DPKA+M
Sbjct:    13 AARIRQLLQHQQKPFLRLAVEAKGCNGLSYVLNYAQEKGKFDEVVEEKGVKILVDPKAVM 72

Query:    80 HVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTT 117
             HVIGT+MDFVDDKLRSEFVF+NPN+  +CGCGESF TT
Sbjct:    73 HVIGTEMDFVDDKLRSEFVFVNPNAT-KCGCGESFTTT 109

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

CGD|CAL0006111 ISA1 [Candida albicans (taxid:5476)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 54/90 (60%), Positives = 69/90 (76%)

Query:    26 LLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTK 85
             LL Q     +++GV+ RGC+GL+Y L Y D+  KFDELVE  GVK+LID KAL  ++G++
Sbjct:   179 LLDQPDPKLIRIGVRNRGCSGLTYNLEYVDKPGKFDELVEQDGVKVLIDSKALFSIVGSE 238

Query:    86 MDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
             MD++DDKL S F+F NPNSKG CGCGESFM
Sbjct:   239 MDWLDDKLSSRFIFKNPNSKGTCGCGESFM 268

GO:0005506 "iron ion binding" evidence=IEA

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0006879 "cellular iron ion homeostasis" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0009102 "biotin biosynthetic process" evidence=IEA

WB|WBGene00012666 Y39B6A.3 [Caenorhabditis elegans (taxid:6239)]

 Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
 Identities = 58/110 (52%), Positives = 79/110 (71%)

Query:     7 QAAEKIGPAVRRQAVT-VRHLL-QQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELV 64
             Q + +    +  +AV+ +R LL QQ     LK+GV+ +GCNGL+YTL YA ++ KFDE V
Sbjct:    20 QTSFRAALTLTNEAVSRIRVLLAQQNDANALKIGVRQKGCNGLTYTLEYAKDKQKFDEEV 79

Query:    65 EDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             E  G+K+ I+PKA + ++G++MD+V DKL SEFVF NPN KG CGCGESF
Sbjct:    80 EQDGIKVWIEPKAQLSLLGSEMDYVTDKLSSEFVFRNPNIKGTCGCGESF 129

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040007 "growth" evidence=IMP

GO:0002119 "nematode larval development" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

SGD|S000003950 ISA1 "Protein required for maturation of mitochondrial [4Fe-4S] proteins" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
 Identities = 54/93 (58%), Positives = 70/93 (75%)

Query:    23 VRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVI 82
             +R LL Q +   +++  + RGC+GL+Y L Y  E  KFDE+VE  GVKI+ID KAL  +I
Sbjct:   157 LRALLAQPEPKLIRVSARNRGCSGLTYDLQYITEPGKFDEVVEQDGVKIVIDSKALFSII 216

Query:    83 GTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
             G++MD++DDKL S+FVF NPNSKG CGCGESFM
Sbjct:   217 GSEMDWIDDKLASKFVFKNPNSKGTCGCGESFM 249

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;IGI;IMP

GO:0051536 "iron-sulfur cluster binding" evidence=IEA;ISA

GO:0005739 "mitochondrion" evidence=IEA

GO:0005506 "iron ion binding" evidence=IDA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0009102 "biotin biosynthetic process" evidence=IGI;IMP

GO:0005759 "mitochondrial matrix" evidence=IEA;IDA

ASPGD|ASPL0000043500 AN10237 [Emericella nidulans (taxid:162425)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 57/109 (52%), Positives = 76/109 (69%)

Query:     7 QAAEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVED 66
             +AA K+ P    Q   +R LL Q +   +++GVK RGC+GL+Y L Y D+   FDE+VE 
Sbjct:   136 KAAMKLTPIAVEQ---LRKLLSQPEPRLIRVGVKNRGCSGLAYHLEYVDKPGTFDEVVEQ 192

Query:    67 KGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
              GVK+LID KAL  +IG++MD+ +DKL + FVF NPN K +CGCGESFM
Sbjct:   193 DGVKVLIDSKALFSIIGSEMDWQEDKLSARFVFRNPNIKEECGCGESFM 241

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

FB|FBgn0026666 l(1)G0136 "lethal (1) G0136" [Drosophila melanogaster (taxid:7227)]

 Score = 286 (105.7 bits), Expect = 3.6e-25, P = 3.6e-25
 Identities = 59/109 (54%), Positives = 76/109 (69%)

Query:     7 QAAEKIGPAVRRQAVTVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVE 65
             +AA  + PA     + ++ LLQ +     LK+GV+ RGCNGLSYTL+YA ++ K DE V 
Sbjct:    23 RAALTLTPAA---VLRIKTLLQDKPDMVGLKVGVRQRGCNGLSYTLDYASQKDKLDEEVV 79

Query:    66 DKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
               GVK+ ID KA + ++GT+MDFV+ KL SEFVF NPN KG CGCGESF
Sbjct:    80 QDGVKVFIDKKAQLSLLGTEMDFVESKLSSEFVFNNPNIKGTCGCGESF 128

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

DICTYBASE|DDB_G0280173 isca1 "iron-sulfur cluster assembly 1 homolog" [Dictyostelium discoideum (taxid:44689)]

 Score = 275 (101.9 bits), Expect = 5.3e-24, P = 5.3e-24
 Identities = 47/87 (54%), Positives = 69/87 (79%)

Query:    35 LKLGVKARGCNGLSYTLNYADERAKFDE-LVEDKGVKILIDPKALMHVIGTKMDFVDDKL 93
             L+LG+K RGC+G+SYTL++A ++ KFDE +V DK + I++D KAL+ VIGT+MD++++ +
Sbjct:    43 LRLGIKERGCSGMSYTLDFATQKNKFDETVVADKDINIIVDSKALLSVIGTEMDYIEEPI 102

Query:    94 RSEFVFINPNSKGQCGCGESFMTTSSS 120
             + EF+FINPN+   CGCGESF T   S
Sbjct:   103 KKEFIFINPNATNTCGCGESFTTKDFS 129

GO:0051536 "iron-sulfur cluster binding" evidence=IEA;IC

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA;ISS

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA;ISS

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E2RM27 ISCA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
 Identities = 50/93 (53%), Positives = 67/93 (72%)

Query:    23 VRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
             ++ LL+ + +   LK+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct:    84 IKQLLKDKPEHVGLKVGVRTRGCNGLSYTLEYTKTKGDSDEEVVQDGVRVFIEKKAQLTL 143

Query:    82 IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   144 LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 176

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

UNIPROTKB|Q5ZJ74 ISCA1 "Iron-sulfur cluster assembly 1 homolog, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 50/93 (53%), Positives = 67/93 (72%)

Query:    23 VRHLLQ-QRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
             ++ LL+ Q +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct:    35 IKQLLKDQPEHVGVKVGVRTRGCNGLSYTLEYTKSKGDSDEEVVQDGVRVFIEKKAQLTL 94

Query:    82 IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:    95 LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 127

GO:0005198 "structural molecule activity" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1S4I4 ISCA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 49/93 (52%), Positives = 67/93 (72%)

Query:    23 VRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
             ++ LL+ + +   +K+GV+ RGCNGLSYTL Y   +   DE V   GV++ I+ KA + +
Sbjct:    76 IKQLLKDKPEHVGVKVGVRTRGCNGLSYTLEYTKTKGDSDEEVVQDGVRVFIEKKAQLTL 135

Query:    82 IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             +GT+MD+V+DKL SEFVF NPN KG CGCGESF
Sbjct:   136 LGTEMDYVEDKLSSEFVFNNPNIKGTCGCGESF 168

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0016226 "iron-sulfur cluster assembly" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8LBM4	ISAM1_ARATH	No assigned EC number	0.7407	0.9843	0.9197	yes	no
Q3SZG8	ISCA1_BOVIN	No assigned EC number	0.5268	0.7187	0.7131	yes	no
Q80W96	ISCA1_RAT	No assigned EC number	0.5268	0.7187	0.7131	yes	no
Q9BUE6	ISCA1_HUMAN	No assigned EC number	0.5268	0.7187	0.7131	yes	no
Q5ZJ74	ISCA1_CHICK	No assigned EC number	0.5376	0.7187	0.7131	yes	no
Q9D924	ISCA1_MOUSE	No assigned EC number	0.5268	0.7187	0.7131	yes	no
Q4QRC6	ISCA1_DANRE	No assigned EC number	0.5376	0.7187	0.7131	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	estExt_Genewise1_v1.C_LG_VIII0441	hypothetical protein (142 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	estExt_Genewise1_v1.C_LG_VII0255	cysteine desulfurase/transaminase (EC-2.8.1.7) (452 aa)	•			•			•		0.605
	gw1.IX.3183.1	selenocysteine lyase/cysteine desulfurase (EC-2.8.1.7) (468 aa)	•						•		0.509
	fgenesh4_pg.C_LG_IV000050	hypothetical protein (554 aa)	•			•			•		0.462
	gw1.598.1.1	hypothetical protein (210 aa)	•						•		0.408

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	128
TIGR00049	105	TIGR00049, TIGR00049, Iron-sulfur cluster assembly	8e-40
COG0316	110	COG0316, sufA, Fe-S cluster assembly scaffold prot	1e-34
TIGR02011	105	TIGR02011, IscA, iron-sulfur cluster assembly prot	5e-28
PRK09502	107	PRK09502, iscA, iron-sulfur cluster assembly prote	9e-27
TIGR01997	107	TIGR01997, sufA_proteo, FeS assembly scaffold SufA	4e-25
pfam01521	91	pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosy	2e-23
PRK13623	115	PRK13623, PRK13623, iron-sulfur cluster insertion	2e-19
PRK09504	122	PRK09504, sufA, iron-sulfur cluster assembly scaff	3e-18
PLN03082	163	PLN03082, PLN03082, Iron-sulfur cluster assembly;	3e-12

>gnl|CDD|232799 TIGR00049, TIGR00049, Iron-sulfur cluster assembly accessory protein

 Score =  128 bits (324), Expect = 8e-40
 Identities = 43/96 (44%), Positives = 65/96 (67%), Gaps = 2/96 (2%)

Query: 23  VRHLLQQRQRPY--LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           ++ LL     P   L++GVK  GC+GL Y L + DE  + DE+ E  GVK+++DPK+L +
Sbjct: 10  IKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPY 69

Query: 81  VIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 116
           + G+++D+V++ L S F F NPN+KG CGCG+SF  
Sbjct: 70  LDGSEIDYVEELLGSGFTFTNPNAKGTCGCGKSFSV 105

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|223393 COG0316, sufA, Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

 Score =  115 bits (291), Expect = 1e-34
 Identities = 44/96 (45%), Positives = 61/96 (63%), Gaps = 2/96 (2%)

Query: 23  VRHLLQQRQRPYLKL--GVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           V+ LL +     L L  GVK  GC+G  Y L + DE  + D + E  GVK+++DPK+L +
Sbjct: 15  VKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPY 74

Query: 81  VIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMT 116
           + GT++D+V+D L S F F NPN+K  CGCGESF  
Sbjct: 75  LEGTEIDYVEDLLGSGFTFKNPNAKSSCGCGESFSV 110

Length = 110

>gnl|CDD|213674 TIGR02011, IscA, iron-sulfur cluster assembly protein IscA

 Score = 98.7 bits (246), Expect = 5e-28
 Identities = 47/96 (48%), Positives = 63/96 (65%), Gaps = 1/96 (1%)

Query: 20  AVTVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A  V   L  R + + L+LGVK  GC+G++Y L + DE    D + EDKGVKI+ID K+L
Sbjct: 8   AARVNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSL 67

Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
            ++ GT++DFV + L   F F NPN K +CGCGESF
Sbjct: 68  QYLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 103

This model represents the IscA component of the ISC system for iron-sulfur cluster assembly. The ISC system consists of IscRASU, HscAB and an Isc-specific ferredoxin. IscA previously was believed to act as a scaffold and now is seen as an iron donor protein. This clade is limited to the proteobacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 105

>gnl|CDD|181914 PRK09502, iscA, iron-sulfur cluster assembly protein; Provisional

 Score = 95.3 bits (237), Expect = 9e-27
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 20  AVTVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A  V   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L
Sbjct: 10  AARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSL 69

Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             + GT++DFV + L   F F NPN K +CGCGESF
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

Length = 107

>gnl|CDD|131052 TIGR01997, sufA_proteo, FeS assembly scaffold SufA

 Score = 91.0 bits (226), Expect = 4e-25
 Identities = 41/96 (42%), Positives = 62/96 (64%), Gaps = 1/96 (1%)

Query: 20  AVTVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A+ +R L+ +R +   ++LGVK  GC G+ Y L+   E  K D+L+E  G K+ + P+A+
Sbjct: 10  AIHIRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAV 69

Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           + ++GT++DFV   LR  F F NPN+   CGCGESF
Sbjct: 70  LFILGTQVDFVRTTLRQGFKFNNPNATSACGCGESF 105

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 107

>gnl|CDD|110518 pfam01521, Fe-S_biosyn, Iron-sulphur cluster biosynthesis

 Score = 86.1 bits (214), Expect = 2e-23
 Identities = 32/81 (39%), Positives = 51/81 (62%), Gaps = 1/81 (1%)

Query: 23  VRHLLQQRQRP-YLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           ++ LL        L++GV+  GC+G SY L + DE  + DE+ E  GV +++D K+L ++
Sbjct: 11  IKKLLDLEGGENGLRIGVRYGGCSGFSYGLTFEDEPDEGDEVFEQDGVTVVVDEKSLPYL 70

Query: 82  IGTKMDFVDDKLRSEFVFINP 102
            GT++DFV++ L S F F NP
Sbjct: 71  EGTEIDFVEELLGSGFTFSNP 91

This family is involved in iron-sulphur cluster biosynthesis. Its members include proteins that are involved in nitrogen fixation such as the HesB and HesB-like proteins. Length = 91

>gnl|CDD|184186 PRK13623, PRK13623, iron-sulfur cluster insertion protein ErpA; Provisional

 Score = 76.9 bits (190), Expect = 2e-19
 Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)

Query: 20  AVTVRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKA 77
           A  V+ L+++   P LKL V     GC+G  Y   + ++  + D  +E +GV +++DP +
Sbjct: 17  AAKVKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMS 76

Query: 78  LMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           L +++G ++D+ +    S FV  NPN+K  CGCG SF
Sbjct: 77  LQYLVGAEVDYTEGLEGSRFVIKNPNAKTTCGCGSSF 113

Length = 115

>gnl|CDD|181915 PRK09504, sufA, iron-sulfur cluster assembly scaffold protein; Provisional

 Score = 74.4 bits (183), Expect = 3e-18
 Identities = 35/96 (36%), Positives = 55/96 (57%), Gaps = 1/96 (1%)

Query: 20  AVTVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A  +R L+ ++     ++LGVK  GC G  Y L+   E  K D + E  G K+ +  +A+
Sbjct: 25  AAHIRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAM 84

Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             + GT++D+V + L   F F NP ++ +CGCGESF
Sbjct: 85  PFIDGTEVDYVREGLNQIFKFHNPKAQNECGCGESF 120

Length = 122

>gnl|CDD|215564 PLN03082, PLN03082, Iron-sulfur cluster assembly; Provisional

 Score = 59.6 bits (144), Expect = 3e-12
 Identities = 30/82 (36%), Positives = 46/82 (56%), Gaps = 1/82 (1%)

Query: 35  LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDDKLR 94
           L+L V+  GC+G  Y     D+    D + E  GVK+++D  +   V G  +D+V++ +R
Sbjct: 80  LRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGATVDYVEELIR 139

Query: 95  SEFVF-INPNSKGQCGCGESFM 115
           S FV   NP++ G C C  SFM
Sbjct: 140 SAFVVSTNPSAVGGCSCKSSFM 161

Length = 163

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	128
COG0316	110	sufA Fe-S cluster assembly scaffold protein [Postt	100.0
PRK09502	107	iscA iron-sulfur cluster assembly protein; Provisi	100.0
TIGR02011	105	IscA iron-sulfur cluster assembly protein IscA. Th	100.0
TIGR01997	107	sufA_proteo FeS assembly scaffold SufA. This model	100.0
PRK13623	115	iron-sulfur cluster insertion protein ErpA; Provis	100.0
PRK09504	122	sufA iron-sulfur cluster assembly scaffold protein	100.0
PLN03082	163	Iron-sulfur cluster assembly; Provisional	100.0
TIGR00049	105	Iron-sulfur cluster assembly accessory protein. Pr	100.0
KOG1120	134	consensus Fe-S cluster biosynthesis protein ISA1 (	99.97
PRK11190	192	Fe/S biogenesis protein NfuA; Provisional	99.94
TIGR03341	190	YhgI_GntY IscR-regulated protein YhgI. IscR (TIGR0	99.93
TIGR01911	92	HesB_rel_seleno HesB-like selenoprotein. This mode	99.93
KOG1119	199	consensus Mitochondrial Fe-S cluster biosynthesis	99.93
PF01521	112	Fe-S_biosyn: Iron-sulphur cluster biosynthesis; In	99.89
COG4841	95	Uncharacterized protein conserved in bacteria [Fun	99.55
COG4918	114	Uncharacterized protein conserved in bacteria [Fun	97.68
COG3564	116	Uncharacterized protein conserved in bacteria [Fun	96.57
PF05610	95	DUF779: Protein of unknown function (DUF779); Inte	95.8

>COG0316 sufA Fe-S cluster assembly scaffold protein [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.8e-37  Score=213.78  Aligned_cols=107  Identities=41%  Similarity=0.751  Sum_probs=101.4

Q ss_pred             hhhcccCHhHHHHHHHHHHHHhcC-C-CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCc
Q 033078            7 QAAEKIGPAVRRQAVTVRHLLQQR-Q-RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGT   84 (128)
Q Consensus         7 ~~~~~IT~~A~~~~~~ik~ll~~~-~-~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~   84 (128)
                      ...+.|||+|+++   ++++++++ + +.+|||+|+++||+|++|+|.+++++.++|.+++.+|++++||+.+++||+|.
T Consensus         2 ~~~itlT~~Aa~~---v~~ll~~~~~~~~~lRv~V~~gGCsG~~Y~~~~~~~~~~~D~v~e~~g~~v~vD~~S~~~L~G~   78 (110)
T COG0316           2 AMMITLTDAAAAR---VKALLAKEGEENLGLRVGVKGGGCSGFQYGLEFDDEINEDDTVFEQDGVKVVVDPKSLPYLEGT   78 (110)
T ss_pred             CCceeeCHHHHHH---HHHHHHhccCCCceEEEEEeCCCCCCcEeEEEEcCCCCCCCEEEEeCCEEEEEChhhhhhhcCC
Confidence            3568999999999   99999987 3 45899999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           85 KMDFVDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        85 ~IDy~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      +|||+++..+++|+|+|||++..||||+||+.
T Consensus        79 ~IDyv~~~~g~~F~~~NPNA~~~CgCg~Sf~v  110 (110)
T COG0316          79 EIDYVEDLLGSGFTFKNPNAKSSCGCGESFSV  110 (110)
T ss_pred             EEEEEEcCcCCceEEECCCCCccccCCCCCCC
Confidence            99999999999999999999999999999973

>PRK09502 iscA iron-sulfur cluster assembly protein; Provisional

Probab=100.00  E-value=3.9e-36  Score=207.67  Aligned_cols=104  Identities=41%  Similarity=0.777  Sum_probs=98.1

Q ss_pred             cccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEEe
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDF   88 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~IDy   88 (128)
                      ++|||+|+++   |++++++++. .+|||+++.+||+|++|.|.|+++++++|.+++.+|++|+||+.++.||+|++|||
T Consensus         3 i~iT~~A~~~---i~~l~~~~~~~~~LRi~v~~~GCsG~~Y~l~~~~~~~~~D~~~~~~g~~v~id~~s~~~l~g~~IDy   79 (107)
T PRK09502          3 ITLSDSAAAR---VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLDF   79 (107)
T ss_pred             EEECHHHHHH---HHHHHhCcCCCceEEEEEECCCcCCeeeEeeecCCCCCCCEEEEcCCeEEEEeHHHHhHhCCCEEEE
Confidence            7899999999   9999976543 47999999999999999999987899999999999999999999999999999999


Q ss_pred             eeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           89 VDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        89 ~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      +++..+++|+|+|||+..+||||+||+.
T Consensus        80 ~~~~~~~~F~f~NPna~~~CgCG~Sf~~  107 (107)
T PRK09502         80 VKEGLNEGFKFTNPNVKDECGCGESFHV  107 (107)
T ss_pred             eeCCCCceEEEECCCCCCccCCCCCeeC
Confidence            9999999999999999999999999973

>TIGR02011 IscA iron-sulfur cluster assembly protein IscA

Probab=100.00  E-value=7.4e-36  Score=205.57  Aligned_cols=104  Identities=44%  Similarity=0.771  Sum_probs=97.9

Q ss_pred             cccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEEe
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDF   88 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~IDy   88 (128)
                      ++|||+|+++   |++++++++. .+|||+++.+||+|++|.|.++++++++|++++.+|++|+||+.++.||+|++|||
T Consensus         1 I~iT~~A~~~---i~~~~~~~~~~~~lRi~v~~~GCsG~~y~l~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~IDy   77 (105)
T TIGR02011         1 ITLTDSAAAR---VNTFLANRGKGFGLRLGVKTSGCSGMAYVLEFVDEPTPDDIVFEDKGVKIVIDGKSLQYLDGTQLDF   77 (105)
T ss_pred             CEECHHHHHH---HHHHHhccCCCceEEEEEeCCCCCCEEEEeeecCCCCCCCEEEEcCCEEEEEcHHHhHHhCCCEEEE
Confidence            5799999999   9999987644 57999999999999999999988899999999999999999999999999999999


Q ss_pred             eeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           89 VDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        89 ~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      +++.++++|+|+|||+..+||||+||+.
T Consensus        78 ~~~~~~~~F~~~nPna~~~CgCg~Sf~~  105 (105)
T TIGR02011        78 VKEGLNEGFKFTNPNVKDECGCGESFHV  105 (105)
T ss_pred             ecCCCcceEEEECCCCCccCCCCCCccC
Confidence            9999999999999999999999999973

This clade is limited to the proteobacteria.

>TIGR01997 sufA_proteo FeS assembly scaffold SufA

Probab=100.00  E-value=7.9e-36  Score=206.05  Aligned_cols=105  Identities=40%  Similarity=0.786  Sum_probs=99.0

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEE
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKM   86 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~I   86 (128)
                      +.++|||+|+++   |++++++++. .+|||+++.+||+|++|.|.++++++++|.+++.+|++|+||+.++.||+|++|
T Consensus         1 ~~i~iT~~A~~~---i~~l~~~~~~~~~lRi~v~~~GC~G~~y~~~l~~~~~~~D~v~~~~g~~v~id~~s~~~l~g~~I   77 (107)
T TIGR01997         1 AVITLTDAAAIH---IRELVAKRPEAVGIRLGVKKTGCAGMEYVLDLVSEPKKDDDLIEHDGAKVFVAPEAVLFILGTQV   77 (107)
T ss_pred             CeEEECHHHHHH---HHHHHhcCCCCcEEEEEEECCCCCCcEEEeeecCCCCCCCEEEecCCEEEEEcHHHHhhhCCCEE
Confidence            358999999999   9999987654 579999999999999999999888999999999999999999999999999999


Q ss_pred             EeeeCCCCceEEEeCCCCCCCCCCCCCcC
Q 033078           87 DFVDDKLRSEFVFINPNSKGQCGCGESFM  115 (128)
Q Consensus        87 Dy~e~~~g~gF~i~nP~~~~~CgCG~sf~  115 (128)
                      ||+++..+++|+|+|||+..+||||+||+
T Consensus        78 Dy~~~~~~~~F~~~NPn~~~~CgCG~Sf~  106 (107)
T TIGR01997        78 DFVRTTLRQGFKFNNPNATSACGCGESFE  106 (107)
T ss_pred             EEEEcCCcceEEEECCCCCCccCCCCCcc
Confidence            99999999999999999999999999996

This model represents the SufA protein of the SUF system of iron-sulfur cluster biosynthesis. This system performs FeS biosynthesis even during oxidative stress and tends to be absent in obligate anaerobic and microaerophilic bacteria.

>PRK13623 iron-sulfur cluster insertion protein ErpA; Provisional

Probab=100.00  E-value=1.3e-35  Score=207.26  Aligned_cols=106  Identities=28%  Similarity=0.612  Sum_probs=99.1

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcE
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQR--PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTK   85 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~~--~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~   85 (128)
                      ..++|||+|+++   |+++++.++.  .+|||+++.+||+|++|.|.++++++++|++++.+|++|+||+.+++||+|++
T Consensus         8 ~~i~iT~~A~~~---i~~~~~~~~~~~~~LRi~v~~~GCsG~~y~l~l~~~~~~~D~v~e~~gv~v~id~~s~~~l~g~~   84 (115)
T PRK13623          8 LPLVFTDAAAAK---VKELIEEEGNPDLKLRVYITGGGCSGFQYGFTFDEQVNEDDTTIEKQGVTLVVDPMSLQYLVGAE   84 (115)
T ss_pred             cceEECHHHHHH---HHHHHhhCCCCceEEEEEEeCCCCCCcEEEEEECCCCCCCCEEEEcCCEEEEEcHHHHHHhCCCE
Confidence            458999999999   9999976543  46999999999999999999998889999999999999999999999999999


Q ss_pred             EEeeeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           86 MDFVDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        86 IDy~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      |||+++..+.+|+|+|||+..+||||+||+.
T Consensus        85 IDy~~~~~~~~F~f~NPn~~~~CgCg~SF~~  115 (115)
T PRK13623         85 VDYTEGLEGSRFVIKNPNAKTTCGCGSSFSI  115 (115)
T ss_pred             EEeecCCCcceEEEECCCCCcCCCCCcCccC
Confidence            9999999999999999999999999999973

>PRK09504 sufA iron-sulfur cluster assembly scaffold protein; Provisional

Probab=100.00  E-value=2.3e-35  Score=208.39  Aligned_cols=106  Identities=34%  Similarity=0.663  Sum_probs=99.6

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEE
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKM   86 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~I   86 (128)
                      ..++|||+|+++   |++++++++. .+|||+++++||+|++|.|.++++++++|++++.+|++|+||+.++.||+|++|
T Consensus        16 ~~I~iT~~A~~~---i~~l~~~~~~~~~LRi~v~~gGCsG~~Y~~~l~~e~~~~D~v~e~~g~~v~Id~~s~~~L~g~~I   92 (122)
T PRK09504         16 QGLTLTPAAAAH---IRELMAKQPGMKGVRLGVKQTGCAGFGYVLDSVSEPDKDDLVFEHDGAKLFVPLQAMPFIDGTEV   92 (122)
T ss_pred             CCEEECHHHHHH---HHHHHhcCCCCceEEEEEECCCCCceEEEeeecCCCCCCCEEEEeCCEEEEEcHHHHHhhCCcEE
Confidence            458999999999   9999976654 579999999999999999999889999999999999999999999999999999


Q ss_pred             EeeeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           87 DFVDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        87 Dy~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      ||+++..+++|+|+|||+..+||||+||..
T Consensus        93 Dy~~~~~~~gF~f~NPna~~~CgCG~SF~v  122 (122)
T PRK09504         93 DYVREGLNQIFKFHNPKAQNECGCGESFGV  122 (122)
T ss_pred             EeecCCCcceEEEECCCCCCCcCCCCCeeC
Confidence            999999999999999999999999999963

>PLN03082 Iron-sulfur cluster assembly; Provisional

Probab=100.00  E-value=3.3e-35  Score=216.57  Aligned_cols=105  Identities=31%  Similarity=0.630  Sum_probs=99.3

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCC---CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcE
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQ---RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTK   85 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~---~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~   85 (128)
                      .|+|||+|+++   |+++++.++   ..+|||+|+.+||+|++|.|.++++++++|.+++.+|++|+||+.+++||+|++
T Consensus        54 ~I~lTd~A~~~---ik~l~~~~~~~~~~~LRl~V~~gGCSG~~Y~~~ld~~~~~~D~v~e~~Gv~vvVD~~s~~~L~Gs~  130 (163)
T PLN03082         54 AVHMTDNCIRR---LKELQTSEPSAEDKMLRLSVETGGCSGFQYVFELDDKTNSDDRVFEKDGVKLVVDNISYDFVKGAT  130 (163)
T ss_pred             ceEECHHHHHH---HHHHHHhCCCCCCceEEEEEecCCCCCceeeeEEccCCCCCCEEEecCCeEEEECHHHHHHhCCCE
Confidence            58999999999   999998754   247999999999999999999998888999999999999999999999999999


Q ss_pred             EEeeeCCCCceEEE-eCCCCCCCCCCCCCcCc
Q 033078           86 MDFVDDKLRSEFVF-INPNSKGQCGCGESFMT  116 (128)
Q Consensus        86 IDy~e~~~g~gF~i-~nP~~~~~CgCG~sf~~  116 (128)
                      |||+++..+.+|+| +|||+..+||||+||+.
T Consensus       131 IDYve~l~~~gF~f~~NPna~~~CgCG~SF~v  162 (163)
T PLN03082        131 VDYVEELIRSAFVVSTNPSAVGGCSCKSSFMV  162 (163)
T ss_pred             EEeecCCCCCeeEEecCCCCCCCcCCCCCEeC
Confidence            99999999999999 99999999999999986

>TIGR00049 Iron-sulfur cluster assembly accessory protein

Probab=100.00  E-value=4.6e-34  Score=195.71  Aligned_cols=102  Identities=41%  Similarity=0.817  Sum_probs=97.2

Q ss_pred             ccCHhHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEEe
Q 033078           11 KIGPAVRRQAVTVRHLLQQRQR--PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDF   88 (128)
Q Consensus        11 ~IT~~A~~~~~~ik~ll~~~~~--~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~IDy   88 (128)
                      +|||+|+++   |+++++.++.  .+|||+++.+||+|++|+|.++++++++|++++.+|++|+||+.+++||+|++|||
T Consensus         1 ~iT~~A~~~---l~~~~~~~~~~~~~lRi~~~~~Gc~G~~~~l~l~~~~~~~D~~~~~~gi~~~id~~~~~~l~~~~IDy   77 (105)
T TIGR00049         1 TLTDSAAKR---IKALLAGEGEPNLGLRVGVKGGGCSGLQYGLEFDDEPNEDDEVFEQDGVKVVVDPKSLPYLDGSEIDY   77 (105)
T ss_pred             CcCHHHHHH---HHHHHhcCCCCceEEEEEEecCCCCCeEEEEeecCCCCCCCEEEEcCCEEEEEeHHHHhhhCCCEEEE
Confidence            589999999   9999987754  68999999999999999999998888999999999999999999999999999999


Q ss_pred             eeCCCCceEEEeCCCCCCCCCCCCCcC
Q 033078           89 VDDKLRSEFVFINPNSKGQCGCGESFM  115 (128)
Q Consensus        89 ~e~~~g~gF~i~nP~~~~~CgCG~sf~  115 (128)
                      +++..+.+|+|+|||+..+||||+||+
T Consensus        78 ~~~~~~~~f~i~nPn~~~~c~cg~sf~  104 (105)
T TIGR00049        78 VEELLGSGFTFTNPNAKGTCGCGKSFS  104 (105)
T ss_pred             eecCCcceEEEECCCCCccCCCCcCcc
Confidence            999999999999999999999999997

Proteins in this subfamily appear to be associated with the process of FeS-cluster assembly. The HesB proteins are associated with the nif gene cluster and the Rhizobium gene IscN has been shown to be required for nitrogen fixation. Nitrogenase includes multiple FeS clusters and many genes for their assembly. The E. coli SufA protein is associated with SufS, a NifS homolog and SufD which are involved in the FeS cluster assembly of the FhnF protein. The Azotobacter protein IscA (homologs of which are also found in E.coli) is associated which IscS, another NifS homolog and IscU, a nifU homolog as well as other factors consistent with a role in FeS cluster chemistry. A homolog from Geobacter contains a selenocysteine in place of an otherwise invariant cysteine, further suggesting a role in redox chemistry.

>KOG1120 consensus Fe-S cluster biosynthesis protein ISA1 (contains a HesB-like domain) [Inorganic ion transport and metabolism]

Probab=99.97  E-value=6.6e-31  Score=184.42  Aligned_cols=108  Identities=56%  Similarity=1.045  Sum_probs=102.4

Q ss_pred             hhhhcccCHhHHHHHHHHHHHHhcC-CCCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCc
Q 033078            6 AQAAEKIGPAVRRQAVTVRHLLQQR-QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGT   84 (128)
Q Consensus         6 ~~~~~~IT~~A~~~~~~ik~ll~~~-~~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~   84 (128)
                      +-+++.+||.|.++   |++|++++ +...|||.|+..||+|++|.|.+...+...|.+++++|++|+|||+++..|-|+
T Consensus        26 ~k~~ltLTp~Av~~---ik~ll~~~~e~~~lrigVk~rGCnGlsYtleY~~~kgkfDE~VeqdGv~I~ie~KA~l~liGt  102 (134)
T KOG1120|consen   26 RKAALTLTPSAVNH---IKQLLSDKPEDVCLRIGVKQRGCNGLSYTLEYTKTKGKFDEVVEQDGVRIFIEPKALLTLIGT  102 (134)
T ss_pred             cccccccCHHHHHH---HHHHHHhCCcCceeEEEEecCCcCcceeeeeeeccCCCCcceeeecCcEEEEcccceeeeccc
Confidence            56789999999999   99999966 457899999999999999999999888899999999999999999999999999


Q ss_pred             EEEeeeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           85 KMDFVDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        85 ~IDy~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      ++||+++..+++|+|.|||+++.||||+||+.
T Consensus       103 eMDyvddkL~Sefvf~npna~gtcGcgeSf~~  134 (134)
T KOG1120|consen  103 EMDYVDDKLSSEFVFSNPNAKGTCGCGESFSV  134 (134)
T ss_pred             eehhhhhhhcCceEeeCCCccccccccccccC
Confidence            99999999999999999999999999999973

>PRK11190 Fe/S biogenesis protein NfuA; Provisional

Probab=99.94  E-value=3.1e-26  Score=172.87  Aligned_cols=94  Identities=21%  Similarity=0.311  Sum_probs=88.2

Q ss_pred             cccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeec--ccccccCCceeeeCCEEEEEccCchhhcCCcEE
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKARGCNGLSYTLNY--ADERAKFDELVEDKGVKILIDPKALMHVIGTKM   86 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~GC~G~~y~l~l--~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~I   86 (128)
                      ++|||+|+++   |++++++++. .+|||+|+++||+|++|+|.+  ++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         2 i~iTd~A~~~---i~~ll~~~~~~~~LRI~V~~gGCsG~~Y~~~~~~~~~~~~~D~v~e~~gv~v~Vd~~S~~~L~G~~I   78 (192)
T PRK11190          2 ITISDAAQAH---FAKLLANQEEGTQIRVFVINPGTPNAECGVSYCPPDAVEATDTELKFDGFSAYVDELSAPFLEDAEI   78 (192)
T ss_pred             cEECHHHHHH---HHHHHhcCCCCceEEEEEECCCcCCceeeeEEeecCCCCCCCEEEEeCCEEEEECcchHhHhCCCEE
Confidence            6899999999   9999987653 579999999999999999999  677889999999999999999999999999999


Q ss_pred             EeeeCCCCceEEEeCCCCCC
Q 033078           87 DFVDDKLRSEFVFINPNSKG  106 (128)
Q Consensus        87 Dy~e~~~g~gF~i~nP~~~~  106 (128)
                      ||+++..+++|+|+|||++.
T Consensus        79 Dyve~~~g~gF~f~NPNa~~   98 (192)
T PRK11190         79 DFVTDQLGSQLTLKAPNAKM   98 (192)
T ss_pred             EEeecCCCCceEEECCCCCC
Confidence            99999999999999999975

>TIGR03341 YhgI_GntY IscR-regulated protein YhgI

Probab=99.93  E-value=9.4e-26  Score=169.99  Aligned_cols=94  Identities=21%  Similarity=0.280  Sum_probs=87.3

Q ss_pred             cccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecCCCCCceeeeec--ccccccCCceeeeCCEEEEEccCchhhcCCcEE
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKARGCNGLSYTLNY--ADERAKFDELVEDKGVKILIDPKALMHVIGTKM   86 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~GC~G~~y~l~l--~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~I   86 (128)
                      ++|||+|+++   |++++++++. .+|||+|+++||+|++|+|.+  +++++++|.+++.+|++|+||+.+++||+|++|
T Consensus         1 I~IT~~A~~~---l~~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~~~~~~~~~~~D~v~e~~g~~v~Vd~~s~~~L~g~~I   77 (190)
T TIGR03341         1 ITITEAAQAY---LAKLLAKQNEGTGIRVFVVNPGTPYAECCVSYCPPDEVEPSDIKLEFNGFSAYVDALSAPFLEDAVI   77 (190)
T ss_pred             CEECHHHHHH---HHHHHhhCCCCceEEEEEECCccCCceeeeEEcccCCCCCCCEEEEeCCEEEEEccchhhHhCCCEE
Confidence            5799999999   9999987653 479999999999999999998  567889999999999999999999999999999


Q ss_pred             EeeeCCCCceEEEeCCCCCC
Q 033078           87 DFVDDKLRSEFVFINPNSKG  106 (128)
Q Consensus        87 Dy~e~~~g~gF~i~nP~~~~  106 (128)
                      ||+++.++++|+|+|||++.
T Consensus        78 Dyve~~~g~gF~f~NPna~~   97 (190)
T TIGR03341        78 DFVTDRMGGQLTLKAPNAKM   97 (190)
T ss_pred             EEeecCCCceeEEeCCccCC
Confidence            99999999999999999975

IscR (TIGR02010) is an iron-sulfur cluster-binding transcriptional regulator (see Genome Property GenProp0138). Members of this protein family include YhgI, whose expression is under control of IscR, and show sequence similarity to IscA, a known protein of iron-sulfur cluster biosynthesis. These two lines of evidence strongly suggest a role as an iron-sulfur cluster biosynthesis protein. An older study designated this protein GntY and suggested a role for it and for the product of an adjacent gene, based on complementation studies, in gluconate utilization.

>TIGR01911 HesB_rel_seleno HesB-like selenoprotein

Probab=99.93  E-value=7e-26  Score=152.95  Aligned_cols=88  Identities=14%  Similarity=0.286  Sum_probs=81.3

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCCC--CcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEE
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQR--PYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKM   86 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~~--~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~I   86 (128)
                      .|+|||+|+++   |++++++++.  .+|||+|+++||+|++|.|.+++ ++++|.+++.+|++|+||+.+++||.|++|
T Consensus         3 ~i~lT~~A~~~---i~~ll~~~~~~~~~LRi~v~~gGCsG~~Y~~~ld~-~~~~D~v~~~~gv~v~vD~~s~~~l~G~~i   78 (92)
T TIGR01911         3 IVAMSDDAYEE---FKDFLKENDIDNDVIRIHFAGMGCMGPMFNLIADE-EKEGDEIEKIHDLTFLIDKNLIDQFGGFSI   78 (92)
T ss_pred             ceEECHHHHHH---HHHHHHhCCCCCceEEEEEeCCCccCcccceEecC-CCCCCEEEEeCCEEEEECHHHHHHhCCCEE
Confidence            47899999999   9999987643  46999999999999999999986 589999999999999999999999999999


Q ss_pred             EeeeCCCCceEEEe
Q 033078           87 DFVDDKLRSEFVFI  100 (128)
Q Consensus        87 Dy~e~~~g~gF~i~  100 (128)
                      ||+++..+.+|+|+
T Consensus        79 Dy~~~~~g~gF~~~   92 (92)
T TIGR01911        79 ECAEENFGAGFSLD   92 (92)
T ss_pred             EEecCCCCCcEEeC
Confidence            99999999999984

This model represents a family of small proteins related to HesB and its close homologs, which are likely to be invovlved in iron-sulfur cluster assembly (See TIGR00049 and pfam01521). Several members are selenoproteins, with a TGA codon and Sec residue that aligns to the conserved Cys of the HesB domain. A variable Cys/Ser/Gly-rich C-terminal region is not included in the seed alignment and model.

>KOG1119 consensus Mitochondrial Fe-S cluster biosynthesis protein ISA2 (contains a HesB-like domain) [Energy production and conversion; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.5e-26  Score=169.35  Aligned_cols=104  Identities=23%  Similarity=0.584  Sum_probs=97.7

Q ss_pred             cccCHhHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEEee
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFV   89 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~IDy~   89 (128)
                      ++|+|+|.++   ++|+....+ ..|||.|.++||+|++|.+.+|....++|.++..+|.+|+||..++.+++|.+|||.
T Consensus        94 ~~lsds~~kr---l~EI~~~~p-e~LRl~VegGGCsGFQYkf~LD~~in~dD~vf~e~~arVVvD~~SL~~~kGatvdy~  169 (199)
T KOG1119|consen   94 LHLSDSCSKR---LKEIYENSP-EFLRLTVEGGGCSGFQYKFRLDNKINNDDRVFVENGARVVVDNVSLNLLKGATVDYT  169 (199)
T ss_pred             EEehhHHHHH---HHHHHhCCc-ceEEEEEecCCccceEEEEEecCCCCCcceEEeeCCcEEEEeccchhhccCceeehH
Confidence            7899999999   888887654 689999999999999999999999999999999999999999999999999999999


Q ss_pred             eCCCCceEEE-eCCCCCCCCCCCCCcCcC
Q 033078           90 DDKLRSEFVF-INPNSKGQCGCGESFMTT  117 (128)
Q Consensus        90 e~~~g~gF~i-~nP~~~~~CgCG~sf~~~  117 (128)
                      ++.++..|+| .||.++.+||||+||..+
T Consensus       170 ~ELIrSsF~ivnNP~A~~gCsCgSSF~ik  198 (199)
T KOG1119|consen  170 NELIRSSFRIVNNPSAKQGCSCGSSFDIK  198 (199)
T ss_pred             HHHhhhhheeecCcccccCCCCCcccccC
Confidence            9999999998 489999999999999865

>PF01521 Fe-S_biosyn: Iron-sulphur cluster biosynthesis; InterPro: IPR000361 The proteins in this entry are variously annotated as iron-sulphur cluster insertion protein or Fe/S biogenesis protein

Probab=99.89  E-value=1.3e-23  Score=145.07  Aligned_cols=100  Identities=32%  Similarity=0.607  Sum_probs=92.8

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCCCCcEEEEEecCC--------CC-Cceeeeeccccc-ccCCceeeeCCEEEEEccCch
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARG--------CN-GLSYTLNYADER-AKFDELVEDKGVKILIDPKAL   78 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~~~~IRI~v~~~G--------C~-G~~y~l~l~~~~-~e~D~v~~~~Gi~~~id~~~~   78 (128)
                      .++|||+|+++   |++++++++.. |||++..+|        |+ |++|.|.+++++ .+.|.+++.+|++|+|++.+.
T Consensus         2 ~I~iT~~A~~~---l~~~~~~~~~~-irl~~~~gg~p~~~~~~C~~g~~y~l~~~~~~~~~~D~~~~~~~~~i~i~~~~~   77 (112)
T PF01521_consen    2 KITITDAAAER---LKQLLKEDPKK-IRLFVDDGGSPYSREGCCSIGFSYSLALVDKPDEEYDIVIESNGFTIYIDKYSL   77 (112)
T ss_dssp             EEEE-HHHHHH---HHHHHHCTTES-EEEEEEEESSCCGGSS-TTSEEEEEEEEESSTSTTSCEEEEETTEEEEEEGGGH
T ss_pred             EEEECHHHHHH---HHHHHhcCCCE-EEEEEECCCcccccCCCCCCCcEEeEEEeecccccceEEEeeeEEEEEEeccHh
Confidence            37899999999   99999987655 999999998        99 999999999877 799999999999999999999


Q ss_pred             hhc-CCcEEEeeeCCCCceEEEeCCCCCCCCCCCC
Q 033078           79 MHV-IGTKMDFVDDKLRSEFVFINPNSKGQCGCGE  112 (128)
Q Consensus        79 ~~L-~g~~IDy~e~~~g~gF~i~nP~~~~~CgCG~  112 (128)
                      +|| ++++|||.++..+.+|++.||+....|+||.
T Consensus        78 ~~l~~~~~iD~~~~~~~~~f~~~~~~~~~~~~~~~  112 (112)
T PF01521_consen   78 WYLDEGLTIDYVEDLGGFGFKSDNPNLDSNCGCGD  112 (112)
T ss_dssp             HHH-TTEEEEEEEETTEEEEEEETTTEEEEECECE
T ss_pred             hhhhCCCEEEEEEccCccEEEECCCCcCceeccCC
Confidence            999 9999999999999999999999999999984

They appear to be involved in Fe-S cluster biogenesis. This family includes IscA, HesB, YadR and YfhF-like proteins. The hesB gene is expressed only under nitrogen fixation conditions []. IscA, an 11 kDa member of the hesB family of proteins, binds iron and [2Fe-2S] clusters, and participates in the biosynthesis of iron-sulphur proteins. IscA is able to bind at least 2 iron ions per dimer []. Other members of this family include various hypothetical proteins that also contain the NifU-like domain (IPR001075 from INTERPRO) suggesting that they too are able to bind iron and are involved in Fe-S cluster biogenesis. The HesB family are found in species as divergent as Homo sapiens (Human) and Haemophilus influenzae suggesting that these proteins are involved in basic cellular functions []. ; PDB: 2D2A_A 1X0G_D 1NWB_A 2K4Z_A 1R94_B 1R95_A 1S98_B 2P2E_A 2QGO_A 2APN_A.

>COG4841 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=99.55  E-value=1.8e-14  Score=95.73  Aligned_cols=87  Identities=17%  Similarity=0.253  Sum_probs=76.0

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCCCCcEEEEEecCCCC----CceeeeecccccccCCceeeeCCEEEEEccCchhhcCC-
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCN----GLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIG-   83 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~~~~IRI~v~~~GC~----G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g-   83 (128)
                      .++||+.|.+-   +++.+...++..||++++-+||+    |++.++..+ .|+|--...+++|++|+|+.+.+||+++ 
T Consensus         2 ni~vtd~A~~w---fk~E~~l~~g~~vrffvRyGG~~~~~~GFS~gv~~e-~PkE~g~~q~~Dgltffiee~DlWYF~d~   77 (95)
T COG4841           2 NIEVTDQALKW---FKEELDLEEGNKVRFFVRYGGCSSLQQGFSLGVAKE-VPKEIGYKQEYDGLTFFIEEKDLWYFDDH   77 (95)
T ss_pred             ceEEcHHHHHH---HHHhcCCCCCCEEEEEEEEcCcccccCCcceeeecc-CchhhchheeecCeEEEEecCceEEEcCC
Confidence            36899999999   99999999999999999999998    566666554 4777677778999999999999999999 


Q ss_pred             -cEEEeeeCCCCceEEE
Q 033078           84 -TKMDFVDDKLRSEFVF   99 (128)
Q Consensus        84 -~~IDy~e~~~g~gF~i   99 (128)
                       ++|||.++.....|+.
T Consensus        78 d~~v~y~~~~Dei~fs~   94 (95)
T COG4841          78 DLKVDYSPDTDEISFSY   94 (95)
T ss_pred             cEEEeccCCCCcceeec
Confidence             9999999988888765

>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.68  E-value=9.3e-05  Score=50.77  Aligned_cols=78  Identities=14%  Similarity=0.177  Sum_probs=60.5

Q ss_pred             cccCHhHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCC---ceeeeecccccccCCceeeeCCEEEEEccCchhhcCC-
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQ--RPYLKLGVKARGCNG---LSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIG-   83 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~--~~~IRI~v~~~GC~G---~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g-   83 (128)
                      +.+|++|+..   |+..+....  ...+|....+.+|.+   +.|.+  .++.+..|..++.++.++||-.-..-||++ 
T Consensus         3 Itftd~a~~~---l~~a~d~nl~~~~hl~ydtEgc~Ca~SGi~t~rl--vae~tg~d~~idsn~gPiyik~~~~~Ff~D~   77 (114)
T COG4918           3 ITFTDKAADK---LKAAGDVNLVFDDHLLYDTEGCACAGSGISTYRL--VAEETGFDASIDSNFGPIYIKDYGSYFFQDE   77 (114)
T ss_pred             EEecHHHHHH---HHHhhccCcCccceEEEeccccccccCCcceEEE--EEeccCcccccccCCCcEEEEecceeEecce
Confidence            5789999999   988887653  356777777777764   45555  445567899999999999998887777777 


Q ss_pred             cEEEeeeCC
Q 033078           84 TKMDFVDDK   92 (128)
Q Consensus        84 ~~IDy~e~~   92 (128)
                      ++|||.+..
T Consensus        78 mtidyN~~~   86 (114)
T COG4918          78 MTIDYNPSY   86 (114)
T ss_pred             eeeecCCcc
Confidence            999999864

>COG3564 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.57  E-value=0.023  Score=38.89  Aligned_cols=90  Identities=20%  Similarity=0.184  Sum_probs=61.1

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCCCCcEEEEEecCCCCCceeeeeccc---ccccCCcee-eeCCEEEEEccCchhhcCC
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQRPYLKLGVKARGCNGLSYTLNYAD---ERAKFDELV-EDKGVKILIDPKALMHVIG   83 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~~~~IRI~v~~~GC~G~~y~l~l~~---~~~e~D~v~-~~~Gi~~~id~~~~~~L~g   83 (128)
                      +.|.+|++|.+-   |+++..+.+.  | +|-..+||+.=+--|....   -..+.|+.. +.+|++|||......+-+-
T Consensus         5 ~~V~aT~aAl~L---i~~l~~~hgp--v-mFHQSGGCCDGSsPMCYP~~~fivGd~DvlLG~i~gvPvyIs~~QyeaWKH   78 (116)
T COG3564           5 ARVLATPAALDL---IAELQAEHGP--V-MFHQSGGCCDGSSPMCYPRADFIVGDNDVLLGEIDGVPVYISGPQYEAWKH   78 (116)
T ss_pred             cceecCHHHHHH---HHHHHHhcCC--E-EEeccCCccCCCCCccccccceeecCCceEEeeeCCEEEEecCcHHhhhhc
Confidence            568899999999   8877765432  3 3446788863333343321   112456555 6899999999988877665


Q ss_pred             --cEEEeeeCCCCceEEEeCCCC
Q 033078           84 --TKMDFVDDKLRSEFVFINPNS  104 (128)
Q Consensus        84 --~~IDy~e~~~g~gF~i~nP~~  104 (128)
                        ++||.+... |+.|.+.|-..
T Consensus        79 TqLIIDVVpGR-GGmFSLdng~E  100 (116)
T COG3564          79 TQLIIDVVPGR-GGMFSLDNGRE  100 (116)
T ss_pred             cEEEEEEecCC-CceeEccCCcc
Confidence              788988753 67899986544

>PF05610 DUF779: Protein of unknown function (DUF779); InterPro: IPR008497 This family consists of several bacterial proteins of unknown function

Probab=95.80  E-value=0.051  Score=36.85  Aligned_cols=65  Identities=22%  Similarity=0.276  Sum_probs=47.3

Q ss_pred             ecCCCCCceeeeeccc---ccccCCcee-eeCCEEEEEccCchhhcCC--cEEEeeeCCCCceEEEeCCCCC
Q 033078           40 KARGCNGLSYTLNYAD---ERAKFDELV-EDKGVKILIDPKALMHVIG--TKMDFVDDKLRSEFVFINPNSK  105 (128)
Q Consensus        40 ~~~GC~G~~y~l~l~~---~~~e~D~v~-~~~Gi~~~id~~~~~~L~g--~~IDy~e~~~g~gF~i~nP~~~  105 (128)
                      ..+||+.-+-=|-+..   ...+.|+.+ ++.|++|||.++...|.+.  ++||-++. .+.+|.+.+|...
T Consensus        17 QSGGCCDGSaPmC~p~gef~~g~~DV~LG~i~g~~fym~~~qfeywkht~L~iDVv~G-rG~~FSLE~~~G~   87 (95)
T PF05610_consen   17 QSGGCCDGSAPMCYPAGEFRVGDSDVLLGEIGGVPFYMSKDQFEYWKHTQLTIDVVPG-RGGGFSLEAPEGK   87 (95)
T ss_pred             eCCCCCCCCcceeEeCCceecCCCcEEEEEecCeEEEEchHHHHHhhCcEEEEEEEec-CCCeeeccCCCCc
Confidence            5788874343444421   123556655 7899999999999999998  88898874 4789999988653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	128
1r94_A	118	Crystal Structure Of Isca (mercury Derivative) Leng		3e-20
1s98_A	107	E.Coli Isca Crystal Structure To 2.3 A Length = 107		6e-20
1nwb_A	124	Solution Nmr Structure Of Protein Aq_1857 From Aqui		2e-14
2d2a_A	145	Crystal Structure Of Escherichia Coli Sufa Involved		4e-14
2apn_A	114	Hi1723 Solution Structure Length = 114		5e-12
1x0g_A	112	Crystal Structure Of Isca With The [2fe-2s] Cluster		2e-06

>pdb|1R94|A Chain A, Crystal Structure Of Isca (mercury Derivative) Length = 118

Iteration: 1
 Score = 93.6 bits (231), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/96 (45%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 20  AVTVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A  V   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L
Sbjct: 10  AARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSL 69
Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             + GT++DFV + L   F F NPN K +CGCGESF
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

>pdb|1S98|A Chain A, E.Coli Isca Crystal Structure To 2.3 A Length = 107

Iteration: 1
 Score = 92.4 bits (228), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 62/96 (64%), Gaps = 1/96 (1%)
Query: 20  AVTVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A  V   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K++
Sbjct: 10  AARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSM 69
Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             + GT++DFV + L   F F NPN K +CGCGESF
Sbjct: 70  QFLDGTQLDFVKEGLNEGFKFTNPNVKDECGCGESF 105

>pdb|1NWB|A Chain A, Solution Nmr Structure Of Protein Aq_1857 From Aquifex Aeolicus: Northeast Structural Genomics Consortium Target Qr6 Length = 124

Iteration: 1
 Score = 73.9 bits (180), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 60/110 (54%), Gaps = 2/110 (1%)
Query: 7   QAAEKIGPAVRRQAVTVRHLLQQR--QRPYLKLGVKARGCNGLSYTLNYADERAKFDELV 64
           QA + I     +    ++ + Q+   + P L++ V   GC+G  Y + + D   + D + 
Sbjct: 4   QAQQFIFKVTDKAVEEIKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVF 63
Query: 65  EDKGVKILIDPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           E  GVK++IDP ++ +V G ++D+V D +   F   NPN+ G CGCG SF
Sbjct: 64  EYDGVKVVIDPFSMPYVNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSF 113

>pdb|2D2A|A Chain A, Crystal Structure Of Escherichia Coli Sufa Involved In Biosynthesis Of Iron-Sulfur Clusters Length = 145

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 38/96 (39%), Positives = 56/96 (58%), Gaps = 1/96 (1%)
Query: 20  AVTVRHLL-QQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           A+ +R L+ +Q     ++LGVK  GC G  Y L+   E  K D L E  G K+ +  +A+
Sbjct: 48  AIHIRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAM 107
Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
             + GT++DFV + L   F F NP ++ +CGCGESF
Sbjct: 108 PFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESF 143

>pdb|2APN|A Chain A, Hi1723 Solution Structure Length = 114

Iteration: 1
 Score = 65.9 bits (159), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 51/94 (54%), Gaps = 2/94 (2%)
Query: 23  VRHLLQQRQRPYLKLGV--KARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           V+ L+ + +   LKL V     GC+G  Y   + ++    D  +E  GV+++IDP +L +
Sbjct: 19  VKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQY 78
Query: 81  VIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +IG  +D+ +    S F   NPN+   CGCG SF
Sbjct: 79  LIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSF 112

>pdb|1X0G|A Chain A, Crystal Structure Of Isca With The [2fe-2s] Cluster Length = 112

Iteration: 1
 Score = 47.8 bits (112), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 47/95 (49%)
Query: 25  HLLQQRQRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGT 84
           H +++ Q   L++ V+   C    Y L    E    D L + +G  I I  +A   + G 
Sbjct: 18  HGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGL 77
Query: 85  KMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSS 119
           ++D+++D +   F F NPN+   CGCG +F  + S
Sbjct: 78  RVDYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS 112

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	128
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	1e-48
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	1e-48
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	8e-40
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	2e-34
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	2e-32
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	3e-27

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A Length = 118

 Score =  150 bits (382), Expect = 1e-48
 Identities = 43/100 (43%), Positives = 63/100 (63%), Gaps = 1/100 (1%)

Query: 23  VRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           V   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K+L  +
Sbjct: 13  VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFL 72

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSSG 121
            GT++DFV + L   F F NPN K +CGCGESF   ++  
Sbjct: 73  DGTQLDFVKEGLNEGFKFTNPNVKDECGCGESFKLAAALD 112

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli} Length = 145

 Score =  151 bits (383), Expect = 1e-48
 Identities = 37/102 (36%), Positives = 55/102 (53%), Gaps = 5/102 (4%)

Query: 15  AVRRQAVTVRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILI 73
           A       +R L+ ++     ++LGVK  GC G  Y L+   E  K D L E  G K+ +
Sbjct: 47  AAIH----IRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFV 102

Query: 74  DPKALMHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFM 115
             +A+  + GT++DFV + L   F F NP ++ +CGCGESF 
Sbjct: 103 PLQAMPFIDGTEVDFVREGLNQIFKFHNPKAQNECGCGESFG 144

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus} Length = 112

 Score =  128 bits (323), Expect = 8e-40
 Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 4/101 (3%)

Query: 23  VRHLLQQRQRP----YLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKAL 78
           +  L     R      L++ V+   C    Y L    E    D L + +G  I I  +A 
Sbjct: 12  LERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAA 71

Query: 79  MHVIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSS 119
             + G ++D+++D +   F F NPN+   CGCG +F  + S
Sbjct: 72  ELLRGLRVDYIEDLMGGAFRFHNPNASQTCGCGMAFRVSRS 112

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae} Length = 114

 Score =  114 bits (288), Expect = 2e-34
 Identities = 31/94 (32%), Positives = 51/94 (54%), Gaps = 2/94 (2%)

Query: 23  VRHLLQQRQRPYLKL--GVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           V+ L+ + +   LKL   +   GC+G  Y   + ++    D  +E  GV+++IDP +L +
Sbjct: 19  VKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQY 78

Query: 81  VIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           +IG  +D+ +    S F   NPN+   CGCG SF
Sbjct: 79  LIGGTVDYTEGLEGSRFTVNNPNATSTCGCGSSF 112

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1 Length = 124

 Score =  109 bits (275), Expect = 2e-32
 Identities = 32/94 (34%), Positives = 53/94 (56%), Gaps = 2/94 (2%)

Query: 23  VRHLLQQRQRP--YLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           ++ + Q+       L++ V   GC+G  Y + + D   + D + E  GVK++IDP ++ +
Sbjct: 20  IKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPY 79

Query: 81  VIGTKMDFVDDKLRSEFVFINPNSKGQCGCGESF 114
           V G ++D+V D +   F   NPN+ G CGCG SF
Sbjct: 80  VNGAELDYVVDFMGGGFTIRNPNATGSCGCGSSF 113

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum} Length = 125

 Score = 96.6 bits (241), Expect = 3e-27
 Identities = 23/118 (19%), Positives = 42/118 (35%), Gaps = 14/118 (11%)

Query: 1   MASFLAQAAEKIG--PAVRRQAVT--------VRHLLQQRQRP--YLKLGVKARGCNGLS 48
           M S         G  P                V    +Q       L+L         + 
Sbjct: 1   MGSSHHHHHHSSGLVPRGSHMMFKLTPAAAEQVLKAAKQGGTEGMCLRLAAGRNPDGSID 60

Query: 49  YTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDFVDD-KLRSEFVFINPNSK 105
           Y + + D+  + D  +  +GV+I+I P  +  +  T +D+V+    +  F+F+NP   
Sbjct: 61  YRMGF-DDLTEDDIRLTSEGVEIVIAPDYVSLLDQTTLDYVELEPGQFHFIFLNPRDP 117

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	128
1r94_A	118	Protein YFHF; tetrameric, beta barrel, iron-sulfur	100.0
1nwb_A	124	Hypothetical protein AQ_1857; QR6, structural geno	100.0
1x0g_A	112	ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domai	100.0
2d2a_A	145	SUFA protein; iron-sulfur cluster, iron, ISCA, YAD	100.0
2apn_A	114	Protein HI1723; HI1723 solution structure, structu	100.0
2k4z_A	125	DSRR; ISCA/SUFA/HESB like fold, structural genomic	99.94
2p2e_A	128	Putative Fe-S biosynthesis protein; hypothetical p	99.8
2qgo_A	141	Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC	99.76

>1r94_A Protein YFHF; tetrameric, beta barrel, iron-sulfur cluster protein, pseudo-symmetric motifs, metal transport; 2.30A {Escherichia coli} SCOP: b.124.1.1 PDB: 1r95_A 1s98_A

Probab=100.00  E-value=6.9e-38  Score=218.77  Aligned_cols=109  Identities=39%  Similarity=0.731  Sum_probs=89.7

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEE
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQ-RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMD   87 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~-~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~ID   87 (128)
                      .|+|||+|+++   |++++++++ ..+|||+|+.+||+|++|+|.++++++++|.+++.+|++|+||+.+++||+|++||
T Consensus         2 ~I~iT~~A~~~---l~~ll~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~L~g~~ID   78 (118)
T 1r94_A            2 SITLSDSAAAR---VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSLQFLDGTQLD   78 (118)
T ss_dssp             CCEECHHHHHH---HHHHHHHHCCCSEEEEEEEECSSSCEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             ceEECHHHHHH---HHHHHhhCCCCceEEEEEECCCCCCeEEEEEEccCCCCCceEEEECCEEEEEEHHHHHHhCCCEEE
Confidence            37899999999   999997654 46899999999999999999998888899999999999999999999999999999


Q ss_pred             eeeCCCCceEEEeCCCCCCCCCCCCCcCcCCCC
Q 033078           88 FVDDKLRSEFVFINPNSKGQCGCGESFMTTSSS  120 (128)
Q Consensus        88 y~e~~~g~gF~i~nP~~~~~CgCG~sf~~~~~~  120 (128)
                      |+++..+++|+|.|||+..+||||+||+.+...
T Consensus        79 y~~~~~g~gF~~~NPna~~~CgCG~SF~~~~~~  111 (118)
T 1r94_A           79 FVKEGLNEGFKFTNPNVKDECGCGESFKLAAAL  111 (118)
T ss_dssp             EEEETTEEEEEEECTTCCC--------------
T ss_pred             EEcCCCcCceEEeCCCCCCCCCCCCCcCCCCCc
Confidence            999999999999999999999999999987654

>1nwb_A Hypothetical protein AQ_1857; QR6, structural genomics, protein structure initiative, NESG, reduced dimensionality PSI; NMR {Aquifex aeolicus} SCOP: b.124.1.1

Probab=100.00  E-value=3.5e-38  Score=222.06  Aligned_cols=112  Identities=31%  Similarity=0.609  Sum_probs=87.9

Q ss_pred             hhhhcccCHhHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCC
Q 033078            6 AQAAEKIGPAVRRQAVTVRHLLQQRQ--RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIG   83 (128)
Q Consensus         6 ~~~~~~IT~~A~~~~~~ik~ll~~~~--~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g   83 (128)
                      ++..|+|||+|+++   |+++++.++  +.+|||+|+.+||+|++|+|.+++++.++|.+++.+|++|+||+.+++||+|
T Consensus         6 ~~m~I~iT~~A~~~---l~~ll~~~~~~~~~LRv~V~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G   82 (124)
T 1nwb_A            6 QQFIFKVTDKAVEE---IKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNG   82 (124)
T ss_dssp             CCCCCEECHHHHHH---HHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTT
T ss_pred             cCceEEECHHHHHH---HHHHHhhCCCCCceEEEEEEcCCCCCcEEEEEEccCCCCCceEEEeCCEEEEEehHHHHHhCC
Confidence            34569999999999   999998775  4589999999999999999999988789999999999999999999999999


Q ss_pred             cEEEeeeCCCCceEEEeCCCCCCCCCCCCCcCcCCCC
Q 033078           84 TKMDFVDDKLRSEFVFINPNSKGQCGCGESFMTTSSS  120 (128)
Q Consensus        84 ~~IDy~e~~~g~gF~i~nP~~~~~CgCG~sf~~~~~~  120 (128)
                      ++|||+++..+++|+|+|||+..+||||+||+.++.+
T Consensus        83 ~~IDy~~~~~g~gF~~~NPna~~~CgCG~SF~~~~~~  119 (124)
T 1nwb_A           83 AELDYVVDFMGGGFTIRNPNATGSCGCGSSFSCGLEH  119 (124)
T ss_dssp             CEEEEEEETTEEEEEEECC------------------
T ss_pred             CEEEEEcCCCcceEEEeCCCCCcCCCCCCCcCCCccc
Confidence            9999999999999999999999999999999988765

>1x0g_A ISCA; [2Fe-2S], biosynthesis, cyanobacteria, domain swapping, Fe- S cluster, iron, iron-sulfur cluster protein, scaffold, sulfur; 2.50A {Thermosynechococcus elongatus}

Probab=100.00  E-value=3.7e-38  Score=218.07  Aligned_cols=106  Identities=26%  Similarity=0.529  Sum_probs=96.2

Q ss_pred             cccCHhHHHHHHHHHHHHhcC-C---CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcE
Q 033078           10 EKIGPAVRRQAVTVRHLLQQR-Q---RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTK   85 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~-~---~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~   85 (128)
                      ++|||+|+++   |+++++++ +   +.+|||+|+.+||+|++|+|.++++++++|.+++.+|++|+||+.+++||+|++
T Consensus         2 i~iT~~A~~~---l~~ll~~~~~~~~~~~lRv~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~vd~~s~~~l~g~~   78 (112)
T 1x0g_A            2 VELTPAAIQE---LERLQTHGVRRGQAAILRIQVQPSECGDWRYDLALVAEPKPTDLLTQSQGWTIAIAAEAAELLRGLR   78 (112)
T ss_dssp             CEECHHHHHH---TCCCC----------CEEEEEEEBSSSSEEEEEEECSSCCTTCEEECSSSCCEEECGGGHHHHTTCE
T ss_pred             eEECHHHHHH---HHHHHhhccCCCCceEEEEEEEcCCCCCeEEEEEECcCCCCCCEEEEeCCEEEEEeHHHHHHhCCCE
Confidence            7899999999   99998776 4   348999999999999999999998888999999999999999999999999999


Q ss_pred             EEeeeCCCCceEEEeCCCCCCCCCCCCCcCcCC
Q 033078           86 MDFVDDKLRSEFVFINPNSKGQCGCGESFMTTS  118 (128)
Q Consensus        86 IDy~e~~~g~gF~i~nP~~~~~CgCG~sf~~~~  118 (128)
                      |||+++..+.+|+|+|||+..+||||+||+.+.
T Consensus        79 IDy~~~~~g~gF~~~nPna~~~CgCG~SF~~~~  111 (112)
T 1x0g_A           79 VDYIEDLMGGAFRFHNPNASQTCGCGMAFRVSR  111 (112)
T ss_dssp             EEEEEETTEEEEEEECTTCSEECSSSSEEECCC
T ss_pred             EEEEecCCCCEEEEeCCCCCcCCCCCCccccCC
Confidence            999999999999999999999999999999764

>2d2a_A SUFA protein; iron-sulfur cluster, iron, ISCA, YADR, metal transport; 2.70A {Escherichia coli}

Probab=100.00  E-value=1.4e-36  Score=219.28  Aligned_cols=104  Identities=37%  Similarity=0.672  Sum_probs=98.8

Q ss_pred             cccCHhHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEEe
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQ-RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMDF   88 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~-~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~IDy   88 (128)
                      |+|||+|+++   |++++++++ ..+|||+|+++||+|++|+|.++++++++|.+++.+|++|+||+.+++||+|++|||
T Consensus        41 ItiTe~Aa~~---lk~ll~~~~~~~~LRv~V~~gGCsG~~Y~l~l~~~~~~~D~v~e~~Gv~v~VD~~s~~~L~G~~IDy  117 (145)
T 2d2a_A           41 LTLTPAAAIH---IRELVAKQPGMVGVRLGVKQTGCAGFGYVLDSVSEPDKDDLLFEHDGAKLFVPLQAMPFIDGTEVDF  117 (145)
T ss_dssp             CEECHHHHHH---HHHHHHHSTTCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEEE
T ss_pred             EEECHHHHHH---HHHHHhcCCCCceEEEEEECCCCCCcEEEEEECcCCCCCCeEEEECCEEEEEeHHHHHhhCCCEEEE
Confidence            8999999999   999998764 468999999999999999999998888999999999999999999999999999999


Q ss_pred             eeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           89 VDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        89 ~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      +++..+++|+|+|||+..+||||+||+.
T Consensus       118 ~e~l~g~gF~f~NPna~~~CGCG~SF~v  145 (145)
T 2d2a_A          118 VREGLNQIFKFHNPKAQNECGCGESFGV  145 (145)
T ss_dssp             EEETTEEEEEEECTTTCSCCCCBCEEEC
T ss_pred             EcCCCcceEEEeCCCCCcccCCCCCccC
Confidence            9999999999999999999999999973

>2apn_A Protein HI1723; HI1723 solution structure, structural genomics, structure 2 function project, S2F, unknown function; NMR {Haemophilus influenzae}

Probab=100.00  E-value=9.2e-37  Score=211.54  Aligned_cols=105  Identities=29%  Similarity=0.592  Sum_probs=98.5

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEE
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQ--RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKM   86 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~--~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~I   86 (128)
                      .|+|||+|+++   |++++++++  +.+|||+++.+||+|++|.|.+++++.++|.+++.+|++|+||+.+++||+|++|
T Consensus         8 ~i~iT~~A~~~---i~~l~~~~~~~~~~lRi~v~~gGCsG~~y~l~~~~~~~~~D~v~e~~Gv~v~id~~s~~~l~g~~I   84 (114)
T 2apn_A            8 PLTFTDAAANK---VKSLISEEENTDLKLRVYITGGGCSGFQYGFTFDEKVNDGDLTIEKSGVQLVIDPMSLQYLIGGTV   84 (114)
T ss_dssp             SCEECSHHHHH---HHHHHHHHTCSSCEEEECCCCSSSSCSCCCEEECCSCCSSCEEEECSSSEEEECHHHHHHHTTCEE
T ss_pred             cEEECHHHHHH---HHHHHHhCCCCCceEEEEEeCCCCCCcEEEEEECcCCCCCCcEEEECCEEEEEehHHHHHhCCCEE
Confidence            48999999999   999987653  4689999999999999999999987788999999999999999999999999999


Q ss_pred             EeeeCCCCceEEEeCCCCCCCCCCCCCcCc
Q 033078           87 DFVDDKLRSEFVFINPNSKGQCGCGESFMT  116 (128)
Q Consensus        87 Dy~e~~~g~gF~i~nP~~~~~CgCG~sf~~  116 (128)
                      ||+++..+++|+|+|||+..+||||+||+.
T Consensus        85 Dy~~~~~g~~F~~~nPna~~~CgCG~SF~~  114 (114)
T 2apn_A           85 DYTEGLEGSRFTVNNPNATSTCGCGSSFSI  114 (114)
T ss_dssp             EEECSSSCCEEEEECHHHHCCCCCCCCSCC
T ss_pred             EEEcCCCcceEEEeCCCCCcCCCCCCCccC
Confidence            999999999999999999999999999973

>2k4z_A DSRR; ISCA/SUFA/HESB like fold, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Allochromatium vinosum}

Probab=99.94  E-value=1.9e-26  Score=162.47  Aligned_cols=96  Identities=25%  Similarity=0.395  Sum_probs=88.9

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCC--CCcEEEEEe--cCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCC
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQ--RPYLKLGVK--ARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIG   83 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~--~~~IRI~v~--~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g   83 (128)
                      ..|+|||+|+++   |++++++++  +.+|||+|+  ++|  |++|+|.++++ .++|.+++.+|++|+||+.+++||+|
T Consensus        21 m~ItiT~~Aa~~---ik~ll~~~~~~~~~LRv~V~~~~gG--G~~Y~l~l~~~-~~~D~v~e~~Gv~v~VD~~s~~~L~G   94 (125)
T 2k4z_A           21 MMFKLTPAAAEQ---VLKAAKQGGTEGMCLRLAAGRNPDG--SIDYRMGFDDL-TEDDIRLTSEGVEIVIAPDYVSLLDQ   94 (125)
T ss_dssp             SCEEECHHHHHH---HHHHHHHSSSTTCEEEEEEEECTTS--CEEEEEEEECC-CSSSCEEECSSCEEECCTTTHHHHTT
T ss_pred             CEEEECHHHHHH---HHHHHhhCCCCCceEEEEEEecCCC--CEEEEEEecCC-CCCceEEEECCEEEEEeHHHHHhhCC
Confidence            468999999999   999998775  368999999  888  99999999987 88999999999999999999999999


Q ss_pred             cEEEeee-CCCCceEEEeCCCCCCCCC
Q 033078           84 TKMDFVD-DKLRSEFVFINPNSKGQCG  109 (128)
Q Consensus        84 ~~IDy~e-~~~g~gF~i~nP~~~~~Cg  109 (128)
                      ++|||++ +..+.+|+|+|||+...|.
T Consensus        95 ~~IDy~~~~l~g~gF~~~NPna~~~~p  121 (125)
T 2k4z_A           95 TTLDYVELEPGQFHFIFLNPRDPTYRP  121 (125)
T ss_dssp             EEEEEEEEETTEEEEEEECSSSCSSCC
T ss_pred             CEEEEEeCCCCcCeEEECCCCCCccCC
Confidence            9999999 9999999999999998774

>2p2e_A Putative Fe-S biosynthesis protein; hypothetical protein, beta-barrel, 10399L structural genomics, protein structure initiative, PSI-2; 2.48A {Lactobacillus salivarius} SCOP: b.124.1.1

Probab=99.80  E-value=1.9e-20  Score=132.17  Aligned_cols=94  Identities=9%  Similarity=0.139  Sum_probs=84.7

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCCC-CcEEEEEecC-------CCCC-ceeeeeccccccc----CCceeeeCCEEEEEc
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQR-PYLKLGVKAR-------GCNG-LSYTLNYADERAK----FDELVEDKGVKILID   74 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~~-~~IRI~v~~~-------GC~G-~~y~l~l~~~~~e----~D~v~~~~Gi~~~id   74 (128)
                      -.|.|||+|+++   |+++++.++. ..||+. +++       ||+| ..|.|.+++++.+    +|.+++.+|++|+||
T Consensus         3 M~ItlT~~A~~~---l~~~l~~~~~~l~Lr~~-dg~g~y~k~ggCsg~~~Y~l~~v~~~~~~~~~~D~~~e~~g~~v~vd   78 (128)
T 2p2e_A            3 LKITVTDDAAKK---LQRYTDDSNAVLLLDFD-DGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYK   78 (128)
T ss_dssp             CEEEECHHHHHH---HHHHHTCTTEEEEEEEC-SSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEEC
T ss_pred             cEEEECHHHHHH---HHHHHhcCCceEEEEEe-CCCCccccCCCCCCCCEEEEEEeccCCCCCCCCCEEEEeCCEEEEEC
Confidence            358999999999   9999987755 579998 555       7999 6999999988877    899999999999999


Q ss_pred             cCchhhcCC-cEEEeeeCC----CCce-EEEeCCCCC
Q 033078           75 PKALMHVIG-TKMDFVDDK----LRSE-FVFINPNSK  105 (128)
Q Consensus        75 ~~~~~~L~g-~~IDy~e~~----~g~g-F~i~nP~~~  105 (128)
                      +.++.||+| ++|||+++.    .+++ |.|.|||+.
T Consensus        79 ~~s~~~ldgg~~iDy~~~~~~l~L~s~~f~~~NPN~~  115 (128)
T 2p2e_A           79 GYSKMYMDDNMKISLNTNNSLLRLTGDNSGELMPALS  115 (128)
T ss_dssp             GGGGGGSCSEEEEEECSSSSCEEEEETTTEEEEEEEC
T ss_pred             cchHHhhCCCeEEEEeCCCceEEecCCccEEECCCCe
Confidence            999999996 999999998    8899 999999986

>2qgo_A Putative Fe-S biosynthesis protein; PSI-2, NYSGXRC, 10399G, Fe-S cluster protein, structural GEN protein structure initiative; 2.04A {Lactobacillus acidophilus}

Probab=99.76  E-value=1.5e-19  Score=129.51  Aligned_cols=89  Identities=12%  Similarity=0.145  Sum_probs=72.5

Q ss_pred             hhcccCHhHHHHHHHHHHHHhcCCCCcE-------EEEEecCCCC-CceeeeecccccccC-CceeeeC-CEEEEEccCc
Q 033078            8 AAEKIGPAVRRQAVTVRHLLQQRQRPYL-------KLGVKARGCN-GLSYTLNYADERAKF-DELVEDK-GVKILIDPKA   77 (128)
Q Consensus         8 ~~~~IT~~A~~~~~~ik~ll~~~~~~~I-------RI~v~~~GC~-G~~y~l~l~~~~~e~-D~v~~~~-Gi~~~id~~~   77 (128)
                      -.++|||+|+++   |+++++.++...|       |+.++++||+ |++|.|.+++++.++ |.+++.+ |++|+||+.+
T Consensus         4 M~ItlTd~Aa~~---ik~~l~~~~~l~L~~~Dgv~r~~v~gGGCSiG~~Y~l~~~~e~~~dyD~~~e~~gGv~v~Vd~~s   80 (141)
T 2qgo_A            4 LNIKFTDNAVDY---LKRREILDKILILITDDGGGKYSIQGGSCSMGAHFSIIWLDKVDPDYPVKIANEQNVKIYTSDFD   80 (141)
T ss_dssp             CBEEECHHHHHH---HHHTTCTTSEEEEEECSSCSTTCC---------CEEEEEESSCCTTCCEECBCSSCCEEEECHHH
T ss_pred             eEEEECHHHHHH---HHHHHhhccceeeecCCCceEEEEeCccCCCCCEEEEEEeecCCCCCCEEEEeCCCEEEEECchH
Confidence            358999999999   9999987755578       9999999999 999999999888899 9999999 5999999999


Q ss_pred             hhhcC-CcEEEeeeCCCCceEEEeCCC
Q 033078           78 LMHVI-GTKMDFVDDKLRSEFVFINPN  103 (128)
Q Consensus        78 ~~~L~-g~~IDy~e~~~g~gF~i~nP~  103 (128)
                      ++||+ |++|||+++    .|.+++|.
T Consensus        81 l~yLd~G~~IDy~~~----~l~Lks~s  103 (141)
T 2qgo_A           81 KTMLGPNMVMDYNAG----SLSLSSDE  103 (141)
T ss_dssp             HTTSCSSEEEEEETT----EEEEEETT
T ss_pred             HHHhcCCCEEeEECC----EEEEcCCC
Confidence            99999 999999964    78888764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	128
d1s98a_	97	b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {	5e-21
d1nwba_	101	b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquif	7e-17

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]} Length = 97

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

 Score = 78.9 bits (194), Expect = 5e-21
 Identities = 35/86 (40%), Positives = 54/86 (62%), Gaps = 1/86 (1%)

Query: 23  VRHLLQQRQRPY-LKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHV 81
           V   L  R + + L+LGV+  GC+G++Y L + DE    D + EDKGVK+++D K++  +
Sbjct: 12  VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFL 71

Query: 82  IGTKMDFVDDKLRSEFVFINPNSKGQ 107
            GT++DFV + L   F F NPN K +
Sbjct: 72  DGTQLDFVKEGLNEGFKFTNPNVKDE 97

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]} Length = 101

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

 Score = 68.2 bits (166), Expect = 7e-17
 Identities = 25/82 (30%), Positives = 46/82 (56%), Gaps = 2/82 (2%)

Query: 23  VRHLLQQR--QRPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMH 80
           ++ + Q+   + P L++ V   GC+G  Y + + D   + D + E  GVK++IDP ++ +
Sbjct: 20  IKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPY 79

Query: 81  VIGTKMDFVDDKLRSEFVFINP 102
           V G ++D+V D +   F   NP
Sbjct: 80  VNGAELDYVVDFMGGGFTIRNP 101

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	128
d1s98a_	97	Fe-S scaffold protein IscA (YfhF) {Escherichia col	99.97
d1nwba_	101	Hypothetical protein Aq_1857 {Aquifex aeolicus [Ta	99.94
d2p2ea1	118	Putative Fe-S biosynthesis protein LSL1730 {Lactob	98.25

>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Fe-S scaffold protein IscA (YfhF)
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=1.4e-30  Score=174.41  Aligned_cols=95  Identities=37%  Similarity=0.664  Sum_probs=89.7

Q ss_pred             hcccCHhHHHHHHHHHHHHhcCC-CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCCcEEE
Q 033078            9 AEKIGPAVRRQAVTVRHLLQQRQ-RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIGTKMD   87 (128)
Q Consensus         9 ~~~IT~~A~~~~~~ik~ll~~~~-~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g~~ID   87 (128)
                      +|+|||+|+++   |+++++.++ ..+|||.|+++||+|++|.|.+++++.++|.+++.+|++|+||+.+.+||+|++||
T Consensus         1 ~I~iT~~A~~~---i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~~~~~~D~~~~~~g~~i~id~~s~~~L~G~~ID   77 (97)
T d1s98a_           1 SITLSDSAAAR---VNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVDEPTPEDIVFEDKGVKVVVDGKSMQFLDGTQLD   77 (97)
T ss_dssp             CCEECHHHHHH---HHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEESSCCTTEEEEEETTEEEEEEGGGHHHHTTCEEE
T ss_pred             CEEECHHHHHH---HHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecccCCCCcEEEEcCCCEEEEeHHHHHHhCCCEEE
Confidence            58999999999   999998775 45799999999999999999999888899999999999999999999999999999


Q ss_pred             eeeCCCCceEEEeCCCCCC
Q 033078           88 FVDDKLRSEFVFINPNSKG  106 (128)
Q Consensus        88 y~e~~~g~gF~i~nP~~~~  106 (128)
                      |+++..+++|+|+|||+++
T Consensus        78 y~~~~~~~gF~f~NPNak~   96 (97)
T d1s98a_          78 FVKEGLNEGFKFTNPNVKD   96 (97)
T ss_dssp             EECSSTTCEEEEECTTSCC
T ss_pred             EeecCCcCceEEECCCCCC
Confidence            9999999999999999974

>d1nwba_ b.124.1.1 (A:) Hypothetical protein Aq_1857 {Aquifex aeolicus [TaxId: 63363]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Hypothetical protein Aq 1857
species: Aquifex aeolicus [TaxId: 63363]

Probab=99.94  E-value=4.2e-28  Score=163.14  Aligned_cols=94  Identities=29%  Similarity=0.541  Sum_probs=87.8

Q ss_pred             hhhhcccCHhHHHHHHHHHHHHhcCC--CCcEEEEEecCCCCCceeeeecccccccCCceeeeCCEEEEEccCchhhcCC
Q 033078            6 AQAAEKIGPAVRRQAVTVRHLLQQRQ--RPYLKLGVKARGCNGLSYTLNYADERAKFDELVEDKGVKILIDPKALMHVIG   83 (128)
Q Consensus         6 ~~~~~~IT~~A~~~~~~ik~ll~~~~--~~~IRI~v~~~GC~G~~y~l~l~~~~~e~D~v~~~~Gi~~~id~~~~~~L~g   83 (128)
                      .+.-++|||+|+++   |+++++.++  ..+|||.|+++||+|++|.|.++++++++|.+++.+|++|+||+.+++||+|
T Consensus         6 ~~~mi~iT~~A~~~---i~~l~~~~~~~~~~lRi~v~~gGC~G~~Y~l~~~~~~~~~D~v~~~~g~~i~id~~s~~~L~G   82 (101)
T d1nwba_           6 QQFIFKVTDKAVEE---IKKVAQENNIENPILRIRVVPGGCSGFQYAMGFDDTVEEGDHVFEYDGVKVVIDPFSMPYVNG   82 (101)
T ss_dssp             CCCCCEECHHHHHH---HHHHHHTTTCSSCEEEECCCCCCTTCCCCCCCEECSCCSSCCCCCCSSSEEEECTTTGGGSTT
T ss_pred             cCCcEEECHHHHHH---HHHHHHhcCCCCceEEEEEeCCCCCceeEEEeeccccccCceEEecCCeeEEECHHHHhHhCC
Confidence            44568999999999   999998764  3589999999999999999999988889999999999999999999999999


Q ss_pred             cEEEeeeCCCCceEEEeCC
Q 033078           84 TKMDFVDDKLRSEFVFINP  102 (128)
Q Consensus        84 ~~IDy~e~~~g~gF~i~nP  102 (128)
                      ++|||+++..+++|+|+||
T Consensus        83 ~~IDy~~~~~~~~F~f~NP  101 (101)
T d1nwba_          83 AELDYVVDFMGGGFTIRNP  101 (101)
T ss_dssp             CEEEEEEETTEEEEEEECC
T ss_pred             CEEEEeecCCCCeEEEeCc
Confidence            9999999999999999999

>d2p2ea1 b.124.1.1 (A:3-120) Putative Fe-S biosynthesis protein LSL1730 {Lactobacillus salivarius [TaxId: 1624]}

class: All beta proteins
fold: HesB-like domain
superfamily: HesB-like domain
family: HesB-like domain
domain: Putative Fe-S biosynthesis protein LSL1730
species: Lactobacillus salivarius [TaxId: 1624]

Probab=98.25  E-value=1.6e-06  Score=58.34  Aligned_cols=89  Identities=11%  Similarity=0.203  Sum_probs=66.3

Q ss_pred             cccCHhHHHHHHHHHHHHhcCCCCcEEEEEe--------cCCCC-Cceeeeecccc----cccCCceeeeCCEEEEEccC
Q 033078           10 EKIGPAVRRQAVTVRHLLQQRQRPYLKLGVK--------ARGCN-GLSYTLNYADE----RAKFDELVEDKGVKILIDPK   76 (128)
Q Consensus        10 ~~IT~~A~~~~~~ik~ll~~~~~~~IRI~v~--------~~GC~-G~~y~l~l~~~----~~e~D~v~~~~Gi~~~id~~   76 (128)
                      ++|||.|+++   |++.+...+ ..|.+...        ++||+ +-.|.|-+.++    +.+-|+.++.+-.+|++.+.
T Consensus         3 ItiT~~A~~~---L~~~~~~~~-~~L~L~~dDG~g~yS~gggC~i~g~f~L~~v~~~~~~~~~yd~~iesn~g~i~~~~~   78 (118)
T d2p2ea1           3 ITVTDDAAKK---LQRYTDDSN-AVLLLDFDDGVGALSKVGVCSLNSDFRILVVSKDMDYKKDYNEVIDSNIGKFYYKGY   78 (118)
T ss_dssp             EEECHHHHHH---HHHHHTCTT-EEEEEEECSSCSGGGGSSCCCCSCCEEEEEEETTSSCTTTSCEEEEETTSCEEECGG
T ss_pred             EEECHHHHHH---HHHhhCCCC-CEEEEEEeCCCCccccCCccccCCEEEEEEEeCCCCCCcccceeecCCCccEEEccc
Confidence            6899999999   888876543 34555543        56886 55677777543    23457889988779999999


Q ss_pred             chhhcCC-cEEEeeeCCCCceEEEeCCCC
Q 033078           77 ALMHVIG-TKMDFVDDKLRSEFVFINPNS  104 (128)
Q Consensus        77 ~~~~L~g-~~IDy~e~~~g~gF~i~nP~~  104 (128)
                      ...||++ ++|||.+.  ..-|+++.|+.
T Consensus        79 ~~~ffd~~m~ld~~~~--~~~l~LkSd~s  105 (118)
T d2p2ea1          79 SKMYMDDNMKISLNTN--NSLLRLTGDNS  105 (118)
T ss_dssp             GGGGSCSEEEEEECSS--SSCEEEEETTT
T ss_pred             chhhcCCCcEEEEcCC--CCEEEEeCCCc
Confidence            9999988 89999875  35688876754