Citrus Sinensis ID: 033114

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------
MSSGGMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
ccccccccccccccccHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccEEEEccccHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHcccccEEEEEEcccccccccccc
cccccccccHHHHHccHHHHHHHHHHHHHHcccEEEEEEEEccccccccccccEEEEEcccEHHHHHHHHHHHcccccccccEEEEccEccccccEHHHHHHHHccccccEEEEEEccccccccccc
mssggmaksyfKQEHDLEKRRAEAARIRekypdripVIVEKaersdipnidkkkylvpadltvgQFVYVIRKRIKLSAEKAIFIFvdnvlpptgAIMSAIYEEKKDEDGFLYVTYsgentfgshipv
mssggmaksyfkqehDLEKRRAEAarirekypdripvivekaersdipnidkkkylvpadltvGQFVYVIRKRIKLSAEKAIFifvdnvlppTGAIMSAIYEEKKDEDGFLYVTYSgentfgshipv
MSSGGMAKSYFKQEHDLekrraeaarirekYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
*********************************RIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGE*********
***************DLEKRRAEAARIREKYPDRIPVIV*********NIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI**
MSSGGMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
************QEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS*I**
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSGGMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHIPV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query127 2.2.26 [Sep-21-2011]
Q8VYK7121 Autophagy-related protein yes no 0.952 1.0 0.909 1e-58
Q9LZZ9121 Autophagy-related protein no no 0.944 0.991 0.825 2e-54
Q6Z1D5120 Autophagy-related protein yes no 0.921 0.975 0.871 3e-54
A2YS06120 Autophagy-related protein N/A no 0.921 0.975 0.871 3e-54
Q8S926122 Autophagy-related protein no no 0.913 0.950 0.836 3e-53
Q8S927119 Autophagy-related protein no no 0.921 0.983 0.829 5e-53
Q9SL04120 Autophagy-related protein no no 0.921 0.975 0.846 6e-53
Q7XPR1119 Autophagy-related protein yes no 0.921 0.983 0.854 7e-53
A2XXR7119 Autophagy-related protein N/A no 0.921 0.983 0.854 7e-53
Q69RC4119 Autophagy-related protein no no 0.929 0.991 0.796 2e-51
>sp|Q8VYK7|ATG8F_ARATH Autophagy-related protein 8f OS=Arabidopsis thaliana GN=ATG8F PE=2 SV=1 Back     alignment and function desciption
 Score =  224 bits (571), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 110/121 (90%), Positives = 115/121 (95%)

Query: 6   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 65
           MAKS FKQEHDLEKRRAEAARIREKYPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct: 1   MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query: 66  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 125
           FVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGS 120

Query: 126 P 126
           P
Sbjct: 121 P 121
Involved in cytoplasm to vacuole transport (Cvt) vesicles and autophagosomes formation. May mediate the delivery of the vesicles and autophagosomes to the vacuole via the microtubule cytoskeleton.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9LZZ9|ATG8G_ARATH Autophagy-related protein 8g OS=Arabidopsis thaliana GN=ATG8G PE=2 SV=1 Back     alignment and function description
>sp|Q6Z1D5|ATG8C_ORYSJ Autophagy-related protein 8C OS=Oryza sativa subsp. japonica GN=ATG8C PE=2 SV=1 Back     alignment and function description
>sp|A2YS06|ATG8C_ORYSI Autophagy-related protein 8C OS=Oryza sativa subsp. indica GN=ATG8C PE=3 SV=2 Back     alignment and function description
>sp|Q8S926|ATG8E_ARATH Autophagy-related protein 8e OS=Arabidopsis thaliana GN=ATG8E PE=2 SV=2 Back     alignment and function description
>sp|Q8S927|ATG8C_ARATH Autophagy-related protein 8c OS=Arabidopsis thaliana GN=ATG8C PE=2 SV=1 Back     alignment and function description
>sp|Q9SL04|ATG8D_ARATH Autophagy-related protein 8d OS=Arabidopsis thaliana GN=ATG8D PE=1 SV=1 Back     alignment and function description
>sp|Q7XPR1|ATG8B_ORYSJ Autophagy-related protein 8B OS=Oryza sativa subsp. japonica GN=ATG8B PE=3 SV=2 Back     alignment and function description
>sp|A2XXR7|ATG8B_ORYSI Autophagy-related protein 8B OS=Oryza sativa subsp. indica GN=ATG8B PE=3 SV=1 Back     alignment and function description
>sp|Q69RC4|ATG8A_ORYSJ Autophagy-related protein 8A OS=Oryza sativa subsp. japonica GN=ATG8A PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
255569887122 gaba(A) receptor-associated protein, put 0.960 1.0 0.983 2e-62
224071541122 predicted protein [Populus trichocarpa] 0.960 1.0 0.967 5e-62
224125192122 predicted protein [Populus trichocarpa] 0.960 1.0 0.967 3e-61
301601262122 autophagy 8 [Ipomoea nil] 0.960 1.0 0.959 1e-60
21615419121 microtubule associated protein [Cicer ar 0.944 0.991 0.966 9e-60
357476885122 Autophagy-related protein 8f [Medicago t 0.944 0.983 0.966 1e-59
356540577123 PREDICTED: autophagy-related protein 8f- 0.960 0.991 0.942 1e-59
351727823122 uncharacterized protein LOC100499835 [Gl 0.921 0.959 0.974 3e-59
225427013122 PREDICTED: autophagy-related protein 8f 0.952 0.991 0.950 3e-59
356497149123 PREDICTED: autophagy-related protein 8f- 0.960 0.991 0.934 3e-59
>gi|255569887|ref|XP_002525907.1| gaba(A) receptor-associated protein, putative [Ricinus communis] gi|223534821|gb|EEF36511.1| gaba(A) receptor-associated protein, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  243 bits (619), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 120/122 (98%), Positives = 121/122 (99%)

Query: 6   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 65
           MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ
Sbjct: 1   MAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 60

Query: 66  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 125
           FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGS I
Sbjct: 61  FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSEI 120

Query: 126 PV 127
           P+
Sbjct: 121 PL 122

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224071541|ref|XP_002303509.1| predicted protein [Populus trichocarpa] gi|222840941|gb|EEE78488.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224125192|ref|XP_002329916.1| predicted protein [Populus trichocarpa] gi|118488644|gb|ABK96134.1| unknown [Populus trichocarpa] gi|222871153|gb|EEF08284.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|301601262|dbj|BAJ13303.1| autophagy 8 [Ipomoea nil] Back     alignment and taxonomy information
>gi|21615419|emb|CAD33929.1| microtubule associated protein [Cicer arietinum] Back     alignment and taxonomy information
>gi|357476885|ref|XP_003608728.1| Autophagy-related protein 8f [Medicago truncatula] gi|355509783|gb|AES90925.1| Autophagy-related protein 8f [Medicago truncatula] gi|388516669|gb|AFK46396.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356540577|ref|XP_003538764.1| PREDICTED: autophagy-related protein 8f-like [Glycine max] Back     alignment and taxonomy information
>gi|351727823|ref|NP_001236662.1| uncharacterized protein LOC100499835 [Glycine max] gi|255627035|gb|ACU13862.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225427013|ref|XP_002270997.1| PREDICTED: autophagy-related protein 8f [Vitis vinifera] gi|297741182|emb|CBI31913.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356497149|ref|XP_003517425.1| PREDICTED: autophagy-related protein 8f-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query127
TAIR|locus:2130759121 ATG8F "AT4G16520" [Arabidopsis 0.952 1.0 0.801 4.2e-47
TAIR|locus:2055537122 ATG8E "AUTOPHAGY 8E" [Arabidop 0.905 0.942 0.747 2.8e-43
TAIR|locus:2101816121 ATG8G "AUTOPHAGY 8G" [Arabidop 0.929 0.975 0.745 3.5e-43
TAIR|locus:2120618137 APG8A "AT4G21980" [Arabidopsis 0.929 0.861 0.737 1.1e-41
TAIR|locus:2058939164 ATG8D [Arabidopsis thaliana (t 0.724 0.560 0.858 1.5e-41
TAIR|locus:2125791122 ATG8B "AT4G04620" [Arabidopsis 0.921 0.959 0.692 6.8e-40
ASPGD|ASPL0000029812118 atgH [Emericella nidulans (tax 0.905 0.974 0.730 8.7e-40
POMBASE|SPBP8B7.24c121 atg8 "autophagy associated pro 0.937 0.983 0.663 3.4e-38
UNIPROTKB|Q51MW4123 ATG8 "Autophagy-related protei 0.905 0.934 0.704 7e-38
CGD|CAF0006954135 AUT7 [Candida albicans (taxid: 0.944 0.888 0.641 8.9e-38
TAIR|locus:2130759 ATG8F "AT4G16520" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
 Identities = 97/121 (80%), Positives = 102/121 (84%)

Query:     6 MAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQ 65
             MAKS FKQEHDL             YPDRIPVIVEKAE+SDIP IDKKKYLVPADLTVGQ
Sbjct:     1 MAKSSFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAEKSDIPTIDKKKYLVPADLTVGQ 60

Query:    66 FVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFGSHI 125
             FVYVIRKRIKLSAEKAIFIFVDNVLPP GA+MS++YEEKKD+DGFLYVTYSGENTFG   
Sbjct:    61 FVYVIRKRIKLSAEKAIFIFVDNVLPPAGALMSSVYEEKKDDDGFLYVTYSGENTFGFGS 120

Query:   126 P 126
             P
Sbjct:   121 P 121
GO:0006914 "autophagy" evidence=ISS
GO:0008017 "microtubule binding" evidence=ISS
TAIR|locus:2055537 ATG8E "AUTOPHAGY 8E" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101816 ATG8G "AUTOPHAGY 8G" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120618 APG8A "AT4G21980" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2058939 ATG8D [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125791 ATG8B "AT4G04620" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
ASPGD|ASPL0000029812 atgH [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
POMBASE|SPBP8B7.24c atg8 "autophagy associated protein Atg8" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|Q51MW4 ATG8 "Autophagy-related protein 8" [Magnaporthe oryzae 70-15 (taxid:242507)] Back     alignment and assigned GO terms
CGD|CAF0006954 AUT7 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A7E8H4ATG8_SCLS1No assigned EC number0.77960.92910.9593N/Ano
Q51MW4ATG8_MAGO7No assigned EC number0.79130.90550.9349N/Ano
Q0V3Y9ATG8_PHANONo assigned EC number0.80500.92910.9915N/Ano
Q1E4K5ATG8_COCIMNo assigned EC number0.80170.91330.9914N/Ano
Q5QFG1ATG8_PICANNo assigned EC number0.72410.91330.928N/Ano
Q2XPP5ATG8A_ORYSINo assigned EC number0.79660.92910.9915N/Ano
Q69RC4ATG8A_ORYSJNo assigned EC number0.79660.92910.9915nono
Q8VYK7ATG8F_ARATHNo assigned EC number0.90900.95271.0yesno
Q8S926ATG8E_ARATHNo assigned EC number0.83620.91330.9508nono
Q755X2ATG8_ASHGONo assigned EC number0.68960.91330.9666yesno
Q8LEM4ATG8A_ARATHNo assigned EC number0.80500.92910.9672nono
Q4P2U6ATG8_USTMANo assigned EC number0.81030.91330.9830N/Ano
Q8J282ATG8_PODASNo assigned EC number0.81730.90550.9504yesno
Q8NJJ4ATG8_PICPANo assigned EC number0.74130.91330.928yesno
P0CO55ATG8_CRYNBNo assigned EC number0.77770.92120.9285N/Ano
Q9LZZ9ATG8G_ARATHNo assigned EC number0.8250.94480.9917nono
Q9XEB5ATG8B_ARATHNo assigned EC number0.76060.92120.9590nono
A6ZKM4ATG8_YEAS7No assigned EC number0.74780.90550.9829N/Ano
P0CO54ATG8_CRYNJNo assigned EC number0.77770.92120.9285yesno
A7TDU7ATG8_VANPONo assigned EC number0.74130.91330.9830N/Ano
O94272ATG8_SCHPONo assigned EC number0.73940.93700.9834yesno
A1D3N4ATG8_NEOFINo assigned EC number0.81730.90550.9745N/Ano
Q4WJ27ATG8_ASPFUNo assigned EC number0.81730.90550.9745yesno
A2YS06ATG8C_ORYSINo assigned EC number0.87170.92120.975N/Ano
Q6BT31ATG8_DEBHANo assigned EC number0.73040.90550.8455yesno
Q6Z1D5ATG8C_ORYSJNo assigned EC number0.87170.92120.975yesno
A1CQS1ATG8_ASPCLNo assigned EC number0.81730.90550.9745N/Ano
P87068ATG8_LACBINo assigned EC number0.81730.90550.625N/Ano
Q7XPR1ATG8B_ORYSJNo assigned EC number0.85470.92120.9831yesno
A5DWI6ATG8_LODELNo assigned EC number0.72640.92120.8013N/Ano
Q5B2U9ATG8_EMENINo assigned EC number0.81730.90550.9745yesno
Q8S927ATG8C_ARATHNo assigned EC number0.82900.92120.9831nono
Q8H715ATG8_PHYINNo assigned EC number0.82600.90550.9913N/Ano
A6RPU4ATG8_BOTFBNo assigned EC number0.77960.92910.9593N/Ano
Q6FXR8ATG8_CANGANo assigned EC number0.73040.90550.9745yesno
A2QPN1ATG8_ASPNCNo assigned EC number0.81730.90550.9745yesno
Q6CMF8ATG8_KLULANo assigned EC number0.70430.90550.9274yesno
A2XXR7ATG8B_ORYSINo assigned EC number0.85470.92120.9831N/Ano
Q9SL04ATG8D_ARATHNo assigned EC number0.84610.92120.975nono
Q8WZY7ATG8_NEUCRNo assigned EC number0.81730.90550.9504N/Ano
P0C075ATG8_CANALNo assigned EC number0.71660.94480.8888N/Ano
A3GFU8ATG8_PICSTNo assigned EC number0.70830.94480.8633yesno
Q2UBH5ATG8_ASPORNo assigned EC number0.81730.90550.9745yesno
P38182ATG8_YEASTNo assigned EC number0.74780.90550.9829yesno
Q2GVL1ATG8_CHAGBNo assigned EC number0.80170.91330.9586N/Ano
Q6C794ATG8_YARLINo assigned EC number0.82600.90550.9274yesno
Q0C804ATG8_ASPTNNo assigned EC number0.81730.90550.9745N/Ano
A4LA70ATG8_COLLNNo assigned EC number0.81730.90550.9504N/Ano
Q86CR8ATG8_DICDINo assigned EC number0.71180.92120.9590yesno
A7KAL9ATG8_PENCWNo assigned EC number0.81730.90550.9745yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
cd01611112 cd01611, GABARAP, Ubiquitin domain of GABA-recepto 1e-71
pfam02991104 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin 4e-62
PTZ00380121 PTZ00380, PTZ00380, microtubule-associated protein 6e-14
cd0161287 cd01612, APG12_C, Ubiquitin-like domain of APG12 9e-05
pfam0411087 pfam04110, APG12, Ubiquitin-like autophagy protein 9e-05
>gnl|CDD|176355 cd01611, GABARAP, Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information 
 Score =  209 bits (533), Expect = 1e-71
 Identities = 80/112 (71%), Positives = 95/112 (84%)

Query: 11  FKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVI 70
           FK+ H  EKR+AE  RIR KYPDRIPVIVE+  +SD+P++DKKKYLVP+DLTVGQFVY+I
Sbjct: 1   FKERHPFEKRKAEVERIRAKYPDRIPVIVERYPKSDLPDLDKKKYLVPSDLTVGQFVYII 60

Query: 71  RKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 122
           RKRI+L  EKA+F+FV+N LPPT A MS +YEE KDEDGFLY+TYS E TFG
Sbjct: 61  RKRIQLRPEKALFLFVNNSLPPTSATMSQLYEEHKDEDGFLYMTYSSEETFG 112

GABARAP (GABA-receptor-associated protein) belongs ot a large family of proteins that mediate intracellular membrane trafficking and/or fusion. GABARAP binds not only to GABA, type A but also to tubulin, gephrin, and ULK1. Orthologues of GABARAP include Gate-16 (golgi-associated ATPase enhancer), LC3 (microtubule-associated protein light chain 3), and ATG8 (autophagy protein 8). ATG8 is a ubiquitin-like protein that is conjugated to the membrane phospholipid, phosphatidylethanolamine as part of a ubiquitin-like conjugation system essential for autophagosome-formation. Length = 112
>gnl|CDD|111837 pfam02991, Atg8, Autophagy protein Atg8 ubiquitin like Back     alignment and domain information
>gnl|CDD|173572 PTZ00380, PTZ00380, microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>gnl|CDD|176356 cd01612, APG12_C, Ubiquitin-like domain of APG12 Back     alignment and domain information
>gnl|CDD|217901 pfam04110, APG12, Ubiquitin-like autophagy protein Apg12 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 127
KOG1654116 consensus Microtubule-associated anchor protein in 100.0
cd01611112 GABARAP Ubiquitin domain of GABA-receptor-associat 100.0
PTZ00380121 microtubule-associated protein (MAP); Provisional 100.0
PF02991104 Atg8: Autophagy protein Atg8 ubiquitin like; Inter 100.0
cd0161287 APG12_C Ubiquitin-like domain of APG12. APG12_C Th 100.0
PF0411087 APG12: Ubiquitin-like autophagy protein Apg12 ; In 99.91
KOG3439116 consensus Protein conjugation factor involved in a 99.9
PF04106197 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 96.62
PF11816331 DUF3337: Domain of unknown function (DUF3337); Int 95.48
PF1197672 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; Inter 91.17
PF13019162 Telomere_Sde2: Telomere stability and silencing 90.45
cd0640680 PB1_P67 A PB1 domain is present in p67 proteins wh 89.54
KOG2976278 consensus Protein involved in autophagy and nutrie 84.04
smart0021364 UBQ Ubiquitin homologues. Ubiquitin-mediated prote 83.79
KOG2660331 consensus Locus-specific chromosome binding protei 83.47
cd0019669 UBQ Ubiquitin-like proteins. Ubiquitin homologs; I 83.4
PF0024069 ubiquitin: Ubiquitin family; InterPro: IPR000626 U 81.6
>KOG1654 consensus Microtubule-associated anchor protein involved in autophagy and membrane trafficking [Cytoskeleton] Back     alignment and domain information 
Probab=100.00  E-value=3.3e-53  Score=299.92  Aligned_cols=116  Identities=73%  Similarity=1.169  Sum_probs=113.8

Q ss_pred             CcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEEEE
Q 033114            7 AKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFIFV   86 (127)
Q Consensus         7 ~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFlyV   86 (127)
                      |+.+||++|+||+|++|+.+||+|||+|||||||+.+++++|+|||+|||||+++|||||+.+|||||+|+|++|+||||
T Consensus         1 ~~~~FK~~~~fe~R~~E~~~Ir~kyP~riPVIvEk~~~~~lp~lDK~KyLVP~dltvgqfi~iIRkRiqL~~~kA~flfV   80 (116)
T KOG1654|consen    1 MKSSFKERHPFEKRKAEVRRIREKYPDRIPVIVEKAGKSQLPDLDKKKYLVPDDLTVGQFIKIIRKRIQLSPEKAFFLFV   80 (116)
T ss_pred             CcchhhccCCHHHHHHHHHHHHHHCCCCCcEEEEecccccCcccccceeeccccccHHHHHHHHHHHhccChhHeEEEEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033114           87 DNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG  122 (127)
Q Consensus        87 n~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG  122 (127)
                      ||.+|+.+++|++||+++||+||||||+||+|+|||
T Consensus        81 n~~~p~ts~~ms~~Ye~~kdeDgFLYm~Ys~e~tfG  116 (116)
T KOG1654|consen   81 NNTSPPTSATMSALYEEEKDEDGFLYMTYSGENTFG  116 (116)
T ss_pred             cCcCCcchhhHHHHHHhhcccCcEEEEEeccccccC
Confidence            999998899999999999999999999999999999

>cd01611 GABARAP Ubiquitin domain of GABA-receptor-associated protein Back     alignment and domain information
>PTZ00380 microtubule-associated protein (MAP); Provisional Back     alignment and domain information
>PF02991 Atg8: Autophagy protein Atg8 ubiquitin like; InterPro: IPR004241 Autophagy is generally known as a process involved in the degradation of bulk cytoplasmic components that are non-specifically sequestered into an autophagosome, where they are sequestered into double-membrane vesicles and delivered to the degradative organelle, the lysosome/vacuole, for breakdown and eventual recycling of the resulting macromolecules Back     alignment and domain information
>cd01612 APG12_C Ubiquitin-like domain of APG12 Back     alignment and domain information
>PF04110 APG12: Ubiquitin-like autophagy protein Apg12 ; InterPro: IPR007242 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>KOG3439 consensus Protein conjugation factor involved in autophagy [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF04106 APG5: Autophagy protein Apg5 ; InterPro: IPR007239 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells Back     alignment and domain information
>PF11816 DUF3337: Domain of unknown function (DUF3337); InterPro: IPR021772 This family of proteins are functionally uncharacterised Back     alignment and domain information
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins Back     alignment and domain information
>PF13019 Telomere_Sde2: Telomere stability and silencing Back     alignment and domain information
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis Back     alignment and domain information
>KOG2976 consensus Protein involved in autophagy and nutrient starvation [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>smart00213 UBQ Ubiquitin homologues Back     alignment and domain information
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown] Back     alignment and domain information
>cd00196 UBQ Ubiquitin-like proteins Back     alignment and domain information
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
3vh3_B119 Crystal Structure Of Atg7ctd-Atg8 Complex Length = 2e-41
2kwc_A116 The Nmr Structure Of The Autophagy-Related Protein 3e-41
2li5_A117 Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 3e-41
2zpn_A119 The Crystal Structure Of Saccharomyces Cerevisiae A 8e-41
2kq7_A119 Solution Structure Of The Autophagy-Related Protein 9e-41
3rui_B118 Crystal Structure Of Atg7c-Atg8 Complex Length = 11 1e-40
1eo6_A117 Crystal Structure Of Gate-16 Length = 117 2e-34
3m95_A125 Crystal Structure Of Autophagy-Related Protein Atg8 3e-31
1kot_A119 Solution Structure Of Human Gaba Receptor Associate 3e-31
1kjt_A119 Crystal Structure Of The Gaba(A) Receptor Associate 6e-31
1gnu_A117 Gaba(a) Receptor Associated Protein Gabarap Length 8e-31
2l8j_A119 Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 7e-29
3h9d_A119 Crystal Structure Of Trypanosoma Brucei Atg8 Length 2e-28
2r2q_A110 Crystal Structure Of Human Gamma-Aminobutyric Acid 2e-28
4eoy_A128 Plasmodium Falciparum Atg8 In Complex With Plasmodi 4e-24
3vvw_B128 Ndp52 In Complex With Lc3c Length = 128 6e-20
2zjd_A130 Crystal Structure Of Lc3-P62 Complex Length = 130 5e-17
2z0e_B129 The Crystal Structure Of Human Atg4b- Lc3(1-124) Co 9e-17
1v49_A120 Solution Structure Of Microtubule-Associated Protei 1e-16
1ugm_A125 Crystal Structure Of Lc3 Length = 125 2e-16
2k6q_A121 Lc3 P62 Complex Structure Length = 121 2e-16
3eci_A122 Microtubule-Associated Protein 1 Light Chain 3 Alph 4e-16
>pdb|3VH3|B Chain B, Crystal Structure Of Atg7ctd-Atg8 Complex Length = 119 Back     alignment and structure 
Iteration: 1

 Score =  163 bits (413), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 81/119 (68%), Positives = 91/119 (76%)
Query: 4   GGMAKSYFKQEHDLXXXXXXXXXXXXXYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTV 63
           G   KS FK E+               +P+RIPVI EKAE+SDIP IDK+KYLVPADLTV
Sbjct: 1   GPHMKSTFKSEYPFEKRKAESERIADRFPNRIPVICEKAEKSDIPEIDKRKYLVPADLTV 60
Query: 64  GQFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 122
           GQFVYVIRKRI L  EKAIFIFV++ LPPT A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 61  GQFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 119
>pdb|2KWC|A Chain A, The Nmr Structure Of The Autophagy-Related Protein Atg8 Length = 116 Back     alignment and structure
>pdb|2LI5|A Chain A, Nmr Structure Of Atg8-Atg7c30 Complex Length = 117 Back     alignment and structure
>pdb|2ZPN|A Chain A, The Crystal Structure Of Saccharomyces Cerevisiae Atg8- Atg19(412-415) Complex Length = 119 Back     alignment and structure
>pdb|2KQ7|A Chain A, Solution Structure Of The Autophagy-Related Protein Atg8 Length = 119 Back     alignment and structure
>pdb|3RUI|B Chain B, Crystal Structure Of Atg7c-Atg8 Complex Length = 118 Back     alignment and structure
>pdb|1EO6|A Chain A, Crystal Structure Of Gate-16 Length = 117 Back     alignment and structure
>pdb|3M95|A Chain A, Crystal Structure Of Autophagy-Related Protein Atg8 From The Silkworm Bombyx Mori Length = 125 Back     alignment and structure
>pdb|1KOT|A Chain A, Solution Structure Of Human Gaba Receptor Associated Protein Gabarap Length = 119 Back     alignment and structure
>pdb|1KJT|A Chain A, Crystal Structure Of The Gaba(A) Receptor Associated Protein, Gabarap Length = 119 Back     alignment and structure
>pdb|1GNU|A Chain A, Gaba(a) Receptor Associated Protein Gabarap Length = 117 Back     alignment and structure
>pdb|2L8J|A Chain A, Gabarapl-1 Nbr1-Lir Complex Structure Length = 119 Back     alignment and structure
>pdb|3H9D|A Chain A, Crystal Structure Of Trypanosoma Brucei Atg8 Length = 119 Back     alignment and structure
>pdb|2R2Q|A Chain A, Crystal Structure Of Human Gamma-Aminobutyric Acid Receptor- Associated Protein-Like 1 (Gabarap1), Isoform Cra_a Length = 110 Back     alignment and structure
>pdb|4EOY|A Chain A, Plasmodium Falciparum Atg8 In Complex With Plasmodium Falciparum Atg3 Peptide Length = 128 Back     alignment and structure
>pdb|3VVW|B Chain B, Ndp52 In Complex With Lc3c Length = 128 Back     alignment and structure
>pdb|2ZJD|A Chain A, Crystal Structure Of Lc3-P62 Complex Length = 130 Back     alignment and structure
>pdb|2Z0E|B Chain B, The Crystal Structure Of Human Atg4b- Lc3(1-124) Complex Length = 129 Back     alignment and structure
>pdb|1V49|A Chain A, Solution Structure Of Microtubule-Associated Protein Light Chain-3 Length = 120 Back     alignment and structure
>pdb|1UGM|A Chain A, Crystal Structure Of Lc3 Length = 125 Back     alignment and structure
>pdb|2K6Q|A Chain A, Lc3 P62 Complex Structure Length = 121 Back     alignment and structure
>pdb|3ECI|A Chain A, Microtubule-Associated Protein 1 Light Chain 3 Alpha Isoform A (Map1alc3) Length = 122 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query127
3rui_B118 Autophagy-related protein 8; autophagosome formati 7e-56
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 5e-55
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 1e-53
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 4e-52
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 3e-49
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 2e-48
2dyo_A297 Autophagy protein 5; ubiquitin-fold, herix-bundle, 3e-06
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 9e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} PDB: 2kq7_A 2zpn_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Length = 118 Back     alignment and structure
 Score =  169 bits (428), Expect = 7e-56
 Identities = 87/118 (73%), Positives = 101/118 (85%)

Query: 5   GMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVG 64
           G  KS FK E+  EKR+AE+ RI +++ +RIPVI EKAE+SDIP IDK+KYLVPADLTVG
Sbjct: 1   GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVG 60

Query: 65  QFVYVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 122
           QFVYVIRKRI L  EKAIFIFV++ LPPT A+MSAIY+E KD+DGFLYVTYSGENTFG
Sbjct: 61  QFVYVIRKRIMLPPEKAIFIFVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG 118
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Length = 117 Back     alignment and structure
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} Length = 125 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} Length = 119 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Length = 130 Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Length = 110 Back     alignment and structure
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Length = 297 Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Length = 96 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
3rui_B118 Autophagy-related protein 8; autophagosome formati 100.0
3m95_A125 Autophagy related protein ATG8; alpha slash beta, 100.0
3h9d_A119 ATG8, microtubule-associated protein 1A/1B, light 100.0
1eo6_A117 GATE-16, golgi-associated ATPase enhancer of 16 KD 100.0
2zjd_A130 Microtubule-associated proteins 1A/1B light chain 100.0
2r2q_A110 Gamma-aminobutyric acid receptor-associated protei 100.0
4gdk_A91 Ubiquitin-like protein ATG12; protein-protein conj 100.0
1wz3_A96 Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, pla 100.0
3w1s_C91 Ubiquitin-like protein ATG12; ubiquitin fold, E3-l 99.98
2dyo_A297 Autophagy protein 5; ubiquitin-fold, herix-bundle, 95.5
4gdk_B275 Autophagy protein 5; protein-protein conjugate, pr 95.22
3vqi_A274 ATG5; autophagy, E3-like, ubiquitin-fold, PRE-auto 94.68
3goe_A82 DNA repair protein RAD60; SUMO-like domain, sumoyl 93.35
2uyz_B79 Small ubiquitin-related modifier 1; sumoylation, c 81.93
3a4r_A79 Nfatc2-interacting protein; ubiquitin fold, coiled 81.52
1oey_A83 P67-PHOX, neutrophil cytosol factor 2; immune syst 80.35
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B* Back     alignment and structure
Probab=100.00  E-value=6.8e-55  Score=312.76  Aligned_cols=118  Identities=74%  Similarity=1.162  Sum_probs=112.4

Q ss_pred             CCCcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE
Q 033114            5 GMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI   84 (127)
Q Consensus         5 ~~~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl   84 (127)
                      |.|+++||++||||+|++|+++||+|||+|||||||+++++++|.|+++|||||+++||+||+.+||++|+|+++++|||
T Consensus         1 ~~m~~~fK~~~~~e~R~~e~~~ir~kyP~riPVIvE~~~~~~~P~ldk~KflVp~~~tv~qf~~~iRkrl~l~~~~alFl   80 (118)
T 3rui_B            1 GSMKSTFKSEYPFEKRKAESERIADRFKNRIPVICEKAEKSDIPEIDKRKYLVPADLTVGQFVYVIRKRIMLPPEKAIFI   80 (118)
T ss_dssp             -----CCTTSSCHHHHHHHHHHHHHHCSSEEEEEEEECTTCCSCCCSCCEEEEETTSBHHHHHHHHHHHTTCCTTCCEEE
T ss_pred             CCCcchhhccCCHHHHHHHHHHHHHhCCCceEEEEEeCCCCCCCccccceEEcCCCCCHHHHHHHHHHHhCcCCCccEEE
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033114           85 FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG  122 (127)
Q Consensus        85 yVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG  122 (127)
                      ||||++|++|++||+||++|||+||||||+||+++|||
T Consensus        81 ~Vn~~~p~~~~~m~~lY~~~kdeDGfLyv~Ys~~~~fG  118 (118)
T 3rui_B           81 FVNDTLPPTAALMSAIYQEHKDKDGFLYVTYSGENTFG  118 (118)
T ss_dssp             EBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEECCCBC
T ss_pred             EECCccCCccchHHHHHHHcCCCCCeEEEEEeccccCC
Confidence            99999999999999999999999999999999999999
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3 Back     alignment and structure
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0 Back     alignment and structure
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3 Back     alignment and structure
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A Back     alignment and structure
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A Back     alignment and structure
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A Back     alignment and structure
>1wz3_A Autophagy 12B, ATG12B, APG12B; ubiquitin-fold, plant protein; 1.80A {Arabidopsis thaliana} SCOP: d.15.1.7 Back     alignment and structure
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C} Back     alignment and structure
>2dyo_A Autophagy protein 5; ubiquitin-fold, herix-bundle, protein turnover/protein turnover complex; 1.97A {Saccharomyces cerevisiae} PDB: 2dym_A Back     alignment and structure
>4gdk_B Autophagy protein 5; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_B Back     alignment and structure
>3vqi_A ATG5; autophagy, E3-like, ubiquitin-fold, PRE-autoph structure, protein turnover, protein transport; HET: EPE; 2.50A {Kluyveromyces marxianus} Back     alignment and structure
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A* Back     alignment and structure
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B Back     alignment and structure
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A Back     alignment and structure
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 127
d1eo6a_116 d.15.1.3 (A:) Golgi-associated ATPase enhancer of 1e-62
d3d32a1118 d.15.1.3 (A:1-118) GABA(A) receptor associated pro 2e-60
d2zjda1119 d.15.1.3 (A:2-120) Microtubule-associated proteins 1e-53
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Length = 116 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: Golgi-associated ATPase enhancer of 16 kD, Gate-16
species: Cow (Bos taurus) [TaxId: 9913]

 Score =  184 bits (470), Expect = 1e-62
 Identities = 72/115 (62%), Positives = 92/115 (80%)

Query: 8   KSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFV 67
           K  FK++H LE R  E+A+IR KYPDR+PVIVEK   S I +IDK+KYLVP+D+TV QF+
Sbjct: 2   KWMFKEDHSLEHRCVESAKIRAKYPDRVPVIVEKVSGSQIVDIDKRKYLVPSDITVAQFM 61

Query: 68  YVIRKRIKLSAEKAIFIFVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG 122
           ++IRKRI+L +EKAIF+FVD  +P +   M  +YE++KDEDGFLYV YSGENTFG
Sbjct: 62  WIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSGENTFG 116
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Length = 118 Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Length = 119 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query127
d3d32a1118 GABA(A) receptor associated protein GABARAP {Human 100.0
d1eo6a_116 Golgi-associated ATPase enhancer of 16 kD, Gate-16 100.0
d2zjda1119 Microtubule-associated proteins 1A/1B light chain 100.0
d1wz3a184 Autophagy-related protein 12b (APG12b) {Thale cres 99.88
d1euvb_79 SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomy 87.49
d1uh6a_100 Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculu 86.8
d1m94a_73 Ubiquitin-like modifier protein hub1 {Baker's yeas 86.47
d2uyzb177 SUMO-1 (smt3 homologue) {Human (Homo sapiens) [Tax 80.79
>d3d32a1 d.15.1.3 (A:1-118) GABA(A) receptor associated protein GABARAP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: Ubiquitin-like
family: GABARAP-like
domain: GABA(A) receptor associated protein GABARAP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.5e-53  Score=304.02  Aligned_cols=118  Identities=59%  Similarity=1.033  Sum_probs=116.5

Q ss_pred             CCCcccccccCCHHHHHHHHHHHHhhCCCcccEEEEccCCCCCCCCccceEEecCCCchHHHHHHHHHhhCCCCCceEEE
Q 033114            5 GMAKSYFKQEHDLEKRRAEAARIREKYPDRIPVIVEKAERSDIPNIDKKKYLVPADLTVGQFVYVIRKRIKLSAEKAIFI   84 (127)
Q Consensus         5 ~~~~~~fK~~~s~e~R~~e~~~ir~kyP~~ipVIvE~~~~~~~p~L~k~KflVp~~~tv~~~~~~lRk~L~l~~~~slFl   84 (127)
                      ++|+++||++||||+|++|++++++|||+|||||||+++++++|.|+++|||||.++||+||+.+||+||+|++++||||
T Consensus         1 ~~m~~~fk~~~s~e~R~~es~~i~~KyPdriPVIve~~~~s~lp~ldk~KflVp~d~tv~qf~~~iRkrl~l~~~~alfl   80 (118)
T d3d32a1           1 GSMKFVYKEEHPFEKRRSEGEKIRKKYPDRVPVIVEKAPKARIGDLDKKKYLVPSDLTVGQFYFLIRKRIHLRAEDALFF   80 (118)
T ss_dssp             CCSCCHHHHHSCHHHHHHHHHHHHHHCTTEEEEEEEECTTCCSCCCSCSEEEEETTCBHHHHHHHHHHHHTCCTTSCCEE
T ss_pred             CCccchhcccCCHHHHHHHHHHHHHHCCCCceEEEEEcCCCCCcccccceEEecCCccHHHHHHHHHHHhCCCccceEEE
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEcCCCCCccchHHHHHhhhcCCCCeEEEEecCCcccC
Q 033114           85 FVDNVLPPTGAIMSAIYEEKKDEDGFLYVTYSGENTFG  122 (127)
Q Consensus        85 yVn~~lp~~~~~m~~lY~~~kd~DGfLYi~Ys~~~~fG  122 (127)
                      ||||.+|+++++||+||++|||+||||||+||+|+|||
T Consensus        81 fvn~~~~~~~~ti~~lY~~~kdeDGfLYi~Ys~entFG  118 (118)
T d3d32a1          81 FVNNVIPPTSATMGQLYQEHHEEDFFLYIAYSDESVYG  118 (118)
T ss_dssp             EBTTBCCCTTCBHHHHHHHHCCTTSCEEEEEESCTTCC
T ss_pred             EECCcccCccccHHHHHHHhCCCCcEEEEEEecccccC
Confidence            99999999999999999999999999999999999999
>d1eo6a_ d.15.1.3 (A:) Golgi-associated ATPase enhancer of 16 kD, Gate-16 {Cow (Bos taurus) [TaxId: 9913]} Back     information, alignment and structure
>d2zjda1 d.15.1.3 (A:2-120) Microtubule-associated proteins 1A/1B light chain 3B {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1wz3a1 d.15.1.7 (A:10-93) Autophagy-related protein 12b (APG12b) {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Back     information, alignment and structure
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast (Saccharomyces cerevisiae), smt3 [TaxId: 4932]} Back     information, alignment and structure
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure